Query 011711
Match_columns 479
No_of_seqs 870 out of 2530
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 13:47:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011711.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011711hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 3E-44 1E-48 370.8 44.3 379 84-474 53-569 (611)
2 1nr0_A Actin interacting prote 100.0 8.5E-43 2.9E-47 359.9 38.6 361 84-471 141-610 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 3.6E-42 1.2E-46 353.1 41.6 349 85-469 216-577 (577)
4 4gqb_B Methylosome protein 50; 100.0 2.8E-42 9.5E-47 329.9 33.3 297 83-475 23-334 (344)
5 1vyh_C Platelet-activating fac 100.0 4.1E-42 1.4E-46 337.5 33.5 281 83-470 101-409 (410)
6 4g56_B MGC81050 protein; prote 100.0 1.4E-42 4.9E-47 334.2 27.4 297 82-474 34-345 (357)
7 3ow8_A WD repeat-containing pr 100.0 2.6E-41 8.9E-46 320.5 33.6 280 86-471 28-320 (321)
8 2ymu_A WD-40 repeat protein; u 100.0 3.2E-40 1.1E-44 338.5 43.5 351 86-471 12-374 (577)
9 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.4E-38 8.1E-43 314.3 47.2 316 144-474 111-444 (445)
10 3frx_A Guanine nucleotide-bind 100.0 1.2E-39 4E-44 309.0 35.0 284 85-473 12-318 (319)
11 1got_B GT-beta; complex (GTP-b 100.0 2E-38 6.9E-43 303.3 41.6 285 143-469 47-340 (340)
12 2pbi_B Guanine nucleotide-bind 100.0 1E-37 3.5E-42 300.0 42.1 279 183-469 55-354 (354)
13 2xzm_R RACK1; ribosome, transl 100.0 6.5E-39 2.2E-43 307.1 33.4 290 85-474 16-342 (343)
14 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.9E-39 1.7E-43 308.2 32.1 292 85-475 10-338 (345)
15 1pgu_A Actin interacting prote 100.0 1.2E-38 4.2E-43 328.9 37.2 377 85-473 58-573 (615)
16 3iz6_a 40S ribosomal protein R 100.0 6.8E-39 2.3E-43 311.4 33.2 296 172-474 47-377 (380)
17 2ynn_A Coatomer subunit beta'; 100.0 3.8E-39 1.3E-43 303.3 29.5 283 85-432 8-302 (304)
18 2ynn_A Coatomer subunit beta'; 100.0 1.5E-37 5.1E-42 292.4 40.3 282 144-473 6-303 (304)
19 1r5m_A SIR4-interacting protei 100.0 5.8E-39 2E-43 315.6 31.6 347 88-471 43-424 (425)
20 1pgu_A Actin interacting prote 100.0 9.3E-39 3.2E-43 329.8 33.8 360 85-472 155-614 (615)
21 3sfz_A APAF-1, apoptotic pepti 100.0 9.3E-39 3.2E-43 356.1 36.2 365 85-475 652-1161(1249)
22 4aow_A Guanine nucleotide-bind 100.0 5.2E-38 1.8E-42 299.7 36.2 287 85-474 33-339 (340)
23 4ery_A WD repeat-containing pr 100.0 9.5E-38 3.2E-42 294.8 37.1 283 85-471 18-311 (312)
24 1got_B GT-beta; complex (GTP-b 100.0 3.4E-38 1.2E-42 301.7 31.7 279 84-429 49-340 (340)
25 2oaj_A Protein SNI1; WD40 repe 100.0 2.5E-38 8.6E-43 338.6 33.2 360 87-473 14-606 (902)
26 3v7d_B Cell division control p 100.0 2.4E-36 8.1E-41 301.4 45.1 313 145-471 115-462 (464)
27 2pbi_B Guanine nucleotide-bind 100.0 1E-37 3.4E-42 300.0 33.2 281 85-429 59-354 (354)
28 2hes_X YDR267CP; beta-propelle 100.0 7.4E-37 2.5E-41 291.1 37.3 292 144-472 7-328 (330)
29 3sfz_A APAF-1, apoptotic pepti 100.0 1.7E-37 5.9E-42 345.9 37.8 360 85-474 610-1076(1249)
30 3vl1_A 26S proteasome regulato 100.0 1.5E-37 5E-42 305.9 32.6 315 91-472 57-419 (420)
31 1gxr_A ESG1, transducin-like e 100.0 1.7E-36 6E-41 288.5 38.8 318 89-471 8-336 (337)
32 3iz6_a 40S ribosomal protein R 100.0 4.1E-38 1.4E-42 305.9 26.9 291 85-435 61-378 (380)
33 2pm9_A Protein WEB1, protein t 100.0 1.1E-38 3.7E-43 313.3 23.1 325 91-473 13-415 (416)
34 2ovr_B FBW7, F-BOX/WD repeat p 100.0 8.8E-37 3E-41 303.0 36.7 319 85-432 113-442 (445)
35 1erj_A Transcriptional repress 100.0 1.3E-36 4.5E-41 296.6 33.5 303 88-433 62-390 (393)
36 1p22_A F-BOX/WD-repeat protein 100.0 6.8E-36 2.3E-40 295.7 37.2 276 149-475 131-417 (435)
37 2hes_X YDR267CP; beta-propelle 100.0 8E-37 2.7E-41 290.9 28.8 287 85-432 9-328 (330)
38 1erj_A Transcriptional repress 100.0 4.5E-35 1.5E-39 285.8 41.0 271 153-473 68-390 (393)
39 2oaj_A Protein SNI1; WD40 repe 100.0 8.1E-36 2.8E-40 319.2 37.5 366 89-470 97-659 (902)
40 1vyh_C Platelet-activating fac 100.0 4E-35 1.4E-39 287.7 35.6 244 184-474 100-371 (410)
41 1p22_A F-BOX/WD-repeat protein 100.0 9.3E-36 3.2E-40 294.7 31.1 314 60-452 112-434 (435)
42 3mkq_A Coatomer beta'-subunit; 100.0 7.1E-35 2.4E-39 310.9 37.9 354 85-473 8-424 (814)
43 1sq9_A Antiviral protein SKI8; 100.0 1.3E-34 4.3E-39 282.6 35.1 286 145-473 10-396 (397)
44 4gga_A P55CDC, cell division c 100.0 4E-34 1.4E-38 281.6 38.3 272 155-473 109-396 (420)
45 4e54_B DNA damage-binding prot 100.0 2.5E-36 8.6E-41 298.8 22.3 270 163-475 134-433 (435)
46 3dm0_A Maltose-binding peripla 100.0 3.4E-34 1.2E-38 300.3 39.2 282 145-472 376-693 (694)
47 4aez_A CDC20, WD repeat-contai 100.0 7E-34 2.4E-38 278.2 38.3 274 154-475 96-383 (401)
48 3odt_A Protein DOA1; ubiquitin 100.0 4.9E-33 1.7E-37 261.9 42.0 283 177-475 3-299 (313)
49 3k26_A Polycomb protein EED; W 100.0 8E-35 2.7E-39 280.3 30.1 275 149-471 16-365 (366)
50 3ei3_B DNA damage-binding prot 100.0 7E-34 2.4E-38 276.2 35.9 286 175-472 57-382 (383)
51 3ow8_A WD repeat-containing pr 100.0 6.7E-34 2.3E-38 269.5 34.1 246 184-474 24-281 (321)
52 3zwl_B Eukaryotic translation 100.0 2E-32 6.9E-37 263.6 44.4 285 183-473 23-347 (369)
53 4gqb_B Methylosome protein 50; 100.0 7.1E-34 2.4E-38 271.6 33.6 233 154-434 87-333 (344)
54 2j04_B YDR362CP, TAU91; beta p 100.0 6.3E-35 2.1E-39 293.0 27.3 335 89-473 132-518 (524)
55 3dwl_C Actin-related protein 2 100.0 2.2E-35 7.5E-40 286.1 23.0 282 88-470 9-377 (377)
56 4ggc_A P55CDC, cell division c 100.0 4.5E-33 1.5E-37 262.9 37.3 271 156-473 30-316 (318)
57 4g56_B MGC81050 protein; prote 100.0 1.7E-34 5.9E-39 277.8 27.7 269 165-474 20-303 (357)
58 4a11_B DNA excision repair pro 100.0 5.4E-34 1.9E-38 278.7 31.0 298 170-475 22-368 (408)
59 1k8k_C P40, ARP2/3 complex 41 100.0 2.8E-33 9.5E-38 270.4 35.4 282 151-474 10-363 (372)
60 3frx_A Guanine nucleotide-bind 100.0 4.9E-33 1.7E-37 263.4 36.1 246 183-472 8-267 (319)
61 3dm0_A Maltose-binding peripla 100.0 3.8E-34 1.3E-38 299.9 30.8 292 85-432 377-693 (694)
62 2pm7_B Protein transport prote 100.0 4.6E-33 1.6E-37 260.8 34.8 244 185-472 2-285 (297)
63 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.5E-33 1.5E-37 266.7 34.9 251 181-473 4-284 (345)
64 3v7d_B Cell division control p 100.0 2.6E-32 8.8E-37 272.2 40.2 291 175-475 104-424 (464)
65 2pm7_B Protein transport prote 100.0 9.5E-34 3.2E-38 265.5 27.4 246 86-432 5-285 (297)
66 4ery_A WD repeat-containing pr 100.0 4.1E-32 1.4E-36 256.1 38.1 247 181-474 12-270 (312)
67 3gre_A Serine/threonine-protei 100.0 2.6E-33 8.8E-38 277.2 30.4 281 176-469 48-437 (437)
68 1r5m_A SIR4-interacting protei 100.0 2E-32 6.7E-37 268.9 35.5 292 171-474 25-363 (425)
69 3vl1_A 26S proteasome regulato 100.0 2.5E-32 8.4E-37 268.5 34.9 273 153-473 60-366 (420)
70 4a11_B DNA excision repair pro 100.0 2.2E-32 7.6E-37 267.2 33.9 335 111-472 22-405 (408)
71 3k26_A Polycomb protein EED; W 100.0 9.8E-34 3.3E-38 272.7 23.4 291 87-432 15-366 (366)
72 3odt_A Protein DOA1; ubiquitin 100.0 2.2E-31 7.6E-36 250.5 38.5 285 145-444 12-308 (313)
73 3i2n_A WD repeat-containing pr 100.0 5.1E-32 1.7E-36 259.9 34.7 284 145-474 12-355 (357)
74 1k8k_C P40, ARP2/3 complex 41 100.0 5.9E-33 2E-37 268.1 28.1 294 87-435 5-364 (372)
75 1sq9_A Antiviral protein SKI8; 100.0 1.8E-33 6.2E-38 274.4 24.6 295 85-434 11-397 (397)
76 3mkq_A Coatomer beta'-subunit; 100.0 3.5E-31 1.2E-35 282.5 44.3 318 144-472 6-386 (814)
77 3i2n_A WD repeat-containing pr 100.0 6.1E-33 2.1E-37 266.3 27.7 285 85-387 13-355 (357)
78 3zwl_B Eukaryotic translation 100.0 4E-31 1.4E-35 254.5 40.4 284 145-439 26-353 (369)
79 2xzm_R RACK1; ribosome, transl 100.0 1.6E-31 5.3E-36 255.8 36.8 250 183-474 12-287 (343)
80 1gxr_A ESG1, transducin-like e 100.0 1.4E-31 4.8E-36 254.5 36.0 283 149-474 9-298 (337)
81 3bg1_A Protein SEC13 homolog; 100.0 1.9E-33 6.7E-38 265.8 20.7 247 85-431 8-292 (316)
82 2pm9_A Protein WEB1, protein t 100.0 2.7E-32 9.4E-37 267.6 29.3 279 154-475 17-340 (416)
83 3mmy_A MRNA export factor; mRN 100.0 2.6E-32 9E-37 262.7 28.4 285 85-472 34-346 (368)
84 4h5i_A Guanine nucleotide-exch 100.0 2E-32 7E-37 264.0 27.5 285 92-386 16-344 (365)
85 3bg1_A Protein SEC13 homolog; 100.0 1.2E-32 4E-37 260.5 24.5 245 186-472 7-293 (316)
86 3ei3_B DNA damage-binding prot 100.0 4.4E-32 1.5E-36 263.5 28.9 279 85-432 68-382 (383)
87 4aow_A Guanine nucleotide-bind 100.0 3.3E-31 1.1E-35 252.6 34.1 249 183-473 29-287 (340)
88 3f3f_A Nucleoporin SEH1; struc 100.0 5.3E-32 1.8E-36 258.1 26.9 302 84-474 5-339 (351)
89 3gre_A Serine/threonine-protei 100.0 2.2E-32 7.4E-37 270.6 24.8 284 87-429 60-437 (437)
90 2j04_A TAU60, YPL007P, hypothe 100.0 1.1E-32 3.6E-37 270.7 20.9 310 89-460 14-349 (588)
91 2aq5_A Coronin-1A; WD40 repeat 100.0 1.8E-31 6.1E-36 261.1 29.2 271 163-474 49-344 (402)
92 3dw8_B Serine/threonine-protei 100.0 2.6E-31 9E-36 263.3 30.5 273 190-470 26-444 (447)
93 3jrp_A Fusion protein of prote 100.0 1E-30 3.5E-35 252.8 32.2 248 183-472 2-287 (379)
94 1yfq_A Cell cycle arrest prote 100.0 4.2E-30 1.4E-34 245.2 35.5 272 185-464 4-315 (342)
95 4aez_A CDC20, WD repeat-contai 100.0 1E-30 3.5E-35 255.6 30.9 284 87-440 88-388 (401)
96 3jrp_A Fusion protein of prote 100.0 3.6E-31 1.2E-35 256.0 26.5 254 84-390 5-292 (379)
97 3vu4_A KMHSV2; beta-propeller 100.0 5.6E-30 1.9E-34 246.1 34.5 286 175-475 3-339 (355)
98 4h5i_A Guanine nucleotide-exch 100.0 2.4E-30 8.4E-35 249.5 31.1 270 192-473 14-344 (365)
99 4gga_A P55CDC, cell division c 100.0 2.1E-29 7E-34 248.0 33.6 282 93-439 108-402 (420)
100 1yfq_A Cell cycle arrest prote 100.0 1.2E-30 4.1E-35 249.0 22.3 277 87-382 8-321 (342)
101 3vu4_A KMHSV2; beta-propeller 100.0 2.4E-29 8.2E-34 241.7 30.4 283 85-434 14-338 (355)
102 4ggc_A P55CDC, cell division c 100.0 1.2E-28 4.2E-33 232.4 34.5 276 94-434 29-317 (318)
103 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.4E-28 8.1E-33 242.6 37.5 285 151-473 6-392 (450)
104 2j04_B YDR362CP, TAU91; beta p 100.0 5E-30 1.7E-34 257.4 25.5 263 184-472 126-428 (524)
105 3lrv_A PRE-mRNA-splicing facto 100.0 3.3E-29 1.1E-33 239.7 27.8 267 159-472 46-333 (343)
106 2xyi_A Probable histone-bindin 100.0 9.3E-29 3.2E-33 244.0 29.5 269 173-472 109-410 (430)
107 3mmy_A MRNA export factor; mRN 100.0 2.8E-28 9.5E-33 234.5 32.0 250 182-474 29-306 (368)
108 3dwl_C Actin-related protein 2 100.0 5.5E-30 1.9E-34 248.1 19.3 239 187-471 6-280 (377)
109 3dw8_B Serine/threonine-protei 100.0 2.7E-28 9.1E-33 241.6 30.7 274 153-431 32-445 (447)
110 3jro_A Fusion protein of prote 100.0 8.2E-29 2.8E-33 261.2 28.1 246 185-473 2-286 (753)
111 4gq1_A NUP37; propeller, trans 100.0 6.8E-29 2.3E-33 241.9 24.7 253 156-471 96-388 (393)
112 1l0q_A Surface layer protein; 100.0 2.8E-26 9.5E-31 223.1 42.9 298 163-474 4-344 (391)
113 2aq5_A Coronin-1A; WD40 repeat 100.0 2.6E-28 8.8E-33 238.7 27.6 280 94-435 38-345 (402)
114 3bws_A Protein LP49; two-domai 100.0 2.9E-27 9.7E-32 233.4 34.0 268 154-472 127-432 (433)
115 3jro_A Fusion protein of prote 100.0 9E-29 3.1E-33 260.9 24.2 247 85-432 4-285 (753)
116 4e54_B DNA damage-binding prot 100.0 1.1E-28 3.8E-33 243.9 23.2 248 183-474 110-389 (435)
117 3lrv_A PRE-mRNA-splicing facto 100.0 7.1E-28 2.4E-32 230.3 26.2 264 94-430 40-331 (343)
118 2xyi_A Probable histone-bindin 100.0 2E-26 6.8E-31 227.3 31.3 245 153-433 132-411 (430)
119 2j04_A TAU60, YPL007P, hypothe 100.0 2.3E-27 7.8E-32 233.0 24.0 254 190-471 13-296 (588)
120 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3E-26 1E-30 227.5 29.2 296 90-432 4-391 (450)
121 1nir_A Nitrite reductase; hemo 99.9 3.2E-24 1.1E-28 216.9 38.8 307 157-474 145-516 (543)
122 1l0q_A Surface layer protein; 99.9 4.6E-24 1.6E-28 207.4 37.6 258 205-474 3-277 (391)
123 2w18_A PALB2, fancn, partner a 99.9 2.3E-25 7.9E-30 205.8 26.1 236 164-430 56-355 (356)
124 2w18_A PALB2, fancn, partner a 99.9 1.3E-25 4.5E-30 207.5 22.2 184 169-383 155-355 (356)
125 3bws_A Protein LP49; two-domai 99.9 3.1E-24 1E-28 211.6 31.3 272 92-385 124-432 (433)
126 4gq1_A NUP37; propeller, trans 99.9 2.1E-25 7.1E-30 217.3 17.5 264 87-383 86-387 (393)
127 3f3f_A Nucleoporin SEH1; struc 99.9 7.8E-24 2.7E-28 201.4 27.1 215 185-436 4-253 (351)
128 1nir_A Nitrite reductase; hemo 99.9 1.3E-22 4.5E-27 205.0 33.7 320 96-441 143-523 (543)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.4E-21 2.2E-25 186.8 32.1 268 172-454 94-409 (415)
130 1k32_A Tricorn protease; prote 99.9 1E-21 3.4E-26 214.7 29.1 350 85-471 94-501 (1045)
131 1k32_A Tricorn protease; prote 99.9 2.1E-21 7E-26 212.2 30.7 350 87-474 200-639 (1045)
132 2z3z_A Dipeptidyl aminopeptida 99.9 1.1E-20 3.6E-25 198.3 30.7 302 161-474 35-437 (706)
133 2ecf_A Dipeptidyl peptidase IV 99.9 1.2E-20 4E-25 199.1 30.7 312 153-472 40-459 (741)
134 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.2E-20 4.1E-25 184.8 28.4 271 191-474 61-389 (415)
135 1ri6_A Putative isomerase YBHE 99.9 1.3E-19 4.5E-24 172.2 32.8 269 164-472 8-308 (343)
136 3u4y_A Uncharacterized protein 99.9 4.6E-19 1.6E-23 167.9 36.0 268 163-435 12-307 (331)
137 3vgz_A Uncharacterized protein 99.9 1.6E-18 5.5E-23 165.5 36.0 261 191-462 39-334 (353)
138 1pby_B Quinohemoprotein amine 99.9 1.8E-19 6.3E-24 170.7 27.0 265 163-474 3-312 (337)
139 1xfd_A DIP, dipeptidyl aminope 99.9 3.1E-19 1.1E-23 187.6 30.4 297 92-458 18-426 (723)
140 2ecf_A Dipeptidyl peptidase IV 99.8 9.5E-19 3.2E-23 184.5 29.3 273 192-472 36-413 (741)
141 2z3z_A Dipeptidyl aminopeptida 99.8 8.2E-19 2.8E-23 183.9 27.1 358 93-471 28-475 (706)
142 2ojh_A Uncharacterized protein 99.8 4.3E-18 1.5E-22 157.8 29.0 245 166-422 17-293 (297)
143 3u4y_A Uncharacterized protein 99.8 2.8E-17 9.5E-22 155.6 33.4 265 199-474 4-306 (331)
144 1ri6_A Putative isomerase YBHE 99.8 6.5E-18 2.2E-22 160.4 27.0 295 101-453 4-333 (343)
145 3hfq_A Uncharacterized protein 99.8 1.1E-16 3.8E-21 152.6 32.7 267 168-472 13-317 (347)
146 1jmx_B Amine dehydrogenase; ox 99.8 3.6E-17 1.2E-21 155.7 27.6 256 197-474 4-327 (349)
147 3vgz_A Uncharacterized protein 99.8 2.5E-16 8.7E-21 150.2 33.3 256 153-420 44-333 (353)
148 1xfd_A DIP, dipeptidyl aminope 99.8 8E-18 2.7E-22 176.9 24.2 273 194-473 18-394 (723)
149 2ojh_A Uncharacterized protein 99.8 2.9E-17 9.8E-22 152.2 24.9 244 209-462 17-292 (297)
150 2oit_A Nucleoporin 214KDA; NH2 99.8 3.7E-17 1.3E-21 160.7 26.7 193 153-386 40-279 (434)
151 2oit_A Nucleoporin 214KDA; NH2 99.8 2.2E-17 7.5E-22 162.3 24.5 231 171-433 23-279 (434)
152 1pby_B Quinohemoprotein amine 99.8 3.3E-17 1.1E-21 155.1 24.0 266 103-395 2-320 (337)
153 1z68_A Fibroblast activation p 99.8 9.7E-18 3.3E-22 176.2 21.3 311 156-474 22-445 (719)
154 3o4h_A Acylamino-acid-releasin 99.8 3.7E-17 1.3E-21 167.4 24.7 262 191-470 20-313 (582)
155 3scy_A Hypothetical bacterial 99.8 3.4E-15 1.2E-19 143.1 37.0 266 168-472 24-337 (361)
156 1z68_A Fibroblast activation p 99.7 1.8E-16 6.3E-21 166.4 22.5 318 94-438 19-449 (719)
157 3pe7_A Oligogalacturonate lyas 99.7 7.9E-16 2.7E-20 148.9 25.1 252 172-431 61-381 (388)
158 2oiz_A Aromatic amine dehydrog 99.7 1.5E-14 5.2E-19 138.6 32.9 273 169-454 29-359 (361)
159 1jmx_B Amine dehydrogenase; ox 99.7 4.6E-15 1.6E-19 141.1 28.4 265 94-394 3-334 (349)
160 3hfq_A Uncharacterized protein 99.7 2.1E-14 7.1E-19 136.8 30.1 232 151-384 41-316 (347)
161 3scy_A Hypothetical bacterial 99.7 6.3E-14 2.2E-18 134.2 32.8 313 95-451 6-360 (361)
162 3o4h_A Acylamino-acid-releasin 99.7 2.4E-15 8.1E-20 154.0 23.1 256 153-432 25-315 (582)
163 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.8E-14 6.1E-19 138.5 27.6 265 171-473 14-342 (365)
164 4a5s_A Dipeptidyl peptidase 4 99.7 2.3E-14 7.7E-19 150.9 28.0 329 92-439 18-456 (740)
165 3pe7_A Oligogalacturonate lyas 99.7 5.6E-14 1.9E-18 135.9 28.4 289 176-474 15-384 (388)
166 1qks_A Cytochrome CD1 nitrite 99.7 3.9E-12 1.3E-16 128.3 42.4 303 162-474 168-540 (567)
167 3q7m_A Lipoprotein YFGL, BAMB; 99.6 8.8E-13 3E-17 127.1 33.2 292 161-469 53-375 (376)
168 3fvz_A Peptidyl-glycine alpha- 99.6 5.3E-13 1.8E-17 126.1 29.7 261 192-474 23-324 (329)
169 1q7f_A NHL, brain tumor CG1071 99.6 1.9E-12 6.5E-17 119.6 32.5 238 189-473 26-281 (286)
170 3c5m_A Oligogalacturonate lyas 99.6 1.4E-13 4.7E-18 133.3 25.5 254 172-434 61-386 (396)
171 4a5s_A Dipeptidyl peptidase 4 99.6 5.8E-13 2E-17 140.1 28.8 270 194-471 18-397 (740)
172 3c5m_A Oligogalacturonate lyas 99.6 1.8E-13 6E-18 132.5 21.1 282 174-471 13-381 (396)
173 2dg1_A DRP35, lactonase; beta 99.6 2E-11 6.9E-16 115.2 34.4 243 184-471 36-313 (333)
174 3dsm_A Uncharacterized protein 99.5 9.1E-12 3.1E-16 117.5 30.4 270 168-450 14-319 (328)
175 3azo_A Aminopeptidase; POP fam 99.5 1.2E-12 4.1E-17 136.0 26.6 282 186-471 17-366 (662)
176 2oiz_A Aromatic amine dehydrog 99.5 5E-12 1.7E-16 121.0 26.6 259 202-473 13-335 (361)
177 1jof_A Carboxy-CIS,CIS-muconat 99.5 1.4E-11 4.9E-16 118.1 29.9 237 153-433 43-342 (365)
178 3azo_A Aminopeptidase; POP fam 99.5 7.4E-13 2.5E-17 137.5 22.0 288 85-389 18-373 (662)
179 3fvz_A Peptidyl-glycine alpha- 99.5 8.9E-12 3.1E-16 117.7 27.0 267 91-432 24-322 (329)
180 3sjl_D Methylamine dehydrogena 99.5 3E-11 1E-15 114.5 30.3 275 170-453 58-384 (386)
181 1q7f_A NHL, brain tumor CG1071 99.5 3.2E-11 1.1E-15 111.2 29.5 231 153-434 33-282 (286)
182 3dsm_A Uncharacterized protein 99.5 1.8E-11 6.3E-16 115.4 28.1 247 212-471 15-301 (328)
183 3no2_A Uncharacterized protein 99.5 3.1E-11 1.1E-15 110.7 27.9 237 161-440 5-260 (276)
184 2gop_A Trilobed protease; beta 99.5 9.3E-12 3.2E-16 118.2 25.4 253 193-471 15-330 (347)
185 3q7m_A Lipoprotein YFGL, BAMB; 99.5 5.9E-11 2E-15 114.2 29.3 254 160-429 102-375 (376)
186 2xdw_A Prolyl endopeptidase; a 99.5 3.6E-11 1.2E-15 125.9 29.1 243 190-474 122-416 (710)
187 1rwi_B Serine/threonine-protei 99.5 2.8E-11 9.7E-16 110.5 24.7 236 194-476 25-268 (270)
188 1qks_A Cytochrome CD1 nitrite 99.4 8.3E-10 2.8E-14 111.3 37.0 321 99-441 164-547 (567)
189 3no2_A Uncharacterized protein 99.4 8.9E-11 3E-15 107.7 26.1 206 203-459 4-230 (276)
190 2bkl_A Prolyl endopeptidase; m 99.4 4.3E-12 1.5E-16 132.5 19.5 247 87-355 117-406 (695)
191 2z2n_A Virginiamycin B lyase; 99.4 3.8E-09 1.3E-13 97.6 37.5 269 188-473 10-296 (299)
192 2mad_H Methylamine dehydrogena 99.4 2.7E-09 9.1E-14 102.2 36.7 256 172-439 48-357 (373)
193 2xdw_A Prolyl endopeptidase; a 99.4 3.7E-11 1.3E-15 125.7 25.5 221 171-434 151-416 (710)
194 2bkl_A Prolyl endopeptidase; m 99.4 2.8E-11 9.7E-16 126.3 24.4 241 190-474 118-399 (695)
195 2gop_A Trilobed protease; beta 99.4 1.1E-10 3.8E-15 110.8 26.4 235 170-431 42-330 (347)
196 3e5z_A Putative gluconolactona 99.4 1.4E-10 4.8E-15 107.6 26.4 238 184-473 19-287 (296)
197 3hxj_A Pyrrolo-quinoline quino 99.4 1.1E-11 3.8E-16 116.8 18.7 292 161-476 30-328 (330)
198 3e5z_A Putative gluconolactona 99.4 3.1E-10 1.1E-14 105.2 27.3 223 153-386 31-287 (296)
199 2mad_H Methylamine dehydrogena 99.4 5.6E-09 1.9E-13 100.0 35.9 266 199-474 27-352 (373)
200 3c75_H MADH, methylamine dehyd 99.3 2.8E-09 9.6E-14 102.9 31.1 260 171-440 99-410 (426)
201 1yr2_A Prolyl oligopeptidase; 99.3 1.9E-10 6.5E-15 120.9 24.6 241 190-474 160-443 (741)
202 1rwi_B Serine/threonine-protei 99.3 4.8E-10 1.6E-14 102.2 23.3 234 153-435 27-267 (270)
203 1kb0_A Quinohemoprotein alcoho 99.3 2.2E-09 7.7E-14 111.0 31.0 297 161-471 77-566 (677)
204 3sjl_D Methylamine dehydrogena 99.3 5.1E-09 1.7E-13 99.3 30.4 266 198-474 38-365 (386)
205 2dg1_A DRP35, lactonase; beta 99.3 5.9E-09 2E-13 98.2 30.2 262 91-375 6-300 (333)
206 2qc5_A Streptogramin B lactona 99.3 3.4E-08 1.2E-12 91.1 33.9 266 154-470 24-298 (300)
207 1mda_H Methylamine dehydrogena 99.3 1.8E-09 6.1E-14 102.5 24.2 266 172-453 47-367 (368)
208 2z2n_A Virginiamycin B lyase; 99.2 1.5E-07 5E-12 86.7 36.8 263 154-433 19-296 (299)
209 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 5.9E-09 2E-13 97.1 27.3 233 188-432 13-299 (314)
210 1yiq_A Quinohemoprotein alcoho 99.2 6.7E-09 2.3E-13 107.7 29.7 280 161-454 70-529 (689)
211 1kb0_A Quinohemoprotein alcoho 99.2 2.8E-09 9.7E-14 110.2 26.7 265 204-474 77-509 (677)
212 1yr2_A Prolyl oligopeptidase; 99.2 7E-10 2.4E-14 116.6 22.5 231 171-434 189-443 (741)
213 3hrp_A Uncharacterized protein 99.2 3.9E-08 1.3E-12 95.4 33.0 235 193-471 131-409 (409)
214 1yiq_A Quinohemoprotein alcoho 99.2 4.6E-09 1.6E-13 108.9 27.6 265 204-474 70-507 (689)
215 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 9.8E-09 3.4E-13 95.6 27.2 229 153-386 21-300 (314)
216 1xip_A Nucleoporin NUP159; bet 99.2 1E-09 3.4E-14 104.5 19.4 172 272-458 38-230 (388)
217 2hz6_A Endoplasmic reticulum t 99.2 1.2E-13 4E-18 132.7 -8.2 259 161-472 9-279 (369)
218 1xip_A Nucleoporin NUP159; bet 99.2 5.6E-09 1.9E-13 99.4 23.6 167 194-371 39-230 (388)
219 3hxj_A Pyrrolo-quinoline quino 99.1 8.4E-10 2.9E-14 103.8 14.9 253 198-470 25-282 (330)
220 3c75_H MADH, methylamine dehyd 99.1 4.7E-08 1.6E-12 94.3 25.7 261 202-474 82-404 (426)
221 3iuj_A Prolyl endopeptidase; h 99.1 4.9E-08 1.7E-12 101.6 27.6 237 190-435 126-408 (693)
222 2qc5_A Streptogramin B lactona 99.1 4.7E-07 1.6E-11 83.4 31.0 231 191-470 18-258 (300)
223 3g4e_A Regucalcin; six bladed 99.1 1.2E-07 4.2E-12 87.6 26.3 207 154-365 17-249 (297)
224 2hz6_A Endoplasmic reticulum t 99.0 4.9E-10 1.7E-14 107.4 8.2 196 203-454 8-215 (369)
225 1kv9_A Type II quinohemoprotei 99.0 8E-08 2.7E-12 99.3 24.5 266 204-474 66-490 (668)
226 3dr2_A Exported gluconolactona 99.0 1.3E-07 4.4E-12 87.9 23.3 226 185-463 37-298 (305)
227 2ad6_A Methanol dehydrogenase 99.0 3.9E-07 1.3E-11 92.2 28.6 280 161-454 62-518 (571)
228 4a2l_A BT_4663, two-component 99.0 5.4E-06 1.8E-10 87.7 38.6 300 162-472 184-526 (795)
229 1w6s_A Methanol dehydrogenase 99.0 2E-06 6.9E-11 87.0 33.6 283 161-454 62-527 (599)
230 3iuj_A Prolyl endopeptidase; h 99.0 4.3E-08 1.5E-12 102.1 21.4 237 87-348 125-408 (693)
231 3g4e_A Regucalcin; six bladed 98.9 1.2E-06 4.2E-11 80.9 28.2 225 188-422 8-263 (297)
232 1kv9_A Type II quinohemoprotei 98.9 5.9E-07 2E-11 92.8 28.6 268 161-442 66-498 (668)
233 3hrp_A Uncharacterized protein 98.9 6.2E-07 2.1E-11 86.9 26.9 220 153-383 134-408 (409)
234 2ghs_A AGR_C_1268P; regucalcin 98.9 2.1E-06 7E-11 80.5 27.9 212 154-373 53-290 (326)
235 2ad6_A Methanol dehydrogenase 98.9 2.5E-06 8.4E-11 86.3 30.0 266 204-474 62-496 (571)
236 1mda_H Methylamine dehydrogena 98.8 1.9E-07 6.4E-12 88.6 18.5 243 215-474 47-348 (368)
237 2qe8_A Uncharacterized protein 98.8 1E-06 3.5E-11 83.3 23.6 229 193-463 17-312 (343)
238 1flg_A Protein (quinoprotein e 98.8 6.1E-06 2.1E-10 83.6 30.3 277 162-454 69-540 (582)
239 4a2l_A BT_4663, two-component 98.8 3.4E-05 1.2E-09 81.6 37.3 300 162-472 226-571 (795)
240 3dr2_A Exported gluconolactona 98.8 2.4E-06 8.2E-11 79.2 25.1 213 154-377 49-299 (305)
241 2ghs_A AGR_C_1268P; regucalcin 98.8 6E-06 2.1E-10 77.3 28.1 215 194-422 50-293 (326)
242 2iwa_A Glutamine cyclotransfer 98.8 4.8E-06 1.6E-10 74.7 25.4 209 183-433 10-238 (266)
243 3nok_A Glutaminyl cyclase; bet 98.8 2.5E-06 8.5E-11 75.6 22.8 181 271-461 54-255 (268)
244 2iwa_A Glutamine cyclotransfer 98.8 5.3E-06 1.8E-10 74.4 25.1 193 273-474 22-239 (266)
245 1w6s_A Methanol dehydrogenase 98.8 7.3E-06 2.5E-10 82.9 28.6 266 204-474 62-505 (599)
246 1flg_A Protein (quinoprotein e 98.8 9.8E-06 3.4E-10 82.0 29.5 266 204-474 68-518 (582)
247 3v9f_A Two-component system se 98.7 5.9E-05 2E-09 79.5 36.2 301 161-471 268-610 (781)
248 3v9f_A Two-component system se 98.7 8.2E-05 2.8E-09 78.5 36.0 301 162-472 222-568 (781)
249 3nol_A Glutamine cyclotransfer 98.7 7.3E-06 2.5E-10 72.6 22.3 185 183-374 32-244 (262)
250 1npe_A Nidogen, entactin; glyc 98.6 8.7E-05 3E-09 67.1 29.2 192 272-473 36-239 (267)
251 3nol_A Glutamine cyclotransfer 98.6 1.3E-05 4.4E-10 71.1 22.0 179 272-462 43-246 (262)
252 3nok_A Glutaminyl cyclase; bet 98.6 1.1E-05 3.6E-10 71.6 20.7 182 183-372 44-253 (268)
253 3mbr_X Glutamine cyclotransfer 98.6 7.3E-05 2.5E-09 65.6 25.5 185 270-464 19-227 (243)
254 3mbr_X Glutamine cyclotransfer 98.6 3.5E-05 1.2E-09 67.7 23.1 185 183-374 10-223 (243)
255 1npe_A Nidogen, entactin; glyc 98.5 0.00038 1.3E-08 62.7 29.7 234 171-454 10-262 (267)
256 2ece_A 462AA long hypothetical 98.4 2.8E-05 9.5E-10 74.4 20.8 189 283-473 98-353 (462)
257 2xzh_A Clathrin heavy chain 1; 98.4 0.00091 3.1E-08 60.7 29.0 253 213-472 48-332 (365)
258 2qe8_A Uncharacterized protein 98.4 5.1E-05 1.7E-09 71.5 21.9 221 153-375 20-311 (343)
259 2ece_A 462AA long hypothetical 98.3 0.00044 1.5E-08 66.2 26.8 207 163-373 98-399 (462)
260 1ijq_A LDL receptor, low-densi 98.3 0.002 7E-08 59.6 31.8 222 245-473 3-239 (316)
261 1fwx_A Nitrous oxide reductase 98.3 0.00018 6.3E-09 71.2 23.0 247 207-472 18-361 (595)
262 1bpo_A Protein (clathrin); cla 98.3 0.0031 1.1E-07 59.6 30.1 252 214-472 48-331 (494)
263 3v64_C Agrin; beta propeller, 98.3 0.0023 7.7E-08 60.3 29.7 189 272-470 73-273 (349)
264 2fp8_A Strictosidine synthase; 98.2 0.00054 1.9E-08 63.7 25.1 227 152-386 21-314 (322)
265 3v65_B Low-density lipoprotein 98.2 0.001 3.6E-08 63.5 27.5 193 271-472 115-318 (386)
266 3p5b_L Low density lipoprotein 98.2 0.005 1.7E-07 59.1 32.3 199 270-473 110-321 (400)
267 1k3i_A Galactose oxidase precu 98.1 0.00043 1.5E-08 71.3 23.3 247 172-461 220-530 (656)
268 3sov_A LRP-6, low-density lipo 98.1 0.0064 2.2E-07 56.3 28.6 222 245-474 6-240 (318)
269 1k3i_A Galactose oxidase precu 98.1 0.00033 1.1E-08 72.2 21.7 184 283-473 256-498 (656)
270 2xzh_A Clathrin heavy chain 1; 98.0 0.0071 2.4E-07 55.0 30.5 252 169-436 47-336 (365)
271 2fp8_A Strictosidine synthase; 98.0 0.0022 7.4E-08 59.5 24.4 226 193-432 19-313 (322)
272 1fwx_A Nitrous oxide reductase 98.0 0.00036 1.2E-08 69.2 19.2 251 163-434 104-433 (595)
273 3m0c_C LDL receptor, low-densi 97.9 0.014 4.9E-07 60.9 30.2 225 244-473 396-633 (791)
274 2xe4_A Oligopeptidase B; hydro 97.9 0.00082 2.8E-08 70.4 21.2 191 194-430 175-398 (751)
275 2p4o_A Hypothetical protein; p 97.9 0.017 5.8E-07 53.0 31.8 221 183-454 23-269 (306)
276 1bpo_A Protein (clathrin); cla 97.7 0.032 1.1E-06 52.8 34.2 253 168-436 45-335 (494)
277 3v65_B Low-density lipoprotein 97.7 0.034 1.2E-06 52.9 32.8 216 171-393 96-326 (386)
278 2xe4_A Oligopeptidase B; hydro 97.7 0.0089 3E-07 62.5 24.9 241 155-434 179-460 (751)
279 3ei3_A DNA damage-binding prot 97.7 0.098 3.3E-06 57.1 39.9 291 170-474 531-915 (1158)
280 3amr_A 3-phytase; beta-propell 97.7 0.02 6.9E-07 52.9 23.2 232 203-472 39-329 (355)
281 3ott_A Two-component system se 97.6 0.08 2.7E-06 55.3 30.6 264 192-469 62-349 (758)
282 2p4o_A Hypothetical protein; p 97.6 0.041 1.4E-06 50.4 26.4 214 153-374 35-277 (306)
283 2vpj_A Kelch-like protein 12; 97.6 0.021 7.2E-07 52.1 22.5 223 204-434 15-280 (301)
284 3ei3_A DNA damage-binding prot 97.5 0.16 5.4E-06 55.5 36.8 351 92-473 555-1000(1158)
285 3v64_C Agrin; beta propeller, 97.5 0.06 2.1E-06 50.4 33.6 216 171-393 53-283 (349)
286 4a0p_A LRP6, LRP-6, low-densit 97.5 0.11 3.7E-06 52.9 31.6 221 244-474 7-239 (628)
287 2vpj_A Kelch-like protein 12; 97.5 0.024 8.1E-07 51.7 22.1 216 252-473 31-279 (301)
288 2xn4_A Kelch-like protein 2; s 97.5 0.023 7.7E-07 51.9 21.7 213 214-434 30-278 (302)
289 1n7d_A LDL receptor, low-densi 97.4 0.00074 2.5E-08 69.9 11.5 223 245-472 379-614 (699)
290 3m0c_C LDL receptor, low-densi 97.4 0.17 5.8E-06 52.8 31.6 219 212-439 402-639 (791)
291 2xn4_A Kelch-like protein 2; s 97.4 0.025 8.5E-07 51.7 20.3 212 253-473 31-277 (302)
292 3s94_A LRP-6, low-density lipo 97.3 0.14 4.8E-06 51.9 27.2 222 245-474 11-245 (619)
293 3tc9_A Hypothetical hydrolase; 97.3 0.12 4.3E-06 49.8 27.7 195 270-471 177-429 (430)
294 3ii7_A Kelch-like protein 7; p 97.3 0.054 1.8E-06 49.5 21.7 185 279-473 54-273 (306)
295 1xi4_A Clathrin heavy chain; a 97.3 0.028 9.7E-07 61.1 21.5 251 214-471 48-330 (1630)
296 1zgk_A Kelch-like ECH-associat 97.3 0.038 1.3E-06 50.6 20.3 224 202-433 23-288 (308)
297 1ijq_A LDL receptor, low-densi 97.2 0.14 4.6E-06 47.2 31.6 215 214-439 10-245 (316)
298 3ii7_A Kelch-like protein 7; p 97.2 0.13 4.4E-06 46.9 23.3 222 205-434 13-274 (306)
299 3sov_A LRP-6, low-density lipo 97.2 0.14 4.8E-06 47.1 31.7 218 171-393 13-246 (318)
300 2xbg_A YCF48-like protein; pho 97.2 0.15 5E-06 47.2 31.4 262 192-469 35-319 (327)
301 3qqz_A Putative uncharacterize 97.1 0.12 4.2E-06 45.7 26.7 193 187-382 21-250 (255)
302 3p5b_L Low density lipoprotein 97.1 0.2 7E-06 47.7 32.9 219 213-440 91-328 (400)
303 4asc_A Kelch repeat and BTB do 97.1 0.071 2.4E-06 48.9 20.5 175 207-387 8-223 (315)
304 4hw6_A Hypothetical protein, I 97.1 0.25 8.5E-06 47.7 25.7 149 320-471 231-432 (433)
305 4asc_A Kelch repeat and BTB do 97.0 0.19 6.7E-06 45.9 24.7 213 171-386 13-278 (315)
306 3amr_A 3-phytase; beta-propell 97.0 0.046 1.6E-06 50.5 17.6 143 326-473 40-209 (355)
307 1zgk_A Kelch-like ECH-associat 96.9 0.23 7.8E-06 45.3 22.4 211 171-386 39-288 (308)
308 2be1_A Serine/threonine-protei 96.9 0.053 1.8E-06 50.2 17.3 193 204-437 10-236 (339)
309 2woz_A Kelch repeat and BTB do 96.8 0.28 9.6E-06 44.9 22.9 105 280-387 109-233 (318)
310 1xi4_A Clathrin heavy chain; a 96.8 0.12 4.1E-06 56.3 21.1 215 168-393 45-297 (1630)
311 2p9w_A MAL S 1 allergenic prot 96.7 0.18 6.2E-06 46.1 18.7 155 316-472 12-215 (334)
312 3ott_A Two-component system se 96.7 0.79 2.7E-05 47.7 38.2 295 171-473 211-546 (758)
313 2woz_A Kelch repeat and BTB do 96.6 0.4 1.4E-05 43.8 22.1 172 293-472 80-287 (318)
314 3s94_A LRP-6, low-density lipo 96.5 0.9 3.1E-05 46.0 36.0 312 154-473 44-424 (619)
315 3tc9_A Hypothetical hydrolase; 96.4 0.3 1E-05 47.1 19.3 147 319-472 139-301 (430)
316 4hw6_A Hypothetical protein, I 96.4 0.44 1.5E-05 45.9 20.4 187 273-469 140-371 (433)
317 1n7d_A LDL receptor, low-densi 96.3 0.02 6.7E-07 59.2 10.8 216 213-440 385-622 (699)
318 3qhy_B Beta-lactamase inhibito 96.3 0.62 2.1E-05 41.9 24.3 240 193-454 24-265 (282)
319 2uvk_A YJHT; unknown function, 96.2 0.74 2.5E-05 42.8 21.1 229 162-393 21-350 (357)
320 3qqz_A Putative uncharacterize 96.1 0.67 2.3E-05 40.9 26.0 192 267-472 22-251 (255)
321 2p9w_A MAL S 1 allergenic prot 96.1 0.86 3E-05 41.7 20.8 193 192-385 12-265 (334)
322 3qhy_B Beta-lactamase inhibito 95.9 0.94 3.2E-05 40.7 22.5 219 235-472 25-246 (282)
323 3d2q_A Muscleblind-like protei 95.9 0.0037 1.3E-07 42.9 2.1 45 35-79 13-63 (70)
324 2uvk_A YJHT; unknown function, 95.5 1.6 5.5E-05 40.4 19.8 136 214-352 168-349 (357)
325 3kya_A Putative phosphatase; s 95.4 1.1 3.8E-05 43.7 18.6 149 318-471 140-340 (496)
326 4a0p_A LRP6, LRP-6, low-densit 95.3 2.9 0.0001 42.3 40.8 307 154-474 170-551 (628)
327 2xbg_A YCF48-like protein; pho 94.9 2.2 7.6E-05 39.1 31.8 218 235-465 37-272 (327)
328 3sre_A PON1, serum paraoxonase 94.8 2.6 8.8E-05 39.2 20.9 162 289-459 81-284 (355)
329 3kya_A Putative phosphatase; s 94.6 3.5 0.00012 40.1 28.4 152 320-474 250-477 (496)
330 2zwa_A Leucine carboxyl methyl 94.4 2.9 0.0001 42.9 19.7 189 241-436 396-639 (695)
331 3d2n_A Muscleblind-like protei 94.4 0.021 7.2E-07 40.4 2.5 46 34-79 15-64 (83)
332 2e5s_A Otthump00000018578; ZF- 93.9 0.012 4E-07 43.3 0.3 47 34-80 26-78 (98)
333 3pbp_A Nucleoporin NUP82; beta 93.8 4.7 0.00016 38.2 17.6 140 202-342 30-209 (452)
334 2rpp_A Muscleblind-like protei 93.7 0.025 8.5E-07 40.6 1.7 23 57-79 50-72 (89)
335 2rhk_C Cleavage and polyadenyl 93.7 0.019 6.5E-07 39.5 1.0 24 57-80 15-39 (72)
336 2rhk_C Cleavage and polyadenyl 93.6 0.036 1.2E-06 38.1 2.4 46 35-83 23-70 (72)
337 2ism_A Putative oxidoreductase 93.4 4.9 0.00017 37.2 25.6 53 410-463 276-337 (352)
338 3d2n_A Muscleblind-like protei 93.0 0.028 9.7E-07 39.8 1.1 23 58-80 9-33 (83)
339 3d2q_A Muscleblind-like protei 92.9 0.023 7.8E-07 39.0 0.4 23 57-79 5-29 (70)
340 2e5s_A Otthump00000018578; ZF- 92.7 0.017 5.9E-07 42.4 -0.4 24 57-80 19-44 (98)
341 2zwa_A Leucine carboxyl methyl 92.7 2.7 9.3E-05 43.2 15.9 186 280-473 397-636 (695)
342 3pbp_A Nucleoporin NUP82; beta 92.4 2.3 7.8E-05 40.3 13.3 92 375-472 40-158 (452)
343 2d9n_A Cleavage and polyadenyl 92.1 0.048 1.6E-06 38.1 1.2 26 57-82 9-35 (77)
344 2cqe_A KIAA1064 protein; CCCH 91.7 0.053 1.8E-06 39.9 1.2 24 56-79 11-35 (98)
345 2be1_A Serine/threonine-protei 91.6 0.21 7.1E-06 46.2 5.3 107 367-474 11-132 (339)
346 3mvd_K Regulator of chromosome 90.7 12 0.0004 35.6 31.6 233 234-472 75-374 (423)
347 2rpp_A Muscleblind-like protei 90.3 0.06 2E-06 38.6 0.3 24 58-81 17-42 (89)
348 2d9n_A Cleavage and polyadenyl 89.7 0.23 7.8E-06 34.6 2.9 45 36-83 18-64 (77)
349 3sre_A PON1, serum paraoxonase 89.5 13 0.00045 34.4 20.2 136 334-472 81-252 (355)
350 3f7f_A Nucleoporin NUP120; nuc 87.2 11 0.00038 38.2 14.2 112 273-386 163-306 (729)
351 1tl2_A L10, protein (tachylect 86.2 6.6 0.00023 33.6 10.2 100 193-296 41-159 (236)
352 4d9s_A UVB-resistance protein 85.1 26 0.00088 33.0 34.7 273 192-472 15-357 (406)
353 1tl2_A L10, protein (tachylect 84.1 19 0.00063 30.8 12.0 179 283-475 6-211 (236)
354 1a12_A RCC1, regulator of chro 82.8 32 0.0011 32.4 32.1 233 232-472 57-365 (413)
355 3of7_A Regulator of chromosome 81.2 40 0.0014 32.4 27.4 115 271-385 147-285 (473)
356 4gq2_M Nucleoporin NUP120; bet 80.4 9.5 0.00032 40.7 11.2 41 193-233 236-276 (950)
357 3sbq_A Nitrous-oxide reductase 80.0 5.7 0.00019 39.0 8.3 91 377-472 299-408 (638)
358 3s25_A Hypothetical 7-bladed b 77.8 39 0.0013 30.3 27.7 195 252-469 88-290 (302)
359 3f7f_A Nucleoporin NUP120; nuc 75.8 15 0.00052 37.3 10.3 39 193-233 222-260 (729)
360 3kci_A Probable E3 ubiquitin-p 72.2 63 0.0021 30.0 26.5 263 204-472 10-345 (389)
361 4gq2_M Nucleoporin NUP120; bet 70.2 31 0.0011 36.7 11.8 36 318-353 237-274 (950)
362 2ism_A Putative oxidoreductase 69.0 69 0.0024 29.2 20.9 70 272-346 31-115 (352)
363 3a9g_A Putative uncharacterize 67.5 75 0.0026 29.1 17.9 69 317-386 29-115 (354)
364 1m9o_A Tristetraproline; Cys3H 65.8 2.3 8E-05 29.3 1.4 25 57-81 11-37 (77)
365 3mvd_K Regulator of chromosome 63.5 98 0.0034 29.0 39.6 189 194-384 76-321 (423)
366 1cru_A Protein (soluble quinop 63.1 1.1E+02 0.0036 29.3 20.7 56 317-373 27-98 (454)
367 4d9s_A UVB-resistance protein 61.5 1.1E+02 0.0036 28.7 32.9 191 193-385 68-305 (406)
368 4fhn_B Nucleoporin NUP120; pro 60.9 6.7 0.00023 42.9 4.6 40 194-233 239-278 (1139)
369 2cqe_A KIAA1064 protein; CCCH 58.0 3.4 0.00012 30.1 1.1 23 59-81 37-61 (98)
370 4fhn_B Nucleoporin NUP120; pro 57.7 22 0.00074 38.9 7.9 28 326-353 249-276 (1139)
371 1a12_A RCC1, regulator of chro 56.5 1.3E+02 0.0044 28.1 33.5 190 193-384 59-313 (413)
372 3kci_A Probable E3 ubiquitin-p 56.3 1.3E+02 0.0043 27.9 29.5 222 166-387 67-347 (389)
373 3s25_A Hypothetical 7-bladed b 50.4 1.4E+02 0.0047 26.6 24.0 145 291-458 88-239 (302)
374 3a9g_A Putative uncharacterize 48.8 1.6E+02 0.0054 26.8 26.5 31 193-225 29-59 (354)
375 3of7_A Regulator of chromosome 48.2 1.9E+02 0.0065 27.6 28.7 152 234-385 148-341 (473)
376 2d9m_A Zinc finger CCCH-type d 46.7 6.2 0.00021 26.3 0.9 24 57-80 19-43 (69)
377 3u1l_A PRE-mRNA-splicing facto 46.5 5 0.00017 34.8 0.5 26 57-83 69-95 (240)
378 1wp5_A Topoisomerase IV; broke 38.2 2.2E+02 0.0076 25.5 13.8 147 326-472 5-174 (323)
379 3uc1_A DNA gyrase subunit A; D 37.7 2.3E+02 0.0078 25.5 22.9 189 271-463 94-321 (327)
380 1bhu_A SMPI, metalloproteinase 33.1 14 0.00049 24.6 1.0 32 34-78 42-73 (102)
381 2g8s_A Glucose/sorbosone dehyd 31.7 2.9E+02 0.0099 24.9 27.7 58 411-471 288-351 (353)
382 1cru_A Protein (soluble quinop 29.3 3.7E+02 0.013 25.4 14.3 36 193-228 27-62 (454)
383 2e2s_A Agelenin; cystine knot, 25.4 11 0.00038 20.7 -0.5 26 153-178 7-32 (36)
384 3q6k_A 43.2 kDa salivary prote 21.9 4.7E+02 0.016 24.1 18.8 135 336-472 123-306 (381)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3e-44 Score=370.79 Aligned_cols=379 Identities=15% Similarity=0.193 Sum_probs=289.9
Q ss_pred CCCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCC----C--CCCccccccCcC------------------
Q 011711 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTV----P--NKSSLDCSTGSD------------------ 139 (479)
Q Consensus 84 ~~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~----~--~~~~~~~~~~~~------------------ 139 (479)
..+.||...|++++|||+|++||||+.||+|+|||..+..... + ......+....+
T Consensus 53 ~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~ 132 (611)
T 1nr0_A 53 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF 132 (611)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEE
T ss_pred eEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEE
Confidence 3568999999999999999999999999999999986432110 0 000000000000
Q ss_pred ---CCCCeeeeeecCCCeEE--EeccCC-eeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCC
Q 011711 140 ---DSGSKRTLERTTPKNVC--YHWLSG-NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD 213 (479)
Q Consensus 140 ---~~~~~~~~~~~~~~~~c--~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~D 213 (479)
.......+.+|.....+ +.+... .+++|+.|++|++||..+. +.+..+.+|.+.|.+++|+|++++|++++.|
T Consensus 133 ~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-~~~~~l~~H~~~V~~v~fspdg~~las~s~D 211 (611)
T 1nr0_A 133 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-KFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 211 (611)
T ss_dssp ETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-EEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC-eEeeeeccccCceEEEEECCCCCEEEEEECC
Confidence 01112234455444444 444444 5999999999999998877 7889999999999999999999999999999
Q ss_pred CcEEEEECCCCceEEEEe--------cCCceeEEEe--CCCEEEE-EcCCeEEEEEcCCCceE-----------------
Q 011711 214 GTVQLWDCHTGQSASVIN--------LGAEVGSLIC--EGPWVFV-GMPNVVKAWHIESSAEF----------------- 265 (479)
Q Consensus 214 g~v~vwd~~~~~~~~~~~--------~~~~~~~~~~--~~~~l~~-~~~~~i~v~~~~~~~~~----------------- 265 (479)
++|++||+.+++....+. +...+.++.+ +++++++ +.|+.|++||+.+++..
T Consensus 212 ~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~ 291 (611)
T 1nr0_A 212 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 291 (611)
T ss_dssp SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE
T ss_pred CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE
Confidence 999999999999888873 4455666654 6777765 58899999999876532
Q ss_pred ---------------------------EecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeee-cCC
Q 011711 266 ---------------------------SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALL-KGH 315 (479)
Q Consensus 266 ---------------------------~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-~~h 315 (479)
.+.+|...|.+++|+|+ +|++++.|+.|++||+.++.. ...+ .+|
T Consensus 292 ~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~-----~~~~~~~h 366 (611)
T 1nr0_A 292 WTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS-----NRVFPDVH 366 (611)
T ss_dssp ECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----EECSSCSC
T ss_pred EcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce-----eeecccCC
Confidence 23478899999999988 999999999999999987642 2222 679
Q ss_pred CCCeEEEEEc-CCEEEEEeCCCeEEEEECCCCcE-----------------------------------------EEEEe
Q 011711 316 TRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEA-----------------------------------------VMTLN 353 (479)
Q Consensus 316 ~~~i~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~-----------------------------------------~~~~~ 353 (479)
...|.+++++ +..+++++.|+++++|++.++.. +..+.
T Consensus 367 ~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~ 446 (611)
T 1nr0_A 367 ATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVP 446 (611)
T ss_dssp SSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEE
T ss_pred cceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeee
Confidence 9999999997 77899999999999999765321 11122
Q ss_pred CCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcce-EEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeec
Q 011711 354 GHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNL-EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (479)
Q Consensus 354 ~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 430 (479)
|...+.+++++ +++|++++.|++|++||+.+.... .....|...+..+++ +|+|+ +|++++.|++|++||+
T Consensus 447 -~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~f----spdg~-~las~s~d~~v~~w~~ 520 (611)
T 1nr0_A 447 -ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAF----SNNGA-FLVATDQSRKVIPYSV 520 (611)
T ss_dssp -CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEE----CTTSS-EEEEEETTSCEEEEEG
T ss_pred -cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEE----CCCCC-EEEEEcCCCCEEEEEc
Confidence 44567777776 789999999999999999765421 122445555555555 69998 8999999999999999
Q ss_pred CC-Cceeee--ee-ccCceEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 431 PS-FMERGR--IF-SRREVRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 431 ~~-~~~~~~--~~-~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
.+ ++.... .. |...|.+++|+||| +|++|+.|++|++|++..+.
T Consensus 521 ~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 521 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred CCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 87 555443 22 78899999999999 99999999999999998654
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.5e-43 Score=359.90 Aligned_cols=361 Identities=15% Similarity=0.186 Sum_probs=282.6
Q ss_pred CCCCCCCCCCCCCCCCCCce-eccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCC--eEEEecc
Q 011711 84 LPVSNHKKSPPSYNCPKNNV-RVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK--NVCYHWL 160 (479)
Q Consensus 84 ~~~~gh~~~i~~~~~s~~g~-~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~c~~~~ 160 (479)
..+.||...|++++|+|++. .|++|+.|+++++|+..... ....+.+|... .+++.+.
T Consensus 141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-------------------~~~~l~~H~~~V~~v~fspd 201 (611)
T 1nr0_A 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-------------------FKSTFGEHTKFVHSVRYNPD 201 (611)
T ss_dssp BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-------------------EEEEECCCSSCEEEEEECTT
T ss_pred ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-------------------EeeeeccccCceEEEEECCC
Confidence 35689999999999999997 59999999999999743211 11223334333 5566777
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEe-------cccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec-
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLE-------GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL- 232 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~-------~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~- 232 (479)
+..+++|+.|++|++||+.++ +.+..+. +|.+.|.+++|+|++++|+|++.|++|++||+.+++.+..+..
T Consensus 202 g~~las~s~D~~i~lwd~~~g-~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~ 280 (611)
T 1nr0_A 202 GSLFASTGGDGTIVLYNGVDG-TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 280 (611)
T ss_dssp SSEEEEEETTSCEEEEETTTC-CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCEEEEEECCCcEEEEECCCC-cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence 779999999999999999888 6677774 8999999999999999999999999999999999887765532
Q ss_pred -------------------------------------------CCceeEEE--eCCCEEEEE-cCCeEEEEEcCCCceEE
Q 011711 233 -------------------------------------------GAEVGSLI--CEGPWVFVG-MPNVVKAWHIESSAEFS 266 (479)
Q Consensus 233 -------------------------------------------~~~~~~~~--~~~~~l~~~-~~~~i~v~~~~~~~~~~ 266 (479)
...+.++. +++++++++ .|+.|++||+.++....
T Consensus 281 ~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~ 360 (611)
T 1nr0_A 281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR 360 (611)
T ss_dssp SSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee
Confidence 12333444 367777654 89999999999988765
Q ss_pred e--cCCCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCccc------------------------------------
Q 011711 267 L--DGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQ------------------------------------ 307 (479)
Q Consensus 267 ~--~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~------------------------------------ 307 (479)
. ..|...|.+++++++ .+++++.|+.+++|++.........
T Consensus 361 ~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~ 440 (611)
T 1nr0_A 361 VFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 440 (611)
T ss_dssp CSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT
T ss_pred ecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCC
Confidence 4 578999999999877 8999999999999997654321000
Q ss_pred ceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcE--EEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEE
Q 011711 308 LAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEA--VMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVW 381 (479)
Q Consensus 308 ~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iw 381 (479)
....+ .|...+.+++|+ +++|++|+.|++|++||+.+++. +.. .+|...|.+++++ +++|++++.|++|++|
T Consensus 441 ~~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w 518 (611)
T 1nr0_A 441 KLTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPY 518 (611)
T ss_dssp EEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ceeee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEE
Confidence 00111 255678899996 89999999999999999987654 344 6799999999998 7899999999999999
Q ss_pred EcCC-CcceEE-ec-cccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceee--ee-ec-cCceEEEEECCCc
Q 011711 382 IMTE-EGNLEV-AY-THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERG--RI-FS-RREVRVIETGPDG 454 (479)
Q Consensus 382 d~~~-~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~-~~-~~~v~~l~~s~~g 454 (479)
|+.+ .+.... .. .|...+..+++ +|+|+ +|++++.|++|++||++++.... .+ .| ...|.+++|+|++
T Consensus 519 ~~~~~~~~~~~~~~~~H~~~V~~v~f----spdg~-~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~ 593 (611)
T 1nr0_A 519 SVANNFELAHTNSWTFHTAKVACVSW----SPDNV-RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET 593 (611)
T ss_dssp EGGGTTEESCCCCCCCCSSCEEEEEE----CTTSS-EEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETT
T ss_pred EcCCCCceeeeeeeeecccceeEEEE----CCCCC-EEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCC
Confidence 9987 332221 12 25555544444 69998 89999999999999998865322 22 24 6889999999999
Q ss_pred eEEEEcCCCcEEEEEec
Q 011711 455 LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 455 ~l~sg~~dg~v~vw~~~ 471 (479)
.|++++.||+|++|++.
T Consensus 594 ~l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 594 TIVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEEEEETTSCEEEEECC
T ss_pred EEEEecCCCCEEEEecc
Confidence 99999999999999973
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.6e-42 Score=353.06 Aligned_cols=349 Identities=21% Similarity=0.327 Sum_probs=291.4
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCC--CeEEEeccCC
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP--KNVCYHWLSG 162 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~~~ 162 (479)
.+.+|...|.+++|+|+|.++++++.||++++|+..... ...+..+.. ..+++.+...
T Consensus 216 ~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~--------------------~~~~~~~~~~v~~v~~~~d~~ 275 (577)
T 2ymu_A 216 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL--------------------LQTLTGHSSSVNGVAFRPDGQ 275 (577)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE--------------------EEEECCCSSCEEEEEECTTSS
T ss_pred EEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCE--------------------EEEEecCCCCEEEEEEcCCCC
Confidence 357899999999999999999999999999999743211 111222222 3456667777
Q ss_pred eeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEE--
Q 011711 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI-- 240 (479)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~-- 240 (479)
.+++++.|+.|++|+... +.+..+.+|...|.+++|+|++++|++++.|++|++||...........+...+.++.
T Consensus 276 ~l~~~~~d~~i~~w~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s 353 (577)
T 2ymu_A 276 TIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFS 353 (577)
T ss_dssp EEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEEC
T ss_pred EEEEEeCCCEEEEEeCCC--cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEEC
Confidence 899999999999999743 5778899999999999999999999999999999999987655444334455566555
Q ss_pred eCCCEEEEE-cCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCC
Q 011711 241 CEGPWVFVG-MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (479)
Q Consensus 241 ~~~~~l~~~-~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~ 317 (479)
+++++++++ .++.+++|+........+..|...|.+++++++ +|++++.|+.|++||... +....+.+|..
T Consensus 354 ~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~------~~~~~~~~~~~ 427 (577)
T 2ymu_A 354 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG------QLLQTLTGHSS 427 (577)
T ss_dssp TTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC------CEEEEEECCSS
T ss_pred CCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC------CEEEEecCCCC
Confidence 477777765 789999999877666778899999999999988 899999999999999533 34677889999
Q ss_pred CeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEec
Q 011711 318 PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAY 393 (479)
Q Consensus 318 ~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 393 (479)
.|++++|+ +++|++++.|++|++||. +++.+..+.+|...|.+++++ +++|++++.|+.|++||. +++.+..+.
T Consensus 428 ~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~ 505 (577)
T 2ymu_A 428 SVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT 505 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE
T ss_pred CeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe
Confidence 99999996 889999999999999996 578889999999999999997 789999999999999996 567777788
Q ss_pred cccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEECCCc-eEEEEcCCCcEEEEE
Q 011711 394 THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDG-LFFTGDGTGMLSVWK 469 (479)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~ 469 (479)
.|...+..+++ +|+++ +|++++.|+.|++||. +++.+..+. |...|++++|+||| +|+|++.||+|++||
T Consensus 506 ~h~~~v~~l~~----s~dg~-~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 506 GHSSSVRGVAF----SPDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CCSSCEEEEEE----CTTSS-CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEEE----cCCCC-EEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 88877766665 59998 7889999999999996 566666665 58899999999999 999999999999997
No 4
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.8e-42 Score=329.87 Aligned_cols=297 Identities=15% Similarity=0.123 Sum_probs=240.0
Q ss_pred CCCCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCC
Q 011711 83 TLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSG 162 (479)
Q Consensus 83 ~~~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 162 (479)
......|...|.+++|+|||++|++++ |+++|+|+.
T Consensus 23 ~~~~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~------------------------------------------- 58 (344)
T 4gqb_B 23 PNAPACMERQLEAARYRSDGALLLGAS-SLSGRCWAG------------------------------------------- 58 (344)
T ss_dssp CCSCSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCE-------------------------------------------
T ss_pred CCCcccccCCEEEEEECCCCCEEEEEe-CCceEEeec-------------------------------------------
Confidence 333456777889999999999999998 999999951
Q ss_pred eeEeCCCCCeEEEeecCCC---ceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEE
Q 011711 163 NCVKGDECRFWHSWFCGEG---FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSL 239 (479)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~---~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~ 239 (479)
.+.+|+.... .........|...|.+++|+|++ .|++|+.||+|+|||+.+++......
T Consensus 59 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~-------- 120 (344)
T 4gqb_B 59 ---------SLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSK-------- 120 (344)
T ss_dssp ---------EEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEE--------
T ss_pred ---------eeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEee--------
Confidence 1122221100 01122233577889999999985 68899999999999999988665443
Q ss_pred EeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCC
Q 011711 240 ICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (479)
Q Consensus 240 ~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~ 317 (479)
....+|...|.+++|+++ +|++|+.||.|++||+.++. .+..+.+|..
T Consensus 121 -------------------------~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~-----~~~~~~~h~~ 170 (344)
T 4gqb_B 121 -------------------------FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV-----VLSSYRAHAA 170 (344)
T ss_dssp -------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEECCCSS
T ss_pred -------------------------ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-----EEEEEcCcCC
Confidence 234579999999999988 99999999999999998764 4788899999
Q ss_pred CeEEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEe--CCCCCcEEEEEc---CCEEEEEeCCCeEEEEEcCCCcce
Q 011711 318 PVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLN--GHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNL 389 (479)
Q Consensus 318 ~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~h~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~ 389 (479)
.|.+++|+ ..+|++++.|++|++||++++++...+. .|...+.++.+. +.+|++|+.||.|++||+++++.+
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~ 250 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV 250 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE
Confidence 99999996 3578999999999999999999988875 445567888886 468999999999999999999999
Q ss_pred EEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc--eEEEEcCCCcEEE
Q 011711 390 EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG--LFFTGDGTGMLSV 467 (479)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sg~~dg~v~v 467 (479)
..+..|...+..+++ +|++..+|++++.|++|+|||+.+++......|.+.|++++|+|++ +|++|+.||+|++
T Consensus 251 ~~~~~h~~~v~~v~f----sp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~ 326 (344)
T 4gqb_B 251 LSSAVHSQCVTGLVF----SPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVH 326 (344)
T ss_dssp EEEECCSSCEEEEEE----CSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred EEEcCCCCCEEEEEE----ccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence 999888887766666 5998778999999999999999999877666678999999999998 6779999999999
Q ss_pred EEeccCCC
Q 011711 468 WKILAKPN 475 (479)
Q Consensus 468 w~~~~~~~ 475 (479)
|++.+++.
T Consensus 327 w~v~~~~~ 334 (344)
T 4gqb_B 327 HVVPTEPL 334 (344)
T ss_dssp EECCC---
T ss_pred EECCCCCC
Confidence 99987654
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.1e-42 Score=337.47 Aligned_cols=281 Identities=21% Similarity=0.289 Sum_probs=244.3
Q ss_pred CCCCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCC
Q 011711 83 TLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSG 162 (479)
Q Consensus 83 ~~~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 162 (479)
...+.||..+|++++|+|++.++++|+.||+|+|||.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~------------------------------------------- 137 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY------------------------------------------- 137 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEET-------------------------------------------
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC-------------------------------------------
Confidence 3355788888888888888888888887777777743
Q ss_pred eeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeC
Q 011711 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICE 242 (479)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 242 (479)
.++ +....+++|.+.|++++|+|++++|++|+.|++|++||+.+++++..+
T Consensus 138 ----------------~~~-~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~------------ 188 (410)
T 1vyh_C 138 ----------------ETG-DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM------------ 188 (410)
T ss_dssp ----------------TTC-CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC------------
T ss_pred ----------------CCC-cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE------------
Confidence 223 345678899999999999999999999999999999999887765433
Q ss_pred CCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeE
Q 011711 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT 320 (479)
Q Consensus 243 ~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~ 320 (479)
.+|...|.+++|+|+ .|++|+.|+.|++||+.++. ....+.+|...|.
T Consensus 189 -------------------------~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-----~~~~~~~h~~~v~ 238 (410)
T 1vyh_C 189 -------------------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-----CVKTFTGHREWVR 238 (410)
T ss_dssp -------------------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCEE
T ss_pred -------------------------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----EEEEEeCCCccEE
Confidence 468889999999987 89999999999999998764 4677889999999
Q ss_pred EEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc----------------------CCEEEEEeCCC
Q 011711 321 CLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW----------------------DQYLLSCSLDN 376 (479)
Q Consensus 321 ~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~----------------------~~~l~s~s~dg 376 (479)
++.++ +.++++|+.|++|++||++++++...+.+|...|.++.+. +.+|++|+.|+
T Consensus 239 ~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~ 318 (410)
T 1vyh_C 239 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318 (410)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence 99996 8899999999999999999999999999999999999986 35899999999
Q ss_pred eEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEECCCc-
Q 011711 377 TIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDG- 454 (479)
Q Consensus 377 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g- 454 (479)
.|++||++++..+..+..|...+..+.+ +|+++ +|++++.|+.|++||+.+++.+..+. |...|++++|+|++
T Consensus 319 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~----~~~g~-~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 393 (410)
T 1vyh_C 319 TIKMWDVSTGMCLMTLVGHDNWVRGVLF----HSGGK-FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 393 (410)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEE----CSSSS-CEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSS
T ss_pred eEEEEECCCCceEEEEECCCCcEEEEEE----cCCCC-EEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCC
Confidence 9999999999888888888777666555 58888 78899999999999999998887776 57789999999999
Q ss_pred eEEEEcCCCcEEEEEe
Q 011711 455 LFFTGDGTGMLSVWKI 470 (479)
Q Consensus 455 ~l~sg~~dg~v~vw~~ 470 (479)
+|++|+.||.|++|++
T Consensus 394 ~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 394 YVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CEEEEETTSEEEEEC-
T ss_pred EEEEEeCCCcEEEEeC
Confidence 9999999999999986
No 6
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.4e-42 Score=334.17 Aligned_cols=297 Identities=15% Similarity=0.157 Sum_probs=237.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccC
Q 011711 82 QTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS 161 (479)
Q Consensus 82 p~~~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 161 (479)
|.....+|+..|++++|||||++||+||.|+ +++||
T Consensus 34 p~~~p~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd------------------------------------------- 69 (357)
T 4g56_B 34 PVTAPACMEVQIGAVRYRRDGALLLAASSLS-SRTWG------------------------------------------- 69 (357)
T ss_dssp ------CCCSEEEEEEECSSSCEEEEEECSS-SSSCC-------------------------------------------
T ss_pred CCCCcccccCCEEEEEECCCCCEEEEEcCCC-Ccccc-------------------------------------------
Confidence 4444467999999999999999999999664 57883
Q ss_pred CeeEeCCCCCeEEEeecCCCc---eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeE
Q 011711 162 GNCVKGDECRFWHSWFCGEGF---TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS 238 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~---~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~ 238 (479)
+.|++|+..++. .......+|...|++++|+|++. +++++.||+|+|||+.+++......
T Consensus 70 ---------~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~------- 132 (357)
T 4g56_B 70 ---------GSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNK------- 132 (357)
T ss_dssp ---------EEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCC-------
T ss_pred ---------CeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEe-------
Confidence 567888876552 23445668999999999999975 5678889999999998876442211
Q ss_pred EEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCC
Q 011711 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT 316 (479)
Q Consensus 239 ~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~ 316 (479)
....+|...|.+++|+++ +|++|+.||.|++||+.++. ....+.+|.
T Consensus 133 --------------------------~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~-----~~~~~~~h~ 181 (357)
T 4g56_B 133 --------------------------FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA-----VLKSYNAHS 181 (357)
T ss_dssp --------------------------EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE-----EEEEECCCS
T ss_pred --------------------------eccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-----EEEEEcCCC
Confidence 234578999999999987 99999999999999998754 467789999
Q ss_pred CCeEEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEe--CCCCCcEEEEEc---CCEEEEEeCCCeEEEEEcCCCcc
Q 011711 317 RPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLN--GHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGN 388 (479)
Q Consensus 317 ~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~h~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~ 388 (479)
..|++++|+ ..++++++.||+|++||+++++++..+. .|...+.++.++ +.+|++++.|+.|++||+++++.
T Consensus 182 ~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~ 261 (357)
T 4g56_B 182 SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS 261 (357)
T ss_dssp SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG
T ss_pred CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE
Confidence 999999996 3579999999999999999988776654 466678899986 46899999999999999999998
Q ss_pred eEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECC-Cc-eEEEEcCCCcEE
Q 011711 389 LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGP-DG-LFFTGDGTGMLS 466 (479)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~-~g-~l~sg~~dg~v~ 466 (479)
+..+..+...+..+++ +|++..+|++++.|++|+|||+++++.+..+.|.+.|++++|+| ++ +|++++.||+|+
T Consensus 262 ~~~~~~~~~~v~~l~~----sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~ 337 (357)
T 4g56_B 262 AQTSAVHSQNITGLAY----SYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVL 337 (357)
T ss_dssp CEEECCCSSCEEEEEE----CSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred eEEEeccceeEEEEEE----cCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEE
Confidence 8888888887766665 58887789999999999999999999988888899999999998 67 999999999999
Q ss_pred EEEeccCC
Q 011711 467 VWKILAKP 474 (479)
Q Consensus 467 vw~~~~~~ 474 (479)
+|++....
T Consensus 338 iW~~~~~~ 345 (357)
T 4g56_B 338 HHHLPSEG 345 (357)
T ss_dssp EEECC---
T ss_pred EEECCCCC
Confidence 99997643
No 7
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.6e-41 Score=320.50 Aligned_cols=280 Identities=20% Similarity=0.269 Sum_probs=240.0
Q ss_pred CCCCCCCCCCCCCCCC----ceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccC
Q 011711 86 VSNHKKSPPSYNCPKN----NVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS 161 (479)
Q Consensus 86 ~~gh~~~i~~~~~s~~----g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 161 (479)
+.+|.+.|++++|+|+ +.+|+|||.||+++||+..
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~----------------------------------------- 66 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWR----------------------------------------- 66 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEE-----------------------------------------
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECC-----------------------------------------
Confidence 4679999999999875 5677787777777777432
Q ss_pred CeeEeCCCCCeEEEeecCCC-ceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEE
Q 011711 162 GNCVKGDECRFWHSWFCGEG-FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI 240 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~-~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 240 (479)
++ ......+.+|...|.+++|++++.++++++.|++|++||+.+++.+..+.
T Consensus 67 ------------------~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~--------- 119 (321)
T 3ow8_A 67 ------------------DERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSID--------- 119 (321)
T ss_dssp ------------------TTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE---------
T ss_pred ------------------CCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEe---------
Confidence 11 12345688999999999999999999999999999999999988776553
Q ss_pred eCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCC
Q 011711 241 CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (479)
Q Consensus 241 ~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~ 318 (479)
.+...+.+++|+|+ +|++|+.||.|++||+.++. ....+..|...
T Consensus 120 ----------------------------~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~-----~~~~~~~~~~~ 166 (321)
T 3ow8_A 120 ----------------------------AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK-----KEYSLDTRGKF 166 (321)
T ss_dssp ----------------------------CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS-----EEEEEECSSSC
T ss_pred ----------------------------CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc-----eeEEecCCCce
Confidence 35566778889887 99999999999999998764 35667789999
Q ss_pred eEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEecc
Q 011711 319 VTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYT 394 (479)
Q Consensus 319 i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 394 (479)
|.+++|+ +++|++|+.||.|++||+++++++.++.+|...|.++.++ +++|++++.|+.|++||+++......+..
T Consensus 167 v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 246 (321)
T 3ow8_A 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG 246 (321)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC
Confidence 9999996 8999999999999999999999999999999999999997 68999999999999999999888888888
Q ss_pred ccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEECCCc-eEEEEcCCCcEEEEEec
Q 011711 395 HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDG-LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~ 471 (479)
|...+..+.+ +|+++ +|++++.|++|++||+.+++.+..+. |...|.+++|+|++ .|++++.||.|++||..
T Consensus 247 h~~~v~~~~~----sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 247 HASWVLNVAF----CPDDT-HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CSSCEEEEEE----CTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCceEEEEE----CCCCC-EEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 8777665555 59988 89999999999999999999888875 57889999999999 99999999999999963
No 8
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.2e-40 Score=338.51 Aligned_cols=351 Identities=21% Similarity=0.335 Sum_probs=292.4
Q ss_pred CCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCe--EEEeccCCe
Q 011711 86 VSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKN--VCYHWLSGN 163 (479)
Q Consensus 86 ~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~c~~~~~~~ 163 (479)
|.||++.|++++|||||++||||+.||+|+|||..+ ...+.+.+|.... +++.+.+..
T Consensus 12 L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~--------------------~~~~~l~gh~~~V~~l~fspdg~~ 71 (577)
T 2ymu_A 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--------------------QLLQTLTGHSSSVWGVAFSPDGQT 71 (577)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS--------------------CEEEEEECCSSCEEEEEECTTSSE
T ss_pred ECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCC--------------------CEEEEEeCCCCCEEEEEECCCCCE
Confidence 789999999999999999999999999999997321 1223444555554 455666778
Q ss_pred eEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEe--
Q 011711 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC-- 241 (479)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-- 241 (479)
+++++.|++|++||. ++ +++..+.+|...|.+++|+|++++|++++.|+.+++|+...............+..+..
T Consensus 72 las~~~d~~i~vWd~-~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 149 (577)
T 2ymu_A 72 IASASDDKTVKLWNR-NG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP 149 (577)
T ss_dssp EEEEETTSCEEEEET-TS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECT
T ss_pred EEEEeCCCEEEEEEC-CC-CEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeec
Confidence 999999999999996 44 67889999999999999999999999999999999999876655554445555555543
Q ss_pred CCCEEE-EEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCC
Q 011711 242 EGPWVF-VGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (479)
Q Consensus 242 ~~~~l~-~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~ 318 (479)
++..++ .+.++.+++|+...........+...|.++.+.++ .+++++.||.|++||... +....+.+|...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~------~~~~~~~~~~~~ 223 (577)
T 2ymu_A 150 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG------QLLQTLTGHSSS 223 (577)
T ss_dssp TSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS------CEEEEEECCSSC
T ss_pred CCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCC------cEEEEEecCCCC
Confidence 455444 56788999999888777788899999999999988 899999999999999643 346778899999
Q ss_pred eEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEecc
Q 011711 319 VTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYT 394 (479)
Q Consensus 319 i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 394 (479)
|.+++|+ +.+|++++.|+.|++||. +++.+..+.+|...|.++.+. ++.+++++.|+.|++||.. .+.+..+..
T Consensus 224 v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~ 301 (577)
T 2ymu_A 224 VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTG 301 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECC
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEec
Confidence 9999997 789999999999999995 568889999999999999987 6899999999999999974 455666777
Q ss_pred ccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcCCCcEEEEEec
Q 011711 395 HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~ 471 (479)
|...+..+++ +|+++ .+++++.|+.|++||...........+...+.+++|+|++ .|++|+.||.|++|+..
T Consensus 302 h~~~v~~~~~----~~~~~-~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~ 374 (577)
T 2ymu_A 302 HSSSVWGVAF----SPDGQ-TIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 374 (577)
T ss_dssp CSSCEEEEEE----CTTSS-EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCCeEEEEE----CCCCC-EEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC
Confidence 7776655555 58888 8899999999999998776555444568899999999999 99999999999999964
No 9
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.4e-38 Score=314.29 Aligned_cols=316 Identities=25% Similarity=0.371 Sum_probs=275.6
Q ss_pred eeeeeecCCC-eEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 011711 144 KRTLERTTPK-NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCH 222 (479)
Q Consensus 144 ~~~~~~~~~~-~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~ 222 (479)
...+.+|... ..|+.+.+..+++|+.|+.|++||+.++ +.+..+.+|.+.|.+++|+ +++|++|+.||+|++||+.
T Consensus 111 ~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 111 PKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTG-KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp CEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTC-CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred eEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCC-cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 3456666554 4688888999999999999999999988 7889999999999999997 6799999999999999999
Q ss_pred CCceEEEEec-CCceeEEEeCCCEEEE-EcCCeEEEEEcCCCceE-EecCCCccEEEEEEcCCEEEEEeCCCcEEEEEcc
Q 011711 223 TGQSASVINL-GAEVGSLICEGPWVFV-GMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGI 299 (479)
Q Consensus 223 ~~~~~~~~~~-~~~~~~~~~~~~~l~~-~~~~~i~v~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~ 299 (479)
+++.+..+.. ...+.++.+++..+++ +.|+.|++||+.+++.. .+.+|...|.++.++++.+++|+.||.|++||+.
T Consensus 188 ~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~ 267 (445)
T 2ovr_B 188 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE 267 (445)
T ss_dssp TTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGG
T ss_pred cCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECC
Confidence 9999888874 4557777777776665 58999999999988765 5678999999999988899999999999999998
Q ss_pred CCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCCEEEEEeCCCeEE
Q 011711 300 PNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIK 379 (479)
Q Consensus 300 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~ 379 (479)
++. ....+.+|...|.++.+++.++++++.||.|++||+++++++..+.+|...+.++.+.++++++++.||.|+
T Consensus 268 ~~~-----~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~ 342 (445)
T 2ovr_B 268 TET-----CLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVK 342 (445)
T ss_dssp GTE-----EEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEE
T ss_pred CCc-----EeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEE
Confidence 753 467788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcceEEecc---ccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeee------eccCceEEEEE
Q 011711 380 VWIMTEEGNLEVAYT---HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRI------FSRREVRVIET 450 (479)
Q Consensus 380 iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~------~~~~~v~~l~~ 450 (479)
+||+++++.+..+.. +...+..+.+ +++ ++++++.||.|++||+.+++.+..+ .+.+.|.+++|
T Consensus 343 vwd~~~~~~~~~~~~~~~~~~~v~~~~~------~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 415 (445)
T 2ovr_B 343 IWDIKTGQCLQTLQGPNKHQSAVTCLQF------NKN-FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 415 (445)
T ss_dssp EEETTTCCEEEEECSTTSCSSCEEEEEE------CSS-EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEE
T ss_pred EEECCCCcEEEEEccCCCCCCCEEEEEE------CCC-EEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEe
Confidence 999999888777765 3333333332 244 8999999999999999999988887 34778999999
Q ss_pred CCCc-eEEEEcCCCc----EEEEEeccCC
Q 011711 451 GPDG-LFFTGDGTGM----LSVWKILAKP 474 (479)
Q Consensus 451 s~~g-~l~sg~~dg~----v~vw~~~~~~ 474 (479)
+|++ .+++|+.||. |.+||+...+
T Consensus 416 s~~~~~la~~~~dg~~~~~l~v~df~~~~ 444 (445)
T 2ovr_B 416 SNTKLVCAVGSRNGTEETKLLVLDFDVDM 444 (445)
T ss_dssp CSSEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred cCCEEEEEEcccCCCCccEEEEEECCCCC
Confidence 9999 9999999998 9999998754
No 10
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.2e-39 Score=308.99 Aligned_cols=284 Identities=19% Similarity=0.302 Sum_probs=237.3
Q ss_pred CCCCCCCCCCCCCCCCCc-eeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCe
Q 011711 85 PVSNHKKSPPSYNCPKNN-VRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN 163 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g-~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 163 (479)
.+.||...|++++|+|++ .+|+|||.||++++|++.+...
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~--------------------------------------- 52 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ--------------------------------------- 52 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT---------------------------------------
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc---------------------------------------
Confidence 468999999999999865 8899999999999996432110
Q ss_pred eEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCC
Q 011711 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEG 243 (479)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 243 (479)
..+ .++..+++|...|.+++|+|++++|++++.|++|++||+.+++.+..+
T Consensus 53 ---------------~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~------------- 103 (319)
T 3frx_A 53 ---------------KFG-VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF------------- 103 (319)
T ss_dssp ---------------EEE-EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-------------
T ss_pred ---------------ccc-ccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEE-------------
Confidence 001 356778999999999999999999999999999999999998876544
Q ss_pred CEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEE
Q 011711 244 PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (479)
Q Consensus 244 ~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~ 321 (479)
.+|...|.+++++++ +|++|+.|+.|++||+... ....+.+|...|.+
T Consensus 104 ------------------------~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~------~~~~~~~h~~~v~~ 153 (319)
T 3frx_A 104 ------------------------VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ------CLATLLGHNDWVSQ 153 (319)
T ss_dssp ------------------------ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC------EEEEECCCSSCEEE
T ss_pred ------------------------ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------eEEEEeccCCcEEE
Confidence 368889999999987 8999999999999998643 36678899999999
Q ss_pred EEEc--------CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEE
Q 011711 322 LAVG--------GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEV 391 (479)
Q Consensus 322 l~~~--------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~ 391 (479)
+.+. +..+++++.|+.|++||+++.+....+.+|...|.++.++ +++|++++.||.|++||+.+.+.+..
T Consensus 154 ~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~ 233 (319)
T 3frx_A 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233 (319)
T ss_dssp EEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred EEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 9995 3379999999999999999999999999999999999997 78999999999999999998877766
Q ss_pred eccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee---------ccCceEEEEECCCc-eEEEEcC
Q 011711 392 AYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF---------SRREVRVIETGPDG-LFFTGDG 461 (479)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---------~~~~v~~l~~s~~g-~l~sg~~ 461 (479)
+..+ ..+. ++.++|++. ++++++ ++.+++|+++.......+. +...+.+++|+||| +|++|+.
T Consensus 234 ~~~~-~~v~----~~~~sp~~~-~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~ 306 (319)
T 3frx_A 234 LSAQ-DEVF----SLAFSPNRY-WLAAAT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306 (319)
T ss_dssp EECC-SCEE----EEEECSSSS-EEEEEE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEET
T ss_pred ecCC-CcEE----EEEEcCCCC-EEEEEc-CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeec
Confidence 6543 3333 344579987 677665 4569999998876655443 24568999999999 9999999
Q ss_pred CCcEEEEEeccC
Q 011711 462 TGMLSVWKILAK 473 (479)
Q Consensus 462 dg~v~vw~~~~~ 473 (479)
||.|++|++.+.
T Consensus 307 Dg~i~vWd~~t~ 318 (319)
T 3frx_A 307 DNVIRVWQVMTA 318 (319)
T ss_dssp TSCEEEEEEEEC
T ss_pred CceEEEEEEeec
Confidence 999999999764
No 11
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2e-38 Score=303.29 Aligned_cols=285 Identities=16% Similarity=0.223 Sum_probs=240.1
Q ss_pred CeeeeeecCCCeEEEe--ccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 011711 143 SKRTLERTTPKNVCYH--WLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWD 220 (479)
Q Consensus 143 ~~~~~~~~~~~~~c~~--~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd 220 (479)
....+.+|.....|.. +....+++|+.|++|++||..++ +.+..+..|...|.+++|+|++++|++++.|+.|++||
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT-NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC-CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC-CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 3455666666655554 45568999999999999999988 77888999999999999999999999999999999999
Q ss_pred CCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC-EEEEEeCCCcEEEEEcc
Q 011711 221 CHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGI 299 (479)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~ 299 (479)
+.+++..... ...+.+|.+.|.++.|.++ .+++++.|+.|++||+.
T Consensus 126 ~~~~~~~~~~---------------------------------~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~ 172 (340)
T 1got_B 126 LKTREGNVRV---------------------------------SRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE 172 (340)
T ss_dssp TTTCSBSCEE---------------------------------EEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred CccCCCccee---------------------------------EEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECC
Confidence 9876421110 1234578899999999876 89999999999999998
Q ss_pred CCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCC
Q 011711 300 PNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLD 375 (479)
Q Consensus 300 ~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~d 375 (479)
++. ....+.+|...|.+++|+ +.++++|+.|++|++||+++++++.++.+|...|.++.++ +++|++++.|
T Consensus 173 ~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d 247 (340)
T 1got_B 173 TGQ-----QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247 (340)
T ss_dssp TTE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCc-----EEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCC
Confidence 764 467788999999999997 7899999999999999999999999999999999999997 7899999999
Q ss_pred CeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEECCCc
Q 011711 376 NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDG 454 (479)
Q Consensus 376 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g 454 (479)
|.|++||+++.+.+..+........ ..++.++|+++ ++++|+.|+.|++||+.+++....+. |...|.+++|+|+|
T Consensus 248 ~~v~iwd~~~~~~~~~~~~~~~~~~--v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg 324 (340)
T 1got_B 248 ATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324 (340)
T ss_dssp SCEEEEETTTTEEEEEECCTTCCSC--EEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred CcEEEEECCCCcEEEEEccCCcccc--eEEEEECCCCC-EEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCC
Confidence 9999999998776555433221111 23344579998 89999999999999999988887776 57899999999999
Q ss_pred -eEEEEcCCCcEEEEE
Q 011711 455 -LFFTGDGTGMLSVWK 469 (479)
Q Consensus 455 -~l~sg~~dg~v~vw~ 469 (479)
+|++|+.||.|++||
T Consensus 325 ~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 325 MAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEcCCccEEecC
Confidence 999999999999996
No 12
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1e-37 Score=299.97 Aligned_cols=279 Identities=20% Similarity=0.328 Sum_probs=237.6
Q ss_pred eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC-ceeEE--EeCCCEEEEE-cCCeEEEEE
Q 011711 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA-EVGSL--ICEGPWVFVG-MPNVVKAWH 258 (479)
Q Consensus 183 ~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~-~~~~~--~~~~~~l~~~-~~~~i~v~~ 258 (479)
+....+++|.+.|++++|+|++++|+||+.||+|++||..+++....+..+. .+.++ .+++.+++++ .|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 5678899999999999999999999999999999999999999888777543 33333 3578887766 789999999
Q ss_pred cCCC-------ceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc----
Q 011711 259 IESS-------AEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---- 325 (479)
Q Consensus 259 ~~~~-------~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---- 325 (479)
+... ....+..|...|.++.|+++ .|++++.||+|++||+.++. ....+.+|...|.+++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~ 209 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ-----LLQSFHGHGADVLCLDLAPSET 209 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCEEEEEECCCSS
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-----EEEEEcCCCCCeEEEEEEeCCC
Confidence 8654 23456679999999999987 89999999999999998764 467788999999999984
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEE
Q 011711 326 GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLA 403 (479)
Q Consensus 326 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 403 (479)
+++|++|+.||+|++||+++++++..+.+|...|.++.++ +++|++++.|++|++||++....+..+..+..... .
T Consensus 210 g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~--~ 287 (354)
T 2pbi_B 210 GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG--A 287 (354)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC--E
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccc--e
Confidence 5799999999999999999999999999999999999997 78999999999999999998766555443322111 2
Q ss_pred EeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEECCCc-eEEEEcCCCcEEEEE
Q 011711 404 LGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDG-LFFTGDGTGMLSVWK 469 (479)
Q Consensus 404 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~ 469 (479)
.++.++|++. ++++++.|+.|++||+.+++.+..+. |...|++++|+|+| +|++|+.||.|++|+
T Consensus 288 ~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 288 SSVDFSLSGR-LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eEEEEeCCCC-EEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 2334579998 89999999999999999988877765 58899999999999 999999999999995
No 13
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=6.5e-39 Score=307.13 Aligned_cols=290 Identities=19% Similarity=0.286 Sum_probs=230.8
Q ss_pred CCCCCCCCCCCCCC-----CC-CceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEe
Q 011711 85 PVSNHKKSPPSYNC-----PK-NNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYH 158 (479)
Q Consensus 85 ~~~gh~~~i~~~~~-----s~-~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 158 (479)
.+.||...|++++| ++ +|.+|+||+.||+|+||+...... . +.
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~---~--------~~-------------------- 64 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQ---N--------GY-------------------- 64 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCC---S--------SB--------------------
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCc---c--------cc--------------------
Confidence 56899999999998 66 999999999999999997554321 0 00
Q ss_pred ccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeE
Q 011711 159 WLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS 238 (479)
Q Consensus 159 ~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~ 238 (479)
.+ .+...+.+|...|.+++|+|++.+|++++.|++|++||+.+++.+..+
T Consensus 65 ---------------------~~-~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~-------- 114 (343)
T 2xzm_R 65 ---------------------FG-IPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRF-------- 114 (343)
T ss_dssp ---------------------SE-EEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEE--------
T ss_pred ---------------------cc-cccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEE--------
Confidence 01 345678899999999999999999999999999999999998776544
Q ss_pred EEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCC
Q 011711 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT 316 (479)
Q Consensus 239 ~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~ 316 (479)
.+|...|.+++|+|+ .|++|+.|+.|++||+..... ........|.
T Consensus 115 -----------------------------~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~ 162 (343)
T 2xzm_R 115 -----------------------------VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK---FSSAEKENHS 162 (343)
T ss_dssp -----------------------------ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE---EECCTTTSCS
T ss_pred -----------------------------cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce---eeeecccCCC
Confidence 368889999999987 899999999999999874321 1112234789
Q ss_pred CCeEEEEEc--C----------CEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEE
Q 011711 317 RPVTCLAVG--G----------KRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWI 382 (479)
Q Consensus 317 ~~i~~l~~~--~----------~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd 382 (479)
..|.+++|+ + .++++++.||.|++|| .+.+....+.+|...|.++.++ +++|++++.||.|++||
T Consensus 163 ~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd 241 (343)
T 2xzm_R 163 DWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241 (343)
T ss_dssp SCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred ceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence 999999996 2 6899999999999999 4567788899999999999997 78999999999999999
Q ss_pred cCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceee--ee------------eccCceEEE
Q 011711 383 MTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERG--RI------------FSRREVRVI 448 (479)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~------------~~~~~v~~l 448 (479)
+...........+...+..+ .++|++. +++++ .|+.|++||+.+.+... .+ .+...|.++
T Consensus 242 ~~~~~~~~~~~~~~~~v~~v----~~sp~~~-~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 315 (343)
T 2xzm_R 242 ILNLTYPQREFDAGSTINQI----AFNPKLQ-WVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSL 315 (343)
T ss_dssp SSCCSSCSEEEECSSCEEEE----EECSSSC-EEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEE
T ss_pred CCCCcccceeecCCCcEEEE----EECCCCC-EEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEE
Confidence 95544333333333334333 4468887 66654 58889999998766543 22 235679999
Q ss_pred EECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 449 ETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 449 ~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
+|+|+| +|++|+.||.|++|++.++.
T Consensus 316 ~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 316 AWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp EECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred EECCCCCeEEEecCCceEEEEEEEccC
Confidence 999999 99999999999999998754
No 14
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.9e-39 Score=308.21 Aligned_cols=292 Identities=21% Similarity=0.297 Sum_probs=228.1
Q ss_pred CCCCCCC-CCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCe
Q 011711 85 PVSNHKK-SPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN 163 (479)
Q Consensus 85 ~~~gh~~-~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 163 (479)
.+.+|.. .++.++|+|+|++||+|+.||+|+||+..+... .
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~------------------------------~-------- 51 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW------------------------------I-------- 51 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE------------------------------E--------
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc------------------------------e--------
Confidence 3567877 889999999999999999999999995322100 0
Q ss_pred eEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCC
Q 011711 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEG 243 (479)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 243 (479)
.......+|...|.+++|+|++++|++|+.|++|++||+..+.....
T Consensus 52 -------------------~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~-------------- 98 (345)
T 3fm0_A 52 -------------------CKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECV-------------- 98 (345)
T ss_dssp -------------------EEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEE--------------
T ss_pred -------------------eeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEE--------------
Confidence 01112358999999999999999999999999999999876642211
Q ss_pred CEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEE
Q 011711 244 PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (479)
Q Consensus 244 ~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~ 321 (479)
..+.+|...|.+++|+|+ +|++|+.|+.|++||+..... .+....+.+|...|.+
T Consensus 99 ---------------------~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~h~~~v~~ 155 (345)
T 3fm0_A 99 ---------------------TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE--YECVSVLNSHTQDVKH 155 (345)
T ss_dssp ---------------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC--EEEEEEECCCCSCEEE
T ss_pred ---------------------EEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC--eEEEEEecCcCCCeEE
Confidence 234578999999999987 999999999999999987643 3456778899999999
Q ss_pred EEEc--CCEEEEEeCCCeEEEEECCCCc--EEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcc-------
Q 011711 322 LAVG--GKRLYSGSMDNTIRVWDLDTLE--AVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGN------- 388 (479)
Q Consensus 322 l~~~--~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~------- 388 (479)
++|+ +.+|++|+.|++|++||+++++ +..++.+|...|.+++++ +++|++++.|++|++||......
T Consensus 156 ~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~ 235 (345)
T 3fm0_A 156 VVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS 235 (345)
T ss_dssp EEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceee
Confidence 9997 8899999999999999998875 457889999999999998 78999999999999999743221
Q ss_pred --------eEEecc-ccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCcee--------eee--eccCceEEEE
Q 011711 389 --------LEVAYT-HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMER--------GRI--FSRREVRVIE 449 (479)
Q Consensus 389 --------~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--------~~~--~~~~~v~~l~ 449 (479)
+..+.. |...+ ..+.++|++. .+++++.|+.|++|+....... ... .|...|.+++
T Consensus 236 ~~~~~~~~~~~~~~~h~~~v----~~v~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 310 (345)
T 3fm0_A 236 GSDPSWKCICTLSGFHSRTI----YDIAWCQLTG-ALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVA 310 (345)
T ss_dssp ---CEEEEEEEECSSCSSCE----EEEEECTTTC-CEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEE
T ss_pred ccCCccceeEEecCCCCCcE----EEEEEecCCC-EEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeE
Confidence 111111 33333 3344568887 7889999999999998764311 111 2578899999
Q ss_pred ECCCc--eEEEEcCCCcEEEEEeccCCC
Q 011711 450 TGPDG--LFFTGDGTGMLSVWKILAKPN 475 (479)
Q Consensus 450 ~s~~g--~l~sg~~dg~v~vw~~~~~~~ 475 (479)
|+|++ +|++|+.||.|++|++..++.
T Consensus 311 ~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 311 WNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp ECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred EeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 99986 899999999999999987654
No 15
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.2e-38 Score=328.91 Aligned_cols=377 Identities=13% Similarity=0.136 Sum_probs=284.5
Q ss_pred CCCCCCCC-CCCCCCCC--CceeccCCCCCCccccccccCC--------CC--CC--CCCCccccccCcC----------
Q 011711 85 PVSNHKKS-PPSYNCPK--NNVRVSSGSEEGTTHVQNRENP--------DR--TV--PNKSSLDCSTGSD---------- 139 (479)
Q Consensus 85 ~~~gh~~~-i~~~~~s~--~g~~las~~~dg~i~iw~~~~~--------~~--~~--~~~~~~~~~~~~~---------- 139 (479)
.+.+|... |.+++|+| +|++||+|+.||+++||+..+. .. .. .......+....+
T Consensus 58 ~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 137 (615)
T 1pgu_A 58 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 137 (615)
T ss_dssp EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred EEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccC
Confidence 46889999 99999999 9999999999999999998532 00 00 0000000000000
Q ss_pred -----------CCCCeeeeeecCCCeEEEec--cCC-eeEeCCCCCeEEEeecCCCceeeEEEecccc---cEEEEEeCC
Q 011711 140 -----------DSGSKRTLERTTPKNVCYHW--LSG-NCVKGDECRFWHSWFCGEGFTMLAKLEGHKK---AVSGIALPL 202 (479)
Q Consensus 140 -----------~~~~~~~~~~~~~~~~c~~~--~~~-~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~---~V~~l~~s~ 202 (479)
.......+..+.....|..+ ... .+++++.|+.|++||..++ +.+..+.+|.. .|++++|+|
T Consensus 138 ~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~ 216 (615)
T 1pgu_A 138 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-KFSASDRTHHKQGSFVRDVEFSP 216 (615)
T ss_dssp SSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-EEEEEECSSSCTTCCEEEEEECS
T ss_pred CCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-ceeeeecccCCCCceEEEEEECC
Confidence 01122333344444444444 443 6999999999999999888 88899999999 999999999
Q ss_pred C-CCEEEEEeCCCcEEEEECCCCceEEEE-----ecCCceeEEEe-CCCEEEEE-cCCeEEEEEcCCCceEE-ecCC---
Q 011711 203 R-SDKLYSGSRDGTVQLWDCHTGQSASVI-----NLGAEVGSLIC-EGPWVFVG-MPNVVKAWHIESSAEFS-LDGP--- 270 (479)
Q Consensus 203 ~-~~~l~s~s~Dg~v~vwd~~~~~~~~~~-----~~~~~~~~~~~-~~~~l~~~-~~~~i~v~~~~~~~~~~-~~~~--- 270 (479)
+ +++|++++.||.|++||+.+++.+..+ .+...+.++.+ ++.+++++ .++.|++||+.+++... +..+
T Consensus 217 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 296 (615)
T 1pgu_A 217 DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 296 (615)
T ss_dssp TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCc
Confidence 9 999999999999999999999999988 55666777666 67766655 78999999999887653 3333
Q ss_pred -CccEEEEEEc-CCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCC--------------------------------
Q 011711 271 -VGEVYSMVVA-NEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT-------------------------------- 316 (479)
Q Consensus 271 -~~~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~-------------------------------- 316 (479)
...+.++.+. .+.+++++.||.|++||+.++. ....+.+|.
T Consensus 297 ~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~-----~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~ 371 (615)
T 1pgu_A 297 LGNQQVGVVATGNGRIISLSLDGTLNFYELGHDE-----VLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDH 371 (615)
T ss_dssp GGGCEEEEEEEETTEEEEEETTSCEEEEETTEEE-----EEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCC
T ss_pred ccCceeEEEeCCCCeEEEEECCCCEEEEECCCCc-----EEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcc
Confidence 3677788775 4499999999999999987642 234444444
Q ss_pred -CCeEEEEEc-CCEEEEEeCCCeEEEEECC----------------------------------CCcEEEEEeCCCCCcE
Q 011711 317 -RPVTCLAVG-GKRLYSGSMDNTIRVWDLD----------------------------------TLEAVMTLNGHTDAPM 360 (479)
Q Consensus 317 -~~i~~l~~~-~~~l~sgs~dg~I~iwd~~----------------------------------~~~~~~~~~~h~~~v~ 360 (479)
..|.++++. ++.+++++.|+.|++||+. +++.+..+. |...+.
T Consensus 372 ~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 450 (615)
T 1pgu_A 372 SNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGS 450 (615)
T ss_dssp CSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEE
T ss_pred cCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCce
Confidence 455555554 6677777777777777664 344444444 667788
Q ss_pred EEEEcCCEEEEEeC-CCeEEEEEcCCCcce-EEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeee
Q 011711 361 SLLCWDQYLLSCSL-DNTIKVWIMTEEGNL-EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGR 438 (479)
Q Consensus 361 ~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 438 (479)
++.+.++++++++. |+.|++||+.+.... ..+..+...+..+.+ +|+++ +|++++.|+.|++||+.+++.+..
T Consensus 451 ~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~----s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~ 525 (615)
T 1pgu_A 451 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISI----SPSET-YIAAGDVMGKILLYDLQSREVKTS 525 (615)
T ss_dssp EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEE----CTTSS-EEEEEETTSCEEEEETTTTEEEEC
T ss_pred EEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEE----CCCCC-EEEEcCCCCeEEEeeCCCCcceeE
Confidence 88888999999999 999999999876443 333445555544444 69998 899999999999999999999888
Q ss_pred ee--ccCceEEEEECC----------Cc-eEEEEcCCCcEEEEEeccC
Q 011711 439 IF--SRREVRVIETGP----------DG-LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 439 ~~--~~~~v~~l~~s~----------~g-~l~sg~~dg~v~vw~~~~~ 473 (479)
+. |...|++++|+| ++ +|++++.||.|++|++.+.
T Consensus 526 ~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 526 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred eecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 76 788999999999 89 9999999999999999875
No 16
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.8e-39 Score=311.38 Aligned_cols=296 Identities=22% Similarity=0.300 Sum_probs=244.2
Q ss_pred eEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCc-ee--EEEeCCCEEEE
Q 011711 172 FWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE-VG--SLICEGPWVFV 248 (479)
Q Consensus 172 ~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~ 248 (479)
.+..|+..+. ...+.+++|.+.|++++|+|++++|+||+.|++|+|||+.+++....+..+.. +. ++.++++++++
T Consensus 47 ~~~~~~~~~~-~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las 125 (380)
T 3iz6_a 47 TAVSFNPTDL-VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVAC 125 (380)
T ss_dssp GCCCCCCCCC-EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEE
T ss_pred ccccccccee-EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEE
Confidence 3445666555 77889999999999999999999999999999999999999999888875543 33 34457888877
Q ss_pred E-cCCeEEEEEcCCCc--------eEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeee----
Q 011711 249 G-MPNVVKAWHIESSA--------EFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALL---- 312 (479)
Q Consensus 249 ~-~~~~i~v~~~~~~~--------~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~---- 312 (479)
+ .|+.+++|++.+.. ...+.+|.+.+.++.|.++ .|++|+.|+.|++||+.++.. ...+
T Consensus 126 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~-----~~~~~~~~ 200 (380)
T 3iz6_a 126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR-----ISIFGSEF 200 (380)
T ss_dssp CCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE-----EEEECCCS
T ss_pred eeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE-----EEEeeccc
Confidence 5 78999999997543 1246789999999999875 799999999999999988753 2222
Q ss_pred -cCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECC-CCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCC
Q 011711 313 -KGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLD-TLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTE 385 (479)
Q Consensus 313 -~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~-~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~ 385 (479)
.+|...|.+++++ +++|++|+.|++|++||++ ..+.+..+.+|...|.++.+. +++|++++.|++|++||+++
T Consensus 201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~ 280 (380)
T 3iz6_a 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280 (380)
T ss_dssp SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT
T ss_pred CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC
Confidence 6799999999994 7899999999999999998 567889999999999999997 68999999999999999999
Q ss_pred CcceEEeccccCc---cceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeee-----eccCceEEEEECCCc-eE
Q 011711 386 EGNLEVAYTHNED---HGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRI-----FSRREVRVIETGPDG-LF 456 (479)
Q Consensus 386 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-----~~~~~v~~l~~s~~g-~l 456 (479)
+..+..+..+... ......++.++|+|+ ++++|+.||.|++||+.+++....+ .|.+.|.+++|+|+| +|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 359 (380)
T 3iz6_a 281 GHQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSAL 359 (380)
T ss_dssp TEEEEEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEE
T ss_pred CcEEEEecccccccccccCceEEEEECCCCC-EEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEE
Confidence 8877666543221 001112233469998 8999999999999999988877665 357889999999999 99
Q ss_pred EEEcCCCcEEEEEeccCC
Q 011711 457 FTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 457 ~sg~~dg~v~vw~~~~~~ 474 (479)
++|+.||.|++|++....
T Consensus 360 ~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 360 CTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEECTTSCEEEEECCSSS
T ss_pred EEeeCCCCEEEEecCCCc
Confidence 999999999999998653
No 17
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.8e-39 Score=303.34 Aligned_cols=283 Identities=20% Similarity=0.235 Sum_probs=232.4
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecC--CCeEEEeccCC
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTT--PKNVCYHWLSG 162 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~c~~~~~~ 162 (479)
+|.+|.+.|.+++|+|+|.+|++|+.||+++|||..+... ...+..+. ...+++.+...
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~-------------------~~~~~~~~~~v~~~~~~~~~~ 68 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE-------------------VRSIQVTETPVRAGKFIARKN 68 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-------------------EEEEECCSSCEEEEEEEGGGT
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce-------------------eEEeeccCCcEEEEEEeCCCC
Confidence 5788999999999999999999999999999998654321 11122222 23556777788
Q ss_pred eeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeC
Q 011711 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICE 242 (479)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 242 (479)
.+++|+.|+.|++||+.++ +.+..+++|.+.|.+++|+|++++|++|+.|++|++||+.++....
T Consensus 69 ~l~s~s~d~~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~-------------- 133 (304)
T 2ynn_A 69 WIIVGSDDFRIRVFNYNTG-EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE-------------- 133 (304)
T ss_dssp EEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEE--------------
T ss_pred EEEEECCCCEEEEEECCCC-cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchh--------------
Confidence 9999999999999999998 7889999999999999999999999999999999999998764332
Q ss_pred CCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCe
Q 011711 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPV 319 (479)
Q Consensus 243 ~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i 319 (479)
..+.+|...|.+++|+|+ .|++|+.||.|++||+..... ......+|...+
T Consensus 134 ----------------------~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~----~~~~~~~~~~~v 187 (304)
T 2ynn_A 134 ----------------------QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP----NFTLTTGQERGV 187 (304)
T ss_dssp ----------------------EEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC----SEEEECCCTTCE
T ss_pred ----------------------hhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc----cceeccCCcCcE
Confidence 123568899999999873 899999999999999977543 233345677889
Q ss_pred EEEEEc----CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEec
Q 011711 320 TCLAVG----GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAY 393 (479)
Q Consensus 320 ~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 393 (479)
..+.+. +.+|++|+.|++|++||+++++++.++.+|...|.++.++ +++|++++.||+|++||+.+.+....+.
T Consensus 188 ~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~ 267 (304)
T 2ynn_A 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267 (304)
T ss_dssp EEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeecc
Confidence 999884 6799999999999999999999999999999999999988 6799999999999999999988888877
Q ss_pred cccCccceEEEeeeeCCCCCc-EEEEEeCCCeEEEeecCC
Q 011711 394 THNEDHGVLALGGLNDPDGNP-VLICSCNDDSVHLYELPS 432 (479)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~ 432 (479)
.+...+..+++ +|++.. ++++|+ +..+.+|++..
T Consensus 268 ~~~~~~~~~~~----~~~~~~~~~asg~-~~g~~~~~~~~ 302 (304)
T 2ynn_A 268 VGLERSWCIAT----HPTGRKNYIASGF-DNGFTVLSLGN 302 (304)
T ss_dssp CSSSSEEEEEE----CTTCGGGCEEEEE-TTEEEEEECC-
T ss_pred CCCccEEEEEE----CCCCCceEEEEec-CCceEEEEecc
Confidence 77666555444 477654 577776 45577777754
No 18
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.5e-37 Score=292.43 Aligned_cols=282 Identities=18% Similarity=0.307 Sum_probs=238.9
Q ss_pred eeeeeecCCC--eEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 011711 144 KRTLERTTPK--NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDC 221 (479)
Q Consensus 144 ~~~~~~~~~~--~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~ 221 (479)
++++.+|... .+++++.+..+++|+.|+.|++||+.++ +.+..+.+|..+|.+++|+|++++|++|+.|++|++||+
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ-VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 4556666555 4456667779999999999999999988 788999999999999999999999999999999999999
Q ss_pred CCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEcc
Q 011711 222 HTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGI 299 (479)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~ 299 (479)
.+++.+..+ .+|...|.+++++|+ +|++|+.||.|++||+.
T Consensus 85 ~~~~~~~~~-------------------------------------~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~ 127 (304)
T 2ynn_A 85 NTGEKVVDF-------------------------------------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127 (304)
T ss_dssp TTCCEEEEE-------------------------------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGG
T ss_pred CCCcEEEEE-------------------------------------eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECC
Confidence 998876554 368889999999988 89999999999999998
Q ss_pred CCCCCcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEe-CCCCCcEEEEEc----CCEEEE
Q 011711 300 PNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLN-GHTDAPMSLLCW----DQYLLS 371 (479)
Q Consensus 300 ~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~v~~~~~~----~~~l~s 371 (479)
++. .+...+.+|...|.+++|+ +..|++|+.|++|++||+++.+....+. .|...+..+.+. +.+|++
T Consensus 128 ~~~----~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 203 (304)
T 2ynn_A 128 NNW----ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203 (304)
T ss_dssp GTT----EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEE
T ss_pred CCc----chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEE
Confidence 763 3456788999999999996 5789999999999999999887766665 455677777775 469999
Q ss_pred EeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec-cCceEEEEE
Q 011711 372 CSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS-RREVRVIET 450 (479)
Q Consensus 372 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~l~~ 450 (479)
++.|++|++||+++++.+..+..|...+..+.+ +|+++ +|++++.|++|++||+.+++....+.. ...+.++++
T Consensus 204 ~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~----~p~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~ 278 (304)
T 2ynn_A 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF----HPTLP-IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIAT 278 (304)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEE----CSSSS-EEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEE
T ss_pred EcCCCeEEEEeCCCCccceeeCCCCCCEEEEEE----CCCCC-EEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEE
Confidence 999999999999999888888888877665555 58888 899999999999999999998888764 678999999
Q ss_pred CCCc---eEEEEcCCCcEEEEEeccC
Q 011711 451 GPDG---LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 451 s~~g---~l~sg~~dg~v~vw~~~~~ 473 (479)
+|++ ++++|+.|| +.+|++.++
T Consensus 279 ~~~~~~~~~asg~~~g-~~~~~~~~~ 303 (304)
T 2ynn_A 279 HPTGRKNYIASGFDNG-FTVLSLGND 303 (304)
T ss_dssp CTTCGGGCEEEEETTE-EEEEECC--
T ss_pred CCCCCceEEEEecCCc-eEEEEeccC
Confidence 9987 466666555 778888654
No 19
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-39 Score=315.57 Aligned_cols=347 Identities=17% Similarity=0.189 Sum_probs=265.2
Q ss_pred CCCCCCCCCCCCCCce-eccCCCCCCccccccc----cCCCCCCCCCCccccccCcCCCCCeeeeeecC--CCeEEEecc
Q 011711 88 NHKKSPPSYNCPKNNV-RVSSGSEEGTTHVQNR----ENPDRTVPNKSSLDCSTGSDDSGSKRTLERTT--PKNVCYHWL 160 (479)
Q Consensus 88 gh~~~i~~~~~s~~g~-~las~~~dg~i~iw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~c~~~~ 160 (479)
.|..+|.+++|+|+|. ++|+|+.||.+++|++ .++............ .... .......++. ...+++.+.
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~v~~~~~s~~ 119 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAEL-RHPF--ALSASSGKTTNQVTCLAWSHD 119 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEE-ECCC--CCC------CBCEEEEEECTT
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccc-cccc--cccccccCCCCceEEEEEcCC
Confidence 3568899999999999 9999999999999998 544310000000000 0000 0000011122 234556666
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEE
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI 240 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 240 (479)
...+++|+.|+.|++|+ .++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..........
T Consensus 120 ~~~l~~~~~dg~i~i~~-~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 197 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWN-KTG-ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI 197 (425)
T ss_dssp SSEEEEEETTSCEEEEE-TTS-CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred CCEEEEEeCCCeEEEEe-CCC-CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence 77899999999999999 444 6788999999999999999999999999999999999999998887765433211000
Q ss_pred eCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCe
Q 011711 241 CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPV 319 (479)
Q Consensus 241 ~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i 319 (479)
. ..........+.++.+.++ .+++++.||.|++||+.+.. ....+..|...|
T Consensus 198 ~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~-----~~~~~~~~~~~i 250 (425)
T 1r5m_A 198 N----------------------AENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT-----PTGKLIGHHGPI 250 (425)
T ss_dssp ------------------------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSS-----CSEEECCCSSCE
T ss_pred e----------------------eccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCc-----eeeeeccCCCce
Confidence 0 0011122233677777777 99999999999999998764 356678999999
Q ss_pred EEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcC-CEEEEEeCCCeEEEEEcCCCcceEEecccc
Q 011711 320 TCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD-QYLLSCSLDNTIKVWIMTEEGNLEVAYTHN 396 (479)
Q Consensus 320 ~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 396 (479)
.+++|+ +++|++++.|+.|++||+++++.+..+..|...+.++.+.+ .++++++.|+.|++||+++...+..+..+.
T Consensus 251 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 330 (425)
T 1r5m_A 251 SVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDG 330 (425)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTT
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCC
Confidence 999996 88999999999999999999999999999999999999983 399999999999999999988887777777
Q ss_pred CccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCc--------------------eeeeeecc--C-ceEEEEECCC
Q 011711 397 EDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFM--------------------ERGRIFSR--R-EVRVIETGPD 453 (479)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--------------------~~~~~~~~--~-~v~~l~~s~~ 453 (479)
..+..+.+ +|+++ +|++++.|+.|++||+.+++ .+..+... . .|.+++|+|+
T Consensus 331 ~~i~~~~~----s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 405 (425)
T 1r5m_A 331 VPIFAGRI----SQDGQ-KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCA 405 (425)
T ss_dssp CCEEEEEE----CTTSS-EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTT
T ss_pred ccEEEEEE----cCCCC-EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCC
Confidence 66655555 58888 88999999999999998877 66666543 3 9999999999
Q ss_pred c-eEEEEcCCCcEEEEEec
Q 011711 454 G-LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 454 g-~l~sg~~dg~v~vw~~~ 471 (479)
+ +|++++.||.|++|++.
T Consensus 406 ~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 406 GNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp SSEEEEEESSSCCEEEECC
T ss_pred CceEEEEecCceEEEEeec
Confidence 9 99999999999999985
No 20
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=9.3e-39 Score=329.80 Aligned_cols=360 Identities=11% Similarity=0.149 Sum_probs=279.9
Q ss_pred CCCCCCCCCCCCCCCCCce-eccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCC-----CeEEEe
Q 011711 85 PVSNHKKSPPSYNCPKNNV-RVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP-----KNVCYH 158 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~-~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~c~~ 158 (479)
.+.+|...|.+++|+|+|. .+++++.||++++|+..+... ...+..+.. ..+++.
T Consensus 155 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~-------------------~~~~~~~~~~~~~v~~~~~~ 215 (615)
T 1pgu_A 155 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF-------------------SASDRTHHKQGSFVRDVEFS 215 (615)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE-------------------EEEECSSSCTTCCEEEEEEC
T ss_pred eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce-------------------eeeecccCCCCceEEEEEEC
Confidence 4578999999999999998 799999999999998544221 111222222 245566
Q ss_pred cc-CCeeEeCCCCCeEEEeecCCCceeeEEE-e---cccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 011711 159 WL-SGNCVKGDECRFWHSWFCGEGFTMLAKL-E---GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG 233 (479)
Q Consensus 159 ~~-~~~~~~g~~d~~i~vw~~~~~~~~~~~~-~---~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~ 233 (479)
+. ...+++++.|+.|++||+.++ +.+..+ . +|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+...
T Consensus 216 ~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 216 PDSGEFVITVGSDRKISCFDGKSG-EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp STTCCEEEEEETTCCEEEEETTTC-CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCC-CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 66 678999999999999999988 777888 6 899999999999 9999999999999999999999999888866
Q ss_pred -----CceeEEE-eCCCEEEE-EcCCeEEEEEcCCCceE-EecCCCccEEEEEEcCC-----------------------
Q 011711 234 -----AEVGSLI-CEGPWVFV-GMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANE----------------------- 282 (479)
Q Consensus 234 -----~~~~~~~-~~~~~l~~-~~~~~i~v~~~~~~~~~-~~~~~~~~v~~~~~~~~----------------------- 282 (479)
..+..+. +++.++++ +.++.|++||+.+++.. .+.+|...|.++++ ++
T Consensus 294 ~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~ 372 (615)
T 1pgu_A 294 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHS 372 (615)
T ss_dssp TTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCC
T ss_pred CCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCccc
Confidence 2333333 36665555 58899999999876553 44455555555555 43
Q ss_pred ------------EEEEEeCCCcEEEEEccCCCCC-----------------------------cccceeeecCCCCCeEE
Q 011711 283 ------------MLFAGAQDGNILVWKGIPNTQN-----------------------------PFQLAALLKGHTRPVTC 321 (479)
Q Consensus 283 ------------~l~~g~~dg~i~iwd~~~~~~~-----------------------------~~~~~~~~~~h~~~i~~ 321 (479)
.+++++.|+.|++||+...... ..+....+ .|...+.+
T Consensus 373 ~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 451 (615)
T 1pgu_A 373 NLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV-RLNSPGSA 451 (615)
T ss_dssp SCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEE
T ss_pred CceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeec-ccCCCceE
Confidence 5555666666666655432100 01112222 26788999
Q ss_pred EEEcCCEEEEEeC-CCeEEEEECCCCcEE-EEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEecc-cc
Q 011711 322 LAVGGKRLYSGSM-DNTIRVWDLDTLEAV-MTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYT-HN 396 (479)
Q Consensus 322 l~~~~~~l~sgs~-dg~I~iwd~~~~~~~-~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~ 396 (479)
++++++++++++. |+.|++||+.+++.. ..+..|...|.++.++ +++|++++.||.|++||+.+.+.+..+.. |.
T Consensus 452 ~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~ 531 (615)
T 1pgu_A 452 VSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRT 531 (615)
T ss_dssp EEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCS
T ss_pred EEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCC
Confidence 9999999999999 999999999988776 6778899999999996 78999999999999999999887776666 66
Q ss_pred CccceEEEeeeeCC----------CCCcEEEEEeCCCeEEEeecCCC-ceeeeee-ccCceEEEEECCCceEEEEcCCCc
Q 011711 397 EDHGVLALGGLNDP----------DGNPVLICSCNDDSVHLYELPSF-MERGRIF-SRREVRVIETGPDGLFFTGDGTGM 464 (479)
Q Consensus 397 ~~~~~~~~~~~~~~----------~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~-~~~~v~~l~~s~~g~l~sg~~dg~ 464 (479)
..+..+.+ +| +++ +|++++.|+.|++||+.++ +.+..+. |...|.+++|+|++.|++++.||.
T Consensus 532 ~~v~~~~~----sp~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~l~s~~~d~~ 606 (615)
T 1pgu_A 532 SKINAISW----KPAEKGANEEEIEED-LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADAC 606 (615)
T ss_dssp SCEEEEEE----CCCC------CCSCC-EEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSC
T ss_pred CceeEEEE----cCccccccccccCCC-EEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCCeEEecCCce
Confidence 66665555 58 787 8999999999999999987 5555554 578899999999998999999999
Q ss_pred EEEEEecc
Q 011711 465 LSVWKILA 472 (479)
Q Consensus 465 v~vw~~~~ 472 (479)
|++|+++.
T Consensus 607 v~iw~~~~ 614 (615)
T 1pgu_A 607 IKRWNVVL 614 (615)
T ss_dssp EEEEEEC-
T ss_pred EEEEeeec
Confidence 99999975
No 21
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.3e-39 Score=356.10 Aligned_cols=365 Identities=20% Similarity=0.301 Sum_probs=289.6
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccC---
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS--- 161 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~--- 161 (479)
.+.+|...|.+++|+|+|.++|+|+.||+++|||..+.. ....+..+.....|..+..
T Consensus 652 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-------------------~~~~~~~~~~~v~~~~~~~~~~ 712 (1249)
T 3sfz_A 652 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK-------------------LVHTYDEHSEQVNCCHFTNKSN 712 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-------------------EEEEEECCSSCEEEEEECSSSS
T ss_pred EeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc-------------------eEEEEcCCCCcEEEEEEecCCC
Confidence 457899999999999999999999999999999866432 1223344444555555533
Q ss_pred -CeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-------
Q 011711 162 -GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG------- 233 (479)
Q Consensus 162 -~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~------- 233 (479)
..+++|+.|+.|++||+.++ +.+..+.+|.+.|++++|+|++++|++++.||+|++||+.+++....+...
T Consensus 713 ~~~l~sg~~d~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 791 (1249)
T 3sfz_A 713 HLLLATGSNDFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSE 791 (1249)
T ss_dssp CCEEEEEETTSCEEEEETTSS-SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC----
T ss_pred ceEEEEEeCCCeEEEEECCCc-chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccC
Confidence 36889999999999999988 788999999999999999999999999999999999999888766554321
Q ss_pred -------------------------------------------------CceeEE--EeCCCEEEEE-cCCeEEEEEcCC
Q 011711 234 -------------------------------------------------AEVGSL--ICEGPWVFVG-MPNVVKAWHIES 261 (479)
Q Consensus 234 -------------------------------------------------~~~~~~--~~~~~~l~~~-~~~~i~v~~~~~ 261 (479)
..+.++ .+++.+++++ .++.|++|++.+
T Consensus 792 ~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~ 871 (1249)
T 3sfz_A 792 DPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS 871 (1249)
T ss_dssp ----CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTT
T ss_pred CccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Confidence 111122 2355666554 678889999888
Q ss_pred CceE-EecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCC-----------------------------------
Q 011711 262 SAEF-SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQ----------------------------------- 303 (479)
Q Consensus 262 ~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~----------------------------------- 303 (479)
+... ...+|...|.+++|+++ .+++++.||.|++||+.....
T Consensus 872 ~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 951 (1249)
T 3sfz_A 872 RLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAG 951 (1249)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEE
T ss_pred CceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEec
Confidence 7654 46789999999999987 899999999999999643100
Q ss_pred ---------------------------------------CcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEE
Q 011711 304 ---------------------------------------NPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWD 342 (479)
Q Consensus 304 ---------------------------------------~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd 342 (479)
...+....+.+|...|.+++|+ ++++++++.||.|++||
T Consensus 952 ~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 952 KTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp SSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEE
T ss_pred CcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 0012234455678888888886 77888888888888888
Q ss_pred CCCCcEEEEEeCCCCCcEEEEEc-CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeC
Q 011711 343 LDTLEAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCN 421 (479)
Q Consensus 343 ~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 421 (479)
+.+++.. .+..|...+.++.+. +..+++++.||.|++||+.+++....+..|...+..+.+ +|+++ ++++++.
T Consensus 1032 ~~~~~~~-~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~----s~d~~-~l~s~s~ 1105 (1249)
T 3sfz_A 1032 WQTGDYV-FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAI----SSDAT-KFSSTSA 1105 (1249)
T ss_dssp TTTTEEE-CCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEE----CSSSS-SCEEECC
T ss_pred CCCCceE-EEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEE----CCCCC-EEEEEcC
Confidence 8887765 345778888888887 567888888888999998888888888878877777666 59988 7888999
Q ss_pred CCeEEEeecCCCceeeeee-ccCceEEEEECCCc-eEEEEcCCCcEEEEEeccCCC
Q 011711 422 DDSVHLYELPSFMERGRIF-SRREVRVIETGPDG-LFFTGDGTGMLSVWKILAKPN 475 (479)
Q Consensus 422 dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~~ 475 (479)
|+.|++||+.+++....+. |...|++++|+|+| +|++|+.||.|++||+.+++.
T Consensus 1106 d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~ 1161 (1249)
T 3sfz_A 1106 DKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL 1161 (1249)
T ss_dssp SSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCC
T ss_pred CCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCce
Confidence 9999999999998877776 47889999999999 999999999999999987653
No 22
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.2e-38 Score=299.74 Aligned_cols=287 Identities=20% Similarity=0.323 Sum_probs=235.0
Q ss_pred CCCCCCCCCCCCCCCCC-ceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCe
Q 011711 85 PVSNHKKSPPSYNCPKN-NVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN 163 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~-g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 163 (479)
+|+||++.|++++|+|+ +++|||||.||+|+||++..... .
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~---~----------------------------------- 74 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET---N----------------------------------- 74 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS---C-----------------------------------
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc---c-----------------------------------
Confidence 57899999999999997 68999999999999997554321 0
Q ss_pred eEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCC
Q 011711 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEG 243 (479)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 243 (479)
.+ .+...+++|...|.+++|+|++++|++++.|+.|++|+...........
T Consensus 75 ----------------~~-~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~------------ 125 (340)
T 4aow_A 75 ----------------YG-IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV------------ 125 (340)
T ss_dssp ----------------SE-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE------------
T ss_pred ----------------cc-eeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeec------------
Confidence 00 3456788999999999999999999999999999999998876654443
Q ss_pred CEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEE
Q 011711 244 PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (479)
Q Consensus 244 ~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~ 321 (479)
.+...+..+.+.++ .|++|+.|+.+++||+.... .......+|...+.+
T Consensus 126 -------------------------~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~----~~~~~~~~~~~~v~~ 176 (340)
T 4aow_A 126 -------------------------GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC----KYTVQDESHSEWVSC 176 (340)
T ss_dssp -------------------------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE----EEEECSSSCSSCEEE
T ss_pred -------------------------CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc----eEEEEeccccCcccc
Confidence 34455666666655 89999999999999987653 345556789999999
Q ss_pred EEEc----CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccc
Q 011711 322 LAVG----GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTH 395 (479)
Q Consensus 322 l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 395 (479)
++++ ..++++++.|+.|++||+++++++..+.+|...|.++.++ +++|++++.|+.|++||+++...+..+..+
T Consensus 177 ~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~ 256 (340)
T 4aow_A 177 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256 (340)
T ss_dssp EEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS
T ss_pred eEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC
Confidence 9995 4678999999999999999999999999999999999987 789999999999999999988777665543
Q ss_pred cCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee----------ccCceEEEEECCCc-eEEEEcCCCc
Q 011711 396 NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF----------SRREVRVIETGPDG-LFFTGDGTGM 464 (479)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~----------~~~~v~~l~~s~~g-~l~sg~~dg~ 464 (479)
..+..+ .++|++. +++++.|+.|++||++++.....+. +...|++++|+|+| +|++|+.||.
T Consensus 257 -~~v~~~----~~~~~~~--~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~ 329 (340)
T 4aow_A 257 -DIINAL----CFSPNRY--WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL 329 (340)
T ss_dssp -SCEEEE----EECSSSS--EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSC
T ss_pred -ceEEee----ecCCCCc--eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 333333 3357765 4556679999999999887665543 36789999999999 9999999999
Q ss_pred EEEEEeccCC
Q 011711 465 LSVWKILAKP 474 (479)
Q Consensus 465 v~vw~~~~~~ 474 (479)
|+|||+.++.
T Consensus 330 v~iW~~~tGt 339 (340)
T 4aow_A 330 VRVWQVTIGT 339 (340)
T ss_dssp EEEEEEEC--
T ss_pred EEEEeCCCcC
Confidence 9999999864
No 23
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=9.5e-38 Score=294.84 Aligned_cols=283 Identities=20% Similarity=0.344 Sum_probs=235.7
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCee
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 164 (479)
.+.||...|.+++|+|+|+++++|+.||+++||+.
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~--------------------------------------------- 52 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA--------------------------------------------- 52 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET---------------------------------------------
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeC---------------------------------------------
Confidence 45788888888888888888888888887777742
Q ss_pred EeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCC
Q 011711 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP 244 (479)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (479)
.++ +....+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+
T Consensus 53 --------------~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-------------- 103 (312)
T 4ery_A 53 --------------YDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-------------- 103 (312)
T ss_dssp --------------TTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--------------
T ss_pred --------------CCc-ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEE--------------
Confidence 222 345567889999999999999999999999999999999988776544
Q ss_pred EEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEE
Q 011711 245 WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCL 322 (479)
Q Consensus 245 ~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l 322 (479)
.+|...|.++.|+++ +|++|+.||.|++||+.++. ....+..|..+|.++
T Consensus 104 -----------------------~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~~ 155 (312)
T 4ery_A 104 -----------------------KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----CLKTLPAHSDPVSAV 155 (312)
T ss_dssp -----------------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEE
T ss_pred -----------------------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-----EEEEecCCCCcEEEE
Confidence 357888999999987 99999999999999998764 367788999999999
Q ss_pred EEc--CCEEEEEeCCCeEEEEECCCCcEEEEEe-CCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccC
Q 011711 323 AVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLN-GHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNE 397 (479)
Q Consensus 323 ~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 397 (479)
+|+ ++++++++.||.|++||+++++.+..+. .+...+..+.++ +++|++++.|+.|++||+++.+.+..+..+..
T Consensus 156 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 235 (312)
T 4ery_A 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235 (312)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCC
T ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCC
Confidence 996 8899999999999999999999888875 455567778877 78999999999999999999888777777665
Q ss_pred ccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEECCCc-eEEEEc--CCCcEEEEEec
Q 011711 398 DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDG-LFFTGD--GTGMLSVWKIL 471 (479)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sg~--~dg~v~vw~~~ 471 (479)
....+.... ..+++. ++++++.|+.|++||+.+++.+..+. |...|.+++|+|++ .|++++ .||.|++|+.+
T Consensus 236 ~~~~~~~~~-~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 236 EKYCIFANF-SVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSSCCCEEE-ECSSSC-EEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ceEEEEEEE-EeCCCc-EEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 443332211 124455 89999999999999999999888776 57889999999999 888876 69999999964
No 24
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.4e-38 Score=301.75 Aligned_cols=279 Identities=19% Similarity=0.260 Sum_probs=235.6
Q ss_pred CCCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCC--CeEEEeccC
Q 011711 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP--KNVCYHWLS 161 (479)
Q Consensus 84 ~~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~~ 161 (479)
..+.||...|++++|+|+|++|++|+.||+++||+..+... ...+..+.. ..+++.+.+
T Consensus 49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~-------------------~~~~~~~~~~v~~~~~s~~~ 109 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-------------------VHAIPLRSSWVMTCAYAPSG 109 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-------------------EEEEECSSSCEEEEEECTTS
T ss_pred eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc-------------------ceEeecCCccEEEEEECCCC
Confidence 35789999999999999999999999999999998654321 111122222 345667777
Q ss_pred CeeEeCCCCCeEEEeecCCC---ceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeE
Q 011711 162 GNCVKGDECRFWHSWFCGEG---FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS 238 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~---~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~ 238 (479)
..+++|+.|+.+++|++.+. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+
T Consensus 110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~-------- 180 (340)
T 1got_B 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTF-------- 180 (340)
T ss_dssp SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEE--------
T ss_pred CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEE--------
Confidence 89999999999999999765 256778899999999999988775 899999999999999988766544
Q ss_pred EEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCC
Q 011711 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT 316 (479)
Q Consensus 239 ~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~ 316 (479)
.+|...|.+++++++ ++++|+.||.|++||+.++. ....+.+|.
T Consensus 181 -----------------------------~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~-----~~~~~~~h~ 226 (340)
T 1got_B 181 -----------------------------TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-----CRQTFTGHE 226 (340)
T ss_dssp -----------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-----EEEEECCCS
T ss_pred -----------------------------cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe-----eEEEEcCCc
Confidence 368889999999988 89999999999999998764 467788999
Q ss_pred CCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCC--CCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceE
Q 011711 317 RPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGH--TDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLE 390 (479)
Q Consensus 317 ~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h--~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~ 390 (479)
..|.+++|+ +++|++|+.||+|++||+++++.+..+..+ ...|.++.++ +++|++|+.|+.|++||+.+...+.
T Consensus 227 ~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~ 306 (340)
T 1got_B 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEee
Confidence 999999997 889999999999999999999888877633 3468888887 7899999999999999999988888
Q ss_pred EeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 011711 391 VAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (479)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd 429 (479)
.+..|...+..+.+ +|++. +|++|+.|+.|++||
T Consensus 307 ~~~~h~~~v~~~~~----s~dg~-~l~s~s~D~~i~iWd 340 (340)
T 1got_B 307 VLAGHDNRVSCLGV----TDDGM-AVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECCSSCEEEEEE----CTTSS-CEEEEETTSCEEEEC
T ss_pred EeecCCCcEEEEEE----cCCCC-EEEEEcCCccEEecC
Confidence 88888887766665 59988 899999999999997
No 25
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-38 Score=338.62 Aligned_cols=360 Identities=9% Similarity=0.010 Sum_probs=249.6
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEe
Q 011711 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVK 166 (479)
Q Consensus 87 ~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 166 (479)
.||...|++++|+|+|++||+|+.||+|+||+..+.... .... +......+++.+ +..+++
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~-------~~~~-----------~~~~V~~l~fsp-g~~L~S 74 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV-------IKLE-----------DRSAIKEMRFVK-GIYLVV 74 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE-------EECS-----------SCCCEEEEEEET-TTEEEE
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE-------EEcC-----------CCCCEEEEEEcC-CCEEEE
Confidence 468889999999999999999999999999975432110 0000 011223555666 456999
Q ss_pred CCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEE-E-----------ecCC
Q 011711 167 GDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV-I-----------NLGA 234 (479)
Q Consensus 167 g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~-~-----------~~~~ 234 (479)
++.|++|++||+.++ +.+..+. |.+.|++++|+|++++|++|+.||+|++||+.+++.... + .+..
T Consensus 75 ~s~D~~v~lWd~~~~-~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~ 152 (902)
T 2oaj_A 75 INAKDTVYVLSLYSQ-KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS 152 (902)
T ss_dssp EETTCEEEEEETTTC-SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCC
T ss_pred EECcCeEEEEECCCC-cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCC
Confidence 999999999999988 6777776 778999999999999999999999999999998876411 1 1234
Q ss_pred ceeEEEeC---CCEEEE-EcCCeEEEEEcCCCceEE-ecCC------------------CccEEEEEEcCC--EEEEEeC
Q 011711 235 EVGSLICE---GPWVFV-GMPNVVKAWHIESSAEFS-LDGP------------------VGEVYSMVVANE--MLFAGAQ 289 (479)
Q Consensus 235 ~~~~~~~~---~~~l~~-~~~~~i~v~~~~~~~~~~-~~~~------------------~~~v~~~~~~~~--~l~~g~~ 289 (479)
.+.++.+. +..+++ +.++.| +||+++++... +..| ...|.+++|+|+ +|++|+.
T Consensus 153 ~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~ 231 (902)
T 2oaj_A 153 PIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE 231 (902)
T ss_dssp CCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEET
T ss_pred CeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEEC
Confidence 56666653 234444 578899 99999987653 3333 477999999988 9999999
Q ss_pred CCcEEEEEccCCCCCcccceeeec-------------CCCCCeEEEEEc-------CCEEEEE-----------------
Q 011711 290 DGNILVWKGIPNTQNPFQLAALLK-------------GHTRPVTCLAVG-------GKRLYSG----------------- 332 (479)
Q Consensus 290 dg~i~iwd~~~~~~~~~~~~~~~~-------------~h~~~i~~l~~~-------~~~l~sg----------------- 332 (479)
||.|++||+.++............ .|..+|.+++|+ +..+++|
T Consensus 232 Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~ 311 (902)
T 2oaj_A 232 DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLG 311 (902)
T ss_dssp TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEE
T ss_pred CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecC
Confidence 999999999775421000000001 123356666662 1234444
Q ss_pred -----------------------------------------------------------eCCCeEEEEECCCCcEEEE--
Q 011711 333 -----------------------------------------------------------SMDNTIRVWDLDTLEAVMT-- 351 (479)
Q Consensus 333 -----------------------------------------------------------s~dg~I~iwd~~~~~~~~~-- 351 (479)
+.||.|++||+.++.....
T Consensus 312 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~ 391 (902)
T 2oaj_A 312 YTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKAS 391 (902)
T ss_dssp ECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGG
T ss_pred CCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccc
Confidence 3345555555544432211
Q ss_pred -----EeCCCCCcEEEE----------------------------------Ec--CCEEEEEeCCCeEEEEEcCCCcce-
Q 011711 352 -----LNGHTDAPMSLL----------------------------------CW--DQYLLSCSLDNTIKVWIMTEEGNL- 389 (479)
Q Consensus 352 -----~~~h~~~v~~~~----------------------------------~~--~~~l~s~s~dg~i~iwd~~~~~~~- 389 (479)
+..|...|.++. ++ +++|++|+.|++|++||+.++...
T Consensus 392 ~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~ 471 (902)
T 2oaj_A 392 LFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD 471 (902)
T ss_dssp GSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT
T ss_pred cCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC
Confidence 112222333332 22 579999999999999999876421
Q ss_pred ---EEe--c-----cccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCc-------------------------
Q 011711 390 ---EVA--Y-----THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFM------------------------- 434 (479)
Q Consensus 390 ---~~~--~-----~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~------------------------- 434 (479)
... . .|...+..+++ +|+++ +||+|+.||+|++||+.+++
T Consensus 472 ~~~~~~~l~~~~~~~h~~~V~svaf----spdg~-~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (902)
T 2oaj_A 472 NASFEVNLSRTLNKAKELAVDKISF----AAETL-ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNT 546 (902)
T ss_dssp TBCEEEEHHHHTTCSSSCCEEEEEE----ETTTT-EEEEEETTSCEEEEEEEECCC---------------CCSCCGGGS
T ss_pred CceEEeechhhcCCCCCCceeEEEe----cCCCC-eEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCC
Confidence 010 0 34444555555 59998 89999999999999997653
Q ss_pred --------------------eeeeee-ccCceEEEEECCCceEEEEcCCCcEEEEEeccC
Q 011711 435 --------------------ERGRIF-SRREVRVIETGPDGLFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 435 --------------------~~~~~~-~~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~~ 473 (479)
++..+. |.+.|++++|+|||+|++|+.||+|++||+...
T Consensus 547 ~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~lwd~~~~ 606 (902)
T 2oaj_A 547 NGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLMLIDRRGP 606 (902)
T ss_dssp SCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTSEEEEEETTSEEEEEETTTT
T ss_pred ccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCcEEEEEeCCCcEEEEECCCC
Confidence 123333 588999999999999999999999999998654
No 26
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.4e-36 Score=301.42 Aligned_cols=313 Identities=22% Similarity=0.319 Sum_probs=262.8
Q ss_pred eeeeecCCC-eEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 011711 145 RTLERTTPK-NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHT 223 (479)
Q Consensus 145 ~~~~~~~~~-~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~ 223 (479)
..+.+|... ..|..+....+++|+.|+.|++||+.++ +.+..+.+|.+.|++++|++++ +|++|+.||+|++||+.+
T Consensus 115 ~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~-~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~ 192 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINK-KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK 192 (464)
T ss_dssp EEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT
T ss_pred EEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCC-cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC
Confidence 455566555 4688888899999999999999999998 8899999999999999999888 999999999999999999
Q ss_pred CceEEEEe-cCCceeEEEe----CCCEEE-EEcCCeEEEEEcCCCc------------------------eEEecCCCcc
Q 011711 224 GQSASVIN-LGAEVGSLIC----EGPWVF-VGMPNVVKAWHIESSA------------------------EFSLDGPVGE 273 (479)
Q Consensus 224 ~~~~~~~~-~~~~~~~~~~----~~~~l~-~~~~~~i~v~~~~~~~------------------------~~~~~~~~~~ 273 (479)
++.+..+. +...+.++.. ++.+++ ++.|+.|++||+.+.. .....+|...
T Consensus 193 ~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (464)
T 3v7d_B 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272 (464)
T ss_dssp TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSC
T ss_pred CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccce
Confidence 99998887 4455665553 345555 4589999999998775 2356788999
Q ss_pred EEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEE
Q 011711 274 VYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMT 351 (479)
Q Consensus 274 v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~ 351 (479)
+.++...++.+++|+.||.|++||+.+.. ....+.+|...|.+++++ ++++++|+.||.|++||+++++++.+
T Consensus 273 v~~~~~~~~~l~~~~~d~~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 347 (464)
T 3v7d_B 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQMK-----CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT 347 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCc-----EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence 99999999999999999999999998753 467788999999999997 78999999999999999999999999
Q ss_pred EeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC
Q 011711 352 LNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (479)
Q Consensus 352 ~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 431 (479)
+.+|...|.++.+++++|++++.||.|++||+.+....... .+........+ +++++ ++++++ |+.|++||+.
T Consensus 348 ~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~----~~~~~-~l~~~~-dg~i~iwd~~ 420 (464)
T 3v7d_B 348 LQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTF----YVSDN-ILVSGS-ENQFNIYNLR 420 (464)
T ss_dssp ECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEE-ECTTCCCEEEE----EECSS-EEEEEE-TTEEEEEETT
T ss_pred EeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeee-cCCCCccEEEE----EeCCC-EEEEec-CCeEEEEECC
Confidence 99999999999999999999999999999999887654433 33444444455 47887 788887 8999999999
Q ss_pred CCceeee--eeccCceEEEEECCCceEEEEcCCCcEEEEEec
Q 011711 432 SFMERGR--IFSRREVRVIETGPDGLFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 432 ~~~~~~~--~~~~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~ 471 (479)
+++.+.. ..+...|.+++|+++.++++++.||.+.+|-++
T Consensus 421 ~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~ld 462 (464)
T 3v7d_B 421 SGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD 462 (464)
T ss_dssp TCCEEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CCcEEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEEEee
Confidence 9998875 345888999999854477778888877766543
No 27
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1e-37 Score=300.05 Aligned_cols=281 Identities=19% Similarity=0.264 Sum_probs=235.9
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCee
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 164 (479)
.+.||...|++++|+|+|++|+|||.||+++|||..+.... ... ..+......+++.+.+..+
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~----~~~-------------~~~~~~v~~~~~sp~g~~l 121 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE----HAV-------------TMPCTWVMACAYAPSGCAI 121 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE----EEE-------------ECSSSCCCEEEECTTSSEE
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcc----eEE-------------ecCCCCEEEEEECCCCCEE
Confidence 57899999999999999999999999999999985543210 000 0011223567788888899
Q ss_pred EeCCCCCeEEEeecCCC-----ceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEE
Q 011711 165 VKGDECRFWHSWFCGEG-----FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSL 239 (479)
Q Consensus 165 ~~g~~d~~i~vw~~~~~-----~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~ 239 (479)
++|+.|+.+++|++... ......+.+|.+.|.+++|+|++..|++++.|++|++||+++++.+..+
T Consensus 122 asg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~--------- 192 (354)
T 2pbi_B 122 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF--------- 192 (354)
T ss_dssp EEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE---------
T ss_pred EEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE---------
Confidence 99999999999998643 2456778899999999999999999999999999999999998876554
Q ss_pred EeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcC----CEEEEEeCCCcEEEEEccCCCCCcccceeeecCC
Q 011711 240 ICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN----EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGH 315 (479)
Q Consensus 240 ~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h 315 (479)
.+|...|.++.+.+ +.|++|+.||.|++||++++. ....+.+|
T Consensus 193 ----------------------------~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~-----~~~~~~~h 239 (354)
T 2pbi_B 193 ----------------------------HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ-----CVQAFETH 239 (354)
T ss_dssp ----------------------------ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC-----EEEEECCC
T ss_pred ----------------------------cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc-----EEEEecCC
Confidence 35778889988865 389999999999999998864 46778899
Q ss_pred CCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCC--CCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcce
Q 011711 316 TRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT--DAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNL 389 (479)
Q Consensus 316 ~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~--~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~ 389 (479)
...|.+++|+ +++|++|+.|++|++||+++++.+..+..+. ..+.++.++ +.+|++++.|+.|++||+.++..+
T Consensus 240 ~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~ 319 (354)
T 2pbi_B 240 ESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV 319 (354)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE
T ss_pred CCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceE
Confidence 9999999996 8899999999999999999998887776543 356778877 789999999999999999998888
Q ss_pred EEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 011711 390 EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (479)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd 429 (479)
..+..|...+..+.+ +|+++ +|++++.|+.|++|+
T Consensus 320 ~~l~~h~~~v~~l~~----spdg~-~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 320 SILFGHENRVSTLRV----SPDGT-AFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEECCCSSCEEEEEE----CTTSS-CEEEEETTSEEEEEC
T ss_pred EEEECCCCcEEEEEE----CCCCC-EEEEEcCCCCEEecC
Confidence 888888887766666 59998 899999999999996
No 28
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-37 Score=291.15 Aligned_cols=292 Identities=22% Similarity=0.291 Sum_probs=220.6
Q ss_pred eeeeeecCCCeEEEeccCCeeEeCCCCCeEEEeecCCC-ceeeEEE-ec-ccccEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 011711 144 KRTLERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEG-FTMLAKL-EG-HKKAVSGIALPLRSDKLYSGSRDGTVQLWD 220 (479)
Q Consensus 144 ~~~~~~~~~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~-~~~~~~~-~~-H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd 220 (479)
...+.+|.....|+.+....+++|+.|++|++|++..+ .+.+..+ .+ |...|.+++|+|++++|++++.|++|++||
T Consensus 7 ~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~ 86 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA 86 (330)
T ss_dssp EEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 35566777788888888889999999999999999875 3556666 45 999999999999999999999999999999
Q ss_pred CCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEc
Q 011711 221 CHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKG 298 (479)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~ 298 (479)
+....... ........+.+|...|.+++|+|+ +|++|+.|+.|++||+
T Consensus 87 ~~~~~~~~------------------------------~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~ 136 (330)
T 2hes_X 87 KEESADRT------------------------------FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET 136 (330)
T ss_dssp C-------------------------------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEEC
T ss_pred cccCcCcc------------------------------ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEec
Confidence 86432100 000011245679999999999987 9999999999999999
Q ss_pred cCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCC--cEEEEEeCCCCCcEEEEEcC----CEEE
Q 011711 299 IPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTL--EAVMTLNGHTDAPMSLLCWD----QYLL 370 (479)
Q Consensus 299 ~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~--~~~~~~~~h~~~v~~~~~~~----~~l~ 370 (479)
..... ..+....+.+|...|.+++|+ +.+|++|+.|++|++||+.++ +++..+.+|...|.++.+.. .+|+
T Consensus 137 ~~~~~-~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 215 (330)
T 2hes_X 137 DESGE-EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC 215 (330)
T ss_dssp CTTCC-CCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred cCCCC-CeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence 54321 134567788999999999996 889999999999999999876 67889999999999999983 4899
Q ss_pred EEeCCCeEEEEEcCCCc--------ceEEecc-ccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCc--eeeee
Q 011711 371 SCSLDNTIKVWIMTEEG--------NLEVAYT-HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFM--ERGRI 439 (479)
Q Consensus 371 s~s~dg~i~iwd~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~ 439 (479)
+++.|++|++||+.... ....+.. |...+..+.+ ++++ +|++++.|+.|++||..+++ .....
T Consensus 216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~----s~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~ 289 (330)
T 2hes_X 216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAW----GFNG--LIASVGADGVLAVYEEVDGEWKVFAKR 289 (330)
T ss_dssp EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEE----CTTS--CEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEE----cCCC--EEEEEeCCCEEEEEEcCCCceEEEecc
Confidence 99999999999986541 1222222 4444444444 4554 68899999999999998764 22222
Q ss_pred --eccC-ceEEEEECC--Cc-eEEEEcCCCcEEEEEecc
Q 011711 440 --FSRR-EVRVIETGP--DG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 440 --~~~~-~v~~l~~s~--~g-~l~sg~~dg~v~vw~~~~ 472 (479)
.|.. .|.+++|+| ++ +|++|+.||.|++|++..
T Consensus 290 ~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 290 ALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp SCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 2344 899999999 56 899999999999999864
No 29
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.7e-37 Score=345.92 Aligned_cols=360 Identities=14% Similarity=0.168 Sum_probs=295.9
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCC--eEEEeccCC
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK--NVCYHWLSG 162 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~c~~~~~~ 162 (479)
.+.+|...|++++|+|+|+++|+|+.||+|+||+..+... ...+..|... .+++.+.+.
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~-------------------~~~~~~h~~~v~~~~~s~~~~ 670 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK-------------------LLDIKAHEDEVLCCAFSSDDS 670 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-------------------EEEECCCSSCEEEEEECTTSS
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE-------------------EEEeccCCCCEEEEEEecCCC
Confidence 4578999999999999999999999999999998665432 1122233333 445666677
Q ss_pred eeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCC--CCCEEEEEeCCCcEEEEECCCCceEEEEecC-CceeEE
Q 011711 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL--RSDKLYSGSRDGTVQLWDCHTGQSASVINLG-AEVGSL 239 (479)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~--~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~-~~~~~~ 239 (479)
.+++|+.|+.|++||+.++ +.+..+.+|...|.+++|+| ++.++++++.|+.|++||+.+++....+..+ ..+.++
T Consensus 671 ~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~ 749 (1249)
T 3sfz_A 671 YIATCSADKKVKIWDSATG-KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749 (1249)
T ss_dssp EEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEE
T ss_pred EEEEEeCCCeEEEEECCCC-ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEE
Confidence 9999999999999999998 88999999999999999999 5568999999999999999999988887644 445555
Q ss_pred E--eCCCEEEEE-cCCeEEEEEcCCCceEE--------------------------------------------------
Q 011711 240 I--CEGPWVFVG-MPNVVKAWHIESSAEFS-------------------------------------------------- 266 (479)
Q Consensus 240 ~--~~~~~l~~~-~~~~i~v~~~~~~~~~~-------------------------------------------------- 266 (479)
. +++++++++ .|+.|++||+.++....
T Consensus 750 ~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~ 829 (1249)
T 3sfz_A 750 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS 829 (1249)
T ss_dssp EECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC
T ss_pred EEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC
Confidence 4 467766654 78999999987654321
Q ss_pred ------ecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCC
Q 011711 267 ------LDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDN 336 (479)
Q Consensus 267 ------~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg 336 (479)
..+|...|.+++++++ .+++++.||.|++||+.++. ....+.+|...|.+++|+ ++++++++.||
T Consensus 830 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~-----~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg 904 (1249)
T 3sfz_A 830 GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL-----KVADCRGHLSWVHGVMFSPDGSSFLTASDDQ 904 (1249)
T ss_dssp CEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-----eeeecCCCccceEEEEECCCCCEEEEEeCCC
Confidence 1156778889999987 99999999999999998753 467788999999999997 88999999999
Q ss_pred eEEEEECCCCcE-----------------------------EEEE--------eCCCCCcEEEEEc--CCEEEEEeCCCe
Q 011711 337 TIRVWDLDTLEA-----------------------------VMTL--------NGHTDAPMSLLCW--DQYLLSCSLDNT 377 (479)
Q Consensus 337 ~I~iwd~~~~~~-----------------------------~~~~--------~~h~~~v~~~~~~--~~~l~s~s~dg~ 377 (479)
.|++||+.+... +... ..+...+.++.++ ++++++++.||.
T Consensus 905 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~ 984 (1249)
T 3sfz_A 905 TIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGA 984 (1249)
T ss_dssp CEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSC
T ss_pred eEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCC
Confidence 999999753100 0001 1123457777776 789999999999
Q ss_pred EEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCceEE
Q 011711 378 IKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDGLFF 457 (479)
Q Consensus 378 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g~l~ 457 (479)
|++||+.++........|...+..+.+ +|+++ ++++++.|+.|++||+.+++......+...+.++.|+|++.++
T Consensus 985 i~i~d~~~~~~~~~~~~h~~~v~~l~~----s~dg~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 1059 (1249)
T 3sfz_A 985 IKIIELPNNRVFSSGVGHKKAVRHIQF----TADGK-TLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLL 1059 (1249)
T ss_dssp CEEEETTTTSCEEECCCCSSCCCCEEE----CSSSS-CEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEE
T ss_pred EEEEEcCCCceeeecccCCCceEEEEE----CCCCC-EEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEE
Confidence 999999999888888888888877777 59988 8889999999999999999888777789999999999999999
Q ss_pred EEcCCCcEEEEEeccCC
Q 011711 458 TGDGTGMLSVWKILAKP 474 (479)
Q Consensus 458 sg~~dg~v~vw~~~~~~ 474 (479)
+++.||.|++||+.+++
T Consensus 1060 ~~~~dg~v~vwd~~~~~ 1076 (1249)
T 3sfz_A 1060 SWSFDGTVKVWNVITGR 1076 (1249)
T ss_dssp EEESSSEEEEEETTTTC
T ss_pred EEECCCcEEEEECCCCc
Confidence 99999999999997754
No 30
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.5e-37 Score=305.85 Aligned_cols=315 Identities=13% Similarity=0.131 Sum_probs=249.1
Q ss_pred CCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEeCCCC
Q 011711 91 KSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDEC 170 (479)
Q Consensus 91 ~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~d 170 (479)
..+++++|+|+|+++++++.||++++|+..+........ . .......++.+....+++|+.|
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~-------~-----------~~~~~~~~~~~~~~~l~~~~~d 118 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK-------R-----------ADYTAVDTAKLQMRRFILGTTE 118 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSC-------S-----------CCEEEEEEECSSSCEEEEEETT
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEe-------c-----------CCceEEEEEecCCCEEEEEECC
Confidence 345789999999999999999999999866543210000 0 0001233455667789999999
Q ss_pred CeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEc
Q 011711 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGM 250 (479)
Q Consensus 171 ~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (479)
+.|++||+.++ +....+.+|.+.|++++|+|++++|++++.|++|++||+.+++.+..+
T Consensus 119 g~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-------------------- 177 (420)
T 3vl1_A 119 GDIKVLDSNFN-LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL-------------------- 177 (420)
T ss_dssp SCEEEECTTSC-EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE--------------------
T ss_pred CCEEEEeCCCc-ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE--------------------
Confidence 99999999987 778888899999999999999999999999999999999988766543
Q ss_pred CCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeec---CCCCCeEEEEE-
Q 011711 251 PNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLK---GHTRPVTCLAV- 324 (479)
Q Consensus 251 ~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~---~h~~~i~~l~~- 324 (479)
.+|...|.+++|+++ .|++++.||.|++||+.++.. ...+. .|...|.++++
T Consensus 178 -----------------~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-----~~~~~~~~~~~~~v~~~~~~ 235 (420)
T 3vl1_A 178 -----------------IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT-----IHTFNRKENPHDGVNSIALF 235 (420)
T ss_dssp -----------------ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE-----EEEECBTTBTTCCEEEEEEE
T ss_pred -----------------cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce-----eEEeecCCCCCCCccEEEEe
Confidence 368889999999987 899999999999999987642 33343 35556666665
Q ss_pred --------------------c--CCEEEEEeCCCeEEEEECCCCcEEEEEe-CCCCCcEEEEEc--CC-EEEEEeCCCeE
Q 011711 325 --------------------G--GKRLYSGSMDNTIRVWDLDTLEAVMTLN-GHTDAPMSLLCW--DQ-YLLSCSLDNTI 378 (479)
Q Consensus 325 --------------------~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~v~~~~~~--~~-~l~s~s~dg~i 378 (479)
+ ++++++|+.||.|++||+++++.+..+. .|...+.++.++ +. +|++++.||.|
T Consensus 236 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i 315 (420)
T 3vl1_A 236 VGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGML 315 (420)
T ss_dssp ECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred cCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeE
Confidence 3 6799999999999999999999888775 478889999998 44 99999999999
Q ss_pred EEEEcCCCcc-eEEecc-ccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCcee----------eeeeccCceE
Q 011711 379 KVWIMTEEGN-LEVAYT-HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMER----------GRIFSRREVR 446 (479)
Q Consensus 379 ~iwd~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~----------~~~~~~~~v~ 446 (479)
++||+++.+. +..+.. +...+..+. .++++ +|++++.|+.|++|++...... ....+...|.
T Consensus 316 ~vwd~~~~~~~~~~~~~~~~~~v~~~~-----~~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 389 (420)
T 3vl1_A 316 AQWDLRSPECPVGEFLINEGTPINNVY-----FAAGA-LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVS 389 (420)
T ss_dssp EEEETTCTTSCSEEEEESTTSCEEEEE-----EETTE-EEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCC
T ss_pred EEEEcCCCcCchhhhhccCCCCceEEE-----eCCCC-EEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceE
Confidence 9999998754 555555 333333332 25666 8999999999999999874222 2223467899
Q ss_pred EEEECCCce----EEEEcCCCcEEEEEecc
Q 011711 447 VIETGPDGL----FFTGDGTGMLSVWKILA 472 (479)
Q Consensus 447 ~l~~s~~g~----l~sg~~dg~v~vw~~~~ 472 (479)
+++|+|++. +++.+.+|.+.+|++++
T Consensus 390 ~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 390 QFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 999999884 88999999999999875
No 31
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.7e-36 Score=288.48 Aligned_cols=318 Identities=17% Similarity=0.237 Sum_probs=256.2
Q ss_pred CCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEeCC
Q 011711 89 HKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGD 168 (479)
Q Consensus 89 h~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~ 168 (479)
|..+|.+++|+|||++++.+..++.+.+|........ .....+......+++.+....+++++
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~h~~~v~~~~~~~~~~~l~~~~ 70 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQ-----------------INTLNHGEVVCAVTISNPTRHVYTGG 70 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEE-----------------EEEECCSSCCCEEEECSSSSEEEEEC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccc-----------------ceeccCCCceEEEEEecCCcEEEEcC
Confidence 3456789999999999999988888777732221110 00001122234566666777888888
Q ss_pred CCCeEEEeecCCCc--eeeEEEe--cccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCC
Q 011711 169 ECRFWHSWFCGEGF--TMLAKLE--GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP 244 (479)
Q Consensus 169 ~d~~i~vw~~~~~~--~~~~~~~--~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (479)
|+.|++|++.++. ..+..+. +|...|.+++|+|++++|++++.|+.|++||+.+++....
T Consensus 71 -dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--------------- 134 (337)
T 1gxr_A 71 -KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK--------------- 134 (337)
T ss_dssp -BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE---------------
T ss_pred -CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCccee---------------
Confidence 9999999998752 2334444 7999999999999999999999999999999988763221
Q ss_pred EEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEE
Q 011711 245 WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCL 322 (479)
Q Consensus 245 ~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l 322 (479)
.....|...+.+++++++ .+++++.||.|++||+.++. ....+..|...|.++
T Consensus 135 --------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-----~~~~~~~~~~~i~~~ 189 (337)
T 1gxr_A 135 --------------------AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-----LVRQFQGHTDGASCI 189 (337)
T ss_dssp --------------------EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEE
T ss_pred --------------------eecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-----eeeeeecccCceEEE
Confidence 123457788999999877 89999999999999998753 467788899999999
Q ss_pred EEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCc
Q 011711 323 AVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNED 398 (479)
Q Consensus 323 ~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 398 (479)
+++ ++++++++.||.|++||+++++.+..+. +...+.++.++ ++++++++.|+.|++||+++.+. ..+..+...
T Consensus 190 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~ 267 (337)
T 1gxr_A 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESC 267 (337)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSC
T ss_pred EECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccc
Confidence 996 8899999999999999999999888876 67788999887 78999999999999999987764 345556665
Q ss_pred cceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcCCCcEEEEEec
Q 011711 399 HGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~ 471 (479)
+..+.+ +|+++ ++++++.|+.|++||+.+++......+...+.+++|+|++ +|++++.||.|++|++.
T Consensus 268 v~~~~~----~~~~~-~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 268 VLSLKF----AYCGK-WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEEEE----CTTSS-EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred eeEEEE----CCCCC-EEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 555554 68888 8889999999999999999998888889999999999999 99999999999999974
No 32
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.1e-38 Score=305.91 Aligned_cols=291 Identities=19% Similarity=0.257 Sum_probs=238.1
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeec--CCCeEEEeccCC
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERT--TPKNVCYHWLSG 162 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~c~~~~~~ 162 (479)
.+.||...|++++|+|+|.+|+||+.||+++|||..+... ...+..+ ....+++.+.+.
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~-------------------~~~~~~h~~~v~~~~~s~~g~ 121 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK-------------------THAIKLHCPWVMECAFAPNGQ 121 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-------------------EEEEECCCTTCCCCEECTTSS
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-------------------ceEEecCCCCEEEEEECCCCC
Confidence 5789999999999999999999999999999998654321 1111122 234667888888
Q ss_pred eeEeCCCCCeEEEeecCCC------ceeeEEEecccccEEEEEeCCC-CCEEEEEeCCCcEEEEECCCCceEEEEecCCc
Q 011711 163 NCVKGDECRFWHSWFCGEG------FTMLAKLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQSASVINLGAE 235 (479)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~------~~~~~~~~~H~~~V~~l~~s~~-~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~ 235 (479)
.+++|+.|+.+++|++.+. ......+.+|.+.|.+++|.|+ +..|++|+.|++|++||+.+++.+..+...
T Consensus 122 ~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~-- 199 (380)
T 3iz6_a 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE-- 199 (380)
T ss_dssp EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC--
T ss_pred EEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc--
Confidence 9999999999999998643 2345678899999999999987 457999999999999999999877655311
Q ss_pred eeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcC---CEEEEEeCCCcEEEEEccCCCCCcccceeee
Q 011711 236 VGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN---EMLFAGAQDGNILVWKGIPNTQNPFQLAALL 312 (479)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 312 (479)
...+|...|.++.+.+ ++|++|+.||.|++||++... +....+
T Consensus 200 ------------------------------~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~----~~~~~~ 245 (380)
T 3iz6_a 200 ------------------------------FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS----RAVRTY 245 (380)
T ss_dssp ------------------------------SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC----CCCEEE
T ss_pred ------------------------------cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC----cceEEE
Confidence 1135888899999965 399999999999999997542 246778
Q ss_pred cCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCC-------CcEEEEEc--CCEEEEEeCCCeEEEE
Q 011711 313 KGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD-------APMSLLCW--DQYLLSCSLDNTIKVW 381 (479)
Q Consensus 313 ~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~-------~v~~~~~~--~~~l~s~s~dg~i~iw 381 (479)
.+|...|.+++|+ +++|++|+.||+|++||+++++.+..+..+.. .+.+++++ +++|++|+.||.|++|
T Consensus 246 ~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vw 325 (380)
T 3iz6_a 246 HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVW 325 (380)
T ss_dssp CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEE
T ss_pred CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEE
Confidence 8999999999996 88999999999999999999999988876533 37788886 8899999999999999
Q ss_pred EcCCCcceEEe----ccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCce
Q 011711 382 IMTEEGNLEVA----YTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFME 435 (479)
Q Consensus 382 d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 435 (479)
|+...+....+ ..|...+..+.+ +|+|+ +|++|+.|+.|++|++...+.
T Consensus 326 d~~~~~~~~~~~~~~~~h~~~v~~l~~----s~dg~-~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 326 DTLLAEMVLNLGTLQNSHEGRISCLGL----SSDGS-ALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp ETTTCCEEEEECCSCSSCCCCCCEEEE----CSSSS-EEEEECTTSCEEEEECCSSSS
T ss_pred ECCCCceEEEEecccCCCCCceEEEEE----CCCCC-EEEEeeCCCCEEEEecCCCcc
Confidence 99888777666 346666666665 59998 899999999999999987543
No 33
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-38 Score=313.33 Aligned_cols=325 Identities=15% Similarity=0.198 Sum_probs=262.7
Q ss_pred CCCCCCCCCCCce-eccCC----------CCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEec
Q 011711 91 KSPPSYNCPKNNV-RVSSG----------SEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHW 159 (479)
Q Consensus 91 ~~i~~~~~s~~g~-~las~----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 159 (479)
..|.+++|+|+|+ ++|+| +.||+++||+..+.....+.. . ..+......+++.+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~-~--------------~~~~~~v~~~~~s~ 77 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIA-S--------------LQVDSKFNDLDWSH 77 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSC-C--------------CCCSSCEEEEEECS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEE-E--------------EecCCceEEEEECC
Confidence 4678999999997 99999 889999999877653210000 0 00011123556666
Q ss_pred cCCeeEeCCCCCeEEEeecCC---CceeeEEEecccccEEEEEeCCC-CCEEEEEeCCCcEEEEECCCCc------eEEE
Q 011711 160 LSGNCVKGDECRFWHSWFCGE---GFTMLAKLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQ------SASV 229 (479)
Q Consensus 160 ~~~~~~~g~~d~~i~vw~~~~---~~~~~~~~~~H~~~V~~l~~s~~-~~~l~s~s~Dg~v~vwd~~~~~------~~~~ 229 (479)
....+++|+.|+.|++|++.+ +.+.+..+.+|...|++++|+|+ +++|++++.|+.|++||+.+++ ....
T Consensus 78 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 157 (416)
T 2pm9_A 78 NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT 157 (416)
T ss_dssp SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBC
T ss_pred CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccc
Confidence 777899999999999999987 34688899999999999999998 8999999999999999998876 2111
Q ss_pred EecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcc
Q 011711 230 INLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPF 306 (479)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~ 306 (479)
+ .....|...|.+++|+++ +|++++.||.|++||+.++.
T Consensus 158 ~----------------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---- 199 (416)
T 2pm9_A 158 P----------------------------------GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK---- 199 (416)
T ss_dssp C----------------------------------CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE----
T ss_pred c----------------------------------ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC----
Confidence 0 112457888999999875 89999999999999998754
Q ss_pred cceeeecCC------CCCeEEEEEc--C-CEEEEEeCCC---eEEEEECCCC-cEEEEEe-CCCCCcEEEEEc---CCEE
Q 011711 307 QLAALLKGH------TRPVTCLAVG--G-KRLYSGSMDN---TIRVWDLDTL-EAVMTLN-GHTDAPMSLLCW---DQYL 369 (479)
Q Consensus 307 ~~~~~~~~h------~~~i~~l~~~--~-~~l~sgs~dg---~I~iwd~~~~-~~~~~~~-~h~~~v~~~~~~---~~~l 369 (479)
....+..| ...|.+++|+ + .++++++.|+ .|++||++++ +++..+. +|...|.++.++ +++|
T Consensus 200 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l 278 (416)
T 2pm9_A 200 -EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLL 278 (416)
T ss_dssp -EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCE
T ss_pred -cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeE
Confidence 24445554 7899999997 3 5899999999 9999999986 6777888 899999999985 6799
Q ss_pred EEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee---------
Q 011711 370 LSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF--------- 440 (479)
Q Consensus 370 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--------- 440 (479)
++++.|+.|++||+++.+.+..+..|...+..+.+ +|++..++++++.|+.|++||+.+........
T Consensus 279 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~----s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 354 (416)
T 2pm9_A 279 LSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKF----APEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQES 354 (416)
T ss_dssp EEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEE----CTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------
T ss_pred EEEeCCCCEEEeeCCCCccceeecCCCCceEEEEE----CCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCC
Confidence 99999999999999999888888888887777776 59885599999999999999998765433210
Q ss_pred ---------------------------ccCceEEEEECCCc-eEEEEcCCCcEEEEEeccC
Q 011711 441 ---------------------------SRREVRVIETGPDG-LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 441 ---------------------------~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~ 473 (479)
+...+.+++|+|+| +|++++.||.|+||++.++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 355 ETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 34567799999999 9999999999999999865
No 34
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=8.8e-37 Score=302.96 Aligned_cols=319 Identities=24% Similarity=0.336 Sum_probs=268.3
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCee
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 164 (479)
.+.||...+.. +++++|.++++|+.||++++|+..+... ...+.+|.....|..+....+
T Consensus 113 ~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~-------------------~~~~~~h~~~v~~~~~~~~~l 172 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKC-------------------LRTLVGHTGGVWSSQMRDNII 172 (445)
T ss_dssp EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCE-------------------EEECCCCSSCEEEEEEETTEE
T ss_pred EecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcE-------------------EEEEcCCCCCEEEEEecCCEE
Confidence 46788887643 4677899999999999999998654321 223334555677888888899
Q ss_pred EeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec-CCceeEEEeCC
Q 011711 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL-GAEVGSLICEG 243 (479)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~ 243 (479)
++|+.|+.|++||+.++ +.+..+.+|...|.+++|+ ++.|++++.||+|++||+.+++.+..+.. ...+.++.+++
T Consensus 173 ~s~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~ 249 (445)
T 2ovr_B 173 ISGSTDRTLKVWNAETG-ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG 249 (445)
T ss_dssp EEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECS
T ss_pred EEEeCCCeEEEEECCcC-cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECC
Confidence 99999999999999998 8899999999999999995 67899999999999999999999888764 45677777777
Q ss_pred CEEEE-EcCCeEEEEEcCCCceE-EecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEE
Q 011711 244 PWVFV-GMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (479)
Q Consensus 244 ~~l~~-~~~~~i~v~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~ 321 (479)
.++++ +.++.|++||+++++.. .+.+|...|.++.+++..+++|+.||.|++||+.++. ....+.+|...+.+
T Consensus 250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~v~~ 324 (445)
T 2ovr_B 250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN-----CIHTLTGHQSLTSG 324 (445)
T ss_dssp SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC-----EEEEECCCCSCEEE
T ss_pred CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCC-----EEEEEcCCcccEEE
Confidence 76665 47999999999988765 5678999999999988899999999999999998764 46778899999999
Q ss_pred EEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeC---CCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccc-cC
Q 011711 322 LAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNG---HTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTH-NE 397 (479)
Q Consensus 322 l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~ 397 (479)
+.++++++++|+.||.|++||+++++.+..+.. |...|.++.+++++|++++.||.|++||+.+++.+..+... ..
T Consensus 325 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 404 (445)
T 2ovr_B 325 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 404 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTG
T ss_pred EEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccC
Confidence 999999999999999999999999999999987 88889999999999999999999999999998877766321 12
Q ss_pred ccceEEEeeeeCCCCCcEEEEEeCCCe----EEEeecCC
Q 011711 398 DHGVLALGGLNDPDGNPVLICSCNDDS----VHLYELPS 432 (479)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~s~~~dg~----v~iwd~~~ 432 (479)
........+.++|++. ++++++.||+ |.+||++.
T Consensus 405 ~~~~~v~~~~~s~~~~-~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 405 GSGGVVWRIRASNTKL-VCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp GGTCEEEEEEECSSEE-EEEEECSSSSSCCEEEEEECCC
T ss_pred CCCceEEEEEecCCEE-EEEEcccCCCCccEEEEEECCC
Confidence 2233344455578887 8999999997 99999875
No 35
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-36 Score=296.62 Aligned_cols=303 Identities=21% Similarity=0.320 Sum_probs=230.8
Q ss_pred CCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCe-eeeeec--CCCeEEEeccCCee
Q 011711 88 NHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSK-RTLERT--TPKNVCYHWLSGNC 164 (479)
Q Consensus 88 gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~c~~~~~~~~ 164 (479)
+|...|.+++|||||++||+|+ |++++||+..+......-..+.. ...++.... ...... ....+++.+.+..+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSA--ANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccc--cccccccccccccCCCceeEEEEEECCCCCEE
Confidence 6999999999999999999988 89999998765432100000000 000000000 000000 12356777888899
Q ss_pred EeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCC
Q 011711 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP 244 (479)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (479)
++|+.|+.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.|++|++||+.++++...+.
T Consensus 139 ~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~------------- 204 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENR-KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS------------- 204 (393)
T ss_dssp EEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-------------
T ss_pred EEEcCCCeEEEEECCCC-cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-------------
Confidence 99999999999999988 8889999999999999999999999999999999999999988765543
Q ss_pred EEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcC-C--EEEEEeCCCcEEEEEccCCCCCcc--cceeeecCCCCCe
Q 011711 245 WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN-E--MLFAGAQDGNILVWKGIPNTQNPF--QLAALLKGHTRPV 319 (479)
Q Consensus 245 ~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~-~--~l~~g~~dg~i~iwd~~~~~~~~~--~~~~~~~~h~~~i 319 (479)
+...+.++++++ + +|++|+.||.|++||+.++..... .......+|...|
T Consensus 205 -------------------------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v 259 (393)
T 1erj_A 205 -------------------------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 259 (393)
T ss_dssp -------------------------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCE
T ss_pred -------------------------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCE
Confidence 345678888876 3 899999999999999987642100 0001126799999
Q ss_pred EEEEEc--CCEEEEEeCCCeEEEEECCC------------CcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEc
Q 011711 320 TCLAVG--GKRLYSGSMDNTIRVWDLDT------------LEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIM 383 (479)
Q Consensus 320 ~~l~~~--~~~l~sgs~dg~I~iwd~~~------------~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~ 383 (479)
.+++|+ +++|++|+.|++|++||+++ +.+...+.+|...|.++.+. +.+|++++.|+.|++||+
T Consensus 260 ~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~ 339 (393)
T 1erj_A 260 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339 (393)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 999996 88999999999999999976 34567788999999999987 789999999999999999
Q ss_pred CCCcceEEeccccCccceEEEee--eeCCCCCcEEEEEeCCCeEEEeecCCC
Q 011711 384 TEEGNLEVAYTHNEDHGVLALGG--LNDPDGNPVLICSCNDDSVHLYELPSF 433 (479)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~s~~~dg~v~iwd~~~~ 433 (479)
.++..+..+..|...+..+.+.. .++|+++ +|++|+.|++|++|++...
T Consensus 340 ~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~-~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 340 KSGNPLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSCTTCTTCE-EEEEEETTSEEEEEEEEEC
T ss_pred CCCeEEEEECCCCCCEEEEEecCCcCcCCCCC-EEEEECCCCcEEECccccc
Confidence 99988888888887776666542 1234666 8999999999999998643
No 36
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=6.8e-36 Score=295.68 Aligned_cols=276 Identities=25% Similarity=0.377 Sum_probs=237.6
Q ss_pred ecCCCeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEE
Q 011711 149 RTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSAS 228 (479)
Q Consensus 149 ~~~~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~ 228 (479)
.+.....|+.+....+++|+.|+.|++||+.++ +.+..+.+|.+.|.+++| ++++|++|+.||+|++||+.+++.+.
T Consensus 131 ~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~ 207 (435)
T 1p22_A 131 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL-ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN 207 (435)
T ss_dssp SSCCCEEEEECCSSEEEEEESSSCEEEEESSSC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred CCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCC-eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 344568899999999999999999999999888 788999999999999999 78999999999999999999988765
Q ss_pred EEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccc
Q 011711 229 VINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQL 308 (479)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 308 (479)
.+ ..|...|.++.++++.+++|+.||.|++||+.+... ...
T Consensus 208 ~~-------------------------------------~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~ 248 (435)
T 1p22_A 208 TL-------------------------------------IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD--ITL 248 (435)
T ss_dssp EE-------------------------------------CCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC--CEE
T ss_pred EE-------------------------------------cCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCC--cee
Confidence 54 357888999999999999999999999999987654 233
Q ss_pred eeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcc
Q 011711 309 AALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGN 388 (479)
Q Consensus 309 ~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 388 (479)
...+.+|...|.+++++++++++|+.||.|++||+++++.+.++.+|...+.++.++++++++++.||.|++||++++..
T Consensus 249 ~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 328 (435)
T 1p22_A 249 RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC 328 (435)
T ss_dssp EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCE
T ss_pred eeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCE
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCc---------eeeeee-ccCceEEEEECCCc-eEE
Q 011711 389 LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFM---------ERGRIF-SRREVRVIETGPDG-LFF 457 (479)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---------~~~~~~-~~~~v~~l~~s~~g-~l~ 457 (479)
+..+..|...+..+.+ ++. ++++|+.||.|++||+.++. ....+. |...|.+++| ++ .|+
T Consensus 329 ~~~~~~h~~~v~~~~~------~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~ 399 (435)
T 1p22_A 329 LRVLEGHEELVRCIRF------DNK-RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIV 399 (435)
T ss_dssp EEEECCCSSCEEEEEC------CSS-EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEE
T ss_pred EEEEeCCcCcEEEEEe------cCC-EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEE
Confidence 8888877766554433 455 89999999999999997655 444443 5788999999 55 999
Q ss_pred EEcCCCcEEEEEeccCCC
Q 011711 458 TGDGTGMLSVWKILAKPN 475 (479)
Q Consensus 458 sg~~dg~v~vw~~~~~~~ 475 (479)
+|+.||.|++||+.+.+.
T Consensus 400 s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 400 SSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp ECCSSSEEEEEC------
T ss_pred EEeCCCEEEEEECCCCCC
Confidence 999999999999987654
No 37
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-37 Score=290.92 Aligned_cols=287 Identities=20% Similarity=0.265 Sum_probs=214.6
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeee-ee-cC--CCeEEEecc
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTL-ER-TT--PKNVCYHWL 160 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~--~~~~c~~~~ 160 (479)
.+.+|+.+|++++|+++ +||+|+.||+++||+....... ....+ .. |. ...+++.+.
T Consensus 9 ~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~-----------------~~~~~~~~~h~~~v~~v~~sp~ 69 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFT-----------------LIDVLDETAHKKAIRSVAWRPH 69 (330)
T ss_dssp EEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCE-----------------EEEEECTTCCCSCEEEEEECTT
T ss_pred eeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeE-----------------EEEEEecCCccCCEEEEEECCC
Confidence 46789999999999998 9999999999999987653210 00111 01 22 235667777
Q ss_pred CCeeEeCCCCCeEEEeecCCC------ceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCC-ceEEEEecC
Q 011711 161 SGNCVKGDECRFWHSWFCGEG------FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG-QSASVINLG 233 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~------~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~-~~~~~~~~~ 233 (479)
...+++|+.|++|++|++... .+.+..+.+|.+.|.+++|+|++++|++|+.|++|++||+... +....
T Consensus 70 ~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~---- 145 (330)
T 2hes_X 70 TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYEC---- 145 (330)
T ss_dssp SSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEE----
T ss_pred CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEE----
Confidence 789999999999999998532 2567889999999999999999999999999999999999533 21111
Q ss_pred CceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceee
Q 011711 234 AEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAAL 311 (479)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 311 (479)
...+.+|...|.+++|+|+ +|++|+.|+.|++||...+. .+....
T Consensus 146 ------------------------------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~---~~~~~~ 192 (330)
T 2hes_X 146 ------------------------------ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD---WECVAV 192 (330)
T ss_dssp ------------------------------EEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---EEEEEE
T ss_pred ------------------------------EEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC---eeEEEE
Confidence 1234578899999999987 99999999999999987642 345678
Q ss_pred ecCCCCCeEEEEEc----CCEEEEEeCCCeEEEEECCCC--------cEEEEEeC-CCCCcEEEEEc-CCEEEEEeCCCe
Q 011711 312 LKGHTRPVTCLAVG----GKRLYSGSMDNTIRVWDLDTL--------EAVMTLNG-HTDAPMSLLCW-DQYLLSCSLDNT 377 (479)
Q Consensus 312 ~~~h~~~i~~l~~~----~~~l~sgs~dg~I~iwd~~~~--------~~~~~~~~-h~~~v~~~~~~-~~~l~s~s~dg~ 377 (479)
+.+|...|.+++|+ +.+|++|+.|++|++||++++ .+...+.. |...|.++.+. +.+|++++.||.
T Consensus 193 ~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~ 272 (330)
T 2hes_X 193 LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGV 272 (330)
T ss_dssp ECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSC
T ss_pred ccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCE
Confidence 89999999999996 357999999999999998764 34555655 88999999998 678999999999
Q ss_pred EEEEEcCCCcc--eEEe-ccccC-ccceEEEeeeeCC--CCCcEEEEEeCCCeEEEeecCC
Q 011711 378 IKVWIMTEEGN--LEVA-YTHNE-DHGVLALGGLNDP--DGNPVLICSCNDDSVHLYELPS 432 (479)
Q Consensus 378 i~iwd~~~~~~--~~~~-~~~~~-~~~~~~~~~~~~~--~~~~~l~s~~~dg~v~iwd~~~ 432 (479)
|++||..++.. .... ..|.. .+..+.+ +| +++ +|++++.|+.|++||++.
T Consensus 273 v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~----~~~~~~~-~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 273 LAVYEEVDGEWKVFAKRALCHGVYEINVVKW----LELNGKT-ILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEEETTEEEEEEEESCTTTTSCEEEEEE----C-----C-CEEEEETTSEEEEEEC--
T ss_pred EEEEEcCCCceEEEeccccccccceEEEEEE----ecCCCce-EEEEecCCCcEEEEEecc
Confidence 99999876532 2222 23433 3333333 56 455 899999999999999864
No 38
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.5e-35 Score=285.80 Aligned_cols=271 Identities=21% Similarity=0.332 Sum_probs=220.1
Q ss_pred CeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccc------------------cEEEEEeCCCCCEEEEEeCCC
Q 011711 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKK------------------AVSGIALPLRSDKLYSGSRDG 214 (479)
Q Consensus 153 ~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~------------------~V~~l~~s~~~~~l~s~s~Dg 214 (479)
..+++.+.+..+++|+ ++.+++|++.++ +.+..+.+|.. .|.+++|+|++++|++|+.|+
T Consensus 68 ~~v~fspdg~~la~g~-~~~v~i~~~~~g-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~ 145 (393)
T 1erj_A 68 CCVKFSNDGEYLATGC-NKTTQVYRVSDG-SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR 145 (393)
T ss_dssp CEEEECTTSSEEEEEC-BSCEEEEETTTC-CEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTS
T ss_pred EEEEECCCCCEEEEEc-CCcEEEEEecCC-CEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCC
Confidence 3555666677888876 789999999988 67777766643 499999999999999999999
Q ss_pred cEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCc
Q 011711 215 TVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGN 292 (479)
Q Consensus 215 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~ 292 (479)
+|++||+.+++.+..+ .+|...|.+++|+++ .|++|+.|+.
T Consensus 146 ~i~iwd~~~~~~~~~~-------------------------------------~~h~~~v~~~~~~p~~~~l~s~s~d~~ 188 (393)
T 1erj_A 146 LIRIWDIENRKIVMIL-------------------------------------QGHEQDIYSLDYFPSGDKLVSGSGDRT 188 (393)
T ss_dssp CEEEEETTTTEEEEEE-------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred eEEEEECCCCcEEEEE-------------------------------------ccCCCCEEEEEEcCCCCEEEEecCCCc
Confidence 9999999988765443 468889999999987 9999999999
Q ss_pred EEEEEccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEE-------eCCCCCcEEE
Q 011711 293 ILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTL-------NGHTDAPMSL 362 (479)
Q Consensus 293 i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~-------~~h~~~v~~~ 362 (479)
|++||+.++.. ...+ .+...+.+++++ +.++++|+.|+.|++||+++++.+..+ .+|...|.++
T Consensus 189 v~iwd~~~~~~-----~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v 262 (393)
T 1erj_A 189 VRIWDLRTGQC-----SLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV 262 (393)
T ss_dssp EEEEETTTTEE-----EEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEE
T ss_pred EEEEECCCCee-----EEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEE
Confidence 99999987642 3333 356789999985 789999999999999999999988877 5789999999
Q ss_pred EEc--CCEEEEEeCCCeEEEEEcCCCcc------------eEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEe
Q 011711 363 LCW--DQYLLSCSLDNTIKVWIMTEEGN------------LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLY 428 (479)
Q Consensus 363 ~~~--~~~l~s~s~dg~i~iwd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iw 428 (479)
.+. +++|++++.|+.|++||+++... ...+..|...+..+ .++|++. +|++++.|+.|++|
T Consensus 263 ~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~----~~~~~~~-~l~sgs~D~~v~iw 337 (393)
T 1erj_A 263 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV----ATTQNDE-YILSGSKDRGVLFW 337 (393)
T ss_dssp EECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEE----EECGGGC-EEEEEETTSEEEEE
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEE----EECCCCC-EEEEEeCCCeEEEE
Confidence 997 78999999999999999976432 23344455444333 3468887 89999999999999
Q ss_pred ecCCCceeeeee-ccCceEEEEECC------Cc-eEEEEcCCCcEEEEEeccC
Q 011711 429 ELPSFMERGRIF-SRREVRVIETGP------DG-LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 429 d~~~~~~~~~~~-~~~~v~~l~~s~------~g-~l~sg~~dg~v~vw~~~~~ 473 (479)
|+.+++.+..+. |...|.+++|++ ++ +|++|+.||.|++|++...
T Consensus 338 d~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 338 DKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred ECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999999887776 578899999986 56 9999999999999999764
No 39
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-36 Score=319.23 Aligned_cols=366 Identities=11% Similarity=0.064 Sum_probs=259.3
Q ss_pred CCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecC--CCeEEEecc-CCeeE
Q 011711 89 HKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTT--PKNVCYHWL-SGNCV 165 (479)
Q Consensus 89 h~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~c~~~~-~~~~~ 165 (479)
|...|++++|+|+|.++++|+.||+|++||+.+.... ......... .......|. ...+++++. ...++
T Consensus 97 ~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-----~~~i~~~~~---~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 97 VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-----SFKLDNLQK---SSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-----EEEECCHHH---HHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-----cceeccccc---cccccccCCCCeEEEEEccCCCCEEE
Confidence 5567899999999999999999999999987764320 000000000 000011222 234555553 35889
Q ss_pred eCCCCCeEEEeecCCCceeeEEEecc------------------cccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceE
Q 011711 166 KGDECRFWHSWFCGEGFTMLAKLEGH------------------KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSA 227 (479)
Q Consensus 166 ~g~~d~~i~vw~~~~~~~~~~~~~~H------------------~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~ 227 (479)
+|+.|+.| +||+.++ +.+..+.+| ...|++++|+|+|++|++++.||+|++||+.+++++
T Consensus 169 ~g~~dg~v-lWd~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVEN-EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp EECSSCEE-EEETTTT-EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred EEeCCCcE-EEECCCC-ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 99999999 9999988 777778766 578999999999999999999999999999999887
Q ss_pred EEEec-------------------CCceeEEEe----C---CCEEEEE-cC-----CeEEEEEcC---------------
Q 011711 228 SVINL-------------------GAEVGSLIC----E---GPWVFVG-MP-----NVVKAWHIE--------------- 260 (479)
Q Consensus 228 ~~~~~-------------------~~~~~~~~~----~---~~~l~~~-~~-----~~i~v~~~~--------------- 260 (479)
..... ...+.++.+ + +.+++++ .+ ..+.+|++.
T Consensus 247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~ 326 (902)
T 2oaj_A 247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKN 326 (902)
T ss_dssp EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHH
T ss_pred EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhh
Confidence 64221 124555554 2 2456665 33 378899853
Q ss_pred ---CCceE-Eec-CCCccEEEEEEcC------------CEEEEEeCCCcEEEEEccCCCCCc--ccceeee---------
Q 011711 261 ---SSAEF-SLD-GPVGEVYSMVVAN------------EMLFAGAQDGNILVWKGIPNTQNP--FQLAALL--------- 312 (479)
Q Consensus 261 ---~~~~~-~~~-~~~~~v~~~~~~~------------~~l~~g~~dg~i~iwd~~~~~~~~--~~~~~~~--------- 312 (479)
+.+.. .+. .+...|.++.+.+ ..+++++.||.|++||+.++.... .+....+
T Consensus 327 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~ 406 (902)
T 2oaj_A 327 YYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATT 406 (902)
T ss_dssp HHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEE
T ss_pred hhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeE
Confidence 11111 221 4567788887643 278889999999999986542100 0001112
Q ss_pred -------------------------cCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEE----EEE--e-----C
Q 011711 313 -------------------------KGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAV----MTL--N-----G 354 (479)
Q Consensus 313 -------------------------~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~----~~~--~-----~ 354 (479)
.+|...+.+++|+ +++|++|+.|++|++||+.+++.. ... . +
T Consensus 407 ~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~ 486 (902)
T 2oaj_A 407 SMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKA 486 (902)
T ss_dssp EEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCS
T ss_pred EEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCC
Confidence 3344444444443 779999999999999999887421 111 1 7
Q ss_pred CCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCc---------------------------------------------
Q 011711 355 HTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEG--------------------------------------------- 387 (479)
Q Consensus 355 h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~--------------------------------------------- 387 (479)
|...|.+++++ +++|++|+.||+|++||+.+.+
T Consensus 487 h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 566 (902)
T 2oaj_A 487 KELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFM 566 (902)
T ss_dssp SSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEE
T ss_pred CCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccc
Confidence 88999999998 7899999999999999997652
Q ss_pred ceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeee-----e--eccCceEEEEEC-----CC--
Q 011711 388 NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGR-----I--FSRREVRVIETG-----PD-- 453 (479)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-----~--~~~~~v~~l~~s-----~~-- 453 (479)
++..+..|...+..+++ +|+| +|++|+.|++|++||+++...+.. + .|...|++++|+ ||
T Consensus 567 ~~~~l~~h~~~V~svaf----SpdG--~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~ 640 (902)
T 2oaj_A 567 PSTAVHANKGKTSAINN----SNIG--FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGY 640 (902)
T ss_dssp EEEEECCCSCSEEEEEE----CBTS--EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSS
T ss_pred eeEEEEcCCCcEEEEEe----cCCc--EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCC
Confidence 23445556666655555 6999 899999999999999988766531 2 356779999999 87
Q ss_pred -c-eEEEEcCCCcEEEEEe
Q 011711 454 -G-LFFTGDGTGMLSVWKI 470 (479)
Q Consensus 454 -g-~l~sg~~dg~v~vw~~ 470 (479)
+ +|++|+.||+|++|++
T Consensus 641 ~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 641 SSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEEEEEEETTSEEEEEEE
T ss_pred cceEEEEEecCCcEEEEEE
Confidence 4 9999999999999999
No 40
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4e-35 Score=287.72 Aligned_cols=244 Identities=22% Similarity=0.372 Sum_probs=217.9
Q ss_pred eeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCc
Q 011711 184 MLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSA 263 (479)
Q Consensus 184 ~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~ 263 (479)
....+.+|.++|++++|+|++++|++|+.||+|++||+.+++....+
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l--------------------------------- 146 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL--------------------------------- 146 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE---------------------------------
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE---------------------------------
Confidence 35568899999999999999999999999999999999988766544
Q ss_pred eEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEE
Q 011711 264 EFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIR 339 (479)
Q Consensus 264 ~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~ 339 (479)
.+|...|.+++|+++ +|++|+.||.|++||+.+.. ....+.+|...|.+++|+ ++++++|+.|++|+
T Consensus 147 ----~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~-----~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~ 217 (410)
T 1vyh_C 147 ----KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE-----CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 217 (410)
T ss_dssp ----CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC-----EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred ----eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence 468899999999987 99999999999999997653 477789999999999996 88999999999999
Q ss_pred EEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCC------
Q 011711 340 VWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPD------ 411 (479)
Q Consensus 340 iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 411 (479)
+||+++++++.++.+|...+.++.+. +.+|++++.|+.|++||+.+......+..|...+..+.+. |+
T Consensus 218 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~~~~~~~ 293 (410)
T 1vyh_C 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA----PESSYSSI 293 (410)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----CSCGGGGG
T ss_pred EEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEc----Ccccccch
Confidence 99999999999999999999999987 7899999999999999999988888888887776666653 54
Q ss_pred --------------CCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 412 --------------GNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 412 --------------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
+. ++++|+.|+.|++||+.++..+..+. |...|.+++|+|++ +|++|+.||.|++||+.+++
T Consensus 294 ~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 294 SEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 371 (410)
T ss_dssp GGCCSCC-------CC-EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred hhhccccccccCCCCC-EEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 44 89999999999999999998888776 57789999999999 99999999999999997654
No 41
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=9.3e-36 Score=294.69 Aligned_cols=314 Identities=21% Similarity=0.314 Sum_probs=241.6
Q ss_pred eeeeeecCccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcC
Q 011711 60 LCVYFLEGRCNRNPCRFAHTESQTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSD 139 (479)
Q Consensus 60 ~~~~~~~~~~~~~p~~~l~~~~p~~~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 139 (479)
+-..|+.|++...+- ....+|...|.++++ +|.++++|+.||+|++||..+..
T Consensus 112 ~~~~W~~~~~~~~~~---------~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~---------------- 164 (435)
T 1p22_A 112 IESNWRCGRHSLQRI---------HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE---------------- 164 (435)
T ss_dssp HHHHTTTCCCCCCCE---------ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC----------------
T ss_pred HHhhhccCCccceEE---------ecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe----------------
Confidence 455677665543211 112346666676665 89999999999999999755432
Q ss_pred CCCCeeeeeecCCCeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEE
Q 011711 140 DSGSKRTLERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLW 219 (479)
Q Consensus 140 ~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vw 219 (479)
....+..|.....|..+....+++|+.|+.|++||+.++ +.+..+.+|...|.+++|+ +.+|++|+.||+|++|
T Consensus 165 ---~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vw 238 (435)
T 1p22_A 165 ---CKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG-EMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVW 238 (435)
T ss_dssp ---EEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSC-CEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEE
T ss_pred ---EEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCC-cEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEE
Confidence 123444566678888888889999999999999999998 7899999999999999997 4599999999999999
Q ss_pred ECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEcc
Q 011711 220 DCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGI 299 (479)
Q Consensus 220 d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~ 299 (479)
|+.+++..... ....+|...|.++.+.++.+++|+.||.|++||+.
T Consensus 239 d~~~~~~~~~~----------------------------------~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 284 (435)
T 1p22_A 239 DMASPTDITLR----------------------------------RVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS 284 (435)
T ss_dssp ECSSSSCCEEE----------------------------------EEECCCSSCEEEEEEETTEEEEEETTSEEEEEETT
T ss_pred eCCCCCCceee----------------------------------eEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 99887654221 23456888999999988899999999999999998
Q ss_pred CCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCCEEEEEeCCCeEE
Q 011711 300 PNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIK 379 (479)
Q Consensus 300 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~ 379 (479)
++. ....+.+|...|.++.++++++++|+.||.|++||+++++++.++.+|...|.++.+++.+|++++.||.|+
T Consensus 285 ~~~-----~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~ 359 (435)
T 1p22_A 285 TCE-----FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIK 359 (435)
T ss_dssp TCC-----EEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEE
T ss_pred cCc-----EEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEE
Confidence 764 467788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCc---------ceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEE
Q 011711 380 VWIMTEEG---------NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIET 450 (479)
Q Consensus 380 iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~ 450 (479)
+||+.+.. .+..+..|...+..+.+ ++. .|++++.||.|++||+.+...........+..++.|
T Consensus 360 vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~------~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 432 (435)
T 1p22_A 360 VWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF------DEF-QIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTY 432 (435)
T ss_dssp EEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE------CSS-CEEECCSSSEEEEEC---------------------
T ss_pred EEECCCCCCccccccchheeeccCCCCCeEEEEe------CCC-EEEEEeCCCEEEEEECCCCCCcccCCCCCCccceee
Confidence 99997655 56677777777666655 444 688999999999999988776666555556666665
Q ss_pred CC
Q 011711 451 GP 452 (479)
Q Consensus 451 s~ 452 (479)
.+
T Consensus 433 ~~ 434 (435)
T 1p22_A 433 IS 434 (435)
T ss_dssp --
T ss_pred ec
Confidence 43
No 42
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7.1e-35 Score=310.95 Aligned_cols=354 Identities=18% Similarity=0.207 Sum_probs=276.6
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCC--CeEEEeccCC
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP--KNVCYHWLSG 162 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~~~ 162 (479)
.+.+|...|.+++|+|+|.++|+|+.||+|+||+..+... ...+..+.. ..+++.+.+.
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~-------------------~~~~~~~~~~v~~~~~s~~~~ 68 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE-------------------VRSIQVTETPVRAGKFIARKN 68 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-------------------EEEEECCSSCEEEEEEEGGGT
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce-------------------EEEEecCCCcEEEEEEeCCCC
Confidence 4678999999999999999999999999999998654321 122223333 3455666777
Q ss_pred eeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCC-ceEEEEe-cCCceeEEE
Q 011711 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG-QSASVIN-LGAEVGSLI 240 (479)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~-~~~~~~~-~~~~~~~~~ 240 (479)
.+++|+.|+.|++||+.++ +.+..+.+|.+.|++++|+|++++|++++.||+|++||+.++ .....+. +...+.++.
T Consensus 69 ~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~ 147 (814)
T 3mkq_A 69 WIIVGSDDFRIRVFNYNTG-EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147 (814)
T ss_dssp EEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEE
T ss_pred EEEEEeCCCeEEEEECCCC-cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEE
Confidence 8999999999999999988 788899999999999999999999999999999999999987 5555555 344566665
Q ss_pred e---CCCEEE-EEcCCeEEEEEcCCCceE-Eec-CCCccEEEEEEcC--C--EEEEEeCCCcEEEEEccCCCCCccccee
Q 011711 241 C---EGPWVF-VGMPNVVKAWHIESSAEF-SLD-GPVGEVYSMVVAN--E--MLFAGAQDGNILVWKGIPNTQNPFQLAA 310 (479)
Q Consensus 241 ~---~~~~l~-~~~~~~i~v~~~~~~~~~-~~~-~~~~~v~~~~~~~--~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 310 (479)
+ ++..++ ++.++.|++||+.++... ... .+...+.+++|++ + .+++++.||.|++||+.++. ...
T Consensus 148 ~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-----~~~ 222 (814)
T 3mkq_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-----CVA 222 (814)
T ss_dssp EETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE-----EEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----EEE
Confidence 4 445555 458899999999876643 333 3448899999986 4 99999999999999997753 467
Q ss_pred eecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcC--C-EEEEEeCCCeEEEEEcCC
Q 011711 311 LLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD--Q-YLLSCSLDNTIKVWIMTE 385 (479)
Q Consensus 311 ~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~i~iwd~~~ 385 (479)
.+.+|...|.+++|+ ++++++++.||.|++||+.+++.+..+..|...+.++.+.+ . .+++++.++.+.+|++..
T Consensus 223 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence 788999999999997 78999999999999999999999999999999999999883 2 235555577789998765
Q ss_pred CcceEEecc-------------------------------------------ccCccceEEEeeeeCCCCCcEEEEEeCC
Q 011711 386 EGNLEVAYT-------------------------------------------HNEDHGVLALGGLNDPDGNPVLICSCND 422 (479)
Q Consensus 386 ~~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~~l~s~~~d 422 (479)
......+.. +...+. .+.++|+|+ ++++++ |
T Consensus 303 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~spdg~-~la~~~-~ 376 (814)
T 3mkq_A 303 DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQ----SLAHSPNGR-FVTVVG-D 376 (814)
T ss_dssp CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCS----EEEECTTSS-EEEEEE-T
T ss_pred CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCc----eeEECCCCC-EEEEec-C
Confidence 433222110 111122 234579998 677776 8
Q ss_pred CeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcCCCcEEEEEeccC
Q 011711 423 DSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 423 g~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~ 473 (479)
+.+.+|++..... .+.+.+.+++|+|++ .|++++.+|.|++|+...+
T Consensus 377 ~~~~i~~~~~~~~----~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~ 424 (814)
T 3mkq_A 377 GEYVIYTALAWRN----KAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKE 424 (814)
T ss_dssp TEEEEEETTTTEE----EEEEECSEEEECTTSSCEEEECTTCCEEEEETTEE
T ss_pred CEEEEEECccccc----cCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCC
Confidence 9999999865432 234678899999999 8999999999999975443
No 43
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.3e-34 Score=282.61 Aligned_cols=286 Identities=11% Similarity=0.061 Sum_probs=240.6
Q ss_pred eeeeecCCCeEEEeccCCeeEeCCCCCeEEEeecCCCc-----eeeEEEecccccEEEEEeCCC----C---CEEEEEeC
Q 011711 145 RTLERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGF-----TMLAKLEGHKKAVSGIALPLR----S---DKLYSGSR 212 (479)
Q Consensus 145 ~~~~~~~~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~-----~~~~~~~~H~~~V~~l~~s~~----~---~~l~s~s~ 212 (479)
..+.+|.....|..|....+++|+.|+.|++|++.++. +.+..+.+|...|++++|+|+ + ++|++++.
T Consensus 10 ~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~ 89 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF 89 (397)
T ss_dssp EESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred hhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcC
Confidence 34456677788888888999999999999999998872 378889999999999999999 9 99999999
Q ss_pred CCcEEEEECCCCce-----EEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCC-----CccEEEEEEc--
Q 011711 213 DGTVQLWDCHTGQS-----ASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGP-----VGEVYSMVVA-- 280 (479)
Q Consensus 213 Dg~v~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~-----~~~v~~~~~~-- 280 (479)
|+.|++||+.+++. ... +..| ...|.+++|+
T Consensus 90 dg~i~iw~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~v~~~~~~~~ 132 (397)
T 1sq9_A 90 SGDLLFYRITREDETKKVIFEK-------------------------------------LDLLDSDMKKHSFWALKWGAS 132 (397)
T ss_dssp TSCEEEEEEEECTTTCCEEEEE-------------------------------------ECCSCTTGGGSCEEEEEEECC
T ss_pred CCCEEEEEccCCccccccccee-------------------------------------ecccccccCCCcEEEEEEeec
Confidence 99999999887764 322 2344 5889999999
Q ss_pred --CC--E-EEEEeCCCcEEEEEccC------CCCCcccceeee-------cCCCCCeEEEEEc--CCEEEEEeCCCeEEE
Q 011711 281 --NE--M-LFAGAQDGNILVWKGIP------NTQNPFQLAALL-------KGHTRPVTCLAVG--GKRLYSGSMDNTIRV 340 (479)
Q Consensus 281 --~~--~-l~~g~~dg~i~iwd~~~------~~~~~~~~~~~~-------~~h~~~i~~l~~~--~~~l~sgs~dg~I~i 340 (479)
++ . |++++.||.|++||+.. .....+.....+ ..|...|.+++|+ + ++++++.||.|++
T Consensus 133 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i 211 (397)
T 1sq9_A 133 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQI 211 (397)
T ss_dssp C----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEE
T ss_pred cCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEE
Confidence 66 7 99999999999999987 443222222244 4589999999997 6 9999999999999
Q ss_pred EECCCCcEEEEEeC---C---CCCcEEEEEc--CCEEEEEeCC---CeEEEEEcCCCcceEEecc-------------cc
Q 011711 341 WDLDTLEAVMTLNG---H---TDAPMSLLCW--DQYLLSCSLD---NTIKVWIMTEEGNLEVAYT-------------HN 396 (479)
Q Consensus 341 wd~~~~~~~~~~~~---h---~~~v~~~~~~--~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~-------------~~ 396 (479)
||+++++.+..+.. | ...+.++.++ +++|++++.| +.|++||+++.+.+..+.. +.
T Consensus 212 ~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (397)
T 1sq9_A 212 SELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 291 (397)
T ss_dssp EETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBS
T ss_pred EECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccC
Confidence 99999999999999 9 9999999997 7899999999 9999999999888887776 66
Q ss_pred CccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-------c---------------cCceEEEEECCCc
Q 011711 397 EDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-------S---------------RREVRVIETGPDG 454 (479)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-------~---------------~~~v~~l~~s~~g 454 (479)
..+..+.+ +|+++ +|++++.|+.|++||+.+++.+..+. + ...|.+++|+|++
T Consensus 292 ~~v~~~~~----~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g 366 (397)
T 1sq9_A 292 SWVMSLSF----NDSGE-TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG 366 (397)
T ss_dssp SCEEEEEE----CSSSS-EEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred CcEEEEEE----CCCCC-EEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence 65555554 58888 88999999999999999999888887 3 6889999999995
Q ss_pred -----------eEEEEcCCCcEEEEEeccC
Q 011711 455 -----------LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 455 -----------~l~sg~~dg~v~vw~~~~~ 473 (479)
+|++++.||.|++|++.++
T Consensus 367 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 367 WRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccccccccceEEEecCCCcEEEEEcCCC
Confidence 8999999999999999875
No 44
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4e-34 Score=281.61 Aligned_cols=272 Identities=21% Similarity=0.317 Sum_probs=226.9
Q ss_pred EEEeccCCeeEeCCCCCeEEEeecCCCceeeEEE--ecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 011711 155 VCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKL--EGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (479)
Q Consensus 155 ~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~--~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~ 232 (479)
-+.+|....+++.+.|++|+|||..++ +.+..+ .+|...|++|+|+|+|++|++|+.||+|++||+++++.+..+
T Consensus 109 ~~l~wS~~n~lAvgld~tV~lWd~~tg-~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~-- 185 (420)
T 4gga_A 109 NLVDWSSGNVLAVALDNSVYLWSASSG-DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-- 185 (420)
T ss_dssp BCEEECTTSEEEEEETTEEEEEETTTC-CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--
T ss_pred eeEEECCCCEEEEEeCCEEEEEECCCC-CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE--
Confidence 356676666666667999999999998 656555 467889999999999999999999999999999998877554
Q ss_pred CCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeee
Q 011711 233 GAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALL 312 (479)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 312 (479)
.+|...+.++.+++..+++|+.|+.+++||..... .....+
T Consensus 186 -----------------------------------~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~----~~~~~~ 226 (420)
T 4gga_A 186 -----------------------------------TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE----HHVATL 226 (420)
T ss_dssp -----------------------------------CCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS----CEEEEE
T ss_pred -----------------------------------eCCCCceEEEeeCCCEEEEEeCCCceeEeeecccc----eeeEEe
Confidence 36888899999999999999999999999987764 346778
Q ss_pred cCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCc----EEEEEeCCCCCcEEEEEc---CCEEEEE--eCCCeEEEE
Q 011711 313 KGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLE----AVMTLNGHTDAPMSLLCW---DQYLLSC--SLDNTIKVW 381 (479)
Q Consensus 313 ~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~----~~~~~~~h~~~v~~~~~~---~~~l~s~--s~dg~i~iw 381 (479)
.+|...+..+.++ +.++++++.|+.|++||..+++ .+.....|...|.++.+. +..++++ +.|++|++|
T Consensus 227 ~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iw 306 (420)
T 4gga_A 227 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 306 (420)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEE
T ss_pred cccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEE
Confidence 8999999999996 8999999999999999998765 356778899999999987 4566654 579999999
Q ss_pred EcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEE-eCCCeEEEeecCCCceeeeee-ccCceEEEEECCCc-eEEE
Q 011711 382 IMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICS-CNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDG-LFFT 458 (479)
Q Consensus 382 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~s 458 (479)
|+.++.....+..+.. +. ...++|+++.+++++ +.|+.|+|||+.+++.+..+. |.+.|.+++|+||| +|+|
T Consensus 307 d~~t~~~~~~~~~~~~-v~----~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S 381 (420)
T 4gga_A 307 NVCSGACLSAVDAHSQ-VC----SILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 381 (420)
T ss_dssp ETTTTEEEEEEECSSC-EE----EEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred eCCccccceeeccccc-ee----eeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 9999887776665433 22 333458888555443 379999999999999998887 57899999999999 9999
Q ss_pred EcCCCcEEEEEeccC
Q 011711 459 GDGTGMLSVWKILAK 473 (479)
Q Consensus 459 g~~dg~v~vw~~~~~ 473 (479)
|+.||+|+|||+.+.
T Consensus 382 ~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 382 AAADETLRLWRCFEL 396 (420)
T ss_dssp EETTTEEEEECCSCS
T ss_pred EecCCeEEEEECCCC
Confidence 999999999998753
No 45
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.5e-36 Score=298.76 Aligned_cols=270 Identities=17% Similarity=0.202 Sum_probs=200.9
Q ss_pred eeEeCCCCCeEEEeecCCCc-eeeEEEecccccEEEEEeCC-CCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEE
Q 011711 163 NCVKGDECRFWHSWFCGEGF-TMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI 240 (479)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~-~~~~~~~~H~~~V~~l~~s~-~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 240 (479)
.+++|+.||.|+|||+.++. .....+.+|.+.|++|+|+| ++++|+||+.||+|++||++++.......
T Consensus 134 ~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--------- 204 (435)
T 4e54_B 134 TVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFAS--------- 204 (435)
T ss_dssp CEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEEC---------
T ss_pred EEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEec---------
Confidence 45566666666666665441 33455678999999999998 68999999999999999997654322211
Q ss_pred eCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCC
Q 011711 241 CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (479)
Q Consensus 241 ~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~ 318 (479)
...+...+.+++++++ +|++|+.||.|++||+... .+..+.+|...
T Consensus 205 --------------------------~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~------~~~~~~~h~~~ 252 (435)
T 4e54_B 205 --------------------------SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK------ELWNLRMHKKK 252 (435)
T ss_dssp --------------------------CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC------BCCCSBCCSSC
T ss_pred --------------------------cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc------eeEEEecccce
Confidence 1223445678888877 9999999999999998653 25567899999
Q ss_pred eEEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEE---EeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceE
Q 011711 319 VTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMT---LNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLE 390 (479)
Q Consensus 319 i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~---~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~ 390 (479)
|.+++|+ ..++++|+.|+.|++||+++.+.... ..+|...|.++.++ +++|++++.||.|++||+.+.....
T Consensus 253 v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~ 332 (435)
T 4e54_B 253 VTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPL 332 (435)
T ss_dssp EEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEE
T ss_pred EEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccce
Confidence 9999996 45789999999999999988765433 35789999999887 7899999999999999999988777
Q ss_pred EeccccCcc--ceEEEeeeeCCCCCcEEEEE------------eCCCeEEEeecCCCceeeeee--ccCceEEE-EECCC
Q 011711 391 VAYTHNEDH--GVLALGGLNDPDGNPVLICS------------CNDDSVHLYELPSFMERGRIF--SRREVRVI-ETGPD 453 (479)
Q Consensus 391 ~~~~~~~~~--~~~~~~~~~~~~~~~~l~s~------------~~dg~v~iwd~~~~~~~~~~~--~~~~v~~l-~~s~~ 453 (479)
.+..+.... ....+...++|++. +++++ ..++.|++||..+++.+..+. +...|.++ +|+|+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspd 411 (435)
T 4e54_B 333 GLIPHPHRHFQHLTPIKAAWHPRYN-LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPM 411 (435)
T ss_dssp EECCCCCCCCSSSCCCBCEECSSSS-CEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTT
T ss_pred EEecccccccccceeEEEEEcCCCC-EEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCC
Confidence 666554321 11122333455555 33333 244689999999999888775 46677777 69999
Q ss_pred c-eEEEEcCCCcEEEEEeccCCC
Q 011711 454 G-LFFTGDGTGMLSVWKILAKPN 475 (479)
Q Consensus 454 g-~l~sg~~dg~v~vw~~~~~~~ 475 (479)
| +|++|+ |+.|+||++++++.
T Consensus 412 g~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 412 GDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp SSCEEEEC-SSEEEECCCC----
T ss_pred CCEEEEEc-CCcEEEEECCcCee
Confidence 9 777765 88999999988654
No 46
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.4e-34 Score=300.28 Aligned_cols=282 Identities=21% Similarity=0.303 Sum_probs=229.8
Q ss_pred eeeeecCCCeEEEeccC---CeeEeCCCCCeEEEeecCCC----ceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEE
Q 011711 145 RTLERTTPKNVCYHWLS---GNCVKGDECRFWHSWFCGEG----FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQ 217 (479)
Q Consensus 145 ~~~~~~~~~~~c~~~~~---~~~~~g~~d~~i~vw~~~~~----~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~ 217 (479)
..+..|...+.|..+.. ..+++|+.|++|++|++.+. ......+.+|...|.+++|+|++++|+||+.|++|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 45778888877776653 46899999999999999753 145678999999999999999999999999999999
Q ss_pred EEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEE
Q 011711 218 LWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILV 295 (479)
Q Consensus 218 vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~i 295 (479)
|||+.+++....+ .+|...|.+++|+++ .|++|+.|+.|++
T Consensus 456 vwd~~~~~~~~~~-------------------------------------~~h~~~v~~~~~s~~~~~l~s~s~D~~i~i 498 (694)
T 3dm0_A 456 LWDLAAGVSTRRF-------------------------------------VGHTKDVLSVAFSLDNRQIVSASRDRTIKL 498 (694)
T ss_dssp EEETTTTEEEEEE-------------------------------------ECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred EEECCCCcceeEE-------------------------------------eCCCCCEEEEEEeCCCCEEEEEeCCCEEEE
Confidence 9999988766543 368899999999987 8999999999999
Q ss_pred EEccCCCCCcccceeeecCCCCCeEEEEEc----CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEE
Q 011711 296 WKGIPNTQNPFQLAALLKGHTRPVTCLAVG----GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYL 369 (479)
Q Consensus 296 wd~~~~~~~~~~~~~~~~~h~~~i~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l 369 (479)
||...... ........+|...|.+++|+ ...+++++.|++|++||++++++...+.+|...|.++.++ +++|
T Consensus 499 wd~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l 576 (694)
T 3dm0_A 499 WNTLGECK--YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLC 576 (694)
T ss_dssp ECTTSCEE--EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred EECCCCcc--eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEE
Confidence 99765421 12222335799999999997 2579999999999999999999999999999999999998 7899
Q ss_pred EEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeecc-------
Q 011711 370 LSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSR------- 442 (479)
Q Consensus 370 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~------- 442 (479)
++++.||.|++||+.+++.+..+.. ...+. ++.++|++. +++++ .++.|++||+.+++.+..+...
T Consensus 577 ~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~----~~~~sp~~~-~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 649 (694)
T 3dm0_A 577 ASGGKDGVVLLWDLAEGKKLYSLEA-NSVIH----ALCFSPNRY-WLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEK 649 (694)
T ss_dssp EEEETTSBCEEEETTTTEEEECCBC-SSCEE----EEEECSSSS-EEEEE-ETTEEEEEETTTTEEEEEECCCCC-----
T ss_pred EEEeCCCeEEEEECCCCceEEEecC-CCcEE----EEEEcCCCc-EEEEE-cCCCEEEEECCCCCChhhhcccccccccc
Confidence 9999999999999998876554433 22333 334568887 66655 4677999999998877655320
Q ss_pred -------------CceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 443 -------------REVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 443 -------------~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
..+++++|+|+| +|++|+.||.|++|++..
T Consensus 650 ~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 650 ADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp -----------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred ccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 137899999999 999999999999999853
No 47
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7e-34 Score=278.15 Aligned_cols=274 Identities=19% Similarity=0.279 Sum_probs=230.2
Q ss_pred eEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEec-ccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 011711 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEG-HKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (479)
Q Consensus 154 ~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~-H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~ 232 (479)
..++.|....+++++.|+.|++|++.++ +....+.. |...|++++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-- 172 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSG-SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM-- 172 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTC-CEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE--
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCC-cEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe--
Confidence 4567777788999999999999999988 55555555 8999999999999999999999999999999988766544
Q ss_pred CCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeee
Q 011711 233 GAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALL 312 (479)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 312 (479)
..|...|.++.|+++.+++|+.||.|++||+.... .....+
T Consensus 173 -----------------------------------~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~ 213 (401)
T 4aez_A 173 -----------------------------------AGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN----HQIGTL 213 (401)
T ss_dssp -----------------------------------CCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS----CEEEEE
T ss_pred -----------------------------------cCCCCceEEEEECCCEEEEEcCCCCEEEEecccCc----ceeeEE
Confidence 35888999999999999999999999999998543 246778
Q ss_pred cCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc---CCEEEEEe--CCCeEEEEEcCC
Q 011711 313 KGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW---DQYLLSCS--LDNTIKVWIMTE 385 (479)
Q Consensus 313 ~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s--~dg~i~iwd~~~ 385 (479)
.+|...|.+++|+ +++|++|+.||.|++||+++++.+..+..|...|.++.+. ..++++++ .|+.|++||+.+
T Consensus 214 ~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~ 293 (401)
T 4aez_A 214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT 293 (401)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT
T ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC
Confidence 8999999999996 8899999999999999999999999999999999999998 35777765 799999999998
Q ss_pred CcceEEeccccCccceEEEeeeeCCCCCcEEEE--EeCCCeEEEeecCCCceeeee---eccCceEEEEECCCc-eEEEE
Q 011711 386 EGNLEVAYTHNEDHGVLALGGLNDPDGNPVLIC--SCNDDSVHLYELPSFMERGRI---FSRREVRVIETGPDG-LFFTG 459 (479)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s--~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~l~~s~~g-~l~sg 459 (479)
+..+..+. +...+..+ .++|+++ .+++ |+.|+.|++||+.+++..... .|...|.+++|+|++ +|+++
T Consensus 294 ~~~~~~~~-~~~~v~~~----~~s~~~~-~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 367 (401)
T 4aez_A 294 GARVNTVD-AGSQVTSL----IWSPHSK-EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTA 367 (401)
T ss_dssp CCEEEEEE-CSSCEEEE----EECSSSS-EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEE
T ss_pred CCEEEEEe-CCCcEEEE----EECCCCC-eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEE
Confidence 87776664 33344333 4469998 5555 448999999999986555443 257889999999999 99999
Q ss_pred cCCCcEEEEEeccCCC
Q 011711 460 DGTGMLSVWKILAKPN 475 (479)
Q Consensus 460 ~~dg~v~vw~~~~~~~ 475 (479)
+.||.|++|++.+++.
T Consensus 368 ~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 368 ASDENLKFWRVYDGDH 383 (401)
T ss_dssp CTTSEEEEEECCC---
T ss_pred eCCCcEEEEECCCCcc
Confidence 9999999999987653
No 48
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-33 Score=261.90 Aligned_cols=283 Identities=22% Similarity=0.329 Sum_probs=239.3
Q ss_pred ecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec-CCceeEEE--eCCCEEEE-EcCC
Q 011711 177 FCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL-GAEVGSLI--CEGPWVFV-GMPN 252 (479)
Q Consensus 177 ~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~-~~~~~~~~--~~~~~l~~-~~~~ 252 (479)
|..++.++++.+.+|.+.|++++| +++++|++++.||.|++||+.+++....+.. ...+.++. +++.++++ +.++
T Consensus 3 d~~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 81 (313)
T 3odt_A 3 DPFTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDT 81 (313)
T ss_dssp --CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTS
T ss_pred CccccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCC
Confidence 455667889999999999999999 9999999999999999999999887777764 44555554 46777765 4889
Q ss_pred eEEEEEcCCCc----eEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEE---c
Q 011711 253 VVKAWHIESSA----EFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV---G 325 (479)
Q Consensus 253 ~i~v~~~~~~~----~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~---~ 325 (479)
.+++|++.... ...+..|...|.++.++++.+++++.||.|++|| . .+....+..|..++.++.+ +
T Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~-----~~~~~~~~~~~~~v~~~~~~~~~ 154 (313)
T 3odt_A 82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--E-----GSLVYNLQAHNASVWDAKVVSFS 154 (313)
T ss_dssp CEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--T-----TEEEEEEECCSSCEEEEEEEETT
T ss_pred eEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--C-----CcEEEecccCCCceeEEEEccCC
Confidence 99999987654 3467789999999999888999999999999999 2 2346778889999999998 3
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEeC-CCCCcEEEEEc-CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEE
Q 011711 326 GKRLYSGSMDNTIRVWDLDTLEAVMTLNG-HTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLA 403 (479)
Q Consensus 326 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-h~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 403 (479)
++++++++.||.|++|| ..+.+..+.. |...+.++.+. +..+++++.||.|++||+++.+.+..+..|...+..+.
T Consensus 155 ~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 232 (313)
T 3odt_A 155 ENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIK 232 (313)
T ss_dssp TTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred CCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEE
Confidence 89999999999999999 5567778877 88899999987 45599999999999999999988888887877766665
Q ss_pred EeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec-cCceEEEEECCCceEEEEcCCCcEEEEEeccCCC
Q 011711 404 LGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS-RREVRVIETGPDGLFFTGDGTGMLSVWKILAKPN 475 (479)
Q Consensus 404 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~~~~ 475 (479)
+ +|++. +++++.|+.|++||+.+++....+.. ...|.+++|+|++.+++++.||.|++|++.+++.
T Consensus 233 ~----~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 233 L----LPNGD--IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp E----CTTSC--EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGGC
T ss_pred E----ecCCC--EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCce
Confidence 5 58884 77888999999999999998888765 6689999999999777899999999999987643
No 49
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=8e-35 Score=280.30 Aligned_cols=275 Identities=14% Similarity=0.177 Sum_probs=223.5
Q ss_pred ecCCCeEEEecc------CCeeEeCCCCCeEEEeecCCCceeeEEEec-----ccccEEEEEeCCC----CCEEEEEeCC
Q 011711 149 RTTPKNVCYHWL------SGNCVKGDECRFWHSWFCGEGFTMLAKLEG-----HKKAVSGIALPLR----SDKLYSGSRD 213 (479)
Q Consensus 149 ~~~~~~~c~~~~------~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~-----H~~~V~~l~~s~~----~~~l~s~s~D 213 (479)
+|.....|..+. ...+++++.++.|++|++.++ +.+..+.. |...|++++|+|+ +++|++++.|
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 94 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ-GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR 94 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG-GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC-cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC
Confidence 455555555554 345777777889999999877 55555654 5578999999998 6799999999
Q ss_pred CcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcC-C--EEEEEeCC
Q 011711 214 GTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN-E--MLFAGAQD 290 (479)
Q Consensus 214 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~-~--~l~~g~~d 290 (479)
|.|++||+.+++.+..+ .+|...|.+++|++ + +|++|+.|
T Consensus 95 g~i~v~d~~~~~~~~~~-------------------------------------~~~~~~i~~~~~~~~~~~~l~s~~~d 137 (366)
T 3k26_A 95 GIIRIINPITMQCIKHY-------------------------------------VGHGNAINELKFHPRDPNLLLSVSKD 137 (366)
T ss_dssp CEEEEECTTTCCEEEEE-------------------------------------ESCCSCEEEEEECSSCTTEEEEEETT
T ss_pred CEEEEEEchhceEeeee-------------------------------------cCCCCcEEEEEECCCCCCEEEEEeCC
Confidence 99999999988776544 35888999999988 4 99999999
Q ss_pred CcEEEEEccCCCCCcccceeee---cCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEE-------------
Q 011711 291 GNILVWKGIPNTQNPFQLAALL---KGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTL------------- 352 (479)
Q Consensus 291 g~i~iwd~~~~~~~~~~~~~~~---~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~------------- 352 (479)
|.|++||+.++. ....+ ..|...|.+++|+ +++|++++.||.|++||+++++.+..+
T Consensus 138 g~i~iwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 212 (366)
T 3k26_A 138 HALRLWNIQTDT-----LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNR 212 (366)
T ss_dssp SCEEEEETTTTE-----EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSS
T ss_pred CeEEEEEeecCe-----EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcc
Confidence 999999998764 24444 7899999999997 889999999999999999987654333
Q ss_pred ---------------eCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcc--------------eEEeccccCccceEE
Q 011711 353 ---------------NGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGN--------------LEVAYTHNEDHGVLA 403 (479)
Q Consensus 353 ---------------~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~~~~ 403 (479)
..|...|.++.+.++++++++.|+.|++||+.+... +..+..+...+..+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 292 (366)
T 3k26_A 213 PFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMR 292 (366)
T ss_dssp CCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCC
T ss_pred cccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEE
Confidence 349999999999999999999999999999987654 445555555555555
Q ss_pred EeeeeCCC--CCcEEEEEeCCCeEEEeecCCCceee----eeec---cCceEEEEECCCc-eEEEEcCCCcEEEEEec
Q 011711 404 LGGLNDPD--GNPVLICSCNDDSVHLYELPSFMERG----RIFS---RREVRVIETGPDG-LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 404 ~~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~---~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~ 471 (479)
+ +|+ ++ +|++++.||.|++||+.+++... .+.. ...|.+++|+|++ +|++++.||.|++||+.
T Consensus 293 ~----s~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 293 F----SMDFWQK-MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp C----EECTTSS-EEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred E----cCCCCCc-EEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 5 366 77 89999999999999999876543 3333 5889999999999 99999999999999985
No 50
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7e-34 Score=276.24 Aligned_cols=286 Identities=15% Similarity=0.152 Sum_probs=230.5
Q ss_pred EeecCCCceeeEEEecccccEEEEEeCCCC-CEEEEEeCCCcEEEEECCCCceEEEEe---cCCceeEEEe---CCCEEE
Q 011711 175 SWFCGEGFTMLAKLEGHKKAVSGIALPLRS-DKLYSGSRDGTVQLWDCHTGQSASVIN---LGAEVGSLIC---EGPWVF 247 (479)
Q Consensus 175 vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~-~~l~s~s~Dg~v~vwd~~~~~~~~~~~---~~~~~~~~~~---~~~~l~ 247 (479)
+|+.... +....+.+|...|++++|+|++ ++|++|+.||.|++||+.+++....+. +...+.++.+ ++.+++
T Consensus 57 ~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 57 IRSLKSY-KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHTTC-EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred ccccccc-ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 3444433 7788899999999999999999 999999999999999999998888776 4566777665 345555
Q ss_pred E-EcCCeEEEEEcCCCceEEecC---CCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEE
Q 011711 248 V-GMPNVVKAWHIESSAEFSLDG---PVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (479)
Q Consensus 248 ~-~~~~~i~v~~~~~~~~~~~~~---~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~ 321 (479)
+ +.|+.|++||+.+.....+.. +...|.+++|+++ .|++|+.||.|++||+.. +....+.+|...|.+
T Consensus 136 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~h~~~v~~ 209 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG------HEIFKEKLHKAKVTH 209 (383)
T ss_dssp EEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS------CEEEEEECSSSCEEE
T ss_pred EEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC------CEEEEeccCCCcEEE
Confidence 4 588999999999866655544 3478999999987 999999999999999842 246778899999999
Q ss_pred EEEc--CC-EEEEEeCCCeEEEEECCC----CcEEEEEeCCCCCcEEEEEc---CCEEEEEeCCCeEEEEEcCCCcceEE
Q 011711 322 LAVG--GK-RLYSGSMDNTIRVWDLDT----LEAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEV 391 (479)
Q Consensus 322 l~~~--~~-~l~sgs~dg~I~iwd~~~----~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~ 391 (479)
++|+ +. ++++++.|+.|++||+++ ++++..+ .|...|.++.++ +++|++++.|+.|++||+++......
T Consensus 210 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 288 (383)
T 3ei3_B 210 AEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQ 288 (383)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSE
T ss_pred EEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccc
Confidence 9997 55 899999999999999998 6677777 699999999986 48999999999999999998877666
Q ss_pred eccccCc-------cce------EEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec---cCceEEEEECCCc-
Q 011711 392 AYTHNED-------HGV------LALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS---RREVRVIETGPDG- 454 (479)
Q Consensus 392 ~~~~~~~-------~~~------~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~v~~l~~s~~g- 454 (479)
+..+... +.. ..+...++|+++. +++.|+.|++||+.+++.+..+.. ...+..++|+|++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~---s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~ 365 (383)
T 3ei3_B 289 IIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL---LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGD 365 (383)
T ss_dssp EEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT---CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSS
T ss_pred cccccccccccccceEEeccCCCCceEEEecCCccc---ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCcc
Confidence 6544321 110 1112334566663 677999999999999999888873 5667788999999
Q ss_pred eEEEEcCCCcEEEEEecc
Q 011711 455 LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 455 ~l~sg~~dg~v~vw~~~~ 472 (479)
+|++|+ ||.|++|++++
T Consensus 366 ~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 366 VLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEEEE-TTEEEEEECC-
T ss_pred EEEEec-CCcEEEEecCC
Confidence 888886 99999999875
No 51
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.7e-34 Score=269.50 Aligned_cols=246 Identities=17% Similarity=0.296 Sum_probs=214.6
Q ss_pred eeEEEecccccEEEEEeCCC----CCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEc
Q 011711 184 MLAKLEGHKKAVSGIALPLR----SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHI 259 (479)
Q Consensus 184 ~~~~~~~H~~~V~~l~~s~~----~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~ 259 (479)
+.+.+++|.+.|.+++|+|+ +.+|+||+.|++|+|||+.+++....
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~------------------------------ 73 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ------------------------------ 73 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE------------------------------
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee------------------------------
Confidence 44567799999999999874 67999999999999999876543221
Q ss_pred CCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCC
Q 011711 260 ESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMD 335 (479)
Q Consensus 260 ~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~d 335 (479)
..+.+|...|.+++++++ .+++++.|+.|++||+.++. ....+..|...+.+++|+ +++|++|+.|
T Consensus 74 -----~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~-----~~~~~~~~~~~~~~~~~spdg~~l~~g~~d 143 (321)
T 3ow8_A 74 -----WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK-----QIKSIDAGPVDAWTLAFSPDSQYLATGTHV 143 (321)
T ss_dssp -----EEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----EEEEEECCTTCCCCEEECTTSSEEEEECTT
T ss_pred -----eeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCC-----EEEEEeCCCccEEEEEECCCCCEEEEEcCC
Confidence 235679999999999987 89999999999999998764 366778888899999996 8999999999
Q ss_pred CeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCC
Q 011711 336 NTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGN 413 (479)
Q Consensus 336 g~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (479)
|.|++||+++++....+..|...+.++.++ +++|++++.||.|++||+++++.+..+..|...+..+.+ +|+++
T Consensus 144 g~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~----spd~~ 219 (321)
T 3ow8_A 144 GKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTF----SPDSQ 219 (321)
T ss_dssp SEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEE----CTTSC
T ss_pred CcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEE----cCCCC
Confidence 999999999999999999999999999987 789999999999999999999888888888888777776 59988
Q ss_pred cEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 414 PVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 414 ~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
+|++++.|+.|++||+++++....+. |...|.+++|+|++ +|++++.||.|++||+.++.
T Consensus 220 -~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~ 281 (321)
T 3ow8_A 220 -LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT 281 (321)
T ss_dssp -EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred -EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE
Confidence 89999999999999999988887776 47789999999999 99999999999999997653
No 52
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-32 Score=263.63 Aligned_cols=285 Identities=15% Similarity=0.201 Sum_probs=240.5
Q ss_pred eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec-CCceeEEEe--CCCEEEE-EcCCeEEEEE
Q 011711 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL-GAEVGSLIC--EGPWVFV-GMPNVVKAWH 258 (479)
Q Consensus 183 ~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~--~~~~l~~-~~~~~i~v~~ 258 (479)
.....+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+.. ...+.++.+ +++++++ +.++.|++||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 44567899999999999999999999999999999999999999988874 455666664 5766665 5889999999
Q ss_pred cCCCceEEecCCCccEEEEEEcCC--EEEEEeCC-----CcEEEEEccCCCCCc------ccceeeecCCCC--CeEEEE
Q 011711 259 IESSAEFSLDGPVGEVYSMVVANE--MLFAGAQD-----GNILVWKGIPNTQNP------FQLAALLKGHTR--PVTCLA 323 (479)
Q Consensus 259 ~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~d-----g~i~iwd~~~~~~~~------~~~~~~~~~h~~--~i~~l~ 323 (479)
+.+++......+...+.++.|+++ .+++++.+ |.|.+||+....... ......+..|.. .+.+++
T Consensus 103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (369)
T 3zwl_B 103 VSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG 182 (369)
T ss_dssp TTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred CCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence 999988766668999999999988 89999988 999999998764311 112344556666 899999
Q ss_pred Ec--CCEEEEEeCCCeEEEEECCC-CcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCc
Q 011711 324 VG--GKRLYSGSMDNTIRVWDLDT-LEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNED 398 (479)
Q Consensus 324 ~~--~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 398 (479)
|+ ++++++++.||.|++||+++ .+.+..+..|...|.++.++ +++|++++.|+.|++||+++...+..+. +...
T Consensus 183 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~ 261 (369)
T 3zwl_B 183 WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCP 261 (369)
T ss_dssp ECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC
T ss_pred EcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCC
Confidence 97 88999999999999999999 78899999999999999997 7899999999999999999887766655 3444
Q ss_pred cceEEEeeeeCCCCCcEEEEEeCCC--------------eEEEeecCCCceeeeee-ccCceEEEEECCCc-eEEEEcCC
Q 011711 399 HGVLALGGLNDPDGNPVLICSCNDD--------------SVHLYELPSFMERGRIF-SRREVRVIETGPDG-LFFTGDGT 462 (479)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~s~~~dg--------------~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sg~~d 462 (479)
+..+. ++|+++ ++++++.++ .+++||..+++.+..+. |...|.+++|+|++ +|++++.|
T Consensus 262 ~~~~~----~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 336 (369)
T 3zwl_B 262 LNTAV----ITPLKE-FIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED 336 (369)
T ss_dssp EEEEE----ECSSSS-EEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred ceeEE----ecCCCc-eEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCC
Confidence 44333 469988 777777777 89999999999888876 57899999999999 99999999
Q ss_pred CcEEEEEeccC
Q 011711 463 GMLSVWKILAK 473 (479)
Q Consensus 463 g~v~vw~~~~~ 473 (479)
|.|++|++..+
T Consensus 337 g~v~iw~~~~~ 347 (369)
T 3zwl_B 337 GFIRLHHFEKS 347 (369)
T ss_dssp SEEEEEEECHH
T ss_pred CeEEEEECccc
Confidence 99999999764
No 53
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.1e-34 Score=271.60 Aligned_cols=233 Identities=17% Similarity=0.158 Sum_probs=190.6
Q ss_pred eEEEeccCCeeEeCCCCCeEEEeecCCCce---eeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 011711 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFT---MLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVI 230 (479)
Q Consensus 154 ~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~---~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~ 230 (479)
.+++.+ .+.+++|+.||+|++||+.++.. ....+.+|.+.|++++|+|++++|++|+.|++|++||+.+++.+..+
T Consensus 87 ~~~~s~-d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~ 165 (344)
T 4gqb_B 87 DLTWVG-ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY 165 (344)
T ss_dssp EEEEET-TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEEeC-CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 344444 35899999999999999988722 22345689999999999999999999999999999999998876554
Q ss_pred ecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCccc
Q 011711 231 NLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQ 307 (479)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~ 307 (479)
.+|...|.+++|+++ +|++|+.||.|++||+++++.
T Consensus 166 -------------------------------------~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~---- 204 (344)
T 4gqb_B 166 -------------------------------------RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP---- 204 (344)
T ss_dssp -------------------------------------CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC----
T ss_pred -------------------------------------cCcCCceEEEEecCCCCCceeeeccccccccccccccce----
Confidence 468899999999876 789999999999999988653
Q ss_pred ceeee--cCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--C-CEEEEEeCCCeEE
Q 011711 308 LAALL--KGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--D-QYLLSCSLDNTIK 379 (479)
Q Consensus 308 ~~~~~--~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~-~~l~s~s~dg~i~ 379 (479)
...+ ..|...+.+++|+ ++++++|+.||+|++||+++++++.++.+|...|.++.|+ + ++|++++.|++|+
T Consensus 205 -~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~ 283 (344)
T 4gqb_B 205 -ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLA 283 (344)
T ss_dssp -EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred -eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEE
Confidence 3333 4556679999996 5789999999999999999999999999999999999997 3 5799999999999
Q ss_pred EEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCc
Q 011711 380 VWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFM 434 (479)
Q Consensus 380 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 434 (479)
+||+++++. ..+..|...+..+++ +|+++.+|++++.|++|++|++++..
T Consensus 284 vwd~~~~~~-~~~~~H~~~V~~v~~----sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 284 VLDSSLSEL-FRSQAHRDFVRDATW----SPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EECTTCCEE-EEECCCSSCEEEEEE----CSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EEECCCCcE-EEEcCCCCCEEEEEE----eCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 999987764 455667766655554 69998899999999999999998754
No 54
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-35 Score=293.04 Aligned_cols=335 Identities=8% Similarity=-0.016 Sum_probs=230.3
Q ss_pred CCCCCCCCCCCCCc---------eeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEec
Q 011711 89 HKKSPPSYNCPKNN---------VRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHW 159 (479)
Q Consensus 89 h~~~i~~~~~s~~g---------~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 159 (479)
+...|.+++|+|++ .+||+|+.++.. . ...+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~------------------------~----------------~~~~ 171 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD------------------------E----------------PLNE 171 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------------------------------------
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC------------------------C----------------ccch
Confidence 45688999999987 899998865420 0 0023
Q ss_pred cCCeeEeCCCCCeEEEeecCCCce---eeEEEecccccEEEEEeCCC------CCEEEEEeCCCcEEEEECCCCceE---
Q 011711 160 LSGNCVKGDECRFWHSWFCGEGFT---MLAKLEGHKKAVSGIALPLR------SDKLYSGSRDGTVQLWDCHTGQSA--- 227 (479)
Q Consensus 160 ~~~~~~~g~~d~~i~vw~~~~~~~---~~~~~~~H~~~V~~l~~s~~------~~~l~s~s~Dg~v~vwd~~~~~~~--- 227 (479)
....+++++.|++|+||++.++.. ....+.+|.+.|.+++|+|+ +.+||+++.||+|++||+.+++..
T Consensus 172 ~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~ 251 (524)
T 2j04_B 172 HLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV 251 (524)
T ss_dssp ----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE
T ss_pred hhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc
Confidence 444678899999999999977622 13456788899999999986 579999999999999999876432
Q ss_pred --------EEEe-cCCceeEEEe-CCCEEE-EEcCCeEEEEEcCCCce--EEecCCCccEEEE--EEcC---CEEEEEeC
Q 011711 228 --------SVIN-LGAEVGSLIC-EGPWVF-VGMPNVVKAWHIESSAE--FSLDGPVGEVYSM--VVAN---EMLFAGAQ 289 (479)
Q Consensus 228 --------~~~~-~~~~~~~~~~-~~~~l~-~~~~~~i~v~~~~~~~~--~~~~~~~~~v~~~--~~~~---~~l~~g~~ 289 (479)
..+. +...+.++.+ .+..|+ ++.|++|++||++++.. ..+.+|...|.++ .+++ .+|++|+.
T Consensus 252 ~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~ 331 (524)
T 2j04_B 252 FKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV 331 (524)
T ss_dssp EECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEET
T ss_pred ceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEecc
Confidence 2332 3355666665 233444 55899999999987642 3578899999999 4555 37999999
Q ss_pred CCcEEEEEccCCCCCcccceeeecCCCC--CeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc
Q 011711 290 DGNILVWKGIPNTQNPFQLAALLKGHTR--PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW 365 (479)
Q Consensus 290 dg~i~iwd~~~~~~~~~~~~~~~~~h~~--~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~ 365 (479)
|++|++||+++.. ....+.+|.. .|.+++|+ +..+++++.|++|++||++++.++.++.+|...|.+++++
T Consensus 332 D~tvklWD~~~~~-----~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~S 406 (524)
T 2j04_B 332 DGYFYIFNPKDIA-----TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVS 406 (524)
T ss_dssp TSEEEEECGGGHH-----HHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECC
T ss_pred CCeEEEEECCCCC-----cccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeC
Confidence 9999999998743 2344555543 47889997 7789999999999999999999989999999999999998
Q ss_pred --CCEEEEEeCCCeEEEEEcCCCcceEEecccc-CccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC-CCceeeeee-
Q 011711 366 --DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHN-EDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP-SFMERGRIF- 440 (479)
Q Consensus 366 --~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~- 440 (479)
+++|++|+.||+|++||+... .+....... .........+.++|+++ ++ .... .+.+|+.. ++..+..+.
T Consensus 407 p~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~-~~-~~~~--~~~~~~~~~~g~~~~~l~g 481 (524)
T 2j04_B 407 RLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDD-KY-RIDS--SYEVYPLTVNDVSKAKIDA 481 (524)
T ss_dssp SSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSC-EE-EECC--CCCCCC-------------
T ss_pred CCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCC-eE-EccC--CceecccccCCcceeeecC
Confidence 789999999999999998653 211111000 01111234566789888 33 2222 23444433 344444444
Q ss_pred ccCceEEEEECCCc----eEEEEcCCCcEEEEEeccC
Q 011711 441 SRREVRVIETGPDG----LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 441 ~~~~v~~l~~s~~g----~l~sg~~dg~v~vw~~~~~ 473 (479)
|...|.+++|+|++ .+++|+.||.|+||++.-.
T Consensus 482 h~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 482 HGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred CCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 57899999999994 8999999999999998754
No 55
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-35 Score=286.08 Aligned_cols=282 Identities=10% Similarity=0.062 Sum_probs=212.7
Q ss_pred CCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEeC
Q 011711 88 NHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKG 167 (479)
Q Consensus 88 gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g 167 (479)
.|..+|++++|+|+|+++|+|+.||+++||+..+..
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-------------------------------------------- 44 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-------------------------------------------- 44 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE--------------------------------------------
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc--------------------------------------------
Confidence 356788999999999999999989999998533210
Q ss_pred CCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEE
Q 011711 168 DECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVF 247 (479)
Q Consensus 168 ~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (479)
.+.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++..
T Consensus 45 --------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~-------------------- 90 (377)
T 3dwl_C 45 --------------WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTW-------------------- 90 (377)
T ss_dssp --------------EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CC--------------------
T ss_pred --------------eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCce--------------------
Confidence 0345567789999999999999999999999999999999877510
Q ss_pred EEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecC-CCCCeEEEEE
Q 011711 248 VGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKG-HTRPVTCLAV 324 (479)
Q Consensus 248 ~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-h~~~i~~l~~ 324 (479)
.....+..|...|.+++|+++ .|++|+.|+.|++||+..+.. ......+.. |...|.+++|
T Consensus 91 --------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~h~~~v~~~~~ 154 (377)
T 3dwl_C 91 --------------KQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND--WWVSKHLKRPLRSTILSLDW 154 (377)
T ss_dssp --------------CCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-------CCCCEEECSSCCSCEEEEEE
T ss_pred --------------eeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc--ceeeeEeecccCCCeEEEEE
Confidence 011234568889999999987 899999999999999987643 224556666 9999999999
Q ss_pred c--CCEEEEEeCCCeEEEEECC------------------CCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEE
Q 011711 325 G--GKRLYSGSMDNTIRVWDLD------------------TLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWI 382 (479)
Q Consensus 325 ~--~~~l~sgs~dg~I~iwd~~------------------~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd 382 (479)
+ +++|++++.|+.|++||++ .++++..+ .|...|.++.++ +++|++++.||.|++||
T Consensus 155 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd 233 (377)
T 3dwl_C 155 HPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAY 233 (377)
T ss_dssp CTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred cCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 7 7899999999999999985 35566777 899999999997 78999999999999999
Q ss_pred cCCCcc----eEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCc--ee--------------------
Q 011711 383 MTEEGN----LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFM--ER-------------------- 436 (479)
Q Consensus 383 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~-------------------- 436 (479)
+.+... +..+..|...+..+.+ +|+++ +|++++.++.+ +|+..... ..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~v~~~~~----s~~~~-~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (377)
T 3dwl_C 234 PSAPEQPPRALITVKLSQLPLRSLLW----ANESA-IVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGE 307 (377)
T ss_dssp ECSTTSCEEECCCEECSSSCEEEEEE----EETTE-EEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCC
T ss_pred CCCCCCcceeeEeecCCCCceEEEEE----cCCCC-EEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccc
Confidence 999887 5566666666655555 58887 78888766655 66654211 00
Q ss_pred --------------eee-----------------eccCceEEEEECCCc-----eEEEEcCCCcEEEEEe
Q 011711 437 --------------GRI-----------------FSRREVRVIETGPDG-----LFFTGDGTGMLSVWKI 470 (479)
Q Consensus 437 --------------~~~-----------------~~~~~v~~l~~s~~g-----~l~sg~~dg~v~vw~~ 470 (479)
..+ .|.+.|+++.+.++. .|+||+.||.|++||+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 308 GREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 000 167789999987654 5999999999999985
No 56
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.5e-33 Score=262.89 Aligned_cols=271 Identities=20% Similarity=0.307 Sum_probs=220.6
Q ss_pred EEeccCCeeEeCCCCCeEEEeecCCCceeeEEEe--cccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 011711 156 CYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLE--GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG 233 (479)
Q Consensus 156 c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~--~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~ 233 (479)
|.+|..+.+++.+.|++|+|||+.++ +.++.++ +|...|++++|+|++++|++|+.||+|++||+++++.+..+.
T Consensus 30 ~l~WS~~~~lAvg~D~tV~iWd~~tg-~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~-- 106 (318)
T 4ggc_A 30 LVDWSSGNVLAVALDNSVYLWSASSG-DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT-- 106 (318)
T ss_dssp CEEECTTSEEEEEETTEEEEEETTTC-CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--
T ss_pred EEEECCCCEEEEEeCCEEEEEECCCC-CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec--
Confidence 44555555666667999999999998 6666654 678889999999999999999999999999999998776543
Q ss_pred CceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeec
Q 011711 234 AEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLK 313 (479)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 313 (479)
+|...+.++.+.+..+++|+.++.+.+|+..... .....+.
T Consensus 107 -----------------------------------~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~----~~~~~~~ 147 (318)
T 4ggc_A 107 -----------------------------------SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE----HHVATLS 147 (318)
T ss_dssp -----------------------------------CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS----CEEEEEE
T ss_pred -----------------------------------CccceEEEeecCCCEEEEEecCCceEeeecCCCc----eeEEEEc
Confidence 5777888899999999999999999999987764 3467788
Q ss_pred CCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcE----EEEEeCCCCCcEEEEEc---CCE--EEEEeCCCeEEEEE
Q 011711 314 GHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEA----VMTLNGHTDAPMSLLCW---DQY--LLSCSLDNTIKVWI 382 (479)
Q Consensus 314 ~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~----~~~~~~h~~~v~~~~~~---~~~--l~s~s~dg~i~iwd 382 (479)
+|...+.++.+. ++++++++.|+.|++||+++++. ......|...|.++.+. +.. +++++.++.|++||
T Consensus 148 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd 227 (318)
T 4ggc_A 148 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 227 (318)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEE
T ss_pred CccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEe
Confidence 999999999996 88999999999999999998653 45566788888888886 333 34667889999999
Q ss_pred cCCCcceEEeccccCccceEEEeeeeCCCCCcEEEE-EeCCCeEEEeecCCCceeeeee-ccCceEEEEECCCc-eEEEE
Q 011711 383 MTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLIC-SCNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDG-LFFTG 459 (479)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sg 459 (479)
.......... .+...+....+ +|+++.++++ ++.|+.|++||+++++.+..+. |.+.|++++|+|+| +|+||
T Consensus 228 ~~~~~~~~~~-~~~~~v~~~~~----~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~ 302 (318)
T 4ggc_A 228 VCSGACLSAV-DAHSQVCSILW----SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 302 (318)
T ss_dssp TTTCCEEEEE-ECSSCEEEEEE----ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred cccccccccc-cceeeeeeeee----cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 9877655443 33333333333 4777744443 3479999999999999998887 58899999999999 99999
Q ss_pred cCCCcEEEEEeccC
Q 011711 460 DGTGMLSVWKILAK 473 (479)
Q Consensus 460 ~~dg~v~vw~~~~~ 473 (479)
+.||+|+|||+.+.
T Consensus 303 s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 303 AADETLRLWRCFEL 316 (318)
T ss_dssp ETTTEEEEECCSCC
T ss_pred ecCCeEEEEECCCC
Confidence 99999999998654
No 57
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.7e-34 Score=277.77 Aligned_cols=269 Identities=13% Similarity=0.152 Sum_probs=196.7
Q ss_pred EeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeC------CCcEEEEECCCCceEEEEecCCceeE
Q 011711 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR------DGTVQLWDCHTGQSASVINLGAEVGS 238 (479)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~------Dg~v~vwd~~~~~~~~~~~~~~~~~~ 238 (479)
+.++.+.....|++... ...+|+..|++++|+|||++|++++. |+.|++|+..++.....+
T Consensus 20 ~~~~g~~~~~~w~~p~~-----~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~-------- 86 (357)
T 4g56_B 20 FQSNGSSKGSAWGRPVT-----APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESL-------- 86 (357)
T ss_dssp -------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGG--------
T ss_pred EecCCCccccccCCCCC-----CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeE--------
Confidence 34445567788887433 34579999999999999999999997 667777777665432111
Q ss_pred EEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCC
Q 011711 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (479)
Q Consensus 239 ~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~ 317 (479)
.....+|...|.+++|+++ .+++++.||.|++||+.++... ........+|..
T Consensus 87 -------------------------~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~-~~~~~~~~~h~~ 140 (357)
T 4g56_B 87 -------------------------CTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESL-LVNKFAKYEHDD 140 (357)
T ss_dssp -------------------------CSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC---------CCCCEEECCCSS
T ss_pred -------------------------ecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeecccccee-EEEeeccCCCCC
Confidence 1123457888999999988 8888999999999999876532 112234568999
Q ss_pred CeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--C-CEEEEEeCCCeEEEEEcCCCcceEEe
Q 011711 318 PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--D-QYLLSCSLDNTIKVWIMTEEGNLEVA 392 (479)
Q Consensus 318 ~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~-~~l~s~s~dg~i~iwd~~~~~~~~~~ 392 (479)
.|++++|+ +++|++|+.|++|++||+++++++..+.+|...|.++.+. + .++++++.|+.|++||+++++.....
T Consensus 141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~ 220 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI 220 (357)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee
Confidence 99999997 8899999999999999999999999999999999999997 3 47999999999999999988766554
Q ss_pred ccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEECCCc--eEEEEcCCCcEEEEE
Q 011711 393 YTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDG--LFFTGDGTGMLSVWK 469 (479)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g--~l~sg~~dg~v~vw~ 469 (479)
........ ..++.++|++..+|++|+.|+.|++||+.+++....+. +...|++++|+|++ +|++|+.||+|+|||
T Consensus 221 ~~~~~~~~--v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd 298 (357)
T 4g56_B 221 DFCASDTI--PTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLD 298 (357)
T ss_dssp CCTTCCSC--EEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred eecccccc--ccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEE
Confidence 43332222 23334568877799999999999999999998887776 47889999999987 789999999999999
Q ss_pred eccCC
Q 011711 470 ILAKP 474 (479)
Q Consensus 470 ~~~~~ 474 (479)
+..++
T Consensus 299 ~~~~~ 303 (357)
T 4g56_B 299 ADFSE 303 (357)
T ss_dssp TTSCE
T ss_pred CCCCc
Confidence 87654
No 58
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5.4e-34 Score=278.66 Aligned_cols=298 Identities=14% Similarity=0.160 Sum_probs=237.9
Q ss_pred CCeEEEeecCCCceeeEEEecccccEEEEEeCC-CCCEEEEEeCCCcEEEEECCCCceEEEEe--------------cCC
Q 011711 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVIN--------------LGA 234 (479)
Q Consensus 170 d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~-~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~--------------~~~ 234 (479)
+..+++|+.+.. +....+.+|.+.|++++|+| ++++|++++.||.|++||+.+++....+. +..
T Consensus 22 ~~~~~v~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 22 ESTRRVLGLELN-KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHTEEEC-TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cCcceeeccccC-cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 356788888776 66788899999999999999 99999999999999999999887655544 556
Q ss_pred ceeEEEe---CCCEE-EEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC-----EEEEEeCCCcEEEEEccCCCCCc
Q 011711 235 EVGSLIC---EGPWV-FVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-----MLFAGAQDGNILVWKGIPNTQNP 305 (479)
Q Consensus 235 ~~~~~~~---~~~~l-~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-----~l~~g~~dg~i~iwd~~~~~~~~ 305 (479)
.+.++.+ ++.++ +++.++.|++||+.+++......+...+.++.+.+. ++++++.||.|++||+.++.
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--- 177 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS--- 177 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC---
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc---
Confidence 6777765 34444 455799999999999988777778889999999763 89999999999999998764
Q ss_pred ccceeeecCCCCCeEEEEEc--CC-EEEEEeCCCeEEEEECCCCc-EEEEE---------------eCCCCCcEEEEEc-
Q 011711 306 FQLAALLKGHTRPVTCLAVG--GK-RLYSGSMDNTIRVWDLDTLE-AVMTL---------------NGHTDAPMSLLCW- 365 (479)
Q Consensus 306 ~~~~~~~~~h~~~i~~l~~~--~~-~l~sgs~dg~I~iwd~~~~~-~~~~~---------------~~h~~~v~~~~~~- 365 (479)
....+..|...|.+++|+ +. .+++++.||.|++||+++++ ++..+ ..|...|.++.+.
T Consensus 178 --~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 178 --CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp --CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred --eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 366788999999999997 45 69999999999999998865 44444 5688889999997
Q ss_pred -CCEEEEEeCCCeEEEEEcCCCcceEEeccccCcc--ceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-c
Q 011711 366 -DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDH--GVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-S 441 (479)
Q Consensus 366 -~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~ 441 (479)
+++|++++.||.|++||+.+.+.......+.... ....+.... ..+. .+++++.|+.|++||+.+++.+..+. |
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 333 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC-GCSS-EFVFVPYGSTIAVYTVYSGEQITMLKGH 333 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECC-SSSS-CEEEEEETTEEEEEETTTCCEEEEECCC
T ss_pred CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEec-CCCc-eEEEEecCCEEEEEECcCCcceeeeccC
Confidence 6799999999999999999877654443322111 111111111 2223 45666789999999999999988887 5
Q ss_pred cCceEEEEECCCc-eEEEEcCCCcEEEEEeccCCC
Q 011711 442 RREVRVIETGPDG-LFFTGDGTGMLSVWKILAKPN 475 (479)
Q Consensus 442 ~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~~ 475 (479)
...|.+++|+|++ +|++|+.||.|++|++...+.
T Consensus 334 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 334 YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 7899999999999 999999999999999987653
No 59
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.8e-33 Score=270.37 Aligned_cols=282 Identities=12% Similarity=0.061 Sum_probs=233.1
Q ss_pred CCCeEEEeccCCeeEeCCCCCeEEEeecCCC-ceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEE
Q 011711 151 TPKNVCYHWLSGNCVKGDECRFWHSWFCGEG-FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV 229 (479)
Q Consensus 151 ~~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~-~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~ 229 (479)
....+++.+....+++|+.|+.|++||+.++ .+.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++....
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 89 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT 89 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee
Confidence 3356677777889999999999999999887 238899999999999999999999999999999999999988765433
Q ss_pred EecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCccc
Q 011711 230 INLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQ 307 (479)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~ 307 (479)
. ....|...|.+++|+++ +|++++.||.|++||+...... ..
T Consensus 90 ~-----------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~-~~ 133 (372)
T 1k8k_C 90 L-----------------------------------VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW-WV 133 (372)
T ss_dssp E-----------------------------------ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE-EE
T ss_pred E-----------------------------------EeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcc-ee
Confidence 2 22457788999999987 9999999999999999876531 11
Q ss_pred ceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEEC------------------CCCcEEEEEeCCCCCcEEEEEc--
Q 011711 308 LAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDL------------------DTLEAVMTLNGHTDAPMSLLCW-- 365 (479)
Q Consensus 308 ~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~------------------~~~~~~~~~~~h~~~v~~~~~~-- 365 (479)
.......|...|.+++|+ ++++++++.||.|++||+ .+++.+..+..|...+.++.+.
T Consensus 134 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 213 (372)
T 1k8k_C 134 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN 213 (372)
T ss_dssp EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred eeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCC
Confidence 233346789999999996 789999999999999995 4678999999999999999997
Q ss_pred CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC--Cce--------
Q 011711 366 DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS--FME-------- 435 (479)
Q Consensus 366 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~--~~~-------- 435 (479)
+++|++++.|+.|++||+++.+.+..+..+...+..+.+ +|++. +++++ .|+.|++|++.+ ++.
T Consensus 214 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~----~~~~~-~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~ 287 (372)
T 1k8k_C 214 GSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTF----ITESS-LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDV 287 (372)
T ss_dssp SSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEE----EETTE-EEEEE-TTSSCEEEEEETTTTEEEECCCCCC
T ss_pred CCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEE----ecCCC-EEEEE-eCCeEEEEEccCcCceEEEeeccCc
Confidence 679999999999999999999888888877766665555 48887 77766 899999999987 320
Q ss_pred ------------------------e------eee--eccCceEEEEEC-CC----ceEEEEcCCCcEEEEEeccCC
Q 011711 436 ------------------------R------GRI--FSRREVRVIETG-PD----GLFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 436 ------------------------~------~~~--~~~~~v~~l~~s-~~----g~l~sg~~dg~v~vw~~~~~~ 474 (479)
. ..+ .|...|++++|. ++ .+|++|+.||.|++|++.+.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 288 PKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp C--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 0 122 467899999966 66 399999999999999997643
No 60
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.9e-33 Score=263.40 Aligned_cols=246 Identities=21% Similarity=0.309 Sum_probs=210.4
Q ss_pred eeeEEEecccccEEEEEeCCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCC
Q 011711 183 TMLAKLEGHKKAVSGIALPLRS-DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIES 261 (479)
Q Consensus 183 ~~~~~~~~H~~~V~~l~~s~~~-~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~ 261 (479)
.+..++++|.+.|++++|+|++ ++|+||+.|++|++||+.........
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~------------------------------- 56 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV------------------------------- 56 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE-------------------------------
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc-------------------------------
Confidence 5677899999999999999865 89999999999999998643211100
Q ss_pred CceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCe
Q 011711 262 SAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNT 337 (479)
Q Consensus 262 ~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~ 337 (479)
....+.+|...|.+++++++ +|++|+.|++|++||+.++. ....+.+|...|.+++++ +.++++|+.|++
T Consensus 57 -~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~ 130 (319)
T 3frx_A 57 -PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE-----TYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130 (319)
T ss_dssp -EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEECTTSCEEEEEETTSC
T ss_pred -cceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC-----eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 01245689999999999988 99999999999999998764 467789999999999997 789999999999
Q ss_pred EEEEECCCCcEEEEEeCCCCCcEEEEEcC--------CEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeC
Q 011711 338 IRVWDLDTLEAVMTLNGHTDAPMSLLCWD--------QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLND 409 (479)
Q Consensus 338 I~iwd~~~~~~~~~~~~h~~~v~~~~~~~--------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (479)
|++||++ ++++..+.+|...+.++.+.+ ..+++++.|+.|++||+++.+....+..|...+..+.+ +
T Consensus 131 i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~----s 205 (319)
T 3frx_A 131 IKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA----S 205 (319)
T ss_dssp EEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEE----C
T ss_pred EEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEE----c
Confidence 9999996 567889999999999998863 38999999999999999988877778788877666665 5
Q ss_pred CCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 410 PDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 410 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
|+++ +|++++.|+.|++||+.+++.+..+.+...|.+++|+|++ .|++++. +.+++|++..
T Consensus 206 p~g~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~ 267 (319)
T 3frx_A 206 PDGT-LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA-TGIKVFSLDP 267 (319)
T ss_dssp TTSS-EEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEET-TEEEEEEETT
T ss_pred CCCC-EEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCc
Confidence 9998 8999999999999999999999988888999999999999 6666664 4599999865
No 61
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.8e-34 Score=299.89 Aligned_cols=292 Identities=20% Similarity=0.283 Sum_probs=228.9
Q ss_pred CCCCCCCCCCCCCCCCCc-eeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCC--eEEEeccC
Q 011711 85 PVSNHKKSPPSYNCPKNN-VRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK--NVCYHWLS 161 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g-~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~c~~~~~ 161 (479)
.+.+|.+.|++++|+|++ .+|+|||.||+|+||++....... ....+.+.+|... .+++.+.+
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~--------------~~~~~~~~~h~~~v~~v~~s~~g 442 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY--------------GVAQRRLTGHSHFVEDVVLSSDG 442 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS--------------CEEEEEEECCSSCEEEEEECTTS
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc--------------ccccceecCCCCcEEEEEECCCC
Confidence 467999999999999865 789999999999999876533200 0112334445444 45566677
Q ss_pred CeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEe
Q 011711 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 241 (479)
..+++|+.|+.|++||+.++ +.+..+.+|...|.+++|+|++++|+|++.|++|++||...........
T Consensus 443 ~~l~sgs~Dg~v~vwd~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~---------- 511 (694)
T 3dm0_A 443 QFALSGSWDGELRLWDLAAG-VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE---------- 511 (694)
T ss_dssp SEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS----------
T ss_pred CEEEEEeCCCcEEEEECCCC-cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc----------
Confidence 79999999999999999988 7888999999999999999999999999999999999976433221110
Q ss_pred CCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC----EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCC
Q 011711 242 EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (479)
Q Consensus 242 ~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~ 317 (479)
...+|...|.+++|+++ .+++|+.|+.|++||+.+.. ....+.+|..
T Consensus 512 ------------------------~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~-----~~~~~~~h~~ 562 (694)
T 3dm0_A 512 ------------------------GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-----LRSTLAGHTG 562 (694)
T ss_dssp ------------------------STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC-----EEEEECCCSS
T ss_pred ------------------------CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc-----EEEEEcCCCC
Confidence 12358888999999876 69999999999999998754 4677899999
Q ss_pred CeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc-CCEEEEEeCCCeEEEEEcCCCcceEEecc
Q 011711 318 PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYT 394 (479)
Q Consensus 318 ~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 394 (479)
.|++++|+ +++|++|+.||+|++||+++++.+..+.. ...+.++.++ +..+++++.|+.|++||+++...+..+..
T Consensus 563 ~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~ 641 (694)
T 3dm0_A 563 YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKV 641 (694)
T ss_dssp CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECC
T ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhcc
Confidence 99999997 88999999999999999999999888764 4568888888 34455555677899999998876665543
Q ss_pred ccCc---------------cceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC
Q 011711 395 HNED---------------HGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (479)
Q Consensus 395 ~~~~---------------~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 432 (479)
+... ......++.++|+|+ +|++|+.||.|++|++..
T Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~-~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 642 DLKAEAEKADNSGPAATKRKVIYCTSLNWSADGS-TLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp CCC----------------CCCCEEEEEECTTSS-EEEEEETTSEEEEEEC--
T ss_pred ccccccccccccccccCCceeEEeeeEEEcCCCC-EEEEEcCCCeEEEEeccC
Confidence 2111 011134456789998 899999999999999853
No 62
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.6e-33 Score=260.84 Aligned_cols=244 Identities=15% Similarity=0.228 Sum_probs=199.7
Q ss_pred eEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCC--ceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCC
Q 011711 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG--QSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESS 262 (479)
Q Consensus 185 ~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~ 262 (479)
+..+.+|.+.|.+++|+|++++|++|+.|++|+|||+..+ +.+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~----------------------------------- 46 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLI----------------------------------- 46 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCC-----------------------------------
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEE-----------------------------------
Confidence 3467899999999999999999999999999999998743 222
Q ss_pred ceEEecCCCccEEEEEEcC----CEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc----CCEEEEEeC
Q 011711 263 AEFSLDGPVGEVYSMVVAN----EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG----GKRLYSGSM 334 (479)
Q Consensus 263 ~~~~~~~~~~~v~~~~~~~----~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~----~~~l~sgs~ 334 (479)
..+.+|.+.|.+++|++ ++|++|+.||+|++||+.++. ......+.+|...|.+++|+ +.+|++++.
T Consensus 47 --~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~---~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~ 121 (297)
T 2pm7_B 47 --DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR---WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS 121 (297)
T ss_dssp --EEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC---BCCCEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred --EEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc---eEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC
Confidence 23457999999999964 399999999999999998754 22356678899999999996 679999999
Q ss_pred CCeEEEEECCCCc--EEEEEeCCCCCcEEEEEcC---------------CEEEEEeCCCeEEEEEcCCCc----ceEEec
Q 011711 335 DNTIRVWDLDTLE--AVMTLNGHTDAPMSLLCWD---------------QYLLSCSLDNTIKVWIMTEEG----NLEVAY 393 (479)
Q Consensus 335 dg~I~iwd~~~~~--~~~~~~~h~~~v~~~~~~~---------------~~l~s~s~dg~i~iwd~~~~~----~~~~~~ 393 (479)
|++|++||++++. ....+.+|...|.++.+.. ++|++++.|+.|++||+++.. ....+.
T Consensus 122 d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~ 201 (297)
T 2pm7_B 122 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 201 (297)
T ss_dssp TSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC
T ss_pred CCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec
Confidence 9999999998763 2467789999999999873 489999999999999998765 334555
Q ss_pred cccCccceEEEeeeeCCCC--CcEEEEEeCCCeEEEeecCCCce--e-eee---eccCceEEEEECCCc-eEEEEcCCCc
Q 011711 394 THNEDHGVLALGGLNDPDG--NPVLICSCNDDSVHLYELPSFME--R-GRI---FSRREVRVIETGPDG-LFFTGDGTGM 464 (479)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~--~-~~~---~~~~~v~~l~~s~~g-~l~sg~~dg~ 464 (479)
.|...+..+.+ +|++ ..+|++++.|++|++||+++... . ..+ .+...|.+++|+|+| +|++++.||.
T Consensus 202 ~H~~~V~~v~~----sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~ 277 (297)
T 2pm7_B 202 GHSDWVRDVAW----SPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 277 (297)
T ss_dssp CCSSCEEEEEE----CCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSC
T ss_pred CCCCceEEEEE----CCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCc
Confidence 66666655555 5875 35899999999999999987431 1 111 246789999999999 9999999999
Q ss_pred EEEEEecc
Q 011711 465 LSVWKILA 472 (479)
Q Consensus 465 v~vw~~~~ 472 (479)
|++|+...
T Consensus 278 v~lw~~~~ 285 (297)
T 2pm7_B 278 VTLWKENL 285 (297)
T ss_dssp EEEEEECT
T ss_pred EEEEEECC
Confidence 99999864
No 63
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.5e-33 Score=266.71 Aligned_cols=251 Identities=21% Similarity=0.267 Sum_probs=207.7
Q ss_pred CceeeEEEecccc-cEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEc
Q 011711 181 GFTMLAKLEGHKK-AVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHI 259 (479)
Q Consensus 181 ~~~~~~~~~~H~~-~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~ 259 (479)
..+++..+++|.+ .|.+++|+|++++|++|+.|++|+|||+.+++.....
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~----------------------------- 54 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKS----------------------------- 54 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEE-----------------------------
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeee-----------------------------
Confidence 4477889999988 9999999999999999999999999998876533221
Q ss_pred CCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCC
Q 011711 260 ESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMD 335 (479)
Q Consensus 260 ~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~d 335 (479)
....+|...|.+++|+|+ +|++|+.|+.|++||+.... .+....+.+|...|.+++|+ +++|++|+.|
T Consensus 55 -----~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~---~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D 126 (345)
T 3fm0_A 55 -----VLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD---FECVTTLEGHENEVKSVAWAPSGNLLATCSRD 126 (345)
T ss_dssp -----EECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC----EEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred -----eeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC---eEEEEEccCCCCCceEEEEeCCCCEEEEEECC
Confidence 122468999999999987 99999999999999987654 34567789999999999997 8899999999
Q ss_pred CeEEEEECCCC---cEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcc--eEEeccccCccceEEEeeee
Q 011711 336 NTIRVWDLDTL---EAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGN--LEVAYTHNEDHGVLALGGLN 408 (479)
Q Consensus 336 g~I~iwd~~~~---~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~ 408 (479)
++|++||++++ +++..+.+|...|.++.++ +++|++++.|+.|++||.++... ...+..|...+..+.+
T Consensus 127 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~---- 202 (345)
T 3fm0_A 127 KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF---- 202 (345)
T ss_dssp SCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE----
T ss_pred CeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEE----
Confidence 99999999876 3567788999999999997 68999999999999999987643 3455667666655555
Q ss_pred CCCCCcEEEEEeCCCeEEEeecCCCc---------------eeeeee--ccCceEEEEECCCc-eEEEEcCCCcEEEEEe
Q 011711 409 DPDGNPVLICSCNDDSVHLYELPSFM---------------ERGRIF--SRREVRVIETGPDG-LFFTGDGTGMLSVWKI 470 (479)
Q Consensus 409 ~~~~~~~l~s~~~dg~v~iwd~~~~~---------------~~~~~~--~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~ 470 (479)
+|+++ +|++++.|++|++||..... .+..+. |...|.+++|+|++ .|++++.|+.|++|+.
T Consensus 203 sp~g~-~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~ 281 (345)
T 3fm0_A 203 DPSGQ-RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQE 281 (345)
T ss_dssp CTTSS-EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEE
T ss_pred CCCCC-EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEe
Confidence 69998 89999999999999964321 111221 56789999999999 9999999999999998
Q ss_pred ccC
Q 011711 471 LAK 473 (479)
Q Consensus 471 ~~~ 473 (479)
...
T Consensus 282 ~~~ 284 (345)
T 3fm0_A 282 DPN 284 (345)
T ss_dssp CTT
T ss_pred CCC
Confidence 754
No 64
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.6e-32 Score=272.18 Aligned_cols=291 Identities=20% Similarity=0.355 Sum_probs=243.2
Q ss_pred EeecCCCceeeEEEecccccE-EEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEe-cCCceeEEEe--CCCEEEEEc
Q 011711 175 SWFCGEGFTMLAKLEGHKKAV-SGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN-LGAEVGSLIC--EGPWVFVGM 250 (479)
Q Consensus 175 vw~~~~~~~~~~~~~~H~~~V-~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~--~~~~l~~~~ 250 (479)
.|...........+.+|...| .++.+ ++++|++|+.||+|++||+.+++.+..+. +...+.++.+ ++.+++++.
T Consensus 104 ~w~~~~~~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~ 181 (464)
T 3v7d_B 104 NWYNPKFVPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGST 181 (464)
T ss_dssp HHHCTTCCCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEET
T ss_pred hhcCCCcCcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeC
Confidence 344333335667899999885 66665 57899999999999999999999998887 4456666665 444455568
Q ss_pred CCeEEEEEcCCCceE-EecCCCccEEEEEEcC--C--EEEEEeCCCcEEEEEccCCCCCcc------------------c
Q 011711 251 PNVVKAWHIESSAEF-SLDGPVGEVYSMVVAN--E--MLFAGAQDGNILVWKGIPNTQNPF------------------Q 307 (479)
Q Consensus 251 ~~~i~v~~~~~~~~~-~~~~~~~~v~~~~~~~--~--~l~~g~~dg~i~iwd~~~~~~~~~------------------~ 307 (479)
|+.|++||+++++.. .+.+|...|.++++.+ + .+++|+.||.|++||+.+...... .
T Consensus 182 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (464)
T 3v7d_B 182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY 261 (464)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTT
T ss_pred CCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeE
Confidence 999999999988765 5667999999999973 3 899999999999999987653210 0
Q ss_pred ceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCC
Q 011711 308 LAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTE 385 (479)
Q Consensus 308 ~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~ 385 (479)
....+.+|...|.++..+++++++|+.||.|++||+++++++..+.+|...|.++.++ ++++++++.||.|++||+++
T Consensus 262 ~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 262 FVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp EEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred EEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 2556789999999999999999999999999999999999999999999999999998 67999999999999999999
Q ss_pred CcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcCCCc
Q 011711 386 EGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDGTGM 464 (479)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~ 464 (479)
++.+..+..|...+..+.+ + +. ++++++.||.|++||+.++.......+...+..++|+|++ ++++|+ ||.
T Consensus 342 ~~~~~~~~~h~~~v~~~~~----~--~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~ 413 (464)
T 3v7d_B 342 GELMYTLQGHTALVGLLRL----S--DK-FLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQ 413 (464)
T ss_dssp TEEEEEECCCSSCEEEEEE----C--SS-EEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTE
T ss_pred CcEEEEEeCCCCcEEEEEE----c--CC-EEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCe
Confidence 9888888888777665555 2 34 8999999999999999999888888788889999999999 888887 999
Q ss_pred EEEEEeccCCC
Q 011711 465 LSVWKILAKPN 475 (479)
Q Consensus 465 v~vw~~~~~~~ 475 (479)
|++||+.+++.
T Consensus 414 i~iwd~~~g~~ 424 (464)
T 3v7d_B 414 FNIYNLRSGKL 424 (464)
T ss_dssp EEEEETTTCCE
T ss_pred EEEEECCCCcE
Confidence 99999987653
No 65
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=9.5e-34 Score=265.53 Aligned_cols=246 Identities=21% Similarity=0.263 Sum_probs=195.6
Q ss_pred CCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeE
Q 011711 86 VSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCV 165 (479)
Q Consensus 86 ~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 165 (479)
+.||...|.+++|+|+|++||+|+.||+|+||+..+..
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~------------------------------------------ 42 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET------------------------------------------ 42 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC------------------------------------------
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC------------------------------------------
Confidence 56899999999999999999999999999888533110
Q ss_pred eCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCC--CCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCC
Q 011711 166 KGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLR--SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEG 243 (479)
Q Consensus 166 ~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~--~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 243 (479)
.+.+..+.+|.++|.+++|+++ +++|+||+.|++|++||+.+++...
T Consensus 43 ----------------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~--------------- 91 (297)
T 2pm7_B 43 ----------------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQ--------------- 91 (297)
T ss_dssp ----------------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCC---------------
T ss_pred ----------------cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEE---------------
Confidence 1345678899999999999764 8999999999999999998764211
Q ss_pred CEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC----EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCe
Q 011711 244 PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPV 319 (479)
Q Consensus 244 ~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i 319 (479)
...+..|...|.+++|+|+ +|++|+.||.|++||+..... .....+.+|...|
T Consensus 92 --------------------~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~---~~~~~~~~h~~~v 148 (297)
T 2pm7_B 92 --------------------IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT---TSPIIIDAHAIGV 148 (297)
T ss_dssp --------------------CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC---BCCEEEECCSSCE
T ss_pred --------------------EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc---eeeeeeecccCcc
Confidence 1123468889999999874 899999999999999987532 1135578899999
Q ss_pred EEEEEcC---------------CEEEEEeCCCeEEEEECCCCc----EEEEEeCCCCCcEEEEEcC-----CEEEEEeCC
Q 011711 320 TCLAVGG---------------KRLYSGSMDNTIRVWDLDTLE----AVMTLNGHTDAPMSLLCWD-----QYLLSCSLD 375 (479)
Q Consensus 320 ~~l~~~~---------------~~l~sgs~dg~I~iwd~~~~~----~~~~~~~h~~~v~~~~~~~-----~~l~s~s~d 375 (479)
.+++|+. ++|++|+.|++|++||+++++ ...++.+|...|.++++++ .+|++++.|
T Consensus 149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D 228 (297)
T 2pm7_B 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228 (297)
T ss_dssp EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC
Confidence 9999972 589999999999999998876 6778899999999999983 589999999
Q ss_pred CeEEEEEcCCCcc--e-EEe--ccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC
Q 011711 376 NTIKVWIMTEEGN--L-EVA--YTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (479)
Q Consensus 376 g~i~iwd~~~~~~--~-~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 432 (479)
++|++||+++... . ..+ ..+... ...+.|+|+++ +|++++.|+.|++|+...
T Consensus 229 ~~v~iWd~~~~~~~~~~~~~~~~~~~~~----v~~~~~s~~g~-~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 229 RTCIIWTQDNEQGPWKKTLLKEEKFPDV----LWRASWSLSGN-VLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SCEEEEEESSTTSCCEEEESSSSCCSSC----EEEEEECSSSC-CEEEEETTSCEEEEEECT
T ss_pred CcEEEEEeCCCCCccceeeeecccCCCc----EEEEEECCCCC-EEEEEcCCCcEEEEEECC
Confidence 9999999986432 1 122 122222 34445679998 888999999999999863
No 66
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.1e-32 Score=256.11 Aligned_cols=247 Identities=21% Similarity=0.391 Sum_probs=208.8
Q ss_pred CceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcC
Q 011711 181 GFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIE 260 (479)
Q Consensus 181 ~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~ 260 (479)
.+.+...+.+|.+.|++++|+|++++|++++.||.|++|++.+++....+
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~------------------------------ 61 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI------------------------------ 61 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE------------------------------
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh------------------------------
Confidence 34677889999999999999999999999999999999999888765443
Q ss_pred CCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCC
Q 011711 261 SSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDN 336 (479)
Q Consensus 261 ~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg 336 (479)
.+|...|.+++|+++ +|++|+.||.|++||+.++. ....+.+|...|.++.|+ ++++++|+.|+
T Consensus 62 -------~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 129 (312)
T 4ery_A 62 -------SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129 (312)
T ss_dssp -------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCEEEEEECSSSSEEEEEETTS
T ss_pred -------ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc-----EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 368888999999987 99999999999999998764 467788999999999997 88999999999
Q ss_pred eEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccc-cCccceEEEeeeeCCCCC
Q 011711 337 TIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTH-NEDHGVLALGGLNDPDGN 413 (479)
Q Consensus 337 ~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 413 (479)
.|++||+++++.+..+..|...+.++.+. +++|++++.||.|++||+++.+.+..+... ...+..+ .++|+++
T Consensus 130 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 205 (312)
T 4ery_A 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV----KFSPNGK 205 (312)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEE----EECTTSS
T ss_pred cEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEE----EECCCCC
Confidence 99999999999999999999999999997 689999999999999999988776655433 2333333 3469988
Q ss_pred cEEEEEeCCCeEEEeecCCCceeeeeec-cCc---eEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 414 PVLICSCNDDSVHLYELPSFMERGRIFS-RRE---VRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 414 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~---v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
++++++.|+.|++||+.+++.+..+.. ... +......+++ +|++|+.||.|++||+.+++
T Consensus 206 -~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 270 (312)
T 4ery_A 206 -YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270 (312)
T ss_dssp -EEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch
Confidence 888899999999999999988777654 222 3333344566 99999999999999997654
No 67
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-33 Score=277.22 Aligned_cols=281 Identities=14% Similarity=0.247 Sum_probs=224.5
Q ss_pred eecCCCceeeEEE-ecccccEEEEEeCC-CCCEEEEEeCCCcEEEEECCC---Cc---eEEEEecCCceeEEEe--CCCE
Q 011711 176 WFCGEGFTMLAKL-EGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHT---GQ---SASVINLGAEVGSLIC--EGPW 245 (479)
Q Consensus 176 w~~~~~~~~~~~~-~~H~~~V~~l~~s~-~~~~l~s~s~Dg~v~vwd~~~---~~---~~~~~~~~~~~~~~~~--~~~~ 245 (479)
|+. ++ +++..+ ++|.+.|++++|+| ++++|++|+.||+|++||+.+ +. ....+.+...+.++.+ ++.+
T Consensus 48 w~~-~g-~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 125 (437)
T 3gre_A 48 GNL-RG-KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDA 125 (437)
T ss_dssp GGC-CC-CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSE
T ss_pred ccc-cc-eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCE
Confidence 763 34 677888 89999999999999 999999999999999999876 33 4455567777887776 5666
Q ss_pred EEE-EcCCeEEEEEcC---CCceEE-----------ecC--CCccEEEEEEc--CC--EEEEEeCCCcEEEEEccCCCCC
Q 011711 246 VFV-GMPNVVKAWHIE---SSAEFS-----------LDG--PVGEVYSMVVA--NE--MLFAGAQDGNILVWKGIPNTQN 304 (479)
Q Consensus 246 l~~-~~~~~i~v~~~~---~~~~~~-----------~~~--~~~~v~~~~~~--~~--~l~~g~~dg~i~iwd~~~~~~~ 304 (479)
+++ +.|+.|++||++ .++... +.. +...+.++.+. ++ .|++|+.||.|++||+.+..
T Consensus 126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-- 203 (437)
T 3gre_A 126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE-- 203 (437)
T ss_dssp EEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC--
T ss_pred EEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe--
Confidence 655 588999999995 333321 111 55667777643 44 99999999999999998764
Q ss_pred cccceeeecC--CCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEe-CCCCCcEEEEEc------CCEEEEEe
Q 011711 305 PFQLAALLKG--HTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLN-GHTDAPMSLLCW------DQYLLSCS 373 (479)
Q Consensus 305 ~~~~~~~~~~--h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~v~~~~~~------~~~l~s~s 373 (479)
....+.. |...|++++|+ +++|++|+.||.|++||+++++++.++. .|...|.++.+. +.+|++++
T Consensus 204 ---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~ 280 (437)
T 3gre_A 204 ---RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS 280 (437)
T ss_dssp ---EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEES
T ss_pred ---eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEc
Confidence 3566666 89999999996 8899999999999999999999999986 788889999665 34899999
Q ss_pred CCCeEEEEEcCCCcceEEeccccC--------------------------ccceEEEeeeeCCCCCcEEEEEeCCCeEEE
Q 011711 374 LDNTIKVWIMTEEGNLEVAYTHNE--------------------------DHGVLALGGLNDPDGNPVLICSCNDDSVHL 427 (479)
Q Consensus 374 ~dg~i~iwd~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~l~s~~~dg~v~i 427 (479)
.||.|++||+++++.+..+..+.. .+..+.+ + +++ +|++++.|+.|++
T Consensus 281 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~----~-~~~-~l~s~~~d~~i~~ 354 (437)
T 3gre_A 281 SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISV----S-NDK-ILLTDEATSSIVM 354 (437)
T ss_dssp TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEE----E-TTE-EEEEEGGGTEEEE
T ss_pred CCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEE----C-Cce-EEEecCCCCeEEE
Confidence 999999999998887777665432 2223333 3 444 8999999999999
Q ss_pred eecCCCceeeeee--------------------------------------ccCceEEEEECCC--c-eEEEEcCCCcEE
Q 011711 428 YELPSFMERGRIF--------------------------------------SRREVRVIETGPD--G-LFFTGDGTGMLS 466 (479)
Q Consensus 428 wd~~~~~~~~~~~--------------------------------------~~~~v~~l~~s~~--g-~l~sg~~dg~v~ 466 (479)
||+.+++....+. |...|.+++|+++ + +|++|+.||.|+
T Consensus 355 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~ 434 (437)
T 3gre_A 355 FSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIG 434 (437)
T ss_dssp EETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEE
T ss_pred EECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEE
Confidence 9999987766554 5788999999998 6 999999999999
Q ss_pred EEE
Q 011711 467 VWK 469 (479)
Q Consensus 467 vw~ 469 (479)
||+
T Consensus 435 iw~ 437 (437)
T 3gre_A 435 IFQ 437 (437)
T ss_dssp EEC
T ss_pred EeC
Confidence 995
No 68
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-32 Score=268.95 Aligned_cols=292 Identities=14% Similarity=0.122 Sum_probs=233.4
Q ss_pred CeEEEeecCCCceeeEEEecccccEEEEEeCCCCC-EEEEEeCCCcEEEEEC----CCCc------eEEEEec-------
Q 011711 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSD-KLYSGSRDGTVQLWDC----HTGQ------SASVINL------- 232 (479)
Q Consensus 171 ~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~-~l~s~s~Dg~v~vwd~----~~~~------~~~~~~~------- 232 (479)
..+.+|+.+... .......|.+.|++++|+|+++ +|++++.||.|++||+ .+++ ....+..
T Consensus 25 ~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 1r5m_A 25 SIDSSDDLDGFV-KILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSAS 103 (425)
T ss_dssp ---------CCC-EECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC--
T ss_pred cccccccchhhh-hheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccc
Confidence 456788886653 3333445679999999999999 9999999999999999 8888 4555544
Q ss_pred ----CCceeEEEe--CCCEEEEE-cCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCC
Q 011711 233 ----GAEVGSLIC--EGPWVFVG-MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQ 303 (479)
Q Consensus 233 ----~~~~~~~~~--~~~~l~~~-~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~ 303 (479)
...+.++.+ ++.+++++ .++.|++|+........+..|...|.+++|+++ .|++++.||.|++||+.++.
T Consensus 104 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~- 182 (425)
T 1r5m_A 104 SGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT- 182 (425)
T ss_dssp ----CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE-
T ss_pred ccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc-
Confidence 225666654 67777665 789999999666666678889999999999987 89999999999999998754
Q ss_pred CcccceeeecCCCCC---------------eEEEEEc-CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--
Q 011711 304 NPFQLAALLKGHTRP---------------VTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-- 365 (479)
Q Consensus 304 ~~~~~~~~~~~h~~~---------------i~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~-- 365 (479)
....+..+... +.++.++ +..+++++.||.|++||+++++.+..+..|...+.++.+.
T Consensus 183 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~ 258 (425)
T 1r5m_A 183 ----VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT 258 (425)
T ss_dssp ----EEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT
T ss_pred ----EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC
Confidence 35556666665 8888887 7889999999999999999999999999999999999987
Q ss_pred CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec-cCc
Q 011711 366 DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS-RRE 444 (479)
Q Consensus 366 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~ 444 (479)
+++|++++.|+.|++||+++.+....+..+...+..+.+ +|++ ++++++.|+.|++||+.+++.+..+.. ...
T Consensus 259 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~----~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 332 (425)
T 1r5m_A 259 NKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW----VGDD--KVISCSMDGSVRLWSLKQNTLLALSIVDGVP 332 (425)
T ss_dssp TTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEE----ETTT--EEEEEETTSEEEEEETTTTEEEEEEECTTCC
T ss_pred CCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEE----CCCC--EEEEEeCCCcEEEEECCCCcEeEecccCCcc
Confidence 689999999999999999998888888777776665555 4887 788899999999999999988887764 788
Q ss_pred eEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 445 VRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 445 v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
|.+++|+|++ +|++++.||.|++|++....
T Consensus 333 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 333 IFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred EEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 9999999999 99999999999999998654
No 69
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.5e-32 Score=268.53 Aligned_cols=273 Identities=16% Similarity=0.193 Sum_probs=224.8
Q ss_pred CeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 011711 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (479)
Q Consensus 153 ~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~ 232 (479)
..+++.+.+..+++|+.|+.|++||+.++ +....+..| ..+....|++++++|++++.||.|++||+.+++....+
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-- 135 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIR-DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID-- 135 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSE-ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET--
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEeccc-ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec--
Confidence 36788889999999999999999999877 555666666 45556678999999999999999999999877655332
Q ss_pred CCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCccccee
Q 011711 233 GAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAA 310 (479)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 310 (479)
..|...|.+++|+++ +|++|+.||.|++||+.++.. ..
T Consensus 136 -----------------------------------~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-----~~ 175 (420)
T 3vl1_A 136 -----------------------------------QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-----PR 175 (420)
T ss_dssp -----------------------------------TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-----CE
T ss_pred -----------------------------------ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-----ce
Confidence 368899999999987 999999999999999987653 56
Q ss_pred eecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeC---CCCCcEEEEE---------------------
Q 011711 311 LLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNG---HTDAPMSLLC--------------------- 364 (479)
Q Consensus 311 ~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~v~~~~~--------------------- 364 (479)
.+.+|...|.+++|+ +++|++++.||.|++||+++++.+..+.. |...+.++.+
T Consensus 176 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~ 255 (420)
T 3vl1_A 176 TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255 (420)
T ss_dssp EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS
T ss_pred EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE
Confidence 778999999999996 88999999999999999999999999975 4455565554
Q ss_pred --cCCEEEEEeCCCeEEEEEcCCCcceEEecc-ccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCce-eeeee
Q 011711 365 --WDQYLLSCSLDNTIKVWIMTEEGNLEVAYT-HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFME-RGRIF 440 (479)
Q Consensus 365 --~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~ 440 (479)
++++|++++.||.|++||+++.+....+.. +...+..+.+ +|++..+|++++.||.|++||+.+++. +..+.
T Consensus 256 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 331 (420)
T 3vl1_A 256 GTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTV----DGNNANYIYAGYENGMLAQWDLRSPECPVGEFL 331 (420)
T ss_dssp SCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEE----CSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE
T ss_pred cCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEE----eCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh
Confidence 256999999999999999998877666544 4444444444 688877899999999999999998754 44444
Q ss_pred --ccCceEEEEECCCceEEEEcCCCcEEEEEeccC
Q 011711 441 --SRREVRVIETGPDGLFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 441 --~~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~~ 473 (479)
+...+.++.+.+..+|++++.||.|++|++...
T Consensus 332 ~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 332 INEGTPINNVYFAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp ESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred ccCCCCceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence 467788886664449999999999999999874
No 70
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=267.19 Aligned_cols=335 Identities=16% Similarity=0.144 Sum_probs=229.6
Q ss_pred CCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEE--Eec-cCCeeEeCCCCCeEEEeecCCCceeeEE
Q 011711 111 EGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVC--YHW-LSGNCVKGDECRFWHSWFCGEGFTMLAK 187 (479)
Q Consensus 111 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c--~~~-~~~~~~~g~~d~~i~vw~~~~~~~~~~~ 187 (479)
|+++++|+.+.... ...+..|.....| +.+ .+..+++|+.|+.|++||+.++ +....
T Consensus 22 ~~~~~v~~~~~~~~-------------------~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~ 81 (408)
T 4a11_B 22 ESTRRVLGLELNKD-------------------RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENS-SRQSY 81 (408)
T ss_dssp HHHHHHHTEEECTT-------------------EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCC-SSSSC
T ss_pred cCcceeeccccCcc-------------------eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCC-cccce
Confidence 67788886554322 2222334444444 444 5678999999999999999876 33333
Q ss_pred E-------------ecccccEEEEEeCC-CCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEe-----CCCEEEE
Q 011711 188 L-------------EGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC-----EGPWVFV 248 (479)
Q Consensus 188 ~-------------~~H~~~V~~l~~s~-~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~ 248 (479)
+ .+|...|.+++|+| ++++|++++.||.|++||+.+++....+.....+..+.. ++.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (408)
T 4a11_B 82 YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAV 161 (408)
T ss_dssp EEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEE
T ss_pred EeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEE
Confidence 3 26999999999999 788999999999999999999999999988877777664 3335554
Q ss_pred -EcCCeEEEEEcCCCceE-EecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCc-----------ccceeee
Q 011711 249 -GMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNP-----------FQLAALL 312 (479)
Q Consensus 249 -~~~~~i~v~~~~~~~~~-~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~-----------~~~~~~~ 312 (479)
+.++.|++||+.+++.. .+..|...|.+++|+++ ++++|+.||.|++||++...... .......
T Consensus 162 ~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (408)
T 4a11_B 162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN 241 (408)
T ss_dssp EESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSS
T ss_pred EcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccc
Confidence 58899999999987754 56789999999999987 58999999999999998764210 1112223
Q ss_pred cCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCC------CcEEEEEc-CCEEEEEeCCCeEEEEEc
Q 011711 313 KGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD------APMSLLCW-DQYLLSCSLDNTIKVWIM 383 (479)
Q Consensus 313 ~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~------~v~~~~~~-~~~l~s~s~dg~i~iwd~ 383 (479)
..|...|.+++|+ +++|++++.||.|++||+++++....+..+.. ........ +..+++++.|+.|++||+
T Consensus 242 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~ 321 (408)
T 4a11_B 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTV 321 (408)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEET
T ss_pred ccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEEC
Confidence 6789999999996 88999999999999999999887655443221 11222222 567778888999999999
Q ss_pred CCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc--eEEEEcC
Q 011711 384 TEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG--LFFTGDG 461 (479)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sg~~ 461 (479)
.++..+..+..|...+..+.+ +|+++ +|++++.||.|++||+.+++.+.......... .+.+.. .+.+.+.
T Consensus 322 ~~~~~~~~~~~~~~~v~~~~~----s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 394 (408)
T 4a11_B 322 YSGEQITMLKGHYKTVDCCVF----QSNFQ-ELYSGSRDCNILAWVPSLYEPVPDDDETTTKS--QLNPAFEDAWSSSDE 394 (408)
T ss_dssp TTCCEEEEECCCSSCEEEEEE----ETTTT-EEEEEETTSCEEEEEECC-------------------------------
T ss_pred cCCcceeeeccCCCeEEEEEE----cCCCC-EEEEECCCCeEEEEeCCCCCccCCCCceEecc--ccccccceeecccCc
Confidence 999998888888877766666 49988 89999999999999999988776554433332 333322 6778888
Q ss_pred CCcEEEEEecc
Q 011711 462 TGMLSVWKILA 472 (479)
Q Consensus 462 dg~v~vw~~~~ 472 (479)
|+.+++|+...
T Consensus 395 ~~~~~~W~~~~ 405 (408)
T 4a11_B 395 EGGTSAWSHPQ 405 (408)
T ss_dssp -----------
T ss_pred cCceeecCCcc
Confidence 99999998654
No 71
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=9.8e-34 Score=272.66 Aligned_cols=291 Identities=14% Similarity=0.155 Sum_probs=221.6
Q ss_pred CCCCCCCCCCCCCCC----ce-eccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCC--eEEEec
Q 011711 87 SNHKKSPPSYNCPKN----NV-RVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK--NVCYHW 159 (479)
Q Consensus 87 ~gh~~~i~~~~~s~~----g~-~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~c~~~ 159 (479)
.+|..+|++++|+|+ .. ++++++ ||.++||+..+.... ..+..... ..+... .+++.+
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~-~~~v~vw~~~~~~~~----~~~~~~~~----------~~~~~~v~~~~~~~ 79 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVG-SNRVTLYECHSQGEI----RLLQSYVD----------ADADENFYTCAWTY 79 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEE-TTEEEEEEECGGGCE----EEEEEEEC----------SCTTCCEEEEEEEE
T ss_pred cCCCCceEEEEEecccCCCCceEEEECC-CCEEEEEEcCCCcEE----Eeeeeccc----------cCCCCcEEEEEecc
Confidence 589999999999983 33 555555 889999986643220 00000000 001223 344554
Q ss_pred c----CCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCC-CCCEEEEEeCCCcEEEEECCCCceEEEEecCC
Q 011711 160 L----SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGA 234 (479)
Q Consensus 160 ~----~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~-~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~ 234 (479)
. ...+++|+.|+.|++||+.++ +.+..+.+|...|.+++|+| ++++|++++.||.|++||+.+++.+..+..
T Consensus 80 ~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-- 156 (366)
T 3k26_A 80 DSNTSHPLLAVAGSRGIIRIINPITM-QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG-- 156 (366)
T ss_dssp CTTTCCEEEEEEETTCEEEEECTTTC-CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS--
T ss_pred CCCCCCCEEEEecCCCEEEEEEchhc-eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc--
Confidence 4 347999999999999999988 78899999999999999999 999999999999999999998877655421
Q ss_pred ceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCc-------
Q 011711 235 EVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNP------- 305 (479)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~------- 305 (479)
...|...|.+++|+++ .|++++.||.|++||+.+.....
T Consensus 157 --------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 204 (366)
T 3k26_A 157 --------------------------------VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 204 (366)
T ss_dssp --------------------------------TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHT
T ss_pred --------------------------------cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEE
Confidence 2358889999999987 99999999999999987643210
Q ss_pred ----------------ccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCcE--------------EEEEeCC
Q 011711 306 ----------------FQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEA--------------VMTLNGH 355 (479)
Q Consensus 306 ----------------~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~--------------~~~~~~h 355 (479)
.........|...|.+++|+++++++++.|+.|++||+++++. +..+..|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (366)
T 3k26_A 205 YNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS 284 (366)
T ss_dssp CCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS
T ss_pred ecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc
Confidence 0012233459999999999999999999999999999988744 8888999
Q ss_pred CCCcEEEEEc----CCEEEEEeCCCeEEEEEcCCCcceE----Eeccc--cCccceEEEeeeeCCCCCcEEEEEeCCCeE
Q 011711 356 TDAPMSLLCW----DQYLLSCSLDNTIKVWIMTEEGNLE----VAYTH--NEDHGVLALGGLNDPDGNPVLICSCNDDSV 425 (479)
Q Consensus 356 ~~~v~~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v 425 (479)
...|.++.+. +++|++++.||.|++||+.+.+... .+..+ ...+..+. ++|+++ +|++++.||.|
T Consensus 285 ~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~----~s~~~~-~l~s~~~dg~i 359 (366)
T 3k26_A 285 QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTS----FSRDSS-ILIAVCDDASI 359 (366)
T ss_dssp SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEE----ECTTSS-EEEEEETTSEE
T ss_pred CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEE----eCCCCC-eEEEEeCCCEE
Confidence 9888777665 7899999999999999999876432 44444 34444444 469988 89999999999
Q ss_pred EEeecCC
Q 011711 426 HLYELPS 432 (479)
Q Consensus 426 ~iwd~~~ 432 (479)
++||+.+
T Consensus 360 ~iwd~~~ 366 (366)
T 3k26_A 360 WRWDRLR 366 (366)
T ss_dssp EEEEC--
T ss_pred EEEEecC
Confidence 9999853
No 72
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-31 Score=250.51 Aligned_cols=285 Identities=16% Similarity=0.190 Sum_probs=229.8
Q ss_pred eeeeecCCCeEEEe-ccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 011711 145 RTLERTTPKNVCYH-WLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHT 223 (479)
Q Consensus 145 ~~~~~~~~~~~c~~-~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~ 223 (479)
..+.+|.....|.. +....+++|+.|+.|++||+.++ +....+..|...|.+++|+|++++|++++.||.|++|++..
T Consensus 12 ~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 90 (313)
T 3odt_A 12 ATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQ-WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFA 90 (313)
T ss_dssp EEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSS-EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTC
T ss_pred HHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCC-EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeee
Confidence 45556665655544 45568999999999999999887 78888999999999999999999999999999999999876
Q ss_pred C---ceEEEEe-cCCceeEEEeCCCEEEEE-cCCeEEEEEcCCCceEEecCCCccEEEEEEcC---CEEEEEeCCCcEEE
Q 011711 224 G---QSASVIN-LGAEVGSLICEGPWVFVG-MPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN---EMLFAGAQDGNILV 295 (479)
Q Consensus 224 ~---~~~~~~~-~~~~~~~~~~~~~~l~~~-~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~g~~dg~i~i 295 (479)
. +....+. +...+.++.+++.+++++ .++.|++|| ..........|...+.++.+.+ +.+++++.||.|++
T Consensus 91 ~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 169 (313)
T 3odt_A 91 TSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKL 169 (313)
T ss_dssp CTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEE
Confidence 5 3344443 456677777777777654 789999999 4444556778999999999865 39999999999999
Q ss_pred EEccCCCCCcccceeeecC-CCCCeEEEEEc-CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc-CCEEEEE
Q 011711 296 WKGIPNTQNPFQLAALLKG-HTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-DQYLLSC 372 (479)
Q Consensus 296 wd~~~~~~~~~~~~~~~~~-h~~~i~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~ 372 (479)
||... ....+.. |...|.+++++ ...+++++.||.|++||+++++++..+..|...+.++.+. +..|+++
T Consensus 170 ~d~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 242 (313)
T 3odt_A 170 WQNDK-------VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSC 242 (313)
T ss_dssp EETTE-------EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEE
T ss_pred EecCc-------eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEE
Confidence 99332 3455555 89999999997 5559999999999999999999999999999999999998 3379999
Q ss_pred eCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCc
Q 011711 373 SLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRRE 444 (479)
Q Consensus 373 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 444 (479)
+.||.|++||+++++....+..+...+..+.+ +|+++ +++++.|+.|++||+++++..........
T Consensus 243 ~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~----~~~~~--~~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 308 (313)
T 3odt_A 243 GEDRTVRIWSKENGSLKQVITLPAISIWSVDC----MSNGD--IIVGSSDNLVRIFSQEKSRWASEDEIKGE 308 (313)
T ss_dssp ETTSEEEEECTTTCCEEEEEECSSSCEEEEEE----CTTSC--EEEEETTSCEEEEESCGGGCCC-------
T ss_pred ecCCEEEEEECCCCceeEEEeccCceEEEEEE----ccCCC--EEEEeCCCcEEEEeCCCCceeehhhhhhh
Confidence 99999999999999888888777766555555 58887 45688999999999998877665544333
No 73
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.1e-32 Score=259.87 Aligned_cols=284 Identities=13% Similarity=0.163 Sum_probs=219.2
Q ss_pred eeeeecCCCeEEEecc--CCee-EeCCC---CCeEEEeecCCCceeeEEEecccccEEEEEeCCC---CCEEEEEeCCCc
Q 011711 145 RTLERTTPKNVCYHWL--SGNC-VKGDE---CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLR---SDKLYSGSRDGT 215 (479)
Q Consensus 145 ~~~~~~~~~~~c~~~~--~~~~-~~g~~---d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~---~~~l~s~s~Dg~ 215 (479)
.+..+|.....|..+. ...+ ++|+. |+.|++||+.++........+|...|.+++|+|+ +++|++++.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 3444565555555544 4344 56665 9999999999874333444589999999999998 699999999999
Q ss_pred EEEEECCCCc-eEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEc------CC--EEEE
Q 011711 216 VQLWDCHTGQ-SASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVA------NE--MLFA 286 (479)
Q Consensus 216 v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~------~~--~l~~ 286 (479)
|++||+.+++ .+.. +.+|...|.++.+. ++ .|++
T Consensus 92 i~iwd~~~~~~~~~~-------------------------------------~~~~~~~v~~~~~~~~~~~s~~~~~l~~ 134 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYS-------------------------------------VKGHKEIINAIDGIGGLGIGEGAPEIVT 134 (357)
T ss_dssp EEEECTTSCSSCSEE-------------------------------------ECCCSSCEEEEEEESGGGCC-CCCEEEE
T ss_pred EEEEeCCCCCccEEE-------------------------------------EEecccceEEEeeccccccCCCccEEEE
Confidence 9999999876 4433 34688888988653 44 9999
Q ss_pred EeCCCcEEEEEccCCCCCcccceeeecCCCC----CeEEEEE------cCCEEEEEeCCCeEEEEECCCCcEEEEEeCCC
Q 011711 287 GAQDGNILVWKGIPNTQNPFQLAALLKGHTR----PVTCLAV------GGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT 356 (479)
Q Consensus 287 g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~----~i~~l~~------~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~ 356 (479)
++.||.|++||+.++.. ....+..|.. .|.++.+ +++++++++.||.|++||+++++.... ..|.
T Consensus 135 ~~~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~ 209 (357)
T 3i2n_A 135 GSRDGTVKVWDPRQKDD----PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIK 209 (357)
T ss_dssp EETTSCEEEECTTSCSS----CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECS
T ss_pred EeCCCeEEEEeCCCCCC----cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCC
Confidence 99999999999988652 2444544443 8999984 388999999999999999999887544 5688
Q ss_pred CCcEEEEEc-----CCEEEEEeCCCeEEEEEcCCCcceEEec-----cccCccceEEEeeeeCCCCCcEEEEEeCCCeEE
Q 011711 357 DAPMSLLCW-----DQYLLSCSLDNTIKVWIMTEEGNLEVAY-----THNEDHGVLALGGLNDPDGNPVLICSCNDDSVH 426 (479)
Q Consensus 357 ~~v~~~~~~-----~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~ 426 (479)
..+.++.+. +++|++++.||.|++||+++......+. .+...+..+.+ +|+++.++++++.||.|+
T Consensus 210 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~l~~~~~dg~i~ 285 (357)
T 3i2n_A 210 NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRH----LPQNRELFLTAGGAGGLH 285 (357)
T ss_dssp SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEE----ETTEEEEEEEEETTSEEE
T ss_pred CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEE----CCCCCcEEEEEeCCCcEE
Confidence 899999986 4899999999999999998766554443 56665555555 588877899999999999
Q ss_pred EeecCCCce-------------------eeeee-ccCceEEEEECCCc-eEE-EEcCCCcEEEEEeccCC
Q 011711 427 LYELPSFME-------------------RGRIF-SRREVRVIETGPDG-LFF-TGDGTGMLSVWKILAKP 474 (479)
Q Consensus 427 iwd~~~~~~-------------------~~~~~-~~~~v~~l~~s~~g-~l~-sg~~dg~v~vw~~~~~~ 474 (479)
+||+++... +..+. |...|.+++|+|++ .|+ +++.||.|++|++.+.+
T Consensus 286 iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 286 LWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred EeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 999986432 22332 47789999999999 777 89999999999998653
No 74
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.9e-33 Score=268.08 Aligned_cols=294 Identities=13% Similarity=0.037 Sum_probs=225.8
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCC--eEEEeccCCee
Q 011711 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK--NVCYHWLSGNC 164 (479)
Q Consensus 87 ~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~c~~~~~~~~ 164 (479)
..|..+|.+++|+|+|.++++|+.||.+++|+..+... .....+..+... .+++.+....+
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-----------------~~~~~~~~h~~~v~~~~~~~~~~~l 67 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-----------------VQVHELKEHNGQVTGVDWAPDSNRI 67 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----------------EEEEEEECCSSCEEEEEEETTTTEE
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----------------EeeeeecCCCCcccEEEEeCCCCEE
Confidence 45889999999999999999999999999998665320 012223333333 44555667789
Q ss_pred EeCCCCCeEEEeecCCCc-eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCC
Q 011711 165 VKGDECRFWHSWFCGEGF-TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEG 243 (479)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~-~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 243 (479)
++++.|+.|++||+.++. .....+.+|...|.+++|+|++++|++++.|+.|++||+..++......
T Consensus 68 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~------------ 135 (372)
T 1k8k_C 68 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK------------ 135 (372)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE------------
T ss_pred EEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee------------
Confidence 999999999999998772 2233457899999999999999999999999999999998776322111
Q ss_pred CEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCC-------------Ccccc
Q 011711 244 PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQ-------------NPFQL 308 (479)
Q Consensus 244 ~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~-------------~~~~~ 308 (479)
.....|...|.+++|+++ +|++++.||.|++||+..... ...+.
T Consensus 136 ---------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 194 (372)
T 1k8k_C 136 ---------------------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL 194 (372)
T ss_dssp ---------------------EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred ---------------------eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhh
Confidence 112457889999999987 899999999999999753210 01245
Q ss_pred eeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcC
Q 011711 309 AALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMT 384 (479)
Q Consensus 309 ~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~ 384 (479)
...+..|...|.+++|+ +++|++++.|+.|++||+++++++..+..|...+.++.+. +.+++++ .|+.|++|++.
T Consensus 195 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~ 273 (372)
T 1k8k_C 195 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYD 273 (372)
T ss_dssp EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred eEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEcc
Confidence 66778999999999996 7899999999999999999999999999999999999987 4555555 99999999998
Q ss_pred C--Ccc--------------------------------e------EEe-ccccCccceEEEeeeeCCCC---CcEEEEEe
Q 011711 385 E--EGN--------------------------------L------EVA-YTHNEDHGVLALGGLNDPDG---NPVLICSC 420 (479)
Q Consensus 385 ~--~~~--------------------------------~------~~~-~~~~~~~~~~~~~~~~~~~~---~~~l~s~~ 420 (479)
+ +.- . ..+ ..|...+..+.+. +++| . +|++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~g~~~~-~l~s~~ 349 (372)
T 1k8k_C 274 SAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVL---SGGKAKCS-QFCTTG 349 (372)
T ss_dssp TTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEE---ESTTTSCS-EEEEEE
T ss_pred CcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEe---cCCCccee-eEEEec
Confidence 7 310 0 111 2455554444432 3555 5 899999
Q ss_pred CCCeEEEeecCCCce
Q 011711 421 NDDSVHLYELPSFME 435 (479)
Q Consensus 421 ~dg~v~iwd~~~~~~ 435 (479)
.||.|++||+.+++.
T Consensus 350 ~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 350 MDGGMSIWDVRSLES 364 (372)
T ss_dssp TTSEEEEEEHHHHHH
T ss_pred CCCceEEEEecChhH
Confidence 999999999977544
No 75
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.8e-33 Score=274.41 Aligned_cols=295 Identities=14% Similarity=0.083 Sum_probs=232.6
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEE--Eecc--
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVC--YHWL-- 160 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c--~~~~-- 160 (479)
.+.+|...|++++|+| .++++|+.||+|+||+..+.....+ ......+..+.....| +.+.
T Consensus 11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~-------------~~~~~~~~~h~~~v~~~~~~~~~~ 75 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP-------------KDKSYSHFVHKSGLHHVDVLQAIE 75 (397)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG-------------GGGEEEEECCTTCEEEEEEEEEEE
T ss_pred hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccC-------------CCcceEEecCCCcEEEEEEecccc
Confidence 4678999999999999 7999999999999998776542110 0112333344444444 4555
Q ss_pred --C---CeeEeCCCCCeEEEeecCCCcee-----eEEEecc-----cccEEEEEeC----CCCCE-EEEEeCCCcEEEEE
Q 011711 161 --S---GNCVKGDECRFWHSWFCGEGFTM-----LAKLEGH-----KKAVSGIALP----LRSDK-LYSGSRDGTVQLWD 220 (479)
Q Consensus 161 --~---~~~~~g~~d~~i~vw~~~~~~~~-----~~~~~~H-----~~~V~~l~~s----~~~~~-l~s~s~Dg~v~vwd 220 (479)
+ ..+++++.|+.|++|++.++ +. +..+.+| ...|.+++|+ |++++ |++++.||.|++||
T Consensus 76 ~~g~~~~~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 154 (397)
T 1sq9_A 76 RDAFELCLVATTSFSGDLLFYRITRE-DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK 154 (397)
T ss_dssp TTTEEEEEEEEEETTSCEEEEEEEEC-TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred cCCccccEEEEEcCCCCEEEEEccCC-cccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEe
Confidence 6 68999999999999999877 44 7888899 6999999999 99999 99999999999999
Q ss_pred CCC------CceEE-----EEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC-EEEEEe
Q 011711 221 CHT------GQSAS-----VINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGA 288 (479)
Q Consensus 221 ~~~------~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~ 288 (479)
+.+ ++.+. .+... ......|...|.+++|+++ .+++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~i~~~~~~~~~~l~~~~ 204 (397)
T 1sq9_A 155 FHPFADESNSLTLNWSPTLELQGT------------------------------VESPMTPSQFATSVDISERGLIATGF 204 (397)
T ss_dssp EESSSSHHHHTTTCCCCEEEEEEE------------------------------ECCSSSSCCCCCEEEECTTSEEEEEC
T ss_pred CCccccccccceeeccCcceeeee------------------------------eccccCCCCCceEEEECCCceEEEEe
Confidence 987 44332 11100 0001357788999999987 999999
Q ss_pred CCCcEEEEEccCCCCCcccceeeecC---C---CCCeEEEEEc--CCEEEEEeCC---CeEEEEECCCCcEEEEEeC---
Q 011711 289 QDGNILVWKGIPNTQNPFQLAALLKG---H---TRPVTCLAVG--GKRLYSGSMD---NTIRVWDLDTLEAVMTLNG--- 354 (479)
Q Consensus 289 ~dg~i~iwd~~~~~~~~~~~~~~~~~---h---~~~i~~l~~~--~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~--- 354 (479)
.||.|++||+.+.. ....+.. | ...|.+++|+ +.+|++++.| |.|++||+++++.+..+..
T Consensus 205 ~dg~i~i~d~~~~~-----~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~ 279 (397)
T 1sq9_A 205 NNGTVQISELSTLR-----PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH 279 (397)
T ss_dssp TTSEEEEEETTTTE-----EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--
T ss_pred CCCcEEEEECCCCc-----eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcc
Confidence 99999999998753 4666777 8 9999999996 8899999999 9999999999999999998
Q ss_pred ----------CCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEec------cc---------------cCccce
Q 011711 355 ----------HTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAY------TH---------------NEDHGV 401 (479)
Q Consensus 355 ----------h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~------~~---------------~~~~~~ 401 (479)
|...|.++.+. +++|++++.||.|++||+++.+.+..+. .+ ...+..
T Consensus 280 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~ 359 (397)
T 1sq9_A 280 SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 359 (397)
T ss_dssp ------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEE
T ss_pred cccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeE
Confidence 99999999998 7899999999999999999998888777 55 555544
Q ss_pred EEEeeeeCCCCC---------cEEEEEeCCCeEEEeecCCCc
Q 011711 402 LALGGLNDPDGN---------PVLICSCNDDSVHLYELPSFM 434 (479)
Q Consensus 402 ~~~~~~~~~~~~---------~~l~s~~~dg~v~iwd~~~~~ 434 (479)
+.+ +|+++ .+|++++.|+.|++||+++++
T Consensus 360 ~~~----~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 360 VKF----LKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEE----ECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EEe----ccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 444 58872 389999999999999998753
No 76
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.5e-31 Score=282.47 Aligned_cols=318 Identities=19% Similarity=0.227 Sum_probs=257.3
Q ss_pred eeeeeecCCCeEE--EeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 011711 144 KRTLERTTPKNVC--YHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDC 221 (479)
Q Consensus 144 ~~~~~~~~~~~~c--~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~ 221 (479)
.+.+.+|.....| +++.+..+++|+.|+.|++||+.++ +.+..+.+|.+.|++++|+|++++|++++.||.|++||+
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ-VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC-ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 3455566555554 5555668999999999999999988 889999999999999999999999999999999999999
Q ss_pred CCCceEEEEec-CCceeEEEe--CCCEEEE-EcCCeEEEEEcCCCce--EEecCCCccEEEEEEcC-C--EEEEEeCCCc
Q 011711 222 HTGQSASVINL-GAEVGSLIC--EGPWVFV-GMPNVVKAWHIESSAE--FSLDGPVGEVYSMVVAN-E--MLFAGAQDGN 292 (479)
Q Consensus 222 ~~~~~~~~~~~-~~~~~~~~~--~~~~l~~-~~~~~i~v~~~~~~~~--~~~~~~~~~v~~~~~~~-~--~l~~g~~dg~ 292 (479)
.+++.+..+.. ...+.++.+ +++++++ +.++.|++|++.++.. ..+.+|...|.+++|+| + .+++++.||.
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 164 (814)
T 3mkq_A 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT 164 (814)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred CCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCe
Confidence 99999988874 455666554 6776665 4789999999988733 35678999999999998 4 8999999999
Q ss_pred EEEEEccCCCCCcccceeeec-CCCCCeEEEEE----cCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--
Q 011711 293 ILVWKGIPNTQNPFQLAALLK-GHTRPVTCLAV----GGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-- 365 (479)
Q Consensus 293 i~iwd~~~~~~~~~~~~~~~~-~h~~~i~~l~~----~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~-- 365 (479)
|++||+..... ...+. .+...+.+++| ++.++++++.||.|++||+++++.+..+.+|...|.++.++
T Consensus 165 v~vwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~ 239 (814)
T 3mkq_A 165 VKVWSLGQSTP-----NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239 (814)
T ss_dssp EEEEETTCSSC-----SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred EEEEECCCCcc-----eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 99999977643 33333 44588999999 47899999999999999999999999999999999999988
Q ss_pred CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-----
Q 011711 366 DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF----- 440 (479)
Q Consensus 366 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~----- 440 (479)
++++++++.||.|++||+.+......+..+...+..+.+ +|++..++++.+.++.+.+|++........+.
T Consensus 240 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 315 (814)
T 3mkq_A 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIAT----HPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKL 315 (814)
T ss_dssp SSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEE----CTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEE----ccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCE
Confidence 679999999999999999998888877777666555554 58887654444557788889876532211110
Q ss_pred ---------------------------------------ccCceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 441 ---------------------------------------SRREVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 441 ---------------------------------------~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
+...+.+++|+|+| .+++++ ||.+.+|++..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 316 VWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALA 386 (814)
T ss_dssp EEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred EEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcc
Confidence 12357899999999 777777 99999999754
No 77
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=6.1e-33 Score=266.31 Aligned_cols=285 Identities=16% Similarity=0.149 Sum_probs=224.5
Q ss_pred CCCCCCCCCCCCCCCCCc-eeccCCCC---CCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEE--Ee
Q 011711 85 PVSNHKKSPPSYNCPKNN-VRVSSGSE---EGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVC--YH 158 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g-~~las~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c--~~ 158 (479)
.+.+|...|.+++|+|+| .++++|+. ||+++||+..+.... ......+.....| +.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~------------------~~~~~~~~~~v~~~~~~ 74 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK------------------LLREIEKAKPIKCGTFG 74 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE------------------EEEEEEESSCEEEEECT
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc------------------ceeeecccCcEEEEEEc
Confidence 347799999999999999 56667776 999999987653320 0111133334444 44
Q ss_pred cc---CCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEE------EeCCCCCEEEEEeCCCcEEEEECCCCc-eEE
Q 011711 159 WL---SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGI------ALPLRSDKLYSGSRDGTVQLWDCHTGQ-SAS 228 (479)
Q Consensus 159 ~~---~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l------~~s~~~~~l~s~s~Dg~v~vwd~~~~~-~~~ 228 (479)
+. +..+++|+.|+.|++||+.++...+..+.+|...|.++ +|+|++++|++++.||.|++||+.+++ ...
T Consensus 75 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA 154 (357)
T ss_dssp TCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred CCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence 44 36899999999999999998844889999999999999 557899999999999999999999987 666
Q ss_pred EEecC-----CceeEEE------eCCCEEEEE-cCCeEEEEEcCCCceEEecCCCccEEEEEEcC---C--EEEEEeCCC
Q 011711 229 VINLG-----AEVGSLI------CEGPWVFVG-MPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN---E--MLFAGAQDG 291 (479)
Q Consensus 229 ~~~~~-----~~~~~~~------~~~~~l~~~-~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~---~--~l~~g~~dg 291 (479)
.+... ..+.++. +++.+++++ .++.|++||+++++......+...|.+++|++ + .+++++.||
T Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 234 (357)
T 3i2n_A 155 NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEG 234 (357)
T ss_dssp EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred eccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCC
Confidence 66542 2455555 577777765 67999999999999888888999999999997 4 999999999
Q ss_pred cEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CC-EEEEEeCCCeEEEEECCCC-------------------cEE
Q 011711 292 NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GK-RLYSGSMDNTIRVWDLDTL-------------------EAV 349 (479)
Q Consensus 292 ~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~-~l~sgs~dg~I~iwd~~~~-------------------~~~ 349 (479)
.|++||+.+...........+.+|...|.+++|+ +. ++++++.||.|++||++++ +.+
T Consensus 235 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~ 314 (357)
T 3i2n_A 235 KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLL 314 (357)
T ss_dssp EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEE
T ss_pred eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccccccee
Confidence 9999999876432111122345899999999997 44 7999999999999999753 467
Q ss_pred EEEeCCCCCcEEEEEc--CCEEE-EEeCCCeEEEEEcCCCc
Q 011711 350 MTLNGHTDAPMSLLCW--DQYLL-SCSLDNTIKVWIMTEEG 387 (479)
Q Consensus 350 ~~~~~h~~~v~~~~~~--~~~l~-s~s~dg~i~iwd~~~~~ 387 (479)
..+..|...|.++.++ +++|+ +++.||.|++||+.+..
T Consensus 315 ~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 315 QNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred eccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 8889999999999998 56777 89999999999998654
No 78
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-31 Score=254.51 Aligned_cols=284 Identities=14% Similarity=0.164 Sum_probs=240.6
Q ss_pred eeeeecCCCeEEE--eccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 011711 145 RTLERTTPKNVCY--HWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCH 222 (479)
Q Consensus 145 ~~~~~~~~~~~c~--~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~ 222 (479)
..+.+|.....|. .+.+..+++|+.|+.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS 104 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 4566676666554 445668999999999999999988 8889999999999999999999999999999999999999
Q ss_pred CCceEEEEecCCceeEEEe--CCCEEEEE-cC-----CeEEEEEcCCCce------------EEecCCCc--cEEEEEEc
Q 011711 223 TGQSASVINLGAEVGSLIC--EGPWVFVG-MP-----NVVKAWHIESSAE------------FSLDGPVG--EVYSMVVA 280 (479)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~--~~~~l~~~-~~-----~~i~v~~~~~~~~------------~~~~~~~~--~v~~~~~~ 280 (479)
+++.+..+.....+.++.+ ++.+++++ .+ +.|++||+..... .....+.. .+.+++++
T Consensus 105 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (369)
T 3zwl_B 105 NGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS 184 (369)
T ss_dssp TCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC
T ss_pred CCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc
Confidence 9999999998888777765 67777765 55 8999999876542 23344555 89999999
Q ss_pred CC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCC
Q 011711 281 NE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT 356 (479)
Q Consensus 281 ~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~ 356 (479)
++ .|++++.||.|++||+.+.. +....+..|...|.+++|+ +++|++++.|+.|++||+++++.+..+. +.
T Consensus 185 ~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~ 259 (369)
T 3zwl_B 185 TKGKYIIAGHKDGKISKYDVSNNY----EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TD 259 (369)
T ss_dssp GGGCEEEEEETTSEEEEEETTTTT----EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CS
T ss_pred CCCCEEEEEcCCCEEEEEECCCCc----EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CC
Confidence 87 99999999999999998742 3467788899999999996 8899999999999999999999999888 67
Q ss_pred CCcEEEEEc--CCEEEEEeCCC--------------eEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEe
Q 011711 357 DAPMSLLCW--DQYLLSCSLDN--------------TIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC 420 (479)
Q Consensus 357 ~~v~~~~~~--~~~l~s~s~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 420 (479)
..+..+.+. ++++++++.++ .+++||..+.+.+..+..|...+..+.+ +|+++ +|++++
T Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~----s~~~~-~l~s~~ 334 (369)
T 3zwl_B 260 CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAI----SPQGT-SYASGG 334 (369)
T ss_dssp SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEE----CTTSS-EEEEEE
T ss_pred CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEE----CCCCC-EEEEEc
Confidence 778888887 78999999988 8999999999988888888777666665 59988 899999
Q ss_pred CCCeEEEeecCCCceeeee
Q 011711 421 NDDSVHLYELPSFMERGRI 439 (479)
Q Consensus 421 ~dg~v~iwd~~~~~~~~~~ 439 (479)
.||.|++|+++.+.....+
T Consensus 335 ~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 335 EDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp TTSEEEEEEECHHHHTCCC
T ss_pred CCCeEEEEECccccchhHH
Confidence 9999999999876544433
No 79
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.6e-31 Score=255.80 Aligned_cols=250 Identities=18% Similarity=0.292 Sum_probs=200.5
Q ss_pred eeeEEEecccccEEEEEe-----CC-CCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEE
Q 011711 183 TMLAKLEGHKKAVSGIAL-----PL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKA 256 (479)
Q Consensus 183 ~~~~~~~~H~~~V~~l~~-----s~-~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v 256 (479)
++...+++|.+.|++++| ++ ++++|+||+.|++|++||+.+++......
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~------------------------- 66 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFG------------------------- 66 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSE-------------------------
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccc-------------------------
Confidence 567789999999999999 66 89999999999999999987653210000
Q ss_pred EEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEE
Q 011711 257 WHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSG 332 (479)
Q Consensus 257 ~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sg 332 (479)
.....+.+|...|.+++++++ ++++|+.|+.|++||+.++. ....+.+|...|.+++|+ +++|+++
T Consensus 67 -----~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~-----~~~~~~~h~~~v~~v~~sp~~~~l~s~ 136 (343)
T 2xzm_R 67 -----IPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT-----TYKRFVGHQSEVYSVAFSPDNRQILSA 136 (343)
T ss_dssp -----EEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC-----EEEEEECCCSCEEEEEECSSTTEEEEE
T ss_pred -----cccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----EEEEEcCCCCcEEEEEECCCCCEEEEE
Confidence 001245689999999999987 89999999999999998764 367788999999999997 8899999
Q ss_pred eCCCeEEEEECCCCcEEEEEe---CCCCCcEEEEEcC------------CEEEEEeCCCeEEEEEcCCCcceEEeccccC
Q 011711 333 SMDNTIRVWDLDTLEAVMTLN---GHTDAPMSLLCWD------------QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNE 397 (479)
Q Consensus 333 s~dg~I~iwd~~~~~~~~~~~---~h~~~v~~~~~~~------------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 397 (479)
+.|++|++||+.. +...... .|...+.++.+.+ .++++++.|+.|++||. .......+..|..
T Consensus 137 ~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~ 214 (343)
T 2xzm_R 137 GAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHES 214 (343)
T ss_dssp ETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSS
T ss_pred cCCCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccc
Confidence 9999999999984 4444443 6888899999873 58999999999999994 4455556666766
Q ss_pred ccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC-CCceeeeeeccCceEEEEECCCceEEEEcCCCcEEEEEeccCC
Q 011711 398 DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP-SFMERGRIFSRREVRVIETGPDGLFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~~~ 474 (479)
.+..+.+ +|+|+ +|++++.|+.|++||+. .......+.+...|.+++|+|++.+++++.|+.|++|++.+.+
T Consensus 215 ~v~~~~~----s~~g~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 215 NVNHLSI----SPNGK-YIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQS 287 (343)
T ss_dssp CEEEEEE----CTTSS-EEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCC
T ss_pred cceEEEE----CCCCC-EEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCC
Confidence 6655555 69998 89999999999999994 4444445556778999999999955556678899999987654
No 80
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.4e-31 Score=254.50 Aligned_cols=283 Identities=17% Similarity=0.207 Sum_probs=232.8
Q ss_pred ecCCCeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEE
Q 011711 149 RTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSAS 228 (479)
Q Consensus 149 ~~~~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~ 228 (479)
......+++.+.+..++.+..++.+..|......+.+. ..+|.+.|++++|+|++++|++++ ||.|++||+.+++...
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQIN-TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEE-EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCccccce-eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 33445778888888888888777777777666534444 448999999999999999999999 9999999998765322
Q ss_pred EEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcc
Q 011711 229 VINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPF 306 (479)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~ 306 (479)
.+. ......|...|.+++|+++ .|++++.||.|++||+.++..
T Consensus 87 ~~~--------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--- 131 (337)
T 1gxr_A 87 PVS--------------------------------QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP--- 131 (337)
T ss_dssp CSE--------------------------------EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----
T ss_pred eee--------------------------------cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc---
Confidence 111 1122357889999999987 899999999999999987642
Q ss_pred cceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEE
Q 011711 307 QLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWI 382 (479)
Q Consensus 307 ~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd 382 (479)
.....+..|...|.+++|+ ++++++++.||.|++||+++++.+..+..|...+.++.+. +++|++++.||.|++||
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d 211 (337)
T 1gxr_A 132 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211 (337)
T ss_dssp EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEE
Confidence 3456678899999999996 7899999999999999999999999999999999999997 67999999999999999
Q ss_pred cCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcC
Q 011711 383 MTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDG 461 (479)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~ 461 (479)
+++.+.+.... +...+..+ .++|+++ ++++++.|+.|++||+.+.+......+...|.+++|+|++ +|++++.
T Consensus 212 ~~~~~~~~~~~-~~~~v~~~----~~s~~~~-~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 285 (337)
T 1gxr_A 212 LREGRQLQQHD-FTSQIFSL----GYCPTGE-WLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK 285 (337)
T ss_dssp TTTTEEEEEEE-CSSCEEEE----EECTTSS-EEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCceEeeec-CCCceEEE----EECCCCC-EEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecC
Confidence 99887665543 34444333 4469988 8888999999999999998877666678899999999999 9999999
Q ss_pred CCcEEEEEeccCC
Q 011711 462 TGMLSVWKILAKP 474 (479)
Q Consensus 462 dg~v~vw~~~~~~ 474 (479)
||.|++|++..++
T Consensus 286 dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 286 DNLLNAWRTPYGA 298 (337)
T ss_dssp TSEEEEEETTTCC
T ss_pred CCcEEEEECCCCe
Confidence 9999999998754
No 81
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.9e-33 Score=265.82 Aligned_cols=247 Identities=21% Similarity=0.267 Sum_probs=189.4
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCee
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 164 (479)
.+.+|++.|++++|+|+|++||+|+.||+++||+..+..
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~----------------------------------------- 46 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG----------------------------------------- 46 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE-----------------------------------------
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC-----------------------------------------
Confidence 456889999999999999999999888888888532110
Q ss_pred EeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCC--CCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeC
Q 011711 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL--RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICE 242 (479)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~--~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 242 (479)
...+..+.+|.+.|.+++|++ ++++|+||+.|++|++||+++++....
T Consensus 47 -----------------~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~------------- 96 (316)
T 3bg1_A 47 -----------------QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKS------------- 96 (316)
T ss_dssp -----------------EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEE-------------
T ss_pred -----------------cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEE-------------
Confidence 024567889999999999976 489999999999999999987642211
Q ss_pred CCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC----EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCC
Q 011711 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (479)
Q Consensus 243 ~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~ 318 (479)
..+.+|...|.+++|+|+ +|++|+.||.|++||+..... ......+.+|...
T Consensus 97 ----------------------~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~--~~~~~~~~~h~~~ 152 (316)
T 3bg1_A 97 ----------------------HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ--WEVKKINNAHTIG 152 (316)
T ss_dssp ----------------------EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC--EEECCBTTSSSSC
T ss_pred ----------------------EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC--cceeeeeccccCC
Confidence 123468889999999875 899999999999999976532 2334556789999
Q ss_pred eEEEEEcC-------------------CEEEEEeCCCeEEEEECCCC---cEEEEEeCCCCCcEEEEEcC------CEEE
Q 011711 319 VTCLAVGG-------------------KRLYSGSMDNTIRVWDLDTL---EAVMTLNGHTDAPMSLLCWD------QYLL 370 (479)
Q Consensus 319 i~~l~~~~-------------------~~l~sgs~dg~I~iwd~~~~---~~~~~~~~h~~~v~~~~~~~------~~l~ 370 (479)
|.+++|+. .+|++|+.|++|++||+++. +++.++.+|...|.++.+.+ ++|+
T Consensus 153 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~la 232 (316)
T 3bg1_A 153 CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIA 232 (316)
T ss_dssp BCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEE
T ss_pred cceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEE
Confidence 99999862 58999999999999999865 46778899999999999973 6899
Q ss_pred EEeCCCeEEEEEcCCCc----ceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC
Q 011711 371 SCSLDNTIKVWIMTEEG----NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (479)
Q Consensus 371 s~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 431 (479)
+++.|++|++||+++.. ....+..+...+.. +.++|+++ +|++++.|+.|++|+..
T Consensus 233 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~----v~~sp~g~-~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 233 SCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWH----VSWSITAN-ILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEE----EEECTTTC-CEEEEESSSCEEEEEEC
T ss_pred EEcCCCeEEEEEccCccccchhhhhhhcCCCcEEE----EEEcCCCC-EEEEEcCCCeEEEEEEC
Confidence 99999999999987631 12233344444433 34468887 78888899999999875
No 82
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-32 Score=267.63 Aligned_cols=279 Identities=15% Similarity=0.191 Sum_probs=226.0
Q ss_pred eEEEeccCC-eeEeC----------CCCCeEEEeecCCCc--eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 011711 154 NVCYHWLSG-NCVKG----------DECRFWHSWFCGEGF--TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWD 220 (479)
Q Consensus 154 ~~c~~~~~~-~~~~g----------~~d~~i~vw~~~~~~--~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd 220 (479)
.+++.+... .+++| +.|+.|++|++.++. +.+..+ .|...|++++|+|++++|++++.||.|++||
T Consensus 17 ~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~ 95 (416)
T 2pm9_A 17 TFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYS 95 (416)
T ss_dssp BCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEEC
T ss_pred eEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEee
Confidence 344455544 67777 899999999998763 234444 6899999999999999999999999999999
Q ss_pred CCCC----ceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcE
Q 011711 221 CHTG----QSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNI 293 (479)
Q Consensus 221 ~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i 293 (479)
+.+. +.. ..+..|...|.+++|+++ +|++++.||.|
T Consensus 96 ~~~~~~~~~~~-------------------------------------~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 138 (416)
T 2pm9_A 96 TNEANNAINSM-------------------------------------ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEI 138 (416)
T ss_dssp CSSTTSCCCEE-------------------------------------EECCCSSSCCCEEEECSSSTTBEEEECSSSCE
T ss_pred cccccccccch-------------------------------------hhccCCccceEEEEEcCCCCCEEEEEcCCCeE
Confidence 9872 222 234568889999999864 89999999999
Q ss_pred EEEEccCCCCCc----ccceeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEeCC------CCCcE
Q 011711 294 LVWKGIPNTQNP----FQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGH------TDAPM 360 (479)
Q Consensus 294 ~iwd~~~~~~~~----~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h------~~~v~ 360 (479)
++||+.+..... .........|...|.+++|+ +.++++++.||.|++||+++++.+..+..| ...+.
T Consensus 139 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 218 (416)
T 2pm9_A 139 FIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLS 218 (416)
T ss_dssp EBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEE
T ss_pred EEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceE
Confidence 999998765110 11123356799999999996 578999999999999999999999999877 78899
Q ss_pred EEEEc--C-CEEEEEeCCC---eEEEEEcCCC-cceEEec-cccCccceEEEeeeeCC-CCCcEEEEEeCCCeEEEeecC
Q 011711 361 SLLCW--D-QYLLSCSLDN---TIKVWIMTEE-GNLEVAY-THNEDHGVLALGGLNDP-DGNPVLICSCNDDSVHLYELP 431 (479)
Q Consensus 361 ~~~~~--~-~~l~s~s~dg---~i~iwd~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~l~s~~~dg~v~iwd~~ 431 (479)
++.++ + .++++++.|+ .|++||+++. .....+. .|...+..+.+ +| +++ +|++++.|+.|++||+.
T Consensus 219 ~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~----s~~~~~-~l~s~~~dg~v~~wd~~ 293 (416)
T 2pm9_A 219 VVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDW----CHQDEH-LLLSSGRDNTVLLWNPE 293 (416)
T ss_dssp EEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEE----CSSCSS-CEEEEESSSEEEEECSS
T ss_pred EEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEe----CCCCCC-eEEEEeCCCCEEEeeCC
Confidence 99998 3 5899999999 9999999986 4444444 56665555554 58 666 89999999999999999
Q ss_pred CCceeeeee-ccCceEEEEECCCc--eEEEEcCCCcEEEEEeccCCC
Q 011711 432 SFMERGRIF-SRREVRVIETGPDG--LFFTGDGTGMLSVWKILAKPN 475 (479)
Q Consensus 432 ~~~~~~~~~-~~~~v~~l~~s~~g--~l~sg~~dg~v~vw~~~~~~~ 475 (479)
+++.+..+. |...|.+++|+|++ +|++++.||.|++|++.....
T Consensus 294 ~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 294 SAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp SCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred CCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 999888876 47889999999987 899999999999999987653
No 83
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.6e-32 Score=262.70 Aligned_cols=285 Identities=12% Similarity=0.119 Sum_probs=217.4
Q ss_pred CCCCCCCCCCCCCCCCC---ceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccC
Q 011711 85 PVSNHKKSPPSYNCPKN---NVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS 161 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~---g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 161 (479)
.+.+|...|++++|+|+ |.+|++|+.||+++||+..+.
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~--------------------------------------- 74 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS--------------------------------------- 74 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTT---------------------------------------
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCC---------------------------------------
Confidence 45788888888888888 588888877777777743321
Q ss_pred CeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEe
Q 011711 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 241 (479)
+......+.+|...|++++|+|++++|++++.||.|++||+.+++.....
T Consensus 75 -------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~----------- 124 (368)
T 3mmy_A 75 -------------------GQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA----------- 124 (368)
T ss_dssp -------------------SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------
T ss_pred -------------------CceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeec-----------
Confidence 21334678889999999999999999999999999999999988755432
Q ss_pred CCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEE--cCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCC
Q 011711 242 EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVV--ANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (479)
Q Consensus 242 ~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~--~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~ 317 (479)
.|...|.+++| +++ +|++++.||.|++||+.++.. ...+..+ .
T Consensus 125 ---------------------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~-~ 171 (368)
T 3mmy_A 125 ---------------------------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP-----MMVLQLP-E 171 (368)
T ss_dssp ---------------------------ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-----SEEEECS-S
T ss_pred ---------------------------cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-----EEEEecC-C
Confidence 47788999999 666 799999999999999987653 4555554 4
Q ss_pred CeEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEe--C--CCCCcEEEEEcCC----EEEEEeCCCeEEEEEcCCC---
Q 011711 318 PVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLN--G--HTDAPMSLLCWDQ----YLLSCSLDNTIKVWIMTEE--- 386 (479)
Q Consensus 318 ~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~--h~~~v~~~~~~~~----~l~s~s~dg~i~iwd~~~~--- 386 (479)
.+.++.+....+++++.++.+++||++......... . +...+..+..... .+++++.||.|++||++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~ 251 (368)
T 3mmy_A 172 RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA 251 (368)
T ss_dssp CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH
T ss_pred CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc
Confidence 788888888899999999999999998866544332 1 2222334444433 3999999999999999887
Q ss_pred cceEEeccccCccc--------eEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec-cCceEEEEECCCc-eE
Q 011711 387 GNLEVAYTHNEDHG--------VLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS-RREVRVIETGPDG-LF 456 (479)
Q Consensus 387 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~g-~l 456 (479)
.....+..+..... ....++.++|+++ +|++++.||.|++||+.+++.+..+.. ...|.+++|+|+| +|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 330 (368)
T 3mmy_A 252 KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIF 330 (368)
T ss_dssp HHSEEEECSEEC----CCCEEECCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCE
T ss_pred ccceeeeeeecccccccccccccceEEEEEecCCC-EEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeE
Confidence 34445555443100 0123334579988 789999999999999999988887764 7889999999999 99
Q ss_pred EEEcCCCcEEEEEecc
Q 011711 457 FTGDGTGMLSVWKILA 472 (479)
Q Consensus 457 ~sg~~dg~v~vw~~~~ 472 (479)
++++.|+..+.|++-.
T Consensus 331 ~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 331 AYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEEECCCSTTCGGGCC
T ss_pred EEEecccccccccccC
Confidence 9999998666666543
No 84
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2e-32 Score=264.04 Aligned_cols=285 Identities=13% Similarity=0.062 Sum_probs=218.2
Q ss_pred CCCCCCCCCCceeccCCCCCC-------ccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCee
Q 011711 92 SPPSYNCPKNNVRVSSGSEEG-------TTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (479)
Q Consensus 92 ~i~~~~~s~~g~~las~~~dg-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 164 (479)
||++++|+|||++|++||.|. .|++|+.......... .... .....+..+....+|+.+....+
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~--~~~~-------~~~~~l~~~~~~v~s~~~~~~~~ 86 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE--QFHI-------LSEFALEDNDDSPTAIDASKGII 86 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH--HEEE-------EEEEECCTTSCCCCEEEEETTEE
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee--eeee-------eeEEEccCCCCceEEEEeCCCEE
Confidence 679999999999999987543 4899987654331000 0000 00011223333455666555444
Q ss_pred -----------EeCCCCCeEEEeecCCCceeeEEE--------ecccccEEEEEeCCCCCEEEEEe--CCCcEEEEECCC
Q 011711 165 -----------VKGDECRFWHSWFCGEGFTMLAKL--------EGHKKAVSGIALPLRSDKLYSGS--RDGTVQLWDCHT 223 (479)
Q Consensus 165 -----------~~g~~d~~i~vw~~~~~~~~~~~~--------~~H~~~V~~l~~s~~~~~l~s~s--~Dg~v~vwd~~~ 223 (479)
++|+.|+.+++|++.+....+... ..+...+.+++|+|||++|++++ .|++|+|||+++
T Consensus 87 ~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~ 166 (365)
T 4h5i_A 87 LVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSD 166 (365)
T ss_dssp EEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTT
T ss_pred EEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC
Confidence 456778999999987653333222 23445689999999999987554 789999999999
Q ss_pred CceEEEEecCCceeEEEe--CCCEEEEEcCCeEEEEEcCCCceEE---ecCCCccEEEEEEcCC--EEEEEeCCC----c
Q 011711 224 GQSASVINLGAEVGSLIC--EGPWVFVGMPNVVKAWHIESSAEFS---LDGPVGEVYSMVVANE--MLFAGAQDG----N 292 (479)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~i~v~~~~~~~~~~---~~~~~~~v~~~~~~~~--~l~~g~~dg----~ 292 (479)
++++..+.+..++.++.+ ++++++++.++.+.+|+..++.... ...|...|.+++|+|+ .+++++.|+ .
T Consensus 167 ~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~ 246 (365)
T 4h5i_A 167 LTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIV 246 (365)
T ss_dssp TEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEE
T ss_pred CcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeE
Confidence 999999988888877664 8999999999999999988887643 4568889999999988 888888877 5
Q ss_pred EEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEE-eCCCCCcEEEEEc--CC
Q 011711 293 ILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTL-NGHTDAPMSLLCW--DQ 367 (479)
Q Consensus 293 i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~h~~~v~~~~~~--~~ 367 (479)
+++|++...... ......+.+|..+|++++|+ +++|++|+.|++|+|||+++++++.++ .+|...|.+++|+ ++
T Consensus 247 i~~~~~~~~~~~-~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~ 325 (365)
T 4h5i_A 247 LTKISIKSGNTS-VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDST 325 (365)
T ss_dssp EEEEEEETTEEE-EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSC
T ss_pred Eeecccccceec-ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCC
Confidence 788887765321 22245678899999999997 899999999999999999999999986 7899999999998 78
Q ss_pred EEEEEeCCCeEEEEEcCCC
Q 011711 368 YLLSCSLDNTIKVWIMTEE 386 (479)
Q Consensus 368 ~l~s~s~dg~i~iwd~~~~ 386 (479)
+|++++.|++|+|||+...
T Consensus 326 ~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 326 YVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEETTSEEEEEECCTT
T ss_pred EEEEEeCCCeEEEEEcCCC
Confidence 9999999999999999654
No 85
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.2e-32 Score=260.48 Aligned_cols=245 Identities=18% Similarity=0.249 Sum_probs=190.3
Q ss_pred EEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceE
Q 011711 186 AKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEF 265 (479)
Q Consensus 186 ~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~ 265 (479)
..+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++.... .
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~-----------------------------------~ 51 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILI-----------------------------------A 51 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEE-----------------------------------E
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEE-----------------------------------E
Confidence 34679999999999999999999999999999999987643211 2
Q ss_pred EecCCCccEEEEEEcC----CEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc----CCEEEEEeCCCe
Q 011711 266 SLDGPVGEVYSMVVAN----EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG----GKRLYSGSMDNT 337 (479)
Q Consensus 266 ~~~~~~~~v~~~~~~~----~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~----~~~l~sgs~dg~ 337 (479)
.+.+|...|.+++|++ ++|++|+.|++|++||+.++. .+....+.+|...|.+++|+ +.+|++|+.|++
T Consensus 52 ~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~---~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~ 128 (316)
T 3bg1_A 52 DLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT---WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA 128 (316)
T ss_dssp EEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSC---CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred EEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCc---ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence 3457999999999963 499999999999999998753 23456678999999999996 568999999999
Q ss_pred EEEEECCCCcE---EEEEeCCCCCcEEEEEcC-------------------CEEEEEeCCCeEEEEEcCCCc---ceEEe
Q 011711 338 IRVWDLDTLEA---VMTLNGHTDAPMSLLCWD-------------------QYLLSCSLDNTIKVWIMTEEG---NLEVA 392 (479)
Q Consensus 338 I~iwd~~~~~~---~~~~~~h~~~v~~~~~~~-------------------~~l~s~s~dg~i~iwd~~~~~---~~~~~ 392 (479)
|++||++++.. ...+.+|...+.++.+.+ ++|++++.|+.|++||++... ....+
T Consensus 129 i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l 208 (316)
T 3bg1_A 129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL 208 (316)
T ss_dssp EEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC
T ss_pred EEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec
Confidence 99999987642 345568888888888763 589999999999999997553 33444
Q ss_pred ccccCccceEEEeeeeCCCC---CcEEEEEeCCCeEEEeecCCCc---e-eeee-eccCceEEEEECCCc-eEEEEcCCC
Q 011711 393 YTHNEDHGVLALGGLNDPDG---NPVLICSCNDDSVHLYELPSFM---E-RGRI-FSRREVRVIETGPDG-LFFTGDGTG 463 (479)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~dg~v~iwd~~~~~---~-~~~~-~~~~~v~~l~~s~~g-~l~sg~~dg 463 (479)
..|...+..+.+ +|++ ..+|++++.|++|++|++.+.. . ...+ .+...|.+++|+|++ +|++++.||
T Consensus 209 ~~h~~~V~~v~~----sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~ 284 (316)
T 3bg1_A 209 EAHSDWVRDVAW----APSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN 284 (316)
T ss_dssp BCCSSCEEEEEC----CCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSS
T ss_pred ccCCCceEEEEe----cCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCC
Confidence 556555544444 5775 2489999999999999987631 1 1112 347889999999999 999999999
Q ss_pred cEEEEEecc
Q 011711 464 MLSVWKILA 472 (479)
Q Consensus 464 ~v~vw~~~~ 472 (479)
.|++|+...
T Consensus 285 ~v~lw~~~~ 293 (316)
T 3bg1_A 285 KVTLWKESV 293 (316)
T ss_dssp CEEEEEECT
T ss_pred eEEEEEECC
Confidence 999999863
No 86
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.4e-32 Score=263.52 Aligned_cols=279 Identities=15% Similarity=0.166 Sum_probs=213.7
Q ss_pred CCCCCCCCCCCCCCCCCc-eeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCe
Q 011711 85 PVSNHKKSPPSYNCPKNN-VRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN 163 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g-~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 163 (479)
.+.+|...|.+++|+|+| .++++|+.||+++||+..+...
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------------------------------- 108 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK--------------------------------------- 108 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC---------------------------------------
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc---------------------------------------
Confidence 457899999999999999 8999999999888886432211
Q ss_pred eEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCC-CCCEEEEEeCCCcEEEEECCCCceEEEEecC----CceeE
Q 011711 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLG----AEVGS 238 (479)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~-~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~----~~~~~ 238 (479)
.....+.+|...|.+++|+| ++++|++++.|+.|++||+.+ +....+... ..+.+
T Consensus 109 -------------------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~ 168 (383)
T 3ei3_B 109 -------------------TSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCC 168 (383)
T ss_dssp -------------------EEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEE
T ss_pred -------------------ceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEE
Confidence 11222347999999999999 789999999999999999996 444444432 33444
Q ss_pred EE--eCCCEEEEE-cCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeee
Q 011711 239 LI--CEGPWVFVG-MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALL 312 (479)
Q Consensus 239 ~~--~~~~~l~~~-~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 312 (479)
+. +++++++++ .++.|++||++......+..|...|.+++|+++ ++++|+.|+.|++||+.+.... ..+...+
T Consensus 169 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~ 247 (383)
T 3ei3_B 169 VDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK-NSYIAEM 247 (383)
T ss_dssp EEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST-TCEEEEE
T ss_pred EEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc-cceEEEe
Confidence 44 477777665 789999999976667788899999999999987 7999999999999999874421 1223333
Q ss_pred cCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEeCCC-------CCc----------EEEEEc--CCEEE
Q 011711 313 KGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT-------DAP----------MSLLCW--DQYLL 370 (479)
Q Consensus 313 ~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-------~~v----------~~~~~~--~~~l~ 370 (479)
+|...|.+++|+ +.+|++++.|+.|++||+++++.+..+..|. ..+ ..+.+. +++
T Consensus 248 -~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-- 324 (383)
T 3ei3_B 248 -PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-- 324 (383)
T ss_dssp -ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--
T ss_pred -cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--
Confidence 699999999996 6899999999999999999988877776553 222 223332 333
Q ss_pred EEeCCCeEEEEEcCCCcceEEecccc--CccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC
Q 011711 371 SCSLDNTIKVWIMTEEGNLEVAYTHN--EDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (479)
Q Consensus 371 s~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 432 (479)
+++.|+.|++||+.+++.+..+..+. ..+..+.+ +|+++ +|++++ |+.|++||+++
T Consensus 325 s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~----s~~g~-~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 325 LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKF----SPTGD-VLASGM-GFNILIWNRED 382 (383)
T ss_dssp CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEE----CTTSS-EEEEEE-TTEEEEEECC-
T ss_pred ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEE----ecCcc-EEEEec-CCcEEEEecCC
Confidence 66789999999999998888777643 33333344 69998 788886 99999999874
No 87
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.3e-31 Score=252.56 Aligned_cols=249 Identities=21% Similarity=0.364 Sum_probs=211.0
Q ss_pred eeeEEEecccccEEEEEeCCC-CCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCC
Q 011711 183 TMLAKLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIES 261 (479)
Q Consensus 183 ~~~~~~~~H~~~V~~l~~s~~-~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~ 261 (479)
++..+|+||.+.|++|+|+|+ +++|+|||.|++|+|||+.+++......
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~------------------------------ 78 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIP------------------------------ 78 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEE------------------------------
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccccee------------------------------
Confidence 566789999999999999997 6899999999999999998765321111
Q ss_pred CceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCe
Q 011711 262 SAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNT 337 (479)
Q Consensus 262 ~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~ 337 (479)
...+.+|...|.+++|+++ +|++|+.|+.|++|+..... .......+...+..+.+. ++++++++.|+.
T Consensus 79 --~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~ 151 (340)
T 4aow_A 79 --QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGT-----TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 151 (340)
T ss_dssp --EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred --eEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccc-----eeeeecCCCCceeEEEEeecCccceeecCCCe
Confidence 1245679999999999987 99999999999999987754 355566777888888885 889999999999
Q ss_pred EEEEECCCCcEE-EEEeCCCCCcEEEEEc----CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCC
Q 011711 338 IRVWDLDTLEAV-MTLNGHTDAPMSLLCW----DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDG 412 (479)
Q Consensus 338 I~iwd~~~~~~~-~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (479)
+++||+...... ....+|...+..+.+. ..++++++.|+.|++||+++.+....+..|...+..+.+ +|++
T Consensus 152 ~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~----s~~~ 227 (340)
T 4aow_A 152 IKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTV----SPDG 227 (340)
T ss_dssp EEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE----CTTS
T ss_pred EEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEE----CCCC
Confidence 999999875543 4456788889888886 357899999999999999999888888888877666655 5998
Q ss_pred CcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCceEEEEcCCCcEEEEEeccC
Q 011711 413 NPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDGLFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 413 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~~ 473 (479)
+ +|++++.|+.|++||+.+.+.+..+.+...+.++.|+|++.+++++.|+.|++||+...
T Consensus 228 ~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~ 287 (340)
T 4aow_A 228 S-LCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGK 287 (340)
T ss_dssp S-EEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTT
T ss_pred C-EEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCC
Confidence 8 89999999999999999999999999999999999999997888889999999998754
No 88
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=5.3e-32 Score=258.12 Aligned_cols=302 Identities=16% Similarity=0.145 Sum_probs=211.9
Q ss_pred CCCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCe
Q 011711 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN 163 (479)
Q Consensus 84 ~~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 163 (479)
..+.||+..|++++|+|+|.+||+|+.||+++||+..+...
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--------------------------------------- 45 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS--------------------------------------- 45 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC---------------------------------------
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC---------------------------------------
Confidence 34578999999999999999999999999999996443211
Q ss_pred eEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCC--CCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEe
Q 011711 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL--RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241 (479)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~--~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 241 (479)
..+.+..+.+|...|++++|+| ++++|++++.||+|++||+.+++...... ..
T Consensus 46 -----------------~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~---~~----- 100 (351)
T 3f3f_A 46 -----------------NWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGR---RW----- 100 (351)
T ss_dssp -----------------CEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSC---SE-----
T ss_pred -----------------cceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccccc---Cc-----
Confidence 0145667889999999999999 69999999999999999998774210000 00
Q ss_pred CCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC----EEEEEeCCCcEEEEEccCCCCCcc-cc-------e
Q 011711 242 EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNTQNPF-QL-------A 309 (479)
Q Consensus 242 ~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~~~~~~~-~~-------~ 309 (479)
.....+..|...|.+++|+++ ++++++.||.|++||+.+...... .. .
T Consensus 101 --------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 160 (351)
T 3f3f_A 101 --------------------NKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS 160 (351)
T ss_dssp --------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred --------------------ceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence 001234568899999999864 899999999999999987653210 00 0
Q ss_pred eeecCCCCCeEEEEEc-----CCEEEEEeCCCeEEEEECCCCcE--EEEEeCCCCCcEEEEEc--C----CEEEEEeCCC
Q 011711 310 ALLKGHTRPVTCLAVG-----GKRLYSGSMDNTIRVWDLDTLEA--VMTLNGHTDAPMSLLCW--D----QYLLSCSLDN 376 (479)
Q Consensus 310 ~~~~~h~~~i~~l~~~-----~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~h~~~v~~~~~~--~----~~l~s~s~dg 376 (479)
.....|...+.+++|+ +.++++++.|+.+.+|+...++. +..+.+|...|.++.+. + ++|++++.||
T Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg 240 (351)
T 3f3f_A 161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG 240 (351)
T ss_dssp CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence 1123688899999995 78999999999999998888775 77888999999999998 3 5899999999
Q ss_pred eEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEE----EEeCCCeEEEeecCCCceeeeee-ccCceEEEEEC
Q 011711 377 TIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLI----CSCNDDSVHLYELPSFMERGRIF-SRREVRVIETG 451 (479)
Q Consensus 377 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s 451 (479)
.|++||++.................... .+... .+. .+.....+.+|+....+.+..+. |...|++++|+
T Consensus 241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 315 (351)
T 3f3f_A 241 RIRIFKITEKLSPLASEESLTNSNMFDN----SADVD-MDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN 315 (351)
T ss_dssp CEEEEEEEECC--------------------------------------------CCSEEEEEEEEECTTSSCEEEEEEC
T ss_pred eEEEEeCCCCcCccccCCcccceeccCC----Ccccc-cccccccccccceeeeecccccccEEEEEecccccEEEEEEc
Confidence 9999999876443332222221111111 12211 222 22334556666666666666665 47889999999
Q ss_pred CCc-eEEEEcCCCcEEEEEeccCC
Q 011711 452 PDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 452 ~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
|++ +|++|+.||.|++|++..++
T Consensus 316 ~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 316 LTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp SSSCCEEEEETTSCEEEEEECTTS
T ss_pred CCCCEEEEecCCCcEEEEecCcCc
Confidence 999 99999999999999998754
No 89
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-32 Score=270.56 Aligned_cols=284 Identities=15% Similarity=0.165 Sum_probs=213.9
Q ss_pred CCCCCCCCCCCCCC-CceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCC--eEEEeccCCe
Q 011711 87 SNHKKSPPSYNCPK-NNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK--NVCYHWLSGN 163 (479)
Q Consensus 87 ~gh~~~i~~~~~s~-~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~c~~~~~~~ 163 (479)
.+|...|++++|+| +|.+||+|+.||+|+||+..+......... ...+ .+... .+++.+....
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-------------~~~~-~h~~~v~~~~~~~~~~~ 125 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS-------------SLTY-DCSSTVTQITMIPNFDA 125 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC-------------SEEE-ECSSCEEEEEECTTSSE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce-------------eeec-cCCCCEEEEEEeCCCCE
Confidence 78999999999999 999999999999999998765211000000 0011 23333 4455556678
Q ss_pred eEeCCCCCeEEEeecC---CCceeeEEEec------------ccccEEEEE--eCCCCCEEEEEeCCCcEEEEECCCCce
Q 011711 164 CVKGDECRFWHSWFCG---EGFTMLAKLEG------------HKKAVSGIA--LPLRSDKLYSGSRDGTVQLWDCHTGQS 226 (479)
Q Consensus 164 ~~~g~~d~~i~vw~~~---~~~~~~~~~~~------------H~~~V~~l~--~s~~~~~l~s~s~Dg~v~vwd~~~~~~ 226 (479)
+++|+.|+.|++||++ ++ +.+..+.+ |...+.++. +++++.+|++++.|+.|++||+.+++.
T Consensus 126 l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 204 (437)
T 3gre_A 126 FAVSSKDGQIIVLKVNHYQQE-SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER 204 (437)
T ss_dssp EEEEETTSEEEEEEEEEEEET-TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEeCCCEEEEEEeccccCC-ceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Confidence 9999999999999995 33 34444443 344556665 457899999999999999999999887
Q ss_pred EEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCC
Q 011711 227 ASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQN 304 (479)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~ 304 (479)
+..+.. ..|...|.+++|+++ +|++|+.||.|++||++.+.
T Consensus 205 ~~~~~~-----------------------------------~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-- 247 (437)
T 3gre_A 205 LQIIEN-----------------------------------SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV-- 247 (437)
T ss_dssp EEEEEC-----------------------------------CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE--
T ss_pred eEEEcc-----------------------------------CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc--
Confidence 765531 126788999999877 89999999999999998753
Q ss_pred cccceeeec-CCCCCeEEEEEc------CCEEEEEeCCCeEEEEECCCCcEEEEEeCCC---------------------
Q 011711 305 PFQLAALLK-GHTRPVTCLAVG------GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT--------------------- 356 (479)
Q Consensus 305 ~~~~~~~~~-~h~~~i~~l~~~------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~--------------------- 356 (479)
....+. .|..+|.+++++ +.+|++|+.||.|++||+++++++..+.+|.
T Consensus 248 ---~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (437)
T 3gre_A 248 ---LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFC 324 (437)
T ss_dssp ---EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCC
T ss_pred ---EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceec
Confidence 355554 788899999764 4589999999999999999999998887653
Q ss_pred -----CCcEEEEEc-CCEEEEEeCCCeEEEEEcCCCcceEEecc------------------------------------
Q 011711 357 -----DAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYT------------------------------------ 394 (479)
Q Consensus 357 -----~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------------------------------------ 394 (479)
..|.++.+. +++|++++.|+.|++||+.+++....+..
T Consensus 325 ~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (437)
T 3gre_A 325 GIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSL 404 (437)
T ss_dssp CCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-----------
T ss_pred ccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccc
Confidence 346666776 56899999999999999999887776665
Q ss_pred -ccCccceEEEeeeeCCC-CCcEEEEEeCCCeEEEee
Q 011711 395 -HNEDHGVLALGGLNDPD-GNPVLICSCNDDSVHLYE 429 (479)
Q Consensus 395 -~~~~~~~~~~~~~~~~~-~~~~l~s~~~dg~v~iwd 429 (479)
|...+..+.+. ++ +..+|++|+.||.|+||+
T Consensus 405 ~h~~~I~~i~~~----~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 405 YHHDIINSISTC----EVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --CCCEEEEEEE----ESSSSEEEEEEETTSCEEEEC
T ss_pred ccccceeeEeee----ccCCceEEEEEcCCceEEEeC
Confidence 33334433332 43 334999999999999995
No 90
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=270.71 Aligned_cols=310 Identities=11% Similarity=0.044 Sum_probs=231.8
Q ss_pred CCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEeCC
Q 011711 89 HKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGD 168 (479)
Q Consensus 89 h~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~ 168 (479)
....|.+++|||||+++||+|.|++|+ +...+.. ... +......+++.|.+
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~-------l~g-------------h~~~v~~V~FsPdg------- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD-------INC-------------NSKNLFHVKEFPLE------- 64 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC-------CSS-------------BGGGTEEEEEECCC-------
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccce-------ecC-------------CCccEEEEEECCCC-------
Confidence 557889999999999999999999999 4222211 100 11122355565544
Q ss_pred CCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC-----ceeEEE--e
Q 011711 169 ECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA-----EVGSLI--C 241 (479)
Q Consensus 169 ~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~-----~~~~~~--~ 241 (479)
.++.+.+|+.+.. .+..+ +|...|.+++|+|+|++||+++.||+|++||.+. ++..+.+.. .+.++. +
T Consensus 65 ~~~~~~~~~~~~~--~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSP 139 (588)
T 2j04_A 65 FENKLDFELAQQN--GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNP 139 (588)
T ss_dssp CCCTTTTSCCCSS--CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECS
T ss_pred CcceEEEEeCCCc--eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcC
Confidence 4555555554322 12222 5688999999999999999999999999999654 555555222 255555 5
Q ss_pred CCCEEEEE-cCCeEEEEEcCCCce--------EEe----cCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccc
Q 011711 242 EGPWVFVG-MPNVVKAWHIESSAE--------FSL----DGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQL 308 (479)
Q Consensus 242 ~~~~l~~~-~~~~i~v~~~~~~~~--------~~~----~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 308 (479)
+|++|+++ .|++|++||+.++.. ..+ .+|...|.+++|+|+-+++++.|+.|++||+..+.. .+.
T Consensus 140 DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~--~~~ 217 (588)
T 2j04_A 140 IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSH--QPV 217 (588)
T ss_dssp SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSS--CCC
T ss_pred CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCcc--ccc
Confidence 88888876 689999999998853 333 677889999999999889999999999999987652 112
Q ss_pred eeee-cCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEE--c--CCEEEEEeCCCeEEEEEc
Q 011711 309 AALL-KGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLC--W--DQYLLSCSLDNTIKVWIM 383 (479)
Q Consensus 309 ~~~~-~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~--~--~~~l~s~s~dg~i~iwd~ 383 (479)
...+ .+|...|.+++|+++.+++++ +++|++||+.+++......+|...+..+.+ + +..+++++.||+ ++|..
T Consensus 218 ~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 218 SRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp EEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred eeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 3445 478899999999988999987 699999999988875444489999999999 6 458999999999 99988
Q ss_pred CCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEc
Q 011711 384 TEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGD 460 (479)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~ 460 (479)
+. +.+ +|++. ++++ .|+++++|+..... ...+.+...|.+++++||| .+|+++
T Consensus 296 d~----------------~~~----spd~~-l~a~--~d~~v~lW~~~g~~-l~~~~~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 296 DE----------------LHV----TADNI-IAPY--LEKKFKKWSTIWNE-FNNYETTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp SS----------------EEE----ECCCS-SHHH--HHHHHHHTTTTTTS-SSSSCCEEEEEEEEECTTSSEEEEEE
T ss_pred cc----------------EEE----CCCce-EEEE--cCCEEEEEECCCCc-eeeeccceEEEEEEECCCCCEEEEEE
Confidence 61 233 58887 4444 39999999985544 4455566679999999999 777765
No 91
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.8e-31 Score=261.13 Aligned_cols=271 Identities=18% Similarity=0.213 Sum_probs=213.8
Q ss_pred eeEeCCCCCeEEEeecCCCce---eeEEEecccccEEEEEeCC-CCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeE
Q 011711 163 NCVKGDECRFWHSWFCGEGFT---MLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS 238 (479)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~---~~~~~~~H~~~V~~l~~s~-~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~ 238 (479)
.+++++.||.|+||++....+ .+..+.+|.+.|++++|+| ++++|++|+.||+|++||+.++......
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~-------- 120 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL-------- 120 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCB--------
T ss_pred EEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcccc--------
Confidence 334688999999999965422 4556889999999999999 9999999999999999999887432110
Q ss_pred EEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeee--c
Q 011711 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALL--K 313 (479)
Q Consensus 239 ~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~--~ 313 (479)
......+.+|...|.+++|+++ +|++++.||.|++||+.++. ....+ .
T Consensus 121 ----------------------~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~ 173 (402)
T 2aq5_A 121 ----------------------REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-----AVLTLGPD 173 (402)
T ss_dssp ----------------------CSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-----EEEEECTT
T ss_pred ----------------------CCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-----ccEEEecC
Confidence 0112345578999999999976 79999999999999998764 35666 7
Q ss_pred CCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEE-eCCCCC-cEEEEEc--CCEEEEE---eCCCeEEEEEcC
Q 011711 314 GHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTL-NGHTDA-PMSLLCW--DQYLLSC---SLDNTIKVWIMT 384 (479)
Q Consensus 314 ~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~h~~~-v~~~~~~--~~~l~s~---s~dg~i~iwd~~ 384 (479)
.|...|.+++|+ +++|++++.||.|++||+++++.+..+ ..|... +.++.+. +.+|+++ +.|+.|++||++
T Consensus 174 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~ 253 (402)
T 2aq5_A 174 VHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTK 253 (402)
T ss_dssp TCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETT
T ss_pred CCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCc
Confidence 899999999996 889999999999999999999999999 788776 7888887 6678888 689999999998
Q ss_pred CCcceEEec--cccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCce-eee---eeccCceEEEEECCCc-eEE
Q 011711 385 EEGNLEVAY--THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFME-RGR---IFSRREVRVIETGPDG-LFF 457 (479)
Q Consensus 385 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~---~~~~~~v~~l~~s~~g-~l~ 457 (479)
+........ .+...+..+ .++|+++.++++++.|+.|++||+.+++. +.. ..+...|.+++|+|++ +++
T Consensus 254 ~~~~~~~~~~~~~~~~v~~~----~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 254 HLEEPLSLQELDTSSGVLLP----FFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV 329 (402)
T ss_dssp BCSSCSEEEECCCCSSCEEE----EEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCG
T ss_pred cccCCceEEeccCCCceeEE----EEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccce
Confidence 866522222 233333333 34699995556777899999999998873 222 3346899999999999 655
Q ss_pred EEcCCCcEEEEEeccCC
Q 011711 458 TGDGTGMLSVWKILAKP 474 (479)
Q Consensus 458 sg~~dg~v~vw~~~~~~ 474 (479)
+ .++.+++|++.++.
T Consensus 330 s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 330 N--KCEIARFYKLHERK 344 (402)
T ss_dssp G--GTEEEEEEEEETTE
T ss_pred e--cceeEEEEEcCCCc
Confidence 4 46699999998754
No 92
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.6e-31 Score=263.27 Aligned_cols=273 Identities=11% Similarity=0.175 Sum_probs=211.5
Q ss_pred cccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCc-----------eEEEEecC-------------CceeEEEe--CC
Q 011711 190 GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ-----------SASVINLG-------------AEVGSLIC--EG 243 (479)
Q Consensus 190 ~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~-----------~~~~~~~~-------------~~~~~~~~--~~ 243 (479)
.|.+.|++++|+|++++||+|+.||.|+|||+.+++ ....+..+ ..+.++.+ ++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 478999999999999999999999999999999877 35556544 44666654 43
Q ss_pred ---CEEEEEcCCeEEEEEcCCCceE----------------------------------------E-ecCCCccEEEEEE
Q 011711 244 ---PWVFVGMPNVVKAWHIESSAEF----------------------------------------S-LDGPVGEVYSMVV 279 (479)
Q Consensus 244 ---~~l~~~~~~~i~v~~~~~~~~~----------------------------------------~-~~~~~~~v~~~~~ 279 (479)
.+++++.|+.|++|++.++... . ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 3555679999999999764431 1 3579999999999
Q ss_pred cCC--EEEEEeCCCcEEEEEccCCCCCccccee-------eecCCCCCeEEEEEc--C-CEEEEEeCCCeEEEEECCCCc
Q 011711 280 ANE--MLFAGAQDGNILVWKGIPNTQNPFQLAA-------LLKGHTRPVTCLAVG--G-KRLYSGSMDNTIRVWDLDTLE 347 (479)
Q Consensus 280 ~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~-------~~~~h~~~i~~l~~~--~-~~l~sgs~dg~I~iwd~~~~~ 347 (479)
+++ .|++| .||.|++||+..... ... .+.+|...|.+++|+ + ++|++|+.||.|++||+++++
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 260 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDR----SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA 260 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEE----EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCc----eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence 987 88888 899999999984321 122 367899999999997 5 899999999999999999988
Q ss_pred E----EEEEeCCCC------------CcEEEEEc--CCEEEEEeCCCeEEEEEcCC-CcceEEeccccCccceE------
Q 011711 348 A----VMTLNGHTD------------APMSLLCW--DQYLLSCSLDNTIKVWIMTE-EGNLEVAYTHNEDHGVL------ 402 (479)
Q Consensus 348 ~----~~~~~~h~~------------~v~~~~~~--~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~------ 402 (479)
. +..+..|.. .|.++.++ +++|++++. +.|++||+++ ...+..+..|......+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN 339 (447)
T ss_dssp SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHT
T ss_pred cccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccc
Confidence 7 788988886 89999998 789999998 9999999987 66666666554322110
Q ss_pred -----EEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeee---------------------------------eccCc
Q 011711 403 -----ALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRI---------------------------------FSRRE 444 (479)
Q Consensus 403 -----~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---------------------------------~~~~~ 444 (479)
.+.+.++|+++ +|++++.|+.|++||+.+++.+... .....
T Consensus 340 ~~i~~~~~~~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (447)
T 3dw8_B 340 DCIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKK 418 (447)
T ss_dssp SGGGCCCCEEECTTSS-EEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSC
T ss_pred cccccceEEEECCCCC-EEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCc
Confidence 11234469998 7899999999999999988765311 12456
Q ss_pred eEEEEECCCc-eEEEEcCCCcEEEEEe
Q 011711 445 VRVIETGPDG-LFFTGDGTGMLSVWKI 470 (479)
Q Consensus 445 v~~l~~s~~g-~l~sg~~dg~v~vw~~ 470 (479)
|..++|+|++ .|++++.++ +++|.-
T Consensus 419 i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 419 ILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred eeEEEECCCCCEEEEEecce-eeeecc
Confidence 8899999999 888888776 778864
No 93
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-30 Score=252.78 Aligned_cols=248 Identities=17% Similarity=0.232 Sum_probs=200.5
Q ss_pred eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCC
Q 011711 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESS 262 (479)
Q Consensus 183 ~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~ 262 (479)
+++..+.+|.+.|++++|+|++++|++++.||.|++||+..+.....
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~--------------------------------- 48 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI--------------------------------- 48 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE---------------------------------
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceee---------------------------------
Confidence 45678899999999999999999999999999999999874322111
Q ss_pred ceEEecCCCccEEEEEEc----CCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc----CCEEEEEeC
Q 011711 263 AEFSLDGPVGEVYSMVVA----NEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG----GKRLYSGSM 334 (479)
Q Consensus 263 ~~~~~~~~~~~v~~~~~~----~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~----~~~l~sgs~ 334 (479)
..+.+|...|.+++|+ .++|++|+.||.|++||+.++. ......+..|...|.+++|+ +.++++++.
T Consensus 49 --~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 123 (379)
T 3jrp_A 49 --DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR---WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 123 (379)
T ss_dssp --EEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE---EEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred --eEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc---eeEeeeecCCCcceEEEEeCCCCCCCEEEEecC
Confidence 2345688999999997 3499999999999999998864 23467778899999999996 679999999
Q ss_pred CCeEEEEECCCC--cEEEEEeCCCCCcEEEEEc---------------CCEEEEEeCCCeEEEEEcCCCcce----EEec
Q 011711 335 DNTIRVWDLDTL--EAVMTLNGHTDAPMSLLCW---------------DQYLLSCSLDNTIKVWIMTEEGNL----EVAY 393 (479)
Q Consensus 335 dg~I~iwd~~~~--~~~~~~~~h~~~v~~~~~~---------------~~~l~s~s~dg~i~iwd~~~~~~~----~~~~ 393 (479)
|+.|++||+++. .....+..|...|.++.+. +.++++++.||.|++||+++.... ..+.
T Consensus 124 d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 203 (379)
T 3jrp_A 124 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 203 (379)
T ss_dssp TSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC
T ss_pred CCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe
Confidence 999999999987 3456778899999999986 478999999999999999876543 3344
Q ss_pred cccCccceEEEeeeeCCCC--CcEEEEEeCCCeEEEeecCCCceee---e---eeccCceEEEEECCCc-eEEEEcCCCc
Q 011711 394 THNEDHGVLALGGLNDPDG--NPVLICSCNDDSVHLYELPSFMERG---R---IFSRREVRVIETGPDG-LFFTGDGTGM 464 (479)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~---~---~~~~~~v~~l~~s~~g-~l~sg~~dg~ 464 (479)
.|...+..+.+ +|++ ..+|++++.|+.|++||+.++.... . ..+...|.+++|+|++ +|++++.||.
T Consensus 204 ~h~~~v~~~~~----sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 279 (379)
T 3jrp_A 204 GHSDWVRDVAW----SPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 279 (379)
T ss_dssp CCSSCEEEEEE----CCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSS
T ss_pred cccCcEeEEEE----CCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCc
Confidence 45555544444 6883 3489999999999999999864211 1 1257789999999999 9999999999
Q ss_pred EEEEEecc
Q 011711 465 LSVWKILA 472 (479)
Q Consensus 465 v~vw~~~~ 472 (479)
|++|++..
T Consensus 280 i~iw~~~~ 287 (379)
T 3jrp_A 280 VTLWKENL 287 (379)
T ss_dssp EEEEEEEE
T ss_pred EEEEeCCC
Confidence 99999984
No 94
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.2e-30 Score=245.17 Aligned_cols=272 Identities=12% Similarity=0.081 Sum_probs=222.4
Q ss_pred eEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCc----eEEEEecCCceeEEE--eCCC-EEEE-EcCCeEEE
Q 011711 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ----SASVINLGAEVGSLI--CEGP-WVFV-GMPNVVKA 256 (479)
Q Consensus 185 ~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~----~~~~~~~~~~~~~~~--~~~~-~l~~-~~~~~i~v 256 (479)
+....+|.+.|++++|+|++++|++++.|+.|++||+.+++ ......+...+.++. +++. ++++ +.++.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 34456899999999999999999999999999999999888 555556666666655 4777 5655 57999999
Q ss_pred EEc-CCCceEEecC--CCccEEEEEEcC-CEEEEEeCCCcEEEEEccCCCCCc----ccceeeecCCCCCeEEEEEcCCE
Q 011711 257 WHI-ESSAEFSLDG--PVGEVYSMVVAN-EMLFAGAQDGNILVWKGIPNTQNP----FQLAALLKGHTRPVTCLAVGGKR 328 (479)
Q Consensus 257 ~~~-~~~~~~~~~~--~~~~v~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~----~~~~~~~~~h~~~i~~l~~~~~~ 328 (479)
|++ .++....+.. |...|.+++|++ +.+++++.||.|++||+.+..... .++...+. |...|.+++++++.
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 84 VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR 162 (342)
T ss_dssp ECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE
T ss_pred EEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc
Confidence 999 9998888888 999999999995 599999999999999988610000 11233344 88999999999777
Q ss_pred EEEEeCCCeEEEEECCC-Cc--EEEEEeCCCCCcEEEEEc---CCEEEEEeCCCeEEEEEcCCC------cceEEecccc
Q 011711 329 LYSGSMDNTIRVWDLDT-LE--AVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEE------GNLEVAYTHN 396 (479)
Q Consensus 329 l~sgs~dg~I~iwd~~~-~~--~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~------~~~~~~~~~~ 396 (479)
+++++.|+.|++||+++ ++ .......|...+.++.+. ++++++++.||.|++|+++.. .....+..+.
T Consensus 163 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 242 (342)
T 1yfq_A 163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR 242 (342)
T ss_dssp EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccc
Confidence 99999999999999998 54 344556788889998886 589999999999999999887 6666666664
Q ss_pred C---------ccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec--cCceEEEEECCCc-eEEEEcCCCc
Q 011711 397 E---------DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS--RREVRVIETGPDG-LFFTGDGTGM 464 (479)
Q Consensus 397 ~---------~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~v~~l~~s~~g-~l~sg~~dg~ 464 (479)
. .+..+ .++|+++ +|++++.||.|++||+.+++.+..+.. ...|.+++ |++ +|++++.||.
T Consensus 243 ~~~~~~~~~~~i~~~----~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 243 LNLKDTNLAYPVNSI----EFSPRHK-FLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp CCTTCCSSCCCEEEE----EECTTTC-CEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred ccccccccceeEEEE----EEcCCCC-EEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 4 33333 4469888 788999999999999999998888763 68899999 888 9999999998
No 95
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-30 Score=255.62 Aligned_cols=284 Identities=20% Similarity=0.245 Sum_probs=219.8
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeee-cCC--CeEEEeccCCe
Q 011711 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLER-TTP--KNVCYHWLSGN 163 (479)
Q Consensus 87 ~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~c~~~~~~~ 163 (479)
.+|...+....+++++..+++++.||++++|+..+.... ..... +.. ..+++.+.+..
T Consensus 88 ~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~-------------------~~~~~~~~~~v~~v~~s~~~~~ 148 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVS-------------------ALAETDESTYVASVKWSHDGSF 148 (401)
T ss_dssp TTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEE-------------------EEEECCTTCCEEEEEECTTSSE
T ss_pred CCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEe-------------------EeeecCCCCCEEEEEECCCCCE
Confidence 467776666555555567888888999999987654320 01111 222 34556666779
Q ss_pred eEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCc-eEEEEecCCceeEEEeC
Q 011711 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ-SASVINLGAEVGSLICE 242 (479)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~-~~~~~~~~~~~~~~~~~ 242 (479)
+++|+.|+.|++||+.++ +.+..+.+|...|.+++| ++++|++++.||.|++||+.... ...
T Consensus 149 l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~-------------- 211 (401)
T 4aez_A 149 LSVGLGNGLVDIYDVESQ-TKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIG-------------- 211 (401)
T ss_dssp EEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE--------------
T ss_pred EEEECCCCeEEEEECcCC-eEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceee--------------
Confidence 999999999999999988 788999999999999999 56899999999999999998433 322
Q ss_pred CCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeE
Q 011711 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT 320 (479)
Q Consensus 243 ~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~ 320 (479)
.+..|...|.+++|+++ .|++|+.||.|++||+.+.. ....+..|...|.
T Consensus 212 -----------------------~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-----~~~~~~~~~~~v~ 263 (401)
T 4aez_A 212 -----------------------TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI-----PKFTKTNHNAAVK 263 (401)
T ss_dssp -----------------------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS-----EEEEECCCSSCCC
T ss_pred -----------------------EEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC-----ccEEecCCcceEE
Confidence 23468889999999987 99999999999999998753 4667788999999
Q ss_pred EEEEc---CCEEEEEe--CCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEE--eCCCeEEEEEcCCCcceEE
Q 011711 321 CLAVG---GKRLYSGS--MDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSC--SLDNTIKVWIMTEEGNLEV 391 (479)
Q Consensus 321 ~l~~~---~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~--s~dg~i~iwd~~~~~~~~~ 391 (479)
+++|+ ..++++++ .|+.|++||+++++++..+. +...+.++.++ +++++++ +.||.|++||+.+......
T Consensus 264 ~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~ 342 (401)
T 4aez_A 264 AVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQ 342 (401)
T ss_dssp EEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEE
T ss_pred EEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeE
Confidence 99997 46777765 79999999999999999887 56779999987 6788884 4899999999988654443
Q ss_pred --eccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee
Q 011711 392 --AYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF 440 (479)
Q Consensus 392 --~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 440 (479)
+..|...+..+.+ +|+++ +|++++.||.|++||+.+++.+....
T Consensus 343 ~~~~~h~~~v~~~~~----s~dg~-~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 343 VDIPAHDTRVLYSAL----SPDGR-ILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EEEECCSSCCCEEEE----CTTSS-EEEEECTTSEEEEEECCC--------
T ss_pred EEecCCCCCEEEEEE----CCCCC-EEEEEeCCCcEEEEECCCCccccccc
Confidence 4456666666555 59988 89999999999999999988776554
No 96
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-31 Score=255.99 Aligned_cols=254 Identities=20% Similarity=0.187 Sum_probs=204.4
Q ss_pred CCCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEecc---
Q 011711 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWL--- 160 (479)
Q Consensus 84 ~~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~--- 160 (479)
..+.+|...|.+++|+|+|.+||+|+.||+++||+...... .....+..|.....|..|.
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-----------------~~~~~~~~h~~~v~~~~~~~~~ 67 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-----------------KLIDTLTGHEGPVWRVDWAHPK 67 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-----------------EEEEEECCCSSCEEEEEECCGG
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-----------------eeeeEecCCCCcEEEEEeCCCC
Confidence 45688999999999999999999999999999998753211 1122333455556565553
Q ss_pred -CCeeEeCCCCCeEEEeecCCCc-eeeEEEecccccEEEEEeCCC--CCEEEEEeCCCcEEEEECCCCceEEEEecCCce
Q 011711 161 -SGNCVKGDECRFWHSWFCGEGF-TMLAKLEGHKKAVSGIALPLR--SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV 236 (479)
Q Consensus 161 -~~~~~~g~~d~~i~vw~~~~~~-~~~~~~~~H~~~V~~l~~s~~--~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~ 236 (479)
...+++|+.|+.|++||+.++. ..+..+.+|...|.+++|+|+ +++|++++.|+.|++||+.++.....
T Consensus 68 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~------- 140 (379)
T 3jrp_A 68 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP------- 140 (379)
T ss_dssp GCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE-------
T ss_pred CCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee-------
Confidence 6789999999999999998872 377888899999999999999 99999999999999999987643221
Q ss_pred eEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcC-------------C--EEEEEeCCCcEEEEEccCC
Q 011711 237 GSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN-------------E--MLFAGAQDGNILVWKGIPN 301 (479)
Q Consensus 237 ~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~-------------~--~l~~g~~dg~i~iwd~~~~ 301 (479)
.....|...|.+++|++ + .+++|+.||.|++||+...
T Consensus 141 ----------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 192 (379)
T 3jrp_A 141 ----------------------------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD 192 (379)
T ss_dssp ----------------------------EEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETT
T ss_pred ----------------------------EEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCC
Confidence 22346788899999987 3 8999999999999999876
Q ss_pred CCCcccceeeecCCCCCeEEEEEc-----CCEEEEEeCCCeEEEEECCCCc---EEEEE--eCCCCCcEEEEEc--CCEE
Q 011711 302 TQNPFQLAALLKGHTRPVTCLAVG-----GKRLYSGSMDNTIRVWDLDTLE---AVMTL--NGHTDAPMSLLCW--DQYL 369 (479)
Q Consensus 302 ~~~~~~~~~~~~~h~~~i~~l~~~-----~~~l~sgs~dg~I~iwd~~~~~---~~~~~--~~h~~~v~~~~~~--~~~l 369 (479)
... ..+...+.+|...|.+++|+ +++|++++.||.|++||+++++ ....+ ..|...+.++.++ +++|
T Consensus 193 ~~~-~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 271 (379)
T 3jrp_A 193 AQT-YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL 271 (379)
T ss_dssp TTE-EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCE
T ss_pred Ccc-eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEE
Confidence 432 34556788999999999996 5789999999999999999864 22222 3478889999987 7899
Q ss_pred EEEeCCCeEEEEEcCCCcceE
Q 011711 370 LSCSLDNTIKVWIMTEEGNLE 390 (479)
Q Consensus 370 ~s~s~dg~i~iwd~~~~~~~~ 390 (479)
++++.||.|++|++.......
T Consensus 272 ~~~~~dg~i~iw~~~~~~~~~ 292 (379)
T 3jrp_A 272 ALSGGDNKVTLWKENLEGKWE 292 (379)
T ss_dssp EEEESSSSEEEEEEEETTEEE
T ss_pred EEecCCCcEEEEeCCCCCccc
Confidence 999999999999998654433
No 97
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=5.6e-30 Score=246.10 Aligned_cols=286 Identities=13% Similarity=0.074 Sum_probs=207.2
Q ss_pred EeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-CceeEEEeCCCEEE-E-EcC
Q 011711 175 SWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG-AEVGSLICEGPWVF-V-GMP 251 (479)
Q Consensus 175 vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~-~~~ 251 (479)
+|++.+. +++..+++|.+.|++++|+||+++|++|+.|+ +++||+.+++........ .....+.+.++.++ + +.+
T Consensus 3 i~s~~~~-~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (355)
T 3vu4_A 3 LGSMITR-NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVK 80 (355)
T ss_dssp -----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSST
T ss_pred ccccccc-CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCc
Confidence 4555555 56777899999999999999999999998775 789999988777665543 22334445666664 3 466
Q ss_pred CeEEEEEcCCCceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEE
Q 011711 252 NVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYS 331 (479)
Q Consensus 252 ~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~s 331 (479)
+.|++||..+++......+...|.++.++++.++++. |+.|++||+.+... .+..+.. +...++++..++++
T Consensus 81 ~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~----~~~~~~~---~~~~~~~s~~~la~ 152 (355)
T 3vu4_A 81 EVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWK----RITDDIR---FGGVCEFSNGLLVY 152 (355)
T ss_dssp TEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCC----BSSCCEE---EEEEEEEETTEEEE
T ss_pred cEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEE-cCEEEEEECCCCce----eeEEecc---CCceEEEEccEEEE
Confidence 8999999999988765567789999999999777664 78999999987621 1222222 23334444466666
Q ss_pred --EeCCCeEEEEECCCCc----------------EEEEEeCCCCCcEEEEEc--CCEEEEEeCCCe-EEEEEcCCCcceE
Q 011711 332 --GSMDNTIRVWDLDTLE----------------AVMTLNGHTDAPMSLLCW--DQYLLSCSLDNT-IKVWIMTEEGNLE 390 (479)
Q Consensus 332 --gs~dg~I~iwd~~~~~----------------~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-i~iwd~~~~~~~~ 390 (479)
|+.||.|++||+++++ .+..+.+|...|.++.++ +++|++++.|++ |++||+++++.+.
T Consensus 153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~ 232 (355)
T 3vu4_A 153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR 232 (355)
T ss_dssp EESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE
T ss_pred eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 5899999999999865 278899999999999998 789999999998 9999999998887
Q ss_pred Eec-c-ccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeee----------------------e--ccCc
Q 011711 391 VAY-T-HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRI----------------------F--SRRE 444 (479)
Q Consensus 391 ~~~-~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~----------------------~--~~~~ 444 (479)
.+. . |...+..+.+ +|+++ +|++++.|++|++||++........ . ....
T Consensus 233 ~~~~g~h~~~v~~~~~----s~~~~-~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKW----STDGS-KLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVR 307 (355)
T ss_dssp EEECTTCCSCEEEEEE----CTTSC-EEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCC
T ss_pred EEEcCCCCCcEEEEEE----CCCCC-EEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCC
Confidence 776 3 6666555555 69998 8999999999999999765321110 0 0122
Q ss_pred eEEEEECCCc-eEEEEcCCCcEEEEEeccCCC
Q 011711 445 VRVIETGPDG-LFFTGDGTGMLSVWKILAKPN 475 (479)
Q Consensus 445 v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~~ 475 (479)
...++|++++ .|++++.||.+++|++..++.
T Consensus 308 ~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 308 GCKIAWISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp CCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred ceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 4779999999 999999999999999987654
No 98
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.4e-30 Score=249.48 Aligned_cols=270 Identities=10% Similarity=0.069 Sum_probs=205.3
Q ss_pred cccEEEEEeCCCCCEEEEEeCCC-------cEEEEECCCCce--------EEEEe---cCCceeEEEeCCCEEEEE----
Q 011711 192 KKAVSGIALPLRSDKLYSGSRDG-------TVQLWDCHTGQS--------ASVIN---LGAEVGSLICEGPWVFVG---- 249 (479)
Q Consensus 192 ~~~V~~l~~s~~~~~l~s~s~Dg-------~v~vwd~~~~~~--------~~~~~---~~~~~~~~~~~~~~l~~~---- 249 (479)
.-+|++++|+||+++|++|+.|. .|++|++..+.. ...+. ....+.++.+++..++++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 35899999999999999998654 599999876542 12222 234567888888888775
Q ss_pred --------cCCeEEEEEcCCCceE----------EecCCCccEEEEEEcCC--EEE--EEeCCCcEEEEEccCCCCCccc
Q 011711 250 --------MPNVVKAWHIESSAEF----------SLDGPVGEVYSMVVANE--MLF--AGAQDGNILVWKGIPNTQNPFQ 307 (479)
Q Consensus 250 --------~~~~i~v~~~~~~~~~----------~~~~~~~~v~~~~~~~~--~l~--~g~~dg~i~iwd~~~~~~~~~~ 307 (479)
.++.+++|++...... ....+...+.+++|+|+ +++ +++.|+.|++||+.+..
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~----- 168 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT----- 168 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE-----
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc-----
Confidence 2568999998765421 12234556889999998 554 44578999999998764
Q ss_pred ceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEE--EeCCCCCcEEEEEc--CCEEEEEeCCC----e
Q 011711 308 LAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMT--LNGHTDAPMSLLCW--DQYLLSCSLDN----T 377 (479)
Q Consensus 308 ~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~--~~~h~~~v~~~~~~--~~~l~s~s~dg----~ 377 (479)
....+ .|...|.+++|+ ++++++++. +.+.+|+..+++.+.. ...|...+.++.+. ++++++++.|+ .
T Consensus 169 ~~~~~-~~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~ 246 (365)
T 4h5i_A 169 EKFEI-ETRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIV 246 (365)
T ss_dssp EEEEE-ECSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEE
T ss_pred EEEEe-CCCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeE
Confidence 24444 377889999997 888888875 5577777777776544 35677788888877 78999999887 6
Q ss_pred EEEEEcCCCcce----EEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee--ccCceEEEEEC
Q 011711 378 IKVWIMTEEGNL----EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF--SRREVRVIETG 451 (479)
Q Consensus 378 i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~l~~s 451 (479)
+++|++...... ..+..+...+..+++ +|+|+ +|++|+.|++|+|||+.+++.+..+. |...|++++|+
T Consensus 247 i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~----Spdg~-~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fS 321 (365)
T 4h5i_A 247 LTKISIKSGNTSVLRSKQVTNRFKGITSMDV----DMKGE-LAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTIS 321 (365)
T ss_dssp EEEEEEETTEEEEEEEEEEESSCSCEEEEEE----CTTSC-EEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEEC
T ss_pred EeecccccceecceeeeeecCCCCCeEeEEE----CCCCC-ceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEEC
Confidence 888998765432 233445555544444 69998 99999999999999999999988763 68899999999
Q ss_pred CCc-eEEEEcCCCcEEEEEeccC
Q 011711 452 PDG-LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 452 ~~g-~l~sg~~dg~v~vw~~~~~ 473 (479)
||| +|++|+.|++|+||++...
T Consensus 322 pdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 322 PDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TTSCEEEEEETTSEEEEEECCTT
T ss_pred CCCCEEEEEeCCCeEEEEEcCCC
Confidence 999 9999999999999999654
No 99
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=2.1e-29 Score=247.97 Aligned_cols=282 Identities=19% Similarity=0.275 Sum_probs=221.4
Q ss_pred CCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCC--CeEEEeccCCeeEeCCCC
Q 011711 93 PPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP--KNVCYHWLSGNCVKGDEC 170 (479)
Q Consensus 93 i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~~~~~~~g~~d 170 (479)
.+.++||+++ .||.|. |++|+|||..+.... ..+ .++.+.. ..+++.+.+..+++|+.|
T Consensus 108 ~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~----~~~-------------~~~~~~~~V~sv~fspdg~~lasgs~D 168 (420)
T 4gga_A 108 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDIL----QLL-------------QMEQPGEYISSVAWIKEGNYLAVGTSS 168 (420)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEE----EEE-------------ECCSTTCCEEEEEECTTSSEEEEEETT
T ss_pred ceeEEECCCC-EEEEEe-CCEEEEEECCCCCEE----EEE-------------EecCCCCcEEEEEECCCCCEEEEEECC
Confidence 4568888765 788876 999999986654320 000 0112222 355666677799999999
Q ss_pred CeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEc
Q 011711 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGM 250 (479)
Q Consensus 171 ~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (479)
+.|++||+.++ +.+..+.+|...|.+++++ +.+|++|+.|+.+++||........
T Consensus 169 g~v~iWd~~~~-~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~---------------------- 223 (420)
T 4gga_A 169 AEVQLWDVQQQ-KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHV---------------------- 223 (420)
T ss_dssp SCEEEEETTTT-EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEE----------------------
T ss_pred CeEEEEEcCCC-cEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceee----------------------
Confidence 99999999998 8899999999999998874 7899999999999999987654321
Q ss_pred CCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---
Q 011711 251 PNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--- 325 (479)
Q Consensus 251 ~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--- 325 (479)
..+.+|...+..+.+.++ .+++++.||.|++|+...+... .........|...|.+++|+
T Consensus 224 --------------~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~-~~~~~~~~~~~~~V~~~~~~p~~ 288 (420)
T 4gga_A 224 --------------ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG-WVPLQTFTQHQGAVKAVAWCPWQ 288 (420)
T ss_dssp --------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC-SCCSEEECCCSSCEEEEEECTTC
T ss_pred --------------EEecccccceeeeeecCCCCeeeeeeccccceEEeecccccc-ceeeeeecccCCceeeeeeCCCc
Confidence 234568888999999877 9999999999999999876542 23456678899999999996
Q ss_pred CCEEEEE--eCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEe--CCCeEEEEEcCCCcceEEeccccCcc
Q 011711 326 GKRLYSG--SMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCS--LDNTIKVWIMTEEGNLEVAYTHNEDH 399 (479)
Q Consensus 326 ~~~l~sg--s~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~ 399 (479)
...++++ +.|++|++||+.+++++..+..|. .+.++.+. ++.+++++ .|+.|++||+.+.+.+..+..|...+
T Consensus 289 ~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~-~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V 367 (420)
T 4gga_A 289 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRV 367 (420)
T ss_dssp TTEEEEEECTTTCEEEEEETTTTEEEEEEECSS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCE
T ss_pred ccEEEEEeecCCCEEEEEeCCccccceeecccc-ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCE
Confidence 5666654 589999999999999999988664 56676666 66777655 79999999999999999998888877
Q ss_pred ceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeee
Q 011711 400 GVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRI 439 (479)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 439 (479)
..+++ +|+|+ +|++|+.|++|++||+....+....
T Consensus 368 ~~l~~----spdg~-~l~S~s~D~tvriWdv~~~~~~~~~ 402 (420)
T 4gga_A 368 LSLTM----SPDGA-TVASAAADETLRLWRCFELDPARRR 402 (420)
T ss_dssp EEEEE----CTTSS-CEEEEETTTEEEEECCSCSSCC---
T ss_pred EEEEE----cCCCC-EEEEEecCCeEEEEECCCCCccchh
Confidence 66665 59998 8899999999999999876554443
No 100
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.2e-30 Score=248.96 Aligned_cols=277 Identities=14% Similarity=0.104 Sum_probs=223.0
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCC--eEEEeccCC-e
Q 011711 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK--NVCYHWLSG-N 163 (479)
Q Consensus 87 ~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~c~~~~~~-~ 163 (479)
.+|...|.+++|+|+|.+|++++.||+++||+........ .......+... .+++.+... .
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV----------------DLLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE----------------EEEEEEECSSCEEEEEEEESSSEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc----------------cceeeeecCCceEEEEECCCCCcE
Confidence 4799999999999999999999999999999876543100 01122233333 445555667 7
Q ss_pred eEeCCCCCeEEEeec-CCCceeeEEEec--ccccEEEEEeCCCCCEEEEEeCCCcEEEEECCC---------CceEEEEe
Q 011711 164 CVKGDECRFWHSWFC-GEGFTMLAKLEG--HKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHT---------GQSASVIN 231 (479)
Q Consensus 164 ~~~g~~d~~i~vw~~-~~~~~~~~~~~~--H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~---------~~~~~~~~ 231 (479)
+++|+.|+.|++||+ .++ + ...+.+ |...|.+++|+| +++|++++.|+.|++||+.+ ++.+..+.
T Consensus 72 l~~~~~dg~i~~wd~~~~~-~-~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 148 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSP-S-FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK 148 (342)
T ss_dssp EEEEETTSCEEEECSSSSS-S-EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred EEEEcCCCeEEEEEeccCC-c-eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe
Confidence 999999999999999 776 3 477888 999999999999 99999999999999999988 77777777
Q ss_pred cCCceeEEEeCCCEE-EEEcCCeEEEEEcCC-Cce---EEecCCCccEEEEEEcC-C--EEEEEeCCCcEEEEEccCCC-
Q 011711 232 LGAEVGSLICEGPWV-FVGMPNVVKAWHIES-SAE---FSLDGPVGEVYSMVVAN-E--MLFAGAQDGNILVWKGIPNT- 302 (479)
Q Consensus 232 ~~~~~~~~~~~~~~l-~~~~~~~i~v~~~~~-~~~---~~~~~~~~~v~~~~~~~-~--~l~~g~~dg~i~iwd~~~~~- 302 (479)
....+.++...+..+ +++.++.|++||+++ ... .....+...+.++++++ + .+++++.||.|++|++....
T Consensus 149 ~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~ 228 (342)
T 1yfq_A 149 VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD 228 (342)
T ss_dssp SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC
T ss_pred eCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCc
Confidence 777788877754444 456889999999998 443 24557888999999998 5 99999999999999998751
Q ss_pred CCcccceeeecCCCC---------CeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCC-CCCcEEEEEcCCEEE
Q 011711 303 QNPFQLAALLKGHTR---------PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGH-TDAPMSLLCWDQYLL 370 (479)
Q Consensus 303 ~~~~~~~~~~~~h~~---------~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~l~ 370 (479)
....+....+..|.. .|.+++|+ +++|++++.||.|++||+++++.+..+..| ...|.++..++++|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~ 308 (342)
T 1yfq_A 229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILC 308 (342)
T ss_dssp STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEE
T ss_pred ccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEecCCCCeEE
Confidence 000123556666755 99999996 889999999999999999999999999998 999999996689999
Q ss_pred EEeCCCe-EEEEE
Q 011711 371 SCSLDNT-IKVWI 382 (479)
Q Consensus 371 s~s~dg~-i~iwd 382 (479)
+++.||. .+.+.
T Consensus 309 s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 309 LATSDDTFKTNAA 321 (342)
T ss_dssp EEEECTHHHHCSS
T ss_pred EEecCCccccccc
Confidence 9999998 55554
No 101
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=2.4e-29 Score=241.69 Aligned_cols=283 Identities=14% Similarity=0.142 Sum_probs=206.4
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCee
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 164 (479)
+..+|...|++++|+|||+++|+|+.|| ++||+
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~---------------------------------------------- 46 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYN---------------------------------------------- 46 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEE----------------------------------------------
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEe----------------------------------------------
Confidence 4577888999999999999998888554 56774
Q ss_pred EeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEE-EEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCC
Q 011711 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKL-YSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEG 243 (479)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l-~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 243 (479)
+++. +..... +...+..+++.++++.+ ++++.|++|++||+.+++.+..+.....+.++....
T Consensus 47 -------------~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~ 110 (355)
T 3vu4_A 47 -------------VHPV-AHIMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSR 110 (355)
T ss_dssp -------------ETTE-EEEEEE--ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred -------------cCCc-ceeeee--ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcC
Confidence 2222 112111 12246777888888877 567788999999999999999999988999999988
Q ss_pred CEEEEEcCCeEEEEEcCCC-ceEE-ecCCCccEEEEEEcCCEEEE--EeCCCcEEEEEccCCCC----------Ccccc-
Q 011711 244 PWVFVGMPNVVKAWHIESS-AEFS-LDGPVGEVYSMVVANEMLFA--GAQDGNILVWKGIPNTQ----------NPFQL- 308 (479)
Q Consensus 244 ~~l~~~~~~~i~v~~~~~~-~~~~-~~~~~~~v~~~~~~~~~l~~--g~~dg~i~iwd~~~~~~----------~~~~~- 308 (479)
..++++.++.|++||+.+. +.+. +.. ....+++++..+++ |+.||.|++||+.++.. ...++
T Consensus 111 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~ 187 (355)
T 3vu4_A 111 EFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGK 187 (355)
T ss_dssp SEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEETTEEEEEESSCTTCEEEEECCC------------------C
T ss_pred CEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcc
Confidence 8888889999999999987 4332 222 34445566686666 58999999999987531 00112
Q ss_pred eeeecCCCCCeEEEEEc--CCEEEEEeCCCe-EEEEECCCCcEEEEEe-C-CCCCcEEEEEc--CCEEEEEeCCCeEEEE
Q 011711 309 AALLKGHTRPVTCLAVG--GKRLYSGSMDNT-IRVWDLDTLEAVMTLN-G-HTDAPMSLLCW--DQYLLSCSLDNTIKVW 381 (479)
Q Consensus 309 ~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~-I~iwd~~~~~~~~~~~-~-h~~~v~~~~~~--~~~l~s~s~dg~i~iw 381 (479)
...+.+|..+|.+++|+ +.+|++|+.|++ |++||+++++++.++. + |...|.+++++ +++|++++.|++|++|
T Consensus 188 ~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw 267 (355)
T 3vu4_A 188 GVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVF 267 (355)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEE
T ss_pred cEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEE
Confidence 67789999999999997 899999999998 9999999999999998 5 99999999998 7899999999999999
Q ss_pred EcCCCcce--EEecc-----c------------cCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCc
Q 011711 382 IMTEEGNL--EVAYT-----H------------NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFM 434 (479)
Q Consensus 382 d~~~~~~~--~~~~~-----~------------~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 434 (479)
|++..... ..+.. . ..........+.|+++++ .+++++.||.+++|++..++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~-~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 268 EIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS-LVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp ESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE-EEEEETTTTEEEEEEEEEET
T ss_pred EccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCC-EEEEEeCCCeEEEEEEEcCC
Confidence 99765321 11100 0 000000001234568887 88889999999999986543
No 102
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=1.2e-28 Score=232.36 Aligned_cols=276 Identities=18% Similarity=0.263 Sum_probs=214.9
Q ss_pred CCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCC--CeEEEeccCCeeEeCCCCC
Q 011711 94 PSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP--KNVCYHWLSGNCVKGDECR 171 (479)
Q Consensus 94 ~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~~~~~~~g~~d~ 171 (479)
+.++||+++ .||.|. |++|+|||..+.... .. ..++.+.. ..+++.+....+++|+.|+
T Consensus 29 ~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~----~~-------------~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg 89 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVAL-DNSVYLWSASSGDIL----QL-------------LQMEQPGEYISSVAWIKEGNYLAVGTSSA 89 (318)
T ss_dssp BCEEECTTS-EEEEEE-TTEEEEEETTTCCEE----EE-------------EECCSTTCCEEEEEECTTSSEEEEEETTS
T ss_pred eEEEECCCC-EEEEEe-CCEEEEEECCCCCEE----EE-------------EEecCCCCeEEEEEECCCCCEEEEEECCC
Confidence 568999987 688776 999999986654320 00 01112222 3456666778999999999
Q ss_pred eEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcC
Q 011711 172 FWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMP 251 (479)
Q Consensus 172 ~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (479)
+|++|++.++ +.+..+.+|...+.++.+ ++..+++++.++.+++|+...+....
T Consensus 90 ~v~iw~~~~~-~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~----------------------- 143 (318)
T 4ggc_A 90 EVQLWDVQQQ-KRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHV----------------------- 143 (318)
T ss_dssp EEEEEETTTT-EEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEE-----------------------
T ss_pred cEEEeecCCc-eeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeE-----------------------
Confidence 9999999998 889999999999987765 57799999999999999987764332
Q ss_pred CeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---C
Q 011711 252 NVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---G 326 (479)
Q Consensus 252 ~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~ 326 (479)
..+.+|...+..+.+.++ .+++++.||.|++||+.++... .........|...|.++.+. .
T Consensus 144 -------------~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 209 (318)
T 4ggc_A 144 -------------ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG-WVPLQTFTQHQGAVKAVAWCPWQS 209 (318)
T ss_dssp -------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB-SCCSEEECCCCSCEEEEEECTTST
T ss_pred -------------EEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc-ccceeeecccCCceEEEEecCCCC
Confidence 223468888889998876 9999999999999999876532 23345567788999999985 4
Q ss_pred CEE--EEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEe--CCCeEEEEEcCCCcceEEeccccCccc
Q 011711 327 KRL--YSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCS--LDNTIKVWIMTEEGNLEVAYTHNEDHG 400 (479)
Q Consensus 327 ~~l--~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~ 400 (479)
..+ ++++.+++|++||.+......... +...+..+.+. ++.+++++ .|+.|++||+++++.+..+..|...+.
T Consensus 210 ~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~ 288 (318)
T 4ggc_A 210 NVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVL 288 (318)
T ss_dssp TEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEE
T ss_pred cEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence 443 466789999999999988776665 55567777766 56666554 799999999999999999988888776
Q ss_pred eEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCc
Q 011711 401 VLALGGLNDPDGNPVLICSCNDDSVHLYELPSFM 434 (479)
Q Consensus 401 ~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 434 (479)
.+++ +|+++ +|++++.|++|+|||+.+..
T Consensus 289 ~l~~----spdg~-~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 289 SLTM----SPDGA-TVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEE----CTTSS-CEEEEETTTEEEEECCSCCC
T ss_pred EEEE----cCCCC-EEEEEecCCeEEEEECCCCC
Confidence 6665 59998 89999999999999997653
No 103
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-28 Score=242.62 Aligned_cols=285 Identities=12% Similarity=0.047 Sum_probs=217.5
Q ss_pred CCCeEEEeccCCeeEeCCCCCeEEEeecCCCc--eeeEEEec--------------------------------------
Q 011711 151 TPKNVCYHWLSGNCVKGDECRFWHSWFCGEGF--TMLAKLEG-------------------------------------- 190 (479)
Q Consensus 151 ~~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~--~~~~~~~~-------------------------------------- 190 (479)
+...+++.+.+..++ ++.++.|++||+.++. +.+..+..
T Consensus 6 p~~~v~~s~dg~~l~-~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVF-AIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCEEEECSSSSEEE-EEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred cEEEEEecCCCCEEE-EEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 335666666666444 4467899999998883 14555543
Q ss_pred ----------------ccccEEEEEeCCCCCEE-EEEeCCCcEEEEECC--CCceEEEEecCCceeEEEeCCCEEEEEcC
Q 011711 191 ----------------HKKAVSGIALPLRSDKL-YSGSRDGTVQLWDCH--TGQSASVINLGAEVGSLICEGPWVFVGMP 251 (479)
Q Consensus 191 ----------------H~~~V~~l~~s~~~~~l-~s~s~Dg~v~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (479)
|.+.|++++|+|++++| ++++.||+|++||+. +++.+..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-------------------- 144 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-------------------- 144 (450)
T ss_dssp ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE--------------------
T ss_pred cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee--------------------
Confidence 33479999999999996 899999999999998 777665542
Q ss_pred CeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc----
Q 011711 252 NVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---- 325 (479)
Q Consensus 252 ~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---- 325 (479)
...+...|.+++|+++ +|++|+.+|.|++|++....... .....+.+|...|.+++|+
T Consensus 145 ---------------~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~sp~~~ 208 (450)
T 2vdu_B 145 ---------------RFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEK-FTQEPILGHVSMLTDVHLIKDSD 208 (450)
T ss_dssp ---------------EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSS-CCCCCSEECSSCEEEEEEEECTT
T ss_pred ---------------cccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccc-ccceeeecccCceEEEEEcCCCC
Confidence 1235678999999987 99999999999999998765310 0334677899999999996
Q ss_pred -CCEEEEEeCCCeEEEEECCCCcEEEE-EeCCCCCcEEEEEc-CCEEEEEeCCCeEEEEEcCCCcceEEeccccC-----
Q 011711 326 -GKRLYSGSMDNTIRVWDLDTLEAVMT-LNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNE----- 397 (479)
Q Consensus 326 -~~~l~sgs~dg~I~iwd~~~~~~~~~-~~~h~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----- 397 (479)
+.+|++|+.|+.|++||+++++.+.. +.+|...|.++.++ +++|++++.|+.|++||+.+++.+..+..+..
T Consensus 209 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~ 288 (450)
T 2vdu_B 209 GHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYL 288 (450)
T ss_dssp SCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGC
T ss_pred CCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhh
Confidence 44899999999999999999998888 56899999999996 88999999999999999999887766653210
Q ss_pred ----------------ccceEEEeeeeCCCCCcEEEEEe-CCCeEEEeec--CCC---ceeeeeeccCceEEEEECCCce
Q 011711 398 ----------------DHGVLALGGLNDPDGNPVLICSC-NDDSVHLYEL--PSF---MERGRIFSRREVRVIETGPDGL 455 (479)
Q Consensus 398 ----------------~~~~~~~~~~~~~~~~~~l~s~~-~dg~v~iwd~--~~~---~~~~~~~~~~~v~~l~~s~~g~ 455 (479)
........+.++|+++ ++++++ .|+.|++|++ .+. +.+..+.....|.+++|+|++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~ 367 (450)
T 2vdu_B 289 NDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP-FVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEF 367 (450)
T ss_dssp CTTSBC----------CBCCCEEEEEECSSSS-EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEE
T ss_pred hhcccccccccccccccceEEEEEEEEeCCCC-EEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcE
Confidence 1111123344568888 666666 8999999999 555 5556666678999999999875
Q ss_pred EEEEcC-------CCcEEEEEeccC
Q 011711 456 FFTGDG-------TGMLSVWKILAK 473 (479)
Q Consensus 456 l~sg~~-------dg~v~vw~~~~~ 473 (479)
+++.+. +..|.+|.+...
T Consensus 368 ~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 368 QVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp EEEECCTTCCSSCCCSEEEEEEETT
T ss_pred EEEEecccCCCCCCcceEEEEEEcC
Confidence 555433 566899988754
No 104
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5e-30 Score=257.42 Aligned_cols=263 Identities=12% Similarity=0.040 Sum_probs=198.1
Q ss_pred eeEEEecccccEEEEEeCCCC---------CEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEE-EEcCCe
Q 011711 184 MLAKLEGHKKAVSGIALPLRS---------DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVF-VGMPNV 253 (479)
Q Consensus 184 ~~~~~~~H~~~V~~l~~s~~~---------~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~ 253 (479)
....+. +.+.|.+|+|+|++ ++||+|+.++.. . ...+++..++ ++.|+.
T Consensus 126 ~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------~------------~~~~~~~~laS~s~D~t 184 (524)
T 2j04_B 126 RGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------E------------PLNEHLEMFDKEKHSSC 184 (524)
T ss_dssp CEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------------------------CEE
T ss_pred ceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------C------------ccchhhhhhccCCCCce
Confidence 333444 67899999999887 799998876531 0 0124444454 358899
Q ss_pred EEEEEcCCCce-----EEecCCCccEEEEEEcCC--------EEEEEeCCCcEEEEEccCCCCC------cccceeeecC
Q 011711 254 VKAWHIESSAE-----FSLDGPVGEVYSMVVANE--------MLFAGAQDGNILVWKGIPNTQN------PFQLAALLKG 314 (479)
Q Consensus 254 i~v~~~~~~~~-----~~~~~~~~~v~~~~~~~~--------~l~~g~~dg~i~iwd~~~~~~~------~~~~~~~~~~ 314 (479)
|++|++.+++. ..+..|.+.|.+++|+|+ +|++++.||+|++||+..+... ..++...+.+
T Consensus 185 I~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~ 264 (524)
T 2j04_B 185 IQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSL 264 (524)
T ss_dssp EEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECC
T ss_pred EEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEc
Confidence 99999987764 235567889999999974 8999999999999999765421 1123456788
Q ss_pred CCCCeEEEEEc-CCEEEEEeCCCeEEEEECCCC-cEEEEEeCCCCCcEEEE--Ec--C-CEEEEEeCCCeEEEEEcCCCc
Q 011711 315 HTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTL-EAVMTLNGHTDAPMSLL--CW--D-QYLLSCSLDNTIKVWIMTEEG 387 (479)
Q Consensus 315 h~~~i~~l~~~-~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~v~~~~--~~--~-~~l~s~s~dg~i~iwd~~~~~ 387 (479)
|...|++++|+ ++.|++|+.||+|++||++++ .+...+.+|...|.+++ +. + .+|++++.|++|++||+++.+
T Consensus 265 h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~ 344 (524)
T 2j04_B 265 ADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA 344 (524)
T ss_dssp TTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH
T ss_pred CCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC
Confidence 99999999997 679999999999999999976 45567899999999994 34 4 689999999999999998877
Q ss_pred ceEEeccccC--ccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEECCCc-eEEEEcCCC
Q 011711 388 NLEVAYTHNE--DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDG-LFFTGDGTG 463 (479)
Q Consensus 388 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sg~~dg 463 (479)
....+..+.. .+..+++ +|+++ .+++++.|++|++||++++.....+. |.+.|.+++|+|+| .|++|+.||
T Consensus 345 ~~~~~~~~~~~~~v~~v~f----sp~~~-~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dg 419 (524)
T 2j04_B 345 TTKTTVSRFRGSNLVPVVY----CPQIY-SYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADG 419 (524)
T ss_dssp HHCEEEEECSCCSCCCEEE----ETTTT-EEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTT
T ss_pred cccccccccccCcccceEe----CCCcC-eEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCC
Confidence 6655555543 2334444 59988 78889999999999999988765554 68899999999999 999999999
Q ss_pred cEEEEEecc
Q 011711 464 MLSVWKILA 472 (479)
Q Consensus 464 ~v~vw~~~~ 472 (479)
+|++|++..
T Consensus 420 tv~lwd~~~ 428 (524)
T 2j04_B 420 SLIITNAAR 428 (524)
T ss_dssp EEECCBSCS
T ss_pred EEEEEechH
Confidence 999999754
No 105
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.3e-29 Score=239.65 Aligned_cols=267 Identities=11% Similarity=0.014 Sum_probs=208.9
Q ss_pred ccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeE
Q 011711 159 WLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS 238 (479)
Q Consensus 159 ~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~ 238 (479)
.....+++|+.|+.|++||+.++ +.+..+. ...|.++.|+|+ +++++.|++|++|+...
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~-~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~--------------- 104 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDS-KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN--------------- 104 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSS-SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT---------------
T ss_pred CCCCEEEEECCCCcEEEEECCCC-cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC---------------
Confidence 34558999999999999999988 6666666 677889999988 99999999999999764
Q ss_pred EEeCCCEEEEEcCCeEEEEEcCCCceEE-e-cCCCccEEEEEEcC--C--EEEEEeCCCcEEEEEccCCCCCcccceeee
Q 011711 239 LICEGPWVFVGMPNVVKAWHIESSAEFS-L-DGPVGEVYSMVVAN--E--MLFAGAQDGNILVWKGIPNTQNPFQLAALL 312 (479)
Q Consensus 239 ~~~~~~~l~~~~~~~i~v~~~~~~~~~~-~-~~~~~~v~~~~~~~--~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 312 (479)
.+.+|++.+++.+. . ..|...|.++++++ + ++++|+.||.|++||+.++.. ....
T Consensus 105 --------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----~~~~ 165 (343)
T 3lrv_A 105 --------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-----YIVH 165 (343)
T ss_dssp --------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-----EEEE
T ss_pred --------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-----EEEE
Confidence 34567887777432 2 36678899999988 5 899999999999999987643 3333
Q ss_pred -cCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEE-EEEeC-CCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCC
Q 011711 313 -KGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAV-MTLNG-HTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTE 385 (479)
Q Consensus 313 -~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~-~~~~~-h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~ 385 (479)
..|...|.+++|+ +.+|++|+.||.|++||+++++.+ ..+.. |...|.++.++ +.+|++++ |+.|++||+++
T Consensus 166 ~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~ 244 (343)
T 3lrv_A 166 SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRK 244 (343)
T ss_dssp CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTS
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCC
Confidence 3456689999997 889999999999999999999988 88888 99999999997 67999999 55999999998
Q ss_pred CcceEEecc---ccCccceEEEeeeeCCCCCcEEEEEeC-CCeEEEeecCCCceeeeeeccCceEEEEECC---Cc-eEE
Q 011711 386 EGNLEVAYT---HNEDHGVLALGGLNDPDGNPVLICSCN-DDSVHLYELPSFMERGRIFSRREVRVIETGP---DG-LFF 457 (479)
Q Consensus 386 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~---~g-~l~ 457 (479)
......+.. +...... .++.++|+++ +|++++. |+.|++|++......... .++..+.|.+ +. .++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~-~l~~~s~~d~~i~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~ 318 (343)
T 3lrv_A 245 DVGTLAYPTYTIPEFKTGT--VTYDIDDSGK-NMIAYSNESNSLTIYKFDKKTKNWTK---DEESALCLQSDTADFTDMD 318 (343)
T ss_dssp STTCBSSCCCBC-----CC--EEEEECTTSS-EEEEEETTTTEEEEEEECTTTCSEEE---EEEEECCC----CCCCEEE
T ss_pred CCcceeecccccccccccc--eEEEECCCCC-EEEEecCCCCcEEEEEEcccccceEe---cCceeEecCccccccceeE
Confidence 876544433 2122222 2345679998 7777777 999999999776544333 6778889988 77 899
Q ss_pred EEcCCCcEEEEEecc
Q 011711 458 TGDGTGMLSVWKILA 472 (479)
Q Consensus 458 sg~~dg~v~vw~~~~ 472 (479)
+++.||.+.++-...
T Consensus 319 ~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 319 VVCGDGGIAAILKTN 333 (343)
T ss_dssp EEEETTEEEEEEECS
T ss_pred EEecCCceEEEEecC
Confidence 999999999886544
No 106
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=9.3e-29 Score=244.04 Aligned_cols=269 Identities=16% Similarity=0.222 Sum_probs=205.3
Q ss_pred EEEeecCCCceeeEEEecccccEEEEEeCCC-CCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcC
Q 011711 173 WHSWFCGEGFTMLAKLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMP 251 (479)
Q Consensus 173 i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~-~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (479)
+..+...++.-......+|.+.|++++|+|+ +.+|++++.||.|++||+.+.......
T Consensus 109 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~--------------------- 167 (430)
T 2xyi_A 109 FGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP--------------------- 167 (430)
T ss_dssp ---------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT---------------------
T ss_pred cccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc---------------------
Confidence 3334333332234556789999999999997 789999999999999999763110000
Q ss_pred CeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCC--cccceeeecCCCCCeEEEEEc-
Q 011711 252 NVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQN--PFQLAALLKGHTRPVTCLAVG- 325 (479)
Q Consensus 252 ~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~--~~~~~~~~~~h~~~i~~l~~~- 325 (479)
+........+.+|...|.+++|+++ .|++|+.||.|++||+...... .......+.+|...|.+++|+
T Consensus 168 ------~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p 241 (430)
T 2xyi_A 168 ------SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHL 241 (430)
T ss_dssp ------TCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECS
T ss_pred ------cccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeC
Confidence 0000112345578889999999876 8999999999999999874321 122345677899999999996
Q ss_pred --CCEEEEEeCCCeEEEEECCCC---cEEEEEeCCCCCcEEEEEc--CC-EEEEEeCCCeEEEEEcCC-CcceEEecccc
Q 011711 326 --GKRLYSGSMDNTIRVWDLDTL---EAVMTLNGHTDAPMSLLCW--DQ-YLLSCSLDNTIKVWIMTE-EGNLEVAYTHN 396 (479)
Q Consensus 326 --~~~l~sgs~dg~I~iwd~~~~---~~~~~~~~h~~~v~~~~~~--~~-~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~ 396 (479)
+.+|++++.||.|++||++++ +.+..+..|...|.++.++ +. ++++++.||.|++||+++ ...+..+..|.
T Consensus 242 ~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~ 321 (430)
T 2xyi_A 242 LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 321 (430)
T ss_dssp SCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCS
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCC
Confidence 678999999999999999987 6788888999999999998 43 799999999999999998 45566666677
Q ss_pred CccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCC--------------ceeeeee-ccCceEEEEECCCc--eEEEE
Q 011711 397 EDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSF--------------MERGRIF-SRREVRVIETGPDG--LFFTG 459 (479)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--------------~~~~~~~-~~~~v~~l~~s~~g--~l~sg 459 (479)
..+..+.+ +|+++.++++++.|+.|++||+... +.+.... |...|.+++|+|++ +|+++
T Consensus 322 ~~v~~i~~----sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~ 397 (430)
T 2xyi_A 322 DEIFQVQW----SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV 397 (430)
T ss_dssp SCEEEEEE----CSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEE
T ss_pred CCEEEEEE----CCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEE
Confidence 66655555 6999879999999999999999872 3333332 46779999999998 79999
Q ss_pred cCCCcEEEEEecc
Q 011711 460 DGTGMLSVWKILA 472 (479)
Q Consensus 460 ~~dg~v~vw~~~~ 472 (479)
+.||.|++|++..
T Consensus 398 s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 398 SEDNIMQVWQMAE 410 (430)
T ss_dssp ETTSEEEEEEECH
T ss_pred ECCCCEEEeEccc
Confidence 9999999999975
No 107
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=2.8e-28 Score=234.53 Aligned_cols=250 Identities=15% Similarity=0.200 Sum_probs=200.2
Q ss_pred ceeeEEEecccccEEEEEeCCC---CCEEEEEeCCCcEEEEECCC-CceEEEEecCCceeEEEeCCCEEEEEcCCeEEEE
Q 011711 182 FTMLAKLEGHKKAVSGIALPLR---SDKLYSGSRDGTVQLWDCHT-GQSASVINLGAEVGSLICEGPWVFVGMPNVVKAW 257 (479)
Q Consensus 182 ~~~~~~~~~H~~~V~~l~~s~~---~~~l~s~s~Dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~ 257 (479)
.+.+..+.+|.+.|++++|+|+ +++|++|+.||.|++||+.+ ++...
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~----------------------------- 79 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP----------------------------- 79 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE-----------------------------
T ss_pred cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE-----------------------------
Confidence 3678889999999999999999 59999999999999999987 43331
Q ss_pred EcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEE--c--CCEEEE
Q 011711 258 HIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV--G--GKRLYS 331 (479)
Q Consensus 258 ~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~--~--~~~l~s 331 (479)
..+.+|...|.+++|+++ +|++++.||.|++||+.++. ...+..|...|.+++| + +.+|++
T Consensus 80 -------~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~l~~ 146 (368)
T 3mmy_A 80 -------KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ------AIQIAQHDAPVKTIHWIKAPNYSCVMT 146 (368)
T ss_dssp -------EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE------EEEEEECSSCEEEEEEEECSSCEEEEE
T ss_pred -------EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC------ceeeccccCceEEEEEEeCCCCCEEEE
Confidence 123458889999999987 89999999999999998764 2335679999999999 5 678999
Q ss_pred EeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCC
Q 011711 332 GSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPD 411 (479)
Q Consensus 332 gs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (479)
++.||.|++||+++++++..+..+. .+.++.+.+..+++++.++.+++|+++...................+.....+.
T Consensus 147 ~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (368)
T 3mmy_A 147 GSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQ 225 (368)
T ss_dssp EETTSEEEEECSSCSSCSEEEECSS-CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTT
T ss_pred ccCCCcEEEEECCCCcEEEEEecCC-CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCC
Confidence 9999999999999999999998765 677888888999999999999999998776544444333333333333333333
Q ss_pred C-CcEEEEEeCCCeEEEeecCCC---ceeeeeeccC-------------ceEEEEECCCc-eEEEEcCCCcEEEEEeccC
Q 011711 412 G-NPVLICSCNDDSVHLYELPSF---MERGRIFSRR-------------EVRVIETGPDG-LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 412 ~-~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~-------------~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~ 473 (479)
. ...+++++.|+.|++||++.. .....+.... .|.+++|+|++ +|++|+.||.|++||+.++
T Consensus 226 ~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 226 NKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp SCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred CCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence 2 124889999999999999887 3344444322 69999999999 9999999999999999865
Q ss_pred C
Q 011711 474 P 474 (479)
Q Consensus 474 ~ 474 (479)
+
T Consensus 306 ~ 306 (368)
T 3mmy_A 306 T 306 (368)
T ss_dssp E
T ss_pred c
Confidence 3
No 108
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=5.5e-30 Score=248.06 Aligned_cols=239 Identities=15% Similarity=0.091 Sum_probs=185.9
Q ss_pred EEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCc--eEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCce
Q 011711 187 KLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ--SASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAE 264 (479)
Q Consensus 187 ~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~ 264 (479)
.++.|.++|++++|+|++++|++++.|+.|++||+.++. .+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~------------------------------------ 49 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR------------------------------------ 49 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC------------------------------------
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE------------------------------------
Confidence 345577899999999999999999999999999998763 221
Q ss_pred EEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEE
Q 011711 265 FSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRV 340 (479)
Q Consensus 265 ~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~i 340 (479)
.+.+|...|.+++|+++ +|++++.||.|++||+.++.. ......+..|...|.+++|+ +++|++++.|+.|++
T Consensus 50 -~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 126 (377)
T 3dwl_C 50 -TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT--WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISV 126 (377)
T ss_dssp -CBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C--CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEE
T ss_pred -EEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc--eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEE
Confidence 23468899999999987 899999999999999988651 23466678899999999996 889999999999999
Q ss_pred EECCCCc---EEEEEeC-CCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCC------------------cceEEecccc
Q 011711 341 WDLDTLE---AVMTLNG-HTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEE------------------GNLEVAYTHN 396 (479)
Q Consensus 341 wd~~~~~---~~~~~~~-h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~------------------~~~~~~~~~~ 396 (479)
||+++++ ....+.. |...|.++.++ +++|++++.|+.|++||++.. ..+..+ .|.
T Consensus 127 wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 205 (377)
T 3dwl_C 127 CYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG 205 (377)
T ss_dssp CCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS
T ss_pred EEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC
Confidence 9999887 4778887 99999999998 679999999999999998632 222222 444
Q ss_pred CccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCce----eeeee-ccCceEEEEECCCc-eEEEEcCCCcEEEEEe
Q 011711 397 EDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFME----RGRIF-SRREVRVIETGPDG-LFFTGDGTGMLSVWKI 470 (479)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~----~~~~~-~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~ 470 (479)
..+..+. ++|+++ +|++++.|+.|++||+.+++. +..+. +...|.+++|+|++ +|++|+.|+.+ +|+.
T Consensus 206 ~~v~~~~----~sp~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~ 279 (377)
T 3dwl_C 206 GWVHAVG----FSPSGN-ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQG 279 (377)
T ss_dssp SSEEEEE----ECTTSS-CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred ceEEEEE----ECCCCC-EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence 4444444 469998 888999999999999999887 55554 46789999999999 77787766655 7776
Q ss_pred c
Q 011711 471 L 471 (479)
Q Consensus 471 ~ 471 (479)
.
T Consensus 280 ~ 280 (377)
T 3dwl_C 280 N 280 (377)
T ss_dssp C
T ss_pred C
Confidence 5
No 109
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=2.7e-28 Score=241.64 Aligned_cols=274 Identities=12% Similarity=0.205 Sum_probs=207.2
Q ss_pred CeEEEeccCCeeEeCCCCCeEEEeecCCCc----------eeeEEEeccc------------ccEEEEEeCCCC--CEEE
Q 011711 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGF----------TMLAKLEGHK------------KAVSGIALPLRS--DKLY 208 (479)
Q Consensus 153 ~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~----------~~~~~~~~H~------------~~V~~l~~s~~~--~~l~ 208 (479)
..+++.+.+..+++|+.|+.|++|++.++. +.+..+.+|. +.|++++|+|++ .+|+
T Consensus 32 ~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~ 111 (447)
T 3dw8_B 32 STVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFL 111 (447)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEE
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEE
Confidence 456677777899999999999999998763 2688899998 889999999998 7999
Q ss_pred EEeCCCcEEEEECCCCceEE---------------------------------------EE--ecCCceeEEE--eCCCE
Q 011711 209 SGSRDGTVQLWDCHTGQSAS---------------------------------------VI--NLGAEVGSLI--CEGPW 245 (479)
Q Consensus 209 s~s~Dg~v~vwd~~~~~~~~---------------------------------------~~--~~~~~~~~~~--~~~~~ 245 (479)
+++.|++|++||+.+++... .+ .+...+.++. +++++
T Consensus 112 s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 191 (447)
T 3dw8_B 112 LSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYET 191 (447)
T ss_dssp EEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSE
T ss_pred EeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCE
Confidence 99999999999997654321 11 2334455555 47889
Q ss_pred EEEEcCCeEEEEEcCC-CceEE--------ecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeec
Q 011711 246 VFVGMPNVVKAWHIES-SAEFS--------LDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLK 313 (479)
Q Consensus 246 l~~~~~~~i~v~~~~~-~~~~~--------~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 313 (479)
++++.|+.|++||++. ..... +..|...|.+++|+++ +|++|+.||.|++||++++... ......+.
T Consensus 192 l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~ 270 (447)
T 3dw8_B 192 YLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC-DRHSKLFE 270 (447)
T ss_dssp EEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS-CTTCEEEC
T ss_pred EEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc-cceeeEec
Confidence 9888999999999994 33333 4588999999999975 8999999999999999886531 12246677
Q ss_pred CCCC------------CeEEEEEc--CCEEEEEeCCCeEEEEECCC-CcEEEEEeCCCCCc---------------EEEE
Q 011711 314 GHTR------------PVTCLAVG--GKRLYSGSMDNTIRVWDLDT-LEAVMTLNGHTDAP---------------MSLL 363 (479)
Q Consensus 314 ~h~~------------~i~~l~~~--~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~~~v---------------~~~~ 363 (479)
.|.. .|.+++|+ +.+|++++. +.|++||+++ ++++..+..|...+ ..+.
T Consensus 271 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~ 349 (447)
T 3dw8_B 271 EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECC 349 (447)
T ss_dssp CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEE
T ss_pred cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEE
Confidence 7775 99999997 889999998 9999999997 88889998886422 2255
Q ss_pred Ec--CCEEEEEeCCCeEEEEEcCCCcceEEeccccC-----------------------------ccceEEEeeeeCCCC
Q 011711 364 CW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNE-----------------------------DHGVLALGGLNDPDG 412 (479)
Q Consensus 364 ~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~ 412 (479)
++ +++|++++.||.|++||+.+++.+.. ..+.. ........+.|+|++
T Consensus 350 ~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 428 (447)
T 3dw8_B 350 WNGSDSVVMTGSYNNFFRMFDRNTKRDITL-EASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKE 428 (447)
T ss_dssp ECTTSSEEEEECSTTEEEEEETTTCCEEEE-ECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSS
T ss_pred ECCCCCEEEEeccCCEEEEEEcCCCcceee-eecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCC
Confidence 55 78999999999999999998765432 21110 001112334567999
Q ss_pred CcEEEEEeCCCeEEEeecC
Q 011711 413 NPVLICSCNDDSVHLYELP 431 (479)
Q Consensus 413 ~~~l~s~~~dg~v~iwd~~ 431 (479)
+ +|++++.++ +++|..+
T Consensus 429 ~-~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 429 N-IIAVATTNN-LYIFQDK 445 (447)
T ss_dssp S-EEEEECSSC-EEEEECC
T ss_pred C-EEEEEecce-eeeeccc
Confidence 8 788887665 7888643
No 110
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.2e-29 Score=261.20 Aligned_cols=246 Identities=16% Similarity=0.236 Sum_probs=197.5
Q ss_pred eEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCce
Q 011711 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAE 264 (479)
Q Consensus 185 ~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~ 264 (479)
+..+.+|.+.|++++|+|++++|++|+.||+|++||+.++.....
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~----------------------------------- 46 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI----------------------------------- 46 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEE-----------------------------------
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccc-----------------------------------
Confidence 456889999999999999999999999999999999874332111
Q ss_pred EEecCCCccEEEEEEcC----CEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc----CCEEEEEeCCC
Q 011711 265 FSLDGPVGEVYSMVVAN----EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG----GKRLYSGSMDN 336 (479)
Q Consensus 265 ~~~~~~~~~v~~~~~~~----~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~----~~~l~sgs~dg 336 (479)
..+.+|...|.+++|++ +.|++|+.||.|++||+.++. ......+.+|...|++++|+ ++.+++|+.||
T Consensus 47 ~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~---~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 123 (753)
T 3jro_A 47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR---WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123 (753)
T ss_dssp EEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE---EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred eeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc---ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence 23457899999999974 389999999999999998764 23467788899999999996 67999999999
Q ss_pred eEEEEECCCC--cEEEEEeCCCCCcEEEEEc---------------CCEEEEEeCCCeEEEEEcCCCcc----eEEeccc
Q 011711 337 TIRVWDLDTL--EAVMTLNGHTDAPMSLLCW---------------DQYLLSCSLDNTIKVWIMTEEGN----LEVAYTH 395 (479)
Q Consensus 337 ~I~iwd~~~~--~~~~~~~~h~~~v~~~~~~---------------~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~ 395 (479)
.|++||++++ .....+.+|...|.++.+. +.++++++.||.|++||+++... ...+..|
T Consensus 124 ~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h 203 (753)
T 3jro_A 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203 (753)
T ss_dssp EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC
Confidence 9999999887 3456678899999999986 46899999999999999987743 3344556
Q ss_pred cCccceEEEeeeeCCC---CCcEEEEEeCCCeEEEeecCCCce------eeeeeccCceEEEEECCCc-eEEEEcCCCcE
Q 011711 396 NEDHGVLALGGLNDPD---GNPVLICSCNDDSVHLYELPSFME------RGRIFSRREVRVIETGPDG-LFFTGDGTGML 465 (479)
Q Consensus 396 ~~~~~~~~~~~~~~~~---~~~~l~s~~~dg~v~iwd~~~~~~------~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~v 465 (479)
...+..+.+ +|+ +. ++++++.||.|++||+.+++. .....+...|.+++|+|+| +|++|+.||.|
T Consensus 204 ~~~V~~l~~----sp~~~~~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I 278 (753)
T 3jro_A 204 SDWVRDVAW----SPTVLLRS-YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV 278 (753)
T ss_dssp SSCEEEEEE----CCCCSSSE-EEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCE
T ss_pred CCcEEEEEe----ccCCCCCC-EEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEE
Confidence 665555554 588 55 899999999999999988642 2222357889999999999 99999999999
Q ss_pred EEEEeccC
Q 011711 466 SVWKILAK 473 (479)
Q Consensus 466 ~vw~~~~~ 473 (479)
++|++..+
T Consensus 279 ~vwd~~~~ 286 (753)
T 3jro_A 279 TLWKENLE 286 (753)
T ss_dssp ECCBCCSS
T ss_pred EEEecCCC
Confidence 99999853
No 111
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=6.8e-29 Score=241.93 Aligned_cols=253 Identities=10% Similarity=-0.020 Sum_probs=166.4
Q ss_pred EEeccCCeeEeCCCCCeEEEeecCCCc----eeeEEEecccccEEEEEeCC--------CCCEEEEEeCCCcEEEEECCC
Q 011711 156 CYHWLSGNCVKGDECRFWHSWFCGEGF----TMLAKLEGHKKAVSGIALPL--------RSDKLYSGSRDGTVQLWDCHT 223 (479)
Q Consensus 156 c~~~~~~~~~~g~~d~~i~vw~~~~~~----~~~~~~~~H~~~V~~l~~s~--------~~~~l~s~s~Dg~v~vwd~~~ 223 (479)
++.+....+++|+.|++|++||..++. ..+..+.||.+.|.+++|+| |+++|||+|.|++|+|||+.+
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 444455578999999999999998772 23345789999999999987 889999999999999999987
Q ss_pred CceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccC
Q 011711 224 GQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIP 300 (479)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~ 300 (479)
+.....+ ..|...+.+++|+|+ +|++|+.||.|++||+.+
T Consensus 176 ~~~~~~~-------------------------------------~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t 218 (393)
T 4gq1_A 176 EGPILAG-------------------------------------YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTL 218 (393)
T ss_dssp TEEEEEE-------------------------------------EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred Cceeeee-------------------------------------cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCC
Confidence 7654332 347778899999886 789999999999999877
Q ss_pred CCCCcc--------------------cceeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCC
Q 011711 301 NTQNPF--------------------QLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD 357 (479)
Q Consensus 301 ~~~~~~--------------------~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~ 357 (479)
+..... .......+|...+.++.|. +..+++++.|+++++||+.+++....+..|..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~ 298 (393)
T 4gq1_A 219 NLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTM 298 (393)
T ss_dssp CC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------
T ss_pred CcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecC
Confidence 643110 0011234567777777774 67888888888888888887777666665554
Q ss_pred CcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceee
Q 011711 358 APMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERG 437 (479)
Q Consensus 358 ~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 437 (479)
.+..+.+..+ .............. + +.+.+..++++|+.|+.|++||+.+++...
T Consensus 299 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~-~---~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~ 353 (393)
T 4gq1_A 299 KLGPKNLLPN---------------------VQGISLFPSLLGAC-P---HPRYMDYFATAHSQHGLIQLINTYEKDSNS 353 (393)
T ss_dssp -----CCSCS---------------------EEEECSSCCSSCCE-E---CSSCTTEEEEEETTTTEEEEEETTCTTCCE
T ss_pred ccccEEEccc---------------------cccccccCcceeEE-E---ccCCCCEEEEEECCCCEEEEEECCCCcEEE
Confidence 4433322211 11111111111111 1 124445578888999999999999988766
Q ss_pred eee-ccCceEEEEECCCc-eEEEEcCCCcEEEEEec
Q 011711 438 RIF-SRREVRVIETGPDG-LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 438 ~~~-~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~ 471 (479)
... +..+|.+++|+||| +|++++.|| +.+|++.
T Consensus 354 ~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 354 IPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 554 57899999999999 888888666 6677664
No 112
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=2.8e-26 Score=223.10 Aligned_cols=298 Identities=12% Similarity=0.099 Sum_probs=231.0
Q ss_pred eeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEE-EEEeCCCcEEEEECCCCceEEEEecCCceeEEEe
Q 011711 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKL-YSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241 (479)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l-~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 241 (479)
.+++++.|+.|++||+.++ +.+..+.+|.. +.+++|+|++++| ++++.|++|++||+.+++.+..+..+..+.++..
T Consensus 4 l~vs~~~d~~v~v~d~~~~-~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~ 81 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSN-KVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV 81 (391)
T ss_dssp EEEEETTTTEEEEEETTTT-EEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred EEEEcCCCCEEEEEECCCC-eEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEE
Confidence 4678899999999999988 78888887754 8999999999987 6777999999999999999999988877776664
Q ss_pred --CCCEEE-EE-cCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EE-EEEeCCCcEEEEEccCCCCCcccceeeecC
Q 011711 242 --EGPWVF-VG-MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--ML-FAGAQDGNILVWKGIPNTQNPFQLAALLKG 314 (479)
Q Consensus 242 --~~~~l~-~~-~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 314 (479)
+++.++ ++ .++.|++||+.+++......+...+.+++|+++ .+ ++++.++.|++||+.++. ....+..
T Consensus 82 spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-----~~~~~~~ 156 (391)
T 1l0q_A 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-----VINTVSV 156 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-----EEEEEEC
T ss_pred CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc-----EEEEEec
Confidence 677665 44 468999999999988766556678999999987 45 788889999999998754 3444554
Q ss_pred CCCCeEEEEEc--CCEE-EEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEe---CCCeEEEEEcCCC
Q 011711 315 HTRPVTCLAVG--GKRL-YSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCS---LDNTIKVWIMTEE 386 (479)
Q Consensus 315 h~~~i~~l~~~--~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s---~dg~i~iwd~~~~ 386 (479)
+ ..+.+++|+ ++.+ ++++.|+.|++||+++++.+..+.. ...+.++.++ +++|++++ .++.|++||+.++
T Consensus 157 ~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 157 G-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp C-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred C-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 4 456889996 6666 6778899999999999998888764 4567788877 67888887 6899999999988
Q ss_pred cceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceE----EEEECCC---------
Q 011711 387 GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVR----VIETGPD--------- 453 (479)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~----~l~~s~~--------- 453 (479)
+.+..+..+.. . ..+.++|+++.++++++.|+.|++||+.+++....+....... .+.+.|+
T Consensus 235 ~~~~~~~~~~~-~----~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~f 309 (391)
T 1l0q_A 235 KITARIPVGPD-P----AGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADF 309 (391)
T ss_dssp EEEEEEECCSS-E----EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCE
T ss_pred eEEEEEecCCC-c----cEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccccccc
Confidence 77666655432 2 2334579998676888899999999999998877765322111 1222221
Q ss_pred -------------c-eEEEEcCCCcEEEEEeccCC
Q 011711 454 -------------G-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 454 -------------g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
. .|...+.|..+++|++.++.
T Consensus 310 s~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~ 344 (391)
T 1l0q_A 310 KSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGS 344 (391)
T ss_dssp EESCCSSEEETTCCEEEEECCBSCSEEEEECSSSC
T ss_pred ccccccccccccceEEEEeCCCCceEEEEECCCCc
Confidence 1 35566778999999997654
No 113
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=2.6e-28 Score=238.66 Aligned_cols=280 Identities=17% Similarity=0.187 Sum_probs=211.0
Q ss_pred CCCCCCCCcee-ccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEE--Eec-cCCeeEeCCC
Q 011711 94 PSYNCPKNNVR-VSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVC--YHW-LSGNCVKGDE 169 (479)
Q Consensus 94 ~~~~~s~~g~~-las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c--~~~-~~~~~~~g~~ 169 (479)
..++++|+... +++++.||.++||+......... ....+.+|.....| +.+ ....+++|+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~ 102 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIASGSE 102 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEEEET
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEEEeC
Confidence 45677888765 55688899999998755432111 11122233334444 444 5668999999
Q ss_pred CCeEEEeecCCCc------eeeEEEecccccEEEEEeCCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeC
Q 011711 170 CRFWHSWFCGEGF------TMLAKLEGHKKAVSGIALPLRS-DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICE 242 (479)
Q Consensus 170 d~~i~vw~~~~~~------~~~~~~~~H~~~V~~l~~s~~~-~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 242 (479)
|+.|++|++.++. +.+..+.+|...|.+++|+|++ ++|++++.|++|++||+.+++.+..+.
T Consensus 103 dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------- 171 (402)
T 2aq5_A 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG----------- 171 (402)
T ss_dssp TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC-----------
T ss_pred CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe-----------
Confidence 9999999998763 4678899999999999999998 699999999999999999887665441
Q ss_pred CCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeee-cCCCCC-
Q 011711 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALL-KGHTRP- 318 (479)
Q Consensus 243 ~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-~~h~~~- 318 (479)
...|...|.+++|+++ .|++++.||.|++||++++. ....+ ..|...
T Consensus 172 ------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~ 222 (402)
T 2aq5_A 172 ------------------------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT-----VVAEKDRPHEGTR 222 (402)
T ss_dssp ------------------------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-----EEEEEECSSCSSS
T ss_pred ------------------------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc-----eeeeeccCCCCCc
Confidence 1357888999999877 89999999999999998754 35555 678776
Q ss_pred eEEEEEc--CCEEEEE---eCCCeEEEEECCCCcE-EEEEe-CCCCCcEEEEEc--CCEEE-EEeCCCeEEEEEcCCCcc
Q 011711 319 VTCLAVG--GKRLYSG---SMDNTIRVWDLDTLEA-VMTLN-GHTDAPMSLLCW--DQYLL-SCSLDNTIKVWIMTEEGN 388 (479)
Q Consensus 319 i~~l~~~--~~~l~sg---s~dg~I~iwd~~~~~~-~~~~~-~h~~~v~~~~~~--~~~l~-s~s~dg~i~iwd~~~~~~ 388 (479)
+.++.|+ +.++++| +.|+.|++||+++++. +.... .|...+.++.++ +++|+ +++.||.|++||+.+.+.
T Consensus 223 ~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 223 PVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp CCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred ceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 8899996 7788888 7999999999998664 33333 567778888887 66776 555799999999998874
Q ss_pred -eEEeccc--cCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCce
Q 011711 389 -LEVAYTH--NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFME 435 (479)
Q Consensus 389 -~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 435 (479)
+..+..+ ...+..+.+ +|++. ++++ .++.+++|++.++..
T Consensus 303 ~~~~l~~~~~~~~v~~~~~----sp~~~-~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 303 FLHYLSMFSSKESQRGMGY----MPKRG-LEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp CEEEEEEECCSSCCSEEEE----CCGGG-SCGG--GTEEEEEEEEETTEE
T ss_pred ceEeecccccCCcccceEE----ecccc-ccee--cceeEEEEEcCCCcE
Confidence 4444444 355555555 58887 4443 577999999987654
No 114
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=2.9e-27 Score=233.37 Aligned_cols=268 Identities=13% Similarity=0.083 Sum_probs=209.5
Q ss_pred eEEEeccCCeeEeCCCCCeEEEeecCCCceeeE-----EEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEE
Q 011711 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLA-----KLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSAS 228 (479)
Q Consensus 154 ~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~-----~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~ 228 (479)
.+++.+....+++++.++.|++||+.++ +.+. .+.+|.+.|.+++|+++++++++++.|+.|++||+.+++.+.
T Consensus 127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~ 205 (433)
T 3bws_A 127 SVRFIDNTRLAIPLLEDEGMDVLDINSG-QTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA 205 (433)
T ss_dssp CCEESSSSEEEEEBTTSSSEEEEETTTC-CEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE
T ss_pred EEEEeCCCeEEEEeCCCCeEEEEECCCC-eEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE
Confidence 5566664456778888999999999988 5555 456899999999999999999999999999999999887765
Q ss_pred EEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EE-EEEeCCCcEEEEEccCCCCCc
Q 011711 229 VINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--ML-FAGAQDGNILVWKGIPNTQNP 305 (479)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l-~~g~~dg~i~iwd~~~~~~~~ 305 (479)
.+. .+...+.+++++++ .+ ++++.|+.|++||+.++.
T Consensus 206 ~~~-------------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~--- 245 (433)
T 3bws_A 206 TVD-------------------------------------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL--- 245 (433)
T ss_dssp EEE-------------------------------------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE---
T ss_pred EEc-------------------------------------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc---
Confidence 543 46677889999877 55 555589999999998753
Q ss_pred ccceeeecCCCCCeEEEEEc--CCEEEEEe--------CCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CC-EEEEE
Q 011711 306 FQLAALLKGHTRPVTCLAVG--GKRLYSGS--------MDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQ-YLLSC 372 (479)
Q Consensus 306 ~~~~~~~~~h~~~i~~l~~~--~~~l~sgs--------~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~-~l~s~ 372 (479)
....+.. ...+.+++++ ++.+++++ .|+.|++||+++++.+..+. |...+..+.++ ++ .++++
T Consensus 246 --~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~ 321 (433)
T 3bws_A 246 --EIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSD 321 (433)
T ss_dssp --EEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEE
T ss_pred --EEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEe
Confidence 2444444 3458899996 77888887 58999999999998877663 44567788887 54 45677
Q ss_pred eCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeC---------------CCeEEEeecCCCceee
Q 011711 373 SLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCN---------------DDSVHLYELPSFMERG 437 (479)
Q Consensus 373 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---------------dg~v~iwd~~~~~~~~ 437 (479)
+.|+.|++||+.+.+....+. +...... +.++|+++ .+++++. ||.|++||+.+++.+.
T Consensus 322 ~~~~~v~v~d~~~~~~~~~~~-~~~~~~~----~~~s~dg~-~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~ 395 (433)
T 3bws_A 322 MCCSKIEVYDLKEKKVQKSIP-VFDKPNT----IALSPDGK-YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE 395 (433)
T ss_dssp TTTTEEEEEETTTTEEEEEEE-CSSSEEE----EEECTTSS-EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE
T ss_pred cCCCEEEEEECCCCcEEEEec-CCCCCCe----EEEcCCCC-EEEEEecCCCccccccccccccceEEEEEECCCCcEEE
Confidence 899999999999876655543 3333333 34469998 4555544 5799999999999988
Q ss_pred eeeccCceEEEEECCCc-eEEEEc-CCCcEEEEEecc
Q 011711 438 RIFSRREVRVIETGPDG-LFFTGD-GTGMLSVWKILA 472 (479)
Q Consensus 438 ~~~~~~~v~~l~~s~~g-~l~sg~-~dg~v~vw~~~~ 472 (479)
.+.....+.+++|+|+| .|++++ .|+.|++|+++.
T Consensus 396 ~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 396 FWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 88888889999999999 776665 599999999863
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9e-29 Score=260.88 Aligned_cols=247 Identities=21% Similarity=0.265 Sum_probs=197.7
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCee
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 164 (479)
.+.||...|++++|+|+|.++++|+.||+|+||+..++
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~------------------------------------------ 41 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE------------------------------------------ 41 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT------------------------------------------
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC------------------------------------------
Confidence 46789999999999999999999998888888853210
Q ss_pred EeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCC--CCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeC
Q 011711 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLR--SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICE 242 (479)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~--~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 242 (479)
+ .+.+..+.+|.+.|++++|+++ +++|++|+.||+|++||+.+++....
T Consensus 42 ---------------~-~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~------------- 92 (753)
T 3jro_A 42 ---------------T-HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQI------------- 92 (753)
T ss_dssp ---------------E-EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEE-------------
T ss_pred ---------------C-CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccc-------------
Confidence 1 1456778899999999999988 99999999999999999988752221
Q ss_pred CCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC----EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCC
Q 011711 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (479)
Q Consensus 243 ~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~ 318 (479)
.....|...|.+++|+++ .+++|+.||.|++||+..... .....+.+|...
T Consensus 93 ----------------------~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~---~~~~~~~~~~~~ 147 (753)
T 3jro_A 93 ----------------------AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---TSPIIIDAHAIG 147 (753)
T ss_dssp ----------------------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC---CCCEEEECCSSC
T ss_pred ----------------------ccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC---cceeEeecCCCc
Confidence 233468889999999864 899999999999999987643 234556789999
Q ss_pred eEEEEEc---------------CCEEEEEeCCCeEEEEECCCC----cEEEEEeCCCCCcEEEEEc-----CCEEEEEeC
Q 011711 319 VTCLAVG---------------GKRLYSGSMDNTIRVWDLDTL----EAVMTLNGHTDAPMSLLCW-----DQYLLSCSL 374 (479)
Q Consensus 319 i~~l~~~---------------~~~l~sgs~dg~I~iwd~~~~----~~~~~~~~h~~~v~~~~~~-----~~~l~s~s~ 374 (479)
|.+++|+ +.++++|+.||.|++||++++ .....+.+|...|.++.++ ++++++++.
T Consensus 148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~ 227 (753)
T 3jro_A 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 227 (753)
T ss_dssp EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence 9999995 468999999999999999887 5677888999999999998 468999999
Q ss_pred CCeEEEEEcCCCcc-----eEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC
Q 011711 375 DNTIKVWIMTEEGN-----LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (479)
Q Consensus 375 dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 432 (479)
||.|++||+.+... ......+...+..+.+ +|+++ ++++++.||.|++|++..
T Consensus 228 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~----spdg~-~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 228 DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW----SLSGN-VLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEE----CTTTC-CEEEECSSSCEECCBCCS
T ss_pred CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEE----cCCCC-EEEEEcCCCEEEEEecCC
Confidence 99999999987642 2222234444545555 69988 788899999999999984
No 116
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=1.1e-28 Score=243.88 Aligned_cols=248 Identities=15% Similarity=0.201 Sum_probs=186.7
Q ss_pred eeeEEEecccccEEEEEeCC-CCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCC
Q 011711 183 TMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIES 261 (479)
Q Consensus 183 ~~~~~~~~H~~~V~~l~~s~-~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~ 261 (479)
.......+|...|++|+|+| ++++||+|+.||+|+|||+.+++....+
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~------------------------------- 158 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI------------------------------- 158 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-------------------------------
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-------------------------------
Confidence 34556778999999999998 5679999999999999999877644332
Q ss_pred CceEEecCCCccEEEEEEcC-C--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCC
Q 011711 262 SAEFSLDGPVGEVYSMVVAN-E--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDN 336 (479)
Q Consensus 262 ~~~~~~~~~~~~v~~~~~~~-~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg 336 (479)
...+|.+.|.+++|+| + +|++|+.||+|++||+..+. .........+...+.+++++ +.+|++|+.||
T Consensus 159 ----~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg 231 (435)
T 4e54_B 159 ----KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI---LRVFASSDTINIWFCSLDVSASSRMVVTGDNVG 231 (435)
T ss_dssp ----CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE---EEEEECCSSCSCCCCCEEEETTTTEEEEECSSS
T ss_pred ----EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc---eeEEeccCCCCccEEEEEECCCCCEEEEEeCCC
Confidence 3457899999999986 2 99999999999999997653 12222233445567888886 88999999999
Q ss_pred eEEEEECCCCcEEEEEeCCCCCcEEEEEc--C-CEEEEEeCCCeEEEEEcCCCcceEEe---ccccCccceEEEeeeeCC
Q 011711 337 TIRVWDLDTLEAVMTLNGHTDAPMSLLCW--D-QYLLSCSLDNTIKVWIMTEEGNLEVA---YTHNEDHGVLALGGLNDP 410 (479)
Q Consensus 337 ~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~-~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 410 (479)
.|++||++. +.+.++.+|...|.++.++ + .++++++.|+.|++||+++......+ ..|...+ .++.++|
T Consensus 232 ~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v----~~~~~sp 306 (435)
T 4e54_B 232 NVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV----NAACFSP 306 (435)
T ss_dssp BEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCE----EECCBCT
T ss_pred cEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccc----cceeECC
Confidence 999999864 5677889999999999997 3 48889999999999999876544333 2344433 3445579
Q ss_pred CCCcEEEEEeCCCeEEEeecCCCceeeeeec-------cCceEEEEECCCc-eEEEE------------cCCCcEEEEEe
Q 011711 411 DGNPVLICSCNDDSVHLYELPSFMERGRIFS-------RREVRVIETGPDG-LFFTG------------DGTGMLSVWKI 470 (479)
Q Consensus 411 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-------~~~v~~l~~s~~g-~l~sg------------~~dg~v~vw~~ 470 (479)
+|+ +|++++.|+.|++||+.+++....+.. ...+....|+|++ .++++ ..++.|++||.
T Consensus 307 dg~-~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~ 385 (435)
T 4e54_B 307 DGA-RLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDG 385 (435)
T ss_dssp TSS-EEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECS
T ss_pred CCC-eeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEEC
Confidence 998 889999999999999998876655432 1123334555555 44333 34568999998
Q ss_pred ccCC
Q 011711 471 LAKP 474 (479)
Q Consensus 471 ~~~~ 474 (479)
.+++
T Consensus 386 ~~g~ 389 (435)
T 4e54_B 386 NSGK 389 (435)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 7654
No 117
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.1e-28 Score=230.33 Aligned_cols=264 Identities=12% Similarity=0.094 Sum_probs=190.1
Q ss_pred CCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEeCCCCCeE
Q 011711 94 PSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECRFW 173 (479)
Q Consensus 94 ~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~d~~i 173 (479)
....+.+++.++++|+.||+|++||..+.... ..+.......+++++. +++++.|++|
T Consensus 40 ~~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~-------------------~~~~~~~v~~~~~~~~---~~s~s~D~~i 97 (343)
T 3lrv_A 40 LNKSMYYDKWVCMCRCEDGALHFTQLKDSKTI-------------------TTITTPNPRTGGEHPA---IISRGPCNRL 97 (343)
T ss_dssp ECSSSSEEEEEEEEEEETTEEEEEEESSSSCE-------------------EEEEEECCCTTCCCCS---EEEECSTTEE
T ss_pred hhhhhcCCCCEEEEECCCCcEEEEECCCCcEE-------------------EEEecCCceeeeeCCc---eEEecCCCeE
Confidence 45566789999999999999999987654320 0111111223333333 9999999999
Q ss_pred EEeecC---------CCceeeEEEe-cccccEEEEEeCC--CCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEe
Q 011711 174 HSWFCG---------EGFTMLAKLE-GHKKAVSGIALPL--RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241 (479)
Q Consensus 174 ~vw~~~---------~~~~~~~~~~-~H~~~V~~l~~s~--~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 241 (479)
++|+.. ++ +.+..+. +|.+.|.+++|+| ++++|++++.||+|++||+.+++......
T Consensus 98 ~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---------- 166 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTN-KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS---------- 166 (343)
T ss_dssp EEEETTTEEEEEETTTC-CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC----------
T ss_pred EEEEccCceEEeecCCc-ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe----------
Confidence 999775 33 3344443 6779999999999 99999999999999999999888754332
Q ss_pred CCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecC-CCCC
Q 011711 242 EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKG-HTRP 318 (479)
Q Consensus 242 ~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-h~~~ 318 (479)
..+...+.+++|+++ +|++|+.||.|++||++++.. ....+.. |..+
T Consensus 167 --------------------------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~----~~~~~~~~h~~~ 216 (343)
T 3lrv_A 167 --------------------------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ----ASSRFPVDEEAK 216 (343)
T ss_dssp --------------------------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTS----CCEECCCCTTSC
T ss_pred --------------------------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCC----CccEEeccCCCC
Confidence 124456889999988 899999999999999988753 2255666 9999
Q ss_pred eEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeC---CCCCcE--EEEEc--CCEEEEEeC-CCeEEEEEcCCCcc
Q 011711 319 VTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNG---HTDAPM--SLLCW--DQYLLSCSL-DNTIKVWIMTEEGN 388 (479)
Q Consensus 319 i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~v~--~~~~~--~~~l~s~s~-dg~i~iwd~~~~~~ 388 (479)
|++++|+ +.+|++++ |+.|++||+++++.+..+.. |...+. ++.++ +++|++++. |+.|++|++.....
T Consensus 217 v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 217 IKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp EEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred EEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence 9999996 88999999 55999999999887655543 333333 46666 789999998 99999999976654
Q ss_pred eEEeccccCccceEEEeeeeCC---CCCcEEEEEeCCCeEEEeec
Q 011711 389 LEVAYTHNEDHGVLALGGLNDP---DGNPVLICSCNDDSVHLYEL 430 (479)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~s~~~dg~v~iwd~ 430 (479)
.... .+ .....+.+ +.. .+++++.|+.+.++-.
T Consensus 296 ~~~~----~~----~~~~~~~~~~~~~~-~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 296 NWTK----DE----ESALCLQSDTADFT-DMDVVCGDGGIAAILK 331 (343)
T ss_dssp SEEE----EE----EEECCC----CCCC-EEEEEEETTEEEEEEE
T ss_pred ceEe----cC----ceeEecCccccccc-eeEEEecCCceEEEEe
Confidence 3322 11 12223334 555 6777788888888754
No 118
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=2e-26 Score=227.33 Aligned_cols=245 Identities=18% Similarity=0.259 Sum_probs=195.0
Q ss_pred CeEEEecc-CCeeEeCCCCCeEEEeecCCC---------ceeeEEEecccccEEEEEeCCCCC-EEEEEeCCCcEEEEEC
Q 011711 153 KNVCYHWL-SGNCVKGDECRFWHSWFCGEG---------FTMLAKLEGHKKAVSGIALPLRSD-KLYSGSRDGTVQLWDC 221 (479)
Q Consensus 153 ~~~c~~~~-~~~~~~g~~d~~i~vw~~~~~---------~~~~~~~~~H~~~V~~l~~s~~~~-~l~s~s~Dg~v~vwd~ 221 (479)
..+++.+. ...+++++.++.|++|++.+. ...+..+.+|...|.+++|+|++. +|++|+.||+|++||+
T Consensus 132 ~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 211 (430)
T 2xyi_A 132 NRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI 211 (430)
T ss_dssp SEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEET
T ss_pred EEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeC
Confidence 34455554 457889999999999999862 477888999999999999999998 9999999999999999
Q ss_pred CCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEc
Q 011711 222 HTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKG 298 (479)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~ 298 (479)
.++....... ........|...|.+++|+++ .|++++.||.|++||+
T Consensus 212 ~~~~~~~~~~------------------------------~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~ 261 (430)
T 2xyi_A 212 NATPKEHRVI------------------------------DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDT 261 (430)
T ss_dssp TSCCBGGGEE------------------------------ECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred CCCCCCCcee------------------------------ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEEC
Confidence 8743210000 001234578889999999873 8999999999999999
Q ss_pred cCCCCCcccceeeecCCCCCeEEEEEc--CC-EEEEEeCCCeEEEEECCC-CcEEEEEeCCCCCcEEEEEc--C-CEEEE
Q 011711 299 IPNTQNPFQLAALLKGHTRPVTCLAVG--GK-RLYSGSMDNTIRVWDLDT-LEAVMTLNGHTDAPMSLLCW--D-QYLLS 371 (479)
Q Consensus 299 ~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~-~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~~~v~~~~~~--~-~~l~s 371 (479)
++... ......+..|...|++++|+ +. ++++|+.||.|++||+++ .+++..+..|...|.++.++ + .+|++
T Consensus 262 ~~~~~--~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s 339 (430)
T 2xyi_A 262 RNNNT--SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339 (430)
T ss_dssp TCSCS--SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred CCCCC--CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE
Confidence 87632 23456677999999999997 44 799999999999999998 56788999999999999998 3 47999
Q ss_pred EeCCCeEEEEEcCCC--------------cceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCC
Q 011711 372 CSLDNTIKVWIMTEE--------------GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSF 433 (479)
Q Consensus 372 ~s~dg~i~iwd~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 433 (479)
++.|+.|++||+... ..+.....|...+..+. ++|+++.++++++.||.|++|++...
T Consensus 340 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~----~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS----WNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEE----ECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEE----ECCCCCCEEEEEECCCCEEEeEcccc
Confidence 999999999999872 33334444555444444 46988878999999999999998753
No 119
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.3e-27 Score=233.04 Aligned_cols=254 Identities=10% Similarity=0.105 Sum_probs=197.0
Q ss_pred cccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEE--EeCCCEEEEEcCCeEEEEEcCCCceEEe
Q 011711 190 GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSL--ICEGPWVFVGMPNVVKAWHIESSAEFSL 267 (479)
Q Consensus 190 ~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~i~v~~~~~~~~~~~ 267 (479)
.-...|.+++|+|||+++||++.|++|+ |...++.+. .+...+..+ .++| .++.+.+|+.+.......
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~--gh~~~v~~V~FsPdg------~~~~~~~~~~~~~~~~~~ 82 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDIN--CNSKNLFHVKEFPLE------FENKLDFELAQQNGLLNS 82 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCS--SBGGGTEEEEEECCC------CCCTTTTSCCCSSCSSTT
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccceec--CCCccEEEEEECCCC------CcceEEEEeCCCceEeec
Confidence 4468899999999999999999999999 877666551 223333333 3344 344444444433333333
Q ss_pred cCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCC-----CeEEEEEc--CCEEEEEeCCCeE
Q 011711 268 DGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR-----PVTCLAVG--GKRLYSGSMDNTI 338 (479)
Q Consensus 268 ~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~-----~i~~l~~~--~~~l~sgs~dg~I 338 (479)
.+...|.+++|+|+ .|++++.||.|++||... ....+. |.. .|.+++|+ |++|++|+.||+|
T Consensus 83 -~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtV 153 (588)
T 2j04_A 83 -QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGEL 153 (588)
T ss_dssp -SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred -CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence 45889999999999 899999999999999543 345555 665 59999997 9999999999999
Q ss_pred EEEECCCCc-------EEEEE----eCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcce---EEe-ccccCccceEE
Q 011711 339 RVWDLDTLE-------AVMTL----NGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNL---EVA-YTHNEDHGVLA 403 (479)
Q Consensus 339 ~iwd~~~~~-------~~~~~----~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~-~~~~~~~~~~~ 403 (479)
++||+.+++ .+.++ .+|...|.+++|+++-+++++.|+.|++||+...... ..+ ..|...+..++
T Consensus 154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 999999886 36777 6777899999999444999999999999999887642 334 35566666666
Q ss_pred EeeeeCCCCCcEEEEEeCCCeEEEeecCCCce-eeeeeccCceEEEEE--CCCc-eEEEEcCCCcEEEEEec
Q 011711 404 LGGLNDPDGNPVLICSCNDDSVHLYELPSFME-RGRIFSRREVRVIET--GPDG-LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 404 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~l~~--s~~g-~l~sg~~dg~v~vw~~~ 471 (479)
+. |+ .+++++ ++.|++||+.+++. .....|...+..++| +|++ .++++++||+ ++|...
T Consensus 234 Fs------g~-~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 234 IV------DY-KVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EE------TT-EEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EE------CC-EEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 63 44 788776 79999999998888 444467889999999 9999 9999999999 999974
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3e-26 Score=227.45 Aligned_cols=296 Identities=11% Similarity=0.055 Sum_probs=206.9
Q ss_pred CCCCCCCCCCCCceeccCCCCCCccccccccCCC---CC--CCCCCc--------------cccccCcCC----------
Q 011711 90 KKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPD---RT--VPNKSS--------------LDCSTGSDD---------- 140 (479)
Q Consensus 90 ~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~---~~--~~~~~~--------------~~~~~~~~~---------- 140 (479)
..++..++|+++|+++++++ ++.|++|+..+.. .. .+.... .........
T Consensus 4 ~~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 45678899999999888776 8999999987665 10 000000 000000000
Q ss_pred ---------CCCeeeeeecCCC--eEEEeccCCee-EeCCCCCeEEEeecC--CCceeeEEEe--cccccEEEEEeCCCC
Q 011711 141 ---------SGSKRTLERTTPK--NVCYHWLSGNC-VKGDECRFWHSWFCG--EGFTMLAKLE--GHKKAVSGIALPLRS 204 (479)
Q Consensus 141 ---------~~~~~~~~~~~~~--~~c~~~~~~~~-~~g~~d~~i~vw~~~--~~~~~~~~~~--~H~~~V~~l~~s~~~ 204 (479)
.........+... .+++.+....+ ++|+.|+.|++|++. ++ +.+..+. .|...|++++|+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK-NVLKLRKRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS-SCEEEEEEEECSSCEEEEEECTTS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC-ceeeeeecccCCCCceEEEEcCCC
Confidence 0000001112223 34455566675 899999999999998 66 6677776 567899999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--
Q 011711 205 DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-- 282 (479)
Q Consensus 205 ~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-- 282 (479)
++|++++.||.|++|++.+++.... ....+.+|...|.+++|+++
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~---------------------------------~~~~~~~h~~~v~~~~~sp~~~ 208 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKF---------------------------------TQEPILGHVSMLTDVHLIKDSD 208 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSC---------------------------------CCCCSEECSSCEEEEEEEECTT
T ss_pred CEEEEEeCCCcEEEEecCCcccccc---------------------------------cceeeecccCceEEEEEcCCCC
Confidence 9999999999999999987654320 00123457889999999886
Q ss_pred ---EEEEEeCCCcEEEEEccCCCCCcccceee-ecCCCCCeEEEEEc-CCEEEEEeCCCeEEEEECCCCcEEEEEeCC--
Q 011711 283 ---MLFAGAQDGNILVWKGIPNTQNPFQLAAL-LKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGH-- 355 (479)
Q Consensus 283 ---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-~~~h~~~i~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h-- 355 (479)
+|++|+.|+.|++||+.++.. ... +.+|...|.+++|+ +++|++++.|+.|++||+++++++..+..+
T Consensus 209 ~~~~l~s~~~d~~i~vwd~~~~~~-----~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~ 283 (450)
T 2vdu_B 209 GHQFIITSDRDEHIKISHYPQCFI-----VDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSL 283 (450)
T ss_dssp SCEEEEEEETTSCEEEEEESCTTC-----EEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHH
T ss_pred CCcEEEEEcCCCcEEEEECCCCce-----eeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhh
Confidence 899999999999999987643 333 66899999999996 899999999999999999999999888632
Q ss_pred -----------------------CCCcEEEEEc--CCEEEEEe-CCCeEEEEEc--CCC---cceEEeccccCccceEEE
Q 011711 356 -----------------------TDAPMSLLCW--DQYLLSCS-LDNTIKVWIM--TEE---GNLEVAYTHNEDHGVLAL 404 (479)
Q Consensus 356 -----------------------~~~v~~~~~~--~~~l~s~s-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~~~~~ 404 (479)
...+..+.+. +++|++++ .|+.|++|++ ... ..+..+..+ ..+..+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~-- 360 (450)
T 2vdu_B 284 IKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISL-- 360 (450)
T ss_dssp HGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEE--
T ss_pred hhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEE--
Confidence 3457778777 78999988 8999999999 554 333334333 333333
Q ss_pred eeeeCCCCCcEEEEE-eC------CCeEEEeecCC
Q 011711 405 GGLNDPDGNPVLICS-CN------DDSVHLYELPS 432 (479)
Q Consensus 405 ~~~~~~~~~~~l~s~-~~------dg~v~iwd~~~ 432 (479)
.++|+ . ++++. +. +..|.+|.++.
T Consensus 361 --~~~~~-~-~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 361 --SAHND-E-FQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp --EEETT-E-EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred --EecCC-c-EEEEEecccCCCCCCcceEEEEEEc
Confidence 34574 3 44444 32 45578887653
No 121
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=3.2e-24 Score=216.89 Aligned_cols=307 Identities=12% Similarity=0.072 Sum_probs=233.3
Q ss_pred EeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEEC--CCCceEEEEecCC
Q 011711 157 YHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDC--HTGQSASVINLGA 234 (479)
Q Consensus 157 ~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~--~~~~~~~~~~~~~ 234 (479)
+.+....+++++.|++|.+||..++ +++.++..+.. +..++|+||+++|++++.|++|++||+ .+++.+..+..+.
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~-~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~ 222 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSK-KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI 222 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTC-CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCc-eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCC
Confidence 4445557888999999999999988 78888884433 899999999999999999999999999 8899998888776
Q ss_pred ceeEEE--e----CCCEEEEE--cCCeEEEEEcCCCceEEec-C-----------CCccEEEEEEcCC---EEEEEeCCC
Q 011711 235 EVGSLI--C----EGPWVFVG--MPNVVKAWHIESSAEFSLD-G-----------PVGEVYSMVVANE---MLFAGAQDG 291 (479)
Q Consensus 235 ~~~~~~--~----~~~~l~~~--~~~~i~v~~~~~~~~~~~~-~-----------~~~~v~~~~~~~~---~l~~g~~dg 291 (479)
....+. + ++++++++ .++.|.+||..+.+.+... . +...+.++.++++ .+++...++
T Consensus 223 ~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g 302 (543)
T 1nir_A 223 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG 302 (543)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCC
Confidence 665544 5 78888876 4799999999988865322 1 1237889999875 777788899
Q ss_pred cEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEE-eCCCeEEEEECCCCcEEEEEeC----CCCCcEEEEE
Q 011711 292 NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSG-SMDNTIRVWDLDTLEAVMTLNG----HTDAPMSLLC 364 (479)
Q Consensus 292 ~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~----h~~~v~~~~~ 364 (479)
.|.+||+.+.... . ...+ .+...+..+.|+ +++++++ ..+++|.+||+.+++++..+.. |......+..
T Consensus 303 ~i~vvd~~~~~~l--~-~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~ 378 (543)
T 1nir_A 303 KVLLVNYKDIDNL--T-VTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVH 378 (543)
T ss_dssp EEEEEECTTSSSC--E-EEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEE
T ss_pred eEEEEEecCCCcc--e-eEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCC
Confidence 9999999875431 1 1222 345667788886 7776655 4689999999999999998874 6555555432
Q ss_pred -c-CCEEEEEe-CCCeEEEEEcCC-------CcceEEeccccCccceEEEeeeeCCCCCcEEEEEe-------CCCeEEE
Q 011711 365 -W-DQYLLSCS-LDNTIKVWIMTE-------EGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC-------NDDSVHL 427 (479)
Q Consensus 365 -~-~~~l~s~s-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-------~dg~v~i 427 (479)
. +..++++. .|++|.+||+.+ .+.++.+..+......+.+ +|+++ .|++++ .+++|.+
T Consensus 379 p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~----~pdg~-~l~v~~~~~~~~~~~~~v~v 453 (543)
T 1nir_A 379 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKT----HPKSS-HLYVDTTFNPDARISQSVAV 453 (543)
T ss_dssp TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC----CTTCC-EEEECCTTCSSHHHHTCEEE
T ss_pred CCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEc----CCCCC-cEEEecCCCCCcccCceEEE
Confidence 2 45566665 589999999988 6777777776655444444 69998 666665 2679999
Q ss_pred eecCCCceeeee----------eccCceEEEEECCCc-eEEEE-----cCCCcEEEEEeccCC
Q 011711 428 YELPSFMERGRI----------FSRREVRVIETGPDG-LFFTG-----DGTGMLSVWKILAKP 474 (479)
Q Consensus 428 wd~~~~~~~~~~----------~~~~~v~~l~~s~~g-~l~sg-----~~dg~v~vw~~~~~~ 474 (479)
||+.+++..... .+...+..++|+|+| .++++ +.|+.|.|||..+.+
T Consensus 454 ~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 454 FDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 516 (543)
T ss_dssp EETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred EECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence 999998877333 225779999999999 55433 358999999988764
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=4.6e-24 Score=207.43 Aligned_cols=258 Identities=15% Similarity=0.150 Sum_probs=202.7
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEe--CCCEEE-EE-cCCeEEEEEcCCCceEEecCCCccEEEEEEc
Q 011711 205 DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC--EGPWVF-VG-MPNVVKAWHIESSAEFSLDGPVGEVYSMVVA 280 (479)
Q Consensus 205 ~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~l~-~~-~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~ 280 (479)
..+++++.|+.|++||+.+++.+..+..+..+.++.. +++.++ ++ .++.|++||+.+++......+...+.+++|+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~s 82 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVS 82 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEEC
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEEC
Confidence 4688899999999999999999999988877776664 777664 44 7899999999998877655555599999999
Q ss_pred CC--EE-EEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEE-EEEeCCCeEEEEECCCCcEEEEEeC
Q 011711 281 NE--ML-FAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRL-YSGSMDNTIRVWDLDTLEAVMTLNG 354 (479)
Q Consensus 281 ~~--~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~ 354 (479)
++ .| +++..++.|++||+.++.. ...+.. ...+.+++|+ ++.+ ++++.|+.|++||+.+++.+..+..
T Consensus 83 pdg~~l~~~~~~~~~v~v~d~~~~~~-----~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 156 (391)
T 1l0q_A 83 PDGKQVYVTNMASSTLSVIDTTSNTV-----AGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV 156 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEE-----EEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEEECCCCEEEEEECCCCeE-----EEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec
Confidence 87 55 4555779999999987642 344443 4568999996 6666 7888899999999999999998887
Q ss_pred CCCCcEEEEEc--CCEE-EEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEe--CCCeEEEee
Q 011711 355 HTDAPMSLLCW--DQYL-LSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC--NDDSVHLYE 429 (479)
Q Consensus 355 h~~~v~~~~~~--~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~v~iwd 429 (479)
+. .+..+.++ ++++ ++++.|+.|++||+++.+....+.. .... ..+.++|+++.+++++. .++.|++||
T Consensus 157 ~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~----~~~~~~~~g~~l~~~~~~~~~~~v~~~d 230 (391)
T 1l0q_A 157 GR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAP----SGIAVNPEGTKAYVTNVDKYFNTVSMID 230 (391)
T ss_dssp CS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEE----EEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred CC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCc----cceEECCCCCEEEEEecCcCCCcEEEEE
Confidence 64 45777776 5666 6778899999999998766555443 2222 33345799984444444 789999999
Q ss_pred cCCCceeeeeeccCceEEEEECCCc-eE-EEEcCCCcEEEEEeccCC
Q 011711 430 LPSFMERGRIFSRREVRVIETGPDG-LF-FTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 430 ~~~~~~~~~~~~~~~v~~l~~s~~g-~l-~sg~~dg~v~vw~~~~~~ 474 (479)
+.+++.+..+.....+.+++|+|++ .| ++++.|+.|++||+.+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 231 TGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp TTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred CCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 9999988888877789999999999 55 788999999999987643
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=2.3e-25 Score=205.84 Aligned_cols=236 Identities=14% Similarity=0.070 Sum_probs=171.8
Q ss_pred eEeCCCCCeEEEeecCCC--ceeeEEEecccccEEEEEeCC-------------------------C----CCEEEEEeC
Q 011711 164 CVKGDECRFWHSWFCGEG--FTMLAKLEGHKKAVSGIALPL-------------------------R----SDKLYSGSR 212 (479)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~--~~~~~~~~~H~~~V~~l~~s~-------------------------~----~~~l~s~s~ 212 (479)
|+.......|++|+..++ .+.++++.+|+.+|..+.+.| | ++.+++++.
T Consensus 56 ~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~ 135 (356)
T 2w18_A 56 CIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGN 135 (356)
T ss_dssp EEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEE
T ss_pred EEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCC
Confidence 555555689999999987 378899999887666555555 4 555555543
Q ss_pred CCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEE---cCCeEEEEEcCC-Cce-EEecCCCccEEEEEEcC-----C
Q 011711 213 DGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVG---MPNVVKAWHIES-SAE-FSLDGPVGEVYSMVVAN-----E 282 (479)
Q Consensus 213 Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~i~v~~~~~-~~~-~~~~~~~~~v~~~~~~~-----~ 282 (479)
.+++|++.+ ++++.++ .++.|++|++.. ++. .....|...+..++|++ +
T Consensus 136 --~~~v~~l~~-------------------g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~ 194 (356)
T 2w18_A 136 --IKAVLGLTK-------------------RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQE 194 (356)
T ss_dssp --EEEEEEETT-------------------TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTT
T ss_pred --eEEEEecCC-------------------CcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCc
Confidence 255555443 3444454 489999999954 544 34556666666666655 4
Q ss_pred EEEEEeCCCcEEEEEccCCCCCcccceeeecCCC---CCeEEEEEc--CCEE------------EEEeCCCeEEEEECCC
Q 011711 283 MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT---RPVTCLAVG--GKRL------------YSGSMDNTIRVWDLDT 345 (479)
Q Consensus 283 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~---~~i~~l~~~--~~~l------------~sgs~dg~I~iwd~~~ 345 (479)
.|++|+.|++|++||+.+++ .+.++.+|. ..+.+++|+ +.++ ++|+.|++|++||..+
T Consensus 195 ~LaSgS~D~TIkIWDl~TGk-----~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 195 ALLGTTIMNNIVIWNLKTGQ-----LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT 269 (356)
T ss_dssp EEEEEETTSEEEEEETTTCC-----EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred eEEEecCCCcEEEEECCCCc-----EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence 99999999999999999875 356666543 367777775 5554 6788999999999999
Q ss_pred CcEEEEE-----eCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccccCccce-EEEeeeeCCCCCcEEEEE
Q 011711 346 LEAVMTL-----NGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGV-LALGGLNDPDGNPVLICS 419 (479)
Q Consensus 346 ~~~~~~~-----~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~ 419 (479)
++.+..+ .+|.....+..+.+.++++++.|++|+|||+.+++.+..+..|...+.. +++ +|+|+ +|++|
T Consensus 270 gk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vaf----SPDG~-~LaSG 344 (356)
T 2w18_A 270 TLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKW----SGTDS-HLLAG 344 (356)
T ss_dssp TEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEE----CSSSS-EEEEE
T ss_pred CEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEE----CCCCC-EEEEE
Confidence 9988776 3677666666666889999999999999999999998888777665432 444 69998 89999
Q ss_pred eCCCeEEEeec
Q 011711 420 CNDDSVHLYEL 430 (479)
Q Consensus 420 ~~dg~v~iwd~ 430 (479)
+.|++|+|||+
T Consensus 345 S~D~TIklWd~ 355 (356)
T 2w18_A 345 QKDGNIFVYHY 355 (356)
T ss_dssp CTTSCEEEEEE
T ss_pred ECCCcEEEecC
Confidence 99999999996
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=1.3e-25 Score=207.47 Aligned_cols=184 Identities=14% Similarity=0.017 Sum_probs=137.3
Q ss_pred CCCeEEEeecCCCceeeEEEecccccEEEEEeCC---CCCEEEEEeCCCcEEEEECCCCceEEEEecCCc----ee--EE
Q 011711 169 ECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL---RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE----VG--SL 239 (479)
Q Consensus 169 ~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~---~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~----~~--~~ 239 (479)
.|+.|++|++.+..+.+..+.+|...++.++|++ ++.+|++++.|++|+|||+++|+++.++..+.. +. .+
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf 234 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY 234 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence 6899999999664478889999999999999999 789999999999999999999999998863221 11 22
Q ss_pred EeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceee-----ecC
Q 011711 240 ICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAAL-----LKG 314 (479)
Q Consensus 240 ~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-----~~~ 314 (479)
.+++.+++++.... .+| .+++|+.|++|++||..++.. +.. ..+
T Consensus 235 SpdG~~lvs~s~~~-~~w-------------------------~laSGs~D~tIklWd~~tgk~-----l~v~~~~~p~G 283 (356)
T 2w18_A 235 SEMGLLFIVLSHPC-AKE-------------------------SESLRSPVFQLIVINPKTTLS-----VGVMLYCLPPG 283 (356)
T ss_dssp EETTEEEEEEC--------------------------------------CCEEEEEEETTTTEE-----EEEEEECCCTT
T ss_pred CCCCCEEEEeccCC-Ccc-------------------------eeeccCCCcEEEEEECCCCEE-----EEEEEeeccCC
Confidence 23333332221100 001 367899999999999987643 222 247
Q ss_pred CCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcE-EEEEc--CCEEEEEeCCCeEEEEEc
Q 011711 315 HTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPM-SLLCW--DQYLLSCSLDNTIKVWIM 383 (479)
Q Consensus 315 h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~-~~~~~--~~~l~s~s~dg~i~iwd~ 383 (479)
|...+.+..+++..+++++.|++|+|||+.+++++.++.+|...+. .++|+ +++|++|+.|++|+|||+
T Consensus 284 h~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 284 QAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 7777777777789999999999999999999999999999988765 46776 789999999999999986
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=3.1e-24 Score=211.62 Aligned_cols=272 Identities=14% Similarity=0.095 Sum_probs=211.8
Q ss_pred CCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCC--eEEEeccCCeeEeCCC
Q 011711 92 SPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK--NVCYHWLSGNCVKGDE 169 (479)
Q Consensus 92 ~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~c~~~~~~~~~~g~~ 169 (479)
.+.+++|+|++.++++++.||++++|+..+....... .. ..+..+... .+++.+....+++++.
T Consensus 124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-------~~-------~~~~~~~~~v~~~~~~~~~~~~~s~~~ 189 (433)
T 3bws_A 124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLS-------PP-------EKYKKKLGFVETISIPEHNELWVSQMQ 189 (433)
T ss_dssp CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEEC-------CC-------HHHHTTCCEEEEEEEGGGTEEEEEEGG
T ss_pred CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeec-------Cc-------ccccccCCceeEEEEcCCCEEEEEECC
Confidence 3468999999999999999999999987654321000 00 000111112 3444455668889999
Q ss_pred CCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEE-EEeCCCcEEEEECCCCceEEEEecCCceeEEEe--CCCEE
Q 011711 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLY-SGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC--EGPWV 246 (479)
Q Consensus 170 d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~-s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~l 246 (479)
|+.|++||+.++ +.+..+..|...+.+++|+|++++++ +++.|+.|++||+.+++.+..+.....+..+.. +++.+
T Consensus 190 d~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l 268 (433)
T 3bws_A 190 ANAVHVFDLKTL-AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKEL 268 (433)
T ss_dssp GTEEEEEETTTC-CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEE
T ss_pred CCEEEEEECCCc-eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEE
Confidence 999999999887 78888899999999999999999885 455899999999999999888887777666654 67777
Q ss_pred EEEc---------CCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecC
Q 011711 247 FVGM---------PNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKG 314 (479)
Q Consensus 247 ~~~~---------~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 314 (479)
+++. ++.|++||+.+++......+...+.+++++++ ++++++.|+.|++||+.++. ....+.
T Consensus 269 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~-----~~~~~~- 342 (433)
T 3bws_A 269 YIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK-----VQKSIP- 342 (433)
T ss_dssp EEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE-----EEEEEE-
T ss_pred EEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc-----EEEEec-
Confidence 6653 78999999999888776666778899999987 55677899999999998653 233343
Q ss_pred CCCCeEEEEEc--CCEEEEEeC---------------CCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeC-
Q 011711 315 HTRPVTCLAVG--GKRLYSGSM---------------DNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSL- 374 (479)
Q Consensus 315 h~~~i~~l~~~--~~~l~sgs~---------------dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~- 374 (479)
+...+.+++++ ++++++++. ||.|++||+.+++.+..+..+ ..+.++.++ +++|++++.
T Consensus 343 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~ 421 (433)
T 3bws_A 343 VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFL 421 (433)
T ss_dssp CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETT
T ss_pred CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECC
Confidence 67789999997 778888776 579999999999999988864 467888886 678887775
Q ss_pred CCeEEEEEcCC
Q 011711 375 DNTIKVWIMTE 385 (479)
Q Consensus 375 dg~i~iwd~~~ 385 (479)
|+.|++|+++.
T Consensus 422 d~~i~v~~~~~ 432 (433)
T 3bws_A 422 DHQIRVYRRDG 432 (433)
T ss_dssp TTEEEEEEETT
T ss_pred CCeEEEEEecC
Confidence 99999999863
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=2.1e-25 Score=217.29 Aligned_cols=264 Identities=9% Similarity=0.001 Sum_probs=165.1
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeE--EEec-----
Q 011711 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNV--CYHW----- 159 (479)
Q Consensus 87 ~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--c~~~----- 159 (479)
..|........+++++.++|+++.|+++|||+.......... ....+.+|..... ++.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~--------------~~~~~~gH~~~v~~v~~~p~~~~~ 151 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQH--------------VLGGKSGHHNFVNDIDIADVYSAD 151 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEE--------------EECTTTSCSSCEEEEEEEEEECTT
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceee--------------eecccCCCCCceEEEEEccccccc
Confidence 345555566777999999999999999999987664321000 0011223433444 4433
Q ss_pred ---cCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCC-EEEEEeCCCcEEEEECCCCceEEEEecCCc
Q 011711 160 ---LSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSD-KLYSGSRDGTVQLWDCHTGQSASVINLGAE 235 (479)
Q Consensus 160 ---~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~-~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~ 235 (479)
.+..+++|+.|++|+|||+.++ ..+..+.+|.+.|.+++|+|++. +|++++.|++|++||+.+++..........
T Consensus 152 ~~~d~~~las~s~D~tv~~Wd~~~~-~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~ 230 (393)
T 4gq1_A 152 NRLAEQVIASVGDDCTLIIWRLTDE-GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL 230 (393)
T ss_dssp CSEEEEEEEEEETTSEEEEEEEETT-EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------
T ss_pred cCCCCCEEEEEECCCeEEEEECCCC-ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC
Confidence 3458999999999999999888 66777788999999999999874 899999999999999999876554432111
Q ss_pred eeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEc-CC--EEEEEeCCCcEEEEEccCCCCCcccceeee
Q 011711 236 VGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVA-NE--MLFAGAQDGNILVWKGIPNTQNPFQLAALL 312 (479)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~-~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 312 (479)
... .-.+..............+|...+.++.|. ++ .+++++.|+.+++||+..... ...+
T Consensus 231 ~~~------------~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~-----~~~l 293 (393)
T 4gq1_A 231 VKN------------PWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND-----YNEI 293 (393)
T ss_dssp CSC------------CCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------
T ss_pred ccc------------ceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC-----CceE
Confidence 000 000000000001112334677888889886 33 999999999999999876543 1222
Q ss_pred cCCCCCe-------------------EEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCE
Q 011711 313 KGHTRPV-------------------TCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQY 368 (479)
Q Consensus 313 ~~h~~~i-------------------~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~ 368 (479)
..|...+ .++.+. +.++++|+.||+|++||+.+++++..+..|...|.+++|+ |++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~ 373 (393)
T 4gq1_A 294 SDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSH 373 (393)
T ss_dssp ----------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSE
T ss_pred eeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCE
Confidence 2222222 222222 3467788899999999999999999999999999999998 789
Q ss_pred EEEEeCCCeEEEEEc
Q 011711 369 LLSCSLDNTIKVWIM 383 (479)
Q Consensus 369 l~s~s~dg~i~iwd~ 383 (479)
|++++.+| +.+|.+
T Consensus 374 LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 374 LAIATEGS-VLLTRL 387 (393)
T ss_dssp EEEEESSE-EEEEEE
T ss_pred EEEEeCCC-eEEEEE
Confidence 99998776 666654
No 127
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.93 E-value=7.8e-24 Score=201.40 Aligned_cols=215 Identities=12% Similarity=0.190 Sum_probs=169.6
Q ss_pred eEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCce
Q 011711 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAE 264 (479)
Q Consensus 185 ~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~ 264 (479)
...+.+|.+.|++++|+|++++|++++.||.|++||+.++...... .
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---------------------------------~ 50 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWEL---------------------------------S 50 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEE---------------------------------E
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCccee---------------------------------c
Confidence 3457899999999999999999999999999999999876432111 1
Q ss_pred EEecCCCccEEEEEEcC----CEEEEEeCCCcEEEEEccCCCCC----cccceeeecCCCCCeEEEEEc----CCEEEEE
Q 011711 265 FSLDGPVGEVYSMVVAN----EMLFAGAQDGNILVWKGIPNTQN----PFQLAALLKGHTRPVTCLAVG----GKRLYSG 332 (479)
Q Consensus 265 ~~~~~~~~~v~~~~~~~----~~l~~g~~dg~i~iwd~~~~~~~----~~~~~~~~~~h~~~i~~l~~~----~~~l~sg 332 (479)
..+.+|...|.+++|++ ++|++|+.||.|++||+..+... ..+....+..|...|.+++|+ +++++++
T Consensus 51 ~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 130 (351)
T 3f3f_A 51 DSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACL 130 (351)
T ss_dssp EEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred ceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEe
Confidence 23457899999999986 39999999999999999876421 124567788999999999996 6789999
Q ss_pred eCCCeEEEEECCCCcEEEEEe-------------CCCCCcEEEEEc-----CCEEEEEeCCCeEEEEEcCCCcc--eEEe
Q 011711 333 SMDNTIRVWDLDTLEAVMTLN-------------GHTDAPMSLLCW-----DQYLLSCSLDNTIKVWIMTEEGN--LEVA 392 (479)
Q Consensus 333 s~dg~I~iwd~~~~~~~~~~~-------------~h~~~v~~~~~~-----~~~l~s~s~dg~i~iwd~~~~~~--~~~~ 392 (479)
+.||.|++||+++++.+..+. .|...+.++.+. +.++++++.|+.+.+|+...... ...+
T Consensus 131 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (351)
T 3f3f_A 131 GNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKL 210 (351)
T ss_dssp ETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEEC
T ss_pred cCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeec
Confidence 999999999999877544332 577788999886 67999999999998888776654 4444
Q ss_pred ccccCccceEEEeeeeCCCCC---cEEEEEeCCCeEEEeecCCCcee
Q 011711 393 YTHNEDHGVLALGGLNDPDGN---PVLICSCNDDSVHLYELPSFMER 436 (479)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~ 436 (479)
..|...+..+.+ +|++. .+|++++.|+.|++||+.++...
T Consensus 211 ~~h~~~i~~~~~----~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 253 (351)
T 3f3f_A 211 PGHKSLIRSISW----APSIGRWYQLIATGCKDGRIRIFKITEKLSP 253 (351)
T ss_dssp CCCCSCEEEEEE----CCCSSCSSEEEEEEETTSCEEEEEEEECC--
T ss_pred CCCCcceeEEEE----CCCCCCcceEEEEEcCCCeEEEEeCCCCcCc
Confidence 456665555554 58872 48999999999999999875443
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=1.3e-22 Score=205.02 Aligned_cols=320 Identities=10% Similarity=0.051 Sum_probs=232.7
Q ss_pred CCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeee-ecCCCeEEEeccCCeeEeCCCCCeEE
Q 011711 96 YNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLE-RTTPKNVCYHWLSGNCVKGDECRFWH 174 (479)
Q Consensus 96 ~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~c~~~~~~~~~~g~~d~~i~ 174 (479)
.+++|+|+++++++.|+++.+||..+... ...+. ++....+.+.+.+..+++++.|+.|+
T Consensus 143 ~~~~p~~~~~vs~~~d~~V~v~D~~t~~~-------------------~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~ 203 (543)
T 1nir_A 143 NDLDLPNLFSVTLRDAGQIALVDGDSKKI-------------------VKVIDTGYAVHISRMSASGRYLLVIGRDARID 203 (543)
T ss_dssp SCCCGGGEEEEEEGGGTEEEEEETTTCCE-------------------EEEEECSTTEEEEEECTTSCEEEEEETTSEEE
T ss_pred cccCCCCEEEEEEcCCCeEEEEECCCceE-------------------EEEEecCcccceEEECCCCCEEEEECCCCeEE
Confidence 34899999999999999999997554321 11111 11223566888888999999999999
Q ss_pred Eeec--CCCceeeEEEecccccEEEEEeCC----CCCEEEEEeC-CCcEEEEECCCCceEEEEecCC------------c
Q 011711 175 SWFC--GEGFTMLAKLEGHKKAVSGIALPL----RSDKLYSGSR-DGTVQLWDCHTGQSASVINLGA------------E 235 (479)
Q Consensus 175 vw~~--~~~~~~~~~~~~H~~~V~~l~~s~----~~~~l~s~s~-Dg~v~vwd~~~~~~~~~~~~~~------------~ 235 (479)
+||+ .++ +.+.++.. ...+..++|+| ||++|++++. +++|.+||..+++++..+.... .
T Consensus 204 v~D~~~~t~-~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~ 281 (543)
T 1nir_A 204 MIDLWAKEP-TKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR 281 (543)
T ss_dssp EEETTSSSC-EEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred EEECcCCCC-cEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCc
Confidence 9999 666 77888874 45679999999 9999999984 8999999999999998887521 2
Q ss_pred eeEEEe--CCCEEEEE--cCCeEEEEEcCCCceEE--ecCCCccEEEEEEcCC--EEEE-EeCCCcEEEEEccCCCCCcc
Q 011711 236 VGSLIC--EGPWVFVG--MPNVVKAWHIESSAEFS--LDGPVGEVYSMVVANE--MLFA-GAQDGNILVWKGIPNTQNPF 306 (479)
Q Consensus 236 ~~~~~~--~~~~l~~~--~~~~i~v~~~~~~~~~~--~~~~~~~v~~~~~~~~--~l~~-g~~dg~i~iwd~~~~~~~~~ 306 (479)
+..+.. ++..++++ .++.|.+||..+.+... ...+...+..+.|+++ ++++ +..+++|.+||..+++.
T Consensus 282 v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l--- 358 (543)
T 1nir_A 282 VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL--- 358 (543)
T ss_dssp EEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE---
T ss_pred eEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE---
Confidence 344443 45555443 67899999998765432 2235566778899988 5554 45689999999988643
Q ss_pred cceeeecC----CCCCeEEEEE-c-CCEEEEEe-CCCeEEEEECCC-------CcEEEEEeCCCCCcEEEEEc--CCEEE
Q 011711 307 QLAALLKG----HTRPVTCLAV-G-GKRLYSGS-MDNTIRVWDLDT-------LEAVMTLNGHTDAPMSLLCW--DQYLL 370 (479)
Q Consensus 307 ~~~~~~~~----h~~~i~~l~~-~-~~~l~sgs-~dg~I~iwd~~~-------~~~~~~~~~h~~~v~~~~~~--~~~l~ 370 (479)
...+.. |......+.. + +..++++. .|++|.+||+.+ .++++++..|...+..+.++ +++|+
T Consensus 359 --~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~ 436 (543)
T 1nir_A 359 --SALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLY 436 (543)
T ss_dssp --EEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEE
T ss_pred --EEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEE
Confidence 343432 5544444433 3 55566665 589999999998 89999999998887777776 78999
Q ss_pred EEe-------CCCeEEEEEcCCCcce-EEeccc----cCccceEEEeeeeCCCCCcEEEEEe----CCCeEEEeecCCCc
Q 011711 371 SCS-------LDNTIKVWIMTEEGNL-EVAYTH----NEDHGVLALGGLNDPDGNPVLICSC----NDDSVHLYELPSFM 434 (479)
Q Consensus 371 s~s-------~dg~i~iwd~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~l~s~~----~dg~v~iwd~~~~~ 434 (479)
+++ .+++|.+||+.+.+.. ..+... -...........++|+|+.++++.. .|+.|.|||..+++
T Consensus 437 v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 437 VDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 516 (543)
T ss_dssp ECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred EecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence 887 2779999999988876 333110 0111234455567899996666542 47999999999999
Q ss_pred eeeeeec
Q 011711 435 ERGRIFS 441 (479)
Q Consensus 435 ~~~~~~~ 441 (479)
++..+..
T Consensus 517 ~~~~i~~ 523 (543)
T 1nir_A 517 LKAVVKD 523 (543)
T ss_dssp EEEEECC
T ss_pred EEEeecC
Confidence 9888774
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.90 E-value=6.4e-21 Score=186.76 Aligned_cols=268 Identities=10% Similarity=-0.017 Sum_probs=197.3
Q ss_pred eEEEeec--CCCceee--EEEecccccEEEEEeCC--------------CCCEEEEEeCC------CcEEEEECCCCceE
Q 011711 172 FWHSWFC--GEGFTML--AKLEGHKKAVSGIALPL--------------RSDKLYSGSRD------GTVQLWDCHTGQSA 227 (479)
Q Consensus 172 ~i~vw~~--~~~~~~~--~~~~~H~~~V~~l~~s~--------------~~~~l~s~s~D------g~v~vwd~~~~~~~ 227 (479)
.+++||+ .++ +.+ ..+.+|...+..+++++ .+..++.++.+ +.|++||+..+...
T Consensus 94 ~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~ 172 (415)
T 2hqs_A 94 AYQLVDTGGAPG-TVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQF 172 (415)
T ss_dssp EEEEEECSSSTT-CEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCE
T ss_pred EEEEEeCCCCCC-CEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCE
Confidence 8999999 887 455 56899999998888764 25667766654 79999999865544
Q ss_pred EEEecCCceeEEE--eCCCEEEEE-cC---CeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEE-EEeCCCc--EEEE
Q 011711 228 SVINLGAEVGSLI--CEGPWVFVG-MP---NVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLF-AGAQDGN--ILVW 296 (479)
Q Consensus 228 ~~~~~~~~~~~~~--~~~~~l~~~-~~---~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~-~g~~dg~--i~iw 296 (479)
........+.++. ++++.++.+ .+ ..|++||+.+++...+..+...+.+++|+|+ .|+ +++.++. |++|
T Consensus 173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~ 252 (415)
T 2hqs_A 173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 252 (415)
T ss_dssp EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEE
Confidence 4444555555544 478877765 44 3999999999998888888889999999988 565 6666665 9999
Q ss_pred EccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeC-CC--eEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEE
Q 011711 297 KGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSM-DN--TIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYL 369 (479)
Q Consensus 297 d~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~-dg--~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l 369 (479)
|+.++. ...+..|...+.+++|+ +++|++++. ++ .|.+||+.+++. ..+..+...+.++.++ +++|
T Consensus 253 d~~~~~------~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l 325 (415)
T 2hqs_A 253 DLASGQ------IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFM 325 (415)
T ss_dssp ETTTCC------EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEE
T ss_pred ECCCCC------EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEE
Confidence 987754 34567788899999996 788888776 44 688889988774 4455566677778876 7888
Q ss_pred EEEeCC---CeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCC---eEEEeecCCCceeeeeeccC
Q 011711 370 LSCSLD---NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD---SVHLYELPSFMERGRIFSRR 443 (479)
Q Consensus 370 ~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~ 443 (479)
++++.+ ..|++||+.+++. ..+..+. ... ...++|+|+ +|+.++.++ .|++||+..........+.+
T Consensus 326 ~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~----~~~~spdg~-~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~ 398 (415)
T 2hqs_A 326 VMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDE----TPSLAPNGT-MVIYSSSQGMGSVLNLVSTDGRFKARLPATDG 398 (415)
T ss_dssp EEEEECSSCEEEEEEETTTCCE-EECCCSS-SCE----EEEECTTSS-EEEEEEEETTEEEEEEEETTSCCEEECCCSSS
T ss_pred EEEECcCCceEEEEEECCCCCE-EEecCCC-CcC----CeEEcCCCC-EEEEEEcCCCccEEEEEECCCCcEEEeeCCCC
Confidence 887764 5899999987765 3333332 333 334579999 555555555 79999997555443334578
Q ss_pred ceEEEEECCCc
Q 011711 444 EVRVIETGPDG 454 (479)
Q Consensus 444 ~v~~l~~s~~g 454 (479)
.|.+++|+|.-
T Consensus 399 ~v~~~~~~~~~ 409 (415)
T 2hqs_A 399 QVKFPAWSPYL 409 (415)
T ss_dssp EEEEEEECCCC
T ss_pred CCcCCcccccc
Confidence 99999999964
No 130
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=1e-21 Score=214.71 Aligned_cols=350 Identities=7% Similarity=0.024 Sum_probs=244.9
Q ss_pred CCCCCCCCC-------CCCCCCCCceeccCCCCC----Ccccc--ccccCCCCCCCCCCccccccCcCCCCCeeeeeecC
Q 011711 85 PVSNHKKSP-------PSYNCPKNNVRVSSGSEE----GTTHV--QNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTT 151 (479)
Q Consensus 85 ~~~gh~~~i-------~~~~~s~~g~~las~~~d----g~i~i--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (479)
.+.+|...+ .+++|||||+.+++++.| +..+| |+..+... ..+....
T Consensus 94 ~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~l~~~~ 153 (1045)
T 1k32_A 94 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF--------------------VPLNLGP 153 (1045)
T ss_dssp ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE--------------------EECCSCS
T ss_pred EcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCe--------------------EEecCCC
Confidence 345666666 789999999988887755 44444 44332211 0000111
Q ss_pred CCeEEEeccCCeeEeCC------------CCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEE
Q 011711 152 PKNVCYHWLSGNCVKGD------------ECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLW 219 (479)
Q Consensus 152 ~~~~c~~~~~~~~~~g~------------~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vw 219 (479)
...+.+.+ + .+++++ .+...++|....+ .....+.+|...+.++.|+++ .++++++.|++++||
T Consensus 154 ~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~-~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~ 229 (1045)
T 1k32_A 154 ATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-GAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIY 229 (1045)
T ss_dssp CSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEET-TEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEE
T ss_pred cceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCC-CCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEE
Confidence 12333444 3 444432 1345566665444 345666899999999999988 677788889999999
Q ss_pred ECCC-CceEEEEecCCc--eeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecC-----------CCccEEEEEEc-CC--
Q 011711 220 DCHT-GQSASVINLGAE--VGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDG-----------PVGEVYSMVVA-NE-- 282 (479)
Q Consensus 220 d~~~-~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~-----------~~~~v~~~~~~-~~-- 282 (479)
.+.. +.....+..... ...+.++|+.++.+.++.|.+|++.......+.. +...+.+++|+ |+
T Consensus 230 ~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~ 309 (1045)
T 1k32_A 230 STDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGD 309 (1045)
T ss_dssp EEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGG
T ss_pred EEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCC
Confidence 8653 333344433322 4466789998888889999999996555544333 23368899999 88
Q ss_pred EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCC-CeEEEEEc-CCEEEEEeCCCeEE-EEECCCCcEEEEEeCCCCCc
Q 011711 283 MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR-PVTCLAVG-GKRLYSGSMDNTIR-VWDLDTLEAVMTLNGHTDAP 359 (479)
Q Consensus 283 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~-~i~~l~~~-~~~l~sgs~dg~I~-iwd~~~~~~~~~~~~h~~~v 359 (479)
.|++++ ++.|.+|++..+. ...+..|.. .+..++|+ ++.+++++.++.+. +||+.+++.. .+..|...+
T Consensus 310 ~la~~~-~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~ 381 (1045)
T 1k32_A 310 LIAFVS-RGQAFIQDVSGTY------VLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNV 381 (1045)
T ss_dssp CEEEEE-TTEEEEECTTSSB------EEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSE
T ss_pred EEEEEE-cCEEEEEcCCCCc------eEEccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCce-EecCCccce
Confidence 677666 8899999987653 233566766 78888886 66788888888899 9999887654 444777888
Q ss_pred EEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCC----------CeEEE
Q 011711 360 MSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND----------DSVHL 427 (479)
Q Consensus 360 ~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d----------g~v~i 427 (479)
..+.++ +++|++++.++.|++||+.+++.......+...+..+.+ +|+|+ +|++++.+ +.|++
T Consensus 382 ~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~----SpDG~-~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 382 FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI----SDNSR-FIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEE----CTTSC-EEEEEEEECSSTTCSCCEEEEEE
T ss_pred eeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEE----CCCCC-eEEEEecCccccccCCCCCeEEE
Confidence 888887 789999999999999999988766655566655555555 69999 45555443 48999
Q ss_pred eecCCCceeeeeeccCceEEEEECCCc-eEEEEcCCCcEEEEEec
Q 011711 428 YELPSFMERGRIFSRREVRVIETGPDG-LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 428 wd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~ 471 (479)
||+.+++......+...+..++|+||| .|++++.++...+|+..
T Consensus 457 ~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 457 YDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred EECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 999988744434456778899999999 88888888877777643
No 131
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=2.1e-21 Score=212.23 Aligned_cols=350 Identities=8% Similarity=-0.053 Sum_probs=247.7
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeec-CCCeEEEeccCCeeE
Q 011711 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERT-TPKNVCYHWLSGNCV 165 (479)
Q Consensus 87 ~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~c~~~~~~~~~ 165 (479)
.+|...+.++.|+++ ..+++++.||+++||........ . ..+..+ .....++.+.+..++
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~---~---------------~~l~~~~~~~~~~~SpDG~~la 260 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKD---L---------------RKHTSFTDYYPRHLNTDGRRIL 260 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCS---C---------------EECCCCCSSCEEEEEESSSCEE
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCc---c---------------eEecCCCCcceeeEcCCCCEEE
Confidence 578888999999998 66677778999999975532210 0 000000 112446666666677
Q ss_pred eCCCCCeEEEeecCCCceeeEEEec-----------ccccEEEEEeC-CCCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 011711 166 KGDECRFWHSWFCGEGFTMLAKLEG-----------HKKAVSGIALP-LRSDKLYSGSRDGTVQLWDCHTGQSASVINLG 233 (479)
Q Consensus 166 ~g~~d~~i~vw~~~~~~~~~~~~~~-----------H~~~V~~l~~s-~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~ 233 (479)
.+ .++.|.+|++... .+..+.+ |...|.+++|+ |||++|++++ ++.|.+|++.+++........
T Consensus 261 ~~-~~~~i~~~d~~~~--~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~ 336 (1045)
T 1k32_A 261 FS-KGGSIYIFNPDTE--KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPL 336 (1045)
T ss_dssp EE-ETTEEEEECTTTC--CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCS
T ss_pred EE-eCCEEEEecCCce--EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCC
Confidence 66 5899999999443 3335555 45679999999 9999999988 789999999988755433333
Q ss_pred C-ceeEEEe-CCCEEE-EEcCCeEE-EEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCccc
Q 011711 234 A-EVGSLIC-EGPWVF-VGMPNVVK-AWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQ 307 (479)
Q Consensus 234 ~-~~~~~~~-~~~~l~-~~~~~~i~-v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~ 307 (479)
. .+..+.+ +++.++ ++.++.+. +|++.++....+..+...+..++|+|+ .|++++.++.|++||+.++..
T Consensus 337 ~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~---- 412 (1045)
T 1k32_A 337 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP---- 412 (1045)
T ss_dssp CEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE----
T ss_pred cceEEeeeEcCCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce----
Confidence 3 3333322 455454 44566788 889998887776677889999999988 899999999999999987642
Q ss_pred ceeeecCCCCCeEEEEEc--CCEEEEEeCCC----------eEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEe
Q 011711 308 LAALLKGHTRPVTCLAVG--GKRLYSGSMDN----------TIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCS 373 (479)
Q Consensus 308 ~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg----------~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s 373 (479)
.....+|...+.+++|+ +++|++++.++ .|++||+.+++ +..+..|...+..+.|+ +++|++++
T Consensus 413 -~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s 490 (1045)
T 1k32_A 413 -TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLS 490 (1045)
T ss_dssp -EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred -EEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEe
Confidence 44455788899999996 88888877654 99999999887 67788888878888887 78999999
Q ss_pred CCCeEEEEEcCCCcc-------e------------------------------------EEeccccCccceEEEeeeeCC
Q 011711 374 LDNTIKVWIMTEEGN-------L------------------------------------EVAYTHNEDHGVLALGGLNDP 410 (479)
Q Consensus 374 ~dg~i~iwd~~~~~~-------~------------------------------------~~~~~~~~~~~~~~~~~~~~~ 410 (479)
.++...+|+...... + ..+..+.... ....++|
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~----~~~~~s~ 566 (1045)
T 1k32_A 491 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY----RMIIPLE 566 (1045)
T ss_dssp SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCE----EEEEECS
T ss_pred cccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCCh----hheEEcC
Confidence 888877776532211 0 0000111111 2233468
Q ss_pred CCCcEEEE-------------EeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 411 DGNPVLIC-------------SCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 411 ~~~~~l~s-------------~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
+|. ++++ ......|.+||+.+++... +. ..+..++++||| .|++++.+ .|++|++.+++
T Consensus 567 dg~-~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~--~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 567 SSI-LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-VK--NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp SEE-EEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-EE--EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred CCe-EEEEecccCcccccccccCCCceEEEEECCCCcEEE-ee--cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 886 4543 1235578899998877532 22 668899999999 88888766 89999998766
No 132
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=1.1e-20 Score=198.32 Aligned_cols=302 Identities=11% Similarity=-0.006 Sum_probs=206.2
Q ss_pred CCeeEeCCCCCeEEEeecCCCceee-EEEeccc-----------------ccEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTML-AKLEGHK-----------------KAVSGIALPLRSDKLYSGSRDGTVQLWDCH 222 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~-~~~~~H~-----------------~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~ 222 (479)
++.+++.+.++ | +||+.++ +.+ ..+..|. ..|.+++|+|| +.++.+. |+.|++||+.
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~ 109 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANG-KSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLVGFDML 109 (706)
T ss_dssp TTEEEEEETTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEEEEEETT
T ss_pred CCeEEEEeCCc-E-EEECCCC-cEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEEEEEECC
Confidence 66777777777 7 9999988 442 4444444 46999999999 6655553 5999999999
Q ss_pred CCceEEEEecCCce--eEEEeCCCEEEEEcCCeEEEEEcCC-----CceEEecC-CCcc--------------EEEEEEc
Q 011711 223 TGQSASVINLGAEV--GSLICEGPWVFVGMPNVVKAWHIES-----SAEFSLDG-PVGE--------------VYSMVVA 280 (479)
Q Consensus 223 ~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~i~v~~~~~-----~~~~~~~~-~~~~--------------v~~~~~~ 280 (479)
+++..........+ ..+.++|+.++...++.|.+|++.+ ++...+.. +... +.++.|+
T Consensus 110 ~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~S 189 (706)
T 2z3z_A 110 ARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWS 189 (706)
T ss_dssp TTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEEC
T ss_pred CCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEEC
Confidence 98876665544433 3556799999989999999999998 76654332 2222 4789999
Q ss_pred CC--EEEEEe---------------------------------CCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc
Q 011711 281 NE--MLFAGA---------------------------------QDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG 325 (479)
Q Consensus 281 ~~--~l~~g~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~ 325 (479)
|+ .|++++ .+..|++||+.++.. ..+.....|...+.+++|+
T Consensus 190 pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~---~~~~~~~~~~~~~~~~~~s 266 (706)
T 2z3z_A 190 PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT---VYLQTGEPKEKFLTNLSWS 266 (706)
T ss_dssp TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE---EECCCCSCTTCEEEEEEEC
T ss_pred CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce---EeeccCCCCceeEeeEEEE
Confidence 88 777776 446799999987642 1111123567789999996
Q ss_pred --CCEEEEEeCCC-----eEEEEECCCCcEEEEEe--CCCC---CcEEEEE----cCCEEEEEeCCCeEEEEEcC-CCcc
Q 011711 326 --GKRLYSGSMDN-----TIRVWDLDTLEAVMTLN--GHTD---APMSLLC----WDQYLLSCSLDNTIKVWIMT-EEGN 388 (479)
Q Consensus 326 --~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~--~h~~---~v~~~~~----~~~~l~s~s~dg~i~iwd~~-~~~~ 388 (479)
++.|++++.++ .|++||+.+++....+. .+.. .+..+.+ +++++++++.|+.+++|+++ +++.
T Consensus 267 pdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~ 346 (706)
T 2z3z_A 267 PDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRL 346 (706)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCE
T ss_pred CCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCE
Confidence 88888887776 99999999984444332 2222 1233444 56788899999999999886 4444
Q ss_pred eEEeccccCccceEEEeeeeCCCCCcEEEEEeCCC----eEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcC-C
Q 011711 389 LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD----SVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDG-T 462 (479)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg----~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~-d 462 (479)
+..+..+...+.. ...++|+++.+++++..++ .|..||+.+++ ...+.+...+.+++|+||| .|+.... +
T Consensus 347 ~~~l~~~~~~v~~---~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~spdg~~l~~~~~~~ 422 (706)
T 2z3z_A 347 IRQVTKGEWEVTN---FAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLTPESGMHRTQLSPDGSAIIDIFQSP 422 (706)
T ss_dssp EEECCCSSSCEEE---EEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESCCSSSEEEEEECTTSSEEEEEEECS
T ss_pred EEecCCCCeEEEe---eeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceeccCCCceEEEEECCCCCEEEEEecCC
Confidence 5555444333222 1345799986777776665 67777877765 4445567779999999999 6655433 3
Q ss_pred ---CcEEEEEeccCC
Q 011711 463 ---GMLSVWKILAKP 474 (479)
Q Consensus 463 ---g~v~vw~~~~~~ 474 (479)
+.|++||+..++
T Consensus 423 ~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 423 TVPRKVTVTNIGKGS 437 (706)
T ss_dssp SCSCEEEEEESSSCE
T ss_pred CCCcEEEEEECCCCe
Confidence 569999987653
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=1.2e-20 Score=199.09 Aligned_cols=312 Identities=10% Similarity=-0.001 Sum_probs=219.9
Q ss_pred CeEEEeccCCeeEeCCC-CC-----eEEEeecCCCceeeEEEecccc------------------------cEEEEEeCC
Q 011711 153 KNVCYHWLSGNCVKGDE-CR-----FWHSWFCGEGFTMLAKLEGHKK------------------------AVSGIALPL 202 (479)
Q Consensus 153 ~~~c~~~~~~~~~~g~~-d~-----~i~vw~~~~~~~~~~~~~~H~~------------------------~V~~l~~s~ 202 (479)
..+.+.+.+..+++++. |+ .|.+||+.++ +....+..|.. .|.+++|+|
T Consensus 40 ~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp 118 (741)
T 2ecf_A 40 MKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG-QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP 118 (741)
T ss_dssp EEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC-CEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred CCceEecCCCEEEEEeccCCCCcccEEEEEECCCC-ceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence 45677778888888877 87 9999999988 55566655543 388999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCC---ceEEEEecCCceeE--EEeCCCEEEEEcCCeEEEEEcCCCceEEecCC-Ccc---
Q 011711 203 RSDKLYSGSRDGTVQLWDCHTG---QSASVINLGAEVGS--LICEGPWVFVGMPNVVKAWHIESSAEFSLDGP-VGE--- 273 (479)
Q Consensus 203 ~~~~l~s~s~Dg~v~vwd~~~~---~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~-~~~--- 273 (479)
||++|++++. +.|++||+.++ +..........+.. +.++|+.++.+.++.|.+||+.+++...+... ...
T Consensus 119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 197 (741)
T 2ecf_A 119 DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGN 197 (741)
T ss_dssp TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEE
T ss_pred CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccceec
Confidence 9999999987 99999999988 54443333344443 44699999988889999999998876654332 221
Q ss_pred -------------EEEEEEcCC--EEEEEeCCC---------------------------------cEEEEEccC-CCCC
Q 011711 274 -------------VYSMVVANE--MLFAGAQDG---------------------------------NILVWKGIP-NTQN 304 (479)
Q Consensus 274 -------------v~~~~~~~~--~l~~g~~dg---------------------------------~i~iwd~~~-~~~~ 304 (479)
+.++.|+|+ .|++++.|+ .|.+||+.+ +...
T Consensus 198 g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 277 (741)
T 2ecf_A 198 GIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQ 277 (741)
T ss_dssp SCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCE
T ss_pred cccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceE
Confidence 467899988 777777665 788889877 5421
Q ss_pred cccceeeecCCCCCeEEEEE-cCCEEEEEeC-----CCeEEEEECCCCcEEEEEeCCCC----CcEEEEEc--CCEEEEE
Q 011711 305 PFQLAALLKGHTRPVTCLAV-GGKRLYSGSM-----DNTIRVWDLDTLEAVMTLNGHTD----APMSLLCW--DQYLLSC 372 (479)
Q Consensus 305 ~~~~~~~~~~h~~~i~~l~~-~~~~l~sgs~-----dg~I~iwd~~~~~~~~~~~~h~~----~v~~~~~~--~~~l~s~ 372 (479)
.+.....|...+..++| +++.|++++. +..|++||+.+++....+..+.. .+..+.++ +++++++
T Consensus 278 ---~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~ 354 (741)
T 2ecf_A 278 ---WIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSS 354 (741)
T ss_dssp ---EECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEE
T ss_pred ---EecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEe
Confidence 11111246677777776 5778887653 57899999999998877765543 23455555 7788899
Q ss_pred eCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCC--eEEEeecCC-CceeeeeeccCceEEEE
Q 011711 373 SLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD--SVHLYELPS-FMERGRIFSRREVRVIE 449 (479)
Q Consensus 373 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg--~v~iwd~~~-~~~~~~~~~~~~v~~l~ 449 (479)
+.||.++||.++.......+..+...+..+ ..++|+++.++++++.++ .+++|+++. +.....+.....+..++
T Consensus 355 ~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~---~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~ 431 (741)
T 2ecf_A 355 ERTGFQHLYRIDSKGKAAALTHGNWSVDEL---LAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSAS 431 (741)
T ss_dssp CTTSSCEEEEECSSSCEEESCCSSSCEEEE---EEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEE
T ss_pred cCCCccEEEEEcCCCCeeeeeecceEEEeE---eEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEE
Confidence 999988888776322244454444333222 124699986667777666 899999864 44455555567789999
Q ss_pred ECCCc-eEEEEcCC----CcEEEEEecc
Q 011711 450 TGPDG-LFFTGDGT----GMLSVWKILA 472 (479)
Q Consensus 450 ~s~~g-~l~sg~~d----g~v~vw~~~~ 472 (479)
|+||| .|+....+ +.+.+|+...
T Consensus 432 ~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 432 FARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp ECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred ECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 99999 55544333 5688888643
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.88 E-value=1.2e-20 Score=184.83 Aligned_cols=271 Identities=13% Similarity=0.075 Sum_probs=196.1
Q ss_pred ccccEEEEEeCCCCC-EEEEEe----CCC----cEEEEEC--CCCceEEE--EecCCc-eeEEE----------------
Q 011711 191 HKKAVSGIALPLRSD-KLYSGS----RDG----TVQLWDC--HTGQSASV--INLGAE-VGSLI---------------- 240 (479)
Q Consensus 191 H~~~V~~l~~s~~~~-~l~s~s----~Dg----~v~vwd~--~~~~~~~~--~~~~~~-~~~~~---------------- 240 (479)
+...|...+|.+.+. ++++|+ .|| +|++||+ .+++.+.. +..+.. +..+.
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 345677788877765 565776 467 9999999 99987743 332221 11111
Q ss_pred -eCCCEEEEEcC------CeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCC---cEEEEEccCCCCCcccc
Q 011711 241 -CEGPWVFVGMP------NVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDG---NILVWKGIPNTQNPFQL 308 (479)
Q Consensus 241 -~~~~~l~~~~~------~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg---~i~iwd~~~~~~~~~~~ 308 (479)
+..++++++.+ +.|++||+.+.....+..|...+.+++|+|+ .|++++.++ .|++||+.++.
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~------ 214 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA------ 214 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC------
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc------
Confidence 13344555543 7999999998777778888899999999998 888888875 99999998764
Q ss_pred eeeecCCCCCeEEEEEc--CCEEE-EEeCCCe--EEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeC-CC--eE
Q 011711 309 AALLKGHTRPVTCLAVG--GKRLY-SGSMDNT--IRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSL-DN--TI 378 (479)
Q Consensus 309 ~~~~~~h~~~i~~l~~~--~~~l~-sgs~dg~--I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~-dg--~i 378 (479)
...+..|...+.+++|+ ++.|+ +++.|+. |++||+.+++. ..+..|...+.++.|+ +++|++++. ++ .|
T Consensus 215 ~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 215 VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred EEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEE
Confidence 23456788899999997 77776 6666654 99999998876 6777888888888887 678888776 44 68
Q ss_pred EEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeC--CCeEEEeecCCCceeeeeeccCceEEEEECCCc-e
Q 011711 379 KVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCN--DDSVHLYELPSFMERGRIFSRREVRVIETGPDG-L 455 (479)
Q Consensus 379 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~ 455 (479)
.+||+.++.. ..+..+... .....++|+|+.+++++.. +..|++||+.+++... +.....+.+++|+|+| .
T Consensus 294 ~~~d~~~~~~-~~l~~~~~~----~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~~~~~~~~~spdg~~ 367 (415)
T 2hqs_A 294 YKVNINGGAP-QRITWEGSQ----NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSSTFLDETPSLAPNGTM 367 (415)
T ss_dssp EEEETTSSCC-EECCCSSSE----EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCSSSCEEEEECTTSSE
T ss_pred EEEECCCCCE-EEEecCCCc----ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecCCCCcCCeEEcCCCCE
Confidence 8889877653 333333332 3345568999944444443 3589999999887743 3334489999999999 7
Q ss_pred EEEEcCCC---cEEEEEeccCC
Q 011711 456 FFTGDGTG---MLSVWKILAKP 474 (479)
Q Consensus 456 l~sg~~dg---~v~vw~~~~~~ 474 (479)
|++++.++ .|++|++..+.
T Consensus 368 l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 368 VIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEEEEETTEEEEEEEETTSCC
T ss_pred EEEEEcCCCccEEEEEECCCCc
Confidence 88877776 79999987543
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=1.3e-19 Score=172.17 Aligned_cols=269 Identities=15% Similarity=0.262 Sum_probs=178.8
Q ss_pred eEeCCCCCeEEEeecCC-C-ceeeEEEecccccEEEEEeCCCCCEEEEEeCC-CcEEEEECC--CCceEEEEecCCceeE
Q 011711 164 CVKGDECRFWHSWFCGE-G-FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD-GTVQLWDCH--TGQSASVINLGAEVGS 238 (479)
Q Consensus 164 ~~~g~~d~~i~vw~~~~-~-~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~D-g~v~vwd~~--~~~~~~~~~~~~~~~~ 238 (479)
+++++.++.|++|++.. + .+.+.. ..|...+.+++|+|++++|++++.+ +.|.+|++. +++......
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~------- 79 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE------- 79 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE-------
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccc-------
Confidence 44557799999999963 3 233333 3577889999999999999998887 999999987 444321111
Q ss_pred EEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEe-CCCcEEEEEccCCCCCcccceeeecCC
Q 011711 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGA-QDGNILVWKGIPNTQNPFQLAALLKGH 315 (479)
Q Consensus 239 ~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~h 315 (479)
... ...+..++++++ .+++++ .++.|.+||+..+.. .+....+..+
T Consensus 80 ----------------------------~~~-~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~ 128 (343)
T 1ri6_A 80 ----------------------------SAL-PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP--VGVVDVVEGL 128 (343)
T ss_dssp ----------------------------EEC-SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE--EEEEEEECCC
T ss_pred ----------------------------ccc-CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc--ccccccccCC
Confidence 111 125677888877 565555 588999999852211 2233444433
Q ss_pred CCCeEEEEEc--CCEEEEEe-CCCeEEEEECCC-CcEEE----EEeCC-CCCcEEEEEc--CCEEEEE-eCCCeEEEEEc
Q 011711 316 TRPVTCLAVG--GKRLYSGS-MDNTIRVWDLDT-LEAVM----TLNGH-TDAPMSLLCW--DQYLLSC-SLDNTIKVWIM 383 (479)
Q Consensus 316 ~~~i~~l~~~--~~~l~sgs-~dg~I~iwd~~~-~~~~~----~~~~h-~~~v~~~~~~--~~~l~s~-s~dg~i~iwd~ 383 (479)
..+.+++|+ ++++++++ .++.|.+||+.+ ++... .+..+ ...+..+.++ +++++++ ..++.|.+|++
T Consensus 129 -~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~ 207 (343)
T 1ri6_A 129 -DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWEL 207 (343)
T ss_dssp -TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEES
T ss_pred -CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 457888886 77777777 899999999987 65432 33333 3456777776 6666555 47899999999
Q ss_pred CC--Ccc--eEEeccccCc--cceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC----CCceeeeeeccCceEEEEECCC
Q 011711 384 TE--EGN--LEVAYTHNED--HGVLALGGLNDPDGNPVLICSCNDDSVHLYELP----SFMERGRIFSRREVRVIETGPD 453 (479)
Q Consensus 384 ~~--~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~----~~~~~~~~~~~~~v~~l~~s~~ 453 (479)
.. +.. .......... .......+.++|+++.++++...++.|.+||+. ..+.+..+.....+..++|+|+
T Consensus 208 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~d 287 (343)
T 1ri6_A 208 KDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHS 287 (343)
T ss_dssp SCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTT
T ss_pred cCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCC
Confidence 64 222 1112111111 011122344579998666677789999999998 2344444554555999999999
Q ss_pred c-eEEEEc-CCCcEEEEEecc
Q 011711 454 G-LFFTGD-GTGMLSVWKILA 472 (479)
Q Consensus 454 g-~l~sg~-~dg~v~vw~~~~ 472 (479)
| .|++++ .++.|.+|+++.
T Consensus 288 g~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 288 GKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp SSEEEEECTTTCEEEEEEEET
T ss_pred CCEEEEecCCCCeEEEEEEcC
Confidence 9 666666 689999997763
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=4.6e-19 Score=167.93 Aligned_cols=268 Identities=7% Similarity=0.013 Sum_probs=189.1
Q ss_pred eeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeC-CCcEEEEECCCCce-EEEEecCCcee---
Q 011711 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR-DGTVQLWDCHTGQS-ASVINLGAEVG--- 237 (479)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~-Dg~v~vwd~~~~~~-~~~~~~~~~~~--- 237 (479)
.++++..++.|.+||..++ +.+..+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+..+....
T Consensus 12 ~~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 89 (331)
T 3u4y_A 12 GIVVEQHLRRISFFSTDTL-EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADV 89 (331)
T ss_dssp EEEEEGGGTEEEEEETTTC-CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCE
T ss_pred EEEEecCCCeEEEEeCccc-ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccce
Confidence 4678888999999999988 6777777777777 9999999997776665 89999999999987 66666554433
Q ss_pred EEEeCCCEEEEEcCC----eEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCc-EEEEEccCCCCCcccce
Q 011711 238 SLICEGPWVFVGMPN----VVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGN-ILVWKGIPNTQNPFQLA 309 (479)
Q Consensus 238 ~~~~~~~~l~~~~~~----~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~-i~iwd~~~~~~~~~~~~ 309 (479)
.+.+++++++++..+ .|.+||+.+++............+++++++ ++++...++. |.+|++...... ....
T Consensus 90 ~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~-~~~~ 168 (331)
T 3u4y_A 90 DITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVL-FDTG 168 (331)
T ss_dssp EECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCE-EEEE
T ss_pred EECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcE-eecC
Confidence 344688888876554 899999999887665555566789999988 4445566688 999998754321 1110
Q ss_pred eeecCCCCCeEEEEEc--CCEEE-EEeCCCeEEEEECCCCcE---EEEEeCCCCCcEEEEEc--CCEEEEEe-CCCeEEE
Q 011711 310 ALLKGHTRPVTCLAVG--GKRLY-SGSMDNTIRVWDLDTLEA---VMTLNGHTDAPMSLLCW--DQYLLSCS-LDNTIKV 380 (479)
Q Consensus 310 ~~~~~h~~~i~~l~~~--~~~l~-sgs~dg~I~iwd~~~~~~---~~~~~~h~~~v~~~~~~--~~~l~s~s-~dg~i~i 380 (479)
............++++ +++++ ++..++.|.+||+.+++. +..+..+ ..+..+.++ +++++.++ .++.|.+
T Consensus 169 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~ 247 (331)
T 3u4y_A 169 QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFN 247 (331)
T ss_dssp EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEE
T ss_pred CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEE
Confidence 1122344567889996 66554 455689999999999988 7777754 445666666 77666554 5788999
Q ss_pred EEcCCCcc--eEEeccc----cCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCce
Q 011711 381 WIMTEEGN--LEVAYTH----NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFME 435 (479)
Q Consensus 381 wd~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 435 (479)
||+.+++. +..+... ...... .-.+.++|+++.+++++..++.|.+||+.....
T Consensus 248 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 248 FNQLSGTLSFVKSFGHGLLIDPRPLFG-ANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp EETTTTEEEEEEEEECCCCCCCGGGTT-CCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred EECCCCceeeecccccccccCCCCccc-ccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 99988755 2222211 111111 011234699996667777788999999986543
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=1.6e-18 Score=165.51 Aligned_cols=261 Identities=14% Similarity=0.112 Sum_probs=196.3
Q ss_pred ccccEEEEEeCCCCCEEEEEeC-------CCcEEEEECCCCceEEEEecCCcee--EEEeCCCEEEEE--cCCeEEEEEc
Q 011711 191 HKKAVSGIALPLRSDKLYSGSR-------DGTVQLWDCHTGQSASVINLGAEVG--SLICEGPWVFVG--MPNVVKAWHI 259 (479)
Q Consensus 191 H~~~V~~l~~s~~~~~l~s~s~-------Dg~v~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~--~~~~i~v~~~ 259 (479)
....+..++|+|+++++++++. ++.|.+||..+++.+..+....... .+.++++.++++ .++.|.+||.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 3467889999999999988874 5689999999999998887665544 444577855544 4689999999
Q ss_pred CCCceEE-ecCCCc---------cEEEEEEcCC--EEEEEe--CCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc
Q 011711 260 ESSAEFS-LDGPVG---------EVYSMVVANE--MLFAGA--QDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG 325 (479)
Q Consensus 260 ~~~~~~~-~~~~~~---------~v~~~~~~~~--~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~ 325 (479)
.+++... ...+.. .+.++.++++ .++++. .++.|.+||..+.. ....+..+...+.+++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~s 193 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK-----LKTAIQNTGKMSTGLALD 193 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE-----EEEEECCCCTTCCCCEEE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc-----eEEEecCCCCccceEEEC
Confidence 9988753 222221 2688999877 565554 58899999988754 344555455557778885
Q ss_pred --CCEEEEEeCCCeEEEEECCCCcEEEEEeC----CCCCcEEEEEc--CCEEEEEeC-CCeEEEEEcCCCcceEEecccc
Q 011711 326 --GKRLYSGSMDNTIRVWDLDTLEAVMTLNG----HTDAPMSLLCW--DQYLLSCSL-DNTIKVWIMTEEGNLEVAYTHN 396 (479)
Q Consensus 326 --~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----h~~~v~~~~~~--~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~ 396 (479)
++++++++.++.|.+||+.+++.+..+.. +...+..+.++ +++++.++. ++.|.+||..+++.+..+....
T Consensus 194 ~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 273 (353)
T 3vgz_A 194 SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE 273 (353)
T ss_dssp TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence 88999999999999999999999888865 44456666766 676666655 5999999998887766555433
Q ss_pred CccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcCC
Q 011711 397 EDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDGT 462 (479)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~d 462 (479)
. ..+.+ +|+++.++++...++.|.+||..+++.+..+.....+..++|+|+| .|+.+..+
T Consensus 274 ~--~~~~~----s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 274 S--LAVLF----NPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp C--CCEEE----ETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred C--ceEEE----CCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 2 23333 5999867777768999999999999998888888889999999999 55554443
No 138
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=1.8e-19 Score=170.71 Aligned_cols=265 Identities=11% Similarity=0.042 Sum_probs=184.2
Q ss_pred eeEeCCCCCeEEEeecCCCceeeEEEeccc-c-cEEEEEeCCCCCEE-EEEeCCCcEEEEECCCCceEEEEecCCceeEE
Q 011711 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHK-K-AVSGIALPLRSDKL-YSGSRDGTVQLWDCHTGQSASVINLGAEVGSL 239 (479)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~-~-~V~~l~~s~~~~~l-~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~ 239 (479)
.+++++.++.|.+||..++ +.+..+.... . .+..++|+|+++++ ++++.++.|.+||+.+++.+..+......
T Consensus 3 ~~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--- 78 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKM-AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--- 78 (337)
T ss_dssp EEEEEETTTEEEEEETTTT-EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT---
T ss_pred EEEEcCCCCeEEEEECCCC-cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc---
Confidence 5778889999999999888 6777776332 2 58899999999876 45566789999999999877665432100
Q ss_pred EeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEe------------CCCcEEEEEccCCCCCc
Q 011711 240 ICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGA------------QDGNILVWKGIPNTQNP 305 (479)
Q Consensus 240 ~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~------------~dg~i~iwd~~~~~~~~ 305 (479)
.+...+..++++++ .++++. .++.|.+||+.++.
T Consensus 79 -----------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--- 126 (337)
T 1pby_B 79 -----------------------------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS--- 126 (337)
T ss_dssp -----------------------------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE---
T ss_pred -----------------------------cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc---
Confidence 00112345677765 666664 57999999987653
Q ss_pred ccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCC-CCcEEEEEcCCEEEEEeC-CC-----
Q 011711 306 FQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT-DAPMSLLCWDQYLLSCSL-DN----- 376 (479)
Q Consensus 306 ~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~l~s~s~-dg----- 376 (479)
....+.. ...+.+++++ +++++++ ++.|.+||+.+++.+..+..+. .....+..++..++..+. ++
T Consensus 127 --~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 201 (337)
T 1pby_B 127 --RRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATP 201 (337)
T ss_dssp --EEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEE
T ss_pred --EEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeee
Confidence 2333332 3456677886 7777777 6899999999999888887554 122233344554433332 22
Q ss_pred ------------------eEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeee
Q 011711 377 ------------------TIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGR 438 (479)
Q Consensus 377 ------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 438 (479)
.|.+||+.+++.. ........ .....+.++|+++ .++++ ++.|.+||+.+++....
T Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~--~~~~~~~~s~dg~-~l~~~--~~~v~~~d~~~~~~~~~ 275 (337)
T 1pby_B 202 FYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMD--VFYFSTAVNPAKT-RAFGA--YNVLESFDLEKNASIKR 275 (337)
T ss_dssp EEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECS--SCEEEEEECTTSS-EEEEE--ESEEEEEETTTTEEEEE
T ss_pred eeccccccccccccccccceEEEeCCCCCce-EeecCCCC--CceeeEEECCCCC-EEEEe--CCeEEEEECCCCcCcce
Confidence 5789999887654 22211111 1122344579998 45555 79999999999988888
Q ss_pred eeccCceEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 439 IFSRREVRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 439 ~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
+.....+.+++|+|+| +|++++.++.|.+||+.+++
T Consensus 276 ~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 276 VPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp EECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred ecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 8777789999999999 78888899999999997654
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.85 E-value=3.1e-19 Score=187.60 Aligned_cols=297 Identities=11% Similarity=0.000 Sum_probs=193.6
Q ss_pred CCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEeCCCCC
Q 011711 92 SPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECR 171 (479)
Q Consensus 92 ~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~d~ 171 (479)
.+.+++|||||+++++ +.||++++|+..+.
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g------------------------------------------------- 47 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETN------------------------------------------------- 47 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGC-------------------------------------------------
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCC-------------------------------------------------
Confidence 3588999999998877 55888888854322
Q ss_pred eEEEeecCCCceeeEEEecccc---cEEEEEeCCCCCEEEEEeCC---------CcEEEEECCCCceEEEEecC-C----
Q 011711 172 FWHSWFCGEGFTMLAKLEGHKK---AVSGIALPLRSDKLYSGSRD---------GTVQLWDCHTGQSASVINLG-A---- 234 (479)
Q Consensus 172 ~i~vw~~~~~~~~~~~~~~H~~---~V~~l~~s~~~~~l~s~s~D---------g~v~vwd~~~~~~~~~~~~~-~---- 234 (479)
+....+.+|.. .|.+++|+|||++|++++.+ +.|.+||+.+++.. .+... .
T Consensus 48 -----------~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~ 115 (723)
T 1xfd_A 48 -----------TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDPPEVSNAK 115 (723)
T ss_dssp -----------CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCCTTCCSCC
T ss_pred -----------cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE-eccCCcccccc
Confidence 12233344443 48899999999999999875 78889999998863 33221 1
Q ss_pred -ceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEec-CCCcc------------------EEEEEEcCC--EEEEEeCCC-
Q 011711 235 -EVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLD-GPVGE------------------VYSMVVANE--MLFAGAQDG- 291 (479)
Q Consensus 235 -~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~-~~~~~------------------v~~~~~~~~--~l~~g~~dg- 291 (479)
....++++|+.++.+.++.|.+|++.+++...+. .+... +.++.|+|+ .|++++.|+
T Consensus 116 ~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~ 195 (723)
T 1xfd_A 116 LQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDS 195 (723)
T ss_dssp CSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECT
T ss_pred ccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCC
Confidence 1234567999888888899999999988765443 22222 378999988 777776543
Q ss_pred ---------------------------------cEEEEEccCCCCCcccceeeecC------CCCCeEEEEEc--CCEEE
Q 011711 292 ---------------------------------NILVWKGIPNTQNPFQLAALLKG------HTRPVTCLAVG--GKRLY 330 (479)
Q Consensus 292 ---------------------------------~i~iwd~~~~~~~~~~~~~~~~~------h~~~i~~l~~~--~~~l~ 330 (479)
.|++||+.++.. ...+.. +...+.+++|+ +++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~ 270 (723)
T 1xfd_A 196 RVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH-----DLEMMPPDDPRMREYYITMVKWATSTKVAV 270 (723)
T ss_dssp TSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC-----CEECCCCCCGGGSSEEEEEEEESSSSEEEE
T ss_pred ccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce-----eEEeeCCccCCCccceeEEEEEeCCCeEEE
Confidence 789999877642 122333 36678899997 66776
Q ss_pred EEeC----CCeEEEEECCCCcEEEEEeCC-CCCcE----EEEEc--CCEEEE--EeCCC------eEEEEEcCCCcc---
Q 011711 331 SGSM----DNTIRVWDLDTLEAVMTLNGH-TDAPM----SLLCW--DQYLLS--CSLDN------TIKVWIMTEEGN--- 388 (479)
Q Consensus 331 sgs~----dg~I~iwd~~~~~~~~~~~~h-~~~v~----~~~~~--~~~l~s--~s~dg------~i~iwd~~~~~~--- 388 (479)
+.+. +..|++||+.+++....+..+ ...+. .+.|+ |+.|+. +..++ .|.+||+.....
T Consensus 271 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 350 (723)
T 1xfd_A 271 TWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDN 350 (723)
T ss_dssp EEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCC
T ss_pred EEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccc
Confidence 6543 367999999999887766433 33222 45555 665554 55677 566677323332
Q ss_pred eEEeccccCccceEEEeeeeCCCCCcEEEEEeCC--CeEEEeecCCCc--eeeeee----ccCceEEEEECCCc-eEEE
Q 011711 389 LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND--DSVHLYELPSFM--ERGRIF----SRREVRVIETGPDG-LFFT 458 (479)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d--g~v~iwd~~~~~--~~~~~~----~~~~v~~l~~s~~g-~l~s 458 (479)
...+....... .....++|+|+.+++++..+ +.+++|+++... ....+. +...+..++|+||| .|+.
T Consensus 351 ~~~l~~~~~~~---~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~ 426 (723)
T 1xfd_A 351 IQSITSGDWDV---TKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLL 426 (723)
T ss_dssp CCBSCCSSSCE---EEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEE
T ss_pred eeEeecCCeEE---EeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEE
Confidence 33333222221 11234579999555556555 889999986532 233333 34568899999999 5554
No 140
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.84 E-value=9.5e-19 Score=184.50 Aligned_cols=273 Identities=10% Similarity=-0.008 Sum_probs=196.7
Q ss_pred cccEEEEEeCCCCCEEEEEeC-CC-----cEEEEECCCCceEEEEecCC---------------------------ceeE
Q 011711 192 KKAVSGIALPLRSDKLYSGSR-DG-----TVQLWDCHTGQSASVINLGA---------------------------EVGS 238 (479)
Q Consensus 192 ~~~V~~l~~s~~~~~l~s~s~-Dg-----~v~vwd~~~~~~~~~~~~~~---------------------------~~~~ 238 (479)
...|.+++|+|||++|++++. |+ .|++||+.+++....+.... ....
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999999998 88 99999999998877765421 2234
Q ss_pred EEeCCCEEEEEcCCeEEEEEcCCC---ceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeec
Q 011711 239 LICEGPWVFVGMPNVVKAWHIESS---AEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLK 313 (479)
Q Consensus 239 ~~~~~~~l~~~~~~~i~v~~~~~~---~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 313 (479)
+.++|++++.+.++.|.+||+.++ ....+..+...+..++|+|+ .|+.++ ++.|++||+.++.. .....
T Consensus 116 ~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~-----~~~~~ 189 (741)
T 2ecf_A 116 WSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ-----MQLTA 189 (741)
T ss_dssp ECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-----EECCC
T ss_pred ECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-----EEecc
Confidence 556999998888899999999998 66677778888999999998 677766 56999999987542 22222
Q ss_pred CCCCC----------------eEEEEEc--CCEEEEEeCCC---------------------------------eEEEEE
Q 011711 314 GHTRP----------------VTCLAVG--GKRLYSGSMDN---------------------------------TIRVWD 342 (479)
Q Consensus 314 ~h~~~----------------i~~l~~~--~~~l~sgs~dg---------------------------------~I~iwd 342 (479)
.+... +.++.|+ |++|++++.|+ .|.+||
T Consensus 190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 22222 4678886 88888887765 899999
Q ss_pred CCC-CcEEEEEe--CCCCCcEEEEE-cCCEEEEEeC-----CCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCC
Q 011711 343 LDT-LEAVMTLN--GHTDAPMSLLC-WDQYLLSCSL-----DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGN 413 (479)
Q Consensus 343 ~~~-~~~~~~~~--~h~~~v~~~~~-~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (479)
+.+ ++...... .|...+..+.| ++++|++++. +..|++||+.+++....+..+............++|+|+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~ 349 (741)
T 2ecf_A 270 PAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS 349 (741)
T ss_dssp SSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC
T ss_pred CCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe
Confidence 998 87655443 35555555554 5778886654 578999999988765555443321000011234579999
Q ss_pred cEEEEEeCCCeEEEeecC-CCceeeeee-ccCceEEE-EECCCc-eE-EEEcCCC--cEEEEEecc
Q 011711 414 PVLICSCNDDSVHLYELP-SFMERGRIF-SRREVRVI-ETGPDG-LF-FTGDGTG--MLSVWKILA 472 (479)
Q Consensus 414 ~~l~s~~~dg~v~iwd~~-~~~~~~~~~-~~~~v~~l-~~s~~g-~l-~sg~~dg--~v~vw~~~~ 472 (479)
++++++.|+.++||.++ ++. ...+. +...+..+ .|+|+| .| ++++.++ .++||++..
T Consensus 350 -~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 350 -ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp -EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred -EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 88888899988888765 333 33343 35667777 599999 55 5666666 899999874
No 141
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.83 E-value=8.2e-19 Score=183.95 Aligned_cols=358 Identities=9% Similarity=-0.033 Sum_probs=216.5
Q ss_pred CCCCCCCCCceeccCCCCCCccccccccCCCC--CCCCCCcccccc-CcCCCCCeeeeeecCCCeEEEeccCCeeEeCCC
Q 011711 93 PPSYNCPKNNVRVSSGSEEGTTHVQNRENPDR--TVPNKSSLDCST-GSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDE 169 (479)
Q Consensus 93 i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~ 169 (479)
+.+++|. +++ +++++.|| | +||..+... ... ..+..... -+...+. ..........+++.+. ..++.+ .
T Consensus 28 ~~~~~w~-g~~-~~~~~~~~-i-~~d~~tg~~~~~~l-~~~~~~~~~l~~~~~~-~~~~~~~v~~~~~spd-~~~~~~-~ 99 (706)
T 2z3z_A 28 VVGLQWM-GDN-YVFIEGDD-L-VFNKANGKSAQTTR-FSAADLNALMPEGCKF-QTTDAFPSFRTLDAGR-GLVVLF-T 99 (706)
T ss_dssp CTTCEEE-TTE-EEEEETTE-E-EEEC-------CEE-EEHHHHHTTC------------CCCEEEEETTT-TEEEEE-E
T ss_pred CCCCcCc-CCe-EEEEeCCc-E-EEECCCCcEeeEEe-echhHhhhhccchhcc-ccccccCceeEEECCC-CeEEEE-E
Confidence 4678888 444 45555577 8 998776543 100 00000000 0000000 0111122345566666 555444 4
Q ss_pred CCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCC-----CceEEEEecCCc---------
Q 011711 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHT-----GQSASVINLGAE--------- 235 (479)
Q Consensus 170 d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~-----~~~~~~~~~~~~--------- 235 (479)
++.|++||+.++ +. ..+..|...+.+++|+|||++|+++ .|+.|++||+.+ ++..........
T Consensus 100 ~~~i~~~d~~~~-~~-~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 176 (706)
T 2z3z_A 100 QGGLVGFDMLAR-KV-TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH 176 (706)
T ss_dssp TTEEEEEETTTT-EE-EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCG
T ss_pred CCEEEEEECCCC-ce-EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchh
Confidence 599999999887 43 4455677889999999999999995 679999999998 776654433322
Q ss_pred --------eeEEEeCCCEEEEEc----------------------------------CCeEEEEEcCCCceEEec---CC
Q 011711 236 --------VGSLICEGPWVFVGM----------------------------------PNVVKAWHIESSAEFSLD---GP 270 (479)
Q Consensus 236 --------~~~~~~~~~~l~~~~----------------------------------~~~i~v~~~~~~~~~~~~---~~ 270 (479)
...+.++|+.|+.+. +..|.+||+.+++..... .+
T Consensus 177 ~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 256 (706)
T 2z3z_A 177 QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK 256 (706)
T ss_dssp GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence 234556888887653 357999999988765443 45
Q ss_pred CccEEEEEEcCC--EEEEEeCCC-----cEEEEEccCCCCCcccceeeecCCC---CCeEEEEE----cCCEEEEEeCCC
Q 011711 271 VGEVYSMVVANE--MLFAGAQDG-----NILVWKGIPNTQNPFQLAALLKGHT---RPVTCLAV----GGKRLYSGSMDN 336 (479)
Q Consensus 271 ~~~v~~~~~~~~--~l~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~h~---~~i~~l~~----~~~~l~sgs~dg 336 (479)
...+.+++|+++ .|++++.++ .|++||+.++.. ...+.. ..+. ..+.++.| +++++++++.|+
T Consensus 257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~--~~~~~~-~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF--VRTLFV-ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE--EEEEEE-EECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce--eeEEEE-ccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 677999999988 788877665 899999987621 111111 1122 12345566 567888899999
Q ss_pred eEEEEECC-CCcEEEEEeCCCCCcEE-EEEc--CCEEEEEeC-CC----eEEEEEcCCCcceEEeccccCccceEEEeee
Q 011711 337 TIRVWDLD-TLEAVMTLNGHTDAPMS-LLCW--DQYLLSCSL-DN----TIKVWIMTEEGNLEVAYTHNEDHGVLALGGL 407 (479)
Q Consensus 337 ~I~iwd~~-~~~~~~~~~~h~~~v~~-~~~~--~~~l~s~s~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (479)
.+++|+++ +++.+..+..+...+.. +.++ ++.|+.++. ++ .|..||+.++. ...+. +...+. ...
T Consensus 334 ~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~----~~~ 407 (706)
T 2z3z_A 334 WNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMH----RTQ 407 (706)
T ss_dssp SCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEE----EEE
T ss_pred ccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceE----EEE
Confidence 99999886 67778888888777766 5665 666655544 44 67777776654 33332 333332 345
Q ss_pred eCCCCCcEEEEEeCC---CeEEEeecCCCceeeeeeccCceEEEEECCCceEEEEcCCC--cEEEEEec
Q 011711 408 NDPDGNPVLICSCND---DSVHLYELPSFMERGRIFSRREVRVIETGPDGLFFTGDGTG--MLSVWKIL 471 (479)
Q Consensus 408 ~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g~l~sg~~dg--~v~vw~~~ 471 (479)
++|+|+.++++.+.+ +.|++||+.+++ ...+.+...+....+.+...+..-..|| .+..|-+.
T Consensus 408 ~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 475 (706)
T 2z3z_A 408 LSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLEAKNPDTGYAMPEIRTGTIMAADGQTPLYYKLTM 475 (706)
T ss_dssp ECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEEECC------CCCCEEEEEEECTTSSSEEEEEEEC
T ss_pred ECCCCCEEEEEecCCCCCcEEEEEECCCCe-EeeccccchhhhcCCCCcEEEEEEcCCCCEEEEEEEEe
Confidence 579999655555544 569999998877 4334444445555554444343444455 66666553
No 142
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.83 E-value=4.3e-18 Score=157.77 Aligned_cols=245 Identities=9% Similarity=-0.006 Sum_probs=176.7
Q ss_pred eCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCC-CceEEEEecC--Cce--eEEE
Q 011711 166 KGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHT-GQSASVINLG--AEV--GSLI 240 (479)
Q Consensus 166 ~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~-~~~~~~~~~~--~~~--~~~~ 240 (479)
+++.++.|++||+.++ +. ..+..|...|.+++|+|++++|++++ ++.|.+||+.+ ++........ ..+ ..+.
T Consensus 17 ~~~~~~~i~~~d~~~~-~~-~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR-KM-RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp -CCCCEEEEEEETTTT-EE-EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred CCCcceeEEEEeCCCC-ce-eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence 4677899999999887 43 35667999999999999999999987 78999999999 8776655443 233 3455
Q ss_pred eCCCEEEEEc-----CCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEE-EEeCCCcEEEEEccCCCCCcccceeee
Q 011711 241 CEGPWVFVGM-----PNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLF-AGAQDGNILVWKGIPNTQNPFQLAALL 312 (479)
Q Consensus 241 ~~~~~l~~~~-----~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~ 312 (479)
+++++++++. ...|..++..++....+..+. .+..+.|+++ .|+ ++..++.+.+|++..... ....+
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~----~~~~~ 168 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG----VETRL 168 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC----CEEEC
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCC----cceEc
Confidence 6888887764 245556666666655544433 4888999987 454 788899999999754332 23456
Q ss_pred cCCCCCeEEEEEc--CCEEEEEe-CCCeEEEEECC-CCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCC-----------
Q 011711 313 KGHTRPVTCLAVG--GKRLYSGS-MDNTIRVWDLD-TLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLD----------- 375 (479)
Q Consensus 313 ~~h~~~i~~l~~~--~~~l~sgs-~dg~I~iwd~~-~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~d----------- 375 (479)
..+...+.++.|+ ++.++.++ .++.+++|+++ .+..+..+..|...+..+.++ +++|++++.+
T Consensus 169 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 248 (297)
T 2ojh_A 169 THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLD 248 (297)
T ss_dssp CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEE
T ss_pred ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCc
Confidence 6788899999996 77777665 58999999986 566677888887778888876 6788887765
Q ss_pred CeEEEEEcCCCcceEEec--cccCccceEEEeeeeCCCCCcEEEEEeCC
Q 011711 376 NTIKVWIMTEEGNLEVAY--THNEDHGVLALGGLNDPDGNPVLICSCND 422 (479)
Q Consensus 376 g~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 422 (479)
+.|.+||+.+++...... .+...+..+ .++|+++.+++++..+
T Consensus 249 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~----~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 249 VRVQLMDMDGGNVETLFDLFGGQGTMNSP----NWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEETTSCSCEEEEEEEESTTTSCSC----CBCTTSSEEEEEEECC
T ss_pred eEEEEEecCCCCceeeeccCCCCcccccc----eECCCCCEEEEEEecc
Confidence 569999998776533332 344444443 4469999555555444
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.83 E-value=2.8e-17 Score=155.58 Aligned_cols=265 Identities=11% Similarity=0.107 Sum_probs=177.5
Q ss_pred EeCCCCCE-EEEEeCCCcEEEEECCCCceEEEEecCCceeEEE--eCCCEEEEE--cCCeEEEEEcCCCce-E-EecCCC
Q 011711 199 ALPLRSDK-LYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPWVFVG--MPNVVKAWHIESSAE-F-SLDGPV 271 (479)
Q Consensus 199 ~~s~~~~~-l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~--~~~~i~v~~~~~~~~-~-~~~~~~ 271 (479)
.|.+++++ +++++.++.|.+||+.+++....+..+.....+. +++++++++ .++.|.+||+.+++. . ....+.
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 83 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ 83 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence 45555554 7788889999999999999988877654332443 478755544 378999999998885 3 344444
Q ss_pred ccEEEEEEcCC--EEEEEeCCC---cEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEE-EEEeCCCe-EEEEE
Q 011711 272 GEVYSMVVANE--MLFAGAQDG---NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRL-YSGSMDNT-IRVWD 342 (479)
Q Consensus 272 ~~v~~~~~~~~--~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l-~sgs~dg~-I~iwd 342 (479)
....+++++++ +++++..++ .|.+||+.++.. ...+.. .....+++|+ ++++ ++...++. |.+|+
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~-----~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~ 157 (331)
T 3u4y_A 84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF-----ISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFK 157 (331)
T ss_dssp SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE-----EEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe-----EEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEE
Confidence 44444899887 677555553 899999987642 333433 3456889996 5544 45566688 99999
Q ss_pred CCCCcEE----EEEeCCCCCcEEEEEc--CCEEE-EEeCCCeEEEEEcCCCcc---eEEeccccCccceEEEeeeeCCCC
Q 011711 343 LDTLEAV----MTLNGHTDAPMSLLCW--DQYLL-SCSLDNTIKVWIMTEEGN---LEVAYTHNEDHGVLALGGLNDPDG 412 (479)
Q Consensus 343 ~~~~~~~----~~~~~h~~~v~~~~~~--~~~l~-s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 412 (479)
+.....+ .........+..+.++ +++++ ++..++.|.+||+.+++. +..+... .....+.+ +|+|
T Consensus 158 ~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~----spdg 232 (331)
T 3u4y_A 158 IDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVV----SRDG 232 (331)
T ss_dssp ECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEE----CTTS
T ss_pred ECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEE----CCCC
Confidence 8864433 1222334456777776 66555 455689999999998876 5444433 33333444 6999
Q ss_pred CcEEEEEeCCCeEEEeecCCCce--eeeeec--------cCceEEEEECCCc-eE-EEEcCCCcEEEEEeccCC
Q 011711 413 NPVLICSCNDDSVHLYELPSFME--RGRIFS--------RREVRVIETGPDG-LF-FTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 413 ~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~--------~~~v~~l~~s~~g-~l-~sg~~dg~v~vw~~~~~~ 474 (479)
+.++++...++.|.+||+.+++. +..+.. ......++|+|+| +| +++..++.|.+|++....
T Consensus 233 ~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 233 STVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp SEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred CEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 96666666688999999998876 322221 1223568999999 55 566677899999998754
No 144
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.82 E-value=6.5e-18 Score=160.41 Aligned_cols=295 Identities=13% Similarity=0.124 Sum_probs=179.3
Q ss_pred CceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEeCCCC-CeEEEeecC
Q 011711 101 NNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDEC-RFWHSWFCG 179 (479)
Q Consensus 101 ~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~d-~~i~vw~~~ 179 (479)
+...+++++.||.+++|+....... ... ...........+++.+.+..+++++.+ +.|.+|++.
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~----~~~-----------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~ 68 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGAL----TLT-----------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 68 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCE----EEE-----------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcE----EEe-----------eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEec
Confidence 3444555577999999987532110 000 001112234567788888777766655 999999997
Q ss_pred --CC-ceeeEEEecccccEEEEEeCCCCCEEEEEeC-CCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEE
Q 011711 180 --EG-FTMLAKLEGHKKAVSGIALPLRSDKLYSGSR-DGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVK 255 (479)
Q Consensus 180 --~~-~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~-Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 255 (479)
++ .+.+..+..+. .+..++|+|++++|++++. ++.|.+||+..+.......
T Consensus 69 ~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~------------------------ 123 (343)
T 1ri6_A 69 PDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD------------------------ 123 (343)
T ss_dssp TTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEE------------------------
T ss_pred CCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccc------------------------
Confidence 44 23455666554 8899999999998877665 8899999985332211111
Q ss_pred EEEcCCCceEEecCCCccEEEEEEcCC--EEEEEe-CCCcEEEEEccCCCCCccccee--eec-CCCCCeEEEEEc--CC
Q 011711 256 AWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGA-QDGNILVWKGIPNTQNPFQLAA--LLK-GHTRPVTCLAVG--GK 327 (479)
Q Consensus 256 v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~-~dg~i~iwd~~~~~~~~~~~~~--~~~-~h~~~i~~l~~~--~~ 327 (479)
.......+.+++|+++ .+++++ .++.|.+||+.+... ..... ... .....+.+++|+ ++
T Consensus 124 -----------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~pdg~ 190 (343)
T 1ri6_A 124 -----------VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH--LVAQDPAEVTTVEGAGPRHMVFHPNEQ 190 (343)
T ss_dssp -----------EECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC--EEEEEEEEEECSTTCCEEEEEECTTSS
T ss_pred -----------cccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc--eeeecccccccCCCCCcceEEECCCCC
Confidence 0112234677888877 667666 899999999976221 11111 222 234578889996 67
Q ss_pred EEEEE-eCCCeEEEEECCC--CcE--EEEEeC---C---CCCcEEEEEc--CCEEE-EEeCCCeEEEEEcCC--C--cce
Q 011711 328 RLYSG-SMDNTIRVWDLDT--LEA--VMTLNG---H---TDAPMSLLCW--DQYLL-SCSLDNTIKVWIMTE--E--GNL 389 (479)
Q Consensus 328 ~l~sg-s~dg~I~iwd~~~--~~~--~~~~~~---h---~~~v~~~~~~--~~~l~-s~s~dg~i~iwd~~~--~--~~~ 389 (479)
+++++ ..++.|.+||++. ++. ...+.. . ...+..+.++ +++|+ +...++.|.+||+.. + ..+
T Consensus 191 ~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~ 270 (343)
T 1ri6_A 191 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE 270 (343)
T ss_dssp EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEe
Confidence 66554 4899999999953 433 333331 1 1234567776 66776 555799999999983 2 222
Q ss_pred EEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC--CCc--eeeeeeccCceEEEEECCC
Q 011711 390 EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP--SFM--ERGRIFSRREVRVIETGPD 453 (479)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~~--~~~~~~~~~~v~~l~~s~~ 453 (479)
..+.... ....+. ++|+|+.+++++..++.|.+|+++ +++ .+..+.......+++|.|+
T Consensus 271 ~~~~~~~-~~~~~~----~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~ 333 (343)
T 1ri6_A 271 GFQPTET-QPRGFN----VDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH 333 (343)
T ss_dssp EEEECSS-SCCCEE----ECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEE
T ss_pred eeecCCC-ccceEE----ECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEEcc
Confidence 2222222 233344 469998555544478999999554 543 3333334455667777654
No 145
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.80 E-value=1.1e-16 Score=152.63 Aligned_cols=267 Identities=12% Similarity=0.107 Sum_probs=168.5
Q ss_pred CCCCeEEEeecCC--CceeeEEEecccccEEEEEeCCCCCEEEEEeC---CCcEEEEECCCCceEEEEecCCceeEEEeC
Q 011711 168 DECRFWHSWFCGE--GFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR---DGTVQLWDCHTGQSASVINLGAEVGSLICE 242 (479)
Q Consensus 168 ~~d~~i~vw~~~~--~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~---Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 242 (479)
+.++.|.+|.++. +.........+...+..++|+|+|+ |++++. ++.|.+||+.+++.....
T Consensus 13 ~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~------------ 79 (347)
T 3hfq_A 13 KTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN------------ 79 (347)
T ss_dssp SSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEE------------
T ss_pred CCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEee------------
Confidence 4456788887754 4212223445667788999999999 665554 689999999766532211
Q ss_pred CCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEe-CCCcEEEEEccCCCCCcccceeeecC-----
Q 011711 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGA-QDGNILVWKGIPNTQNPFQLAALLKG----- 314 (479)
Q Consensus 243 ~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~----- 314 (479)
....+...+..++++++ .|++++ .++.|.+|++..... ......+..
T Consensus 80 -----------------------~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~--~~~~~~~~~~~~~p 134 (347)
T 3hfq_A 80 -----------------------TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGA--LTLTDTVQHSGHGP 134 (347)
T ss_dssp -----------------------EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSC--EEEEEEEECCCCCS
T ss_pred -----------------------eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCC--eeecceeecCCCCC
Confidence 01123345567788877 677766 678999999864321 122222211
Q ss_pred ----CCCCeEEEEEc--CCEEEEEeCCCeEEEEECC-CCcEE--EEEeCCC-CCcEEEEEc--CCEEEE-EeCCCeEEEE
Q 011711 315 ----HTRPVTCLAVG--GKRLYSGSMDNTIRVWDLD-TLEAV--MTLNGHT-DAPMSLLCW--DQYLLS-CSLDNTIKVW 381 (479)
Q Consensus 315 ----h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~-~~~~~--~~~~~h~-~~v~~~~~~--~~~l~s-~s~dg~i~iw 381 (479)
+...+.+++++ ++++++...++.|.+||+. +++.. ..+..+. ..+..+.++ ++++++ ...++.|.+|
T Consensus 135 ~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~ 214 (347)
T 3hfq_A 135 RPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASL 214 (347)
T ss_dssp STTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEE
Confidence 22358889996 6766666678999999998 55443 2233332 246667776 675555 5668999999
Q ss_pred EcCCC-cceE---EeccccCc--cceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCC---ceeeeeec-cCceEEEEEC
Q 011711 382 IMTEE-GNLE---VAYTHNED--HGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSF---MERGRIFS-RREVRVIETG 451 (479)
Q Consensus 382 d~~~~-~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~-~~~v~~l~~s 451 (479)
++... ..+. ........ .......+.++|+|+.++++...++.|.+|++... +.+..+.. ...+..++|+
T Consensus 215 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~s 294 (347)
T 3hfq_A 215 KYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLD 294 (347)
T ss_dssp EEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEEC
T ss_pred EecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEEC
Confidence 98752 2221 11111111 01223344567999966677778999999999732 33444433 4568999999
Q ss_pred CCc-eEEEEc-CCCcEEEEEecc
Q 011711 452 PDG-LFFTGD-GTGMLSVWKILA 472 (479)
Q Consensus 452 ~~g-~l~sg~-~dg~v~vw~~~~ 472 (479)
||| +|++++ .++.|.+|+++.
T Consensus 295 pdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 295 PTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp TTSSEEEEEETTTTEEEEEEECT
T ss_pred CCCCEEEEEEcCCCcEEEEEEeC
Confidence 999 666655 459999997754
No 146
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=3.6e-17 Score=155.74 Aligned_cols=256 Identities=13% Similarity=0.113 Sum_probs=174.9
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC--ceeE--EEeCCCEEEEE--cCCeEEEEEcCCCceEE-ecC
Q 011711 197 GIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA--EVGS--LICEGPWVFVG--MPNVVKAWHIESSAEFS-LDG 269 (479)
Q Consensus 197 ~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~--~~~~--~~~~~~~l~~~--~~~~i~v~~~~~~~~~~-~~~ 269 (479)
.+++++++.++++++.+++|.+||+.+++.+..+..+. .... +.++++.++++ .++.|.+||+.+++... ...
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45788899999999999999999999999988887665 3433 34577765543 57899999999887653 222
Q ss_pred C------CccEEEEEEcCC--EEEEEeCC------------CcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CC
Q 011711 270 P------VGEVYSMVVANE--MLFAGAQD------------GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GK 327 (479)
Q Consensus 270 ~------~~~v~~~~~~~~--~l~~g~~d------------g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~ 327 (479)
. ...+..++++++ .+++++.+ +.|.+||+.++.. .+...... +...+.+++++ ++
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~-~~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE--AKPVRTFP-MPRQVYLMRAADDGS 160 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG--BCCSEEEE-CCSSCCCEEECTTSC
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc--cceeeecc-CCCcccceeECCCCc
Confidence 2 223678899887 77777755 8999999987532 12223333 33357888886 66
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEEeCCCC------------------------CcEEEEEcC-------------CEEE
Q 011711 328 RLYSGSMDNTIRVWDLDTLEAVMTLNGHTD------------------------APMSLLCWD-------------QYLL 370 (479)
Q Consensus 328 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~------------------------~v~~~~~~~-------------~~l~ 370 (479)
+++++. .|.+||+.+++.+..+..+.. ....+.+.. .++.
T Consensus 161 -l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 237 (349)
T 1jmx_B 161 -LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS 237 (349)
T ss_dssp -EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred -EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEE
Confidence 666543 499999999998888764420 011122210 0111
Q ss_pred EEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCC-CCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEE
Q 011711 371 SCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDP-DGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIE 449 (479)
Q Consensus 371 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~ 449 (479)
....++.+++|++.. .. .......++| +++ +++++ ++.|.+||+.+++....+.....+..++
T Consensus 238 ~~~~~~~~~~~~~~~---------~~----~~~~~~~~sp~dg~-~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 301 (349)
T 1jmx_B 238 VDLKTGKTHTQEFAD---------LT----ELYFTGLRSPKDPN-QIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVA 301 (349)
T ss_dssp EETTTCCEEEEEEEE---------CS----SCEEEEEECSSCTT-EEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEE
T ss_pred EeccCCcEEeccccc---------CC----CcceeeEecCCCCC-EEEEE--cCeEEEEECccCeEEEEEcCCCCccceE
Confidence 222233444443311 11 1233444579 888 55555 8899999999999888887777789999
Q ss_pred ECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 450 TGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 450 ~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
|+|+| .|++++.++.|.+||+.+.+
T Consensus 302 ~s~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 302 FDKKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp ECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred ECCCCCEEEEecCCCeEEEEeccccc
Confidence 99999 77778889999999997653
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.79 E-value=2.5e-16 Score=150.15 Aligned_cols=256 Identities=9% Similarity=0.003 Sum_probs=182.6
Q ss_pred CeEEEeccCCeeEeCCC-------CCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEE-EEeCCCcEEEEECCCC
Q 011711 153 KNVCYHWLSGNCVKGDE-------CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLY-SGSRDGTVQLWDCHTG 224 (479)
Q Consensus 153 ~~~c~~~~~~~~~~g~~-------d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~-s~s~Dg~v~vwd~~~~ 224 (479)
..+++.+.+..+..++. ++.|.+||..++ +.+..+.. ...+..++|+|++++++ +...++.|.+||..++
T Consensus 44 ~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 121 (353)
T 3vgz_A 44 YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL-EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTG 121 (353)
T ss_dssp EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC-CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTC
T ss_pred cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC-eEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCC
Confidence 35666776665554432 679999999988 66776654 34578899999999655 4555799999999999
Q ss_pred ceEEEEecCCc----------e--eEEEeCCCEEEEEc---CCeEEEEEcCCCceEEecC-CCccEEEEEEcCC--EEEE
Q 011711 225 QSASVINLGAE----------V--GSLICEGPWVFVGM---PNVVKAWHIESSAEFSLDG-PVGEVYSMVVANE--MLFA 286 (479)
Q Consensus 225 ~~~~~~~~~~~----------~--~~~~~~~~~l~~~~---~~~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~--~l~~ 286 (479)
+.+..+..+.. . ..+.++++.++++. ++.|.+||..+++...... +...+..++++++ .+++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 201 (353)
T 3vgz_A 122 EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYT 201 (353)
T ss_dssp CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEE
T ss_pred eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEE
Confidence 99888876431 2 24445788766553 7889999999988765443 5556788889877 8888
Q ss_pred EeCCCcEEEEEccCCCCCcccceeeec----CCCCCeEEEEEc--CCEEEEEeC-CCeEEEEECCCCcEEEEEeCCCCCc
Q 011711 287 GAQDGNILVWKGIPNTQNPFQLAALLK----GHTRPVTCLAVG--GKRLYSGSM-DNTIRVWDLDTLEAVMTLNGHTDAP 359 (479)
Q Consensus 287 g~~dg~i~iwd~~~~~~~~~~~~~~~~----~h~~~i~~l~~~--~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~h~~~v 359 (479)
+..++.|.+||+.++.. ...+. ++...+.+++++ ++++++++. ++.|.+||+.+++.+..+......-
T Consensus 202 ~~~~~~i~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 276 (353)
T 3vgz_A 202 TNADGELITIDTADNKI-----LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLA 276 (353)
T ss_dssp ECTTSEEEEEETTTTEE-----EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCC
T ss_pred EcCCCeEEEEECCCCeE-----EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCce
Confidence 99999999999887643 22222 255567888886 776666654 5999999999999998887655433
Q ss_pred EEEEEcCCEEEEEe-CCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEe
Q 011711 360 MSLLCWDQYLLSCS-LDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC 420 (479)
Q Consensus 360 ~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 420 (479)
..+..++++++.+. .++.|.+||..+.+.+..+.... . ...+.++|+|+.++++..
T Consensus 277 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~----~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 277 VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-H----PNSLALSADGKTLYVSVK 333 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-E----EEEEEECTTSCEEEEEEE
T ss_pred EEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-C----CCeEEEcCCCCEEEEEEc
Confidence 33444477655555 69999999998887665554332 2 233445799985555543
No 148
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.79 E-value=8e-18 Score=176.89 Aligned_cols=273 Identities=10% Similarity=0.039 Sum_probs=187.4
Q ss_pred cEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCc----ee--EEEeCCCEEEEEcC----------CeEEEE
Q 011711 194 AVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE----VG--SLICEGPWVFVGMP----------NVVKAW 257 (479)
Q Consensus 194 ~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~----~~--~~~~~~~~l~~~~~----------~~i~v~ 257 (479)
.+.+++|+|||+++++ +.||+|++||+.+++....+..... +. .++++|++++.+.+ +.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678899999998877 7899999999999998877765432 33 45568998877643 789999
Q ss_pred EcCCCceEEec---CCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCC--------------
Q 011711 258 HIESSAEFSLD---GPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP-------------- 318 (479)
Q Consensus 258 ~~~~~~~~~~~---~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~-------------- 318 (479)
|+.+++...+. .+...+..++|+|+ .|+.++. +.|++||+.++.. ......+...
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-----~~~~~~~~~~~~~~g~~~~v~~ee 170 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-----IRVVSTGKEGVIYNGLSDWLYEEE 170 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-----EEEECCCBTTTEEEEECCHHHHHT
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-----EEEecCCCCCceECcccceeEEEE
Confidence 99998864443 33445888999988 7777765 7999999987643 2223333332
Q ss_pred ----eEEEEEc--CCEEEEEeCCC----------------------------------eEEEEECCCCcEEEEEeCC---
Q 011711 319 ----VTCLAVG--GKRLYSGSMDN----------------------------------TIRVWDLDTLEAVMTLNGH--- 355 (479)
Q Consensus 319 ----i~~l~~~--~~~l~sgs~dg----------------------------------~I~iwd~~~~~~~~~~~~h--- 355 (479)
+.++.|+ |+.|++++.|+ .|++||+.+++....+..+
T Consensus 171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 250 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP 250 (723)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG
T ss_pred eccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC
Confidence 3788996 88888887553 7999999998876667654
Q ss_pred ---CCCcEEEEEc--CCEEEEEeC----CCeEEEEEcCCCcceEEecccc-CccceEEEeeeeCCCCCcEEEE-EeCCC-
Q 011711 356 ---TDAPMSLLCW--DQYLLSCSL----DNTIKVWIMTEEGNLEVAYTHN-EDHGVLALGGLNDPDGNPVLIC-SCNDD- 423 (479)
Q Consensus 356 ---~~~v~~~~~~--~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s-~~~dg- 423 (479)
...+..+.++ ++++++.+. +..|++||+.+++.......+. ..+........|+|+|+.+++. +..++
T Consensus 251 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 330 (723)
T 1xfd_A 251 RMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG 330 (723)
T ss_dssp GGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSS
T ss_pred CCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCC
Confidence 4557778877 667766643 3579999998877555443322 2111000133457999976665 56777
Q ss_pred -----eEEEee-cCCCce--eeeee-ccCceEE-EEECCCc-eEE-EEcCC--CcEEEEEeccC
Q 011711 424 -----SVHLYE-LPSFME--RGRIF-SRREVRV-IETGPDG-LFF-TGDGT--GMLSVWKILAK 473 (479)
Q Consensus 424 -----~v~iwd-~~~~~~--~~~~~-~~~~v~~-l~~s~~g-~l~-sg~~d--g~v~vw~~~~~ 473 (479)
.|.+|| ..+++. ...+. +...+.. ++|+||| .|+ ++..+ +.+++|++...
T Consensus 331 ~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 331 RGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp SSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred CcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 566777 344441 33443 2344554 6999999 665 44445 89999998754
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.79 E-value=2.9e-17 Score=152.16 Aligned_cols=244 Identities=11% Similarity=0.118 Sum_probs=170.8
Q ss_pred EEeCCCcEEEEECCCCceEEEEecCCceeEEE--eCCCEEEEEcCCeEEEEEcCC-CceEEec-CC-CccEEEEEEcCC-
Q 011711 209 SGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPWVFVGMPNVVKAWHIES-SAEFSLD-GP-VGEVYSMVVANE- 282 (479)
Q Consensus 209 s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~i~v~~~~~-~~~~~~~-~~-~~~v~~~~~~~~- 282 (479)
+++.|++|++||+.+++......+...+.++. +++++++++.++.|.+||+.+ ++..... .+ ...+.+++|+++
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence 34678999999999998887777766666555 488999999999999999998 7665443 33 367888999988
Q ss_pred -EEEEEe--CCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEE-EEeCCCeEEEEECCC-CcEEEEEeCC
Q 011711 283 -MLFAGA--QDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLY-SGSMDNTIRVWDLDT-LEAVMTLNGH 355 (479)
Q Consensus 283 -~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~-sgs~dg~I~iwd~~~-~~~~~~~~~h 355 (479)
.|++++ .++...+|.+...... ...+..+ ..+.+++|+ ++.++ +++.|+.+++|+++. ......+..+
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 171 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPSTGGT----PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG 171 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEETTCCC----CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS
T ss_pred CEEEEEEeCCCCcceEEEEECCCCc----eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC
Confidence 788887 4455666655432211 2333333 348888896 67666 788899999998632 2344666777
Q ss_pred CCCcEEEEEc--CCEEEEEe-CCCeEEEEEcC-CCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCC---------
Q 011711 356 TDAPMSLLCW--DQYLLSCS-LDNTIKVWIMT-EEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND--------- 422 (479)
Q Consensus 356 ~~~v~~~~~~--~~~l~s~s-~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d--------- 422 (479)
...+.++.++ +++|+.++ .++.+++|++. .......+..+... .....++|+++ .|+.++.+
T Consensus 172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~s~dg~-~l~~~~~~~~~~~~~~~ 246 (297)
T 2ojh_A 172 EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYG----DWFPHPSPSGD-KVVFVSYDADVFDHPRD 246 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEE----EEEEEECTTSS-EEEEEEEETTCCSCCSS
T ss_pred CCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcc----cCCeEECCCCC-EEEEEEcCCCCCccccc
Confidence 7888888887 67777665 58999999986 44455555444332 33445679999 45444444
Q ss_pred --CeEEEeecCCCceeeee---eccCceEEEEECCCc-eEEEEcCC
Q 011711 423 --DSVHLYELPSFMERGRI---FSRREVRVIETGPDG-LFFTGDGT 462 (479)
Q Consensus 423 --g~v~iwd~~~~~~~~~~---~~~~~v~~l~~s~~g-~l~sg~~d 462 (479)
+.|.+||+.+++..... .+...+..++|+|++ .|++++.+
T Consensus 247 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 247 LDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp EEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred CceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 56999999887653333 346789999999999 67666554
No 150
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.79 E-value=3.7e-17 Score=160.67 Aligned_cols=193 Identities=16% Similarity=0.118 Sum_probs=142.0
Q ss_pred CeEEEeccCCeeEeCCCCCeEEEeecCCCce---------eeE-----EEecccccEEEEEeCCCCCEEE----EEeCCC
Q 011711 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFT---------MLA-----KLEGHKKAVSGIALPLRSDKLY----SGSRDG 214 (479)
Q Consensus 153 ~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~---------~~~-----~~~~H~~~V~~l~~s~~~~~l~----s~s~Dg 214 (479)
..++..+..+.+++++.++ +++|+...-.. .+. ..-.|...|.+++|+|++++|+ +++.|+
T Consensus 40 n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~ 118 (434)
T 2oit_A 40 SLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGS 118 (434)
T ss_dssp BCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEE
T ss_pred cEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCc
Confidence 4666677777888888777 88887642100 011 1123567899999999999999 888999
Q ss_pred cEEEEECCCC--------ceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---E
Q 011711 215 TVQLWDCHTG--------QSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---M 283 (479)
Q Consensus 215 ~v~vwd~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~ 283 (479)
+|+|||+.++ +.+..+ ....+|...|.+++|+++ +
T Consensus 119 ~v~iwd~~~~~~~~~~~~~~~~~~----------------------------------~~~~~h~~~V~~v~~~p~~~~~ 164 (434)
T 2oit_A 119 IIAFFDVRTFSNEAKQQKRPFAYH----------------------------------KLLKDAGGMVIDMKWNPTVPSM 164 (434)
T ss_dssp EEEEEEHHHHHCTTCSSCCCSEEE----------------------------------ECCCSGGGSEEEEEECSSCTTE
T ss_pred eEEEEEccccccCCcCCcceeeee----------------------------------eccCCCCCceEEEEECCCCCCE
Confidence 9999998654 111111 123468899999999975 8
Q ss_pred EEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCC----
Q 011711 284 LFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD---- 357 (479)
Q Consensus 284 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~---- 357 (479)
|++++.||+|++||++++. ......+|...|.+++|+ +++|++|+.||+|++||++ ++....+..|..
T Consensus 165 las~s~Dg~v~iwD~~~~~-----~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~ 238 (434)
T 2oit_A 165 VAVCLADGSIAVLQVTETV-----KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESD 238 (434)
T ss_dssp EEEEETTSCEEEEEESSSE-----EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTT
T ss_pred EEEEECCCeEEEEEcCCCc-----ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCC
Confidence 9999999999999998763 234456789999999997 8999999999999999998 666676655432
Q ss_pred ---CcEEEEEcC--CEEEE-EeCCC------eEEEEEcCCC
Q 011711 358 ---APMSLLCWD--QYLLS-CSLDN------TIKVWIMTEE 386 (479)
Q Consensus 358 ---~v~~~~~~~--~~l~s-~s~dg------~i~iwd~~~~ 386 (479)
.+.++.|.+ .++++ ...|| .+++|++...
T Consensus 239 ~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 239 HPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp SCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 678888883 33332 33443 3899999865
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.79 E-value=2.2e-17 Score=162.30 Aligned_cols=231 Identities=17% Similarity=0.064 Sum_probs=158.5
Q ss_pred CeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEc
Q 011711 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGM 250 (479)
Q Consensus 171 ~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (479)
+.+++|+.... .+...+..+++++++.++++++.|+ +++|+....... .......
T Consensus 23 ~~vri~~~~~~--------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~--~~~~~~~-------------- 77 (434)
T 2oit_A 23 KKVRIFDSPEE--------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ--NKPGDDP-------------- 77 (434)
T ss_dssp CEEECSCCCSS--------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC--CCTTCCT--------------
T ss_pred eeEEecCCccc--------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh--cccccCc--------------
Confidence 56788765321 1345688899999999999999988 999886422110 0000000
Q ss_pred CCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEE----EEeCCCcEEEEEccCC-----CC-CcccceeeecCCCCC
Q 011711 251 PNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLF----AGAQDGNILVWKGIPN-----TQ-NPFQLAALLKGHTRP 318 (479)
Q Consensus 251 ~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~----~g~~dg~i~iwd~~~~-----~~-~~~~~~~~~~~h~~~ 318 (479)
..+...... ....+...|.+++|+++ +|+ +|+.|+.|++||+.+. .. .+......+.+|...
T Consensus 78 ---~~~~~~~~~---~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~ 151 (434)
T 2oit_A 78 ---NKIVDKVQG---LLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGM 151 (434)
T ss_dssp ---TCEEECCCC---EEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGS
T ss_pred ---ccccccCcc---ccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCc
Confidence 000000000 11235678999999987 777 6788999999998764 11 112234566789999
Q ss_pred eEEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEec
Q 011711 319 VTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAY 393 (479)
Q Consensus 319 i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 393 (479)
|.+++|+ +++|++++.||+|++||+++++.+....+|...+.+++|+ +++|++|+.||.|++||++ +.....+.
T Consensus 152 V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~ 230 (434)
T 2oit_A 152 VIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIP 230 (434)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEEC
T ss_pred eEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccccccc
Confidence 9999996 6789999999999999999998887788899999999998 7899999999999999998 44444443
Q ss_pred cccC---ccceEEEeeeeCCCCCcEEEEEeCCCe------EEEeecCCC
Q 011711 394 THNE---DHGVLALGGLNDPDGNPVLICSCNDDS------VHLYELPSF 433 (479)
Q Consensus 394 ~~~~---~~~~~~~~~~~~~~~~~~l~s~~~dg~------v~iwd~~~~ 433 (479)
.+.. .......++.|++++..+++....||. +++|++...
T Consensus 231 ~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 231 CPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 3322 112244555566777644444555543 899999764
No 152
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.78 E-value=3.3e-17 Score=155.11 Aligned_cols=266 Identities=10% Similarity=-0.020 Sum_probs=186.0
Q ss_pred eeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeec---CCCeEEEeccCCe-eEeCCCCCeEEEeec
Q 011711 103 VRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERT---TPKNVCYHWLSGN-CVKGDECRFWHSWFC 178 (479)
Q Consensus 103 ~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~c~~~~~~~-~~~g~~d~~i~vw~~ 178 (479)
.++++++.|+++++||..+.... . ...... .+..+++.+.+.. ++++..++.|.+||+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~----~--------------~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 63 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVD----K--------------VITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEE----E--------------EEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred cEEEEcCCCCeEEEEECCCCcEE----E--------------EEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEEC
Confidence 46888888999999986543210 0 000011 2356777777765 466777899999999
Q ss_pred CCCceeeEEEec-----ccccEEEEEeCCCCCEEEEEe------------CCCcEEEEECCCCceEEEEecCCceeE--E
Q 011711 179 GEGFTMLAKLEG-----HKKAVSGIALPLRSDKLYSGS------------RDGTVQLWDCHTGQSASVINLGAEVGS--L 239 (479)
Q Consensus 179 ~~~~~~~~~~~~-----H~~~V~~l~~s~~~~~l~s~s------------~Dg~v~vwd~~~~~~~~~~~~~~~~~~--~ 239 (479)
.++ +.+..+.. |...+.+++|+|++++|++++ .++.|.+||+.+++....+........ +
T Consensus 64 ~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 142 (337)
T 1pby_B 64 VTG-ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAW 142 (337)
T ss_dssp TTC-CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEE
T ss_pred CCC-CeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEE
Confidence 887 56665553 233678899999999999886 579999999999998888876655444 4
Q ss_pred EeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEe-CCC-----------------------cE
Q 011711 240 ICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGA-QDG-----------------------NI 293 (479)
Q Consensus 240 ~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~-~dg-----------------------~i 293 (479)
.+++++++++ ++.|.+||+.+++.............+.++++ .+++.+ .++ .|
T Consensus 143 s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 221 (337)
T 1pby_B 143 ARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221 (337)
T ss_dssp CTTSSCEEEE-SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred CCCCCEEEEe-CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccce
Confidence 4578877777 78999999998876532211110001134444 333322 222 46
Q ss_pred EEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEE
Q 011711 294 LVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYL 369 (479)
Q Consensus 294 ~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l 369 (479)
.+||+.++.. . ...+..+...+.+++++ +++++++ ++.|.+||+.+++.+..+..+ ..+.++.++ +++|
T Consensus 222 ~~~d~~~~~~---~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l 294 (337)
T 1pby_B 222 LTMDLETGEM---A-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTV 294 (337)
T ss_dssp EEEETTTCCE---E-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEE
T ss_pred EEEeCCCCCc---e-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEE
Confidence 8999887653 1 33345566778889996 7788887 799999999999988888754 346677776 7788
Q ss_pred EEEeCCCeEEEEEcCCCcceEEeccc
Q 011711 370 LSCSLDNTIKVWIMTEEGNLEVAYTH 395 (479)
Q Consensus 370 ~s~s~dg~i~iwd~~~~~~~~~~~~~ 395 (479)
++++.++.|.+||+.+.+.+..+...
T Consensus 295 ~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 295 WLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEESBSSEEEEEETTTCCEEEEEECG
T ss_pred EEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 88899999999999988776665543
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.77 E-value=9.7e-18 Score=176.15 Aligned_cols=311 Identities=10% Similarity=0.034 Sum_probs=199.8
Q ss_pred EEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccc---cEEEEEeCCCCCEEEEEeC---------CCcEEEEECCC
Q 011711 156 CYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKK---AVSGIALPLRSDKLYSGSR---------DGTVQLWDCHT 223 (479)
Q Consensus 156 c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~---~V~~l~~s~~~~~l~s~s~---------Dg~v~vwd~~~ 223 (479)
.+.+.+ .++..+.|+.|++||+.++ +....+.+|.. .|.+++|||||++|++++. |+.|++||+.+
T Consensus 22 ~~s~dg-~~~~~~~d~~i~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 22 NWISGQ-EYLHQSADNNIVLYNIETG-QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp EESSSS-EEEEECTTSCEEEEESSSC-CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred EECCCC-eEEEEcCCCCEEEEEcCCC-cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 344444 4454556899999999988 66666666655 4999999999999999876 78999999999
Q ss_pred CceE--EEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEec--CCCccE-----------------EEEEEcCC
Q 011711 224 GQSA--SVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLD--GPVGEV-----------------YSMVVANE 282 (479)
Q Consensus 224 ~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~--~~~~~v-----------------~~~~~~~~ 282 (479)
++.+ ..+........++++|+.|+.+.++.|++|++.+++...+. ++...+ .++.|+|+
T Consensus 100 g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPD 179 (719)
T 1z68_A 100 GEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPN 179 (719)
T ss_dssp TEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTT
T ss_pred CccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCC
Confidence 8763 12222222345667999999888999999999888765432 222222 48999998
Q ss_pred --EEEEEeCCC----------------------------------cEEEEEccCCCCC---cccceeeecCCCCCeEEEE
Q 011711 283 --MLFAGAQDG----------------------------------NILVWKGIPNTQN---PFQLAALLKGHTRPVTCLA 323 (479)
Q Consensus 283 --~l~~g~~dg----------------------------------~i~iwd~~~~~~~---~~~~~~~~~~h~~~i~~l~ 323 (479)
.|++++.|. .|++||+.++... .......+.+|...+.+++
T Consensus 180 G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (719)
T 1z68_A 180 GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLT 259 (719)
T ss_dssp SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEE
T ss_pred CCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeE
Confidence 787776542 7889998765320 0000022446888899999
Q ss_pred Ec--CCEEEEEeCC----CeEEEEE----CCCCcEEEEE----eCCCCCcE-----EEEEc--CCEEE--EEeCCC--eE
Q 011711 324 VG--GKRLYSGSMD----NTIRVWD----LDTLEAVMTL----NGHTDAPM-----SLLCW--DQYLL--SCSLDN--TI 378 (479)
Q Consensus 324 ~~--~~~l~sgs~d----g~I~iwd----~~~~~~~~~~----~~h~~~v~-----~~~~~--~~~l~--s~s~dg--~i 378 (479)
|+ +.++++.... ..|.+|| +.++++...+ ..|...+. .+.++ ++.++ +...+| .|
T Consensus 260 ~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l 339 (719)
T 1z68_A 260 WVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHI 339 (719)
T ss_dssp ESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEE
T ss_pred EeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEE
Confidence 97 5555554322 2488999 8887765444 45666554 55565 66443 344555 56
Q ss_pred EEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeC----CCeEEEeecCC--Cc-eeeeee-----ccCceE
Q 011711 379 KVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCN----DDSVHLYELPS--FM-ERGRIF-----SRREVR 446 (479)
Q Consensus 379 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----dg~v~iwd~~~--~~-~~~~~~-----~~~~v~ 446 (479)
.+||+.++. ...+......+... .++ +++.+++++.. ++.+++|.++. +. ....+. +...+.
T Consensus 340 ~~~~~~~~~-~~~lt~~~~~v~~~----~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~ 413 (719)
T 1z68_A 340 HYIKDTVEN-AIQITSGKWEAINI----FRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYY 413 (719)
T ss_dssp EEESSCSTT-CEECSCSSSCEEEE----EEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBE
T ss_pred EEEECCCCc-eEecccCceEEEEE----EEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceE
Confidence 667776554 33333332222222 223 66656666655 58889998764 32 122222 235678
Q ss_pred EEEECCCc-eE-EEEcCC--CcEEEEEeccCC
Q 011711 447 VIETGPDG-LF-FTGDGT--GMLSVWKILAKP 474 (479)
Q Consensus 447 ~l~~s~~g-~l-~sg~~d--g~v~vw~~~~~~ 474 (479)
.+.|+|++ .+ ++++.+ ..+.+|++.+++
T Consensus 414 ~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 414 TASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp EEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred EEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 89999999 44 445444 567888876543
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.77 E-value=3.7e-17 Score=167.38 Aligned_cols=262 Identities=10% Similarity=-0.015 Sum_probs=177.5
Q ss_pred ccccEEEEEeCCCCCEEEEEeC-CCcEEEEECCCCceEEEEecC-CceeEEEe--CCCEEEEEc----CCeEEEEEc---
Q 011711 191 HKKAVSGIALPLRSDKLYSGSR-DGTVQLWDCHTGQSASVINLG-AEVGSLIC--EGPWVFVGM----PNVVKAWHI--- 259 (479)
Q Consensus 191 H~~~V~~l~~s~~~~~l~s~s~-Dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~--~~~~l~~~~----~~~i~v~~~--- 259 (479)
+..+|.+++|+|||++||+++. ||+++||++..++........ ..+....+ + ++++++. +....+|.+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 3568999999999999999887 999999999776665544444 24444443 4 5555543 344556544
Q ss_pred -CCCceEEec-CCCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeC
Q 011711 260 -ESSAEFSLD-GPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSM 334 (479)
Q Consensus 260 -~~~~~~~~~-~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~ 334 (479)
..... .+. .....+.++.++++ .+++...++.+.+||+.++.. .. +..+.. .+++|+ |+++++++.
T Consensus 99 ~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~-----~~-l~~~~~--~~~~~spDG~~la~~~~ 169 (582)
T 3o4h_A 99 RPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL-----RE-LARLPG--FGFVSDIRGDLIAGLGF 169 (582)
T ss_dssp STTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE-----EE-EEEESS--CEEEEEEETTEEEEEEE
T ss_pred CCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE-----EE-eecCCC--ceEEECCCCCEEEEEEE
Confidence 33333 322 22233455555665 455555556666999987642 22 222222 566664 999998887
Q ss_pred C----CeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCC--eEEEEEcCCCcceEEeccccCccceEE---
Q 011711 335 D----NTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDN--TIKVWIMTEEGNLEVAYTHNEDHGVLA--- 403 (479)
Q Consensus 335 d----g~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~--- 403 (479)
+ +.|++||+.+++.. .+..|...+..+.|+ |+.|+++..++ .|++||+.+++.. .+..+...+....
T Consensus 170 ~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~ 247 (582)
T 3o4h_A 170 FGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTA 247 (582)
T ss_dssp EETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSE
T ss_pred cCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcc
Confidence 7 78999999988765 677888888888887 78999888888 8999999887665 4444444333222
Q ss_pred -EeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcCCCc---EEEEEe
Q 011711 404 -LGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDGTGM---LSVWKI 470 (479)
Q Consensus 404 -~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~---v~vw~~ 470 (479)
....++||| .++++++.|+.+++|++ ++... ...+.+.+++|+ ++ .+++++.+.. |.+|+.
T Consensus 248 ~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 248 ITWLGYLPDG-RLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EEEEEECTTS-CEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred ccceeEcCCC-cEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence 111257999 59999999999999999 55443 234678999999 88 7777766643 555554
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.77 E-value=3.4e-15 Score=143.12 Aligned_cols=266 Identities=11% Similarity=0.109 Sum_probs=165.9
Q ss_pred CCCCeEEEeecC--CC-ceeeEEEecccccEEEEEeCCCCCEEEEEeCC----CcEEEEECCC--CceEEEEecCCceeE
Q 011711 168 DECRFWHSWFCG--EG-FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD----GTVQLWDCHT--GQSASVINLGAEVGS 238 (479)
Q Consensus 168 ~~d~~i~vw~~~--~~-~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~D----g~v~vwd~~~--~~~~~~~~~~~~~~~ 238 (479)
+.++.|.+|.++ ++ .+.+..+ |...+..++|+|++++|++++.+ +.|.+|++.. ++.....
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~-------- 93 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN-------- 93 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE--------
T ss_pred CCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee--------
Confidence 457889999874 33 2233333 77888999999999999999986 7999998765 3322111
Q ss_pred EEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCCEEEEEe-CCCcEEEEEccCCCCCccccee--ee---
Q 011711 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGA-QDGNILVWKGIPNTQNPFQLAA--LL--- 312 (479)
Q Consensus 239 ~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~--~~--- 312 (479)
....+......+++..+.++++. .++.|.+|++...... ..... ..
T Consensus 94 ---------------------------~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~g~ 145 (361)
T 3scy_A 94 ---------------------------TQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGAL-LPASDVIEFKGS 145 (361)
T ss_dssp ---------------------------EEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCB-CSCSEEEECCCC
T ss_pred ---------------------------EeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcC-cccceeEEccCC
Confidence 11122334556666444555554 6788999998654321 01111 11
Q ss_pred -----cCCCCCeEEEEEc--CCEEEEEe-CCCeEEEEECCCCc-------EE-----EE-EeCCCCCcEEEEEc--CCEE
Q 011711 313 -----KGHTRPVTCLAVG--GKRLYSGS-MDNTIRVWDLDTLE-------AV-----MT-LNGHTDAPMSLLCW--DQYL 369 (479)
Q Consensus 313 -----~~h~~~i~~l~~~--~~~l~sgs-~dg~I~iwd~~~~~-------~~-----~~-~~~h~~~v~~~~~~--~~~l 369 (479)
..+...+.+++++ ++++++++ .++.|.+|++.... .. .. ...+...+..+.++ ++++
T Consensus 146 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l 225 (361)
T 3scy_A 146 GPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFA 225 (361)
T ss_dssp CSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred CCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEE
Confidence 1123346788886 77665554 58999999887543 21 12 22334456777777 6777
Q ss_pred EEEe-CCCeEEEEEcCCCcce--EEeccccCccceEEEeeeeCCCCCcEEEEEeC-CCeEEEeecC--CCc--eeeeeec
Q 011711 370 LSCS-LDNTIKVWIMTEEGNL--EVAYTHNEDHGVLALGGLNDPDGNPVLICSCN-DDSVHLYELP--SFM--ERGRIFS 441 (479)
Q Consensus 370 ~s~s-~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~v~iwd~~--~~~--~~~~~~~ 441 (479)
++++ .++.|.+||+.++... .......... .....+.++|+|+.++++... ++.|.+|++. +++ .+..+..
T Consensus 226 ~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~-~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~ 304 (361)
T 3scy_A 226 YLINEIGGTVIAFRYADGMLDEIQTVAADTVNA-QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT 304 (361)
T ss_dssp EEEETTTCEEEEEEEETTEEEEEEEEESCSSCC-CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC
T ss_pred EEEcCCCCeEEEEEecCCceEEeEEEecCCCCC-CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC
Confidence 7776 6899999999865321 1121111110 111334457999955555555 6899999996 343 3333444
Q ss_pred cCceEEEEECCCc-eEEEEc-CCCcEEEEEecc
Q 011711 442 RREVRVIETGPDG-LFFTGD-GTGMLSVWKILA 472 (479)
Q Consensus 442 ~~~v~~l~~s~~g-~l~sg~-~dg~v~vw~~~~ 472 (479)
...+..++|+|+| +|++++ .++.|.+|+++.
T Consensus 305 g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 305 GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 5578899999999 666665 789999988764
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.73 E-value=1.8e-16 Score=166.42 Aligned_cols=318 Identities=6% Similarity=-0.062 Sum_probs=200.1
Q ss_pred CCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEeCCC----
Q 011711 94 PSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDE---- 169 (479)
Q Consensus 94 ~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~---- 169 (479)
.+++|+|||++++++. ||++++|+..+.... ....+.. ........+.+.+.+..++.++.
T Consensus 19 ~~~~~s~dg~~~~~~~-d~~i~~~~~~~g~~~-------~~~~~~~-------~~~~~~~~~~~SpDg~~la~~~~~~~~ 83 (719)
T 1z68_A 19 FFPNWISGQEYLHQSA-DNNIVLYNIETGQSY-------TILSNRT-------MKSVNASNYGLSPDRQFVYLESDYSKL 83 (719)
T ss_dssp CCCEESSSSEEEEECT-TSCEEEEESSSCCEE-------EEECHHH-------HHTTTCSEEEECTTSSEEEEEEEEEEC
T ss_pred CccEECCCCeEEEEcC-CCCEEEEEcCCCcEE-------EEEcccc-------ccccceeeEEECCCCCeEEEEecCcee
Confidence 5889999999888876 999999987654320 0000000 00001346677777887877655
Q ss_pred -----CCeEEEeecCCCceee--EEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC--------
Q 011711 170 -----CRFWHSWFCGEGFTML--AKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA-------- 234 (479)
Q Consensus 170 -----d~~i~vw~~~~~~~~~--~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~-------- 234 (479)
++.|++||+.++ +.+ ..+ ...+..++|||||+.|+.++ |+.|++||+.+++.......+.
T Consensus 84 ~~~s~~~~i~~~d~~~g-~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~ 158 (719)
T 1z68_A 84 WRYSYTATYYIYDLSNG-EFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGI 158 (719)
T ss_dssp SSSCEEEEEEEEETTTT-EECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESS
T ss_pred EEeecceEEEEEECCCC-ccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccc
Confidence 789999999888 432 222 25688999999999999986 7899999999887755332221
Q ss_pred -------------ceeEEEeCCCEEEEEc-CC----------------------------------eEEEEEcCCCceE-
Q 011711 235 -------------EVGSLICEGPWVFVGM-PN----------------------------------VVKAWHIESSAEF- 265 (479)
Q Consensus 235 -------------~~~~~~~~~~~l~~~~-~~----------------------------------~i~v~~~~~~~~~- 265 (479)
....++++|+.|+.+. +. .|.+||+.+++..
T Consensus 159 ~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~ 238 (719)
T 1z68_A 159 PDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVG 238 (719)
T ss_dssp CCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHC
T ss_pred ccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccc
Confidence 1345556888887653 21 7889999987642
Q ss_pred --E------ecCCCccEEEEEEcCC--EEEEEeCC----CcEEEEE----ccCCCCCccccee-eecCCCCCeE-----E
Q 011711 266 --S------LDGPVGEVYSMVVANE--MLFAGAQD----GNILVWK----GIPNTQNPFQLAA-LLKGHTRPVT-----C 321 (479)
Q Consensus 266 --~------~~~~~~~v~~~~~~~~--~l~~g~~d----g~i~iwd----~~~~~~~~~~~~~-~~~~h~~~i~-----~ 321 (479)
. +..+...+..++|+|+ ++++.... ..|.+|| +.++... .... ....|...+. .
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~ 316 (719)
T 1z68_A 239 PQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP--KTQEHIEESRTGWAGGFFVST 316 (719)
T ss_dssp CEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC--GGGEEEEECSSSCSSSSSCCC
T ss_pred eeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE--EEEecccccCCceEccccCCc
Confidence 2 2357788999999999 44443322 2488888 6554321 1110 0135666555 6
Q ss_pred EEEc--CCEEE--EEeCCC--eEEEEECCCCcEEEEEeCCCCCcEEEEE-cCCEEEEEeCC-----CeEEEEEcCC--Cc
Q 011711 322 LAVG--GKRLY--SGSMDN--TIRVWDLDTLEAVMTLNGHTDAPMSLLC-WDQYLLSCSLD-----NTIKVWIMTE--EG 387 (479)
Q Consensus 322 l~~~--~~~l~--sgs~dg--~I~iwd~~~~~~~~~~~~h~~~v~~~~~-~~~~l~s~s~d-----g~i~iwd~~~--~~ 387 (479)
+.|+ ++.++ +...+| .|.+||+.+++ ...+..+...+..+.+ +++.|+..+.+ +..++|.+.. +.
T Consensus 317 ~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (719)
T 1z68_A 317 PVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYP 395 (719)
T ss_dssp CEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSS
T ss_pred cEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCC
Confidence 7775 66443 344555 57778887776 4555555555555443 46667666654 8889998764 21
Q ss_pred -ceEEecc----ccCccceEEEeeeeCCCCCcEEEEEeCC--CeEEEeecCCCceeee
Q 011711 388 -NLEVAYT----HNEDHGVLALGGLNDPDGNPVLICSCND--DSVHLYELPSFMERGR 438 (479)
Q Consensus 388 -~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~s~~~d--g~v~iwd~~~~~~~~~ 438 (479)
....+.. +...... ..++|+++.++++.+.. ..+.+||+.+++....
T Consensus 396 ~~~~~l~~~~~~~~~~~~~----~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~ 449 (719)
T 1z68_A 396 PSKKCVTCHLRKERCQYYT----ASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKI 449 (719)
T ss_dssp CCEEESSTTTTTTTBCBEE----EEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEE
T ss_pred CCceeccCccCCCCCceEE----EEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEE
Confidence 1233222 1122222 33468888777666544 5788999887765433
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.73 E-value=7.9e-16 Score=148.94 Aligned_cols=252 Identities=13% Similarity=-0.016 Sum_probs=162.1
Q ss_pred eEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeE-----EEeCCCEE
Q 011711 172 FWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS-----LICEGPWV 246 (479)
Q Consensus 172 ~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~-----~~~~~~~l 246 (479)
.|.+||+.++ +......+|...+..++|+||++.|+.++.++.|++||+.+++............. ..+++..+
T Consensus 61 ~l~~~d~~~g-~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l 139 (388)
T 3pe7_A 61 NYYLLDLNTQ-VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKL 139 (388)
T ss_dssp EEEEEETTTC-EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEE
T ss_pred eEEEEeCCCC-ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCee
Confidence 3456666665 55555556666666778999999999999999999999999988777665544221 13467777
Q ss_pred EEE-----------------------cCCeEEEEEcCCCceEEecCCCccEEEEEEcC-C--EEEEEeCC------CcEE
Q 011711 247 FVG-----------------------MPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN-E--MLFAGAQD------GNIL 294 (479)
Q Consensus 247 ~~~-----------------------~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~-~--~l~~g~~d------g~i~ 294 (479)
++. .+..|.+||+.+++...+..+...+..+.|+| + .|+....+ ..|.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~ 219 (388)
T 3pe7_A 140 VGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMW 219 (388)
T ss_dssp EEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEE
T ss_pred ccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEE
Confidence 632 33689999999998877777777889999999 6 56665543 3788
Q ss_pred EEEccCCCCCcccceeeecCCC--CCeEEEEEc--CCEEEEEe-CCC----eEEEEECCCCcEE--EEEeCCC-----CC
Q 011711 295 VWKGIPNTQNPFQLAALLKGHT--RPVTCLAVG--GKRLYSGS-MDN----TIRVWDLDTLEAV--MTLNGHT-----DA 358 (479)
Q Consensus 295 iwd~~~~~~~~~~~~~~~~~h~--~~i~~l~~~--~~~l~sgs-~dg----~I~iwd~~~~~~~--~~~~~h~-----~~ 358 (479)
++|..... ...+..+. ..+..+.|+ |+.|+..+ .++ .|++||+.+++.. ..+..+. ..
T Consensus 220 ~~d~~~~~------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~ 293 (388)
T 3pe7_A 220 LINEDGTN------MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYD 293 (388)
T ss_dssp EEETTSCC------CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTT
T ss_pred EEeCCCCc------eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCC
Confidence 88876543 22233333 246778886 66664433 222 3999999998743 3333310 11
Q ss_pred cEEEEEcCCEEEEE---------eCCCeEEEEEcCCCcceEEeccccCccce-------EEEeeeeCCCCCcEEEEEeCC
Q 011711 359 PMSLLCWDQYLLSC---------SLDNTIKVWIMTEEGNLEVAYTHNEDHGV-------LALGGLNDPDGNPVLICSCND 422 (479)
Q Consensus 359 v~~~~~~~~~l~s~---------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~s~~~d 422 (479)
-..++.+++.|+.. ..+..|++||+.+++. ..+..+...... ......++|+|+.+++++..+
T Consensus 294 ~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~ 372 (388)
T 3pe7_A 294 GSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH 372 (388)
T ss_dssp SSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT
T ss_pred CCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCC
Confidence 12455667666643 4567899999987654 334333330000 112334579999777777677
Q ss_pred CeEEEeecC
Q 011711 423 DSVHLYELP 431 (479)
Q Consensus 423 g~v~iwd~~ 431 (479)
+...||.++
T Consensus 373 g~~~l~~~~ 381 (388)
T 3pe7_A 373 GKPALYLAT 381 (388)
T ss_dssp SSCEEEEEE
T ss_pred CceeEEEEE
Confidence 777777553
No 158
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.72 E-value=1.5e-14 Score=138.57 Aligned_cols=273 Identities=11% Similarity=0.089 Sum_probs=188.6
Q ss_pred CCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeC----------CCcEEEEECCCCceEEEEecC-----
Q 011711 169 ECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR----------DGTVQLWDCHTGQSASVINLG----- 233 (479)
Q Consensus 169 ~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~----------Dg~v~vwd~~~~~~~~~~~~~----- 233 (479)
.|+.|.+||..++ +.+..+..+..+ .++|+||+++|+++.. +++|.+||..+++.+..+...
T Consensus 29 ~d~~v~v~D~~t~-~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~ 105 (361)
T 2oiz_A 29 TESRVHVYDYTNG-KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ 105 (361)
T ss_dssp GGCEEEEEETTTC-CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred ccCeEEEEECCCC-eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence 4689999999888 777888887776 8999999999999873 678999999999999888753
Q ss_pred --C--ceeEEEeCCCEEEEEc---CCeEEEEEcCCCceEEe-cCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCC
Q 011711 234 --A--EVGSLICEGPWVFVGM---PNVVKAWHIESSAEFSL-DGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNT 302 (479)
Q Consensus 234 --~--~~~~~~~~~~~l~~~~---~~~i~v~~~~~~~~~~~-~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~ 302 (479)
. ....+.+++++++++. ++.|.+||+.+++.... ....+ ...+.+.++ .+++.+.||.+.+|+.....
T Consensus 106 ~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g 184 (361)
T 2oiz_A 106 GLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDG 184 (361)
T ss_dssp BCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred cCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence 1 1235566899988763 57899999999877654 33222 222344443 78888999999999986532
Q ss_pred CCcccce---eeecCCCCCeEE-EEEcCCEEEEEeCCCeEEEEECCCCcE--EEEEeCC------------CCCcEEEEE
Q 011711 303 QNPFQLA---ALLKGHTRPVTC-LAVGGKRLYSGSMDNTIRVWDLDTLEA--VMTLNGH------------TDAPMSLLC 364 (479)
Q Consensus 303 ~~~~~~~---~~~~~h~~~i~~-l~~~~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~h------------~~~v~~~~~ 364 (479)
.. .... ..+..+..++.. ...++..++..+.++.|.++|+..... +..+... ......+..
T Consensus 185 ~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~ 263 (361)
T 2oiz_A 185 KV-ASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR 263 (361)
T ss_dssp SE-EEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET
T ss_pred cE-eeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec
Confidence 10 0000 112222222211 122366777778899999999976542 2232211 111234444
Q ss_pred cCCEEEEEeC-----------CCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCC
Q 011711 365 WDQYLLSCSL-----------DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSF 433 (479)
Q Consensus 365 ~~~~l~s~s~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 433 (479)
+++.++++.. ++.|.+||+.+.+.+..+..+. ...+.+ +|+|+ +|++++. +.|.+||..++
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~----spdg~-~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTI----DQQRN-LMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEE----ETTTT-EEEEECS-SCEEEEECSSS
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEE----CCCCC-EEEEeCC-CeEEEEECCCC
Confidence 4676666543 3589999999998877776655 455555 59999 6666665 99999999999
Q ss_pred --ceeeee-eccCceEEEEECCCc
Q 011711 434 --MERGRI-FSRREVRVIETGPDG 454 (479)
Q Consensus 434 --~~~~~~-~~~~~v~~l~~s~~g 454 (479)
+.+..+ ........++++|+|
T Consensus 336 ~l~~~~~i~~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 336 EPKLLRTIEGAAEASLQVQFHPVG 359 (361)
T ss_dssp SCEEEEEETTSCSSEEEEEECCCS
T ss_pred cceeeEEeccCCCCcEEEEecCCC
Confidence 888886 457778999999987
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.72 E-value=4.6e-15 Score=141.08 Aligned_cols=265 Identities=9% Similarity=-0.005 Sum_probs=174.8
Q ss_pred CCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCe-eEeCCCCCe
Q 011711 94 PSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN-CVKGDECRF 172 (479)
Q Consensus 94 ~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~-~~~g~~d~~ 172 (479)
++++++++++++++++.|+++++||..+.... ... ..+. ......+++.+.+.. ++++..++.
T Consensus 3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~----~~~--~~~~----------~~~~~~~~~s~dg~~~~v~~~~~~~ 66 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTNYPNNLHVVDVASDTVY----KSC--VMPD----------KFGPGTAMMAPDNRTAYVLNNHYGD 66 (349)
T ss_dssp -CCCCCTTCEEEEEEETTTEEEEEETTTTEEE----EEE--ECSS----------CCSSCEEEECTTSSEEEEEETTTTE
T ss_pred ccccccCCCEEEEEeCCCCeEEEEECCCCcEE----EEE--ecCC----------CCCCceeEECCCCCEEEEEeCCCCc
Confidence 57789999999999999999999986553210 000 0000 002346677777664 456678899
Q ss_pred EEEeecCCCceeeEEEecc------cccEEEEEeCCCCCEEEEEeCC------------CcEEEEECCCCc---eEEEEe
Q 011711 173 WHSWFCGEGFTMLAKLEGH------KKAVSGIALPLRSDKLYSGSRD------------GTVQLWDCHTGQ---SASVIN 231 (479)
Q Consensus 173 i~vw~~~~~~~~~~~~~~H------~~~V~~l~~s~~~~~l~s~s~D------------g~v~vwd~~~~~---~~~~~~ 231 (479)
|.+||+.++ +.+..+..+ ...+.+++|+|+|++|++++.+ +.|.+||+.+++ .+..+.
T Consensus 67 i~~~d~~t~-~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 145 (349)
T 1jmx_B 67 IYGIDLDTC-KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP 145 (349)
T ss_dssp EEEEETTTT-EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE
T ss_pred EEEEeCCCC-cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc
Confidence 999999888 666666533 2347899999999999999865 899999998844 344454
Q ss_pred cCCceeE--EEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCc-------------------------cEEEEEEcCC--
Q 011711 232 LGAEVGS--LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVG-------------------------EVYSMVVANE-- 282 (479)
Q Consensus 232 ~~~~~~~--~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~-------------------------~v~~~~~~~~-- 282 (479)
....+.+ +.++++ ++++ ++.|.+||..+++......... ....+.+.++
T Consensus 146 ~~~~~~~~~~s~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 223 (349)
T 1jmx_B 146 MPRQVYLMRAADDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK 223 (349)
T ss_dssp CCSSCCCEEECTTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred CCCcccceeECCCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCc
Confidence 4444443 445788 4444 3449999999887653221111 2233444321
Q ss_pred -----------EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCCCcE
Q 011711 283 -----------MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEA 348 (479)
Q Consensus 283 -----------~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~ 348 (479)
++.....++.+.+|++ ..+...+.+++++ +++++++ ++.|.+||+.+++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~ 287 (349)
T 1jmx_B 224 QDPATADLLYGYLSVDLKTGKTHTQEF--------------ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKL 287 (349)
T ss_dssp ---CCCEEEEEEEEEETTTCCEEEEEE--------------EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEE
T ss_pred CCccccccceeEEEEeccCCcEEeccc--------------ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeE
Confidence 1112233344444443 2244556677764 6678777 89999999999998
Q ss_pred EEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEecc
Q 011711 349 VMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYT 394 (479)
Q Consensus 349 ~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 394 (479)
+..+... ..+..+.++ +++|++++.++.|.+||+.+.+.+..+..
T Consensus 288 ~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 288 IKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp EEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 8888643 345677776 67888888899999999988776655443
No 160
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.70 E-value=2.1e-14 Score=136.79 Aligned_cols=232 Identities=13% Similarity=0.157 Sum_probs=156.7
Q ss_pred CCCeEEEeccCCeeEeCC---CCCeEEEeecCCC-ceeeEEEecccccEEEEEeCCCCCEEEEEe-CCCcEEEEECCC-C
Q 011711 151 TPKNVCYHWLSGNCVKGD---ECRFWHSWFCGEG-FTMLAKLEGHKKAVSGIALPLRSDKLYSGS-RDGTVQLWDCHT-G 224 (479)
Q Consensus 151 ~~~~~c~~~~~~~~~~g~---~d~~i~vw~~~~~-~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s-~Dg~v~vwd~~~-~ 224 (479)
.+..+++.+.+. +++.+ .++.|.+|++.++ .+.+..+..|...+..++|+|++++|++++ .++.|.+|++.. +
T Consensus 41 ~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g 119 (347)
T 3hfq_A 41 NPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADG 119 (347)
T ss_dssp CCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTS
T ss_pred CcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCC
Confidence 344577777666 54443 3689999999766 235566667888899999999999998888 689999999963 3
Q ss_pred c--eEEEEecCC----------ce--eEEEeCCCEEEEE-cCCeEEEEEcC-CCceEE---ec-CCCccEEEEEEcCC--
Q 011711 225 Q--SASVINLGA----------EV--GSLICEGPWVFVG-MPNVVKAWHIE-SSAEFS---LD-GPVGEVYSMVVANE-- 282 (479)
Q Consensus 225 ~--~~~~~~~~~----------~~--~~~~~~~~~l~~~-~~~~i~v~~~~-~~~~~~---~~-~~~~~v~~~~~~~~-- 282 (479)
. .+..+.... .+ ..+.++++++++. .++.|.+|++. ++.... .. ........++|+++
T Consensus 120 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~ 199 (347)
T 3hfq_A 120 ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQ 199 (347)
T ss_dssp CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred CeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCC
Confidence 3 233333221 12 3444578855555 47789999998 444321 12 22336778999988
Q ss_pred EEEE-EeCCCcEEEEEccCCCCCcccceeeecCCC------CCeEEEEEc--CCEE-EEEeCCCeEEEEECC---CCcEE
Q 011711 283 MLFA-GAQDGNILVWKGIPNTQNPFQLAALLKGHT------RPVTCLAVG--GKRL-YSGSMDNTIRVWDLD---TLEAV 349 (479)
Q Consensus 283 ~l~~-g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~------~~i~~l~~~--~~~l-~sgs~dg~I~iwd~~---~~~~~ 349 (479)
++++ ...++.|.+|++...... ......+.... ..+..++|+ +++| ++...++.|.+||+. +.+.+
T Consensus 200 ~l~v~~~~~~~v~v~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~ 278 (347)
T 3hfq_A 200 YAFLAGELSSQIASLKYDTQTGA-FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLI 278 (347)
T ss_dssp EEEEEETTTTEEEEEEEETTTTE-EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEE
T ss_pred EEEEEeCCCCEEEEEEecCCCCc-eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEe
Confidence 4544 567889999998752211 22222332222 347788886 7766 556678999999997 33566
Q ss_pred EEEeCCCCCcEEEEEc--CCEEEEEeCC-CeEEEEEcC
Q 011711 350 MTLNGHTDAPMSLLCW--DQYLLSCSLD-NTIKVWIMT 384 (479)
Q Consensus 350 ~~~~~h~~~v~~~~~~--~~~l~s~s~d-g~i~iwd~~ 384 (479)
..+..+...+..++++ +++|++++.+ +.|.+|+++
T Consensus 279 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 279 QQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 6777766677888887 6788877764 899999654
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.69 E-value=6.3e-14 Score=134.25 Aligned_cols=313 Identities=10% Similarity=0.085 Sum_probs=183.4
Q ss_pred CCCCCCCceeccCC----CCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEeCCCC
Q 011711 95 SYNCPKNNVRVSSG----SEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDEC 170 (479)
Q Consensus 95 ~~~~s~~g~~las~----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~d 170 (479)
..+..++..++..| +.++.|.+|.+....... ......+...+..+++.+.+..+++++.+
T Consensus 6 ~~~~~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~---------------~~~~~~~~~~p~~l~~spdg~~l~~~~~~ 70 (361)
T 3scy_A 6 DPSTTDSELTMLVGTYTSGNSKGIYTFRFNEETGES---------------LPLSDAEVANPSYLIPSADGKFVYSVNEF 70 (361)
T ss_dssp CCCGGGGEEEEEEEECCSSSCCEEEEEEEETTTCCE---------------EEEEEEECSCCCSEEECTTSSEEEEEECC
T ss_pred ChhhCCCceEEEEEeccCCCCCCEEEEEEeCCCCCE---------------EEeecccCCCCceEEECCCCCEEEEEEcc
Confidence 44444555555444 457889999654321100 00011123344567888888777776664
Q ss_pred ----CeEEEeecCC--C-ceeeEEEecccccEEEEEeCCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCceeEEEeC
Q 011711 171 ----RFWHSWFCGE--G-FTMLAKLEGHKKAVSGIALPLRSDKLYSGS-RDGTVQLWDCHTGQSASVINLGAEVGSLICE 242 (479)
Q Consensus 171 ----~~i~vw~~~~--~-~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s-~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 242 (479)
+.|.+|++.. + .+.+.....+......+++ ++++|++++ .++.|.+|++.....+..+..
T Consensus 71 ~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~---------- 138 (361)
T 3scy_A 71 SKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD---------- 138 (361)
T ss_dssp SSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE----------
T ss_pred CCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce----------
Confidence 8999999875 3 2344555556667888888 788777776 578999999975443211100
Q ss_pred CCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEE-eCCCcEEEEEccCCCC----Ccccc----eee
Q 011711 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAG-AQDGNILVWKGIPNTQ----NPFQL----AAL 311 (479)
Q Consensus 243 ~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g-~~dg~i~iwd~~~~~~----~~~~~----~~~ 311 (479)
..............+...+.+++++|+ .++++ ..++.|.+|++..... ..+.. ...
T Consensus 139 -------------~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 139 -------------VIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp -------------EEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred -------------eEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 000000000001122345688999987 45554 4588999999876532 00000 122
Q ss_pred ecCCCCCeEEEEEc--CCEEEEEe-CCCeEEEEECCCCcE--EEEEeC---CCCCcEEEEEc--CCEEEEEeCC--CeEE
Q 011711 312 LKGHTRPVTCLAVG--GKRLYSGS-MDNTIRVWDLDTLEA--VMTLNG---HTDAPMSLLCW--DQYLLSCSLD--NTIK 379 (479)
Q Consensus 312 ~~~h~~~i~~l~~~--~~~l~sgs-~dg~I~iwd~~~~~~--~~~~~~---h~~~v~~~~~~--~~~l~s~s~d--g~i~ 379 (479)
...+......++|+ ++++++++ .++.|.+||+.+++. +..+.. +......+.++ +++|+++..+ +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 23345567889997 77777776 689999999987754 333332 23345677776 7788666654 8999
Q ss_pred EEEcCC-CcceEEeccc--cCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeec--CCCceeeee--eccCceEEEEEC
Q 011711 380 VWIMTE-EGNLEVAYTH--NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL--PSFMERGRI--FSRREVRVIETG 451 (479)
Q Consensus 380 iwd~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~--~~~~~~~~~--~~~~~v~~l~~s 451 (479)
+|++.. ...+..+... ......+. ++|+|+.++++...++.|.+|++ .+++..... .+...+.|+.|.
T Consensus 286 v~~~~~~~g~~~~~~~~~~g~~~~~~~----~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLTGIHPRNFI----ITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTCCEEEEEEEECSSCCCEEE----ECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEcCCCCcEEEeeEecCCCCCceEE----ECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 999962 2222222111 22233333 46999955555557899999654 456554332 234568888875
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.69 E-value=2.4e-15 Score=153.97 Aligned_cols=256 Identities=9% Similarity=0.002 Sum_probs=178.8
Q ss_pred CeEEEeccCCeeEeCCC-CCeEEEeecCCCceeeEEEeccc-ccEEEEEeCCCCCEEEEEeC---CCcEEEEECCC---C
Q 011711 153 KNVCYHWLSGNCVKGDE-CRFWHSWFCGEGFTMLAKLEGHK-KAVSGIALPLRSDKLYSGSR---DGTVQLWDCHT---G 224 (479)
Q Consensus 153 ~~~c~~~~~~~~~~g~~-d~~i~vw~~~~~~~~~~~~~~H~-~~V~~l~~s~~~~~l~s~s~---Dg~v~vwd~~~---~ 224 (479)
..+.+.+.+..++.++. |++++||+++.+ +. ..+..|. ..|..++|+|| +++++++. +...++|.+.. +
T Consensus 25 ~~~~~~~DG~~la~~s~~~g~~~lw~~~~g-~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g 101 (582)
T 3o4h_A 25 YSLQGVVDGDKLLVVGFSEGSVNAYLYDGG-ET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPG 101 (582)
T ss_dssp EEEEEEETTTEEEEEEEETTEEEEEEEETT-EE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTT
T ss_pred heeecCCCCCeEEEEEccCCceeEEEEcCC-Cc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCC
Confidence 46677888888888776 999999999655 44 4455555 68999999999 78887775 45566665433 3
Q ss_pred ceEEEEecC--CceeEEEeCCC--EEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCC----CcEE
Q 011711 225 QSASVINLG--AEVGSLICEGP--WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQD----GNIL 294 (479)
Q Consensus 225 ~~~~~~~~~--~~~~~~~~~~~--~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~d----g~i~ 294 (479)
... .+... ....++.++++ .++++.++.+.+||+.+++...+..+.. .+++|+|+ .|++++.+ +.|+
T Consensus 102 ~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~ 178 (582)
T 3o4h_A 102 EEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLF 178 (582)
T ss_dssp CCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEE
T ss_pred ccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEE
Confidence 322 33222 22446667775 4445566677799999988765544433 67777766 78877766 7899
Q ss_pred EEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCC--eEEEEECCCCcEEEEEeCCCCCcEEEE-------
Q 011711 295 VWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDN--TIRVWDLDTLEAVMTLNGHTDAPMSLL------- 363 (479)
Q Consensus 295 iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg--~I~iwd~~~~~~~~~~~~h~~~v~~~~------- 363 (479)
+||+.++. ...+..|...+..++|+ |+.|+++..++ .|++||+.+++.. .+..|...+..+.
T Consensus 179 ~~d~~~g~------~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 251 (582)
T 3o4h_A 179 TSNLSSGG------LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWL 251 (582)
T ss_dssp EEETTTCC------CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred EEcCCCCC------ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccce
Confidence 99988765 33567788889999997 88999888898 8999999999887 7777776655444
Q ss_pred -Ec--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCC---eEEEeecCC
Q 011711 364 -CW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD---SVHLYELPS 432 (479)
Q Consensus 364 -~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~v~iwd~~~ 432 (479)
++ +.++++++.|+.+++|++ ++... .....+. .+.++ +++ ++++++.+. .+.+||..+
T Consensus 252 ~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~----~~~~s-dg~-~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 252 GYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHG----RVVLW-RGK-LVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEE----EEEEE-TTE-EEEEEEETTEEEEEEEETTCC
T ss_pred eEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceE----EEEec-CCE-EEEEEcCCCCCCeEEEEcCCC
Confidence 55 678899999999999999 43222 2222222 33345 676 666666664 366666654
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.69 E-value=1.8e-14 Score=138.45 Aligned_cols=265 Identities=10% Similarity=0.040 Sum_probs=161.3
Q ss_pred CeEEEeecC--CC-ceeeEEEe-cccccEEEEEeCCCCCEEEEEeCCCcEEEEECC-CCceEEEEecCCceeEEEeCCCE
Q 011711 171 RFWHSWFCG--EG-FTMLAKLE-GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCH-TGQSASVINLGAEVGSLICEGPW 245 (479)
Q Consensus 171 ~~i~vw~~~--~~-~~~~~~~~-~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~ 245 (479)
+.|.+|+++ ++ .+.+.... ++...+..++|+|++++|++++.+ .|.+|++. +++........
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~------------ 80 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP------------ 80 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE------------
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee------------
Confidence 467777763 44 11222221 234578899999999999999988 99999987 67654322110
Q ss_pred EEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--E--EEEEe-------------CCCcEEEEEccCCCCCcccc
Q 011711 246 VFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--M--LFAGA-------------QDGNILVWKGIPNTQNPFQL 308 (479)
Q Consensus 246 l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~--l~~g~-------------~dg~i~iwd~~~~~~~~~~~ 308 (479)
.+ +....++++++ . ++++. .+|.+.+|++...... ...
T Consensus 81 -----------------------~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~-~~~ 135 (365)
T 1jof_A 81 -----------------------IG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKL-EKN 135 (365)
T ss_dssp -----------------------CC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCE-EEE
T ss_pred -----------------------cC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcC-cce
Confidence 00 01122445554 2 22332 6889999998742210 111
Q ss_pred eeeec-CCCCCeEEEEEc--CCEEEEEeC-CCeEEEEECC-CCcEE--EEEe--CCCCCcEEEEEc--CCEEEEEeC-CC
Q 011711 309 AALLK-GHTRPVTCLAVG--GKRLYSGSM-DNTIRVWDLD-TLEAV--MTLN--GHTDAPMSLLCW--DQYLLSCSL-DN 376 (479)
Q Consensus 309 ~~~~~-~h~~~i~~l~~~--~~~l~sgs~-dg~I~iwd~~-~~~~~--~~~~--~h~~~v~~~~~~--~~~l~s~s~-dg 376 (479)
...+. .+...+.+++|+ +++++++.. ++.|++||+. +++.. ..+. .|...+..+.++ ++++++++. ++
T Consensus 136 ~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~ 215 (365)
T 1jof_A 136 VQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN 215 (365)
T ss_dssp EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred EeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCC
Confidence 11111 245678899997 777877664 6899999998 77653 3343 235567778877 678877775 78
Q ss_pred eEEEEEcCC--Ccce---EEeccccCc---cce------EEEeee-eCCCCCcEEEEEeCCC-----eEEEeecC-CCce
Q 011711 377 TIKVWIMTE--EGNL---EVAYTHNED---HGV------LALGGL-NDPDGNPVLICSCNDD-----SVHLYELP-SFME 435 (479)
Q Consensus 377 ~i~iwd~~~--~~~~---~~~~~~~~~---~~~------~~~~~~-~~~~~~~~l~s~~~dg-----~v~iwd~~-~~~~ 435 (479)
.|.+|+++. ++.. ..+...... ... ....+. ++|+|+.++++...++ .|.+|++. +++.
T Consensus 216 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~ 295 (365)
T 1jof_A 216 RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI 295 (365)
T ss_dssp EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE
T ss_pred eEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE
Confidence 999998763 3321 112211111 010 233444 6799995544443333 89999996 5554
Q ss_pred eee---ee-ccCceEEEEECC---Cc-eEEEEcC-CCcEEEEEeccC
Q 011711 436 RGR---IF-SRREVRVIETGP---DG-LFFTGDG-TGMLSVWKILAK 473 (479)
Q Consensus 436 ~~~---~~-~~~~v~~l~~s~---~g-~l~sg~~-dg~v~vw~~~~~ 473 (479)
... .. ....+..++|+| || +|++++. ++.|.+|+++..
T Consensus 296 ~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 296 EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 331 22 244577899999 78 7777776 599999998754
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.67 E-value=2.3e-14 Score=150.87 Aligned_cols=329 Identities=9% Similarity=-0.061 Sum_probs=196.3
Q ss_pred CCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEeCCCC-
Q 011711 92 SPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDEC- 170 (479)
Q Consensus 92 ~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~d- 170 (479)
...+++|+|||++++++ ||+|++|+..+..... .-.+... ... ........+++.+..++.++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~-------~~~~~~~-~~~----~~~~~~~~~Spdg~~l~~~~~~~ 83 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSV-------FLENSTF-DEF----GHSINDYSISPDGQFILLEYNYV 83 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEE-------EECTTTT-TTC----CSCCCEEEECTTSSEEEEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEE-------EEechhh-hhh----cccccceEECCCCCEEEEEECCe
Confidence 35789999999999997 9999999877654210 0000000 000 0000125567777777766655
Q ss_pred --------CeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCc-------
Q 011711 171 --------RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE------- 235 (479)
Q Consensus 171 --------~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~------- 235 (479)
+.+.+||+.++ + ...+..|.+.+...+|||||+.||.++ |+.|.+||+.+++..+....+..
T Consensus 84 ~~~r~~~~~~~~~~d~~~~-~-~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~ 160 (740)
T 4a5s_A 84 KQWRHSYTASYDIYDLNKR-Q-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGI 160 (740)
T ss_dssp ECSSSCEEEEEEEEETTTT-E-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESB
T ss_pred eeEEEccceEEEEEECCCC-c-EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCc
Confidence 56779999988 4 345777888999999999999999885 68999999998875543221111
Q ss_pred --------------eeEEEeCCCEEEEEc-C------------------------------------CeEEEEEcCC---
Q 011711 236 --------------VGSLICEGPWVFVGM-P------------------------------------NVVKAWHIES--- 261 (479)
Q Consensus 236 --------------~~~~~~~~~~l~~~~-~------------------------------------~~i~v~~~~~--- 261 (479)
....+++|+.|+... + ..|.+||+.+
T Consensus 161 ~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~ 240 (740)
T 4a5s_A 161 TDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSS 240 (740)
T ss_dssp CCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCS
T ss_pred ccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCC
Confidence 134566888776531 1 1588899998
Q ss_pred C---ceEEecC------CCccEEEEEEcCC--EEEEEeC----CCcEEEEEccCCC----CCcccceeeecCCCCCeE--
Q 011711 262 S---AEFSLDG------PVGEVYSMVVANE--MLFAGAQ----DGNILVWKGIPNT----QNPFQLAALLKGHTRPVT-- 320 (479)
Q Consensus 262 ~---~~~~~~~------~~~~v~~~~~~~~--~l~~g~~----dg~i~iwd~~~~~----~~~~~~~~~~~~h~~~i~-- 320 (479)
+ +...+.. +...+..++|+|+ .++.... +..|.+||+.++. ..... ...-..|...|.
T Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~-~l~~~~~~~~v~~~ 319 (740)
T 4a5s_A 241 VTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVAR-QHIEMSTTGWVGRF 319 (740)
T ss_dssp SSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGG-CEEEECSSSCSSSS
T ss_pred CCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEE-EeeeccCCceEccC
Confidence 7 4444443 7778999999988 3444332 3369999998875 11011 111134544433
Q ss_pred ---EEEEc--CCEEE-EEeC-C--CeEEEEECCCCcEEEEEeCCCCCcEEEE-EcCCEEEEEeCC-----CeEEEE--Ec
Q 011711 321 ---CLAVG--GKRLY-SGSM-D--NTIRVWDLDTLEAVMTLNGHTDAPMSLL-CWDQYLLSCSLD-----NTIKVW--IM 383 (479)
Q Consensus 321 ---~l~~~--~~~l~-sgs~-d--g~I~iwd~~~~~~~~~~~~h~~~v~~~~-~~~~~l~s~s~d-----g~i~iw--d~ 383 (479)
...|+ |+.++ ..+. + ..|++||+.+++... +......+..+. ++++.|+..+.. +...|| ++
T Consensus 320 ~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~ 398 (740)
T 4a5s_A 320 RPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL 398 (740)
T ss_dssp SCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEET
T ss_pred cCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEEC
Confidence 56675 77766 5553 3 468889998776553 433344455443 556665554443 344455 44
Q ss_pred CCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCC--CeEEEeecCCCceeeee
Q 011711 384 TEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND--DSVHLYELPSFMERGRI 439 (479)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d--g~v~iwd~~~~~~~~~~ 439 (479)
........+...............++|+++.++.+.+.. ..+.+++..+++....+
T Consensus 399 ~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l 456 (740)
T 4a5s_A 399 IDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL 456 (740)
T ss_dssp TEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEE
T ss_pred CCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEe
Confidence 332222122211000111223344579999666555432 36788888776554443
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.66 E-value=5.6e-14 Score=135.87 Aligned_cols=289 Identities=12% Similarity=0.028 Sum_probs=183.6
Q ss_pred eecCCCceeeEEEecccccEEE-----EEeCCCCCEEEEEeC-CC--cEEEEECCCCceEEEEecCCce---eEEEeCCC
Q 011711 176 WFCGEGFTMLAKLEGHKKAVSG-----IALPLRSDKLYSGSR-DG--TVQLWDCHTGQSASVINLGAEV---GSLICEGP 244 (479)
Q Consensus 176 w~~~~~~~~~~~~~~H~~~V~~-----l~~s~~~~~l~s~s~-Dg--~v~vwd~~~~~~~~~~~~~~~~---~~~~~~~~ 244 (479)
++..++ ..+..+..|...... .+|+|||++|+.++. ++ .|.+||+.+++........... ..+.++++
T Consensus 15 ~~~~~g-~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~ 93 (388)
T 3pe7_A 15 QDASTG-AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD 93 (388)
T ss_dssp ECTTTC-CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS
T ss_pred ecCCCC-cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC
Confidence 455555 667778888776666 889999999999887 66 4888899998877666544332 35667888
Q ss_pred EEEEE-cCCeEEEEEcCCCceEEe-cCCCccEEEEE--EcCC--EEEEE----------------------eCCCcEEEE
Q 011711 245 WVFVG-MPNVVKAWHIESSAEFSL-DGPVGEVYSMV--VANE--MLFAG----------------------AQDGNILVW 296 (479)
Q Consensus 245 ~l~~~-~~~~i~v~~~~~~~~~~~-~~~~~~v~~~~--~~~~--~l~~g----------------------~~dg~i~iw 296 (479)
.|+.. .+..+.+||+.+++...+ ..+...+.... ++++ .++.. ..+..|.+|
T Consensus 94 ~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (388)
T 3pe7_A 94 ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV 173 (388)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence 77655 567999999999886543 33344343333 3555 44422 234679999
Q ss_pred EccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEEeCC------CeEEEEECCCCcEEEEEeCCCC--CcEEEEEc
Q 011711 297 KGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMD------NTIRVWDLDTLEAVMTLNGHTD--APMSLLCW 365 (479)
Q Consensus 297 d~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~d------g~I~iwd~~~~~~~~~~~~h~~--~v~~~~~~ 365 (479)
|+.++. ...+..+...+..+.|+ ++.|+..+.+ ..|.++|+.+++. ..+..+.. .+....++
T Consensus 174 d~~~g~------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~s 246 (388)
T 3pe7_A 174 DLKTGE------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWV 246 (388)
T ss_dssp ETTTCC------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEEC
T ss_pred ECCCCc------eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceEC
Confidence 988764 23334456677888885 5667766653 3788888876554 34444442 35566666
Q ss_pred --CCEEEEEeC-CC----eEEEEEcCCCcceEEeccccCccceEEEe---eeeCCCCCcEEEEE--------eCCCeEEE
Q 011711 366 --DQYLLSCSL-DN----TIKVWIMTEEGNLEVAYTHNEDHGVLALG---GLNDPDGNPVLICS--------CNDDSVHL 427 (479)
Q Consensus 366 --~~~l~s~s~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~s~--------~~dg~v~i 427 (479)
++.|+..+. ++ .|++||+.+++...... ... ....... ..++|+|+.++++. ..+..|++
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~ 324 (388)
T 3pe7_A 247 PDGSALVYVSYLKGSPDRFIYSADPETLENRQLTS-MPA-CSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYV 324 (388)
T ss_dssp TTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEE-ECC-EEEEEECTTSSEEEEEECCC------------CCCCEEEE
T ss_pred CCCCEEEEEecCCCCCcceEEEEecCCCceEEEEc-CCC-ceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEE
Confidence 666654433 22 39999998876432221 111 0000000 13468998555543 45678999
Q ss_pred eecCCCceeeeeeccC-----------ceEEEEECCCc-eE-EEEcCCCcEEEEEeccCC
Q 011711 428 YELPSFMERGRIFSRR-----------EVRVIETGPDG-LF-FTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 428 wd~~~~~~~~~~~~~~-----------~v~~l~~s~~g-~l-~sg~~dg~v~vw~~~~~~ 474 (479)
||+.+++......+.. .+..++|+||| .| +++..+|...||.+.-..
T Consensus 325 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 325 FNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp EETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred EeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 9999876644333443 47889999999 44 456668888888876543
No 166
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.66 E-value=3.9e-12 Score=128.27 Aligned_cols=303 Identities=14% Similarity=0.094 Sum_probs=206.2
Q ss_pred CeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECC--CCceEEEEecCCceeEE
Q 011711 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCH--TGQSASVINLGAEVGSL 239 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~--~~~~~~~~~~~~~~~~~ 239 (479)
..+++...++.|.++|..++ +.+..+... ..+..+.|+|||+++++++.|+.|.+||+. +++.+..+..+.....+
T Consensus 168 ~~~V~~~~~~~V~viD~~t~-~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~i 245 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTY-EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI 245 (567)
T ss_dssp EEEEEETTTTEEEEEETTTC-CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred eEEEEeCCCCeEEEEECCCC-eEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCcee
Confidence 35677788999999999988 777777643 356789999999999999999999999996 88888888876655544
Q ss_pred E------eCCCEEEEE--cCCeEEEEEcCCCceEEecC-----------C-CccEEEEEEcCC---EEEEEeCCCcEEEE
Q 011711 240 I------CEGPWVFVG--MPNVVKAWHIESSAEFSLDG-----------P-VGEVYSMVVANE---MLFAGAQDGNILVW 296 (479)
Q Consensus 240 ~------~~~~~l~~~--~~~~i~v~~~~~~~~~~~~~-----------~-~~~v~~~~~~~~---~l~~g~~dg~i~iw 296 (479)
. ++|++++++ .++.+.++|..+.+.+.... | ...+..+..+++ .++....+|.|.++
T Consensus 246 a~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~v 325 (567)
T 1qks_A 246 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV 325 (567)
T ss_dssp EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred EEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEE
Confidence 3 368888775 57999999998887753211 1 225777777765 56666778999999
Q ss_pred EccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEe-CCCeEEEEECCCCcEEEEEeC-----CCCCcEEEEE-cCC
Q 011711 297 KGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGS-MDNTIRVWDLDTLEAVMTLNG-----HTDAPMSLLC-WDQ 367 (479)
Q Consensus 297 d~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~-----h~~~v~~~~~-~~~ 367 (479)
|...... .. ...+ ........+.|+ +++++++. .+++|.++|+.+++.+..+.. |.+.-..+.. .+.
T Consensus 326 d~~~~~~--~~-v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g 401 (567)
T 1qks_A 326 DYTDLNN--LK-TTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG 401 (567)
T ss_dssp ETTCSSE--EE-EEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTE
T ss_pred ecCCCcc--ce-eeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCC
Confidence 9866432 11 1222 223456677786 77776655 678999999999998887764 4332333322 233
Q ss_pred -EEEEEe-CCCeEEEEEcCC-------CcceEEeccccCccceEEEeeeeCCCCCcEEEEEeC------CCeEEEeecCC
Q 011711 368 -YLLSCS-LDNTIKVWIMTE-------EGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCN------DDSVHLYELPS 432 (479)
Q Consensus 368 -~l~s~s-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~------dg~v~iwd~~~ 432 (479)
..+++. .++.|.++|..+ .+.+..+.........+. .+|+++.+.+.... .++|.++|+.+
T Consensus 402 ~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~----~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~ 477 (567)
T 1qks_A 402 PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIK----THPNSQYLYVDATLNPEAEISGSVAVFDIKA 477 (567)
T ss_dssp EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE----CCTTCSEEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEE----eCCCCCeEEEecCCCCCcccCceEEEEECCc
Confidence 444443 468999999987 344444443322211122 36999844443311 35999999987
Q ss_pred C-----cee-eeee---------ccCceEEEEECCCc--eEEEE-c---CCCcEEEEEeccCC
Q 011711 433 F-----MER-GRIF---------SRREVRVIETGPDG--LFFTG-D---GTGMLSVWKILAKP 474 (479)
Q Consensus 433 ~-----~~~-~~~~---------~~~~v~~l~~s~~g--~l~sg-~---~dg~v~vw~~~~~~ 474 (479)
. ... ..+. ....+..+.|+|+| .+++. + .++.|.|+|..+.+
T Consensus 478 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 478 MTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp CCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred ccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCce
Confidence 7 222 2221 14578999999999 44442 2 47999999987654
No 167
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.63 E-value=8.8e-13 Score=127.05 Aligned_cols=292 Identities=10% Similarity=0.036 Sum_probs=198.0
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEeccc---------ccEE-EEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHK---------KAVS-GIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVI 230 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~---------~~V~-~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~ 230 (479)
.+.+..++.++.|..+|.+++ +.+..+.... ..+. .+. .++..++.++.++.|..+|.++|+.+...
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDG-KEIWSVSLAEKDGWFSKEPALLSGGVT--VSGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTC-CEEEEEECCC---CCSCCCCCEEEEEE--EETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCC-ceeeeecCccccccccccCcccccCce--EeCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 556777777899999999988 5565554421 2232 222 24667888999999999999999999888
Q ss_pred ecCCcee--EEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccE------EEEEEcCCEEEEEeCCCcEEEEEccCCC
Q 011711 231 NLGAEVG--SLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEV------YSMVVANEMLFAGAQDGNILVWKGIPNT 302 (479)
Q Consensus 231 ~~~~~~~--~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v------~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 302 (479)
.....+. .+..++.+++...++.+..+|..+++..-.......+ .......+.+++++.++.|..+|..+++
T Consensus 130 ~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~ 209 (376)
T 3q7m_A 130 KVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQ 209 (376)
T ss_dssp ECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCC
T ss_pred eCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCc
Confidence 7664432 2334565556667899999999988875332222221 2334446688889999999999998775
Q ss_pred CCcccceeeecCCC--CC--------e-EEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCCEEEE
Q 011711 303 QNPFQLAALLKGHT--RP--------V-TCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLS 371 (479)
Q Consensus 303 ~~~~~~~~~~~~h~--~~--------i-~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s 371 (479)
. ........ .. + ......++.++.++.++.+..+|.++++.+..... .....+...+..++.
T Consensus 210 ~-----~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~l~~ 282 (376)
T 3q7m_A 210 M-----IWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIVDGNRIYL 282 (376)
T ss_dssp E-----EEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEEETTEEEE
T ss_pred E-----EEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceEECCEEEE
Confidence 3 21111110 00 1 11223478888899999999999999998877663 334566667889999
Q ss_pred EeCCCeEEEEEcCCCcceEEeccccC-ccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec-cCceEEEE
Q 011711 372 CSLDNTIKVWIMTEEGNLEVAYTHNE-DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS-RREVRVIE 449 (479)
Q Consensus 372 ~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~l~ 449 (479)
++.++.|..+|..+++.+........ ......+ .+ . .|+.++.+|.|+.+|..+++.+..... ...+....
T Consensus 283 ~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~-----~~-~-~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~ 355 (376)
T 3q7m_A 283 VDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL-----YN-G-NLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEP 355 (376)
T ss_dssp EETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE-----ET-T-EEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCC
T ss_pred EcCCCeEEEEECCCCcEEEeecccCCCcccCCEE-----EC-C-EEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCC
Confidence 99999999999998876655442211 1222222 12 3 577788899999999999998877664 33333222
Q ss_pred ECCCceEEEEcCCCcEEEEE
Q 011711 450 TGPDGLFFTGDGTGMLSVWK 469 (479)
Q Consensus 450 ~s~~g~l~sg~~dg~v~vw~ 469 (479)
...++.|+.++.+|.|..|+
T Consensus 356 ~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 356 VAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEETTEEEEEBTTSCEEEEE
T ss_pred EEECCEEEEEeCCCEEEEEe
Confidence 22356888899999999987
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.62 E-value=5.3e-13 Score=126.14 Aligned_cols=261 Identities=11% Similarity=0.025 Sum_probs=169.7
Q ss_pred cccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEec--C
Q 011711 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLD--G 269 (479)
Q Consensus 192 ~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~--~ 269 (479)
-+.|.+|+++++|+++++.+.++.+.+++......... ....+ ..++.|.+||..+++..... .
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~-~~~~~-------------~~~~~i~~~d~~~g~~~~~~~~~ 88 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQ-RGLGP-------------IEEDTILVIDPNNAEILQSSGKN 88 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSC-GGGCS-------------CCSCCEEEECTTTCCEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecc-ccccc-------------ccCCcEEEEECCCCeEEeccCCC
Confidence 36799999999999999988886544433322111100 00000 02455666666655554332 3
Q ss_pred CCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeee---------cCCCCCeEEEEEc---CCEEEEEe-C
Q 011711 270 PVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALL---------KGHTRPVTCLAVG---GKRLYSGS-M 334 (479)
Q Consensus 270 ~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~---------~~h~~~i~~l~~~---~~~l~sgs-~ 334 (479)
+......++++++ ++++...++.|++||...... .+..+ ..+......++++ +.++++.+ .
T Consensus 89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~----~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~ 164 (329)
T 3fvz_A 89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEG----PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC 164 (329)
T ss_dssp TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSC----CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS
T ss_pred ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeE----EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC
Confidence 3456888999876 677777789999999755421 12222 3445568899996 45566665 5
Q ss_pred CCeEEEEECCCCcEEEEEeCCC----------CCcEEEEEc---CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccce
Q 011711 335 DNTIRVWDLDTLEAVMTLNGHT----------DAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGV 401 (479)
Q Consensus 335 dg~I~iwd~~~~~~~~~~~~h~----------~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 401 (479)
++.|++|| .+++.+..+.... ..+..++++ +.++++...++.|++||..+++.+..+.........
T Consensus 165 ~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~ 243 (329)
T 3fvz_A 165 NSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNV 243 (329)
T ss_dssp CCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCE
T ss_pred CCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCc
Confidence 89999999 5677777774222 236777776 455666677889999999877766655432222111
Q ss_pred EEEeeeeCC------CCCcEEEEEeCCCeEEEeecCCCceeeeee----ccCceEEEEECCCc-eEEEEcCCCcEEEEEe
Q 011711 402 LALGGLNDP------DGNPVLICSCNDDSVHLYELPSFMERGRIF----SRREVRVIETGPDG-LFFTGDGTGMLSVWKI 470 (479)
Q Consensus 402 ~~~~~~~~~------~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~----~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~ 470 (479)
. ...++| +|+ +.++...+..|++||..+++.+..+. +...+..++++|+| ++++...++.|++|++
T Consensus 244 ~--~~~~~pg~~~~~~g~-~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 244 F--AISYIPGFLFAVNGK-PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp E--EEEEETTEEEEEECC-CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred c--eeeecCCEEEEeCCC-EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence 1 222346 222 22222345589999999998888763 35668999999999 8889999999999998
Q ss_pred ccCC
Q 011711 471 LAKP 474 (479)
Q Consensus 471 ~~~~ 474 (479)
....
T Consensus 321 ~~~~ 324 (329)
T 3fvz_A 321 TEKM 324 (329)
T ss_dssp EECS
T ss_pred Cccc
Confidence 7643
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.62 E-value=1.9e-12 Score=119.57 Aligned_cols=238 Identities=13% Similarity=0.163 Sum_probs=160.8
Q ss_pred ecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEec
Q 011711 189 EGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLD 268 (479)
Q Consensus 189 ~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~ 268 (479)
.+|-..+.+++++++++++++.+.++.|.+||.. ++.+..+.... ...
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~-------------------------------~~~ 73 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG-------------------------------KRD 73 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS-------------------------------SST
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccC-------------------------------CCc
Confidence 3566789999999999988888899999999977 55544432100 001
Q ss_pred CCCccEEEEEEc-CC-EEEEEeC--CCcEEEEEccCCCCCcccceeeec-CCCCCeEEEEEc--CCEEEEEeCCCeEEEE
Q 011711 269 GPVGEVYSMVVA-NE-MLFAGAQ--DGNILVWKGIPNTQNPFQLAALLK-GHTRPVTCLAVG--GKRLYSGSMDNTIRVW 341 (479)
Q Consensus 269 ~~~~~v~~~~~~-~~-~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~-~h~~~i~~l~~~--~~~l~sgs~dg~I~iw 341 (479)
.+...+..+++. ++ .++++.. ++.|.+||.. +. ....+. .+...+.+++++ ++++++...++.|.+|
T Consensus 74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~-g~-----~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 147 (286)
T 1q7f_A 74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQ-----FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIF 147 (286)
T ss_dssp TCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SC-----EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred ccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC-Cc-----EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 234567888883 44 5555553 8899999943 32 123232 344578899996 6777777778999999
Q ss_pred ECCCCcEEEEEe--CCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEecccc--CccceEEEeeeeCCCCCcE
Q 011711 342 DLDTLEAVMTLN--GHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHN--EDHGVLALGGLNDPDGNPV 415 (479)
Q Consensus 342 d~~~~~~~~~~~--~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 415 (479)
|.. ++.+..+. .+...+..++++ ++++++...++.|++||.. ++.+..+.... .... .+..+++|. +
T Consensus 148 ~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~----~i~~d~~G~-l 220 (286)
T 1q7f_A 148 DQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPI----GVGINSNGE-I 220 (286)
T ss_dssp CTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEE----EEEECTTCC-E
T ss_pred cCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCc----EEEECCCCC-E
Confidence 964 56666664 344567888887 5566666778999999974 33333333221 1222 233468887 7
Q ss_pred EEEEeCCC-eEEEeecCCCceeeeeec---cCceEEEEECCCc-eEEEEcCCCcEEEEEeccC
Q 011711 416 LICSCNDD-SVHLYELPSFMERGRIFS---RREVRVIETGPDG-LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 416 l~s~~~dg-~v~iwd~~~~~~~~~~~~---~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~ 473 (479)
+++...++ .|.+||. +++.+..+.. ...+..++++|+| ++++ +.|+.|++|++...
T Consensus 221 ~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 221 LIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 77776675 9999996 4555555543 2347899999999 5555 57999999998653
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.62 E-value=1.4e-13 Score=133.29 Aligned_cols=254 Identities=11% Similarity=-0.005 Sum_probs=151.5
Q ss_pred eEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCcee--------------
Q 011711 172 FWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVG-------------- 237 (479)
Q Consensus 172 ~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~-------------- 237 (479)
.|.+|++.++ +......++......+.|+|||++|+.++.++.|.+||+.+++............
T Consensus 61 ~l~~~d~~~~-~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 139 (396)
T 3c5m_A 61 NYYLLNLETQ-QAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKL 139 (396)
T ss_dssp EEEEEETTTT-EEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEE
T ss_pred eEEEEECCCC-cEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcc
Confidence 4556666655 3332222222223347899999999999999999999999988766665433211
Q ss_pred --------EEEeCCCEEEE------EcCCeEEEEEcCCCceEEecCCCccEEEEEEcC-C--EEEEEeCC------CcEE
Q 011711 238 --------SLICEGPWVFV------GMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN-E--MLFAGAQD------GNIL 294 (479)
Q Consensus 238 --------~~~~~~~~l~~------~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~-~--~l~~g~~d------g~i~ 294 (479)
.+.++++.++. ..+..|.+||+.+++...+..+...+..+.|++ + .|+..+.+ ..|.
T Consensus 140 ~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~ 219 (396)
T 3c5m_A 140 VGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMW 219 (396)
T ss_dssp EEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCE
T ss_pred ccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEE
Confidence 01112332221 244589999999988766666677889999998 4 46555543 3688
Q ss_pred EEEccCCCCCcccceeeecCC--CCCeEEEEEc--CCEEEEEeCC-----CeEEEEECCCCcEEEEEeCCCCCcEEEEE-
Q 011711 295 VWKGIPNTQNPFQLAALLKGH--TRPVTCLAVG--GKRLYSGSMD-----NTIRVWDLDTLEAVMTLNGHTDAPMSLLC- 364 (479)
Q Consensus 295 iwd~~~~~~~~~~~~~~~~~h--~~~i~~l~~~--~~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~h~~~v~~~~~- 364 (479)
+||+..+.. ..+..+ ...+..+.|+ ++.|+.++.+ +.|++||+.+++........ ........
T Consensus 220 ~~d~~~~~~------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~s~~ 292 (396)
T 3c5m_A 220 LVNEDGSNV------RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-PCSHLMSNF 292 (396)
T ss_dssp EEETTSCCC------EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-SEEEEEECS
T ss_pred EEECCCCce------eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-CCCCCccCC
Confidence 888765432 222222 2347778886 7766666543 45999999988764433221 11133344
Q ss_pred cCCEEEEEe----------------CCCeEEEEEcCCCcceEEeccccCccc-------eEEEeeeeCCCCCcEEEEEeC
Q 011711 365 WDQYLLSCS----------------LDNTIKVWIMTEEGNLEVAYTHNEDHG-------VLALGGLNDPDGNPVLICSCN 421 (479)
Q Consensus 365 ~~~~l~s~s----------------~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~s~~~ 421 (479)
+++++++++ .+..|++||+.++... .+..+..... .......++|+|+.+++++..
T Consensus 293 dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~ 371 (396)
T 3c5m_A 293 DGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDF 371 (396)
T ss_dssp SSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred CCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecC
Confidence 567777654 3478999999876543 3333222100 001123457999866666655
Q ss_pred CCeEEEe--ecCCCc
Q 011711 422 DDSVHLY--ELPSFM 434 (479)
Q Consensus 422 dg~v~iw--d~~~~~ 434 (479)
++...+| ++.+++
T Consensus 372 ~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 372 EGVPAIYIADVPESY 386 (396)
T ss_dssp TSSCEEEEEECCTTC
T ss_pred CCCceEEEEEEcccc
Confidence 6655555 444443
No 171
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.59 E-value=5.8e-13 Score=140.11 Aligned_cols=270 Identities=11% Similarity=0.084 Sum_probs=175.7
Q ss_pred cEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCc------e--eEEEeCCCEEEEEcC----------CeEE
Q 011711 194 AVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE------V--GSLICEGPWVFVGMP----------NVVK 255 (479)
Q Consensus 194 ~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~------~--~~~~~~~~~l~~~~~----------~~i~ 255 (479)
...+++|+||+++++++ |++|++||+.+++....+..... . ..++++|+.++.+.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 45688999999999886 89999999999998777664431 1 355679998887654 6788
Q ss_pred EEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCe--------------
Q 011711 256 AWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPV-------------- 319 (479)
Q Consensus 256 v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i-------------- 319 (479)
+||+.+++...+..+...+...+|+|+ .|+.+ .++.|++|++.++... ..+..++...+
T Consensus 96 ~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~----~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 96 IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSY----RITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCE----ECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceE----EEcCCCCccceecCcccccccchhc
Confidence 999999998877778889999999998 66666 5789999998776531 11122332222
Q ss_pred ---EEEEEc--CCEEEEEeCCC------------------------------------eEEEEECCC---Cc--EEEEEe
Q 011711 320 ---TCLAVG--GKRLYSGSMDN------------------------------------TIRVWDLDT---LE--AVMTLN 353 (479)
Q Consensus 320 ---~~l~~~--~~~l~sgs~dg------------------------------------~I~iwd~~~---~~--~~~~~~ 353 (479)
..+.|+ |+.|+.++.|. +|++||+.+ ++ ....+.
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 246775 88888765321 588899998 73 233443
Q ss_pred C------CCCCcEEEEEc--CCEEEEEeC----CCeEEEEEcCCCc----c--eEEe--ccccCccce-EEEeeeeCCCC
Q 011711 354 G------HTDAPMSLLCW--DQYLLSCSL----DNTIKVWIMTEEG----N--LEVA--YTHNEDHGV-LALGGLNDPDG 412 (479)
Q Consensus 354 ~------h~~~v~~~~~~--~~~l~s~s~----dg~i~iwd~~~~~----~--~~~~--~~~~~~~~~-~~~~~~~~~~~ 412 (479)
. |...+..+.|+ ++.++.... +..|.+||+.+++ + ...+ ..+...+.. ......|+|||
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC
Confidence 2 66667777776 565554432 3479999998876 1 1111 222222210 01123457999
Q ss_pred CcEEEEEe-CCC--eEEEeecCCCceeeeeeccCceEEEE-ECCCc-eEEEEcC----CCcEEEEEec
Q 011711 413 NPVLICSC-NDD--SVHLYELPSFMERGRIFSRREVRVIE-TGPDG-LFFTGDG----TGMLSVWKIL 471 (479)
Q Consensus 413 ~~~l~s~~-~dg--~v~iwd~~~~~~~~~~~~~~~v~~l~-~s~~g-~l~sg~~----dg~v~vw~~~ 471 (479)
+.+++..+ .+| .|++||+.+++..........+..+. ++ ++ +++++.. .+...||.+.
T Consensus 331 ~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~~d-~~~i~f~~~~~~~~~~~~~ly~v~ 397 (740)
T 4a5s_A 331 NSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALT-SDYLYYISNEYKGMPGGRNLYKIQ 397 (740)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEEEC-SSEEEEEESCGGGCTTCBEEEEEE
T ss_pred CEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEEEe-CCEEEEEEecCCCCCceeEEEEEE
Confidence 96552443 444 58888888776654444455566554 44 33 5555554 4556677664
No 172
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.57 E-value=1.8e-13 Score=132.53 Aligned_cols=282 Identities=10% Similarity=-0.055 Sum_probs=171.8
Q ss_pred EEeecCCCceeeEEEeccccc-----EEEEEeCCCCCEEEEEeCC---CcEEEEECCCCceEEEEecCCce---eEEEeC
Q 011711 174 HSWFCGEGFTMLAKLEGHKKA-----VSGIALPLRSDKLYSGSRD---GTVQLWDCHTGQSASVINLGAEV---GSLICE 242 (479)
Q Consensus 174 ~vw~~~~~~~~~~~~~~H~~~-----V~~l~~s~~~~~l~s~s~D---g~v~vwd~~~~~~~~~~~~~~~~---~~~~~~ 242 (479)
...|..++ ..+..+..+... +.+++|+|||++|+....+ ..|.+||+.+++........... ..+.++
T Consensus 13 ~~~d~~~g-~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spd 91 (396)
T 3c5m_A 13 TFVDSDTQ-VKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTD 91 (396)
T ss_dssp EEECTTTC-CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTT
T ss_pred eeecCCCC-cceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCC
Confidence 34456666 455666555433 7788999999998877543 47888999988765544433332 345678
Q ss_pred CCEEE-EEcCCeEEEEEcCCCceEEecC-CCccEEE---E----------------EEcCC--EEEEE-----eCCCcEE
Q 011711 243 GPWVF-VGMPNVVKAWHIESSAEFSLDG-PVGEVYS---M----------------VVANE--MLFAG-----AQDGNIL 294 (479)
Q Consensus 243 ~~~l~-~~~~~~i~v~~~~~~~~~~~~~-~~~~v~~---~----------------~~~~~--~l~~g-----~~dg~i~ 294 (479)
++.|+ ++.++.|.+|++.+++...+.. +...... + .++++ .++.. ..+..|+
T Consensus 92 g~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~ 171 (396)
T 3c5m_A 92 ERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLI 171 (396)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEE
T ss_pred CCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEE
Confidence 88775 5577789999999887654332 3221111 1 12222 22211 3556799
Q ss_pred EEEccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEEeCC------CeEEEEECCCCcEEEEEeCCC--CCcEEEE
Q 011711 295 VWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMD------NTIRVWDLDTLEAVMTLNGHT--DAPMSLL 363 (479)
Q Consensus 295 iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~d------g~I~iwd~~~~~~~~~~~~h~--~~v~~~~ 363 (479)
+||+.++.. ..+..+...+..+.|+ ++.++..+.+ ..|.+||+.+++.. .+..+. ..+..+.
T Consensus 172 ~~d~~~g~~------~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 172 KVDIETGEL------EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEF 244 (396)
T ss_dssp EEETTTCCE------EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEE
T ss_pred EEECCCCcE------EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceE
Confidence 999877642 2223456678888885 4556665543 46889998766543 333332 2355566
Q ss_pred Ec--CCEEEEEeCC-----CeEEEEEcCCCcceEEeccccCccceEEEeeeeCC-CCCcEEEEEe---------------
Q 011711 364 CW--DQYLLSCSLD-----NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDP-DGNPVLICSC--------------- 420 (479)
Q Consensus 364 ~~--~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~--------------- 420 (479)
++ +++|+.++.+ +.|++||+.+++..... .... .. ..++| +|+ +++.++
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~-~~-----~~~s~~dg~-~l~~~~~~~p~~~~~~~~~~~ 316 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM-VMPP-CS-----HLMSNFDGS-LMVGDGCDAPVDVADADSYNI 316 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE-ECCS-EE-----EEEECSSSS-EEEEEECCC----------CC
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee-eCCC-CC-----CCccCCCCc-eEEEecCCcceeecccccccc
Confidence 66 6767666543 45999999876543322 1111 11 34568 998 555543
Q ss_pred -CCCeEEEeecCCCceeeeeeccC-----------ceEEEEECCCc-eEEE-EcCCCcEEEEEec
Q 011711 421 -NDDSVHLYELPSFMERGRIFSRR-----------EVRVIETGPDG-LFFT-GDGTGMLSVWKIL 471 (479)
Q Consensus 421 -~dg~v~iwd~~~~~~~~~~~~~~-----------~v~~l~~s~~g-~l~s-g~~dg~v~vw~~~ 471 (479)
.+..|++||+.+++......+.. .+..+.|+||| .|+. +..++...+|.+.
T Consensus 317 ~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 317 ENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp CCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 34789999998876543222332 25678999999 5554 4456776777665
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.56 E-value=2e-11 Score=115.25 Aligned_cols=243 Identities=7% Similarity=0.021 Sum_probs=151.3
Q ss_pred eeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCc
Q 011711 184 MLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSA 263 (479)
Q Consensus 184 ~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~ 263 (479)
....+..+...+.+++|++++++++++..++.|.+||..+++......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~-------------------------------- 83 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV-------------------------------- 83 (333)
T ss_dssp EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE--------------------------------
T ss_pred eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee--------------------------------
Confidence 344566677778999999999988888899999999998876543221
Q ss_pred eEEecCCCccEEEEEEcCC--EEEEEeCC----CcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeC-
Q 011711 264 EFSLDGPVGEVYSMVVANE--MLFAGAQD----GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSM- 334 (479)
Q Consensus 264 ~~~~~~~~~~v~~~~~~~~--~l~~g~~d----g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~- 334 (479)
.+...+.+++++++ ++++...+ +.|.+||..++... .......+...+.++.++ ++++++...
T Consensus 84 -----~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 155 (333)
T 2dg1_A 84 -----SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ---DIIEDLSTAYCIDDMVFDSKGGFYFTDFRG 155 (333)
T ss_dssp -----CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE---EEECSSSSCCCEEEEEECTTSCEEEEECCC
T ss_pred -----CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE---EEEccCccCCcccceEECCCCCEEEEeccc
Confidence 13456888888877 44444444 58999998765421 011111244578899997 555555443
Q ss_pred -----CCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEE-EEeCCCeEEEEEcCCC-cceEEe-----ccccCccc
Q 011711 335 -----DNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLL-SCSLDNTIKVWIMTEE-GNLEVA-----YTHNEDHG 400 (479)
Q Consensus 335 -----dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~-s~s~dg~i~iwd~~~~-~~~~~~-----~~~~~~~~ 400 (479)
.+.|..+|..+++... +..+...+..+.++ ++.|+ +.+.++.|.+||+.+. ..+..+ ......
T Consensus 156 ~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-- 232 (333)
T 2dg1_A 156 YSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-- 232 (333)
T ss_dssp BTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS--
T ss_pred cccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC--
Confidence 3567777776655433 22223346677776 55554 4456889999999643 322211 111110
Q ss_pred eEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccC-------ceEEEEECCCc-eEEEEcCCC----cEEEE
Q 011711 401 VLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRR-------EVRVIETGPDG-LFFTGDGTG----MLSVW 468 (479)
Q Consensus 401 ~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-------~v~~l~~s~~g-~l~sg~~dg----~v~vw 468 (479)
...-.+..+++|. ++++...++.|.+||. +++.+..+.... .+.+++|+||+ .|+.++.+| .-.||
T Consensus 233 ~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~ 310 (333)
T 2dg1_A 233 EGPDSCCIDSDDN-LYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLY 310 (333)
T ss_dssp SEEEEEEEBTTCC-EEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEE
T ss_pred CCCCceEECCCCC-EEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEE
Confidence 1222344568888 6666667889999998 455555554322 58999999997 555444442 34455
Q ss_pred Eec
Q 011711 469 KIL 471 (479)
Q Consensus 469 ~~~ 471 (479)
.+.
T Consensus 311 ~~~ 313 (333)
T 2dg1_A 311 TVN 313 (333)
T ss_dssp EEE
T ss_pred EEe
Confidence 544
No 174
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.55 E-value=9.1e-12 Score=117.54 Aligned_cols=270 Identities=9% Similarity=-0.051 Sum_probs=176.9
Q ss_pred CCCCeEEEeecCCCceeeEEEe------cccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEE-
Q 011711 168 DECRFWHSWFCGEGFTMLAKLE------GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI- 240 (479)
Q Consensus 168 ~~d~~i~vw~~~~~~~~~~~~~------~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~- 240 (479)
..++.|.++|.+++ +....+. ........+++. +++..++...++.|.+||..+++.+..+........+.
T Consensus 14 ~~~~~l~~~d~~t~-~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~ 91 (328)
T 3dsm_A 14 YSNATLSYYDPATC-EVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHF 91 (328)
T ss_dssp SCCBEEEEEETTTT-EEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEE
T ss_pred CCCceEEEEECCCC-EEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEE
Confidence 44799999999988 4444331 112346777774 45556666667999999999999998887555555444
Q ss_pred -eCCCEEEEE-cCCeEEEEEcCCCceEE-ecCCC-----ccEEEEEEcCCEEEEEe--CCCcEEEEEccCCCCCccccee
Q 011711 241 -CEGPWVFVG-MPNVVKAWHIESSAEFS-LDGPV-----GEVYSMVVANEMLFAGA--QDGNILVWKGIPNTQNPFQLAA 310 (479)
Q Consensus 241 -~~~~~l~~~-~~~~i~v~~~~~~~~~~-~~~~~-----~~v~~~~~~~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~~ 310 (479)
.++.+.++. .++.|.+||..+.+... ..... .....+++..+.++++. .++.|.++|..++.. ..
T Consensus 92 ~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~-----~~ 166 (328)
T 3dsm_A 92 LSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKV-----VD 166 (328)
T ss_dssp EETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEE-----EE
T ss_pred eCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeE-----EE
Confidence 466544444 58999999999987653 22111 14456666666666665 488999999987642 33
Q ss_pred eecCCCCCeEEEEEc--CCEEEEEeCC----------CeEEEEECCCCcEEEEEeCCC-CCcEEEEEc--CCEEEEEeCC
Q 011711 311 LLKGHTRPVTCLAVG--GKRLYSGSMD----------NTIRVWDLDTLEAVMTLNGHT-DAPMSLLCW--DQYLLSCSLD 375 (479)
Q Consensus 311 ~~~~h~~~i~~l~~~--~~~l~sgs~d----------g~I~iwd~~~~~~~~~~~~h~-~~v~~~~~~--~~~l~s~s~d 375 (479)
.+... .....+.++ +++++++..+ +.|.++|..+++....+.... .....++++ ++.|+.+..
T Consensus 167 ~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~- 244 (328)
T 3dsm_A 167 ELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN- 244 (328)
T ss_dssp EEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-
T ss_pred EEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-
Confidence 33322 233566775 5555554443 789999999999888776432 357788887 677777655
Q ss_pred CeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEE----eCCCeEEEeecCCCceeeeeeccCceEEEEE
Q 011711 376 NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICS----CNDDSVHLYELPSFMERGRIFSRREVRVIET 450 (479)
Q Consensus 376 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~----~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~ 450 (479)
.|.+||..+.+.......... ......+..+|++..++++. ..++.|.+||.. ++.+..+........++|
T Consensus 245 -~v~~~d~~t~~~~~~~~~~~~--~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~ 319 (328)
T 3dsm_A 245 -DIWRMPVEADRVPVRPFLEFR--DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW 319 (328)
T ss_dssp -SEEEEETTCSSCCSSCSBCCC--SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred -EEEEEECCCCceeeeeeecCC--CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence 899999987654311111110 11122233468555577777 678999999998 888888766555555555
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.55 E-value=1.2e-12 Score=135.96 Aligned_cols=282 Identities=9% Similarity=-0.068 Sum_probs=177.6
Q ss_pred EEEecccccEEEEEeCCCCCEEEEE--eCCCcEEEEECCCCceEEEEecC-Ccee---------E--EE--eCCCE-EEE
Q 011711 186 AKLEGHKKAVSGIALPLRSDKLYSG--SRDGTVQLWDCHTGQSASVINLG-AEVG---------S--LI--CEGPW-VFV 248 (479)
Q Consensus 186 ~~~~~H~~~V~~l~~s~~~~~l~s~--s~Dg~v~vwd~~~~~~~~~~~~~-~~~~---------~--~~--~~~~~-l~~ 248 (479)
..+.+|...|..++|+++.-++++. +.++...||....+.....+... ..+. . .. ++++. |+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 3466799999999999887777777 56889999996544444444332 2222 2 33 57877 766
Q ss_pred EcC--CeEEEEEcC--C-CceEEecC-----CCccEEEEEEcCC--EEEEEeCC----------CcEEEEEccCCCCCcc
Q 011711 249 GMP--NVVKAWHIE--S-SAEFSLDG-----PVGEVYSMVVANE--MLFAGAQD----------GNILVWKGIPNTQNPF 306 (479)
Q Consensus 249 ~~~--~~i~v~~~~--~-~~~~~~~~-----~~~~v~~~~~~~~--~l~~g~~d----------g~i~iwd~~~~~~~~~ 306 (479)
+.+ ..|.++++. + +....+.. +...+..++|+|+ .|+.++.+ ..|++||+.+......
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 654 566666666 3 55555554 5678889999988 77777766 5899999877210000
Q ss_pred cceeeec-CCCCCeEEEEEc--CCEEEEEeCC--------CeEEEEECC-CC---cEEEEEeCCCCCcEEEEEc--CCEE
Q 011711 307 QLAALLK-GHTRPVTCLAVG--GKRLYSGSMD--------NTIRVWDLD-TL---EAVMTLNGHTDAPMSLLCW--DQYL 369 (479)
Q Consensus 307 ~~~~~~~-~h~~~i~~l~~~--~~~l~sgs~d--------g~I~iwd~~-~~---~~~~~~~~h~~~v~~~~~~--~~~l 369 (479)
.....+. .+...+..++|+ |++|+.++.+ ..|++||+. ++ +.......|...+..+.|+ ++++
T Consensus 177 ~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~ 256 (662)
T 3azo_A 177 SAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLI 256 (662)
T ss_dssp GGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEE
T ss_pred CceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEE
Confidence 0123344 455667777886 8888877754 379999999 56 4444445556778888886 6777
Q ss_pred EEEeCCC--eEEEEEcCCCcceEEeccccCccceE-----EEeeeeCCCCCcEEEEEeCCCeEEEe--ecCCCceeeeee
Q 011711 370 LSCSLDN--TIKVWIMTEEGNLEVAYTHNEDHGVL-----ALGGLNDPDGNPVLICSCNDDSVHLY--ELPSFMERGRIF 440 (479)
Q Consensus 370 ~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~s~~~dg~v~iw--d~~~~~~~~~~~ 440 (479)
+++..++ .|.+||+.+++. ..+.......... .....++|++. +++++.. +.++|| |+.+++ ...+.
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~d~~~~~-~~~l~ 332 (662)
T 3azo_A 257 VATDRTGWWNLHRVDPATGAA-TQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK-GAAVLGILDPESGE-LVDAA 332 (662)
T ss_dssp EEECTTSSCEEEEECTTTCCE-EESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS-SSCEEEEEETTTTE-EEECC
T ss_pred EEECCCCCeEEEEEECCCCce-eecccccccccCccccccCceEeEeCCCE-EEEEEEc-CccEEEEEECCCCc-EEEec
Confidence 8888888 566666655443 3333322221100 01122347777 8888887 999999 555555 33333
Q ss_pred -ccCceEEE-EECCCc-eEEEEcCCCcEEEEEec
Q 011711 441 -SRREVRVI-ETGPDG-LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 441 -~~~~v~~l-~~s~~g-~l~sg~~dg~v~vw~~~ 471 (479)
+...+..+ +++++. .+++++.+....+|.+.
T Consensus 333 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d 366 (662)
T 3azo_A 333 GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELD 366 (662)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEE
T ss_pred CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEE
Confidence 35567777 666565 55666666655565543
No 176
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.53 E-value=5e-12 Score=120.98 Aligned_cols=259 Identities=10% Similarity=0.065 Sum_probs=170.9
Q ss_pred CCCCEEEEEe------CCCcEEEEECCCCceEEEEecCCce-eEEEeCCCEEEEEc-----------CCeEEEEEcCCCc
Q 011711 202 LRSDKLYSGS------RDGTVQLWDCHTGQSASVINLGAEV-GSLICEGPWVFVGM-----------PNVVKAWHIESSA 263 (479)
Q Consensus 202 ~~~~~l~s~s------~Dg~v~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~-----------~~~i~v~~~~~~~ 263 (479)
+++++++... .|+.|.+||..+++.+..+..+... ..+.+++++++++. ++.|.+||..+.+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~ 92 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT 92 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence 3556666554 3789999999999998888765443 23445888888764 4679999998877
Q ss_pred eEE-ecC------CCccEEEEEEcCC--EEEEEeC--CCcEEEEEccCCCCCcccceee-ecCCCCCeEEEEE--c-CCE
Q 011711 264 EFS-LDG------PVGEVYSMVVANE--MLFAGAQ--DGNILVWKGIPNTQNPFQLAAL-LKGHTRPVTCLAV--G-GKR 328 (479)
Q Consensus 264 ~~~-~~~------~~~~v~~~~~~~~--~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~-~~~h~~~i~~l~~--~-~~~ 328 (479)
... +.. +......++++++ +|+++.. ++.|.+||+.+.+ .+.. +.. .. ...+.+ + ...
T Consensus 93 ~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~-----~~~~~i~~-~~-~~~v~~~p~~~~~ 165 (361)
T 2oiz_A 93 FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD-----YVEDVTAA-AG-CWSVIPQPNRPRS 165 (361)
T ss_dssp EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE-----EEEEEGGG-TT-EEEEEECTTSSSE
T ss_pred EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc-----EEEEEecC-CC-cceeEEcCCCCee
Confidence 643 211 1234556888877 7777653 6899999998763 2333 322 11 112223 2 467
Q ss_pred EEEEeCCCeEEEEECCC-CcEEEEE------eCCCCCc-EEEEEcCCEEEEEeCCCeEEEEEcCCCcceE--Eecccc--
Q 011711 329 LYSGSMDNTIRVWDLDT-LEAVMTL------NGHTDAP-MSLLCWDQYLLSCSLDNTIKVWIMTEEGNLE--VAYTHN-- 396 (479)
Q Consensus 329 l~sgs~dg~I~iwd~~~-~~~~~~~------~~h~~~v-~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~-- 396 (479)
+++.+.||.+.+|++.. ++..... ..+..++ ......+..++..+.++.|.++|+....... ......
T Consensus 166 ~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~ 245 (361)
T 2oiz_A 166 FMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDE 245 (361)
T ss_dssp EEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHH
T ss_pred EEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcc
Confidence 88899999999999865 5554222 1122221 1123346677777889999999987543221 110000
Q ss_pred --------CccceEEEeeeeCCCCCcEEEEEe----------CCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEE
Q 011711 397 --------EDHGVLALGGLNDPDGNPVLICSC----------NDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFF 457 (479)
Q Consensus 397 --------~~~~~~~~~~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~ 457 (479)
.....+.+ +|+++.++++.. .++.|.+||+.+++.+..+.... +..++|+||| +|+
T Consensus 246 ~~~~~~~p~g~~~~a~----~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~ 320 (361)
T 2oiz_A 246 DKAKNWVPGGYNLVGL----HRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLML 320 (361)
T ss_dssp HHHTTCEECCSSCEEE----ETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEE
T ss_pred ccccccccCCeeEEEE----ecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEE
Confidence 11112333 588886666544 13589999999999999988777 9999999999 777
Q ss_pred EEcCCCcEEEEEeccC
Q 011711 458 TGDGTGMLSVWKILAK 473 (479)
Q Consensus 458 sg~~dg~v~vw~~~~~ 473 (479)
+++. +.|.+||..+.
T Consensus 321 v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 321 TLDG-GNVNVYDISQP 335 (361)
T ss_dssp EECS-SCEEEEECSSS
T ss_pred EeCC-CeEEEEECCCC
Confidence 7776 99999998876
No 177
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.52 E-value=1.4e-11 Score=118.07 Aligned_cols=237 Identities=13% Similarity=0.147 Sum_probs=149.2
Q ss_pred CeEEEeccCCeeEeCCCCCeEEEeecC-CCceeeEEEeccc--ccEEEEEeCCCCCE--EEEEe-------------CCC
Q 011711 153 KNVCYHWLSGNCVKGDECRFWHSWFCG-EGFTMLAKLEGHK--KAVSGIALPLRSDK--LYSGS-------------RDG 214 (479)
Q Consensus 153 ~~~c~~~~~~~~~~g~~d~~i~vw~~~-~~~~~~~~~~~H~--~~V~~l~~s~~~~~--l~s~s-------------~Dg 214 (479)
..+++.+.+..+++++.+ .|.+|++. ++ ++..... |. +.+..++|+|+|++ +++++ .++
T Consensus 43 ~~~a~spdg~~l~~~~~~-~v~~~~~~~~g-~~~~~~~-~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g 119 (365)
T 1jof_A 43 SWMTFDHERKNIYGAAMK-KWSSFAVKSPT-EIVHEAS-HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG 119 (365)
T ss_dssp SEEEECTTSSEEEEEEBT-EEEEEEEEETT-EEEEEEE-EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred cEEEECCCCCEEEEEccc-eEEEEEECCCC-CEEEeeE-eecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence 456777777777777776 99999997 66 4443322 21 23556899999994 55553 688
Q ss_pred cEEEEECC-CCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEe-CC
Q 011711 215 TVQLWDCH-TGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGA-QD 290 (479)
Q Consensus 215 ~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~-~d 290 (479)
++.+|++. +++....+.. + ...+...+.+++++|+ .++++. .+
T Consensus 120 ~v~v~~~~~~g~~~~~~~~------------------------~---------~~~~~~~~~~~~~spdG~~l~~~~~~~ 166 (365)
T 1jof_A 120 YGNVFSVSETGKLEKNVQN------------------------Y---------EYQENTGIHGMVFDPTETYLYSADLTA 166 (365)
T ss_dssp EEEEEEECTTCCEEEEEEE------------------------E---------ECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred eEEEEccCCCCcCcceEee------------------------E---------EeCCCCcceEEEECCCCCEEEEEcCCC
Confidence 89999986 3544332210 0 0123456889999988 666665 46
Q ss_pred CcEEEEEcc-CCCCCcccceeeec--CCCCCeEEEEEc--CCEEEEEeC-CCeEEEEECC--CCcEE---EEEeC-----
Q 011711 291 GNILVWKGI-PNTQNPFQLAALLK--GHTRPVTCLAVG--GKRLYSGSM-DNTIRVWDLD--TLEAV---MTLNG----- 354 (479)
Q Consensus 291 g~i~iwd~~-~~~~~~~~~~~~~~--~h~~~i~~l~~~--~~~l~sgs~-dg~I~iwd~~--~~~~~---~~~~~----- 354 (479)
+.|.+||+. ++.. .....+. .|...+..++|+ ++++++++. ++.|.+|+++ +++.. ..+..
T Consensus 167 ~~v~~~~~~~~g~~---~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 243 (365)
T 1jof_A 167 NKLWTHRKLASGEV---ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI 243 (365)
T ss_dssp TEEEEEEECTTSCE---EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred CEEEEEEECCCCCE---EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence 899999997 4432 2222333 245678899997 778877765 7899999865 56543 22321
Q ss_pred --CCC------CcEEEE-Ec--CCEEEEEeCC-C-----eEEEEEcCCCcceEE----eccccCccceEEEeeeeCC---
Q 011711 355 --HTD------APMSLL-CW--DQYLLSCSLD-N-----TIKVWIMTEEGNLEV----AYTHNEDHGVLALGGLNDP--- 410 (479)
Q Consensus 355 --h~~------~v~~~~-~~--~~~l~s~s~d-g-----~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--- 410 (479)
|.. .+..+. ++ +++|+++..+ + .|.+|++.....+.. ...+......+++ +|
T Consensus 244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~----sp~~~ 319 (365)
T 1jof_A 244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAV----SPCPW 319 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCE----EECTT
T ss_pred CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCccccee----cCCCc
Confidence 121 366777 66 7788776543 2 899999963333332 1122223333444 48
Q ss_pred CCCcEEEEEeC-CCeEEEeecCCC
Q 011711 411 DGNPVLICSCN-DDSVHLYELPSF 433 (479)
Q Consensus 411 ~~~~~l~s~~~-dg~v~iwd~~~~ 433 (479)
+|+ +|++++. ++.|.+|+++..
T Consensus 320 dg~-~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 320 SDE-WMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CTT-EEEEECSSSCEEEEEEEETT
T ss_pred CCC-EEEEEEcCCCeEEEEEEchh
Confidence 788 5666654 589999998765
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.52 E-value=7.4e-13 Score=137.55 Aligned_cols=288 Identities=10% Similarity=-0.021 Sum_probs=179.1
Q ss_pred CCCCCCCCCCCCCCCCCceeccCC--CCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEe--cc
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSG--SEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYH--WL 160 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~--~~ 160 (479)
.+.+|...+..+++++++.+.+++ +.||..+||....... ...+..... ......+........+. +.
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~l~~~~~--~~~~~~~~~~~~~~~~~~SPD 89 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA------EESALPAPW--NVRNRVFEYSGFPWAGVPRPA 89 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC------EEESSCTTC--CBCCCGGGTCCCCEEEECCSS
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC------cceeCCCCc--cccccccccCCccceeeeecC
Confidence 356788889999999999999988 7789999997532211 001100000 00001111122233233 45
Q ss_pred CCe-eEe-CCCCCeEEEeecC--C-CceeeEEEec-----ccccEEEEEeCCCCCEEEEEeCC----------CcEEEEE
Q 011711 161 SGN-CVK-GDECRFWHSWFCG--E-GFTMLAKLEG-----HKKAVSGIALPLRSDKLYSGSRD----------GTVQLWD 220 (479)
Q Consensus 161 ~~~-~~~-g~~d~~i~vw~~~--~-~~~~~~~~~~-----H~~~V~~l~~s~~~~~l~s~s~D----------g~v~vwd 220 (479)
+.. ++. ...+..|.++++. . + + ...+.. |...+.+++|+|||+.|++++.| ..|++||
T Consensus 90 g~~~la~~~~~~~~l~~~~~~~~g~~-~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~ 167 (662)
T 3azo_A 90 GGPLLVFTHFGDQRLYAFEPDAPGGA-V-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVP 167 (662)
T ss_dssp SSCEEEEEBTTTCCEEEECTTSTTCC-C-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEE
T ss_pred CCeEEEEEECCCCeEEEEcCCCCCCC-C-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEE
Confidence 556 443 3346677777775 2 3 2 344555 77889999999999999999887 5899999
Q ss_pred CCC------CceEEEE-ecCCce--eEEEeCCCEEEEE-cC--------CeEEEEEcC-CC---ceEEe-cCCCccEEEE
Q 011711 221 CHT------GQSASVI-NLGAEV--GSLICEGPWVFVG-MP--------NVVKAWHIE-SS---AEFSL-DGPVGEVYSM 277 (479)
Q Consensus 221 ~~~------~~~~~~~-~~~~~~--~~~~~~~~~l~~~-~~--------~~i~v~~~~-~~---~~~~~-~~~~~~v~~~ 277 (479)
+.+ ++..... ...... ..+.++|+.|+.. .+ ..|.+||+. ++ +...+ ..+...+..+
T Consensus 168 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~ 247 (662)
T 3azo_A 168 LDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQA 247 (662)
T ss_dssp TTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEE
T ss_pred CCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcce
Confidence 988 5554333 222222 2455689887654 33 479999999 46 33333 3456789999
Q ss_pred EEcCC--EEEEEeCCC--cEEEEEccCCCCCcccceeeecCCCCC--------eEEEEEc--CCEEEEEeCCCeEEEE--
Q 011711 278 VVANE--MLFAGAQDG--NILVWKGIPNTQNPFQLAALLKGHTRP--------VTCLAVG--GKRLYSGSMDNTIRVW-- 341 (479)
Q Consensus 278 ~~~~~--~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~h~~~--------i~~l~~~--~~~l~sgs~dg~I~iw-- 341 (479)
.|+++ +++++..++ .|.+||+.++.. ......+... +.+++++ +.++++++. +.+++|
T Consensus 248 ~~spdg~l~~~~~~~~~~~l~~~~~~~~~~-----~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 248 EWAPDGSLIVATDRTGWWNLHRVDPATGAA-----TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECTTTCCE-----EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred EECCCCeEEEEECCCCCeEEEEEECCCCce-----eecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 99987 777778888 555555544321 1212222221 4567774 778888888 999999
Q ss_pred ECCCCcEEEEEeCCCCCcEEE-EEcCCEEE--EEeCCC--eEEEEEcCCCcce
Q 011711 342 DLDTLEAVMTLNGHTDAPMSL-LCWDQYLL--SCSLDN--TIKVWIMTEEGNL 389 (479)
Q Consensus 342 d~~~~~~~~~~~~h~~~v~~~-~~~~~~l~--s~s~dg--~i~iwd~~~~~~~ 389 (479)
|+.+++ +..+..|...+..+ +++++.++ +++.+. .|.++|+.+++..
T Consensus 322 d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 322 DPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp ETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred ECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence 665555 67788887777777 77765433 344444 4555566565543
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.51 E-value=8.9e-12 Score=117.67 Aligned_cols=267 Identities=11% Similarity=0.036 Sum_probs=174.0
Q ss_pred CCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEeCCCC
Q 011711 91 KSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDEC 170 (479)
Q Consensus 91 ~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~d 170 (479)
..+.+++++++|+.+++.+.++.+++++......... .+.. .-.+
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~--------~~~~---------------------------~~~~ 68 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQ--------RGLG---------------------------PIEE 68 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSC--------GGGC---------------------------SCCS
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecc--------cccc---------------------------cccC
Confidence 4568999999999999988787776664332211000 0000 0136
Q ss_pred CeEEEeecCCCceeeEEEe-cccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCc-eEEEEecCCceeEEEeCCCEEEE
Q 011711 171 RFWHSWFCGEGFTMLAKLE-GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ-SASVINLGAEVGSLICEGPWVFV 248 (479)
Q Consensus 171 ~~i~vw~~~~~~~~~~~~~-~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 248 (479)
+.|.+||..++ +.+..+. ++-.....++++++|+++++...++.|++||..... .+..+......
T Consensus 69 ~~i~~~d~~~g-~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~------------ 135 (329)
T 3fvz_A 69 DTILVIDPNNA-EILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP------------ 135 (329)
T ss_dssp CCEEEECTTTC-CEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC------------
T ss_pred CcEEEEECCCC-eEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC------------
Confidence 88999999877 5555554 455689999999999999988889999999976442 33333210000
Q ss_pred EcCCeEEEEEcCCCceEEecCCCccEEEEEEcC-C--EEEEEe-CCCcEEEEEccCCCCCcccceeeec----------C
Q 011711 249 GMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN-E--MLFAGA-QDGNILVWKGIPNTQNPFQLAALLK----------G 314 (479)
Q Consensus 249 ~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~-~--~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~----------~ 314 (479)
-....+......+++++ + ++++.+ .++.|++||.... ....+. +
T Consensus 136 ----------------g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~------~~~~~~~~g~~~~~~~~ 193 (329)
T 3fvz_A 136 ----------------GSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK------FVTQWGEESSGSSPRPG 193 (329)
T ss_dssp ----------------CCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC------EEEEECEECCSSSCCTT
T ss_pred ----------------CCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC------EEEEeccCCCCCCCCCc
Confidence 00013445678899987 4 555554 5899999994332 122222 2
Q ss_pred CCCCeEEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEe--CCCCCcEEEEEcCCEEEEE--------eCCCeEEEE
Q 011711 315 HTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLN--GHTDAPMSLLCWDQYLLSC--------SLDNTIKVW 381 (479)
Q Consensus 315 h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~l~s~--------s~dg~i~iw 381 (479)
+-.....++++ +.++++...++.|++||..+++.+..+. .+...+..+.+.+..++.. ..+..|++|
T Consensus 194 ~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~ 273 (329)
T 3fvz_A 194 QFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVM 273 (329)
T ss_dssp EESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEE
T ss_pred ccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEE
Confidence 22347889985 4556666788999999999999998884 3445566666664333332 334589999
Q ss_pred EcCCCcceEEec---cccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC
Q 011711 382 IMTEEGNLEVAY---THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (479)
Q Consensus 382 d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 432 (479)
|..+++.+..+. .+......++ .+|+|. ++++...++.|++|++..
T Consensus 274 ~~~~g~~~~~~~~~~~~~~~p~~ia----~~~dG~-lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 274 NFSSGEIIDVFKPVRKHFDMPHDIV----ASEDGT-VYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp ETTTCCEEEEECCSSSCCSSEEEEE----ECTTSE-EEEEESSSCCEEEEEEEE
T ss_pred EcCCCeEEEEEcCCCCccCCeeEEE----ECCCCC-EEEEECCCCEEEEEeCCc
Confidence 998887766653 2222223333 469995 888888999999999864
No 180
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.51 E-value=3e-11 Score=114.51 Aligned_cols=275 Identities=13% Similarity=0.035 Sum_probs=182.7
Q ss_pred CCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEe----------CCCcEEEEECCCCceEEEEecCC-----
Q 011711 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGS----------RDGTVQLWDCHTGQSASVINLGA----- 234 (479)
Q Consensus 170 d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s----------~Dg~v~vwd~~~~~~~~~~~~~~----- 234 (479)
++.|.+.|..+. +.+.++..-..+ . ++++|||++|+.++ .++.|.+||..+++.+..+..+.
T Consensus 58 ~~~V~ViD~~t~-~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~ 134 (386)
T 3sjl_D 58 VTQQFVIDGEAG-RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFL 134 (386)
T ss_dssp SEEEEEEETTTT-EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred CCEEEEEECCCC-eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccc
Confidence 579999999988 788888765666 4 99999999998876 36789999999999999887542
Q ss_pred -----ceeEEEeCCCEEEEEc---CCeEEEEEcCCCceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccC-CCCCc
Q 011711 235 -----EVGSLICEGPWVFVGM---PNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIP-NTQNP 305 (479)
Q Consensus 235 -----~~~~~~~~~~~l~~~~---~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~-~~~~~ 305 (479)
....+.++|++++++. ++.|.++|+.+.+......-.+...........+++.+.||++.+.++.. +...
T Consensus 135 ~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~- 213 (386)
T 3sjl_D 135 VGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE- 213 (386)
T ss_dssp BSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCE-
T ss_pred cCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEE-
Confidence 2345667999888763 58999999999987643322221111122334778889999999999876 3320
Q ss_pred ccceeeecCCCCCeE-EEEEc--CCEEEEEeCCCeEEEEECCCCc--EEEEEe------------CCCCCcEEEEEcCCE
Q 011711 306 FQLAALLKGHTRPVT-CLAVG--GKRLYSGSMDNTIRVWDLDTLE--AVMTLN------------GHTDAPMSLLCWDQY 368 (479)
Q Consensus 306 ~~~~~~~~~h~~~i~-~l~~~--~~~l~sgs~dg~I~iwd~~~~~--~~~~~~------------~h~~~v~~~~~~~~~ 368 (479)
......+..-..++. ...|. ...++..+.+|.|++.|+.+.. .+..+. ........+...++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~ 293 (386)
T 3sjl_D 214 ITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR 293 (386)
T ss_dssp EEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred EeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCe
Confidence 000001111112222 13442 3344446678999999997654 333332 112223444444666
Q ss_pred EEEEeC----------CCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEE-EeCCCeEEEeecCCCceee
Q 011711 369 LLSCSL----------DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLIC-SCNDDSVHLYELPSFMERG 437 (479)
Q Consensus 369 l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~dg~v~iwd~~~~~~~~ 437 (479)
++.... .+.|.+.|+.+.+.+..+.... ....+.+ ++|++.+|++ ...++.|.++|..+++.+.
T Consensus 294 lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~~~~lav----s~D~~~~ly~tn~~~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 294 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINV----SQDEKPLLYALSTGDKTLYIHDAESGEELR 368 (386)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEE----CSSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred EEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-CcceEEE----CCCCCeEEEEEcCCCCeEEEEECCCCcEEE
Confidence 666542 2579999999988776665432 2233444 6998745554 4568999999999999999
Q ss_pred eeeccCceEEEEECCC
Q 011711 438 RIFSRREVRVIETGPD 453 (479)
Q Consensus 438 ~~~~~~~v~~l~~s~~ 453 (479)
++...+....|.+++|
T Consensus 369 ~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 369 SVNQLGHGPQVITTAD 384 (386)
T ss_dssp EECCCCSSCCEEEECC
T ss_pred EecCCCCCceeEECCc
Confidence 9988777777777765
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.50 E-value=3.2e-11 Score=111.22 Aligned_cols=231 Identities=11% Similarity=0.142 Sum_probs=153.8
Q ss_pred CeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEe------cccccEEEEEe-CCCCCEEEEEeC-CCcEEEEECCCC
Q 011711 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLE------GHKKAVSGIAL-PLRSDKLYSGSR-DGTVQLWDCHTG 224 (479)
Q Consensus 153 ~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~------~H~~~V~~l~~-s~~~~~l~s~s~-Dg~v~vwd~~~~ 224 (479)
..+++......++++..++.|.+||.+ + +.+..+. +|...+.++++ .++++++++... ++.|.+|| .++
T Consensus 33 ~~v~~~~~g~l~v~~~~~~~i~~~d~~-g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g 109 (286)
T 1q7f_A 33 SGVAVNAQNDIIVADTNNHRIQIFDKE-G-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYG 109 (286)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECTT-S-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTS
T ss_pred ceEEECCCCCEEEEECCCCEEEEECCC-C-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCC
Confidence 355566666667777788999999987 4 3455553 34567899999 577776666643 78999999 556
Q ss_pred ceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCC
Q 011711 225 QSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNT 302 (479)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~ 302 (479)
+.+..+.. .+...+..++++++ ++++...++.|.+||....
T Consensus 110 ~~~~~~~~------------------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~- 152 (286)
T 1q7f_A 110 QFVRKFGA------------------------------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN- 152 (286)
T ss_dssp CEEEEECT------------------------------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-
T ss_pred cEEEEecC------------------------------------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-
Confidence 65544321 12345678888776 5555567889999996432
Q ss_pred CCcccceeeec--CCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCC--CCCcEEEEEc--CCEEEEEeC
Q 011711 303 QNPFQLAALLK--GHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGH--TDAPMSLLCW--DQYLLSCSL 374 (479)
Q Consensus 303 ~~~~~~~~~~~--~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h--~~~v~~~~~~--~~~l~s~s~ 374 (479)
....+. .+...+.+++++ ++++++...++.|++||. +++.+..+..+ ...+..++++ ++++++...
T Consensus 153 -----~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~ 226 (286)
T 1q7f_A 153 -----VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNH 226 (286)
T ss_dssp -----EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECS
T ss_pred -----EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCC
Confidence 122222 445568899997 566666677899999997 45667777543 3567788886 677777777
Q ss_pred CC-eEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCc
Q 011711 375 DN-TIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFM 434 (479)
Q Consensus 375 dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 434 (479)
++ .|.+||.. ++.+..+..+..... ...+.++|+|+ ++++ +.|+.|++|++....
T Consensus 227 ~~~~i~~~~~~-g~~~~~~~~~~~~~~--~~~i~~~~~g~-l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 227 NNFNLTIFTQD-GQLISALESKVKHAQ--CFDVALMDDGS-VVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp SSCEEEEECTT-SCEEEEEEESSCCSC--EEEEEEETTTE-EEEE-ETTTEEEEEECSCCC
T ss_pred CCEEEEEECCC-CCEEEEEcccCCCCc--ceeEEECCCCc-EEEE-CCCCeEEEEEccccc
Confidence 75 99999964 444444443322211 12233458887 6666 579999999986543
No 182
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.50 E-value=1.8e-11 Score=115.45 Aligned_cols=247 Identities=13% Similarity=0.068 Sum_probs=164.5
Q ss_pred CCCcEEEEECCCCceEEEEe-------cCCceeEEEeCCCEEEE-E-cCCeEEEEEcCCCceEEecCCCccEEEEEEcCC
Q 011711 212 RDGTVQLWDCHTGQSASVIN-------LGAEVGSLICEGPWVFV-G-MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE 282 (479)
Q Consensus 212 ~Dg~v~vwd~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~-~-~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~ 282 (479)
.+++|.++|.++++....+. .+.....+..++..+++ . .++.|.+||..+++.............++++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~ 94 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSD 94 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEET
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCC
Confidence 37899999999998765442 22333445444554443 3 568999999999988543344567888888544
Q ss_pred -EEEEEe-CCCcEEEEEccCCCCCcccceeeecCCC-----CCeEEEEEcCCEEEEEe--CCCeEEEEECCCCcEEEEEe
Q 011711 283 -MLFAGA-QDGNILVWKGIPNTQNPFQLAALLKGHT-----RPVTCLAVGGKRLYSGS--MDNTIRVWDLDTLEAVMTLN 353 (479)
Q Consensus 283 -~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~h~-----~~i~~l~~~~~~l~sgs--~dg~I~iwd~~~~~~~~~~~ 353 (479)
.++++. .++.|.+||..+... ...+.... .....++++++.++++. .++.|.++|+.+++.+.++.
T Consensus 95 g~lyv~~~~~~~v~~iD~~t~~~-----~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~ 169 (328)
T 3dsm_A 95 EKAYVTQIWDYRIFIINPKTYEI-----TGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELT 169 (328)
T ss_dssp TEEEEEEBSCSEEEEEETTTTEE-----EEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred CeEEEEECCCCeEEEEECCCCeE-----EEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence 666666 899999999887642 22232222 13445666767766665 48999999999999988887
Q ss_pred CCCCCcEEEEEc--CCEEEEEeCC----------CeEEEEEcCCCcceEEecccc-CccceEEEeeeeCCCCCcEEEEEe
Q 011711 354 GHTDAPMSLLCW--DQYLLSCSLD----------NTIKVWIMTEEGNLEVAYTHN-EDHGVLALGGLNDPDGNPVLICSC 420 (479)
Q Consensus 354 ~h~~~v~~~~~~--~~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~ 420 (479)
... ....+.++ +++++++..+ +.|.++|..+.+....+.... .....+++ +|+++ .+.++.
T Consensus 170 ~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~----~~d~~-~lyv~~ 243 (328)
T 3dsm_A 170 IGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQL----NGTRD-TLYWIN 243 (328)
T ss_dssp CSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEE----CTTSC-EEEEES
T ss_pred cCC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEE----ecCCC-EEEEEc
Confidence 533 23455555 5555555444 789999998876554443221 12333444 68888 444443
Q ss_pred CCCeEEEeecCCCceeeee-ec--cCceEEEEECC-Cc-eEEEE----cCCCcEEEEEec
Q 011711 421 NDDSVHLYELPSFMERGRI-FS--RREVRVIETGP-DG-LFFTG----DGTGMLSVWKIL 471 (479)
Q Consensus 421 ~dg~v~iwd~~~~~~~~~~-~~--~~~v~~l~~s~-~g-~l~sg----~~dg~v~vw~~~ 471 (479)
. .|.+||..+++..... .. ......++++| ++ ++++. ..++.|.+|+..
T Consensus 244 ~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 244 N--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp S--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred c--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 3 8999999887764221 11 36789999999 45 66666 678999999976
No 183
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.49 E-value=3.1e-11 Score=110.74 Aligned_cols=237 Identities=11% Similarity=0.039 Sum_probs=150.5
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEeccc-ccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEE
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHK-KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSL 239 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~-~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~ 239 (479)
...+++++.++.|.+||.+++ +.+.++..+. ..+.+++++|+|++|+ +.++.|..||. +++.+..+..+.
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG-~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~----- 75 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTK-EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPA----- 75 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTT-EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCT-----
T ss_pred CcEEEeeCCCCEEEEEECCCC-eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCC-----
Confidence 357889999999999999999 8889998876 5789999999999888 45778999998 788877665321
Q ss_pred EeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeC-CCcEEEEEccCCCCCcccceeeecCCC
Q 011711 240 ICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQ-DGNILVWKGIPNTQNPFQLAALLKGHT 316 (479)
Q Consensus 240 ~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~h~ 316 (479)
...+.++.+.++ .+++.+. ++.|..+|........+........+.
T Consensus 76 -------------------------------~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~ 124 (276)
T 3no2_A 76 -------------------------------GCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPH 124 (276)
T ss_dssp -------------------------------TCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGG
T ss_pred -------------------------------CccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCccc
Confidence 122444455544 5555444 555555553221100000000001111
Q ss_pred CCeEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEe
Q 011711 317 RPVTCLAV--GGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVA 392 (479)
Q Consensus 317 ~~i~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~ 392 (479)
.....+.+ +++++++...++.|..||.+ ++.+.++..+.. +.+.... ++.+++++.++.|..+|..+++.+..+
T Consensus 125 ~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~-~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~ 202 (276)
T 3no2_A 125 AQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGT-PFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRV 202 (276)
T ss_dssp GSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSC-CCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred ccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCC-ccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence 12223334 48999999999999999998 999999986533 3444444 788888888889999999988887777
Q ss_pred ccccCc--cceEEEeeeeCCCCCcEEEEEeCC--------CeEEEeec-CCCceeeeee
Q 011711 393 YTHNED--HGVLALGGLNDPDGNPVLICSCND--------DSVHLYEL-PSFMERGRIF 440 (479)
Q Consensus 393 ~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~d--------g~v~iwd~-~~~~~~~~~~ 440 (479)
.....+ ...........++|. ++++.... +..+++++ .+++.+.++.
T Consensus 203 ~~~~~~~~~l~~~~~~~~~~~G~-i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~ 260 (276)
T 3no2_A 203 NANDIEGVQLFFVAQLFPLQNGG-LYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN 260 (276)
T ss_dssp EGGGSBSCCCSEEEEEEECTTSC-EEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred cCCCCCCccccccccceEcCCCC-EEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence 543211 111122223347887 55555311 13345555 4555555554
No 184
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.49 E-value=9.3e-12 Score=118.24 Aligned_cols=253 Identities=7% Similarity=-0.003 Sum_probs=156.6
Q ss_pred ccEEEEEeCCCCCEEEEEe---------CCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEc-C---C--eEEEE
Q 011711 193 KAVSGIALPLRSDKLYSGS---------RDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGM-P---N--VVKAW 257 (479)
Q Consensus 193 ~~V~~l~~s~~~~~l~s~s---------~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~---~--~i~v~ 257 (479)
..+...++ ||++++... .++.|.+||+.+++.... .......+.++|+.++... + + .|.+|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l--~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~ 90 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI--ENATMPRISPDGKKIAFMRANEEKKVSEIWVA 90 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE--ESCEEEEECTTSSEEEEEEEETTTTEEEEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc--ccCCCeEECCCCCEEEEEEeccCCCcceEEEE
Confidence 34566666 777776542 256789999988875433 2222334556888776542 1 2 47778
Q ss_pred EcCCCceEEecCCCccEEEEEEcCC--EEEEEeC---------------------------CCcEEEEEccCCCCCcccc
Q 011711 258 HIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQ---------------------------DGNILVWKGIPNTQNPFQL 308 (479)
Q Consensus 258 ~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~---------------------------dg~i~iwd~~~~~~~~~~~ 308 (479)
++.+++...+..... +..+.|+|+ .|+.++. ...|++||+.++..
T Consensus 91 ~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~----- 164 (347)
T 2gop_A 91 DLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV----- 164 (347)
T ss_dssp ETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE-----
T ss_pred ECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE-----
Confidence 888877655544444 889999887 5666553 25688999876542
Q ss_pred eeeecCCCCCeEEEEEc--CCEEEEEeCCC-------eEEEEECCCCcEEEEEeCCCCCcEEEEEcCCEEEEEeCC----
Q 011711 309 AALLKGHTRPVTCLAVG--GKRLYSGSMDN-------TIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLD---- 375 (479)
Q Consensus 309 ~~~~~~h~~~i~~l~~~--~~~l~sgs~dg-------~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~d---- 375 (479)
...+.. . .+..+.|+ + +++++..++ ...+|.+++++. ..+..+ ..+..+..+|+.|+.++.+
T Consensus 165 ~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~spdg~~l~~~~~~~~~~ 239 (347)
T 2gop_A 165 IEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAVDSDGERILLYGKPEKKY 239 (347)
T ss_dssp EEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEEEECSSCEEEEECCSSSC
T ss_pred EeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeECCCCCEEEEEEccccCC
Confidence 122222 2 67788886 5 666665542 334444435543 444434 5555666668888777654
Q ss_pred ----CeEEEEEcCCCcceEEecc-ccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEE
Q 011711 376 ----NTIKVWIMTEEGNLEVAYT-HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIET 450 (479)
Q Consensus 376 ----g~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~ 450 (479)
..|.+|| +++ ...+.. +...+.. ...++ ++ ++++++.++.+++| +.+++......+...|.+++|
T Consensus 240 ~~~~~~l~~~d--~~~-~~~l~~~~~~~~~~---~~~~s-dg--~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~ 309 (347)
T 2gop_A 240 MSEHNKLYIYD--GKE-VMGILDEVDRGVGQ---AKIKD-GK--VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDV 309 (347)
T ss_dssp CCSSCEEEEEC--SSC-EEESSTTCCSEEEE---EEEET-TE--EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEE
T ss_pred ccccceEEEEC--CCc-eEeccccCCcccCC---ccEEc-Cc--EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeee
Confidence 3677777 333 333322 2222211 13456 65 78888899999999 876655444445778999999
Q ss_pred CCCceEEEEcCCCcE-EEEEec
Q 011711 451 GPDGLFFTGDGTGML-SVWKIL 471 (479)
Q Consensus 451 s~~g~l~sg~~dg~v-~vw~~~ 471 (479)
+| ..+++++.++.. .+|.+.
T Consensus 310 s~-~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 310 DE-IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp SS-SEEEEEECSSSCCEEEEES
T ss_pred eC-cEEEEEcCCCChHHheEeC
Confidence 99 866666666665 788775
No 185
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.47 E-value=5.9e-11 Score=114.20 Aligned_cols=254 Identities=16% Similarity=0.102 Sum_probs=172.4
Q ss_pred cCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCcee--
Q 011711 160 LSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVG-- 237 (479)
Q Consensus 160 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~-- 237 (479)
..+.+..++.++.+..+|.+++ +.+..+............ .+..++.++.++.|..+|..+|+.+.......+..
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG-~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDG-TVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL 178 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTC-CEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCC-CEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee
Confidence 4567777888899999999998 666655544322211122 24578889999999999999999998887654432
Q ss_pred -----EEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCc------------cEEEEEEcCCEEEEEeCCCcEEEEEccC
Q 011711 238 -----SLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVG------------EVYSMVVANEMLFAGAQDGNILVWKGIP 300 (479)
Q Consensus 238 -----~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~------------~v~~~~~~~~~l~~g~~dg~i~iwd~~~ 300 (479)
....++.+++...++.+..+|..+++..-...... .........+.+++++.++.+..+|..+
T Consensus 179 ~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t 258 (376)
T 3q7m_A 179 RGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS 258 (376)
T ss_dssp CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTT
T ss_pred cCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC
Confidence 12234544444568899999999888753221110 0012233456888899999999999987
Q ss_pred CCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeC-CCCCcEEEEEcCCEEEEEeCCCeEE
Q 011711 301 NTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNG-HTDAPMSLLCWDQYLLSCSLDNTIK 379 (479)
Q Consensus 301 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~l~s~s~dg~i~ 379 (479)
++. ..... ......+...++.++.++.++.|..+|..+++.+..... ...........+..|+.++.+|.+.
T Consensus 259 G~~-----~w~~~--~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~ 331 (376)
T 3q7m_A 259 GQI-----MWKRE--LGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLH 331 (376)
T ss_dssp CCE-----EEEEC--CCCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEE
T ss_pred CcE-----Eeecc--CCCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEE
Confidence 753 22222 234556677788999999999999999999999888763 2333444555688999999999999
Q ss_pred EEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 011711 380 VWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (479)
Q Consensus 380 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd 429 (479)
++|..+++.+................ .++ .|+.++.+|.|+.|+
T Consensus 332 ~~d~~tG~~~~~~~~~~~~~~~~~~~----~~~--~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 332 WINVEDGRFVAQQKVDSSGFQTEPVA----ADG--KLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEETTTCCEEEEEECCTTCBCSCCEE----ETT--EEEEEBTTSCEEEEE
T ss_pred EEECCCCcEEEEEecCCCcceeCCEE----ECC--EEEEEeCCCEEEEEe
Confidence 99999987766554422222211111 233 466788899999886
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.46 E-value=3.6e-11 Score=125.87 Aligned_cols=243 Identities=10% Similarity=0.007 Sum_probs=156.3
Q ss_pred cccccEEEEEeCCCCCEEEEEeCCC-----cEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCce
Q 011711 190 GHKKAVSGIALPLRSDKLYSGSRDG-----TVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAE 264 (479)
Q Consensus 190 ~H~~~V~~l~~s~~~~~l~s~s~Dg-----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~ 264 (479)
+|...+..++|||||++||.++.++ .|++||+.+++.......
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-------------------------------- 169 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-------------------------------- 169 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc--------------------------------
Confidence 3555789999999999998776543 899999998876543210
Q ss_pred EEecCCCccEEEEEEcCC--EEEEEeCCCc----------------EEEEEccCCCCCcccceeeecCCCCCeEEEEEc-
Q 011711 265 FSLDGPVGEVYSMVVANE--MLFAGAQDGN----------------ILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG- 325 (479)
Q Consensus 265 ~~~~~~~~~v~~~~~~~~--~l~~g~~dg~----------------i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~- 325 (479)
...+..++|+++ .|+.++.++. |++|++.++... ..++.....|...+..+.++
T Consensus 170 ------~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~-~~~v~~~~~~~~~~~~~~~Sp 242 (710)
T 2xdw_A 170 ------RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSE-DILCAEFPDEPKWMGGAELSD 242 (710)
T ss_dssp ------EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGG-CEEEECCTTCTTCEEEEEECT
T ss_pred ------CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCccc-ceEEeccCCCCeEEEEEEEcC
Confidence 011345677766 6666666554 999999776421 01222233355667788886
Q ss_pred -CCEEEEEeC-----CCeEEEEECCC------Cc-EEEEEeCCCCCcEE-EEEcCCEEEEEeCC----CeEEEEEcCCCc
Q 011711 326 -GKRLYSGSM-----DNTIRVWDLDT------LE-AVMTLNGHTDAPMS-LLCWDQYLLSCSLD----NTIKVWIMTEEG 387 (479)
Q Consensus 326 -~~~l~sgs~-----dg~I~iwd~~~------~~-~~~~~~~h~~~v~~-~~~~~~~l~s~s~d----g~i~iwd~~~~~ 387 (479)
+++|+..+. +..|++||+.+ ++ ....+..+...+.. +..+++.|+..+.+ +.|.+||+.+..
T Consensus 243 Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 243 DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 788777664 67899999987 43 45666666665544 33447777666553 369999998764
Q ss_pred --ceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCe--EEEeecCCCceeeeee-ccCceEEEEECCCc-eEE-EE-
Q 011711 388 --NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDS--VHLYELPSFMERGRIF-SRREVRVIETGPDG-LFF-TG- 459 (479)
Q Consensus 388 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~--v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~-sg- 459 (479)
....+..+....... ...+++++. ++++...|+. |.+|++.+++....+. +...+..+.++|++ .++ +.
T Consensus 323 ~~~~~~l~~~~~~~~~~--~~~~~~~~~-lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~s 399 (710)
T 2xdw_A 323 ESKWKVLVPEHEKDVLE--WVACVRSNF-LVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFT 399 (710)
T ss_dssp GGGCEEEECCCSSCEEE--EEEEETTTE-EEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEE
T ss_pred cccceeccCCCCCCeEE--EEEEEcCCE-EEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEe
Confidence 234444443321111 122334444 8888888885 5667776676555554 36678899999988 444 32
Q ss_pred --cCCCcEEEEEeccCC
Q 011711 460 --DGTGMLSVWKILAKP 474 (479)
Q Consensus 460 --~~dg~v~vw~~~~~~ 474 (479)
...+.|.+||+.+++
T Consensus 400 s~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 400 SFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CSSCCCEEEEEETTSSS
T ss_pred CCCCCCEEEEEECCCCc
Confidence 246899999987655
No 187
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.45 E-value=2.8e-11 Score=110.48 Aligned_cols=236 Identities=12% Similarity=0.060 Sum_probs=152.6
Q ss_pred cEEEEEeCCCCCEEE-EEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCc
Q 011711 194 AVSGIALPLRSDKLY-SGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVG 272 (479)
Q Consensus 194 ~V~~l~~s~~~~~l~-s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~ 272 (479)
...++++++++++++ +.+.++.|.+||..++.... +. .....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~~------------------------------------~~~~~ 67 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LP------------------------------------FNGLY 67 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-CC------------------------------------CCSCC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-Ee------------------------------------eCCcC
Confidence 678899999999777 44778899999875543211 10 01223
Q ss_pred cEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEE
Q 011711 273 EVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAV 349 (479)
Q Consensus 273 ~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 349 (479)
.+.+++++++ .++++..++.|.+||...... ..........+..++++ ++++++...++.|.+|+..+....
T Consensus 68 ~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~-----~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~ 142 (270)
T 1rwi_B 68 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ-----TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT 142 (270)
T ss_dssp SCCCEEECTTCCEEEEETTTEEEEECTTCSCC-----EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE
T ss_pred CcceeEECCCCCEEEEcCCCEEEEEeCCCceE-----eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE
Confidence 4566777765 455555588999999765432 11111233567889996 666666667889999987665544
Q ss_pred EEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEE
Q 011711 350 MTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHL 427 (479)
Q Consensus 350 ~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~i 427 (479)
.........+..+.++ ++++++...++.|.+||................... +..+++|. ++++...++.|.+
T Consensus 143 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~----i~~d~~g~-l~v~~~~~~~v~~ 217 (270)
T 1rwi_B 143 VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWG----IAVDEAGT-VYVTEHNTNQVVK 217 (270)
T ss_dssp ECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEE----EEECTTCC-EEEEETTTSCEEE
T ss_pred eeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceE----EEECCCCC-EEEEECCCCcEEE
Confidence 3323333346667776 666666667889999998765433221111122222 33468885 7777777889999
Q ss_pred eecCCCceeeeee-ccCceEEEEECCCc-eEEEEcCCCcEEEEEeccCCCC
Q 011711 428 YELPSFMERGRIF-SRREVRVIETGPDG-LFFTGDGTGMLSVWKILAKPNA 476 (479)
Q Consensus 428 wd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~~~ 476 (479)
|+........... +...+..++++++| ++++...++.|+++++...+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 218 LLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHHH 268 (270)
T ss_dssp ECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGSC
T ss_pred EcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcccc
Confidence 9987654433222 23568999999999 8888889999999999876543
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.45 E-value=8.3e-10 Score=111.31 Aligned_cols=321 Identities=8% Similarity=-0.002 Sum_probs=205.3
Q ss_pred CCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEeCCCCCeEEEeec
Q 011711 99 PKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECRFWHSWFC 178 (479)
Q Consensus 99 s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~d~~i~vw~~ 178 (479)
.+++.++++.+.|+++.++|..+.... . .+..+ ..+..+.+.+.+..+..++.++.|.+||+
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~----~--~i~~g------------~~p~~v~~SpDGr~lyv~~~dg~V~viD~ 225 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIK----T--VLDTG------------YAVHISRLSASGRYLFVIGRDGKVNMIDL 225 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEE----E--EEECS------------SCEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEE----E--EEeCC------------CCccceEECCCCCEEEEEcCCCeEEEEEC
Confidence 466788888888999999986554320 0 00011 11125667777777777788999999999
Q ss_pred C--CCceeeEEEecccccEEEEEeC----CCCCEEEEEeC-CCcEEEEECCCCceEEEEecCC------------ceeEE
Q 011711 179 G--EGFTMLAKLEGHKKAVSGIALP----LRSDKLYSGSR-DGTVQLWDCHTGQSASVINLGA------------EVGSL 239 (479)
Q Consensus 179 ~--~~~~~~~~~~~H~~~V~~l~~s----~~~~~l~s~s~-Dg~v~vwd~~~~~~~~~~~~~~------------~~~~~ 239 (479)
. +. +.+.++.... ....++|+ |||++++++.. +++|.|+|..+.+.+..+.... .+..+
T Consensus 226 ~~~t~-~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i 303 (567)
T 1qks_A 226 WMKEP-TTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI 303 (567)
T ss_dssp TSSSC-CEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred CCCCC-cEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEE
Confidence 5 55 6777777644 35789999 69999887765 5899999999999998877532 22333
Q ss_pred Ee--CCCEEEEE--cCCeEEEEEcCCCceEE--ecCCCccEEEEEEcCC--EEEE-EeCCCcEEEEEccCCCCCccccee
Q 011711 240 IC--EGPWVFVG--MPNVVKAWHIESSAEFS--LDGPVGEVYSMVVANE--MLFA-GAQDGNILVWKGIPNTQNPFQLAA 310 (479)
Q Consensus 240 ~~--~~~~l~~~--~~~~i~v~~~~~~~~~~--~~~~~~~v~~~~~~~~--~l~~-g~~dg~i~iwd~~~~~~~~~~~~~ 310 (479)
.. ++..++.. ..+.|.++|........ ..........+.|+++ ++++ ...++.|.++|+.+++.. ..+.
T Consensus 304 ~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~--~~i~ 381 (567)
T 1qks_A 304 LASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV--AIED 381 (567)
T ss_dssp EECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE--EEEE
T ss_pred EEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEE--EEEe
Confidence 32 33433333 56899999987754321 1223345667888887 5544 456889999999876431 1111
Q ss_pred e--ecCCCC-CeEEEEEcCCE-EEEEe-CCCeEEEEECCC-------CcEEEEEeCCCCCcEEEE--EcCCEEEEEeC--
Q 011711 311 L--LKGHTR-PVTCLAVGGKR-LYSGS-MDNTIRVWDLDT-------LEAVMTLNGHTDAPMSLL--CWDQYLLSCSL-- 374 (479)
Q Consensus 311 ~--~~~h~~-~i~~l~~~~~~-l~sgs-~dg~I~iwd~~~-------~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~-- 374 (479)
. ...|.+ .+.-+..++.. ++++. .+++|.++|..+ .+.++++......-..+. .+++++++...
T Consensus 382 vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~ 461 (567)
T 1qks_A 382 TGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN 461 (567)
T ss_dssp CSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC
T ss_pred ccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCC
Confidence 1 122432 22211222344 44543 468999999988 678888886543323333 34778887663
Q ss_pred -----CCeEEEEEcCCC-----cce-EEeccc----cCccceEEEeeeeCCCCCcEEEEEe----CCCeEEEeecCCCce
Q 011711 375 -----DNTIKVWIMTEE-----GNL-EVAYTH----NEDHGVLALGGLNDPDGNPVLICSC----NDDSVHLYELPSFME 435 (479)
Q Consensus 375 -----dg~i~iwd~~~~-----~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~l~s~~----~dg~v~iwd~~~~~~ 435 (479)
.++|.++|+.+. ... ..+... -.+.........++++|+.+.++.. .++.|.++|..++++
T Consensus 462 ~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~ 541 (567)
T 1qks_A 462 PEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL 541 (567)
T ss_dssp SSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred CCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceE
Confidence 459999999876 211 222110 0011223445566899997777643 379999999999998
Q ss_pred eeeeec
Q 011711 436 RGRIFS 441 (479)
Q Consensus 436 ~~~~~~ 441 (479)
...+..
T Consensus 542 ~~~i~~ 547 (567)
T 1qks_A 542 KHVIKD 547 (567)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 877764
No 189
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.43 E-value=8.9e-11 Score=107.66 Aligned_cols=206 Identities=12% Similarity=0.005 Sum_probs=141.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC
Q 011711 203 RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE 282 (479)
Q Consensus 203 ~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~ 282 (479)
.+++|++++.|+.|.+||.++|+.+..+..+. ...+.++.+.++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~------------------------------------~~~~~~~~~~pd 47 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK------------------------------------GWECNSVAATKA 47 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCT------------------------------------TCCCCEEEECTT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc------------------------------------cCCCcCeEECCC
Confidence 46789999999999999999999887765321 023445566655
Q ss_pred -EEEEEeCCCcEEEEEccCCCCCcccceeeecCC-CCCeEEEEEc--CCEEEEEeC-CCeEEEEECCCCcEEEEEeCCC-
Q 011711 283 -MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGH-TRPVTCLAVG--GKRLYSGSM-DNTIRVWDLDTLEAVMTLNGHT- 356 (479)
Q Consensus 283 -~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h-~~~i~~l~~~--~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~h~- 356 (479)
.+++ +.++.|..||. +++ .+..+..+ ...+.++.+. ++.+++.+. ++.|..+|. +++.+.++....
T Consensus 48 G~ilv-s~~~~V~~~d~-~G~-----~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~ 119 (276)
T 3no2_A 48 GEILF-SYSKGAKMITR-DGR-----ELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETG 119 (276)
T ss_dssp SCEEE-ECBSEEEEECT-TSC-----EEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCS
T ss_pred CCEEE-eCCCCEEEECC-CCC-----EEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCC
Confidence 3333 45677888887 443 23444443 2456677764 888888877 888888886 788887775221
Q ss_pred -----CCcE--EEEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 011711 357 -----DAPM--SLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (479)
Q Consensus 357 -----~~v~--~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd 429 (479)
.... ....+++++++...++.|..||.+ ++.+..+....... .... .++|+ +++++..++.|..+|
T Consensus 120 ~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~-~~~~----~~~g~-~~v~~~~~~~v~~~d 192 (276)
T 3no2_A 120 IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPF-SSAF----LDNGD-CLVACGDAHCFVQLN 192 (276)
T ss_dssp CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCC-EEEE----CTTSC-EEEECBTTSEEEEEC
T ss_pred CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCcc-ceeE----cCCCC-EEEEeCCCCeEEEEe
Confidence 1222 233348999999999999999997 77666665543322 2222 48887 777777788999999
Q ss_pred cCCCceeeeeecc-------CceEEEEECCCc-eEEEE
Q 011711 430 LPSFMERGRIFSR-------REVRVIETGPDG-LFFTG 459 (479)
Q Consensus 430 ~~~~~~~~~~~~~-------~~v~~l~~s~~g-~l~sg 459 (479)
..+++.+.++... ..+..++..++| .+++.
T Consensus 193 ~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 193 LESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp TTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred CcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 9999998888642 227888999999 55554
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.43 E-value=4.3e-12 Score=132.53 Aligned_cols=247 Identities=9% Similarity=-0.052 Sum_probs=160.9
Q ss_pred CCCCCCCCCCCCCCCceecc-----CCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccC
Q 011711 87 SNHKKSPPSYNCPKNNVRVS-----SGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS 161 (479)
Q Consensus 87 ~gh~~~i~~~~~s~~g~~la-----s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 161 (479)
++|...+.+++|||||++|| +|+++.+|++||+.+.....+. .. .......+++.+.+
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~--~~---------------~~~~~~~~~wspDg 179 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD--VI---------------EGGKYATPKWTPDS 179 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC--CB---------------SCCTTCCCEECTTS
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc--cc---------------CcccccceEEecCC
Confidence 45666778899999999999 8988899999998876531000 00 00111345666666
Q ss_pred CeeEeCCCCCe-------------EEEeecCCCc---eeeEEEecccccEEEEEeCCCCCEEEEEeCCC----cEEEEEC
Q 011711 162 GNCVKGDECRF-------------WHSWFCGEGF---TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDG----TVQLWDC 221 (479)
Q Consensus 162 ~~~~~g~~d~~-------------i~vw~~~~~~---~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg----~v~vwd~ 221 (479)
..++.++.|.. |++|++.++. .++.....|...+.++.|+|||++|+.++.++ .|.+|+.
T Consensus 180 ~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~ 259 (695)
T 2bkl_A 180 KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRP 259 (695)
T ss_dssp SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECT
T ss_pred CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcC
Confidence 67776666554 9999998773 24444555667899999999999999888766 7788877
Q ss_pred CCCceEEEEecCCc-eeEEEeCCCEEEEEc----CCeEEEEEcCCCce---EEecCC--CccEEEEEEcCC-EEEEEeCC
Q 011711 222 HTGQSASVINLGAE-VGSLICEGPWVFVGM----PNVVKAWHIESSAE---FSLDGP--VGEVYSMVVANE-MLFAGAQD 290 (479)
Q Consensus 222 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~----~~~i~v~~~~~~~~---~~~~~~--~~~v~~~~~~~~-~l~~g~~d 290 (479)
.+++.......... ...+..++.+++.+. ++.|.+|++.++.. ..+..+ ...+..+.+..+ ++++...|
T Consensus 260 ~~~~~~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~d 339 (695)
T 2bkl_A 260 GEKDFRLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKD 339 (695)
T ss_dssp TCSSCEEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEET
T ss_pred CCCceEEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEEC
Confidence 66665544443333 233335666444443 47899999987652 333322 456778888866 77888889
Q ss_pred CcEEEEEccCCCCCcccceeeecCC-CCCeEEEEEc--CCEEEE-Ee---CCCeEEEEECCCCcEEEEEeCC
Q 011711 291 GNILVWKGIPNTQNPFQLAALLKGH-TRPVTCLAVG--GKRLYS-GS---MDNTIRVWDLDTLEAVMTLNGH 355 (479)
Q Consensus 291 g~i~iwd~~~~~~~~~~~~~~~~~h-~~~i~~l~~~--~~~l~s-gs---~dg~I~iwd~~~~~~~~~~~~h 355 (479)
+..++|.+..... ....+..+ ...+..+.++ ++.++. .+ ..++|++||+.+++. ..+..+
T Consensus 340 g~~~l~~~~~~g~----~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~-~~l~~~ 406 (695)
T 2bkl_A 340 ATSEVRVATLKGK----PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS-ELWAKV 406 (695)
T ss_dssp TEEEEEEEETTCC----EEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE-EEEEEC
T ss_pred CEEEEEEEeCCCC----eeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE-EEEecC
Confidence 9988887653211 12334433 4556666664 555553 22 347899999998874 334433
No 191
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.43 E-value=3.8e-09 Score=97.57 Aligned_cols=269 Identities=9% Similarity=0.053 Sum_probs=171.2
Q ss_pred EecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEe--cCCceeEEEe--CCCEEEEEc-CCeEEEEEcCCC
Q 011711 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN--LGAEVGSLIC--EGPWVFVGM-PNVVKAWHIESS 262 (479)
Q Consensus 188 ~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~--~~~~l~~~~-~~~i~v~~~~~~ 262 (479)
+..+...+.++++.++|+++++...++.|.+||.. ++...... ....+..+.. ++.+.++.. ++.|..|+.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 33455789999999999988877778999999988 55433221 1233445543 667777664 6889999987 3
Q ss_pred ceEEe--cCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCC
Q 011711 263 AEFSL--DGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDN 336 (479)
Q Consensus 263 ~~~~~--~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg 336 (479)
..... ......+..++++++ ++++...++.|..||. ++.. . ......+...+..++++ +..+++...++
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~---~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 162 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI---R-EYELPNKGSYPSFITLGSDNALWFTENQNN 162 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE---E-EEECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE---E-EecCCCCCCCCceEEEcCCCCEEEEeCCCC
Confidence 33222 234567889999876 4455556789999997 3321 1 11223345578889987 55666666678
Q ss_pred eEEEEECCCCcEEEE-EeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCC
Q 011711 337 TIRVWDLDTLEAVMT-LNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGN 413 (479)
Q Consensus 337 ~I~iwd~~~~~~~~~-~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (479)
.|..||. +++.... +..+...+..+.++ +.+.++...++.|.+||. ++.. ........... ...+..+++|.
T Consensus 163 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~--~~~i~~~~~g~ 237 (299)
T 2z2n_A 163 AIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI-TEFKIPTPNAR--PHAITAGAGID 237 (299)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-EEEECSSTTCC--EEEEEECSTTC
T ss_pred EEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE-EEEECCCCCCC--ceeEEECCCCC
Confidence 9999999 6665442 23344557778776 566666666889999998 5442 22211111111 22333468887
Q ss_pred cEEEEEeCCCeEEEeecCCCceeeeee---ccCceEEEEECCCc-eEEEEcCCCcEEEEEeccC
Q 011711 414 PVLICSCNDDSVHLYELPSFMERGRIF---SRREVRVIETGPDG-LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 414 ~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~ 473 (479)
+.++...++.|..||.. ++. ..+. +...+.++++ ++| ++++.. .+.|..++..++
T Consensus 238 -l~v~~~~~~~i~~~d~~-g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 238 -LWFTEWGANKIGRLTSN-NII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp -EEEEETTTTEEEEEETT-TEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred -EEEeccCCceEEEECCC-Cce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 66665577899999983 432 2332 2457899999 888 444444 667777777654
No 192
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.42 E-value=2.7e-09 Score=102.22 Aligned_cols=256 Identities=10% Similarity=0.005 Sum_probs=165.0
Q ss_pred eEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEe----------CCCcEEEEECCCCceEEEEecC--------
Q 011711 172 FWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGS----------RDGTVQLWDCHTGQSASVINLG-------- 233 (479)
Q Consensus 172 ~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s----------~Dg~v~vwd~~~~~~~~~~~~~-------- 233 (479)
.|.++|..++ +.+..+.....+ .++++||+++|+.+. .++.|.+||..+.+.+..+...
T Consensus 48 ~v~v~D~~t~-~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g 124 (373)
T 2mad_H 48 QQWVLDAGSG-SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVG 124 (373)
T ss_pred EEEEEECCCC-eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccC
Confidence 8999999888 777777755555 999999999999886 3678999999999988887764
Q ss_pred --CceeEEEeCCCEEEEEc---CCeEEEEEcCCCceEEe-cCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCccc
Q 011711 234 --AEVGSLICEGPWVFVGM---PNVVKAWHIESSAEFSL-DGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQ 307 (479)
Q Consensus 234 --~~~~~~~~~~~~l~~~~---~~~i~v~~~~~~~~~~~-~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 307 (479)
.....+.++|+++++.. ++.|.++| .+++.... ......+......+..+++.+.||.+.++|. ++... .
T Consensus 125 ~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~--~ 200 (373)
T 2mad_H 125 PYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAA--G 200 (373)
T ss_pred CCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEE--E
Confidence 12345667999888763 47899999 98887654 4333333222223346777889999999999 55421 0
Q ss_pred cee--eecCCCCCeE-EEEE--cCCEEEEEeCCCeEEEEECCCCc--EEEEEeCCC----------CCc--EEEEEcCCE
Q 011711 308 LAA--LLKGHTRPVT-CLAV--GGKRLYSGSMDNTIRVWDLDTLE--AVMTLNGHT----------DAP--MSLLCWDQY 368 (479)
Q Consensus 308 ~~~--~~~~h~~~i~-~l~~--~~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~h~----------~~v--~~~~~~~~~ 368 (479)
... .......++. ...+ ++..++..+.++.+.+.|+.+.. .+..+.... ... ..+..+++.
T Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ 280 (373)
T 2mad_H 201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG 280 (373)
T ss_pred EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence 000 0001122221 1222 23444444478899999997653 233332111 111 233333566
Q ss_pred EEEEeC----------CCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEe-CCCeEEEeecCCCceee
Q 011711 369 LLSCSL----------DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC-NDDSVHLYELPSFMERG 437 (479)
Q Consensus 369 l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~ 437 (479)
++.... ++.|.++|..+.+.+..+.... ....+.+ +|||+.+++++. .++.|.++|..+++.+.
T Consensus 281 lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~----s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~ 355 (373)
T 2mad_H 281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISV----AQDGGPDLYALSAGTEVLHIYDAGAGDQDQ 355 (373)
T ss_pred EEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEE----CCCCCeEEEEEcCCCCeEEEEECCCCCEEe
Confidence 666543 3579999999887766664332 2333444 699985555555 58999999999999887
Q ss_pred ee
Q 011711 438 RI 439 (479)
Q Consensus 438 ~~ 439 (479)
.+
T Consensus 356 ~i 357 (373)
T 2mad_H 356 ST 357 (373)
T ss_pred ee
Confidence 74
No 193
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.41 E-value=3.7e-11 Score=125.72 Aligned_cols=221 Identities=8% Similarity=-0.033 Sum_probs=135.2
Q ss_pred CeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCc----------------EEEEECCCCceEEEEecCC
Q 011711 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGT----------------VQLWDCHTGQSASVINLGA 234 (479)
Q Consensus 171 ~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~----------------v~vwd~~~~~~~~~~~~~~ 234 (479)
..|++||+.++ +.+.....+ ..+..++|+|||+.|+.++.++. |++|++.+++....+.
T Consensus 151 ~~i~v~d~~tg-~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v--- 225 (710)
T 2xdw_A 151 VTIKFMKVDGA-KELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILC--- 225 (710)
T ss_dssp EEEEEEETTTT-EEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEE---
T ss_pred EEEEEEECCCC-CCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEE---
Confidence 47899999888 444322222 23778999999999999988765 6666655543210000
Q ss_pred ceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeC-----CCcEEEEEccC------C
Q 011711 235 EVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQ-----DGNILVWKGIP------N 301 (479)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~-----dg~i~iwd~~~------~ 301 (479)
.....+...+..+.++++ .|+.++. +..|++||+.+ +
T Consensus 226 ------------------------------~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 275 (710)
T 2xdw_A 226 ------------------------------AEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG 275 (710)
T ss_dssp ------------------------------ECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred ------------------------------eccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCC
Confidence 011123455778888888 5555543 57899999876 3
Q ss_pred CCCcccceeeecCCCCCeEEE-EEcCCEEEEEeCC----CeEEEEECCCCc--EEEEEeCCCC--CcEEEEEc-C-CEEE
Q 011711 302 TQNPFQLAALLKGHTRPVTCL-AVGGKRLYSGSMD----NTIRVWDLDTLE--AVMTLNGHTD--APMSLLCW-D-QYLL 370 (479)
Q Consensus 302 ~~~~~~~~~~~~~h~~~i~~l-~~~~~~l~sgs~d----g~I~iwd~~~~~--~~~~~~~h~~--~v~~~~~~-~-~~l~ 370 (479)
.. ....+..+...+... ..+++.|+..+.+ +.|.+||+.+++ ....+..|.. .+..+.+. + .+++
T Consensus 276 ~~----~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 276 IL----KWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SC----CCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred cc----ceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 21 133344555555443 3347777665543 369999998874 2355555544 46667776 4 4666
Q ss_pred EEeCCCe--EEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEe---CCCeEEEeecCCCc
Q 011711 371 SCSLDNT--IKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC---NDDSVHLYELPSFM 434 (479)
Q Consensus 371 s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~---~dg~v~iwd~~~~~ 434 (479)
+...|+. |.+||+.+++.+..+..+... ...+.++|+++.++++.+ ..++|++||+.+++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~----v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLEVGS----VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCCSSE----EEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCCCce----EEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7777875 556676566555555444222 222334688875665544 34789999998876
No 194
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.41 E-value=2.8e-11 Score=126.29 Aligned_cols=241 Identities=8% Similarity=0.015 Sum_probs=152.5
Q ss_pred cccccEEEEEeCCCCCEEE-----EEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCce
Q 011711 190 GHKKAVSGIALPLRSDKLY-----SGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAE 264 (479)
Q Consensus 190 ~H~~~V~~l~~s~~~~~l~-----s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~ 264 (479)
+|...+.+++|||||++|| +|+.+.+|++||+.+++.+....
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~--------------------------------- 164 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV--------------------------------- 164 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC---------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcc---------------------------------
Confidence 4666899999999999998 44455789999999887530000
Q ss_pred EEecCCCccEEEEEEcCC--EEEEEeCCCc-------------EEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CC
Q 011711 265 FSLDGPVGEVYSMVVANE--MLFAGAQDGN-------------ILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GK 327 (479)
Q Consensus 265 ~~~~~~~~~v~~~~~~~~--~l~~g~~dg~-------------i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~ 327 (479)
... .....++|+++ .|+.++.|.. |++|++.++... ..++.....|...+.++.++ |+
T Consensus 165 --~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~-~~lv~~~~~~~~~~~~~~~SpDG~ 239 (695)
T 2bkl_A 165 --IEG--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK-DTVVHERTGDPTTFLQSDLSRDGK 239 (695)
T ss_dssp --BSC--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG-CEEEECCCCCTTCEEEEEECTTSC
T ss_pred --cCc--ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh-ceEEEecCCCCEEEEEEEECCCCC
Confidence 000 11146778877 7777777665 999999876421 11233344566678888886 77
Q ss_pred EEEEEeCCC----eEEEEECCCCcEEEEEeCCCCCcEEEEEc-CCEEEEEeC----CCeEEEEEcCCCcc--eEEecccc
Q 011711 328 RLYSGSMDN----TIRVWDLDTLEAVMTLNGHTDAPMSLLCW-DQYLLSCSL----DNTIKVWIMTEEGN--LEVAYTHN 396 (479)
Q Consensus 328 ~l~sgs~dg----~I~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~----dg~i~iwd~~~~~~--~~~~~~~~ 396 (479)
+|+..+.++ .|.+||..+++. ..+..+...+....+. ++ ++..+. ++.|.+||+.++.. ...+..+.
T Consensus 240 ~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 317 (695)
T 2bkl_A 240 YLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED 317 (695)
T ss_dssp CEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC
T ss_pred EEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC
Confidence 787777665 777777666554 4444455555554443 56 544443 58899999977653 23444333
Q ss_pred CccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC-CCceeeeee--ccCceEEEEECCCc-eEE----EEcCCCcEEEE
Q 011711 397 EDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP-SFMERGRIF--SRREVRVIETGPDG-LFF----TGDGTGMLSVW 468 (479)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~--~~~~v~~l~~s~~g-~l~----sg~~dg~v~vw 468 (479)
.......+. ++ ++ .++++...|+..++|.++ ++.....+. ....+..++++|++ .++ +....+.|++|
T Consensus 318 ~~~~l~~~~--~~-~~-~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~ 393 (695)
T 2bkl_A 318 SSASLLSVS--IV-GG-HLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKT 393 (695)
T ss_dssp SSCEEEEEE--EE-TT-EEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEE
T ss_pred CCCeEEEEE--EE-CC-EEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEE
Confidence 221122222 22 33 488888899988888665 344444443 25667888999988 555 33346889999
Q ss_pred EeccCC
Q 011711 469 KILAKP 474 (479)
Q Consensus 469 ~~~~~~ 474 (479)
|+.+++
T Consensus 394 d~~~g~ 399 (695)
T 2bkl_A 394 SVSTGK 399 (695)
T ss_dssp ETTTCC
T ss_pred ECCCCc
Confidence 987654
No 195
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.41 E-value=1.1e-10 Score=110.76 Aligned_cols=235 Identities=8% Similarity=-0.017 Sum_probs=151.2
Q ss_pred CCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCC---C--cEEEEECCCCceEEEEecCCceeEEE--eC
Q 011711 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD---G--TVQLWDCHTGQSASVINLGAEVGSLI--CE 242 (479)
Q Consensus 170 d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~D---g--~v~vwd~~~~~~~~~~~~~~~~~~~~--~~ 242 (479)
+..|.+|++.++ +. ..+ ..+..++|+|||++|+.++.+ + .|.+||+.+++......... +..+. ++
T Consensus 42 ~~~l~~~d~~~~-~~-~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspd 114 (347)
T 2gop_A 42 ENTIVIENLKNN-AR-RFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNED 114 (347)
T ss_dssp EEEEEEEETTTC-CE-EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTT
T ss_pred cceEEEEeCCCC-ce-EEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCC
Confidence 578999999877 32 333 568899999999999988754 2 48888999888766655544 44444 47
Q ss_pred CCEEEEEc----------------------------CCeEEEEEcCCCce-EEecCCCccEEEEEEcCC-EEEEEeCCC-
Q 011711 243 GPWVFVGM----------------------------PNVVKAWHIESSAE-FSLDGPVGEVYSMVVANE-MLFAGAQDG- 291 (479)
Q Consensus 243 ~~~l~~~~----------------------------~~~i~v~~~~~~~~-~~~~~~~~~v~~~~~~~~-~l~~g~~dg- 291 (479)
++.|+... ...|.+|++.+++. ..+.. . .+..+.|+++ +++++..++
T Consensus 115 g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~ 192 (347)
T 2gop_A 115 SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREI 192 (347)
T ss_dssp SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCS
T ss_pred CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccc
Confidence 87666542 25789999988876 44443 3 7788899988 666665442
Q ss_pred ------cEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCC--------CeEEEEECCCCcEEEEEeCCCC
Q 011711 292 ------NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMD--------NTIRVWDLDTLEAVMTLNGHTD 357 (479)
Q Consensus 292 ------~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~d--------g~I~iwd~~~~~~~~~~~~h~~ 357 (479)
...+|.+.++. ...+..+ ..+..+..+|+.|+.++.+ ..|.+|| +++.......+..
T Consensus 193 ~~~~~~~~~l~~~d~~~------~~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~ 263 (347)
T 2gop_A 193 IPQYFKFWDIYIWEDGK------EEKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR 263 (347)
T ss_dssp SCCSSCCEEEEEEETTE------EEEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS
T ss_pred cccccccccEEEeCCCc------eEEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc
Confidence 34555544322 1222223 5566665568888777644 4688888 6665444455556
Q ss_pred CcEE-EEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeE-EEeecC
Q 011711 358 APMS-LLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSV-HLYELP 431 (479)
Q Consensus 358 ~v~~-~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v-~iwd~~ 431 (479)
.+.. +.+.+.++++++.++.+++| +.++ ....+......+..+ .++| . ++++++.++.. .+|.++
T Consensus 264 ~~~~~~~~sdg~~~~~~~~~~~~l~-~~~g-~~~~~~~~~~~v~~~----~~s~--~-~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 264 GVGQAKIKDGKVYFTLFEEGSVNLY-IWDG-EIKPIAKGRHWIMGF----DVDE--I-VVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEEEETTEEEEEEEETTEEEEE-EESS-SEEEEECSSSEEEEE----EESS--S-EEEEEECSSSCCEEEEES
T ss_pred ccCCccEEcCcEEEEEecCCcEEEE-EcCC-ceEEEecCCCeEEee----eeeC--c-EEEEEcCCCChHHheEeC
Confidence 6665 66663378888999999999 8743 334443333333223 3456 4 67766666654 777665
No 196
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.41 E-value=1.4e-10 Score=107.57 Aligned_cols=238 Identities=14% Similarity=0.127 Sum_probs=151.3
Q ss_pred eeEEEecccccEEEEEeCCCCC-EEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCC
Q 011711 184 MLAKLEGHKKAVSGIALPLRSD-KLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESS 262 (479)
Q Consensus 184 ~~~~~~~H~~~V~~l~~s~~~~-~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~ 262 (479)
.+..+..+.....+++|+|+++ +++++..++.|..||..++ ...+.
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~------------------------------- 65 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEM------------------------------- 65 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEE-------------------------------
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEE-------------------------------
Confidence 4455666777889999999998 7888888999999998876 33322
Q ss_pred ceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecC-CCCCeEEEEEc--CCEEEE----Ee
Q 011711 263 AEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKG-HTRPVTCLAVG--GKRLYS----GS 333 (479)
Q Consensus 263 ~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-h~~~i~~l~~~--~~~l~s----gs 333 (479)
.+...+.+++++++ ++++...++.|.+||..++... ........ ....+..++++ |+++++ |+
T Consensus 66 ------~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~ 137 (296)
T 3e5z_A 66 ------HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE--SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGI 137 (296)
T ss_dssp ------SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE--EEECEETTEECCCCCCEEECTTSCEEEEECSHHH
T ss_pred ------CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE--EEeeccCCCCCCCCCCEEECCCCCEEEECCcccc
Confidence 23456778888876 4444445688999998665421 11111111 12345667886 777776 33
Q ss_pred -------------CCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcce----EEecc
Q 011711 334 -------------MDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNL----EVAYT 394 (479)
Q Consensus 334 -------------~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~ 394 (479)
..+.|..+|.. ++ +..+..+......++++ ++.+++.+.++.|.+|++.....+ ..+..
T Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 215 (296)
T 3e5z_A 138 DKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTV 215 (296)
T ss_dssp HCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECC
T ss_pred ccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeC
Confidence 13466666665 44 44455566667788876 677777778899999999733322 22211
Q ss_pred ccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEE-CCCc-eEEEEcCCCcEEEEEecc
Q 011711 395 HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIET-GPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~-s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
.......+++ +++|+ +.++. ++.|.+||.. ++.+..+.....+.+++| +|++ .|++++.++ +.-++..+
T Consensus 216 ~~~~p~~i~~----d~~G~-l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 216 EPGKTDGLRV----DAGGL-IWASA--GDGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp SSSCCCSEEE----BTTSC-EEEEE--TTEEEEECTT-SCEEEEEECSSCCCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred CCCCCCeEEE----CCCCC-EEEEc--CCeEEEECCC-CCEEEEEECCCCceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 1222233344 68998 55544 7899999986 666666654333999999 6888 677776653 44444443
Q ss_pred C
Q 011711 473 K 473 (479)
Q Consensus 473 ~ 473 (479)
+
T Consensus 287 ~ 287 (296)
T 3e5z_A 287 R 287 (296)
T ss_dssp C
T ss_pred c
Confidence 3
No 197
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.40 E-value=1.1e-11 Score=116.75 Aligned_cols=292 Identities=11% Similarity=0.073 Sum_probs=188.5
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCce--eE
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV--GS 238 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~--~~ 238 (479)
.+.+..+..++.|..|| .++ +.+..+..+...+.++...+++. |+.++.+ |..+|. +++....+...... ..
T Consensus 30 ~g~l~v~t~~~~l~~~d-~~g-~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~ 103 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-TDG-SVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDF 103 (330)
T ss_dssp TSCEECSSTTTTTEEEC-TTS-CEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCE
T ss_pred CCeEEEEcCCCEEEEEC-CCC-cEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCc
Confidence 45667777788889999 777 55555555566677888777775 4545544 888886 66554433332221 11
Q ss_pred EEeCCCEEEEEcCCeEEEEEcCCCce-EEecCCCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceeeecCCC
Q 011711 239 LICEGPWVFVGMPNVVKAWHIESSAE-FSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT 316 (479)
Q Consensus 239 ~~~~~~~l~~~~~~~i~v~~~~~~~~-~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~ 316 (479)
...++.+.++..++.+..+|.. ++. .........+.++...++ .+++++.++.|..+|.. +.. ........
T Consensus 104 ~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~-----~~~~~~~~ 176 (330)
T 3hxj_A 104 TIFEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTE-----KWRFKTND 176 (330)
T ss_dssp EEETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCE-----EEEEECSS
T ss_pred eEECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCE-----eEEEecCC
Confidence 1225555555568899999998 544 344444444556666644 78889989999999987 432 22333344
Q ss_pred CCeEEEEEc-CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcC-CEEEEEeCCCeEEEEEcCCCcceEEecc
Q 011711 317 RPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD-QYLLSCSLDNTIKVWIMTEEGNLEVAYT 394 (479)
Q Consensus 317 ~~i~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 394 (479)
..+.++..+ +..++.++ +.|..+| .+++.+..+......+.++..++ ..|..++.++.|..+|. ++..+.....
T Consensus 177 ~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~ 252 (330)
T 3hxj_A 177 AITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKT 252 (330)
T ss_dssp CCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred CceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeC
Confidence 556677775 55566666 8899999 78888888776666677777774 37888888888999974 4444443333
Q ss_pred ccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec-cCceEEEEECCCceEEEEcCCCcEEEEEeccC
Q 011711 395 HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS-RREVRVIETGPDGLFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~~ 473 (479)
.........+ ++++. |..++.++.|..+|. +++....... ...+.++...++|.|..++.+|.+.+......
T Consensus 253 ~~~~~~~~~~----~~~g~--l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 253 GKRIESSPVI----GNTDT--IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp SSCCCSCCEE----CTTSC--EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC---
T ss_pred CCCccccceE----cCCCe--EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEecccc
Confidence 2222222222 35665 556778889999996 6666655543 45577888888888888999999999887765
Q ss_pred CCC
Q 011711 474 PNA 476 (479)
Q Consensus 474 ~~~ 476 (479)
+.+
T Consensus 326 ~~~ 328 (330)
T 3hxj_A 326 HHH 328 (330)
T ss_dssp ---
T ss_pred ccc
Confidence 543
No 198
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.39 E-value=3.1e-10 Score=105.21 Aligned_cols=223 Identities=9% Similarity=-0.039 Sum_probs=155.4
Q ss_pred CeEEEeccCC-eeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 011711 153 KNVCYHWLSG-NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN 231 (479)
Q Consensus 153 ~~~c~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~ 231 (479)
+.+++.+... .++++..++.|..|+..++ ...+..+...+.+++++++|+++++...++.|.+||..+++......
T Consensus 31 eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~ 107 (296)
T 3e5z_A 31 EGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIAD 107 (296)
T ss_dssp EEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEEC
T ss_pred cCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEee
Confidence 4566666666 5778888999999999876 55667788889999999999988888778999999998888654432
Q ss_pred cC-----Cce--eEEEeCCCEEEEE----c--------------CCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EE
Q 011711 232 LG-----AEV--GSLICEGPWVFVG----M--------------PNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--ML 284 (479)
Q Consensus 232 ~~-----~~~--~~~~~~~~~l~~~----~--------------~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l 284 (479)
.. ... ..+.++|+++++. . .+.|..++.. +.......+......++++++ .+
T Consensus 108 ~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~l 186 (296)
T 3e5z_A 108 SFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLL 186 (296)
T ss_dssp EETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEE
T ss_pred ccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEE
Confidence 11 111 2334578877762 1 3456666655 555555566677889999987 56
Q ss_pred EEEeCCCcEEEEEccCCCCCcc-cceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEE
Q 011711 285 FAGAQDGNILVWKGIPNTQNPF-QLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMS 361 (479)
Q Consensus 285 ~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~ 361 (479)
++.+.++.|.+|++..... . .....+..+...+.+++++ |++ +++. ++.|.+||.+ ++.+..+..+.. +.+
T Consensus 187 v~~~~~~~i~~~~~~~~g~--~~~~~~~~~~~~~~p~~i~~d~~G~l-~v~~-~~~v~~~~~~-g~~~~~~~~~~~-~~~ 260 (296)
T 3e5z_A 187 VSDTGDNATHRYCLNARGE--TEYQGVHFTVEPGKTDGLRVDAGGLI-WASA-GDGVHVLTPD-GDELGRVLTPQT-TSN 260 (296)
T ss_dssp EEETTTTEEEEEEECSSSC--EEEEEEEECCSSSCCCSEEEBTTSCE-EEEE-TTEEEEECTT-SCEEEEEECSSC-CCE
T ss_pred EEeCCCCeEEEEEECCCCc--CcCCCeEeeCCCCCCCeEEECCCCCE-EEEc-CCeEEEECCC-CCEEEEEECCCC-cee
Confidence 7777789999999873211 1 1112223355566778887 554 4444 8899999986 788888887777 888
Q ss_pred EEEc---CCEEEEEeCCCeEEEEEcCCC
Q 011711 362 LLCW---DQYLLSCSLDNTIKVWIMTEE 386 (479)
Q Consensus 362 ~~~~---~~~l~s~s~dg~i~iwd~~~~ 386 (479)
+.+. ++.|++++.++ +.-++..+.
T Consensus 261 ~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 261 LCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp EEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred EEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 8884 46788887764 555555544
No 199
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.38 E-value=5.6e-09 Score=99.98 Aligned_cols=266 Identities=10% Similarity=-0.046 Sum_probs=170.2
Q ss_pred EeCCCCCEEEEEeC--CC---cEEEEECCCCceEEEEecCCc-eeEEEeCCCEEEEEc-----------CCeEEEEEcCC
Q 011711 199 ALPLRSDKLYSGSR--DG---TVQLWDCHTGQSASVINLGAE-VGSLICEGPWVFVGM-----------PNVVKAWHIES 261 (479)
Q Consensus 199 ~~s~~~~~l~s~s~--Dg---~v~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~-----------~~~i~v~~~~~ 261 (479)
...|++++++.... .. +|.++|..+++.+..+..+.. -..+.++++.+++.. ++.|.+||..+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 34577887777764 22 889999999999888876543 445567999888874 57899999988
Q ss_pred CceEEec-CC-------CccEEEEEEcCC--EEEEEeC--CCcEEEEEccCCCCCcccceee-ecCCCCCeEEEEEcCCE
Q 011711 262 SAEFSLD-GP-------VGEVYSMVVANE--MLFAGAQ--DGNILVWKGIPNTQNPFQLAAL-LKGHTRPVTCLAVGGKR 328 (479)
Q Consensus 262 ~~~~~~~-~~-------~~~v~~~~~~~~--~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~-~~~h~~~i~~l~~~~~~ 328 (479)
.+..... -. ...-..+.++++ +|+++.. ++.|.++| .+++. ... +.. ...+.-.......
T Consensus 107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~-----~~~~i~~-~~~~~~~~~~~~~ 179 (373)
T 2mad_H 107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS-----DDQLLSS-PTCYHIHPGAPST 179 (373)
T ss_pred CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE-----EeEEcCC-CceEEEEeCCCce
Confidence 7665321 11 122347788877 7777663 57899999 77642 333 221 1112111122556
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEEe-----CCCCCc-EE--EEEcCCEEEEEeCCCeEEEEEcCCCcce--EEeccccC-
Q 011711 329 LYSGSMDNTIRVWDLDTLEAVMTLN-----GHTDAP-MS--LLCWDQYLLSCSLDNTIKVWIMTEEGNL--EVAYTHNE- 397 (479)
Q Consensus 329 l~sgs~dg~I~iwd~~~~~~~~~~~-----~h~~~v-~~--~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~- 397 (479)
+++.+.||.+.++|. +++.+.... ....++ .. ....+..++..+.++.+.+.|+...... ..+.....
T Consensus 180 ~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~ 258 (373)
T 2mad_H 180 FYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGG 258 (373)
T ss_pred EEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCc
Confidence 777889999999999 887764332 111111 11 1222444444447789999998654321 11110000
Q ss_pred -------ccceEEEeeeeCCCCCcEEEEEe---------CCCeEEEeecCCCceeeeeeccCceEEEEECCCc--eEEEE
Q 011711 398 -------DHGVLALGGLNDPDGNPVLICSC---------NDDSVHLYELPSFMERGRIFSRREVRVIETGPDG--LFFTG 459 (479)
Q Consensus 398 -------~~~~~~~~~~~~~~~~~~l~s~~---------~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sg 459 (479)
+... .....+|+++.++++.. .++.|.++|..+++.+..+........++|+||| +++++
T Consensus 259 ~~~~~~~p~g~--~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~ 336 (373)
T 2mad_H 259 RKADTWRPGGW--QQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYAL 336 (373)
T ss_pred ccccceecCce--EeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEE
Confidence 0111 11223688885555543 2468999999999999999877789999999999 56666
Q ss_pred c-CCCcEEEEEeccCC
Q 011711 460 D-GTGMLSVWKILAKP 474 (479)
Q Consensus 460 ~-~dg~v~vw~~~~~~ 474 (479)
. .++.|.++|..+.+
T Consensus 337 ~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 337 SAGTEVLHIYDAGAGD 352 (373)
T ss_pred cCCCCeEEEEECCCCC
Confidence 6 58999999998755
No 200
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.34 E-value=2.8e-09 Score=102.88 Aligned_cols=260 Identities=12% Similarity=0.033 Sum_probs=171.4
Q ss_pred CeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEe----------CCCcEEEEECCCCceEEEEecC-------
Q 011711 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGS----------RDGTVQLWDCHTGQSASVINLG------- 233 (479)
Q Consensus 171 ~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s----------~Dg~v~vwd~~~~~~~~~~~~~------- 233 (479)
+.|.++|..+. +.+.++..-..+ .++++||+++|+.+. .++.|.++|..+++.+..+..+
T Consensus 99 ~~VsVID~~t~-~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~ 175 (426)
T 3c75_H 99 TQQFVIDGSTG-RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV 175 (426)
T ss_dssp EEEEEEETTTT-EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred CeEEEEECCCC-EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc
Confidence 79999999988 888888766666 899999999998886 4679999999999999988764
Q ss_pred ---CceeEEEeCCCEEEEEc---CCeEEEEEcCCCceEEecCCCccEEEEEEc-CCEEEEEeCCCcEEEEEccCCCCCcc
Q 011711 234 ---AEVGSLICEGPWVFVGM---PNVVKAWHIESSAEFSLDGPVGEVYSMVVA-NEMLFAGAQDGNILVWKGIPNTQNPF 306 (479)
Q Consensus 234 ---~~~~~~~~~~~~l~~~~---~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~ 306 (479)
.....+.+++++++++. ++.|.++|..+.+......-.+. ..+... +..+++.+.||.+.+.+...++.. .
T Consensus 176 g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~-~ 253 (426)
T 3c75_H 176 GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-YHIFPASPTVFYMNCRDGSLARVDFADGETK-V 253 (426)
T ss_dssp SCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEETTSSEEEEECCTTCCE-E
T ss_pred CCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-eeeccCCCcEEEEEcCCCCEEEEECCCCcEE-E
Confidence 12345667999888863 57899999999887643222121 122222 336777888999999998444321 0
Q ss_pred cceeeecCCCCCeE-EEEEc--CCEEEEEeCCCeEEEEECCCCcEE--EEEe------------CCCCCcEEEEEcCCEE
Q 011711 307 QLAALLKGHTRPVT-CLAVG--GKRLYSGSMDNTIRVWDLDTLEAV--MTLN------------GHTDAPMSLLCWDQYL 369 (479)
Q Consensus 307 ~~~~~~~~h~~~i~-~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~--~~~~------------~h~~~v~~~~~~~~~l 369 (479)
.....+.....++. .+.+. +..++..+..+.|.+.|+...... ..+. ........+..+++.+
T Consensus 254 ~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rl 333 (426)
T 3c75_H 254 TNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRI 333 (426)
T ss_dssp EECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEE
T ss_pred EeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEE
Confidence 00011111122211 13333 666666678899999998765432 1111 0111124455556666
Q ss_pred EEEeC----------CCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEe-CCCeEEEeecCCCceeee
Q 011711 370 LSCSL----------DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC-NDDSVHLYELPSFMERGR 438 (479)
Q Consensus 370 ~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~ 438 (479)
+.... ++.|.++|..+.+.+..+..... ...+.++|+|+.++++.. .++.|.++|+.+++.+.+
T Consensus 334 yVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~-----P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 334 YLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHE-----IDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE-----ECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEecccccccccCCCCEEEEEECCCCeEEEEEECCCC-----cCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence 65532 35799999999887776654332 233334699984555555 699999999999999988
Q ss_pred ee
Q 011711 439 IF 440 (479)
Q Consensus 439 ~~ 440 (479)
+.
T Consensus 409 I~ 410 (426)
T 3c75_H 409 VD 410 (426)
T ss_dssp EC
T ss_pred ec
Confidence 73
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.33 E-value=1.9e-10 Score=120.91 Aligned_cols=241 Identities=11% Similarity=0.018 Sum_probs=147.7
Q ss_pred cccccEEEEEeCCCCCEEEEEeCC-----CcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCce
Q 011711 190 GHKKAVSGIALPLRSDKLYSGSRD-----GTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAE 264 (479)
Q Consensus 190 ~H~~~V~~l~~s~~~~~l~s~s~D-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~ 264 (479)
+|...+..++|||||++|+.++.+ ..|++||+.+++.+.....
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~-------------------------------- 207 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK-------------------------------- 207 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE--------------------------------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC--------------------------------
Confidence 344578899999999999887654 4699999998886542110
Q ss_pred EEecCCCccEEEEEEcCC-EEEEEeCCC--------------cEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CC
Q 011711 265 FSLDGPVGEVYSMVVANE-MLFAGAQDG--------------NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GK 327 (479)
Q Consensus 265 ~~~~~~~~~v~~~~~~~~-~l~~g~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~ 327 (479)
...+..++|+++ .|+.+..++ .|++|++.++... ..++.....+...+..+.++ |+
T Consensus 208 ------~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~-~~lv~~~~~~~~~~~~~~~SpDG~ 280 (741)
T 1yr2_A 208 ------WVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA-DQPVFATPELPKRGHGASVSSDGR 280 (741)
T ss_dssp ------EEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGG-CEEEECCTTCTTCEEEEEECTTSC
T ss_pred ------CceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchh-CEEEeccCCCCeEEEEEEECCCCC
Confidence 001124455554 455444433 4889998765421 11222223344457888886 77
Q ss_pred EEEEEeCCC-----eEEEEECCCC--cEEEEEeCCCCCcEE-EEEcCCEEEEEeCC----CeEEEEEcCCC-cceEEecc
Q 011711 328 RLYSGSMDN-----TIRVWDLDTL--EAVMTLNGHTDAPMS-LLCWDQYLLSCSLD----NTIKVWIMTEE-GNLEVAYT 394 (479)
Q Consensus 328 ~l~sgs~dg-----~I~iwd~~~~--~~~~~~~~h~~~v~~-~~~~~~~l~s~s~d----g~i~iwd~~~~-~~~~~~~~ 394 (479)
+|+..+.++ .|++||+.++ +....+..+...+.. +..+++.|+..+.+ +.|.+||+.+. .....+..
T Consensus 281 ~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~ 360 (741)
T 1yr2_A 281 WVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP 360 (741)
T ss_dssp EEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC
T ss_pred EEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec
Confidence 877776543 8999999887 414555555544443 33458888777763 45999998775 23334433
Q ss_pred ccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC-CCceeeeee--ccCceEEEEECCCc-eEE----EEcCCCcEE
Q 011711 395 HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP-SFMERGRIF--SRREVRVIETGPDG-LFF----TGDGTGMLS 466 (479)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~--~~~~v~~l~~s~~g-~l~----sg~~dg~v~ 466 (479)
+.... ...+ .++ +..++++...|+..+||.++ ++.....+. ....+..+.++|++ .|+ +....+.|+
T Consensus 361 ~~~~~-l~~~--~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~ 435 (741)
T 1yr2_A 361 ESKDN-LESV--GIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVL 435 (741)
T ss_dssp CCSSE-EEEE--EEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEE
T ss_pred CCCCe-EEEE--EEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEE
Confidence 33221 1122 222 44588888889987777654 344444443 35678899999988 444 233468999
Q ss_pred EEEeccCC
Q 011711 467 VWKILAKP 474 (479)
Q Consensus 467 vw~~~~~~ 474 (479)
+||+.+++
T Consensus 436 ~~d~~tg~ 443 (741)
T 1yr2_A 436 ALDPATAK 443 (741)
T ss_dssp EEETTTTE
T ss_pred EEECCCCc
Confidence 99987654
No 202
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.31 E-value=4.8e-10 Score=102.20 Aligned_cols=234 Identities=11% Similarity=0.018 Sum_probs=146.6
Q ss_pred CeEEEeccCCeeE-eCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 011711 153 KNVCYHWLSGNCV-KGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN 231 (479)
Q Consensus 153 ~~~c~~~~~~~~~-~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~ 231 (479)
..+++...+...+ +...++.|.+|+..+.. .......+...+.+++++++++++++.. ++.|.+||....... .+.
T Consensus 27 ~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~ 103 (270)
T 1rwi_B 27 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTG-TTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLP 103 (270)
T ss_dssp EEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECC
T ss_pred cceEECCCCCEEEEccCCCCcEEEecCCCcc-cceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eee
Confidence 3556666555566 55678899999986552 2211123445788999999999666665 889999997754322 111
Q ss_pred cCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccce
Q 011711 232 LGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLA 309 (479)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~ 309 (479)
......+..++++++ ++++...++.|.+|+..+... .
T Consensus 104 ------------------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~-----~ 142 (270)
T 1rwi_B 104 ------------------------------------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-----T 142 (270)
T ss_dssp ------------------------------------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC-----E
T ss_pred ------------------------------------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee-----E
Confidence 012245678888766 555555678899997544321 1
Q ss_pred eeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCC
Q 011711 310 ALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTE 385 (479)
Q Consensus 310 ~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~ 385 (479)
.........+.+++++ ++++++...++.|.+||..+.........+...+..+.++ +..+++...++.|.+||...
T Consensus 143 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 143 VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 222 (270)
T ss_dssp ECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred eeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence 1122233456778886 6666666678899999998776554433344567788887 45666666688999999865
Q ss_pred CcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCce
Q 011711 386 EGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFME 435 (479)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 435 (479)
............... .+..+++|+ ++++...++.|+++++...+.
T Consensus 223 ~~~~~~~~~~~~~p~----~i~~~~~g~-l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 223 TTSTVLPFTGLNTPL----AVAVDSDRT-VYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp SCCEECCCCSCSCEE----EEEECTTCC-EEEEEGGGTEEEEECCCGGGS
T ss_pred CcceeeccCCCCCce----eEEECCCCC-EEEEECCCCEEEEEcCCCccc
Confidence 443221111111222 233468887 888888899999999876554
No 203
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.31 E-value=2.2e-09 Score=110.99 Aligned_cols=297 Identities=14% Similarity=0.091 Sum_probs=189.1
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEeccccc----------E-EEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEE
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKA----------V-SGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV 229 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~----------V-~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~ 229 (479)
.+.+..++.++.|..+|..++ +.+.+++..... + ..+++ ++..++.++.|+.|..+|..+|+.+..
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTG-NRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWH 153 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTT-EEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCC-cEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 455666666789999999998 777766543211 0 12222 467899999999999999999999998
Q ss_pred EecC-C-----ce--eEEEeCCCEEEEEc------CCeEEEEEcCCCceEE-ecC--CC--------------------c
Q 011711 230 INLG-A-----EV--GSLICEGPWVFVGM------PNVVKAWHIESSAEFS-LDG--PV--------------------G 272 (479)
Q Consensus 230 ~~~~-~-----~~--~~~~~~~~~l~~~~------~~~i~v~~~~~~~~~~-~~~--~~--------------------~ 272 (479)
+... . .+ ..+..++.+++... ++.|..+|..+++.+- ... .. +
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp EETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred ecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 8865 2 11 11223444444332 6899999999998752 211 11 0
Q ss_pred ----------cEEEEEEcCC--EEEEEeCCC-------------------cEEEEEccCCCCCcccceeeec--CC----
Q 011711 273 ----------EVYSMVVANE--MLFAGAQDG-------------------NILVWKGIPNTQNPFQLAALLK--GH---- 315 (479)
Q Consensus 273 ----------~v~~~~~~~~--~l~~g~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~--~h---- 315 (479)
....++++++ .++++..++ .|..+|..+++. ...++ .|
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~-----~W~~~~~~~d~wd 308 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKY-----KWHYQETPGDNWD 308 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE-----EEEEESSTTCCSC
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCE-----EEEEecCCCcccc
Confidence 0123566554 777777664 499999888753 22222 12
Q ss_pred ----CCCe-EEEEEcC---CEEEEEeCCCeEEEEECCCCcEEEEEeCCCCC-----------c-----------------
Q 011711 316 ----TRPV-TCLAVGG---KRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDA-----------P----------------- 359 (479)
Q Consensus 316 ----~~~i-~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~-----------v----------------- 359 (479)
..++ ..+..+| ..++.++.+|.|+++|.++++.+..+...... +
T Consensus 309 ~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 309 YTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred cccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 1222 2233355 67999999999999999999998877532111 0
Q ss_pred -------EEEEEc--CCEEEEEeC-------------------------------------------CCeEEEEEcCCCc
Q 011711 360 -------MSLLCW--DQYLLSCSL-------------------------------------------DNTIKVWIMTEEG 387 (479)
Q Consensus 360 -------~~~~~~--~~~l~s~s~-------------------------------------------dg~i~iwd~~~~~ 387 (479)
..++++ ..++++... .|.|..||+.+++
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 023333 456665433 2789999999988
Q ss_pred ceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCc--eEEEEECCCc--eEEEEcC--
Q 011711 388 NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRRE--VRVIETGPDG--LFFTGDG-- 461 (479)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--v~~l~~s~~g--~l~sg~~-- 461 (479)
.+........ .....+. ..+. +++.++.|+.+++||..+++.+..+..... ..-+.+..+| +++..+.
T Consensus 469 ~~W~~~~~~~-~~~g~~~----~~g~-~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~ 542 (677)
T 1kb0_A 469 AAWSVEHVSP-WNGGTLT----TAGN-VVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWG 542 (677)
T ss_dssp EEEEEEESSS-CCCCEEE----ETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCC
T ss_pred EEeecCCCCC-CcCcceE----eCCC-EEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCC
Confidence 7666543322 1222222 4555 677789999999999999999998875332 3345556777 4443222
Q ss_pred --------------CCcEEEEEec
Q 011711 462 --------------TGMLSVWKIL 471 (479)
Q Consensus 462 --------------dg~v~vw~~~ 471 (479)
.+.+.+|.+.
T Consensus 543 ~~~~~~~~~~~~~~~~~l~~f~l~ 566 (677)
T 1kb0_A 543 GVYGLAARATERQGPGTVYTFVVG 566 (677)
T ss_dssp HHHHHHCCSCSCCCCCEEEEEEET
T ss_pred ccccccccccccCCCCeEEEEecc
Confidence 4788888886
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.31 E-value=5.1e-09 Score=99.27 Aligned_cols=266 Identities=10% Similarity=0.020 Sum_probs=177.3
Q ss_pred EEeCCCCCEEEEEeC-----CCcEEEEECCCCceEEEEecCCce-eEEEeCCCEEEEEc-----------CCeEEEEEcC
Q 011711 198 IALPLRSDKLYSGSR-----DGTVQLWDCHTGQSASVINLGAEV-GSLICEGPWVFVGM-----------PNVVKAWHIE 260 (479)
Q Consensus 198 l~~s~~~~~l~s~s~-----Dg~v~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~-----------~~~i~v~~~~ 260 (479)
....|+++.++.... ++.|.+.|..+++.+..+..+... ..+.++++.++++. ++.|.+||..
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 445789999888876 689999999999999999865443 34446888777653 5789999999
Q ss_pred CCceEEec--CC------CccEEEEEEcCC--EEEEEeC--CCcEEEEEccCCCCCcccceeeecCCCCCeEEEEE-cCC
Q 011711 261 SSAEFSLD--GP------VGEVYSMVVANE--MLFAGAQ--DGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV-GGK 327 (479)
Q Consensus 261 ~~~~~~~~--~~------~~~v~~~~~~~~--~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~-~~~ 327 (479)
+.+..... +. ...-..+.++++ +++++.. ++.|.++|+.+.+ .+..+.... ...+.. ...
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~-----vv~tI~v~g--~~~~~P~g~~ 190 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA-----FKRMLDVPD--CYHIFPTAPD 190 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE-----EEEEEECCS--EEEEEEEETT
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc-----EEEEEECCC--cceeecCCCc
Confidence 98875321 11 113446788877 6666653 6899999998864 344443211 112222 266
Q ss_pred EEEEEeCCCeEEEEECCC-CcEEEEEeCCC----CCcE-EEEEc--CCEEEEEeCCCeEEEEEcCCCcc--eEEec--c-
Q 011711 328 RLYSGSMDNTIRVWDLDT-LEAVMTLNGHT----DAPM-SLLCW--DQYLLSCSLDNTIKVWIMTEEGN--LEVAY--T- 394 (479)
Q Consensus 328 ~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~----~~v~-~~~~~--~~~l~s~s~dg~i~iwd~~~~~~--~~~~~--~- 394 (479)
.+++.+.||++.+.++.+ ++...+...+. ..+. ...+. +..++..+.+|.|.+.|+.+... ...+. .
T Consensus 191 ~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~ 270 (386)
T 3sjl_D 191 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTE 270 (386)
T ss_dssp EEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCH
T ss_pred eeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecccc
Confidence 788889999999999986 66543332221 1121 12332 33444466789999999976542 11111 0
Q ss_pred -------ccCccceEEEeeeeCCCCCcEEEEEeC---------CCeEEEeecCCCceeeeeeccCceEEEEECCCc--eE
Q 011711 395 -------HNEDHGVLALGGLNDPDGNPVLICSCN---------DDSVHLYELPSFMERGRIFSRREVRVIETGPDG--LF 456 (479)
Q Consensus 395 -------~~~~~~~~~~~~~~~~~~~~~l~s~~~---------dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g--~l 456 (479)
.......+.+ +++++.++++-.. .+.|.++|+.+++.+.++.....+..+++++|+ +|
T Consensus 271 ~~~~~g~~p~g~q~~a~----~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~l 346 (386)
T 3sjl_D 271 AERADGWRPGGWQQVAY----HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLL 346 (386)
T ss_dssp HHHHTTEEECSSSCEEE----ETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEE
T ss_pred ccccccccCCCcceeeE----CCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEE
Confidence 0112233444 4788766665431 257999999999999999888899999999998 45
Q ss_pred EE-EcCCCcEEEEEeccCC
Q 011711 457 FT-GDGTGMLSVWKILAKP 474 (479)
Q Consensus 457 ~s-g~~dg~v~vw~~~~~~ 474 (479)
++ ...++.|.++|..+.+
T Consensus 347 y~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 347 YALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp EEEETTTTEEEEEETTTCC
T ss_pred EEEcCCCCeEEEEECCCCc
Confidence 55 5669999999987754
No 205
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.29 E-value=5.9e-09 Score=98.20 Aligned_cols=262 Identities=8% Similarity=0.012 Sum_probs=169.8
Q ss_pred CCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEeCCCC
Q 011711 91 KSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDEC 170 (479)
Q Consensus 91 ~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~d 170 (479)
..+++++|++++..+++.+.+++++.|... +.. .+.... .....+++.+.+..++++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~~-----------~~~~~~~~~~~g~l~~~~~~~ 65 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE-PWL--------EISKKG-----------LQLEGLNFDRQGQLFLLDVFE 65 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-EEE--------EEESSC-----------CCEEEEEECTTSCEEEEETTT
T ss_pred cccceeeecCCccceeEEeecccCcccccc-eeE--------EEeccC-----------ccccCcEECCCCCEEEEECCC
Confidence 457899999999999998889999999211 000 000000 011344555555555677888
Q ss_pred CeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCC----CcEEEEECCCCceEEEEe---cCCceeEEE--e
Q 011711 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD----GTVQLWDCHTGQSASVIN---LGAEVGSLI--C 241 (479)
Q Consensus 171 ~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~D----g~v~vwd~~~~~~~~~~~---~~~~~~~~~--~ 241 (479)
+.|.+||.+++ +.......+...+.+++++++++++++...+ +.|.+||.++++....+. ....+..+. +
T Consensus 66 ~~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~ 144 (333)
T 2dg1_A 66 GNIFKINPETK-EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS 144 (333)
T ss_dssp CEEEEECTTTC-CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT
T ss_pred CEEEEEeCCCC-cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC
Confidence 99999999877 4444344567889999999999988887776 689999998887654433 122344444 3
Q ss_pred CCCEEEEEcC-------CeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEE-EeCCCcEEEEEccCCCCCcc----c
Q 011711 242 EGPWVFVGMP-------NVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFA-GAQDGNILVWKGIPNTQNPF----Q 307 (479)
Q Consensus 242 ~~~~l~~~~~-------~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~-g~~dg~i~iwd~~~~~~~~~----~ 307 (479)
+++++++... +.|..++..+++...+......+..++++++ .+++ ...++.|.+||+.+...... .
T Consensus 145 ~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~ 224 (333)
T 2dg1_A 145 KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGAT 224 (333)
T ss_dssp TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEE
T ss_pred CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccce
Confidence 6777776653 4566666665555444333445788999887 4544 45678999999864211100 0
Q ss_pred ceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCC------CcEEEEEc--CCEEEEEeCC
Q 011711 308 LAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD------APMSLLCW--DQYLLSCSLD 375 (479)
Q Consensus 308 ~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~------~v~~~~~~--~~~l~s~s~d 375 (479)
....+.++ ..+..++++ ++++++...++.|.+||. +++.+..+..+.. .+.++.+. ++.|+.++.+
T Consensus 225 ~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 225 IPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 01112222 456778886 677777777899999998 5677777765533 56777775 4567665555
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.27 E-value=3.4e-08 Score=91.08 Aligned_cols=266 Identities=10% Similarity=0.009 Sum_probs=162.8
Q ss_pred eEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 011711 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG 233 (479)
Q Consensus 154 ~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~ 233 (479)
.++....+...++...++.|.+|+.. +......+..+...+.++++.+++++.++...++.|..+|.. ++.. .+..
T Consensus 24 ~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~- 99 (300)
T 2qc5_A 24 GITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPL- 99 (300)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEEC-
T ss_pred eeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecC-
Confidence 44555555556666678899999987 422222233345679999999999988877778889999987 5532 2211
Q ss_pred CceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceee
Q 011711 234 AEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAAL 311 (479)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 311 (479)
......+..++++++ ++++...++.|..+|.. +.. . ...
T Consensus 100 ----------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~---~-~~~ 140 (300)
T 2qc5_A 100 ----------------------------------PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI---Y-EYD 140 (300)
T ss_dssp ----------------------------------SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE---E-EEE
T ss_pred ----------------------------------CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE---E-Ecc
Confidence 112245677888765 44444457889999876 321 1 112
Q ss_pred ecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEE-EeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCC
Q 011711 312 LKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMT-LNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEE 386 (479)
Q Consensus 312 ~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~-~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~ 386 (479)
+......+.+++++ ++..++...++.|..+|. +++.... ...+...+..+.++ +.+.++....+.|.+||. ++
T Consensus 141 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g 218 (300)
T 2qc5_A 141 LPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TG 218 (300)
T ss_dssp CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC
T ss_pred CCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CC
Confidence 23345578889886 665555556789999998 5554432 22334557778776 555555556778999998 33
Q ss_pred cceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeee-ee-ccCceEEEEECCCceEEEEcCCCc
Q 011711 387 GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGR-IF-SRREVRVIETGPDGLFFTGDGTGM 464 (479)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~-~~~~v~~l~~s~~g~l~sg~~dg~ 464 (479)
.... ......... ...+..+++|. +.++...++.|..||.. ++.... +. ....+.++++.++|.|..++.+ .
T Consensus 219 ~~~~-~~~~~~~~~--~~~i~~d~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~ 292 (300)
T 2qc5_A 219 EISE-YDIPTPNAR--PHAITAGKNSE-IWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALKC-K 292 (300)
T ss_dssp CEEE-EECSSTTCC--EEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECSS-E
T ss_pred cEEE-EECCCCCCC--ceEEEECCCCC-EEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEccC-c
Confidence 3222 211111111 22333468887 66666567899999984 433221 22 2456899999999944444444 6
Q ss_pred EEEEEe
Q 011711 465 LSVWKI 470 (479)
Q Consensus 465 v~vw~~ 470 (479)
|..++.
T Consensus 293 i~~~~p 298 (300)
T 2qc5_A 293 IGKLNL 298 (300)
T ss_dssp EEEEEE
T ss_pred eEEeCC
Confidence 666654
No 207
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.25 E-value=1.8e-09 Score=102.51 Aligned_cols=266 Identities=9% Similarity=0.008 Sum_probs=175.1
Q ss_pred eEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEe----------CCCcEEEEECCCCceEEEEecC--------
Q 011711 172 FWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGS----------RDGTVQLWDCHTGQSASVINLG-------- 233 (479)
Q Consensus 172 ~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s----------~Dg~v~vwd~~~~~~~~~~~~~-------- 233 (479)
.|.+.|..+. +.+.++..-..+ .++++||+++++.+. .+++|.+||+.+++.+..+..+
T Consensus 47 ~vsvID~~t~-~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCG-VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTT-EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCC-eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 8899999988 888888766666 799999999999886 3789999999999999998764
Q ss_pred --CceeEEEeCCCEEEEEc---CCeEEE--EEcCCCceEEecCCCccEEEEEEcCC-EEEEEeCCCcEEEEEccC-----
Q 011711 234 --AEVGSLICEGPWVFVGM---PNVVKA--WHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIP----- 300 (479)
Q Consensus 234 --~~~~~~~~~~~~l~~~~---~~~i~v--~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~----- 300 (479)
.....+.++|++++++. .+.+.+ +|..+ ...+.-. +. ..+...++ .+++.+.||.+.+.|+.+
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~-~~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSA-SC-FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECS-SC-CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEECC-Cc-eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 23456667898888763 467888 88877 2222111 11 11222333 666777899999999876
Q ss_pred CCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCc--EEEEEeC------------CCCCcEEEEEcC
Q 011711 301 NTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLE--AVMTLNG------------HTDAPMSLLCWD 366 (479)
Q Consensus 301 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~------------h~~~v~~~~~~~ 366 (479)
++.. ......+.....+. . ..++..++..+. +.|.+.|+.+.. .+..+.. .......+..++
T Consensus 200 ~~v~-~~~t~~i~vg~~P~-~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg 275 (368)
T 1mda_H 200 GIVG-AQCTGAQNCSSQAA-Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT 275 (368)
T ss_dssp EECC-CCSCTTSCBCSCCE-E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT
T ss_pred CeEE-EEeeeeeeCCCCcc-c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCC
Confidence 2110 00000111123343 2 223566656566 999999997543 2332221 111124455557
Q ss_pred CEEEEEeC---------CCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEe-CCCeEEEeecCCCcee
Q 011711 367 QYLLSCSL---------DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC-NDDSVHLYELPSFMER 436 (479)
Q Consensus 367 ~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~ 436 (479)
+.++.+.. ++.+.++|+.+.+.+..+.... ....+ .++|+|+.++++.. .++.|.++|+.+++.+
T Consensus 276 ~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi----~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 276 DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAI----IAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEE----EECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred CEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceE----EECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 77765432 2356699999987766554433 22333 34699987788887 6999999999999999
Q ss_pred eeeeccCceEEEEECCC
Q 011711 437 GRIFSRREVRVIETGPD 453 (479)
Q Consensus 437 ~~~~~~~~v~~l~~s~~ 453 (479)
..+........+++.+.
T Consensus 351 ~~I~vg~~P~~i~~~~~ 367 (368)
T 1mda_H 351 SSVELDKGPESLSVQNE 367 (368)
T ss_dssp EECCCCSCCCEEECCCC
T ss_pred EEEECCCCCCEEEeecC
Confidence 99987777778877653
No 208
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.25 E-value=1.5e-07 Score=86.72 Aligned_cols=263 Identities=8% Similarity=-0.033 Sum_probs=163.0
Q ss_pred eEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec-
Q 011711 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL- 232 (479)
Q Consensus 154 ~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~- 232 (479)
.++....+...++...++.|.+||.. +......+..+...+.++++++++.++++...++.|..||.. ++. ..+..
T Consensus 19 ~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~ 95 (299)
T 2z2n_A 19 GITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLP 95 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECS
T ss_pred ceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCC
Confidence 44555555555555567899999988 422222223356789999999999988887778899999986 443 33332
Q ss_pred --CCceeEEEe--CCCEEEEE-cCCeEEEEEcCCCceEEe--cCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCC
Q 011711 233 --GAEVGSLIC--EGPWVFVG-MPNVVKAWHIESSAEFSL--DGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQ 303 (479)
Q Consensus 233 --~~~~~~~~~--~~~~l~~~-~~~~i~v~~~~~~~~~~~--~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~ 303 (479)
......+.. ++.+.++. .++.|..|+. ++..... ......+..++++++ ++++...++.|..||. ++..
T Consensus 96 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~ 173 (299)
T 2z2n_A 96 NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI 173 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE
Confidence 233444444 56666665 4678999998 4444332 234567889999876 4444455789999998 4431
Q ss_pred CcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEE-EeCCCCCcEEEEEc--CCEEEEEeCCCeE
Q 011711 304 NPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMT-LNGHTDAPMSLLCW--DQYLLSCSLDNTI 378 (479)
Q Consensus 304 ~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~-~~~h~~~v~~~~~~--~~~l~s~s~dg~i 378 (479)
. ......+...+.+++++ +.++++...++.|.+||. +++.... +..+...+.++.++ +..+++...++.|
T Consensus 174 ---~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 248 (299)
T 2z2n_A 174 ---T-EFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKI 248 (299)
T ss_dssp ---E-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEE
T ss_pred ---E-EeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceE
Confidence 1 11123345568889986 666665556889999999 6664332 23344667888887 5655555577899
Q ss_pred EEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCC
Q 011711 379 KVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSF 433 (479)
Q Consensus 379 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 433 (479)
..||.. + .+..+......... ..+.. +++. +.++.. .+.+..++.++.
T Consensus 249 ~~~d~~-g-~~~~~~~~~~~~~~--~~i~~-~~g~-l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 249 GRLTSN-N-IIEEYPIQIKSAEP--HGICF-DGET-IWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EEEETT-T-EEEEEECSSSSCCE--EEEEE-CSSC-EEEEET-TTEEEEEEEC--
T ss_pred EEECCC-C-ceEEEeCCCCCCcc--ceEEe-cCCC-EEEEec-CCcEEEEEcCcc
Confidence 999983 3 23333221111122 22233 7777 555443 667777877654
No 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.25 E-value=5.9e-09 Score=97.15 Aligned_cols=233 Identities=11% Similarity=0.111 Sum_probs=146.6
Q ss_pred EecccccEEEEEeCCCCCEEEE-------EeCCCcEEEEECCCCceEEEEe-----cCCceeEEEe--C-CCEEEEEcCC
Q 011711 188 LEGHKKAVSGIALPLRSDKLYS-------GSRDGTVQLWDCHTGQSASVIN-----LGAEVGSLIC--E-GPWVFVGMPN 252 (479)
Q Consensus 188 ~~~H~~~V~~l~~s~~~~~l~s-------~s~Dg~v~vwd~~~~~~~~~~~-----~~~~~~~~~~--~-~~~l~~~~~~ 252 (479)
+...-....+++|++++.++++ ...++.|.+||..+++...... ....+..+.. + ++++++...+
T Consensus 13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~ 92 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL 92 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT
T ss_pred hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC
Confidence 3444556789999999988887 5778999999998887654332 1233444443 5 5666666667
Q ss_pred eEEEEEcCCCceEEe-cC-----CCccEEEEEEcCC--EEEEEeCC---------------CcEEEEEccCCCCCcccce
Q 011711 253 VVKAWHIESSAEFSL-DG-----PVGEVYSMVVANE--MLFAGAQD---------------GNILVWKGIPNTQNPFQLA 309 (479)
Q Consensus 253 ~i~v~~~~~~~~~~~-~~-----~~~~v~~~~~~~~--~l~~g~~d---------------g~i~iwd~~~~~~~~~~~~ 309 (479)
.|.+||.+ ++.... .. ....+.+++++++ ++++...+ +.|..||.. +. .
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~---~--- 164 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ---M--- 164 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC---E---
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC---E---
Confidence 89999998 665443 21 1235788999877 44444333 456666654 22 1
Q ss_pred eeecCCCCCeEEEEEc------CCEEEEE-eCCCeEEEEECC-CCc-----EEEEEeCCC-CCcEEEEEc--CCEEEEEe
Q 011711 310 ALLKGHTRPVTCLAVG------GKRLYSG-SMDNTIRVWDLD-TLE-----AVMTLNGHT-DAPMSLLCW--DQYLLSCS 373 (479)
Q Consensus 310 ~~~~~h~~~i~~l~~~------~~~l~sg-s~dg~I~iwd~~-~~~-----~~~~~~~h~-~~v~~~~~~--~~~l~s~s 373 (479)
..+..+......++++ ++.++.+ ..++.|.+||++ +++ ....+..+. ..+..+.++ ++++++..
T Consensus 165 ~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~ 244 (314)
T 1pjx_A 165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence 1112223345666665 3355554 567999999986 443 223333333 456677776 67777777
Q ss_pred CCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC
Q 011711 374 LDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (479)
Q Consensus 374 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 432 (479)
.++.|.+||..+++....+..+......+ .++++++.++++...++.|..|++..
T Consensus 245 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~i----~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 245 GSSHIEVFGPDGGQPKMRIRCPFEKPSNL----HFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTTEEEEECTTCBSCSEEEECSSSCEEEE----EECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEcCCCCcEeEEEeCCCCCceeE----EECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 88999999987665555444333333333 33688885666666678999999864
No 210
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.24 E-value=6.7e-09 Score=107.66 Aligned_cols=280 Identities=17% Similarity=0.158 Sum_probs=178.9
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEeccccc----------E-EEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEE
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKA----------V-SGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV 229 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~----------V-~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~ 229 (479)
.+.+..++.++.|..+|..++ +.+..+..+... + ..+++ ++..++.++.|+.|..+|..+|+.+..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~ 146 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDG-RLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWS 146 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTC-CEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCC-ceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeee
Confidence 556666677889999999999 677776543221 0 11122 366899999999999999999999988
Q ss_pred EecC-C-----ce--eEEEeCCCEEEEE------cCCeEEEEEcCCCceEE-ecC-C---C-------------------
Q 011711 230 INLG-A-----EV--GSLICEGPWVFVG------MPNVVKAWHIESSAEFS-LDG-P---V------------------- 271 (479)
Q Consensus 230 ~~~~-~-----~~--~~~~~~~~~l~~~------~~~~i~v~~~~~~~~~~-~~~-~---~------------------- 271 (479)
+... . .+ ..+..++.+++.. .++.|..||..+++++- ... . .
T Consensus 147 ~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 147 VDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp EECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred ecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 8764 1 11 1223345444433 25899999999998752 221 0 0
Q ss_pred --------ccEEEEEEcCC--EEEEEeCCCc-------------------EEEEEccCCCCCcccceeeecC--CC----
Q 011711 272 --------GEVYSMVVANE--MLFAGAQDGN-------------------ILVWKGIPNTQNPFQLAALLKG--HT---- 316 (479)
Q Consensus 272 --------~~v~~~~~~~~--~l~~g~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~--h~---- 316 (479)
.....++++++ +++++..++. |..+|..+++. ...++. |.
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~-----~W~~~~~~~d~wd~ 301 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY-----VWHYQTTPGDAWDY 301 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE-----EEEEESSTTCCSCC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce-----eEeeecCCcccccc
Confidence 00114566654 8888887764 99999998863 222221 21
Q ss_pred ---CCeE--EEEEcCC---EEEEEeCCCeEEEEECCCCcEEEEEeCCCCC------------------------------
Q 011711 317 ---RPVT--CLAVGGK---RLYSGSMDNTIRVWDLDTLEAVMTLNGHTDA------------------------------ 358 (479)
Q Consensus 317 ---~~i~--~l~~~~~---~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~------------------------------ 358 (479)
.+.. .+.+++. .++.++.+|.++++|.++++++.........
T Consensus 302 ~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~ 381 (689)
T 1yiq_A 302 TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLV 381 (689)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEE
T ss_pred cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEe
Confidence 1222 2334454 7889999999999999999998544321100
Q ss_pred ---------cEEEEEc--CCEEEEEeC---------------------------------------------CCeEEEEE
Q 011711 359 ---------PMSLLCW--DQYLLSCSL---------------------------------------------DNTIKVWI 382 (479)
Q Consensus 359 ---------v~~~~~~--~~~l~s~s~---------------------------------------------dg~i~iwd 382 (479)
-..++++ ..++++... +|.|+.||
T Consensus 382 ~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D 461 (689)
T 1yiq_A 382 TPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWD 461 (689)
T ss_dssp SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEE
T ss_pred CCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEE
Confidence 0012333 345554421 37899999
Q ss_pred cCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCc--eEEEEECCCc
Q 011711 383 MTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRRE--VRVIETGPDG 454 (479)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--v~~l~~s~~g 454 (479)
+.+++.+.....+...... .+. ..+. +++.++.|+.++.||.++++++.++..... ..-+.+..+|
T Consensus 462 ~~tG~~~W~~~~~~~~~~g-~~~----tagg-lvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G 529 (689)
T 1yiq_A 462 PVKQQAAWEVPYVTIFNGG-TLS----TAGN-LVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDG 529 (689)
T ss_dssp TTTTEEEEEEEESSSCCCC-EEE----ETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred CCCCCeEeEccCCCCccCc-cce----ECCC-EEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECC
Confidence 9999877666544332221 221 3455 778889999999999999999988875322 2346667788
No 211
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.24 E-value=2.8e-09 Score=110.23 Aligned_cols=265 Identities=11% Similarity=0.031 Sum_probs=174.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEecCCce------------eEEE-eCCCEEEEEcCCeEEEEEcCCCceEE-ecC
Q 011711 204 SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV------------GSLI-CEGPWVFVGMPNVVKAWHIESSAEFS-LDG 269 (479)
Q Consensus 204 ~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~------------~~~~-~~~~~l~~~~~~~i~v~~~~~~~~~~-~~~ 269 (479)
+..|+.++.++.|.-+|..+|+.+..+...... ..+. .++.+++.+.++.+..+|..+++..- ...
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 156 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNT 156 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEET
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecC
Confidence 567888888899999999999999988765321 1222 34445555678999999999988753 222
Q ss_pred C-C----ccEE-EEEEcCCEEEEEeC------CCcEEEEEccCCCCCcccceeeecCC----------------------
Q 011711 270 P-V----GEVY-SMVVANEMLFAGAQ------DGNILVWKGIPNTQNPFQLAALLKGH---------------------- 315 (479)
Q Consensus 270 ~-~----~~v~-~~~~~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~h---------------------- 315 (479)
. . ..+. ...+..+.+++++. +|.|+.+|..+++. +..+...
T Consensus 157 ~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~-----~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 157 FEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGER-----KWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp TTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE-----EEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred CcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcE-----EEEeccCCCCccccccccccccccccccc
Confidence 2 1 1111 22334566777664 68999999988763 1111111
Q ss_pred ----------CCCeEEEEEc--CCEEEEEeCCC-------------------eEEEEECCCCcEEEEEeCCCC-------
Q 011711 316 ----------TRPVTCLAVG--GKRLYSGSMDN-------------------TIRVWDLDTLEAVMTLNGHTD------- 357 (479)
Q Consensus 316 ----------~~~i~~l~~~--~~~l~sgs~dg-------------------~I~iwd~~~~~~~~~~~~h~~------- 357 (479)
......++++ ++.++.++.++ .|..+|.++++.+..++....
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 0111235554 77888887664 599999999999988864211
Q ss_pred --Cc--EEEEEcC---CEEEEEeCCCeEEEEEcCCCcceEEeccccCc-------cceEEE-------------------
Q 011711 358 --AP--MSLLCWD---QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNED-------HGVLAL------------------- 404 (479)
Q Consensus 358 --~v--~~~~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~------------------- 404 (479)
.. .....+| +.++.++.+|.++++|..+++.+......... ......
T Consensus 312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G 391 (677)
T 1kb0_A 312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYG 391 (677)
T ss_dssp CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTC
T ss_pred CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccc
Confidence 11 2222345 68899999999999999999876554322100 000000
Q ss_pred -----eeeeCCCCCcEEEEEeC-------------------------------------------CCeEEEeecCCCcee
Q 011711 405 -----GGLNDPDGNPVLICSCN-------------------------------------------DDSVHLYELPSFMER 436 (479)
Q Consensus 405 -----~~~~~~~~~~~l~s~~~-------------------------------------------dg~v~iwd~~~~~~~ 436 (479)
...++|++. ++++... .+.|..||+.+++.+
T Consensus 392 ~~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~ 470 (677)
T 1kb0_A 392 AHNWHPMSFNPQTG-LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA 470 (677)
T ss_dssp SSCSSCCEEETTTT-EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE
T ss_pred ccCCCCceEcCCCC-EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE
Confidence 123357776 4444322 278999999999999
Q ss_pred eeeeccCceEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 437 GRIFSRREVRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 437 ~~~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
.+..+..++....+..++ +++.++.||.+++||..+++
T Consensus 471 W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 471 WSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp EEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred eecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence 988876666665566566 88889999999999998765
No 212
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.23 E-value=7e-10 Score=116.62 Aligned_cols=231 Identities=13% Similarity=-0.008 Sum_probs=128.4
Q ss_pred CeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEc
Q 011711 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGM 250 (479)
Q Consensus 171 ~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (479)
..|++||+.++ +.+.. ..+...+..++|+|| +.|+.++.|+... .+. .. -...
T Consensus 189 ~~i~v~dl~tg-~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~-----~~~-~~------------------~~~~ 241 (741)
T 1yr2_A 189 RTVKFVGVADG-KPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKE-----GQA-FQ------------------ALNY 241 (741)
T ss_dssp EEEEEEETTTC-CEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------------------------------CCC
T ss_pred EEEEEEECCCC-CCCCc-cCCCceeccEEEECC-CEEEEEEecCccc-----ccc-cc------------------cCCC
Confidence 57899999887 43332 222233468899999 9999888776410 000 00 0001
Q ss_pred CCeEEEEEcCCCc---eEEec--CCCccEEEEEEcCC--EEEEEeCC-----CcEEEEEccCCCCCcccceeeecCCCCC
Q 011711 251 PNVVKAWHIESSA---EFSLD--GPVGEVYSMVVANE--MLFAGAQD-----GNILVWKGIPNTQNPFQLAALLKGHTRP 318 (479)
Q Consensus 251 ~~~i~v~~~~~~~---~~~~~--~~~~~v~~~~~~~~--~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~h~~~ 318 (479)
...|.+|++.++. ..... .+...+..+.++++ .|+..+.+ ..|++||+.++.. +....+..+...
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~---~~~~~l~~~~~~ 318 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI---GPVTALIPDLKA 318 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE---CCCEEEECSSSS
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC---cccEEecCCCCc
Confidence 1233344443332 11111 22335788889888 56665543 3899999876521 102233334443
Q ss_pred eEEE-EEcCCEEEEEeC----CCeEEEEECCCCc-EEEEE-eCCCCCcEEEEEc-CCEEEEEeCCCeEEEEEcC-CCcce
Q 011711 319 VTCL-AVGGKRLYSGSM----DNTIRVWDLDTLE-AVMTL-NGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMT-EEGNL 389 (479)
Q Consensus 319 i~~l-~~~~~~l~sgs~----dg~I~iwd~~~~~-~~~~~-~~h~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~-~~~~~ 389 (479)
+... ..+++.|+..+. ++.|.+||+.++. ....+ ..+...+..+.+. +.++++...|+..++|.+. +++..
T Consensus 319 ~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~ 398 (741)
T 1yr2_A 319 QWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPA 398 (741)
T ss_dssp CEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEE
T ss_pred eEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCce
Confidence 4333 335888877765 3459999998852 33344 4444445566666 4567788889988887654 23333
Q ss_pred EEeccccCccceEEEeeeeCCCCCcEEEEEe---CCCeEEEeecCCCc
Q 011711 390 EVAYTHNEDHGVLALGGLNDPDGNPVLICSC---NDDSVHLYELPSFM 434 (479)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~---~dg~v~iwd~~~~~ 434 (479)
..+.... . .......++|+++.++++.+ ..++|++||+.+++
T Consensus 399 ~~l~~~~-~--~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 399 GAVSLPG-I--GSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EECBCSS-S--CEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred eeccCCC-C--eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 3333211 1 11223334678775655543 24789999998876
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.23 E-value=3.9e-08 Score=95.42 Aligned_cols=235 Identities=14% Similarity=0.081 Sum_probs=147.0
Q ss_pred ccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCc
Q 011711 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVG 272 (479)
Q Consensus 193 ~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~ 272 (479)
.....|+|+++++++++...++.|++||..+++....... ..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~--------------------------------------~~ 172 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG--------------------------------------FK 172 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET--------------------------------------CC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc--------------------------------------CC
Confidence 3567888888888777766677888888776655433221 11
Q ss_pred cEEEEEEcCC--EEEEEeCCC--cEEEEEccCCCCCcccceeeecC-CCCCeEEEEEc--CCEEEEEeCCCeEEEEECCC
Q 011711 273 EVYSMVVANE--MLFAGAQDG--NILVWKGIPNTQNPFQLAALLKG-HTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDT 345 (479)
Q Consensus 273 ~v~~~~~~~~--~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~-h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~ 345 (479)
... ++++++ .|+++..++ .|.+++...+.. ......+.. ....+.+++++ +..|+.+..++.|+.||..+
T Consensus 173 ~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~--~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~ 249 (409)
T 3hrp_A 173 GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA--PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT 249 (409)
T ss_dssp BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC--EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTT
T ss_pred CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce--eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCC
Confidence 112 666665 677777765 788888765432 011111112 44566778886 56677778889999999988
Q ss_pred CcEEEE----EeCCCCCc-E-EEEEc--CC-EEEEEeCCCeEEEEEcCCCcceEEeccccC--c---------cceEEEe
Q 011711 346 LEAVMT----LNGHTDAP-M-SLLCW--DQ-YLLSCSLDNTIKVWIMTEEGNLEVAYTHNE--D---------HGVLALG 405 (479)
Q Consensus 346 ~~~~~~----~~~h~~~v-~-~~~~~--~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~---------~~~~~~~ 405 (479)
+..... ..++.... . .++++ +. ++++-..++.|+.|+.... ...+..... . .......
T Consensus 250 ~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~g 327 (409)
T 3hrp_A 250 QEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNG 327 (409)
T ss_dssp CCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEE
T ss_pred CCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeE
Confidence 764332 22222222 2 77776 34 4555566789999987643 333322210 0 0011223
Q ss_pred eeeCCCCCcEEEEEe-CCCeEEEeecCCCceeeeeec---------------cCceEEEEECCCc-eEEEEcCCCcEEEE
Q 011711 406 GLNDPDGNPVLICSC-NDDSVHLYELPSFMERGRIFS---------------RREVRVIETGPDG-LFFTGDGTGMLSVW 468 (479)
Q Consensus 406 ~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~---------------~~~v~~l~~s~~g-~l~sg~~dg~v~vw 468 (479)
+.++++|+ ++++-. .++.|+.|++.++.......+ -.....++++++| ++++-..++.|+.+
T Consensus 328 ia~d~dG~-lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 328 MTVDEDGN-FYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp EEECTTCC-EEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred EEEeCCCC-EEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence 34469998 777777 889999999877764332222 2458999999999 88888888999888
Q ss_pred Eec
Q 011711 469 KIL 471 (479)
Q Consensus 469 ~~~ 471 (479)
+++
T Consensus 407 ~~e 409 (409)
T 3hrp_A 407 AVE 409 (409)
T ss_dssp EEC
T ss_pred EeC
Confidence 763
No 214
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.22 E-value=4.6e-09 Score=108.88 Aligned_cols=265 Identities=12% Similarity=0.050 Sum_probs=171.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEecCCce------------eE-EEeCCCEEEEEcCCeEEEEEcCCCceEE-ecC
Q 011711 204 SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV------------GS-LICEGPWVFVGMPNVVKAWHIESSAEFS-LDG 269 (479)
Q Consensus 204 ~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~------------~~-~~~~~~~l~~~~~~~i~v~~~~~~~~~~-~~~ 269 (479)
+..++.++.++.|.-+|..+|+.+..+...... .. ...++.+++.+.++.+..+|.++++++- ...
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence 667888888999999999999999988754321 11 2235555555679999999999998753 221
Q ss_pred C--C---ccEE-EEEEcCCEEEEEe------CCCcEEEEEccCCCCCcccceeeecC-----------------------
Q 011711 270 P--V---GEVY-SMVVANEMLFAGA------QDGNILVWKGIPNTQNPFQLAALLKG----------------------- 314 (479)
Q Consensus 270 ~--~---~~v~-~~~~~~~~l~~g~------~dg~i~iwd~~~~~~~~~~~~~~~~~----------------------- 314 (479)
. . ..+. +..+..+.++++. .+|.|+.||..+++.. ..+..
T Consensus 150 ~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~-----W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 150 RADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEA-----WRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp CSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE-----EEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred cCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEE-----EEecccCCCcccccccccccccccccCC
Confidence 1 1 1111 1123355666664 3689999999887641 11110
Q ss_pred --------CCCCeEEEEEc--CCEEEEEeCCCe-------------------EEEEECCCCcEEEEEeC--CC-------
Q 011711 315 --------HTRPVTCLAVG--GKRLYSGSMDNT-------------------IRVWDLDTLEAVMTLNG--HT------- 356 (479)
Q Consensus 315 --------h~~~i~~l~~~--~~~l~sgs~dg~-------------------I~iwd~~~~~~~~~~~~--h~------- 356 (479)
+......++++ .+.++.++.++. |..+|.++++.+..++. |.
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~ 304 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT 304 (689)
T ss_dssp STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence 00111245564 688888888764 99999999999998874 22
Q ss_pred CCc--EEEEEcCC---EEEEEeCCCeEEEEEcCCCcceEEecccc-------------------------CccceEEE--
Q 011711 357 DAP--MSLLCWDQ---YLLSCSLDNTIKVWIMTEEGNLEVAYTHN-------------------------EDHGVLAL-- 404 (479)
Q Consensus 357 ~~v--~~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-------------------------~~~~~~~~-- 404 (479)
... ..+...++ .++.++.+|.++++|.++++.+....... .....+.+
T Consensus 305 ~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~ 384 (689)
T 1yiq_A 305 QHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPA 384 (689)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSC
T ss_pred CCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCC
Confidence 111 12223443 78899999999999999988763322111 00000000
Q ss_pred --------eeeeCCCCCcEEEEEeC---------------------------------------------CCeEEEeecC
Q 011711 405 --------GGLNDPDGNPVLICSCN---------------------------------------------DDSVHLYELP 431 (479)
Q Consensus 405 --------~~~~~~~~~~~l~s~~~---------------------------------------------dg~v~iwd~~ 431 (479)
...++|+.. ++++... +|.|..||+.
T Consensus 385 ~~Gg~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~ 463 (689)
T 1yiq_A 385 FWGAHDWQPMSYNPDTG-LVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPV 463 (689)
T ss_dssp TTCSSCSSCCEEETTTT-EEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETT
T ss_pred cccccCCCcceECCCCC-EEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECC
Confidence 023356666 4444321 3789999999
Q ss_pred CCceeeeeeccCceEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 432 SFMERGRIFSRREVRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 432 ~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
+++.+.+.....+...-.+...+ +++.|+.||.|+.||..+++
T Consensus 464 tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 464 KQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp TTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence 99999988776555544444445 89999999999999998865
No 215
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.22 E-value=9.8e-09 Score=95.63 Aligned_cols=229 Identities=9% Similarity=0.048 Sum_probs=147.4
Q ss_pred CeEEEeccCCeeEe-------CCCCCeEEEeecCCCceeeEEEe-----cccccEEEEEeCCC-CCEEEEEeCCCcEEEE
Q 011711 153 KNVCYHWLSGNCVK-------GDECRFWHSWFCGEGFTMLAKLE-----GHKKAVSGIALPLR-SDKLYSGSRDGTVQLW 219 (479)
Q Consensus 153 ~~~c~~~~~~~~~~-------g~~d~~i~vw~~~~~~~~~~~~~-----~H~~~V~~l~~s~~-~~~l~s~s~Dg~v~vw 219 (479)
..+++...+...++ +..++.|.+|+..++ +.. .+. ++...+.+++++++ ++++++.. ++.|.+|
T Consensus 21 ~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g-~~~-~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~ 97 (314)
T 1pjx_A 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG-KKT-VICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVV 97 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC-CEE-EEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEE
T ss_pred cCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC-cEE-EEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEE
Confidence 34555544445555 567889999998776 322 232 26678999999999 66555444 4479999
Q ss_pred ECCCCceEEE-EecC-----CceeEEE--eCCCEEEEEcC----------------CeEEEEEcCCCceEEecCCCccEE
Q 011711 220 DCHTGQSASV-INLG-----AEVGSLI--CEGPWVFVGMP----------------NVVKAWHIESSAEFSLDGPVGEVY 275 (479)
Q Consensus 220 d~~~~~~~~~-~~~~-----~~~~~~~--~~~~~l~~~~~----------------~~i~v~~~~~~~~~~~~~~~~~v~ 275 (479)
|.+ ++.... .... ..+..+. .++++.++... +.|..++.. ++......+.....
T Consensus 98 d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~ 175 (314)
T 1pjx_A 98 QTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPN 175 (314)
T ss_dssp ETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEE
T ss_pred eCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcc
Confidence 998 765433 2211 1233444 36777766643 466677765 44433333344567
Q ss_pred EEEEc----CC--EEEEE-eCCCcEEEEEcc-CCCCCcccceeeecCCC-CCeEEEEEc--CCEEEEEeCCCeEEEEECC
Q 011711 276 SMVVA----NE--MLFAG-AQDGNILVWKGI-PNTQNPFQLAALLKGHT-RPVTCLAVG--GKRLYSGSMDNTIRVWDLD 344 (479)
Q Consensus 276 ~~~~~----~~--~l~~g-~~dg~i~iwd~~-~~~~~~~~~~~~~~~h~-~~i~~l~~~--~~~l~sgs~dg~I~iwd~~ 344 (479)
.++++ ++ .++++ ..++.|.+||.. .+.....+....+..+. ..+..++++ ++++++...++.|.+||.+
T Consensus 176 ~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence 88888 77 45554 567899999976 22211111223334443 557788886 7777777788999999999
Q ss_pred CCcEEEEEeCCCCCcEEEEEc--CCEEE-EEeCCCeEEEEEcCCC
Q 011711 345 TLEAVMTLNGHTDAPMSLLCW--DQYLL-SCSLDNTIKVWIMTEE 386 (479)
Q Consensus 345 ~~~~~~~~~~h~~~v~~~~~~--~~~l~-s~s~dg~i~iwd~~~~ 386 (479)
+++.+..+..+...+.++.++ ++.|+ +...++.|..|++...
T Consensus 256 ~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 256 GGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp CBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 888777777777778888886 56454 4555689999998754
No 216
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.20 E-value=1e-09 Score=104.51 Aligned_cols=172 Identities=10% Similarity=0.054 Sum_probs=127.0
Q ss_pred ccEEEEEEcCC--EEEEEeCCCcEEEEEccCCC------CCcccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEEC
Q 011711 272 GEVYSMVVANE--MLFAGAQDGNILVWKGIPNT------QNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDL 343 (479)
Q Consensus 272 ~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~------~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~ 343 (479)
..++.+++++. ++++|+.+ .+.+|++.... ...++.... ..+.. |+.++|++++|+++ .++.|++||+
T Consensus 38 ~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCFHGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEEETTEEEEE-ESSEEEEEES
T ss_pred ccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEECCCEEEEE-cCCcEEEEEc
Confidence 36788888877 88888887 45569875432 000222222 23556 99999998999998 8899999999
Q ss_pred CCCcEEEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCC
Q 011711 344 DTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD 423 (479)
Q Consensus 344 ~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 423 (479)
++.........|...+.++.+....++++..||.|.+||+.+..... ....+ .++.|+|+| ++.|..||
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~~~~V----s~v~WSpkG---~~vg~~dg 182 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----LAQNV----TSFDVTNSQ---LAVLLKDR 182 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE----EEESE----EEEEECSSE---EEEEETTS
T ss_pred hhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc----ccCCc----eEEEEcCCc---eEEEEcCC
Confidence 98887777778888888888876669999999999999998766432 22233 345567998 46688999
Q ss_pred eEEEeecCCCce--eeee------e----ccCceEEEEECCCc-eEEE
Q 011711 424 SVHLYELPSFME--RGRI------F----SRREVRVIETGPDG-LFFT 458 (479)
Q Consensus 424 ~v~iwd~~~~~~--~~~~------~----~~~~v~~l~~s~~g-~l~s 458 (479)
.+++|+.+..+. ...+ . +...|.++.|.+++ ++++
T Consensus 183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 183 SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 999999887774 4444 1 46779999999999 5554
No 217
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.19 E-value=1.2e-13 Score=132.70 Aligned_cols=259 Identities=11% Similarity=0.031 Sum_probs=138.7
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEE
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI 240 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 240 (479)
.+.++.++.|+.|+.||..++ +.+..++. +.+.+..+..++..+++++.|+.|+.||.++|+.+.........
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG-~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~---- 81 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTG-SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE---- 81 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTC-CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHH----
T ss_pred CCEEEEEcCCCEEEEEECCCC-CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc----
Confidence 456777778888888888888 66666665 45555555566777777788888888888877765443321000
Q ss_pred eCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeE
Q 011711 241 CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT 320 (479)
Q Consensus 241 ~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~ 320 (479)
. . ....+. ..++.+++|+.|+.|+.||..+++. ...+..+.. +
T Consensus 82 -----------------------~---~-~~sp~~---~~~~~v~~g~~dg~v~a~D~~tG~~-----~w~~~~~~~-~- 124 (369)
T 2hz6_A 82 -----------------------L---V-QASPCR---SSDGILYMGKKQDIWYVIDLLTGEK-----QQTLSSAFA-D- 124 (369)
T ss_dssp -----------------------H---H-TTCSCC--------CCCCEEEEEEEEECCC---------------------
T ss_pred -----------------------c---c-ccCceE---ecCCEEEEEeCCCEEEEEECCCCcE-----EEEecCCCc-c-
Confidence 0 0 000100 1234677788888999999887753 222222221 1
Q ss_pred EEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcC-----CEEEEEeCCCeEEEEEcCCCcceEEeccc
Q 011711 321 CLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD-----QYLLSCSLDNTIKVWIMTEEGNLEVAYTH 395 (479)
Q Consensus 321 ~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~-----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 395 (479)
..+..++.+++++.|+.|+.||.++++.+.++..+.. ......+ ..+++++.||.|+.||..+++.+......
T Consensus 125 ~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~--~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 202 (369)
T 2hz6_A 125 SLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY--AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA 202 (369)
T ss_dssp --------EEEEEEEEEEECCCSSSSSCCCEEEEEEE--CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS
T ss_pred cccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc--cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC
Confidence 1122578888999999999999999988766542211 1111222 56788899999999999988766554422
Q ss_pred cCccceEEEeeeeCCCCCcE---EEEEeCCCeEEEeecCCCc----eeeeeeccCceEEEEECCCceEEEEcCCCcEEEE
Q 011711 396 NEDHGVLALGGLNDPDGNPV---LICSCNDDSVHLYELPSFM----ERGRIFSRREVRVIETGPDGLFFTGDGTGMLSVW 468 (479)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~---l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~v~~l~~s~~g~l~sg~~dg~v~vw 468 (479)
.++ .. ....+++|..+ .+.+ ++.++.+|..+++ .+.+......+.... ..++.|+.++.||.|+.+
T Consensus 203 -~pv--~~-~~~~~~dg~~~v~~~~~~--~~~l~~ld~~tG~~~~~~~W~~~~~~~~~sp~-~~~g~lyv~~~~G~l~al 275 (369)
T 2hz6_A 203 -SPV--VA-FYVWQREGLRKVMHINVA--VETLRYLTFMSGEVGRITKWKYPFPKETEAKS-KLTPTLYVGKYSTSLYAS 275 (369)
T ss_dssp -SCE--EE-EEECTTSSCEEECCEEEE--HHHHHHHHHHHHHHHHHHTSCCCCCCHHHHHH-HSEEEECBEECSSCEECC
T ss_pred -Cce--EE-EEEecCCceEeccceeec--ccceeeeehhcCCcccceeeeeccCccccccc-cccceEEEecccCCEEec
Confidence 211 11 22234555311 1122 4456777777776 555444333322111 124588889999999999
Q ss_pred Eecc
Q 011711 469 KILA 472 (479)
Q Consensus 469 ~~~~ 472 (479)
+...
T Consensus 276 ~~~~ 279 (369)
T 2hz6_A 276 PSMV 279 (369)
T ss_dssp EEEE
T ss_pred Cccc
Confidence 8874
No 218
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.18 E-value=5.6e-09 Score=99.37 Aligned_cols=167 Identities=13% Similarity=0.113 Sum_probs=130.3
Q ss_pred cEEEEEeCCCCCEEEEEeCCCcEEEEECCCCc-----------eEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCC
Q 011711 194 AVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ-----------SASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESS 262 (479)
Q Consensus 194 ~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~ 262 (479)
.+..+++++...++++|+.|+ +++|++++.+ ......... +..+.+++.+|+++.++.|++||+.+.
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~~~~~l~v~dv~sl 116 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVSTRNALYSLDLEEL 116 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEEESSEEEEEESSST
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEEcCCcEEEEEchhh
Confidence 689999999999999999985 6669865433 224455666 888778999999999999999998776
Q ss_pred ceE-EecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEE
Q 011711 263 AEF-SLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVW 341 (479)
Q Consensus 263 ~~~-~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iw 341 (479)
... ....+...+.++.+.+..+++++.||.|.+||+..+.. .. +...|+|++|+.+-++.|..||++++|
T Consensus 117 ~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~-----~~----~~~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 117 SEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKST-----KQ----LAQNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp TCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE-----EE----EEESEEEEEECSSEEEEEETTSCEEEE
T ss_pred hccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcc-----cc----ccCCceEEEEcCCceEEEEcCCcEEEE
Confidence 543 34456677888888776799999999999999987642 11 456899999995558899999999999
Q ss_pred ECCCCcE--EEEE------e---CCCCCcEEEEEc--CCEEEE
Q 011711 342 DLDTLEA--VMTL------N---GHTDAPMSLLCW--DQYLLS 371 (479)
Q Consensus 342 d~~~~~~--~~~~------~---~h~~~v~~~~~~--~~~l~s 371 (479)
+...++. ..++ . +|...|.++.|. +.++++
T Consensus 188 ~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 188 AWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 9988776 6667 2 367789999998 345554
No 219
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.12 E-value=8.4e-10 Score=103.75 Aligned_cols=253 Identities=15% Similarity=0.128 Sum_probs=159.2
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCce-eEEEe-CCCEEEEEcCCeEEEEEcCCCceEEecCCCccEE
Q 011711 198 IALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV-GSLIC-EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVY 275 (479)
Q Consensus 198 l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~ 275 (479)
.....++ .|+.++.++.|..|| .+++........... ..+.. .+..+.++..+ +..+|.................
T Consensus 25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~-l~~~d~~g~~~~~~~~~~~~~~ 101 (330)
T 3hxj_A 25 PILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK-VYAINPDGTEKWRFDTKKAIVS 101 (330)
T ss_dssp CEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE-EEEECCCGGGGGGSCC-----C
T ss_pred ceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc-EEEECCCCcEEEEEECCCCccc
Confidence 3444445 477777888999999 888877665544333 23333 24456666555 8888863322222222222222
Q ss_pred EEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc-CCEEEEEeCCCeEEEEECCCCcEEEEEeC
Q 011711 276 SMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNG 354 (479)
Q Consensus 276 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 354 (479)
...+..+.+.+++.++.|..+|.. +.. ......+...+.++..+ +..++.++.++.|..+|.. ++.+..+..
T Consensus 102 ~~~~~~~~l~v~t~~~~l~~~d~~-g~~-----~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~ 174 (330)
T 3hxj_A 102 DFTIFEDILYVTSMDGHLYAINTD-GTE-----KWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKT 174 (330)
T ss_dssp CEEEETTEEEEECTTSEEEEECTT-SCE-----EEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEEC
T ss_pred CceEECCEEEEEecCCEEEEEcCC-CCE-----EEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEec
Confidence 333446688999999999999977 432 22333344455566666 6668888889999999999 888888776
Q ss_pred CCCCcEEEEEc-CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCC
Q 011711 355 HTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSF 433 (479)
Q Consensus 355 h~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 433 (479)
....+.++..+ +..++.++ +.|..+| .+++...........+..+.. +++|. +..++.++.|..+|. ++
T Consensus 175 ~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~----~~~g~--l~v~t~~~gl~~~~~-~g 244 (330)
T 3hxj_A 175 NDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAI----SEDGT--IYVTSLDGHLYAINP-DG 244 (330)
T ss_dssp SSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEE----CTTSC--EEEEETTTEEEEECT-TS
T ss_pred CCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEE----CCCCe--EEEEcCCCeEEEECC-CC
Confidence 66666777775 44566666 7899999 555555444433333333333 46766 455667888888874 55
Q ss_pred ceeeeeec-cCceEEEEECCCceEEEEcCCCcEEEEEe
Q 011711 434 MERGRIFS-RREVRVIETGPDGLFFTGDGTGMLSVWKI 470 (479)
Q Consensus 434 ~~~~~~~~-~~~v~~l~~s~~g~l~sg~~dg~v~vw~~ 470 (479)
+....+.. ...+..+.+.+++.|..++.+|.|..+|.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 245 TEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP 282 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT
T ss_pred CEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC
Confidence 55555543 23345566777777888888888888874
No 220
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.09 E-value=4.7e-08 Score=94.31 Aligned_cols=261 Identities=12% Similarity=0.038 Sum_probs=171.8
Q ss_pred CCCCEEEEEeCC-----CcEEEEECCCCceEEEEecCCce-eEEEeCCCEEEEEc-----------CCeEEEEEcCCCce
Q 011711 202 LRSDKLYSGSRD-----GTVQLWDCHTGQSASVINLGAEV-GSLICEGPWVFVGM-----------PNVVKAWHIESSAE 264 (479)
Q Consensus 202 ~~~~~l~s~s~D-----g~v~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~-----------~~~i~v~~~~~~~~ 264 (479)
++++.++..... +.|.+.|..+++.+..+..+... ..+.++++.++++. ++.|.++|..+.+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v 161 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP 161 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCCceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE
Confidence 566666666542 69999999999999999866544 33445888777653 56899999999887
Q ss_pred EEec--C-C-----CccEEEEEEcCC--EEEEEeC--CCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc-CCEEEE
Q 011711 265 FSLD--G-P-----VGEVYSMVVANE--MLFAGAQ--DGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYS 331 (479)
Q Consensus 265 ~~~~--~-~-----~~~v~~~~~~~~--~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~l~s 331 (479)
.... + . ...-..+.++++ +++++.. ++.|.+.|+.+.+. +..+..-. ...+... ...+++
T Consensus 162 v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv-----v~~I~v~g--~~~~~p~g~~~~v~ 234 (426)
T 3c75_H 162 IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF-----DRMLDVPD--CYHIFPASPTVFYM 234 (426)
T ss_dssp EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE-----EEEEECCS--EEEEEEEETTEEEE
T ss_pred EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE-----EEEEEcCC--ceeeccCCCcEEEE
Confidence 5321 1 1 122346778877 7777663 68899999988643 33333211 1222233 567778
Q ss_pred EeCCCeEEEEECCCCcEEEEE----eCCCCCc---EEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEecc----------
Q 011711 332 GSMDNTIRVWDLDTLEAVMTL----NGHTDAP---MSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYT---------- 394 (479)
Q Consensus 332 gs~dg~I~iwd~~~~~~~~~~----~~h~~~v---~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------- 394 (479)
.+.||++.+.++.+++..... .....++ ..+...+..++..+..+.+.+.|....... ....
T Consensus 235 ~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~-v~~~~~~~~~~~i~ 313 (426)
T 3c75_H 235 NCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGAT-FRAPIEALTEAERA 313 (426)
T ss_dssp EETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEE-ECCCEESSCTTTGG
T ss_pred EcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceE-Eeeeeeeccccccc
Confidence 889999999999777665332 1111111 122233566666677899999998654321 1110
Q ss_pred ---ccCccceEEEeeeeCCCCCcEEEEEe---------CCCeEEEeecCCCceeeeeeccCceEEEEECCCc--eEEEEc
Q 011711 395 ---HNEDHGVLALGGLNDPDGNPVLICSC---------NDDSVHLYELPSFMERGRIFSRREVRVIETGPDG--LFFTGD 460 (479)
Q Consensus 395 ---~~~~~~~~~~~~~~~~~~~~~l~s~~---------~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sg~ 460 (479)
.......+.+ +|+++.++++.. .++.|.++|..+.+.+.++........+.|+||| ++++..
T Consensus 314 ~g~~p~g~~~va~----s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n 389 (426)
T 3c75_H 314 DDWRPGGWQQTAY----HRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALS 389 (426)
T ss_dssp GTEEECSSSCEEE----EGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEE
T ss_pred cccccCCceeeEE----cCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEc
Confidence 0011112333 588886666543 1357999999999999999877789999999998 566665
Q ss_pred -CCCcEEEEEeccCC
Q 011711 461 -GTGMLSVWKILAKP 474 (479)
Q Consensus 461 -~dg~v~vw~~~~~~ 474 (479)
.++.|.++|..+.+
T Consensus 390 ~~s~~VsVID~~t~k 404 (426)
T 3c75_H 390 AGTQTLHIYDAATGE 404 (426)
T ss_dssp TTTTEEEEEETTTCC
T ss_pred CCCCeEEEEECCCCC
Confidence 59999999987754
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.08 E-value=4.9e-08 Score=101.63 Aligned_cols=237 Identities=13% Similarity=0.055 Sum_probs=146.3
Q ss_pred cccccEEEEEeCCCCCEEEEE-----eCCCcEEEEECCCCceEEEEecC--CceeEEEeCCCEEEEE-cC----------
Q 011711 190 GHKKAVSGIALPLRSDKLYSG-----SRDGTVQLWDCHTGQSASVINLG--AEVGSLICEGPWVFVG-MP---------- 251 (479)
Q Consensus 190 ~H~~~V~~l~~s~~~~~l~s~-----s~Dg~v~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~-~~---------- 251 (479)
+|...+..++|||||++||-+ +.+.+|++||+.+++.+...... ....... +++.|+.+ .+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 466688999999999988843 33357999999999866542211 2334556 88766554 44
Q ss_pred ---CeEEEEEcCCCce---EEecC---CCccEEEEEEcCC--EE-EEEeC---CCcEEEEEccCCCCCcccceeeecCCC
Q 011711 252 ---NVVKAWHIESSAE---FSLDG---PVGEVYSMVVANE--ML-FAGAQ---DGNILVWKGIPNTQNPFQLAALLKGHT 316 (479)
Q Consensus 252 ---~~i~v~~~~~~~~---~~~~~---~~~~v~~~~~~~~--~l-~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~h~ 316 (479)
..|.+|++.+... ..... +...+..+.++++ .| ++... ++.|+++|+.++... ...+..+.
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~----~~~l~~~~ 280 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP----LLTVQGDL 280 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC----CEEEECSS
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc----eEEEeCCC
Confidence 2499999987652 22222 3345778889988 44 44332 358999998775321 23344555
Q ss_pred CCeEEE-EEcCCEEEE-EeCC---CeEEEEECCCCcE--EEEEeCCCCCcEEEEEcCCEEEEEeC-CC--eEEEEEcCCC
Q 011711 317 RPVTCL-AVGGKRLYS-GSMD---NTIRVWDLDTLEA--VMTLNGHTDAPMSLLCWDQYLLSCSL-DN--TIKVWIMTEE 386 (479)
Q Consensus 317 ~~i~~l-~~~~~~l~s-gs~d---g~I~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~l~s~s~-dg--~i~iwd~~~~ 386 (479)
...... ..+++.|+. ...+ +.|..+|+.+++. ...+..|...+..+...++.|+.... ++ .|++||+...
T Consensus 281 ~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 281 DADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred CceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 555443 334555544 4333 6899999988754 34566666665566666887776655 44 6888988744
Q ss_pred cceEEeccccCccceEEEeeeeCCCCCcEEEEEeCC---CeEEEeecCCCce
Q 011711 387 GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND---DSVHLYELPSFME 435 (479)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~ 435 (479)
. ...+... .. .......++++++.++++.+.. +.|..||+.+++.
T Consensus 361 ~-~~~l~~p-~~--~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 361 R-VREVALP-GL--GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp E-EEEECCS-SS--SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred e-eEEeecC-CC--ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 3 3333221 11 1122333467777666655432 7899999987653
No 222
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.07 E-value=4.7e-07 Score=83.35 Aligned_cols=231 Identities=12% Similarity=0.079 Sum_probs=148.2
Q ss_pred ccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCC
Q 011711 191 HKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGP 270 (479)
Q Consensus 191 H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~ 270 (479)
....+.++++.++++..++...++.|.+||.. ++... +. ....
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~-----------------------------------~~~~ 60 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FE-----------------------------------VPTP 60 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EE-----------------------------------CSST
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EE-----------------------------------CCCC
Confidence 45678899999999988887778999999987 54332 21 1112
Q ss_pred CccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCC
Q 011711 271 VGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTL 346 (479)
Q Consensus 271 ~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~ 346 (479)
...+.+++++++ ++++...++.|..+|.. +.. . ..........+.+++++ ++++++...++.|..+|.. +
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~---~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 134 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF---T-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-G 134 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE---E-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-S
T ss_pred CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe---E-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-C
Confidence 345778888765 44444447889999876 321 1 12222234678889986 6666666668899999988 6
Q ss_pred cEEE-EEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCC
Q 011711 347 EAVM-TLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD 423 (479)
Q Consensus 347 ~~~~-~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 423 (479)
+... .+......+..+.++ +++.++...++.|..+|. ++... .+....... ....+..+++|. +.++....+
T Consensus 135 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~--~~~~i~~d~~g~-l~v~~~~~~ 209 (300)
T 2qc5_A 135 TIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLE-EYPLPTNAA--APVGITSGNDGA-LWFVEIMGN 209 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTC--CEEEEEECTTSS-EEEEETTTT
T ss_pred CEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEE-EeeCCCCCC--CcceEEECCCCC-EEEEccCCC
Confidence 5542 223334567778776 565666656789999998 44332 222111111 122333468887 666666677
Q ss_pred eEEEeecCCCceeee-ee-ccCceEEEEECCCc-eEEEEcCCCcEEEEEe
Q 011711 424 SVHLYELPSFMERGR-IF-SRREVRVIETGPDG-LFFTGDGTGMLSVWKI 470 (479)
Q Consensus 424 ~v~iwd~~~~~~~~~-~~-~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~ 470 (479)
.|.+||. +++.... .. ....+.+++++++| ++++...++.|..|+.
T Consensus 210 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 210 KIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred EEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 8999998 4443322 11 24568999999999 6666666788888876
No 223
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.05 E-value=1.2e-07 Score=87.65 Aligned_cols=207 Identities=8% Similarity=-0.032 Sum_probs=134.0
Q ss_pred eEEEeccCC-eeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 011711 154 NVCYHWLSG-NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (479)
Q Consensus 154 ~~c~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~ 232 (479)
...+.+..+ .++++...+.|+.||..++.. ..+ .+...+.+++++++++++++ . ++.|.+||.++++.......
T Consensus 17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~ 91 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATV 91 (297)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEEC
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCcE--EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEec
Confidence 334444333 556667789999999987732 223 24578999999999995554 4 56799999998876544432
Q ss_pred C-----CceeEEE--eCCCEEEEEc----------CCeEEEEEcCC-CceEEecCCCccEEEEEEcCC--EE-EEEeCCC
Q 011711 233 G-----AEVGSLI--CEGPWVFVGM----------PNVVKAWHIES-SAEFSLDGPVGEVYSMVVANE--ML-FAGAQDG 291 (479)
Q Consensus 233 ~-----~~~~~~~--~~~~~l~~~~----------~~~i~v~~~~~-~~~~~~~~~~~~v~~~~~~~~--~l-~~g~~dg 291 (479)
. .....+. ++|++.++.. .....+|.+.. +............+.++++++ .+ ++.+.++
T Consensus 92 ~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~ 171 (297)
T 3g4e_A 92 DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSY 171 (297)
T ss_dssp CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGT
T ss_pred CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCC
Confidence 2 1123333 4777766542 13345555543 233333333445678999877 44 5556688
Q ss_pred cEEEEEcc--CCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc
Q 011711 292 NILVWKGI--PNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW 365 (479)
Q Consensus 292 ~i~iwd~~--~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~ 365 (479)
.|.+|++. ++.....+....+..+......++++ |++.++...++.|..||..+++.+..+..+...+.++++.
T Consensus 172 ~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 172 SVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFG 249 (297)
T ss_dssp EEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEE
T ss_pred cEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEe
Confidence 99999974 33211112222333344567788886 7667777778899999999999999998887778888886
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.01 E-value=4.9e-10 Score=107.38 Aligned_cols=196 Identities=18% Similarity=0.068 Sum_probs=109.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEE-EEcC
Q 011711 203 RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSM-VVAN 281 (479)
Q Consensus 203 ~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~-~~~~ 281 (479)
++..+++++.||.|..||..+|+.+..+.. ..+ .+. ....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~--------------------------------------~s~p~~~~ 48 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPV--------------------------------------LQVPTHVE 48 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCS--------------------------------------CCCC----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCc--------------------------------------eecceEcC
Confidence 577899999999999999999998866653 111 011 1122
Q ss_pred C-EEEEEeCCCcEEEEEccCCCCCcccceeeecCC------CCCeEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeC
Q 011711 282 E-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGH------TRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNG 354 (479)
Q Consensus 282 ~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h------~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 354 (479)
+ .+++++.||.|+.||..+++.. .....+ ..++. ..++.+++++.|+.|+.||.++++.+.++..
T Consensus 49 g~~~v~~s~dg~l~a~d~~tG~~~-----w~~~~~~~~~~~~sp~~---~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~ 120 (369)
T 2hz6_A 49 EPAFLPDPNDGSLYTLGSKNNEGL-----TKLPFTIPELVQASPCR---SSDGILYMGKKQDIWYVIDLLTGEKQQTLSS 120 (369)
T ss_dssp -CCEEECTTTCCEEEC-----CCS-----EECSCCHHHHHTTCSCC--------CCCCEEEEEEEEECCC----------
T ss_pred CCEEEEeCCCCEEEEEECCCCcee-----eeeeccCccccccCceE---ecCCEEEEEeCCCEEEEEECCCCcEEEEecC
Confidence 3 5666788999999998776531 111111 11211 1356788888999999999999999888876
Q ss_pred CCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCC---CcEEEEEeCCCeEEEeecC
Q 011711 355 HTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDG---NPVLICSCNDDSVHLYELP 431 (479)
Q Consensus 355 h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~dg~v~iwd~~ 431 (479)
+.. ......+..+++++.|+.|+.||.++++.+........ .. ...+.+. . .+++++.||.|+.||..
T Consensus 121 ~~~--~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~--~~----~~~~~~~~~~~-~v~~~~~dg~v~a~d~~ 191 (369)
T 2hz6_A 121 AFA--DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY--AA----SLPEDDVDYKM-SHFVSNGDGLVVTVDSE 191 (369)
T ss_dssp --------------EEEEEEEEEEECCCSSSSSCCCEEEEEEE--CC----BCCCCCTTCCC-CEEEEETSCEEEEECTT
T ss_pred CCc--ccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc--cC----ccccCCccccc-eEEEECCCCEEEEEECC
Confidence 542 12223578899999999999999998876654432211 11 1112221 2 35667889999999999
Q ss_pred CCceeeeeeccCceEE-EEECCCc
Q 011711 432 SFMERGRIFSRREVRV-IETGPDG 454 (479)
Q Consensus 432 ~~~~~~~~~~~~~v~~-l~~s~~g 454 (479)
+++.+.+.....++.. ..++++|
T Consensus 192 tG~~~W~~~~~~pv~~~~~~~~dg 215 (369)
T 2hz6_A 192 SGDVLWIQNYASPVVAFYVWQREG 215 (369)
T ss_dssp TCCEEEEEECSSCEEEEEECTTSS
T ss_pred CCcEEEEecCCCceEEEEEecCCc
Confidence 9999888776555543 4555666
No 225
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.99 E-value=8e-08 Score=99.28 Aligned_cols=266 Identities=11% Similarity=0.021 Sum_probs=167.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEecCCce------------eE-EEeCCCEEEEEcCCeEEEEEcCCCceEE-ecC
Q 011711 204 SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV------------GS-LICEGPWVFVGMPNVVKAWHIESSAEFS-LDG 269 (479)
Q Consensus 204 ~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~------------~~-~~~~~~~l~~~~~~~i~v~~~~~~~~~~-~~~ 269 (479)
+..++.++.++.|.-+|..+|+.+..+...... .. ...++.+++.+.++.+..+|..++++.- ...
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 145 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence 567888888999999999999999988754321 11 2234555555679999999999998753 221
Q ss_pred C----CccEE-EEEEcCCEEEEEeC------CCcEEEEEccCCCCCcccceeeecC------------------------
Q 011711 270 P----VGEVY-SMVVANEMLFAGAQ------DGNILVWKGIPNTQNPFQLAALLKG------------------------ 314 (479)
Q Consensus 270 ~----~~~v~-~~~~~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~------------------------ 314 (479)
. ...+. +..+..+.++++.. +|.|..+|..+++. +..+..
T Consensus 146 ~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~-----~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 220 (668)
T 1kv9_A 146 TDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKL-----AWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (668)
T ss_dssp SCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE-----EEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred CCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcE-----EEEecccCCCCCccccccccccccccCCcc
Confidence 1 01111 12234566666654 58999999988764 111110
Q ss_pred -------CCCCeEEEEEc--CCEEEEEeCCCe-------------------EEEEECCCCcEEEEEeC--CC-------C
Q 011711 315 -------HTRPVTCLAVG--GKRLYSGSMDNT-------------------IRVWDLDTLEAVMTLNG--HT-------D 357 (479)
Q Consensus 315 -------h~~~i~~l~~~--~~~l~sgs~dg~-------------------I~iwd~~~~~~~~~~~~--h~-------~ 357 (479)
+......++++ .+.++.++.++. |..+|.++++.+..++. |. .
T Consensus 221 ~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~ 300 (668)
T 1kv9_A 221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQ 300 (668)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCC
Confidence 00111235564 678888887764 99999999999998874 22 1
Q ss_pred Cc--EEEEEcCC---EEEEEeCCCeEEEEEcCCCcceEEeccccCc---------------------cceEEE-------
Q 011711 358 AP--MSLLCWDQ---YLLSCSLDNTIKVWIMTEEGNLEVAYTHNED---------------------HGVLAL------- 404 (479)
Q Consensus 358 ~v--~~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---------------------~~~~~~------- 404 (479)
+. ..+...++ .++.++.+|.++++|..+++.+......... ......
T Consensus 301 ~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~ 380 (668)
T 1kv9_A 301 QITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGA 380 (668)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCS
T ss_pred CcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccc
Confidence 11 12334454 6889999999999999998876332211100 000000
Q ss_pred ----eeeeCCCCCcEEEE-----------------------------------EeCCCeEEEeecCCCceeeeeeccCce
Q 011711 405 ----GGLNDPDGNPVLIC-----------------------------------SCNDDSVHLYELPSFMERGRIFSRREV 445 (479)
Q Consensus 405 ----~~~~~~~~~~~l~s-----------------------------------~~~dg~v~iwd~~~~~~~~~~~~~~~v 445 (479)
...++|+...+++. ...+|.|..||+.+++.+.+.......
T Consensus 381 ~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~ 460 (668)
T 1kv9_A 381 HNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHW 460 (668)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSC
T ss_pred cCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCC
Confidence 01224554422221 113488999999999999888765554
Q ss_pred EEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 446 RVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 446 ~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
....+...+ +++.++.||.|+.||..+++
T Consensus 461 ~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 461 NGGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence 433333344 88889999999999988764
No 226
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.98 E-value=1.3e-07 Score=87.91 Aligned_cols=226 Identities=15% Similarity=0.081 Sum_probs=135.2
Q ss_pred eEEEecccccEEEEEeCCCCC-EEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCc
Q 011711 185 LAKLEGHKKAVSGIALPLRSD-KLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSA 263 (479)
Q Consensus 185 ~~~~~~H~~~V~~l~~s~~~~-~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~ 263 (479)
+..+..+........|+++++ ++++...++.|..|+. +++. ..+.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~-------------------------------- 82 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLL-------------------------------- 82 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEE--------------------------------
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEe--------------------------------
Confidence 444555566778899999998 6677777889999987 4442 2221
Q ss_pred eEEecCCCccEEEEEEcCC-EEEEEe-CCCcEEEEEccCCCCCcccceeeecCC-CCCeEEEEEc--CCEEEE----EeC
Q 011711 264 EFSLDGPVGEVYSMVVANE-MLFAGA-QDGNILVWKGIPNTQNPFQLAALLKGH-TRPVTCLAVG--GKRLYS----GSM 334 (479)
Q Consensus 264 ~~~~~~~~~~v~~~~~~~~-~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~h-~~~i~~l~~~--~~~l~s----gs~ 334 (479)
.+...+..++++++ .++++. .++.|.+|+.. +.. ........+. ...+..++++ |+++++ |..
T Consensus 83 -----~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~--~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~ 154 (305)
T 3dr2_A 83 -----DATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA--HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLR 154 (305)
T ss_dssp -----ESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE--EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGS
T ss_pred -----CCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE--EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcc
Confidence 13344667777766 444444 45678888864 321 0111111111 1335567775 666665 332
Q ss_pred -------------CCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCC------CeEEEEEcCCCcceEE--
Q 011711 335 -------------DNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLD------NTIKVWIMTEEGNLEV-- 391 (479)
Q Consensus 335 -------------dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~d------g~i~iwd~~~~~~~~~-- 391 (479)
.+.|..+|..+++..... .......++++ ++.|+.+... +.|.+|++.... +..
T Consensus 155 ~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~ 231 (305)
T 3dr2_A 155 KPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRR 231 (305)
T ss_dssp CGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEE
T ss_pred ccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCe
Confidence 356888888776654333 33345667776 6677776665 789999987654 211
Q ss_pred -ecc-ccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcCCC
Q 011711 392 -AYT-HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDGTG 463 (479)
Q Consensus 392 -~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~dg 463 (479)
+.. .......+.+ +++|+ +.+ +..+ .|.+|+. +++.+..+.....+..++|+|++ .|..++.++
T Consensus 232 ~~~~~~~~~pdgi~~----d~~G~-lwv-~~~~-gv~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 232 HFASVPDGLPDGFCV----DRGGW-LWS-SSGT-GVCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp EEECCSSSCCCSEEE----CTTSC-EEE-CCSS-EEEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETTE
T ss_pred EEEECCCCCCCeEEE----CCCCC-EEE-ecCC-cEEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCCe
Confidence 111 1111223333 68888 444 3344 5999998 56666676665579999999988 666665554
No 227
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.98 E-value=3.9e-07 Score=92.16 Aligned_cols=280 Identities=9% Similarity=-0.004 Sum_probs=168.1
Q ss_pred CCeeEeCCC-CCeEEEeec-CCCceeeEEEecccc-cE----------EEEEeCCCCCEEEEEeCCCcEEEEECCCCceE
Q 011711 161 SGNCVKGDE-CRFWHSWFC-GEGFTMLAKLEGHKK-AV----------SGIALPLRSDKLYSGSRDGTVQLWDCHTGQSA 227 (479)
Q Consensus 161 ~~~~~~g~~-d~~i~vw~~-~~~~~~~~~~~~H~~-~V----------~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~ 227 (479)
.+.+..++. ++.+..+|. .++ +.+.++..... .+ ..+++ ++..++.++.|+.|..+|..+|+.+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~ 138 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPG-KIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKIN 138 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTT-SEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCc-cEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 344545555 788888998 788 55655543211 00 11222 3667888999999999999999999
Q ss_pred EEEecCC-----cee--EEEeCCCEEEEEc------CCeEEEEEcCCCceEE-ecCCCcc--------------------
Q 011711 228 SVINLGA-----EVG--SLICEGPWVFVGM------PNVVKAWHIESSAEFS-LDGPVGE-------------------- 273 (479)
Q Consensus 228 ~~~~~~~-----~~~--~~~~~~~~l~~~~------~~~i~v~~~~~~~~~~-~~~~~~~-------------------- 273 (479)
....... .+. .+..++.+++... ++.|..+|.++++..- .......
T Consensus 139 W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~ 218 (571)
T 2ad6_A 139 WEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG 218 (571)
T ss_dssp EEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred EEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccc
Confidence 8887654 111 1233554444443 6899999999988752 2111000
Q ss_pred -----------------E-EEEEEcCC--EEEEEeCC----------------CcEEEEEccCCCCCcccceeeec--CC
Q 011711 274 -----------------V-YSMVVANE--MLFAGAQD----------------GNILVWKGIPNTQNPFQLAALLK--GH 315 (479)
Q Consensus 274 -----------------v-~~~~~~~~--~l~~g~~d----------------g~i~iwd~~~~~~~~~~~~~~~~--~h 315 (479)
+ ..++++++ .++.+..+ +.|..+|..+++. ...++ .|
T Consensus 219 ~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~-----~W~~~~~~~ 293 (571)
T 2ad6_A 219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA-----KWGYQKTPH 293 (571)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE-----EEEEESSTT
T ss_pred cccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE-----EEEecCCCC
Confidence 0 12445543 66666542 3589999888753 22221 11
Q ss_pred --------CCCeE-EEEEcC---CEEEEEeCCCeEEEEECCCCcEEEEEeCCCC-------------Cc-----------
Q 011711 316 --------TRPVT-CLAVGG---KRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD-------------AP----------- 359 (479)
Q Consensus 316 --------~~~i~-~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~-------------~v----------- 359 (479)
..++. ....++ ..++.++.+|.++++|..+++.+..+..... ++
T Consensus 294 d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~ 373 (571)
T 2ad6_A 294 DEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDH 373 (571)
T ss_dssp CSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTC
T ss_pred cccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCC
Confidence 23332 222345 3577899999999999999999887653220 00
Q ss_pred ---------------EEEEEc--CCEEEEEe-------------------------------------CCCeEEEEEcCC
Q 011711 360 ---------------MSLLCW--DQYLLSCS-------------------------------------LDNTIKVWIMTE 385 (479)
Q Consensus 360 ---------------~~~~~~--~~~l~s~s-------------------------------------~dg~i~iwd~~~ 385 (479)
..++++ ...++... .+|.|..||+.+
T Consensus 374 ~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t 453 (571)
T 2ad6_A 374 KGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT 453 (571)
T ss_dssp CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT
T ss_pred CceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCC
Confidence 012222 34444432 357899999998
Q ss_pred CcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceE--EEEECCCc
Q 011711 386 EGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVR--VIETGPDG 454 (479)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~--~l~~s~~g 454 (479)
++.+............ .+. ..+. +++.++.|+.|+.+|..+++.+.++.....+. -+.+..+|
T Consensus 454 G~~~W~~~~~~~~~~~-~~~----t~gg-~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G 518 (571)
T 2ad6_A 454 GKAKWTKWEKFAAWGG-TLY----TKGG-LVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKG 518 (571)
T ss_dssp CCEEEEEEESSCCCSB-CEE----ETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred CCEEEEecCCCCccce-eEE----ECCC-EEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECC
Confidence 8776655433221111 111 2233 56668899999999999999998887543332 23344677
No 228
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.98 E-value=5.4e-06 Score=87.73 Aligned_cols=300 Identities=11% Similarity=0.050 Sum_probs=182.1
Q ss_pred CeeEeCCCCCeEEEeecCCCceeeEE-EecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec--------
Q 011711 162 GNCVKGDECRFWHSWFCGEGFTMLAK-LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL-------- 232 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~-~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~-------- 232 (479)
+.+..|..++-+..|+..++ +.... ...+...|.++...+++.+.+ ++.++-+..||..+++.......
T Consensus 184 g~lwigt~~~Gl~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~ 261 (795)
T 4a2l_A 184 DQIYIGTSTDGLYTYSITQK-TFEKVIPILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSIS 261 (795)
T ss_dssp TEEEEEESSSCEEEEETTTC-CEEECC----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCS
T ss_pred CCEEEEECCCCEEEEeCCCC-eEEEecCCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccC
Confidence 34444555445778887655 22211 112356788888877776544 55444589999887765433221
Q ss_pred CCceeEEEe--CCCEEEEEcCCeEEEEEcCCCceEEecC--------CCccEEEEEEcCC-EEEEEeCCCcEEEEEccCC
Q 011711 233 GAEVGSLIC--EGPWVFVGMPNVVKAWHIESSAEFSLDG--------PVGEVYSMVVANE-MLFAGAQDGNILVWKGIPN 301 (479)
Q Consensus 233 ~~~~~~~~~--~~~~l~~~~~~~i~v~~~~~~~~~~~~~--------~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~ 301 (479)
...+.++.. ++.+.++..+ .|.+|+..+........ ....|.++..+++ .|.+|+.++-|..|+....
T Consensus 262 ~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~ 340 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRN 340 (795)
T ss_dssp CSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGG
T ss_pred CCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcc
Confidence 133555554 4555555544 78899988776544321 2357999999877 8888998888999987654
Q ss_pred CCCcccceeee----cCCCCCeEEEEEc-CCEEEEEeCCCeEEEEECCCCcEEEEEeC--------CCCCcEEEEEc--C
Q 011711 302 TQNPFQLAALL----KGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNG--------HTDAPMSLLCW--D 366 (479)
Q Consensus 302 ~~~~~~~~~~~----~~h~~~i~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--------h~~~v~~~~~~--~ 366 (479)
.. ...... ......|.++..+ ...|..|+.++-|..||..+++...-... ....|.++..+ +
T Consensus 341 ~~---~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g 417 (795)
T 4a2l_A 341 RF---KNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK 417 (795)
T ss_dssp SS---EEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT
T ss_pred cc---eEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC
Confidence 32 111110 1124568999987 56788899988899999887765432211 23557888776 3
Q ss_pred CEEEEEeCCCeEEEEEcCCCcceEEeccccC-ccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-----
Q 011711 367 QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNE-DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF----- 440 (479)
Q Consensus 367 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~----- 440 (479)
..|..|+.++-|..||..+++.. .+..... .......++..+++|. +.+ |+. +-+.+||..+++......
T Consensus 418 ~~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~-lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~ 493 (795)
T 4a2l_A 418 SLVYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGN-LWL-GTL-SALVRFNPEQRSFTTIEKEKDGT 493 (795)
T ss_dssp TEEEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSC-EEE-EES-SCEEEEETTTTEEEECCBCTTCC
T ss_pred CEEEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCC-EEE-Eec-CceeEEeCCCCeEEEcccccccc
Confidence 43888888888999998775432 2221110 0111123333457777 333 444 458889987754432211
Q ss_pred --ccCceEEEEECCCceEEEEcCCCcEEEEEecc
Q 011711 441 --SRREVRVIETGPDGLFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 441 --~~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~ 472 (479)
....|.++...++|.|..|+. +.|..|+...
T Consensus 494 ~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~ 526 (795)
T 4a2l_A 494 PVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEG 526 (795)
T ss_dssp BCCCCCEEEEEECTTCCEEEEES-SCEEEEEEET
T ss_pred ccCCceEEEEEECCCCCEEEEeC-CceEEEeCCC
Confidence 135689999999994444444 4577887654
No 229
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.98 E-value=2e-06 Score=87.01 Aligned_cols=283 Identities=10% Similarity=0.001 Sum_probs=167.5
Q ss_pred CCeeEeCCC-CCeEEEeec-CCCceeeEEEeccccc-----------EEEEEeCCCCCE----EEEEeCCCcEEEEECCC
Q 011711 161 SGNCVKGDE-CRFWHSWFC-GEGFTMLAKLEGHKKA-----------VSGIALPLRSDK----LYSGSRDGTVQLWDCHT 223 (479)
Q Consensus 161 ~~~~~~g~~-d~~i~vw~~-~~~~~~~~~~~~H~~~-----------V~~l~~s~~~~~----l~s~s~Dg~v~vwd~~~ 223 (479)
.+.+..++. ++.|.-+|. .++ +.+-++...... ...+++.|.+.. ++.++.|+.|..+|..+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG-~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPG-TILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTT-SEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCC-cEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCC
Confidence 345555555 788888898 788 666655432210 123444344445 88899999999999999
Q ss_pred CceEEEEecCC-----cee--EEEeCCCEEEEEc------CCeEEEEEcCCCceEE-ecCCCcc----------------
Q 011711 224 GQSASVINLGA-----EVG--SLICEGPWVFVGM------PNVVKAWHIESSAEFS-LDGPVGE---------------- 273 (479)
Q Consensus 224 ~~~~~~~~~~~-----~~~--~~~~~~~~l~~~~------~~~i~v~~~~~~~~~~-~~~~~~~---------------- 273 (479)
|+.+....... .+. .+..++.+++.+. ++.|..+|.++++++- .......
T Consensus 141 G~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~ 220 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHY 220 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred CCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccc
Confidence 99998877654 111 1334554444332 7899999999998752 2111000
Q ss_pred ---------------------E-EEEEEcC--CEEEEEeCC----------------CcEEEEEccCCCCCcccceeeec
Q 011711 274 ---------------------V-YSMVVAN--EMLFAGAQD----------------GNILVWKGIPNTQNPFQLAALLK 313 (479)
Q Consensus 274 ---------------------v-~~~~~~~--~~l~~g~~d----------------g~i~iwd~~~~~~~~~~~~~~~~ 313 (479)
+ ..+++++ ++++.+..+ +.|..+|..+++.. -.....
T Consensus 221 g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~---W~~q~~ 297 (599)
T 1w6s_A 221 GQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK---FGYQKT 297 (599)
T ss_dssp CCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE---EEEESS
T ss_pred cccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCcee---eEeecC
Confidence 0 0234433 377777665 37999999887531 111112
Q ss_pred CC--------CCCeE-EEE-EcC---CEEEEEeCCCeEEEEECCCCcEEEEEeCCC------------CC-c--------
Q 011711 314 GH--------TRPVT-CLA-VGG---KRLYSGSMDNTIRVWDLDTLEAVMTLNGHT------------DA-P-------- 359 (479)
Q Consensus 314 ~h--------~~~i~-~l~-~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~------------~~-v-------- 359 (479)
.| ..++. .+. .++ ..++.++.+|.++++|.++++.+....... .. +
T Consensus 298 ~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~ 377 (599)
T 1w6s_A 298 PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTR 377 (599)
T ss_dssp TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCC
T ss_pred CCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCC
Confidence 22 12332 121 235 467789999999999999999988765221 00 0
Q ss_pred ------------------EEEEEc--CCEEEEE---------------------------------e------CCCeEEE
Q 011711 360 ------------------MSLLCW--DQYLLSC---------------------------------S------LDNTIKV 380 (479)
Q Consensus 360 ------------------~~~~~~--~~~l~s~---------------------------------s------~dg~i~i 380 (479)
..++++ ..++++. + .+|.|..
T Consensus 378 ~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A 457 (599)
T 1w6s_A 378 MDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKA 457 (599)
T ss_dssp TTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEE
T ss_pred CCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEE
Confidence 011111 1222111 1 3578999
Q ss_pred EEcCCCcceEEeccccCccce-EEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCc--eEEEEECCCc
Q 011711 381 WIMTEEGNLEVAYTHNEDHGV-LALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRRE--VRVIETGPDG 454 (479)
Q Consensus 381 wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--v~~l~~s~~g 454 (479)
||+.+++.+............ +. ..+. +++.++.|+.++.||.++++++.++..... ..-+.+..+|
T Consensus 458 ~D~~tG~~~W~~~~~~~~~~g~~~------tagg-~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G 527 (599)
T 1w6s_A 458 YNAITGDYKWEKMERFAVWGGTMA------TAGD-LVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKG 527 (599)
T ss_dssp ECTTTCCEEEEEEESSCCCSBCEE------ETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred EECCCCCEEeEecCCCCccCcceE------ecCC-EEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCC
Confidence 999988776655432111111 21 2344 566689999999999999999988865322 2224455677
No 230
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.96 E-value=4.3e-08 Score=102.08 Aligned_cols=237 Identities=9% Similarity=0.029 Sum_probs=142.2
Q ss_pred CCCCCCCCCCCCCCCceecc-----CCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccC
Q 011711 87 SNHKKSPPSYNCPKNNVRVS-----SGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS 161 (479)
Q Consensus 87 ~gh~~~i~~~~~s~~g~~la-----s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 161 (479)
++|...+.+++|||||+++| +|+++.+|++||+.+..... ..+.......+++. .+
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~------------------~~~~~~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE------------------TPLKDVKFSGISWL-GN 185 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE------------------EEEEEEESCCCEEE-TT
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc------------------cccCCceeccEEEe-CC
Confidence 45666777889999999999 67777899999877654200 01111111234444 44
Q ss_pred CeeEeCCCC-------------CeEEEeecCCCc---eeeEEEec-ccccEEEEEeCCCCCEEEEEeC----CCcEEEEE
Q 011711 162 GNCVKGDEC-------------RFWHSWFCGEGF---TMLAKLEG-HKKAVSGIALPLRSDKLYSGSR----DGTVQLWD 220 (479)
Q Consensus 162 ~~~~~g~~d-------------~~i~vw~~~~~~---~~~~~~~~-H~~~V~~l~~s~~~~~l~s~s~----Dg~v~vwd 220 (479)
..++....+ ..|.+|++.++. .++..... |...+.++.|+|||++|+.... +..|.++|
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 265 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKD 265 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence 555544433 459999998763 23444444 5566889999999998865432 25899999
Q ss_pred CCCCc-eEEEEecC-Cc-eeEEEeCCCEEE-EEc----CCeEEEEEcCCCce---EEecCCCccEEEEEEcCCEEEEEe-
Q 011711 221 CHTGQ-SASVINLG-AE-VGSLICEGPWVF-VGM----PNVVKAWHIESSAE---FSLDGPVGEVYSMVVANEMLFAGA- 288 (479)
Q Consensus 221 ~~~~~-~~~~~~~~-~~-~~~~~~~~~~l~-~~~----~~~i~v~~~~~~~~---~~~~~~~~~v~~~~~~~~~l~~g~- 288 (479)
+.++. ....+... .. ...+..++..++ .+. ...|..+++.++.. ..+..+...+..+....+.|+...
T Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~ 345 (693)
T 3iuj_A 266 LSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYM 345 (693)
T ss_dssp TTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEE
T ss_pred CCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEE
Confidence 98763 23333322 22 223445555444 442 35799999987654 334444444446666677555554
Q ss_pred CCC--cEEEEEccCCCCCcccceeeec-CCCCCeEEEEEc--CCEEEEEeCC----CeEEEEECCCCcE
Q 011711 289 QDG--NILVWKGIPNTQNPFQLAALLK-GHTRPVTCLAVG--GKRLYSGSMD----NTIRVWDLDTLEA 348 (479)
Q Consensus 289 ~dg--~i~iwd~~~~~~~~~~~~~~~~-~h~~~i~~l~~~--~~~l~sgs~d----g~I~iwd~~~~~~ 348 (479)
.++ .|++||+..+. ...+. .....+..+.++ ++.++....+ ++|..||+.+++.
T Consensus 346 ~~g~~~l~~~d~~g~~------~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 346 VDATARVEQFDYEGKR------VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp ETTEEEEEEECTTSCE------EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred ECCeeEEEEEECCCCe------eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 454 68888876432 12222 233445555554 4544444433 7899999988764
No 231
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.94 E-value=1.2e-06 Score=80.87 Aligned_cols=225 Identities=14% Similarity=0.141 Sum_probs=139.2
Q ss_pred EecccccEEEEEeCCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEe--CCCEEEEEcCCeEEEEEcCCCce
Q 011711 188 LEGHKKAVSGIALPLRS-DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC--EGPWVFVGMPNVVKAWHIESSAE 264 (479)
Q Consensus 188 ~~~H~~~V~~l~~s~~~-~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~i~v~~~~~~~~ 264 (479)
+..+..--.+..|++++ .++++...++.|..||..+++. ..+.....+..+.. +++++++ .++.|.+||.++++.
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~-~~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVAT-IGTKFCALNWKEQSA 85 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEE-ETTEEEEEETTTTEE
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEE-ECCeEEEEECCCCcE
Confidence 33444556788898854 5566666789999999988765 44555566666554 6775555 477899999988765
Q ss_pred EEecC-----CCccEEEEEEcCC-EEEEEeC----------CCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--C
Q 011711 265 FSLDG-----PVGEVYSMVVANE-MLFAGAQ----------DGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--G 326 (479)
Q Consensus 265 ~~~~~-----~~~~v~~~~~~~~-~l~~g~~----------dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~ 326 (479)
..+.. ....++.++++++ .+.+++. ...-.+|.+..... ...+..+......++++ +
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-----~~~~~~~~~~pngi~~spdg 160 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-----VKKYFDQVDISNGLDWSLDH 160 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-----EEEEEEEESBEEEEEECTTS
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-----EEEEeeccccccceEEcCCC
Confidence 43321 2345788999887 4444431 12345555543221 11122233345778886 6
Q ss_pred CEE-EEEeCCCeEEEEEC--CCCcEE-----EEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEecccc
Q 011711 327 KRL-YSGSMDNTIRVWDL--DTLEAV-----MTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHN 396 (479)
Q Consensus 327 ~~l-~sgs~dg~I~iwd~--~~~~~~-----~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 396 (479)
+.+ ++.+.++.|.+||+ .+++.. ..+..+...+..+.++ +++.++...++.|..||..+++.+..+....
T Consensus 161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~ 240 (297)
T 3g4e_A 161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV 240 (297)
T ss_dssp CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence 655 55566889999997 455432 2223333456677776 6677777778899999998777766665554
Q ss_pred CccceEEEeeeeCCCCCcEEEEEeCC
Q 011711 397 EDHGVLALGGLNDPDGNPVLICSCND 422 (479)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~s~~~d 422 (479)
.....+++. .|+++.++++...+
T Consensus 241 ~~~t~~~f~---g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 241 DKTTSCCFG---GKNYSEMYVTCARD 263 (297)
T ss_dssp SBEEEEEEE---SGGGCEEEEEEBCT
T ss_pred CCceEEEEe---CCCCCEEEEEcCCc
Confidence 444444442 27777566665443
No 232
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.94 E-value=5.9e-07 Score=92.75 Aligned_cols=268 Identities=16% Similarity=0.132 Sum_probs=166.4
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEeccccc----------E-EEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEE
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKA----------V-SGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV 229 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~----------V-~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~ 229 (479)
.+.+..++.++.+..+|..++ +.+.++...... + ..+++ .+..++.++.|+.|..+|..+|+.+..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASG-KELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTC-CEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCC-hhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 445555566788999999888 666666543211 0 11222 356788899999999999999999988
Q ss_pred EecCCc-----e--eEEEeCCCEEEEEc------CCeEEEEEcCCCceEE-ecC---C-Cc-------------------
Q 011711 230 INLGAE-----V--GSLICEGPWVFVGM------PNVVKAWHIESSAEFS-LDG---P-VG------------------- 272 (479)
Q Consensus 230 ~~~~~~-----~--~~~~~~~~~l~~~~------~~~i~v~~~~~~~~~~-~~~---~-~~------------------- 272 (479)
+..... + ..+..++.+++... ++.|..+|.++++.+- ... . ..
T Consensus 143 ~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~ 222 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY 222 (668)
T ss_dssp EECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred eccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence 876421 1 11223444444322 4789999999998752 211 0 00
Q ss_pred --------cEEEEEEcC--CEEEEEeCCC-------------------cEEEEEccCCCCCcccceeeec--CCC-----
Q 011711 273 --------EVYSMVVAN--EMLFAGAQDG-------------------NILVWKGIPNTQNPFQLAALLK--GHT----- 316 (479)
Q Consensus 273 --------~v~~~~~~~--~~l~~g~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~--~h~----- 316 (479)
....+++++ +.+++++.++ .|..+|..+++. ...++ .|.
T Consensus 223 w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~-----~W~~~~~~~~~wd~~ 297 (668)
T 1kv9_A 223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL-----AWHYQVTPGDSWDFT 297 (668)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE-----EEEEESSTTCCSCCC
T ss_pred eeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce-----eeEeecCCCcccccc
Confidence 011356655 3888887766 399999888763 22222 121
Q ss_pred --CCeE--EEEEcCC---EEEEEeCCCeEEEEECCCCcEEEEEeCCCCC------------c------------------
Q 011711 317 --RPVT--CLAVGGK---RLYSGSMDNTIRVWDLDTLEAVMTLNGHTDA------------P------------------ 359 (479)
Q Consensus 317 --~~i~--~l~~~~~---~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~------------v------------------ 359 (479)
.+.. .+.++++ .++.++.+|.++++|..+++.+......... +
T Consensus 298 ~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~ 377 (668)
T 1kv9_A 298 ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSP 377 (668)
T ss_dssp CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCT
T ss_pred CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCC
Confidence 2222 3444554 6899999999999999999998554322100 0
Q ss_pred ------EEEEEc--CCEEEEE------------------------------------eCCCeEEEEEcCCCcceEEeccc
Q 011711 360 ------MSLLCW--DQYLLSC------------------------------------SLDNTIKVWIMTEEGNLEVAYTH 395 (479)
Q Consensus 360 ------~~~~~~--~~~l~s~------------------------------------s~dg~i~iwd~~~~~~~~~~~~~ 395 (479)
..++++ ...++.. ..+|.|..||+.+++.+......
T Consensus 378 ~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~ 457 (668)
T 1kv9_A 378 FGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP 457 (668)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES
T ss_pred ccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC
Confidence 001222 2333321 13488999999998876655443
Q ss_pred cCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeecc
Q 011711 396 NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSR 442 (479)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 442 (479)
...... .+. ..+. +++.++.|+.++.||..+++.+..+...
T Consensus 458 ~~~~~~-~~~----t~gg-~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 458 THWNGG-TLS----TAGN-LVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp SSCCCC-EEE----ETTT-EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCCcCc-eeE----eCCC-EEEEECCcccchhhhhhcChhheEecCC
Confidence 322211 221 3344 6777899999999999999999888753
No 233
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.93 E-value=6.2e-07 Score=86.93 Aligned_cols=220 Identities=12% Similarity=0.103 Sum_probs=140.1
Q ss_pred CeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCC--cEEEEECCCCceEEEE
Q 011711 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDG--TVQLWDCHTGQSASVI 230 (479)
Q Consensus 153 ~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg--~v~vwd~~~~~~~~~~ 230 (479)
..+++......+++...++.|++||.+++ ........ ..... ++|+++++.|+.+..++ .|.+++...+.....+
T Consensus 134 ~~la~d~~g~lyv~d~~~~~I~~id~~~g-~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~ 210 (409)
T 3hrp_A 134 WGIAAVGNNTVLAYQRDDPRVRLISVDDN-KVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI 210 (409)
T ss_dssp EEEEECSTTEEEEEETTTTEEEEEETTTT-EEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE
T ss_pred eEEEEeCCCCEEEEecCCCcEEEEECCCC-EEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEe
Confidence 35566655666677777899999999877 44444443 23333 99999999999998876 7999998776654444
Q ss_pred ----e-cCCcee--EEEe-CCCEEEEEcCCeEEEEEcCCCceEEe-----cCCCccE--EEEEEcCC---EEEEEeCCCc
Q 011711 231 ----N-LGAEVG--SLIC-EGPWVFVGMPNVVKAWHIESSAEFSL-----DGPVGEV--YSMVVANE---MLFAGAQDGN 292 (479)
Q Consensus 231 ----~-~~~~~~--~~~~-~~~~l~~~~~~~i~v~~~~~~~~~~~-----~~~~~~v--~~~~~~~~---~l~~g~~dg~ 292 (479)
. ...... .+.+ ++.++++..++.|..||..++..... .+....- ..++++++ ++++-..++.
T Consensus 211 g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~ 290 (409)
T 3hrp_A 211 GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSS 290 (409)
T ss_dssp EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTE
T ss_pred eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCE
Confidence 1 122222 3334 45555555678899999988765433 1222222 28999883 5555566788
Q ss_pred EEEEEccCCCCCcccceeeecCC---------------CCCeEEEEEc--CCEEEEEe-CCCeEEEEECCCCcEEEEEeC
Q 011711 293 ILVWKGIPNTQNPFQLAALLKGH---------------TRPVTCLAVG--GKRLYSGS-MDNTIRVWDLDTLEAVMTLNG 354 (479)
Q Consensus 293 i~iwd~~~~~~~~~~~~~~~~~h---------------~~~i~~l~~~--~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~ 354 (479)
|+.|+.... ...+.++ -.....++++ ++++++-+ .++.|+.||+.+++. .++.+
T Consensus 291 I~~~~~~g~-------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g 362 (409)
T 3hrp_A 291 VYKITPDGE-------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAG 362 (409)
T ss_dssp EEEECTTCC-------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEE
T ss_pred EEEEecCCC-------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeC
Confidence 999986543 1111111 2346788887 67667766 789999999877764 44444
Q ss_pred C---------------CCCcEEEEEc--CCEEEEEeCCCeEEEEEc
Q 011711 355 H---------------TDAPMSLLCW--DQYLLSCSLDNTIKVWIM 383 (479)
Q Consensus 355 h---------------~~~v~~~~~~--~~~l~s~s~dg~i~iwd~ 383 (479)
+ -.....++++ +.++++-..++.|+.+++
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 3 1235666666 445555555667776654
No 234
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.88 E-value=2.1e-06 Score=80.55 Aligned_cols=212 Identities=12% Similarity=-0.013 Sum_probs=131.8
Q ss_pred eEEEeccCC-eeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 011711 154 NVCYHWLSG-NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (479)
Q Consensus 154 ~~c~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~ 232 (479)
..++.+..+ .++++..++.|..|+..++ +. ..+. +...|.+++++++++++++. .+ .|.+||..+++.......
T Consensus 53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~-~~-~~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~ 127 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNILERELHELHLASG-RK-TVHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAEL 127 (326)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTT-EE-EEEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECS
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEECCCC-cE-EEEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeC
Confidence 344555433 4556666789999999877 32 2232 34679999999999877765 44 499999988876544332
Q ss_pred CC-----ceeEEE--eCCCEEEEEcC-------CeEEEEEcCCCceEEecCCCccEEEEEEcCC--EE-EEEeCCCcEEE
Q 011711 233 GA-----EVGSLI--CEGPWVFVGMP-------NVVKAWHIESSAEFSLDGPVGEVYSMVVANE--ML-FAGAQDGNILV 295 (479)
Q Consensus 233 ~~-----~~~~~~--~~~~~l~~~~~-------~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l-~~g~~dg~i~i 295 (479)
.. .+..+. ++|++.++... +.|..++ +++.............++++++ .+ ++.+.++.|.+
T Consensus 128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~ 205 (326)
T 2ghs_A 128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMR 205 (326)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEE
Confidence 11 233333 36776665532 3555555 4443333333345678999877 45 44456789999
Q ss_pred EEcc--CC-CCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc---CC
Q 011711 296 WKGI--PN-TQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW---DQ 367 (479)
Q Consensus 296 wd~~--~~-~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~---~~ 367 (479)
||+. ++ .....+....+.........++++ +++.++...++.|.+||. +++.+..+..+...+.++++. ++
T Consensus 206 ~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~ 284 (326)
T 2ghs_A 206 VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDAS 284 (326)
T ss_dssp EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSC
T ss_pred EEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCC
Confidence 9986 33 221111222233334556778886 666666656789999998 677888887777678888875 24
Q ss_pred EEEEEe
Q 011711 368 YLLSCS 373 (479)
Q Consensus 368 ~l~s~s 373 (479)
.|+.++
T Consensus 285 ~L~vt~ 290 (326)
T 2ghs_A 285 RLLVTS 290 (326)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 454443
No 235
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.88 E-value=2.5e-06 Score=86.32 Aligned_cols=266 Identities=11% Similarity=0.003 Sum_probs=163.1
Q ss_pred CCEEEEEeC-CCcEEEEEC-CCCceEEEEecCCce------------eE-EEeCCCEEEEEcCCeEEEEEcCCCceEEec
Q 011711 204 SDKLYSGSR-DGTVQLWDC-HTGQSASVINLGAEV------------GS-LICEGPWVFVGMPNVVKAWHIESSAEFSLD 268 (479)
Q Consensus 204 ~~~l~s~s~-Dg~v~vwd~-~~~~~~~~~~~~~~~------------~~-~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~ 268 (479)
+..++.++. ++.|.-+|. .+|+.+..+...... .. ...++.+++...++.+..+|..+++..-..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~ 141 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEV 141 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEEEe
Confidence 556777777 899999999 999999888765421 11 223455555557899999999999875321
Q ss_pred CCCc-----cEE-EEEEcCCEEEEEeC------CCcEEEEEccCCCCCcccceeeecCCC--------------------
Q 011711 269 GPVG-----EVY-SMVVANEMLFAGAQ------DGNILVWKGIPNTQNPFQLAALLKGHT-------------------- 316 (479)
Q Consensus 269 ~~~~-----~v~-~~~~~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~h~-------------------- 316 (479)
.... .+. +.....+.+++++. +|.|..+|..+++.. ..+....
T Consensus 142 ~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~-----W~~~~~~~~~~~~~~p~~~~~~~~~G~ 216 (571)
T 2ad6_A 142 EVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELK-----WRAFATGSDDSVRLAKDFNSANPHYGQ 216 (571)
T ss_dssp ECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEE-----EEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred cCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEE-----EEEccCCCccccccCcccccccccccc
Confidence 1110 111 12234567777765 799999999887631 1111000
Q ss_pred -----------------CCe-EEEEEc--CCEEEEEeCC----------------CeEEEEECCCCcEEEEEeCCC----
Q 011711 317 -----------------RPV-TCLAVG--GKRLYSGSMD----------------NTIRVWDLDTLEAVMTLNGHT---- 356 (479)
Q Consensus 317 -----------------~~i-~~l~~~--~~~l~sgs~d----------------g~I~iwd~~~~~~~~~~~~h~---- 356 (479)
..+ ..++++ .+.++.++.+ +.|..+|.++++.+..++...
T Consensus 217 ~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~ 296 (571)
T 2ad6_A 217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW 296 (571)
T ss_dssp SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred cccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccc
Confidence 000 123444 4566666532 369999999999998886421
Q ss_pred ------CCcE-EEEEcC---CEEEEEeCCCeEEEEEcCCCcceEEeccccC-------------cc-----------ceE
Q 011711 357 ------DAPM-SLLCWD---QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNE-------------DH-----------GVL 402 (479)
Q Consensus 357 ------~~v~-~~~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-------------~~-----------~~~ 402 (479)
.++. .....+ ..++.++.+|.+.++|..+++.+........ ++ ...
T Consensus 297 d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~ 376 (571)
T 2ad6_A 297 DFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGT 376 (571)
T ss_dssp CCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEE
T ss_pred ccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCce
Confidence 1111 111235 3577888999999999999877655432210 00 000
Q ss_pred EE-----------eeeeCCCCCcEEEEE------------------------------------eCCCeEEEeecCCCce
Q 011711 403 AL-----------GGLNDPDGNPVLICS------------------------------------CNDDSVHLYELPSFME 435 (479)
Q Consensus 403 ~~-----------~~~~~~~~~~~l~s~------------------------------------~~dg~v~iwd~~~~~~ 435 (479)
.. ...++|+...+++.. ..++.|..||..+++.
T Consensus 377 ~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~ 456 (571)
T 2ad6_A 377 NICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA 456 (571)
T ss_dssp EESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE
T ss_pred EECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE
Confidence 00 112346655333322 1357899999999999
Q ss_pred eeeeeccCceEEEEEC-CCceEEEEcCCCcEEEEEeccCC
Q 011711 436 RGRIFSRREVRVIETG-PDGLFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 436 ~~~~~~~~~v~~l~~s-~~g~l~sg~~dg~v~vw~~~~~~ 474 (479)
+.+......+....+. .+++++.++.||.|+.||..+++
T Consensus 457 ~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 457 KWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp EEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred EEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence 8888765444333322 34577779999999999987764
No 236
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.83 E-value=1.9e-07 Score=88.58 Aligned_cols=243 Identities=12% Similarity=0.018 Sum_probs=155.1
Q ss_pred cEEEEECCCCceEEEEecCCce-eEEEeCCCEEEEEc-----------CCeEEEEEcCCCceEEec-CC-------CccE
Q 011711 215 TVQLWDCHTGQSASVINLGAEV-GSLICEGPWVFVGM-----------PNVVKAWHIESSAEFSLD-GP-------VGEV 274 (479)
Q Consensus 215 ~v~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~-----------~~~i~v~~~~~~~~~~~~-~~-------~~~v 274 (479)
+|.+.|..+++.+..+..+... ..+.++++.++++. ++.|.+||..+.+..... -+ ....
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P 126 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV 126 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCT
T ss_pred eEEEEECCCCeEEEEEeCCCCCceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCc
Confidence 8889999999999999876544 23335888777764 578999999999876432 11 1234
Q ss_pred EEEEEcCC--EEEEEeC--CCcEEE--EEccCCCCCcccceeeecCCCCCeEEEEEc-CCEEEEEeCCCeEEEEECCC--
Q 011711 275 YSMVVANE--MLFAGAQ--DGNILV--WKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDT-- 345 (479)
Q Consensus 275 ~~~~~~~~--~l~~g~~--dg~i~i--wd~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~l~sgs~dg~I~iwd~~~-- 345 (479)
..+.++++ +++++.. +..|.+ +|..+ ...+..- .. ..+..+ ...+++.+.||.+.+.|+.+
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--------v~~i~v~-~~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~~ 196 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD--------DQLTKSA-SC-FHIHPGAAATHYLGSCPASLAASDLAAAP 196 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE--------EEEEECS-SC-CCCEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--------ceEEECC-Cc-eEEccCCCeEEEEEcCCCCEEEEECcccc
Confidence 56778877 6777654 467888 88765 1111110 11 112233 55667777899999999887
Q ss_pred ---CcEEEE----EeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcce--EEeccc----------cCccceEEEee
Q 011711 346 ---LEAVMT----LNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNL--EVAYTH----------NEDHGVLALGG 406 (479)
Q Consensus 346 ---~~~~~~----~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~----------~~~~~~~~~~~ 406 (479)
++.... +.....+. . ...+..++..+. +.+.+.|....... ..+... ......+.+
T Consensus 197 ~~~~~v~~~~t~~i~vg~~P~-~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~-- 271 (368)
T 1mda_H 197 AAAGIVGAQCTGAQNCSSQAA-Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK-- 271 (368)
T ss_dssp CCCEECCCCSCTTSCBCSCCE-E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEE--
T ss_pred ccCCeEEEEeeeeeeCCCCcc-c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEE--
Confidence 433211 11111222 2 333566666666 89999998653211 111000 011111334
Q ss_pred eeCCCCCcEEEEEe-C-------CCeEEEeecCCCceeeeeeccCceEEEEECCCc--eEEEEc-CCCcEEEEEeccCC
Q 011711 407 LNDPDGNPVLICSC-N-------DDSVHLYELPSFMERGRIFSRREVRVIETGPDG--LFFTGD-GTGMLSVWKILAKP 474 (479)
Q Consensus 407 ~~~~~~~~~l~s~~-~-------dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g--~l~sg~-~dg~v~vw~~~~~~ 474 (479)
+|+++.++++.. . ++.+.++|+.+.+.+..+........++++||| ++++.. .++.|.++|+.+.+
T Consensus 272 --s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 272 --LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp --ETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred --cCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 589886666544 2 245679999999999999877789999999999 566666 59999999998754
No 237
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.82 E-value=1e-06 Score=83.30 Aligned_cols=229 Identities=13% Similarity=0.099 Sum_probs=136.6
Q ss_pred ccEEEEEeCCCCCEEEEEe--CCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCC
Q 011711 193 KAVSGIALPLRSDKLYSGS--RDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGP 270 (479)
Q Consensus 193 ~~V~~l~~s~~~~~l~s~s--~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~ 270 (479)
.....++++++|+.+++.. .++.++||.+.+++ +..+.... .....+
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~------------------------------~~~~~~ 65 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQS------------------------------GNAIIT 65 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCC------------------------------SSCCCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcc------------------------------cCcccc
Confidence 6899999999999998864 23435666654443 22111000 001235
Q ss_pred CccEEEEEEcCC-EEEEEeC------CCcEEEEEccCCCCCcccceeeec------CCCCCeEEEEEc--CCEE-EEEe-
Q 011711 271 VGEVYSMVVANE-MLFAGAQ------DGNILVWKGIPNTQNPFQLAALLK------GHTRPVTCLAVG--GKRL-YSGS- 333 (479)
Q Consensus 271 ~~~v~~~~~~~~-~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~------~h~~~i~~l~~~--~~~l-~sgs- 333 (479)
...+..++++++ .|++... ++.|.+||+.+++. ...+. .+...+..++++ +..+ ++-.
T Consensus 66 ~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~-----~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~ 140 (343)
T 2qe8_A 66 FDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQL-----SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA 140 (343)
T ss_dssp CSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEE-----EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC
T ss_pred eeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeE-----EEEEECChhhcccccccceEEEecCCCEEEEEcCc
Confidence 567899999886 5555443 57899999887642 22221 223456788887 4455 4444
Q ss_pred --CCCeEEEEECCCCcEEEEEeCCC-----------------------------CCcEEEEEc--CCEEEEEeCCC-eEE
Q 011711 334 --MDNTIRVWDLDTLEAVMTLNGHT-----------------------------DAPMSLLCW--DQYLLSCSLDN-TIK 379 (479)
Q Consensus 334 --~dg~I~iwd~~~~~~~~~~~~h~-----------------------------~~v~~~~~~--~~~l~s~s~dg-~i~ 379 (479)
.++.|.+||+.+++....+..|. ..+..++++ ++.|+.+..++ .+.
T Consensus 141 ~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~ 220 (343)
T 2qe8_A 141 PDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMY 220 (343)
T ss_dssp SGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEE
T ss_pred cCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEE
Confidence 57899999999888777665431 123456665 56777766655 444
Q ss_pred EEEcC---CCc--------ceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec--cCceE
Q 011711 380 VWIMT---EEG--------NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS--RREVR 446 (479)
Q Consensus 380 iwd~~---~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~v~ 446 (479)
.++.. ... .+. ..........+++ +++|. ++++...++.|.+||..+++....... ...+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~g~pdgia~----d~~G~-l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~ 294 (343)
T 2qe8_A 221 RIKSADLSNLQLTDAELGSKIE-RYSEKPICDGISI----DKDHN-IYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTD 294 (343)
T ss_dssp EEEHHHHTCTTCCHHHHHTTCE-EEEECCSCSCEEE----CTTCC-EEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEE
T ss_pred EEEHHHhcCCCCChhhhhcceE-ecccCCCCceEEE----CCCCC-EEEEccCCCeEEEEECCCCCEEEEEECCceecCC
Confidence 44421 100 001 1111112233444 58887 788888889999999855553322222 34589
Q ss_pred EEEECCCc-eEEEEcCCC
Q 011711 447 VIETGPDG-LFFTGDGTG 463 (479)
Q Consensus 447 ~l~~s~~g-~l~sg~~dg 463 (479)
.+++.+++ ++++.+..+
T Consensus 295 ~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 295 SFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp EEEECTTSCEEEEECCGG
T ss_pred eeEECCCCcEEEEeCccc
Confidence 99999999 667766443
No 238
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.81 E-value=6.1e-06 Score=83.56 Aligned_cols=277 Identities=14% Similarity=0.073 Sum_probs=167.4
Q ss_pred CeeEeCCCCCeEEEeecCCCceeeEEEecccccE---------EEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 011711 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAV---------SGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V---------~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~ 232 (479)
+.+..++.++.+..+|..++ +.+.++......- ..+++ .+..++.++.|+.|.-+|..+|+.+.....
T Consensus 69 g~vyv~~~~~~v~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTG-KRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TEEEEEETTTEEEEEESSSC-CEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CEEEEEcCCCCEEEEECCCC-cEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 34443433334888898888 6666665432210 11122 356788889999999999999999988776
Q ss_pred CCc-----e--eEEEeCC----C-EEEEEc-------CCeEEEEEcCCCceEEec-CCCccE------------------
Q 011711 233 GAE-----V--GSLICEG----P-WVFVGM-------PNVVKAWHIESSAEFSLD-GPVGEV------------------ 274 (479)
Q Consensus 233 ~~~-----~--~~~~~~~----~-~l~~~~-------~~~i~v~~~~~~~~~~~~-~~~~~v------------------ 274 (479)
... + ..+..++ + .++++. ++.|..+|.+++++.-.. .....+
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence 541 1 1122333 2 555543 689999999998875321 110000
Q ss_pred -----------------------EEEEEcCC--EEEEEeC--------------------C----CcEEEEEccCCCCCc
Q 011711 275 -----------------------YSMVVANE--MLFAGAQ--------------------D----GNILVWKGIPNTQNP 305 (479)
Q Consensus 275 -----------------------~~~~~~~~--~l~~g~~--------------------d----g~i~iwd~~~~~~~~ 305 (479)
..++++++ +++++.. | +.|..+|..+++.
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~-- 303 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV-- 303 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE--
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE--
Confidence 12344443 6666653 2 5799999988764
Q ss_pred ccceeee--cCC--------CCCeEEEE---EcC---CEEEEEeCCCeEEEEECCCCcEEEEEeCCCC------------
Q 011711 306 FQLAALL--KGH--------TRPVTCLA---VGG---KRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD------------ 357 (479)
Q Consensus 306 ~~~~~~~--~~h--------~~~i~~l~---~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~------------ 357 (479)
.-.+ ..| ..++. +. .++ ..++.++.+|.++++|.++++.+..+.....
T Consensus 304 ---~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g 379 (582)
T 1flg_A 304 ---KWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTG 379 (582)
T ss_dssp ---EEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTC
T ss_pred ---EEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCC
Confidence 2222 222 12333 22 235 3788899999999999999999887754320
Q ss_pred C------------------c---------------EEEEEc--CCEEEEEe-----------------------------
Q 011711 358 A------------------P---------------MSLLCW--DQYLLSCS----------------------------- 373 (479)
Q Consensus 358 ~------------------v---------------~~~~~~--~~~l~s~s----------------------------- 373 (479)
. . ..++++ ...+++..
T Consensus 380 ~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p 459 (582)
T 1flg_A 380 RPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKR 459 (582)
T ss_dssp CEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred CEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecC
Confidence 0 0 011222 12232221
Q ss_pred ----CCCeEEEEEcCCCcceEEeccccCccc-eEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEE-
Q 011711 374 ----LDNTIKVWIMTEEGNLEVAYTHNEDHG-VLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRV- 447 (479)
Q Consensus 374 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~- 447 (479)
.+|.|..||+.+++.+........... .+.. . +. +++.++.|+.++.||.++++++.++.....+.+
T Consensus 460 ~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-----a-gg-lvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~ 532 (582)
T 1flg_A 460 MYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT-----A-GN-LVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSP 532 (582)
T ss_dssp SCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEE-----T-TT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred CCCCCcceEEEEECCCCCEEEEecCCCCCcccceEe-----C-CC-EEEEECCCCcEEEEECCCCCEEEEecCCCCcccC
Confidence 368899999999887665543322111 1221 3 33 667789999999999999999999886544433
Q ss_pred -EEECCCc
Q 011711 448 -IETGPDG 454 (479)
Q Consensus 448 -l~~s~~g 454 (479)
+.+..+|
T Consensus 533 P~~y~~~G 540 (582)
T 1flg_A 533 PITWEQDG 540 (582)
T ss_dssp CEEEEETT
T ss_pred ceEEEECC
Confidence 5666777
No 239
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.81 E-value=3.4e-05 Score=81.56 Aligned_cols=300 Identities=10% Similarity=0.074 Sum_probs=179.4
Q ss_pred CeeEeCCCCCeEEEeecCCCceeeEEEec-------ccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec--
Q 011711 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEG-------HKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL-- 232 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~-------H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~-- 232 (479)
+.+..|..++-+..|+..++ +....... ....|.++...++|.+.+ |+.+ -|.+||..+++.......
T Consensus 226 g~lwigt~~~Gl~~~~~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~ 302 (795)
T 4a2l_A 226 TRIWVATEGAGLFLINPKTK-EIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPV 302 (795)
T ss_dssp TEEEEEEBSSCEEEEETTTT-EEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTT
T ss_pred CCEEEEECCCCeEEEeCCCC-eEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCC
Confidence 34444544445778887765 22221111 135799999988887554 4455 589999887765443221
Q ss_pred ------CCceeEEEe--CCCEEEEEcCCeEEEEEcCCCceEEecC-------CCccEEEEEEcCC-EEEEEeCCCcEEEE
Q 011711 233 ------GAEVGSLIC--EGPWVFVGMPNVVKAWHIESSAEFSLDG-------PVGEVYSMVVANE-MLFAGAQDGNILVW 296 (479)
Q Consensus 233 ------~~~~~~~~~--~~~~l~~~~~~~i~v~~~~~~~~~~~~~-------~~~~v~~~~~~~~-~l~~g~~dg~i~iw 296 (479)
...+.++.. +|.+.++..++.|..++..+........ ....|.++..+++ .|.+|+.++-|..|
T Consensus 303 ~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~ 382 (795)
T 4a2l_A 303 ENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLY 382 (795)
T ss_dssp STTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEE
T ss_pred CCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEE
Confidence 133555554 5667777777889999877665433221 2456999998876 88889998889999
Q ss_pred EccCCCCCccccee-ee--cCCCCCeEEEEEc-CCE-EEEEeCCCeEEEEECCCCcEEEEEe----CCCCCcEEEEEc-C
Q 011711 297 KGIPNTQNPFQLAA-LL--KGHTRPVTCLAVG-GKR-LYSGSMDNTIRVWDLDTLEAVMTLN----GHTDAPMSLLCW-D 366 (479)
Q Consensus 297 d~~~~~~~~~~~~~-~~--~~h~~~i~~l~~~-~~~-l~sgs~dg~I~iwd~~~~~~~~~~~----~h~~~v~~~~~~-~ 366 (479)
|..++....+.... .. ......|.++..+ ... |..|+.++-|..+|.++++...-.. .+...|.++..+ .
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~ 462 (795)
T 4a2l_A 383 NPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGE 462 (795)
T ss_dssp CTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSS
T ss_pred cCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCC
Confidence 97665321110000 00 1124678999886 444 8889988889999998876543221 123467888777 3
Q ss_pred CEEEEEeCCCeEEEEEcCCCcceEEeccc---cCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee---
Q 011711 367 QYLLSCSLDNTIKVWIMTEEGNLEVAYTH---NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF--- 440 (479)
Q Consensus 367 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--- 440 (479)
..|..|+.+ -+.+||..+... ...... .........++..+++|. +.+ |+. +-+..||..+.+. .+.
T Consensus 463 g~lwigt~~-Gl~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWi-gt~-~Gl~~~~~~~~~~--~~~~~~ 535 (795)
T 4a2l_A 463 GNLWLGTLS-ALVRFNPEQRSF-TTIEKEKDGTPVVSKQITTLFRDSHKR-LWI-GGE-EGLSVFKQEGLDI--QKASIL 535 (795)
T ss_dssp SCEEEEESS-CEEEEETTTTEE-EECCBCTTCCBCCCCCEEEEEECTTCC-EEE-EES-SCEEEEEEETTEE--EECCCS
T ss_pred CCEEEEecC-ceeEEeCCCCeE-EEccccccccccCCceEEEEEECCCCC-EEE-EeC-CceEEEeCCCCeE--EEecCC
Confidence 455556664 588899876532 222211 000011123334467787 333 444 4588888876654 221
Q ss_pred -----ccCceEEEEECCCceEEEEcCCCcEEEEEecc
Q 011711 441 -----SRREVRVIETGPDGLFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 441 -----~~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~ 472 (479)
....|.++...++|.|..|+.. -|..|+..+
T Consensus 536 ~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~ 571 (795)
T 4a2l_A 536 PVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKD 571 (795)
T ss_dssp CSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTT
T ss_pred CCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCC
Confidence 2457999999999944444444 467777543
No 240
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.80 E-value=2.4e-06 Score=79.21 Aligned_cols=213 Identities=12% Similarity=0.039 Sum_probs=135.9
Q ss_pred eEEEeccCC-eeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 011711 154 NVCYHWLSG-NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (479)
Q Consensus 154 ~~c~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~ 232 (479)
...+.+... .++++..++.|..|+.. + + ...+..+...+..++++++|+++++...++.|.+|+.+ ++.......
T Consensus 49 gp~~~~~g~~l~~~d~~~~~i~~~~~~-g-~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~ 124 (305)
T 3dr2_A 49 GPAWWEAQRTLVWSDLVGRRVLGWRED-G-T-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGR 124 (305)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEETT-S-C-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECE
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEeCC-C-C-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEec
Confidence 445555555 56777788999999984 4 2 45566677789999999999977666666889999986 654332221
Q ss_pred -C----Cce--eEEEeCCCEEEE----Ec--------------CCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEE
Q 011711 233 -G----AEV--GSLICEGPWVFV----GM--------------PNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLF 285 (479)
Q Consensus 233 -~----~~~--~~~~~~~~~l~~----~~--------------~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~ 285 (479)
. ... ..+.++|.+.++ +. .+.|..++..+++..... .......++++++ .|+
T Consensus 125 ~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~ly 203 (305)
T 3dr2_A 125 YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLY 203 (305)
T ss_dssp ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEE
T ss_pred cCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEE
Confidence 1 111 233347777775 21 246777777666654443 4456778999988 576
Q ss_pred EEeCC------CcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCC
Q 011711 286 AGAQD------GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD 357 (479)
Q Consensus 286 ~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~ 357 (479)
++... +.|.+|++........+.. ..........++++ |+ +++++.+ .|.+||. +++.+..+..+.
T Consensus 204 v~~~~~~~~~~~~i~~~~~~~~~l~~~~~~--~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-~g~~~~~~~~~~- 277 (305)
T 3dr2_A 204 VSQTPEQGHGSVEITAFAWRDGALHDRRHF--ASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-DGQLLGHIPTPG- 277 (305)
T ss_dssp EEECCC---CCCEEEEEEEETTEEEEEEEE--ECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT-TSCEEEEEECSS-
T ss_pred EEecCCcCCCCCEEEEEEecCCCccCCeEE--EECCCCCCCeEEECCCCC-EEEecCC-cEEEECC-CCCEEEEEECCC-
Confidence 66655 7899999875421001111 11123344567776 55 5555544 5999998 577777777655
Q ss_pred CcEEEEEc--CCEEEEEeCCCe
Q 011711 358 APMSLLCW--DQYLLSCSLDNT 377 (479)
Q Consensus 358 ~v~~~~~~--~~~l~s~s~dg~ 377 (479)
.+.++.+. ++.|+.++.++.
T Consensus 278 ~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 278 TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp CCCEEEECTTSCEEEEEETTEE
T ss_pred ceeEEEEeCCCCEEEEEcCCeE
Confidence 47777774 567777776543
No 241
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.80 E-value=6e-06 Score=77.32 Aligned_cols=215 Identities=11% Similarity=0.059 Sum_probs=128.4
Q ss_pred cEEEEEeCCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEE--eCCCEEEEEcCCeEEEEEcCCCceEEecCC
Q 011711 194 AVSGIALPLRS-DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPWVFVGMPNVVKAWHIESSAEFSLDGP 270 (479)
Q Consensus 194 ~V~~l~~s~~~-~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~ 270 (479)
-..+.+|+|++ .++++...++.|..||..+++.. .+.....+.++. .+++++++. ...|.+||..+++...+...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~~~~~~~ 127 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAEL 127 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECS
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCCeEEEEE-CCCEEEEECCCCcEEEEeeC
Confidence 34567888874 45666667889999999887643 344445555544 477777766 45699999988776443221
Q ss_pred -----CccEEEEEEcCC-EEEEEeC-------CCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEE-EeC
Q 011711 271 -----VGEVYSMVVANE-MLFAGAQ-------DGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYS-GSM 334 (479)
Q Consensus 271 -----~~~v~~~~~~~~-~l~~g~~-------dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~s-gs~ 334 (479)
...+..+.++++ .+++++. .+.|..++ ++. . ..+..+......++++ ++.++. .+.
T Consensus 128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~---~---~~~~~~~~~~~~i~~s~dg~~lyv~~~~ 199 (326)
T 2ghs_A 128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK---V---TKLFADISIPNSICFSPDGTTGYFVDTK 199 (326)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE---E---EEEEEEESSEEEEEECTTSCEEEEEETT
T ss_pred CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc---E---EEeeCCCcccCCeEEcCCCCEEEEEECC
Confidence 246889999887 4444442 24455555 322 1 1122223346688886 666544 456
Q ss_pred CCeEEEEECC--CC-c-----EEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEE
Q 011711 335 DNTIRVWDLD--TL-E-----AVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLAL 404 (479)
Q Consensus 335 dg~I~iwd~~--~~-~-----~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 404 (479)
++.|.+||+. ++ + ....+......+..+.++ +.+.++...++.|.+||. +++.+..+......+..+++
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af 278 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAF 278 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEE
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEE
Confidence 7899999986 55 3 222333233445667766 566666666789999998 45544444433323333333
Q ss_pred eeeeCCCCCcEEEEEeCC
Q 011711 405 GGLNDPDGNPVLICSCND 422 (479)
Q Consensus 405 ~~~~~~~~~~~l~s~~~d 422 (479)
. .++++.++++...+
T Consensus 279 ~---g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 279 I---GPDASRLLVTSARE 293 (326)
T ss_dssp E---STTSCEEEEEEBCT
T ss_pred e---cCCCCEEEEEecCC
Confidence 1 26776555555444
No 242
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.79 E-value=4.8e-06 Score=74.69 Aligned_cols=209 Identities=12% Similarity=0.036 Sum_probs=138.8
Q ss_pred eeeEEEecccc--cEEEEEeCCCCCEEEEEeC--CCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEE
Q 011711 183 TMLAKLEGHKK--AVSGIALPLRSDKLYSGSR--DGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWH 258 (479)
Q Consensus 183 ~~~~~~~~H~~--~V~~l~~s~~~~~l~s~s~--Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~ 258 (479)
+.+.++. |.. ....++|++++.+.++.+. ++.|++.|+.+++.+..+..+..
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~----------------------- 65 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS----------------------- 65 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-----------------------
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-----------------------
Confidence 4566663 443 3689999998755555543 57999999999998887764321
Q ss_pred cCCCceEEecCCCccEEEEEEcCCEEEEE-eCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCCCe
Q 011711 259 IESSAEFSLDGPVGEVYSMVVANEMLFAG-AQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNT 337 (479)
Q Consensus 259 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~ 337 (479)
.....+++.++.|+.+ -.++.+.++|..+.+ .+..+......-..++.+++.++++..++.
T Consensus 66 -------------~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~-----v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~ 127 (266)
T 2iwa_A 66 -------------YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLS-----NIKNFTHQMKDGWGLATDGKILYGSDGTSI 127 (266)
T ss_dssp -------------CCEEEEEEETTEEEEEETTCSEEEEEETTTTE-----EEEEEECCSSSCCEEEECSSSEEEECSSSE
T ss_pred -------------cceEEEEEeCCEEEEEEecCCEEEEEECCCCc-----EEEEEECCCCCeEEEEECCCEEEEECCCCe
Confidence 1122455666644444 467899999987653 344443221222457788777777778899
Q ss_pred EEEEECCCCcEEEEEeCCCC-----CcEEEEEcCCEEEEEe-CCCeEEEEEcCCCcceEEeccccC---------ccceE
Q 011711 338 IRVWDLDTLEAVMTLNGHTD-----APMSLLCWDQYLLSCS-LDNTIKVWIMTEEGNLEVAYTHNE---------DHGVL 402 (479)
Q Consensus 338 I~iwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~---------~~~~~ 402 (479)
|.++|..+.+.+.++..... ....+.+.+..+++.. .++.|.+.|..+++.+..+..... .....
T Consensus 128 l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v 207 (266)
T 2iwa_A 128 LYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDV 207 (266)
T ss_dssp EEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCC
T ss_pred EEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCc
Confidence 99999999999888864321 2455666655555554 578999999999887776654210 00111
Q ss_pred EEeeeeCCCCCcEEEEEeCCCeEEEeecCCC
Q 011711 403 ALGGLNDPDGNPVLICSCNDDSVHLYELPSF 433 (479)
Q Consensus 403 ~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 433 (479)
...+.++|+++.+++++...+.+...++...
T Consensus 208 ~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 208 LNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred eEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 2233346999889999988999999888654
No 243
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.78 E-value=2.5e-06 Score=75.64 Aligned_cols=181 Identities=13% Similarity=0.079 Sum_probs=126.8
Q ss_pred CccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEE-EEeCCCeEEEEECCCCcE
Q 011711 271 VGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLY-SGSMDNTIRVWDLDTLEA 348 (479)
Q Consensus 271 ~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~-sgs~dg~I~iwd~~~~~~ 348 (479)
......+.++++ ++.+.+.+|.|+++|+.+++. ...+......-..+++.++.|+ ..-.++.+.+||..+.+.
T Consensus 54 ~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv-----~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 54 NAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQP-----VWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp TCCEEEEEEETTEEEEEETTTTEEEECCSSCSSC-----SEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEE
T ss_pred ccccceEEEECCEEEEEcCCCCEEEEEECCCCcE-----EeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcE
Confidence 344578888878 566667788999999998864 2222111222244777755544 445789999999999999
Q ss_pred EEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccccCc--cceE-EEeeeeCCCCCcEEEEEeCCCeE
Q 011711 349 VMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNED--HGVL-ALGGLNDPDGNPVLICSCNDDSV 425 (479)
Q Consensus 349 ~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~l~s~~~dg~v 425 (479)
+.++... ..-..++.+++.|+.+..++.|.++|..+.+.+..+...... +..+ .+. + .+|+ +.+..-.++.|
T Consensus 129 ~~ti~~~-~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe--~-~dG~-lyanvw~s~~I 203 (268)
T 3nok_A 129 ERTTRYS-GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE--C-ANGV-IYANIWHSSDV 203 (268)
T ss_dssp EEEEECS-SCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE--E-ETTE-EEEEETTCSEE
T ss_pred EEEEeCC-CceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE--E-eCCE-EEEEECCCCeE
Confidence 9999854 334678888888888888999999999988777666543322 1111 111 1 3665 66666578899
Q ss_pred EEeecCCCceeeeeecc--------------CceEEEEECCCc--eEEEEcC
Q 011711 426 HLYELPSFMERGRIFSR--------------REVRVIETGPDG--LFFTGDG 461 (479)
Q Consensus 426 ~iwd~~~~~~~~~~~~~--------------~~v~~l~~s~~g--~l~sg~~ 461 (479)
.+.|..+++.+..+... .-.+.|+++|++ +++||-.
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 99999999998887631 357899999987 6666643
No 244
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.77 E-value=5.3e-06 Score=74.40 Aligned_cols=193 Identities=13% Similarity=0.030 Sum_probs=137.1
Q ss_pred cEEEEEEcCC-EEEEEeC---CCcEEEEEccCCCCCcccceeeec-CCCCCeEEEEEcCCEEEEEe-CCCeEEEEECCCC
Q 011711 273 EVYSMVVANE-MLFAGAQ---DGNILVWKGIPNTQNPFQLAALLK-GHTRPVTCLAVGGKRLYSGS-MDNTIRVWDLDTL 346 (479)
Q Consensus 273 ~v~~~~~~~~-~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~-~h~~~i~~l~~~~~~l~sgs-~dg~I~iwd~~~~ 346 (479)
....+.++++ .|+.++. ++.|.++|+.+++. ...+. +.......++++++.++.+. .++.+.++|..+.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v-----~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~ 96 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKV-----ENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTL 96 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCE-----EEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTT
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCE-----EEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCC
Confidence 4578889884 6665543 58999999998763 33322 12223346777766665554 6789999999999
Q ss_pred cEEEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccccC--ccc-eEEEeeeeCCCCCcEEEEEeCCC
Q 011711 347 EAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNE--DHG-VLALGGLNDPDGNPVLICSCNDD 423 (479)
Q Consensus 347 ~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~l~s~~~dg 423 (479)
+.+.++......-..+..+++.++.+..++.|.++|..+.+....+..... +.. ...+. +. +|. +.+....++
T Consensus 97 ~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele--~~-dg~-lyvn~~~~~ 172 (266)
T 2iwa_A 97 SNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELE--YI-NGE-VWANIWQTD 172 (266)
T ss_dssp EEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE--EE-TTE-EEEEETTSS
T ss_pred cEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEE--EE-CCE-EEEecCCCC
Confidence 999998643233466888887777777789999999998876666554322 111 11111 22 564 666666788
Q ss_pred eEEEeecCCCceeeeeecc--------------CceEEEEECCCc--eEEEEcCCCcEEEEEeccCC
Q 011711 424 SVHLYELPSFMERGRIFSR--------------REVRVIETGPDG--LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 424 ~v~iwd~~~~~~~~~~~~~--------------~~v~~l~~s~~g--~l~sg~~dg~v~vw~~~~~~ 474 (479)
.|.+.|..+++.+..+... .....++++|++ .++++...+.|.+-++...+
T Consensus 173 ~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 173 CIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred eEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 9999999999998888642 356899999998 78888899999999987754
No 245
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.76 E-value=7.3e-06 Score=82.94 Aligned_cols=266 Identities=14% Similarity=0.039 Sum_probs=161.8
Q ss_pred CCEEEEEeC-CCcEEEEEC-CCCceEEEEecCCce------------eE-EE--eCCC----EEEEEcCCeEEEEEcCCC
Q 011711 204 SDKLYSGSR-DGTVQLWDC-HTGQSASVINLGAEV------------GS-LI--CEGP----WVFVGMPNVVKAWHIESS 262 (479)
Q Consensus 204 ~~~l~s~s~-Dg~v~vwd~-~~~~~~~~~~~~~~~------------~~-~~--~~~~----~l~~~~~~~i~v~~~~~~ 262 (479)
+..++.++. ++.|.-+|. .+|+.+..+...... .. .. .++. +++...++.+..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 556777777 899999999 999999888765421 11 22 3445 556668899999999999
Q ss_pred ceEEecCCCc-----cEE-EEEEcCCEEEEEeC------CCcEEEEEccCCCCCcccceeeecCCC--------------
Q 011711 263 AEFSLDGPVG-----EVY-SMVVANEMLFAGAQ------DGNILVWKGIPNTQNPFQLAALLKGHT-------------- 316 (479)
Q Consensus 263 ~~~~~~~~~~-----~v~-~~~~~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~h~-------------- 316 (479)
+++-...... .+. +-.+..+.+++++. +|.|+.+|..+++.. -.+....
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~-----W~~~~~~~~~~~~~~p~~~~~ 216 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQV-----WRAYATGPDKDLLLASDFNIK 216 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEE-----EEEESSSCHHHHTBCTTTTTT
T ss_pred CEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEE-----EEEcCCCCccccccccccccc
Confidence 8753211110 111 12234567777663 899999999887631 1111100
Q ss_pred -----------------------CCe-EEEEE--cCCEEEEEeCC----------------CeEEEEECCCCcEEEEEeC
Q 011711 317 -----------------------RPV-TCLAV--GGKRLYSGSMD----------------NTIRVWDLDTLEAVMTLNG 354 (479)
Q Consensus 317 -----------------------~~i-~~l~~--~~~~l~sgs~d----------------g~I~iwd~~~~~~~~~~~~ 354 (479)
..+ ..+++ ..+.++.++.+ +.|..+|.++++.+..++.
T Consensus 217 ~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~ 296 (599)
T 1w6s_A 217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQK 296 (599)
T ss_dssp CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEES
T ss_pred cccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeec
Confidence 001 12334 36677777665 3899999999999988874
Q ss_pred CCC---------CcEEEE---EcC---CEEEEEeCCCeEEEEEcCCCcceEEeccccC---------ccce---------
Q 011711 355 HTD---------APMSLL---CWD---QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNE---------DHGV--------- 401 (479)
Q Consensus 355 h~~---------~v~~~~---~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---------~~~~--------- 401 (479)
... ...-+. ..+ ..++.++.+|.+.++|.++++.+........ ....
T Consensus 297 ~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~ 376 (599)
T 1w6s_A 297 TPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGT 376 (599)
T ss_dssp STTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCC
T ss_pred CCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCC
Confidence 321 111122 235 4677789999999999999887655432110 0000
Q ss_pred ------EEE-----------eeeeCCCCCcEEEE-----------------------------E---e------CCCeEE
Q 011711 402 ------LAL-----------GGLNDPDGNPVLIC-----------------------------S---C------NDDSVH 426 (479)
Q Consensus 402 ------~~~-----------~~~~~~~~~~~l~s-----------------------------~---~------~dg~v~ 426 (479)
..+ ...++|+...+++. . + .+|.|.
T Consensus 377 ~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~ 456 (599)
T 1w6s_A 377 RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIK 456 (599)
T ss_dssp CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEE
T ss_pred CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEE
Confidence 000 01123433311111 0 1 357899
Q ss_pred EeecCCCceeeeeeccCceEEE-EECCCceEEEEcCCCcEEEEEeccCC
Q 011711 427 LYELPSFMERGRIFSRREVRVI-ETGPDGLFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 427 iwd~~~~~~~~~~~~~~~v~~l-~~s~~g~l~sg~~dg~v~vw~~~~~~ 474 (479)
-||+.+++.+.+.....+...- .....++++.++.||.|+.||..+++
T Consensus 457 A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~ 505 (599)
T 1w6s_A 457 AYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGD 505 (599)
T ss_dssp EECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred EEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCC
Confidence 9999999998887654333221 12234577789999999999988765
No 246
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.75 E-value=9.8e-06 Score=82.03 Aligned_cols=266 Identities=10% Similarity=-0.015 Sum_probs=159.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEecCCce----------eE-EEeCCCEEEEEcCCeEEEEEcCCCceEEe-cCCC
Q 011711 204 SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV----------GS-LICEGPWVFVGMPNVVKAWHIESSAEFSL-DGPV 271 (479)
Q Consensus 204 ~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~----------~~-~~~~~~~l~~~~~~~i~v~~~~~~~~~~~-~~~~ 271 (479)
+..++.++.++.|.-+|..+|+.+..+...... .. ...++.+++...++.+..+|..+++..-. ....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~ 147 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFAD 147 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECSC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecCCC
Confidence 445666666445999999999999888765432 11 22455566666899999999999987522 1111
Q ss_pred ----ccEE-EEEEcCC------EEEEEeC------CCcEEEEEccCCCCCcccceeeecCCC------------------
Q 011711 272 ----GEVY-SMVVANE------MLFAGAQ------DGNILVWKGIPNTQNPFQLAALLKGHT------------------ 316 (479)
Q Consensus 272 ----~~v~-~~~~~~~------~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~h~------------------ 316 (479)
..+. +-.+..+ .+++++. +|.|+.+|..+++.. + ......
T Consensus 148 ~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~-W----~~~~~~~~~~p~~~~~~~~~g~~g 222 (582)
T 1flg_A 148 HGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEI-W----MRPFVEGHMGRLNGKDSTVTGDVK 222 (582)
T ss_dssp GGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEE-E----EEESSTTCEEEETTEEEEESSCTT
T ss_pred CCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEE-e----ecCCCccccccccCcccccccccc
Confidence 0111 1112233 6666653 789999998887532 1 111000
Q ss_pred ----------------------CCe-EEEEEc--CCEEEEEeC--------------------C----CeEEEEECCCCc
Q 011711 317 ----------------------RPV-TCLAVG--GKRLYSGSM--------------------D----NTIRVWDLDTLE 347 (479)
Q Consensus 317 ----------------------~~i-~~l~~~--~~~l~sgs~--------------------d----g~I~iwd~~~~~ 347 (479)
..+ ..++++ .+.++.+.. | +.|..+|.++++
T Consensus 223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~ 302 (582)
T 1flg_A 223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGE 302 (582)
T ss_dssp CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCC
T ss_pred cccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCC
Confidence 000 123443 567776653 2 689999999999
Q ss_pred EEEEEeC--CCC-------CcEEEE---EcC---CEEEEEeCCCeEEEEEcCCCcceEEeccccC---------------
Q 011711 348 AVMTLNG--HTD-------APMSLL---CWD---QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNE--------------- 397 (479)
Q Consensus 348 ~~~~~~~--h~~-------~v~~~~---~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--------------- 397 (479)
.+..++. |.. ...-+. ..+ ..++.++.+|.++++|.++++.+........
T Consensus 303 ~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~ 382 (582)
T 1flg_A 303 VKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPV 382 (582)
T ss_dssp EEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEE
T ss_pred EEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEe
Confidence 9998863 321 112222 235 3788899999999999999887655433210
Q ss_pred ---------------ccceEEE-----------eeeeCCCCCcEEEEEe-------------------------------
Q 011711 398 ---------------DHGVLAL-----------GGLNDPDGNPVLICSC------------------------------- 420 (479)
Q Consensus 398 ---------------~~~~~~~-----------~~~~~~~~~~~l~s~~------------------------------- 420 (479)
....... ...++|+...+++...
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~ 462 (582)
T 1flg_A 383 EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYD 462 (582)
T ss_dssp ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCS
T ss_pred EccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCC
Confidence 0000000 0122444442333221
Q ss_pred -CCCeEEEeecCCCceeeeeeccCceEEEE-ECCCceEEEEcCCCcEEEEEeccCC
Q 011711 421 -NDDSVHLYELPSFMERGRIFSRREVRVIE-TGPDGLFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 421 -~dg~v~iwd~~~~~~~~~~~~~~~v~~l~-~s~~g~l~sg~~dg~v~vw~~~~~~ 474 (479)
.+|.|.-||+.+++.+.+.....++..-. ...+++++.|+.||.++.||..+++
T Consensus 463 ~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~ 518 (582)
T 1flg_A 463 DHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp SCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCC
Confidence 36889999999999988877644333211 1235588889999999999988765
No 247
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.73 E-value=5.9e-05 Score=79.55 Aligned_cols=301 Identities=11% Similarity=0.044 Sum_probs=178.6
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEE--------------ecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCce
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKL--------------EGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS 226 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~--------------~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~ 226 (479)
.+.+..|...+-|.+++..+. ...... .-....|.++...++|. |..|+.++-|..++..++..
T Consensus 268 ~g~lWigt~~~Gl~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~ 345 (781)
T 3v9f_A 268 DNKLWIATELNGIMILDLQQN-QFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTF 345 (781)
T ss_dssp TSEEEEEESSSCEEEEETTCC----------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSC
T ss_pred CCCEEEEeCCCCeEEECCCCC-eeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcc
Confidence 345555555455677777654 211111 01346799999988776 66777777799999876654
Q ss_pred EEEEe----------cCCceeEEEe--CCCEEEEEcCCeEEEEEcCCCceEEe----cCCCccEEEEEEcCC-EEEEEeC
Q 011711 227 ASVIN----------LGAEVGSLIC--EGPWVFVGMPNVVKAWHIESSAEFSL----DGPVGEVYSMVVANE-MLFAGAQ 289 (479)
Q Consensus 227 ~~~~~----------~~~~~~~~~~--~~~~l~~~~~~~i~v~~~~~~~~~~~----~~~~~~v~~~~~~~~-~l~~g~~ 289 (479)
..... ....+.++.. ++.+.++..++.+..++..++..... ......|.++...++ .|.+|+.
T Consensus 346 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~ 425 (781)
T 3v9f_A 346 HTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTY 425 (781)
T ss_dssp EEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEET
T ss_pred eeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEec
Confidence 33211 1233556655 35666666677788899876543322 223467899988755 7888888
Q ss_pred CCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc-CCEEEEEeCCCeEEEEECCCCcEEEEEeCC-----CCCcEEEE
Q 011711 290 DGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGH-----TDAPMSLL 363 (479)
Q Consensus 290 dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h-----~~~v~~~~ 363 (479)
++-+..+|..++.. +...........|.++..+ ...+..|+. +-|..+|..+++........ ...|.++.
T Consensus 426 ~~Gl~~~~~~~~~~---~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 501 (781)
T 3v9f_A 426 LGNISYYNTRLKKF---QIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIA 501 (781)
T ss_dssp TEEEEEECSSSCEE---EECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEE
T ss_pred cCCEEEEcCCCCcE---EEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEE
Confidence 77898998765431 1111001234678999887 667777877 56899998887654333222 35677887
Q ss_pred Ec-CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee--
Q 011711 364 CW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-- 440 (479)
Q Consensus 364 ~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-- 440 (479)
.+ ...|..|+.++-+..||..+.. ...+.....-......++..+++|. + ..++.+|.|..||..+.+...--.
T Consensus 502 ~d~~g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~-l-Wi~T~~Glv~~~d~~~~~~~~~~~~~ 578 (781)
T 3v9f_A 502 QDSEGRFWIGTFGGGVGIYTPDMQL-VRKFNQYEGFCSNTINQIYRSSKGQ-M-WLATGEGLVCFPSARNFDYQVFQRKE 578 (781)
T ss_dssp ECTTCCEEEEESSSCEEEECTTCCE-EEEECTTTTCSCSCEEEEEECTTSC-E-EEEETTEEEEESCTTTCCCEEECGGG
T ss_pred EcCCCCEEEEEcCCCEEEEeCCCCe-EEEccCCCCCCCCeeEEEEECCCCC-E-EEEECCCceEEECCCCCcEEEccccC
Confidence 77 4456666764457788876543 2222221111111223334467777 3 334456665889887654322111
Q ss_pred --ccCceEEEEECCCceEEEEcCCCcEEEEEec
Q 011711 441 --SRREVRVIETGPDGLFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 441 --~~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~ 471 (479)
....|.++...++|.|..++.+| |..++..
T Consensus 579 gl~~~~i~~i~~d~~g~lW~~t~~G-l~~~~~~ 610 (781)
T 3v9f_A 579 GLPNTHIRAISEDKNGNIWASTNTG-ISCYITS 610 (781)
T ss_dssp TCSCCCCCEEEECSSSCEEEECSSC-EEEEETT
T ss_pred CCCCceEEEEEECCCCCEEEEcCCc-eEEEECC
Confidence 13568899999999555556666 5555544
No 248
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.70 E-value=8.2e-05 Score=78.49 Aligned_cols=301 Identities=11% Similarity=0.024 Sum_probs=177.6
Q ss_pred CeeEeCCCCCeEEEeecCCCceeeEEEe-------cccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEe---
Q 011711 162 GNCVKGDECRFWHSWFCGEGFTMLAKLE-------GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN--- 231 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~-------~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~--- 231 (479)
+.+..|... -+.+||..++ +...... .....|.++...++|. |..|+..+-|.++|..+++......
T Consensus 222 g~lwigt~~-Gl~~~d~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f 298 (781)
T 3v9f_A 222 GNIWIGTSK-GLALFNANTE-TFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRF 298 (781)
T ss_dssp CCEEEEETT-EEEEEETTTT-EEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------C
T ss_pred CCEEEEeCC-cHheECCCCC-cEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeecccc
Confidence 344444444 5788887665 2221111 1245699999887776 5556664568889988765433221
Q ss_pred ------------cCCceeEEEe--CCCEEEEEcCCeEEEEEcCCCceEEec----------CCCccEEEEEEcCC-EEEE
Q 011711 232 ------------LGAEVGSLIC--EGPWVFVGMPNVVKAWHIESSAEFSLD----------GPVGEVYSMVVANE-MLFA 286 (479)
Q Consensus 232 ------------~~~~~~~~~~--~~~~l~~~~~~~i~v~~~~~~~~~~~~----------~~~~~v~~~~~~~~-~l~~ 286 (479)
....+.++.. ++.+-++..++.|..++..+....... .....|.++..+++ .|.+
T Consensus 299 ~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi 378 (781)
T 3v9f_A 299 EFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWI 378 (781)
T ss_dssp EEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEE
T ss_pred ccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEE
Confidence 1123555554 456666666888889988766543321 12356999998875 8888
Q ss_pred EeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc-CCEEEEEeCCCeEEEEECCCCcEEEEEe---CCCCCcEEE
Q 011711 287 GAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLN---GHTDAPMSL 362 (479)
Q Consensus 287 g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~---~h~~~v~~~ 362 (479)
|+.++-|..||..++....+ ..........|.++..+ ...|..|+.++-|..+|.++++.. .+. .....|.++
T Consensus 379 gt~~~Gl~~~~~~~~~~~~~--~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i 455 (781)
T 3v9f_A 379 GTDGGGINVFENGKRVAIYN--KENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVF 455 (781)
T ss_dssp EEBSSCEEEEETTEEEEECC-------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEE
T ss_pred EeCCCcEEEEECCCCeEEEc--cCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEE
Confidence 88777899999765421101 00012234678899887 667778888888999998876543 332 134567888
Q ss_pred EEc-CCEEEEEeCCCeEEEEEcCCCcceEEeccccC-ccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee
Q 011711 363 LCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNE-DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF 440 (479)
Q Consensus 363 ~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 440 (479)
..+ ...|..++. +-|..||..+............ .......++..+++|. |..|+.++-+..||..+.+.. .+.
T Consensus 456 ~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~-~~~ 531 (781)
T 3v9f_A 456 YEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR--FWIGTFGGGVGIYTPDMQLVR-KFN 531 (781)
T ss_dssp EECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC--EEEEESSSCEEEECTTCCEEE-EEC
T ss_pred EECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC--EEEEEcCCCEEEEeCCCCeEE-Ecc
Confidence 777 556777776 5688999876543332221100 0011222334467787 344555445777887665432 222
Q ss_pred -----ccCceEEEEECCCceEEEEcCCCcEEEEEecc
Q 011711 441 -----SRREVRVIETGPDGLFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 441 -----~~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~ 472 (479)
....|.++...++|.|..|+.+|.|..|+..+
T Consensus 532 ~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~ 568 (781)
T 3v9f_A 532 QYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARN 568 (781)
T ss_dssp TTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTT
T ss_pred CCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCC
Confidence 14568999999999444444566547776544
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.67 E-value=7.3e-06 Score=72.64 Aligned_cols=185 Identities=12% Similarity=0.070 Sum_probs=127.0
Q ss_pred eeeEEEecccc--cEEEEEeCCCCCEEEEEeCCC--cEEEEECCCCceEEEEecCCce--eEEEeCCCEEEEE--cCCeE
Q 011711 183 TMLAKLEGHKK--AVSGIALPLRSDKLYSGSRDG--TVQLWDCHTGQSASVINLGAEV--GSLICEGPWVFVG--MPNVV 254 (479)
Q Consensus 183 ~~~~~~~~H~~--~V~~l~~s~~~~~l~s~s~Dg--~v~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~--~~~~i 254 (479)
+.++++ .|.. -...|.|+ ++.+..+.+.+| .|+++|+++++.+..+...... ..+...+..++.. .++.+
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE
Confidence 556666 3543 35788998 677777777776 9999999999999999887654 3356666666554 58999
Q ss_pred EEEEcCCCceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecC----CC-CCeEEEEEcCCEE
Q 011711 255 KAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKG----HT-RPVTCLAVGGKRL 329 (479)
Q Consensus 255 ~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~----h~-~~i~~l~~~~~~l 329 (479)
.++|.++.+.+........=..++...+.|+....++.|.++|..+.+. ...+.- .. ..++.+.+.+..+
T Consensus 110 ~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v-----~~~I~V~~~g~~~~~lNELe~~~G~l 184 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTP-----VRTITVTAHGEELPELNELEWVDGEI 184 (262)
T ss_dssp EEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSE-----EEEEECEETTEECCCEEEEEEETTEE
T ss_pred EEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeE-----EEEEEeccCCccccccceeEEECCEE
Confidence 9999999887643333333356677777777776788899999887543 333222 11 3345566654445
Q ss_pred EEEe-CCCeEEEEECCCCcEEEEEeCC------------CCCcEEEEEc--CCEEEEEeC
Q 011711 330 YSGS-MDNTIRVWDLDTLEAVMTLNGH------------TDAPMSLLCW--DQYLLSCSL 374 (479)
Q Consensus 330 ~sgs-~dg~I~iwd~~~~~~~~~~~~h------------~~~v~~~~~~--~~~l~s~s~ 374 (479)
++.. .+..|.+.|.++++.+..+... ......++++ ++.|+..+.
T Consensus 185 yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 5444 6889999999999999988642 1234678887 455555554
No 250
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.62 E-value=8.7e-05 Score=67.06 Aligned_cols=192 Identities=9% Similarity=0.035 Sum_probs=115.3
Q ss_pred ccEEEEEEcCC--EEE-EEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEE-EeCCCeEEEEECCC
Q 011711 272 GEVYSMVVANE--MLF-AGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYS-GSMDNTIRVWDLDT 345 (479)
Q Consensus 272 ~~v~~~~~~~~--~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~s-gs~dg~I~iwd~~~ 345 (479)
.....++++++ .|+ +-..++.|..++...... .............++++ ++.++. -...+.|.+++++.
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-----~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g 110 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-----TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG 110 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-----EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-----EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC
Confidence 35678888864 444 445578999999876432 12222223466788886 455554 45578999999875
Q ss_pred CcEEEEEeCCCCCcEEEEEc--CCEEEEEeC---CCeEEEEEcCCCcceEEec-cccCccceEEEeeeeCCCCCcEEEEE
Q 011711 346 LEAVMTLNGHTDAPMSLLCW--DQYLLSCSL---DNTIKVWIMTEEGNLEVAY-THNEDHGVLALGGLNDPDGNPVLICS 419 (479)
Q Consensus 346 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~---dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~ 419 (479)
................++++ +..|+.+.. .+.|..++++... ...+. ........++ +++++..++++-
T Consensus 111 ~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia----~d~~~~~lyv~d 185 (267)
T 1npe_A 111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLT----FDAFSSQLCWVD 185 (267)
T ss_dssp CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEE----EETTTTEEEEEE
T ss_pred CCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEE----EcCCCCEEEEEE
Confidence 43322232222456777776 466655554 3688888876433 22222 1111122233 358777677777
Q ss_pred eCCCeEEEeecCCCceeeeeeccCceEEEEECCCceEEEEcCCCcEEEEEeccC
Q 011711 420 CNDDSVHLYELPSFMERGRIFSRREVRVIETGPDGLFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 420 ~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~~ 473 (479)
...+.|.++|..................++...+.++++...++.|.+++..++
T Consensus 186 ~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g 239 (267)
T 1npe_A 186 AGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAIS 239 (267)
T ss_dssp TTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTT
T ss_pred CCCCEEEEEecCCCceEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCC
Confidence 778899999997654433333334456777653226666667789998887654
No 251
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.61 E-value=1.3e-05 Score=71.09 Aligned_cols=179 Identities=14% Similarity=0.065 Sum_probs=123.7
Q ss_pred ccEEEEEEcCC-EEEEEeCCC--cEEEEEccCCCCCcccceeeecCCCC-CeEEEEEcCCEEEEEe-CCCeEEEEECCCC
Q 011711 272 GEVYSMVVANE-MLFAGAQDG--NILVWKGIPNTQNPFQLAALLKGHTR-PVTCLAVGGKRLYSGS-MDNTIRVWDLDTL 346 (479)
Q Consensus 272 ~~v~~~~~~~~-~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~h~~-~i~~l~~~~~~l~sgs-~dg~I~iwd~~~~ 346 (479)
.....+.++++ ++.+.+.+| .|+++|+.+++. ...+..... .-..+++.++.|+... .++.+.+||..+.
T Consensus 43 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv-----~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~ 117 (262)
T 3nol_A 43 AFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKT-----LQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNL 117 (262)
T ss_dssp CEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCE-----EEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTC
T ss_pred cccceEEEECCEEEEECCCCCCceEEEEECCCCcE-----EEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccC
Confidence 34577888866 445555555 899999998763 333332222 2245677766666554 5889999999999
Q ss_pred cEEEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEecccc--Cccc---eEEEeeeeCCCCCcEEEEEeC
Q 011711 347 EAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHN--EDHG---VLALGGLNDPDGNPVLICSCN 421 (479)
Q Consensus 347 ~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~l~s~~~ 421 (479)
+.+.++.... .-..++.+++.|+.+..++.|.++|..+.+.+..+.... .+.. .+.+ .+|+ +.+..-.
T Consensus 118 ~~~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~-----~~G~-lyan~w~ 190 (262)
T 3nol_A 118 RQVRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEW-----VDGE-IFANVWQ 190 (262)
T ss_dssp CEEEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE-----ETTE-EEEEETT
T ss_pred cEEEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEE-----ECCE-EEEEEcc
Confidence 9999998643 346777888777777778899999999887776655432 1212 1222 3665 6666667
Q ss_pred CCeEEEeecCCCceeeeeecc-------------CceEEEEECCCc--eEEEEcCC
Q 011711 422 DDSVHLYELPSFMERGRIFSR-------------REVRVIETGPDG--LFFTGDGT 462 (479)
Q Consensus 422 dg~v~iwd~~~~~~~~~~~~~-------------~~v~~l~~s~~g--~l~sg~~d 462 (479)
++.|.+.|..+++.+..+... ...+.++++|++ +++||-.=
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W 246 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW 246 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC
Confidence 889999999999998887641 346899999987 55565443
No 252
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.58 E-value=1.1e-05 Score=71.62 Aligned_cols=182 Identities=10% Similarity=0.087 Sum_probs=124.1
Q ss_pred eeeEEEeccc--ccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCce--eEEEeCCCEEEEE--cCCeEEE
Q 011711 183 TMLAKLEGHK--KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV--GSLICEGPWVFVG--MPNVVKA 256 (479)
Q Consensus 183 ~~~~~~~~H~--~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~--~~~~i~v 256 (479)
+.+.++ .|. .-...|.|+ ++.+.++.+.+|.|+++|+++++.+..+ ..... ..+...+..++.. .++.+.+
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V 120 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFT 120 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEE
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEE
Confidence 345555 343 335788887 4677778888899999999999999888 66553 2356665555544 5899999
Q ss_pred EEcCCCceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecC--CC---CCeEEEEEcCCEEEE
Q 011711 257 WHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKG--HT---RPVTCLAVGGKRLYS 331 (479)
Q Consensus 257 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~--h~---~~i~~l~~~~~~l~s 331 (479)
||.++.+.+........-..++...+.|+++..++.|.++|..+.+. ...+.- +. ..++.+.+.+..+++
T Consensus 121 ~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v-----~~~I~V~~~g~~v~~lNeLe~~dG~lya 195 (268)
T 3nok_A 121 WSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFAL-----VGAVQVKLRGQPVELINELECANGVIYA 195 (268)
T ss_dssp EETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCE-----EEEEECEETTEECCCEEEEEEETTEEEE
T ss_pred EECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeE-----EEEEEeCCCCcccccccccEEeCCEEEE
Confidence 99999887643333344467777788787777899999999877543 333222 22 244667775334555
Q ss_pred Ee-CCCeEEEEECCCCcEEEEEeCC-------------CCCcEEEEEc--CC-EEEEE
Q 011711 332 GS-MDNTIRVWDLDTLEAVMTLNGH-------------TDAPMSLLCW--DQ-YLLSC 372 (479)
Q Consensus 332 gs-~dg~I~iwd~~~~~~~~~~~~h-------------~~~v~~~~~~--~~-~l~s~ 372 (479)
.. .+..|.+.|.++++.+..+... .+....++++ ++ ++++|
T Consensus 196 nvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 196 NIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 44 6889999999999999888632 1235778887 33 44444
No 253
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.56 E-value=7.3e-05 Score=65.64 Aligned_cols=185 Identities=13% Similarity=-0.016 Sum_probs=125.3
Q ss_pred CCccEEEEEEcCCEEEEE-eCC--CcEEEEEccCCCCCcccceeeecCCCC-CeEEEEEcCCEEEE-EeCCCeEEEEECC
Q 011711 270 PVGEVYSMVVANEMLFAG-AQD--GNILVWKGIPNTQNPFQLAALLKGHTR-PVTCLAVGGKRLYS-GSMDNTIRVWDLD 344 (479)
Q Consensus 270 ~~~~v~~~~~~~~~l~~g-~~d--g~i~iwd~~~~~~~~~~~~~~~~~h~~-~i~~l~~~~~~l~s-gs~dg~I~iwd~~ 344 (479)
.......+.|+++.|+.+ +.+ ..|+.+|+.+++. ......... .-..+++.++.|+. .-.++.+.+||.+
T Consensus 19 ~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv-----~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 19 TTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRI-----LQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp TTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCE-----EEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred CccccccEEEECCEEEEECCCCCCceEEEEECCCCCE-----EEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECC
Confidence 345577899998855444 443 4899999998753 333322221 22346666555554 4578999999999
Q ss_pred CCcEEEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccccC--ccceE-EEeeeeCCCCCcEEEEEeC
Q 011711 345 TLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNE--DHGVL-ALGGLNDPDGNPVLICSCN 421 (479)
Q Consensus 345 ~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~l~s~~~ 421 (479)
+.+.+.++.... .-..++.+++.|+.+..++.|.++|..+.+.+..+..... ++..+ .+. + .+|+ +.+..-.
T Consensus 94 tl~~~~ti~~~~-~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe--~-~~G~-lyanvw~ 168 (243)
T 3mbr_X 94 TLTPRARFRYPG-EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE--W-VNGE-LLANVWL 168 (243)
T ss_dssp TTEEEEEEECSS-CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE--E-ETTE-EEEEETT
T ss_pred cCcEEEEEeCCC-CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeE--E-eCCE-EEEEECC
Confidence 999999998543 3467888877777777789999999998877666554322 11111 111 1 3565 6665556
Q ss_pred CCeEEEeecCCCceeeeeec--------------cCceEEEEECCCc--eEEEEcCCCc
Q 011711 422 DDSVHLYELPSFMERGRIFS--------------RREVRVIETGPDG--LFFTGDGTGM 464 (479)
Q Consensus 422 dg~v~iwd~~~~~~~~~~~~--------------~~~v~~l~~s~~g--~l~sg~~dg~ 464 (479)
+..|.+.|..+++.+..+.. ..-.+.++++|++ +++||-.=-.
T Consensus 169 s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~ 227 (243)
T 3mbr_X 169 TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPM 227 (243)
T ss_dssp TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSE
T ss_pred CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCc
Confidence 88999999999999888762 1356899999987 6666654443
No 254
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.55 E-value=3.5e-05 Score=67.69 Aligned_cols=185 Identities=12% Similarity=0.045 Sum_probs=126.2
Q ss_pred eeeEEEeccc--ccEEEEEeCCCCCEEEEEeCCC--cEEEEECCCCceEEEEecCCce--eEEEeCCCEEEEE--cCCeE
Q 011711 183 TMLAKLEGHK--KAVSGIALPLRSDKLYSGSRDG--TVQLWDCHTGQSASVINLGAEV--GSLICEGPWVFVG--MPNVV 254 (479)
Q Consensus 183 ~~~~~~~~H~--~~V~~l~~s~~~~~l~s~s~Dg--~v~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~--~~~~i 254 (479)
+.+.++ .|. .-...+.|+. +.+..+.+.+| .|+++|+++++.+..+...... ..+...+..++.. .++.+
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEE
Confidence 556666 454 3467899976 56666666654 8999999999999999877654 3345556655544 58999
Q ss_pred EEEEcCCCceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecC--CC---CCeEEEEEcCCEE
Q 011711 255 KAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKG--HT---RPVTCLAVGGKRL 329 (479)
Q Consensus 255 ~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~--h~---~~i~~l~~~~~~l 329 (479)
.++|..+.+.+........=..++...+.|+++..++.|.++|..+.+. ...+.- +. ..++.+.+.+..+
T Consensus 88 ~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~-----~~~I~V~~~g~~~~~lNeLe~~~G~l 162 (243)
T 3mbr_X 88 FVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQ-----VGSIKVTAGGRPLDNLNELEWVNGEL 162 (243)
T ss_dssp EEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCE-----EEEEECEETTEECCCEEEEEEETTEE
T ss_pred EEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeE-----EEEEEEccCCcccccceeeEEeCCEE
Confidence 9999999887643333334467777777777777789999999877543 333322 21 3456677764445
Q ss_pred EEEe-CCCeEEEEECCCCcEEEEEeCC------------C-CCcEEEEEc--CCEEEEEeC
Q 011711 330 YSGS-MDNTIRVWDLDTLEAVMTLNGH------------T-DAPMSLLCW--DQYLLSCSL 374 (479)
Q Consensus 330 ~sgs-~dg~I~iwd~~~~~~~~~~~~h------------~-~~v~~~~~~--~~~l~s~s~ 374 (479)
++.. .+..|.+.|.++++.+..+... . +....++++ ++.|+..+.
T Consensus 163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 5544 6889999999999999988622 1 234678887 455555443
No 255
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.49 E-value=0.00038 Score=62.74 Aligned_cols=234 Identities=14% Similarity=0.071 Sum_probs=135.7
Q ss_pred CeEEEeecCCCcee----eEEEecccccEEEEEeCCCCCEEEEE-eCCCcEEEEECCCCceEEEEecCCceeEEEeCCCE
Q 011711 171 RFWHSWFCGEGFTM----LAKLEGHKKAVSGIALPLRSDKLYSG-SRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPW 245 (479)
Q Consensus 171 ~~i~vw~~~~~~~~----~~~~~~H~~~V~~l~~s~~~~~l~s~-s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (479)
+.|+.++++..... ...+......+..++|++++..|+.+ ..++.|..+++..+.....+.
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-------------- 75 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR-------------- 75 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC--------------
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE--------------
Confidence 46777777654210 11222234567899999876655544 456789999887554322111
Q ss_pred EEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEE-EeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEE
Q 011711 246 VFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFA-GAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCL 322 (479)
Q Consensus 246 l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~-g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l 322 (479)
........++++++ .++. -..++.|.++++..... .............+
T Consensus 76 -----------------------~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-----~~~~~~~~~~P~~i 127 (267)
T 1npe_A 76 -----------------------QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-----RVLFDTGLVNPRGI 127 (267)
T ss_dssp -----------------------TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEECSSCSSEEEE
T ss_pred -----------------------CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-----EEEEECCCCCccEE
Confidence 11234567777753 4444 44567899998765321 11112122345788
Q ss_pred EEc--CCEEEEEeC---CCeEEEEECCCCcEEEEEe-CCCCCcEEEEEc--CCEEE-EEeCCCeEEEEEcCCCcceEEec
Q 011711 323 AVG--GKRLYSGSM---DNTIRVWDLDTLEAVMTLN-GHTDAPMSLLCW--DQYLL-SCSLDNTIKVWIMTEEGNLEVAY 393 (479)
Q Consensus 323 ~~~--~~~l~sgs~---dg~I~iwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~-s~s~dg~i~iwd~~~~~~~~~~~ 393 (479)
+++ +..|+.+.. .+.|..++++... ...+. ........++++ ++.|+ +-...+.|.++|...........
T Consensus 128 ~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~ 206 (267)
T 1npe_A 128 VTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE 206 (267)
T ss_dssp EEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE
T ss_pred EEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec
Confidence 886 566665554 3689888886433 23332 223346677776 45555 44556899999987543222222
Q ss_pred cccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccC--ceEEEEECCCc
Q 011711 394 THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRR--EVRVIETGPDG 454 (479)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~v~~l~~s~~g 454 (479)
.... ...+. +++..++++...++.|..+|..+++.+..+.... ....+++.|++
T Consensus 207 ~~~~---P~gi~----~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 207 GLQY---PFAVT----SYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp CCCS---EEEEE----EETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred CCCC---ceEEE----EeCCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 1111 12222 2344466666677899999999998887776432 46777777765
No 256
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.43 E-value=2.8e-05 Score=74.41 Aligned_cols=189 Identities=17% Similarity=0.200 Sum_probs=118.1
Q ss_pred EEEEEeCCCcEEEEEccCCCCCcccceeeec--------CCCCCeEEEEEc-CCEEEEEeCC------CeEEEEECCCCc
Q 011711 283 MLFAGAQDGNILVWKGIPNTQNPFQLAALLK--------GHTRPVTCLAVG-GKRLYSGSMD------NTIRVWDLDTLE 347 (479)
Q Consensus 283 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~--------~h~~~i~~l~~~-~~~l~sgs~d------g~I~iwd~~~~~ 347 (479)
+++.+..++.|+++|+.+.... .++...++ +.. .-..+... +..++++..+ |.|.++|..+++
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~-p~~~k~ie~~~~~~~~g~s-~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~ 175 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPRE-PKIIKVIEPEEVKKVSGYS-RLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFE 175 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTS-CEEEEEECHHHHHHHHCEE-EEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCC
T ss_pred EEEccCCCCeEEEEECCCCCCC-ceeeeeechhhcccccCCC-cccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCe
Confidence 5666778899999998765332 23333332 111 12223332 2266665544 789999999999
Q ss_pred EEEEEeCCCCC---cEEEEE--cCCEEEEEe-------------------CCCeEEEEEcCCCcceEEeccccCccceEE
Q 011711 348 AVMTLNGHTDA---PMSLLC--WDQYLLSCS-------------------LDNTIKVWIMTEEGNLEVAYTHNEDHGVLA 403 (479)
Q Consensus 348 ~~~~~~~h~~~---v~~~~~--~~~~l~s~s-------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 403 (479)
.+.++...... -..+.+ .++.+++.. .+.+|.+||+.+.+.+..+...........
T Consensus 176 v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~ 255 (462)
T 2ece_A 176 PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALE 255 (462)
T ss_dssp EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEE
T ss_pred EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccce
Confidence 99998733222 223433 367777774 378999999998765555444322223334
Q ss_pred EeeeeCCCCCcEEEEEe-----CCCeEEEeecCCCcee--eee--ec-----------------cCceEEEEECCCc--e
Q 011711 404 LGGLNDPDGNPVLICSC-----NDDSVHLYELPSFMER--GRI--FS-----------------RREVRVIETGPDG--L 455 (479)
Q Consensus 404 ~~~~~~~~~~~~l~s~~-----~dg~v~iwd~~~~~~~--~~~--~~-----------------~~~v~~l~~s~~g--~ 455 (479)
+.+.++|+++..+++.- .+++|.+|..+.++.. ..+ .. ......+.++||| +
T Consensus 256 i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfL 335 (462)
T 2ece_A 256 LRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFL 335 (462)
T ss_dssp EEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEE
T ss_pred eEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEE
Confidence 44556899996666666 7788877665443211 110 00 2457899999999 5
Q ss_pred EEEEcCCCcEEEEEeccC
Q 011711 456 FFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 456 l~sg~~dg~v~vw~~~~~ 473 (479)
+++.-..+.|.+||+...
T Consensus 336 YVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 336 YLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp EEEETTTTEEEEEECSST
T ss_pred EEEeCCCCEEEEEEecCC
Confidence 566666899999999743
No 257
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.42 E-value=0.00091 Score=60.70 Aligned_cols=253 Identities=9% Similarity=0.068 Sum_probs=157.7
Q ss_pred CCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC-EEEEEeCCC
Q 011711 213 DGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDG 291 (479)
Q Consensus 213 Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg 291 (479)
+.+|.|-|+..+......+...+..-+.+..+.++.-....+.++|+++...+....-...|.-..|-.+ .|+..+ +.
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~AdsAIMnP~~~ViALrag~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT-~t 126 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT-DN 126 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCCSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEEE-SS
T ss_pred CCEEEEEECCCCCCccccccccceeeeCCCccEEEEecCCeEEEechHHhhhhcceecCCccEEEEecCCCeEEEEc-CC
Confidence 3478888998887777777777777777788888877788999999999988776666678888888766 555555 45
Q ss_pred cEEEEEccCCCCCcccceeeecCCC----CCeEEEEEc--CCEEEEEe-------CCCeEEEEECCCCcEEEEEeCCCCC
Q 011711 292 NILVWKGIPNTQNPFQLAALLKGHT----RPVTCLAVG--GKRLYSGS-------MDNTIRVWDLDTLEAVMTLNGHTDA 358 (479)
Q Consensus 292 ~i~iwd~~~~~~~~~~~~~~~~~h~----~~i~~l~~~--~~~l~sgs-------~dg~I~iwd~~~~~~~~~~~~h~~~ 358 (479)
.|+-|++.... .+.+.+.-|. ..|.....+ .++++..+ -.|.+.+|..+. +.-+.+++|...
T Consensus 127 aVyHWs~~~~s----~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~ 201 (365)
T 2xzh_A 127 AVYHWSMEGES----QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAAS 201 (365)
T ss_dssp EEEEEESSTTC----CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEE
T ss_pred cEEEEcccCCC----CCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeeeee
Confidence 89999987633 2344444332 344444444 55544332 246788999875 445677777654
Q ss_pred cEEEEEcCC-----EEEEEeC---CCeEEEEEcCCC--c------ceEEeccccCccceEEEeeeeCCCCCcEEEEEeCC
Q 011711 359 PMSLLCWDQ-----YLLSCSL---DNTIKVWIMTEE--G------NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND 422 (479)
Q Consensus 359 v~~~~~~~~-----~l~s~s~---dg~i~iwd~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 422 (479)
-..+...++ .++.+.. .+.++|-++... . ....+....+...-..++...++.-. ++..-+.-
T Consensus 202 F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kyg-viyviTK~ 280 (365)
T 2xzh_A 202 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKY 280 (365)
T ss_dssp EEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTT-EEEEEETT
T ss_pred eEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCC-EEEEEeCC
Confidence 444444322 2333322 258999988543 1 11112222222222233333334444 67777889
Q ss_pred CeEEEeecCCCceeeeeec-cCceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 423 DSVHLYELPSFMERGRIFS-RREVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 423 g~v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
|.|++||++++.++..-.- .+.|...+-.... -++.-...|.|.--.+++
T Consensus 281 G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 281 GYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred cEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 9999999999998876653 5555555554433 455555788776666554
No 258
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.39 E-value=5.1e-05 Score=71.48 Aligned_cols=221 Identities=11% Similarity=-0.003 Sum_probs=128.0
Q ss_pred CeEEEeccCCeeEeCC--CCCeEEEeecCCCceeeEEE-------ecccccEEEEEeCCCCCEEEEEeC-----CCcEEE
Q 011711 153 KNVCYHWLSGNCVKGD--ECRFWHSWFCGEGFTMLAKL-------EGHKKAVSGIALPLRSDKLYSGSR-----DGTVQL 218 (479)
Q Consensus 153 ~~~c~~~~~~~~~~g~--~d~~i~vw~~~~~~~~~~~~-------~~H~~~V~~l~~s~~~~~l~s~s~-----Dg~v~v 218 (479)
..+.+.+.+..+++.. .++.++||.+.++ ++ ..+ .+|-..+.+++++++++++++-.. ++.|.+
T Consensus 20 ~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g-~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~ 97 (343)
T 2qe8_A 20 GNITLTPDGRLFLSLHQFYQPEMQVAELTQD-GL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVA 97 (343)
T ss_dssp EEEEECTTSCEEEEECGGGCCSCSEEEEETT-EE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEE
T ss_pred ceEEECCCCCEEEEeCCCCCCceEEEEECCC-Ce-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEE
Confidence 3455555555555532 1232556665544 32 222 235678999999999886665543 578999
Q ss_pred EECCCCceEEEEecCC-------ceeEEEe--CCCEEEEE-----cCCeEEEEEcCCCceEEec-CC-------------
Q 011711 219 WDCHTGQSASVINLGA-------EVGSLIC--EGPWVFVG-----MPNVVKAWHIESSAEFSLD-GP------------- 270 (479)
Q Consensus 219 wd~~~~~~~~~~~~~~-------~~~~~~~--~~~~l~~~-----~~~~i~v~~~~~~~~~~~~-~~------------- 270 (479)
||+.+++.+..+.... ....+.. ++..++++ .++.|.+||+.+++..... .|
T Consensus 98 ~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~ 177 (343)
T 2qe8_A 98 WDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVID 177 (343)
T ss_dssp EETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEET
T ss_pred EECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeEC
Confidence 9999999887776532 1233443 34444433 4679999999877654422 11
Q ss_pred ----------------CccEEEEEEcCC--EEEEEeCCC-cEEEEEccC---CCCCccccee--eecCCCCCeEEEEEc-
Q 011711 271 ----------------VGEVYSMVVANE--MLFAGAQDG-NILVWKGIP---NTQNPFQLAA--LLKGHTRPVTCLAVG- 325 (479)
Q Consensus 271 ----------------~~~v~~~~~~~~--~l~~g~~dg-~i~iwd~~~---~~~~~~~~~~--~~~~h~~~i~~l~~~- 325 (479)
...+..++++++ .|+++..++ .+..++... ......+... ...++......++++
T Consensus 178 g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~ 257 (343)
T 2qe8_A 178 GVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDK 257 (343)
T ss_dssp TEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT
T ss_pred CEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECC
Confidence 023578999887 677776665 555555321 1100000000 111233345567776
Q ss_pred -CCEEEEEeCCCeEEEEECCCCcEEEEEeCC-CCCcEEEEEc--CCEEEEEeCC
Q 011711 326 -GKRLYSGSMDNTIRVWDLDTLEAVMTLNGH-TDAPMSLLCW--DQYLLSCSLD 375 (479)
Q Consensus 326 -~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h-~~~v~~~~~~--~~~l~s~s~d 375 (479)
+.++++...++.|.+||..+++........ ...+.++++. +.++++.+..
T Consensus 258 ~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 258 DHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp TCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred CCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence 788888888999999998666643333221 3346677665 4444454433
No 259
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.35 E-value=0.00044 Score=66.18 Aligned_cols=207 Identities=10% Similarity=0.024 Sum_probs=130.1
Q ss_pred eeEeCCCCCeEEEeecCCC---ceeeEEEec-------ccccEEEEEeCCCCCEEEEEeCC------CcEEEEECCCCce
Q 011711 163 NCVKGDECRFWHSWFCGEG---FTMLAKLEG-------HKKAVSGIALPLRSDKLYSGSRD------GTVQLWDCHTGQS 226 (479)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~---~~~~~~~~~-------H~~~V~~l~~s~~~~~l~s~s~D------g~v~vwd~~~~~~ 226 (479)
.++.|..+..|+|+|+.+. .+..++++. -...-..+...|+| .++++..+ +.|.+.|.++++.
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v 176 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP 176 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence 4567888999999999643 355555530 11234556778999 77777666 7899999999999
Q ss_pred EEEEecCCce------eEEEeCCCEEEEEc--------------------CCeEEEEEcCCCceEE-ecC--CCccEEEE
Q 011711 227 ASVINLGAEV------GSLICEGPWVFVGM--------------------PNVVKAWHIESSAEFS-LDG--PVGEVYSM 277 (479)
Q Consensus 227 ~~~~~~~~~~------~~~~~~~~~l~~~~--------------------~~~i~v~~~~~~~~~~-~~~--~~~~v~~~ 277 (479)
+..+..+... ..+.++++.++++. .+.|.+||+.+++... +.- .......+
T Consensus 177 ~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i 256 (462)
T 2ece_A 177 LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALEL 256 (462)
T ss_dssp EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEE
T ss_pred EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCcccee
Confidence 9998754221 22356788888874 7899999999876543 222 11233455
Q ss_pred EE--cCC--EEEEEe------CCCcEEEEEccCCCCCcccceeee--cCC----------------CCCeEEEEEc--CC
Q 011711 278 VV--ANE--MLFAGA------QDGNILVWKGIPNTQNPFQLAALL--KGH----------------TRPVTCLAVG--GK 327 (479)
Q Consensus 278 ~~--~~~--~l~~g~------~dg~i~iwd~~~~~~~~~~~~~~~--~~h----------------~~~i~~l~~~--~~ 327 (479)
.+ +++ ++++++ .+++|.+|....+. ++..+.+ ... ......|.++ ++
T Consensus 257 ~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~---~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGr 333 (462)
T 2ece_A 257 RPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK---WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDK 333 (462)
T ss_dssp EECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE---EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSC
T ss_pred EeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc---eeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCC
Confidence 55 766 555544 56788877765432 2222211 000 1335566665 88
Q ss_pred EEEEEeC-CCeEEEEECC---CCcEEEEEeCC----------------CCCcEEEEEcCCEEEEEe
Q 011711 328 RLYSGSM-DNTIRVWDLD---TLEAVMTLNGH----------------TDAPMSLLCWDQYLLSCS 373 (479)
Q Consensus 328 ~l~sgs~-dg~I~iwd~~---~~~~~~~~~~h----------------~~~v~~~~~~~~~l~s~s 373 (479)
+|+++.. .+.|.+||+. +.+.+..+... ...-..++.+|++|+++.
T Consensus 334 fLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 334 FLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 8877664 6899999985 34556555432 122344444588888777
No 260
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.32 E-value=0.002 Score=59.62 Aligned_cols=222 Identities=12% Similarity=0.048 Sum_probs=128.1
Q ss_pred EEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEE-EEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEE
Q 011711 245 WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLF-AGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (479)
Q Consensus 245 ~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~ 321 (479)
+|+.+..+.|+..++.+...............+++++. .|+ +-..++.|..+++...... ......+...-.....
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~-~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-SSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEEECSSCSCCCE
T ss_pred EEEEECCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC-cccEEEEeCCCCCcCE
Confidence 45555556677777776654444444566788888853 444 4455688999998752100 0011112222234467
Q ss_pred EEEc--CC-EEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCC--CeEEEEEcCCCcceEEec-
Q 011711 322 LAVG--GK-RLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLD--NTIKVWIMTEEGNLEVAY- 393 (479)
Q Consensus 322 l~~~--~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~d--g~i~iwd~~~~~~~~~~~- 393 (479)
++++ ++ .+++-...+.|.++|+........+.........++.+ +..|+.+... +.|...++.... ...+.
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~ 160 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVT 160 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEEC
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEE
Confidence 7775 44 44555678899999987654433344334456777776 4555554442 688888875432 22222
Q ss_pred cccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec----cCceEEEEECCCceEEEEcCCCcEEEEE
Q 011711 394 THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS----RREVRVIETGPDGLFFTGDGTGMLSVWK 469 (479)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~v~~l~~s~~g~l~sg~~dg~v~vw~ 469 (479)
..-.....+++ ++++..++++-...+.|..+|++... ...+.. ......+++..+.++++-...+.|..++
T Consensus 161 ~~~~~P~gla~----d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~ 235 (316)
T 1ijq_A 161 ENIQWPNGITL----DLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSAN 235 (316)
T ss_dssp SSCSCEEEEEE----ETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred CCCCCceEEEE----eccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEe
Confidence 11122223344 57777677777778899999987533 222321 2346778886443777777788888887
Q ss_pred eccC
Q 011711 470 ILAK 473 (479)
Q Consensus 470 ~~~~ 473 (479)
..++
T Consensus 236 ~~~g 239 (316)
T 1ijq_A 236 RLTG 239 (316)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 6444
No 261
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.27 E-value=0.00018 Score=71.25 Aligned_cols=247 Identities=11% Similarity=0.045 Sum_probs=150.4
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEE------------cCCCceE-EecCCCcc
Q 011711 207 LYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWH------------IESSAEF-SLDGPVGE 273 (479)
Q Consensus 207 l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~------------~~~~~~~-~~~~~~~~ 273 (479)
+.||+..|.|+|+-+.+++.+..+..-......-. |- .+.+.++.. ......+ .-..|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~-g~-----~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh-- 89 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGW-GQ-----TNESVRIHERTMSERTKKFLAANGKRIHDNGDLHH-- 89 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCT-TT-----BHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCC--
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCccc-CC-----chhHHHHHhccCCccchhhhhccCceecccCCCCc--
Confidence 77889999999999999999988874322100000 00 000000000 0000000 001111
Q ss_pred EEEEEE-----cCCEEEEEe-CCCcEEEEEccCCCCCcccceeeecC-CCCCeEEEEE----cCCEEEEEe---------
Q 011711 274 VYSMVV-----ANEMLFAGA-QDGNILVWKGIPNTQNPFQLAALLKG-HTRPVTCLAV----GGKRLYSGS--------- 333 (479)
Q Consensus 274 v~~~~~-----~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~-h~~~i~~l~~----~~~~l~sgs--------- 333 (479)
..+.+ +..++++.. .++.|.+.|+.+.+. ...+.- .......+++ +++++++++
T Consensus 90 -~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~-----~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~d 163 (595)
T 1fwx_A 90 -VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKC-----DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVND 163 (595)
T ss_dssp -EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEE-----EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCS
T ss_pred -cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceE-----eeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCC
Confidence 34444 233555544 566799999988542 332221 1234667775 478888884
Q ss_pred ---------CCCeEEEEECCCCcEEEEEeC-CCCCcEEEEEcCCEEEEEeCCC---------------------------
Q 011711 334 ---------MDNTIRVWDLDTLEAVMTLNG-HTDAPMSLLCWDQYLLSCSLDN--------------------------- 376 (479)
Q Consensus 334 ---------~dg~I~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~l~s~s~dg--------------------------- 376 (479)
.++.+.+.|..+.+.+.++.. ....-..+..+++++++.+.+.
T Consensus 164 g~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~ 243 (595)
T 1fwx_A 164 GTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK 243 (595)
T ss_dssp SSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred CcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence 346799999999999888863 2223344555688888777553
Q ss_pred -----------eEEEEEcCC--Ccc-eEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCc--------
Q 011711 377 -----------TIKVWIMTE--EGN-LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFM-------- 434 (479)
Q Consensus 377 -----------~i~iwd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-------- 434 (479)
.|.+.|..+ +.. +..+.....+ ..+.+ +|||+++++++..+.+|.++|+.+.+
T Consensus 244 ~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~P-hGv~~----sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~ 318 (595)
T 1fwx_A 244 AIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNP-HGCNM----APDKKHLCVAGKLSPTVTVLDVTRFDAVFYENAD 318 (595)
T ss_dssp HHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSC-CCEEE----CTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCC
T ss_pred eccCCCeeEECcEEEEeCcccCCceeEEEEecCCCc-eEEEE----cCCCCEEEEeCCCCCeEEEEECcccccccccccC
Confidence 355666655 222 2222222222 22333 69999888888899999999998753
Q ss_pred ----eeeeeeccCceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 435 ----ERGRIFSRREVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 435 ----~~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
....+........++|+|+| .+++.-.|+.|.+|++..
T Consensus 319 ~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 319 PRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred cccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 33444456779999999999 777888899999999976
No 262
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.27 E-value=0.0031 Score=59.56 Aligned_cols=252 Identities=9% Similarity=0.052 Sum_probs=157.1
Q ss_pred CcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC-EEEEEeCCCc
Q 011711 214 GTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGN 292 (479)
Q Consensus 214 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~ 292 (479)
..|.|-|+..+..+...+...+..-+.+..++++.-....+.++|+++...+........|.-..|-.+ .|+..+ +..
T Consensus 48 ~~vvIiDl~~~~~~~rrpi~AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT-~ta 126 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT-DNA 126 (494)
T ss_dssp CEEEEEETTSTTSCEEEECCCSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEEC-SSE
T ss_pred CeEEEEECCCCCcceecccccceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEc-CCe
Confidence 478888888887777777777776777778888877788999999999887765555556777777544 665555 458
Q ss_pred EEEEEccCCCCCcccceeeecCCC----CCeEEEEEc--CCEEEEEe-------CCCeEEEEECCCCcEEEEEeCCCCCc
Q 011711 293 ILVWKGIPNTQNPFQLAALLKGHT----RPVTCLAVG--GKRLYSGS-------MDNTIRVWDLDTLEAVMTLNGHTDAP 359 (479)
Q Consensus 293 i~iwd~~~~~~~~~~~~~~~~~h~----~~i~~l~~~--~~~l~sgs-------~dg~I~iwd~~~~~~~~~~~~h~~~v 359 (479)
|+-|++.... .+.+.+.-|. ..|.....+ .++++..+ -.|.+.+|..+.+ .-+.+++|...-
T Consensus 127 VyHWsi~~~s----~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F 201 (494)
T 1bpo_A 127 VYHWSMEGES----QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF 201 (494)
T ss_dssp EEEEESSSSC----CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEE
T ss_pred eEEecccCCC----CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeee
Confidence 9999987632 2344444332 334444444 55544322 3477889998754 456778886655
Q ss_pred EEEEEcC-----CEEEEEeCC---CeEEEEEcCCC--------cceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCC
Q 011711 360 MSLLCWD-----QYLLSCSLD---NTIKVWIMTEE--------GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD 423 (479)
Q Consensus 360 ~~~~~~~-----~~l~s~s~d---g~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 423 (479)
..+...| ..++.+... +.++|-++... +....+....+......++...++.-. ++..-+.-|
T Consensus 202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G 280 (494)
T 1bpo_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYG 280 (494)
T ss_dssp EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTS
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-EEEEEecCc
Confidence 5555543 234444432 78999998543 111122222222222333333345444 677778999
Q ss_pred eEEEeecCCCceeeeeec-cCceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 424 SVHLYELPSFMERGRIFS-RREVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 424 ~v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
.|++||+.++..+..-.- .+.|...+-.... -++.-...|.|.--.+++
T Consensus 281 ~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 281 YIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred eEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 999999999998876553 4555555544433 455555778776655554
No 263
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.26 E-value=0.0023 Score=60.25 Aligned_cols=189 Identities=15% Similarity=0.093 Sum_probs=111.6
Q ss_pred ccEEEEEEcCC--EEE-EEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCC
Q 011711 272 GEVYSMVVANE--MLF-AGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDT 345 (479)
Q Consensus 272 ~~v~~~~~~~~--~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~ 345 (479)
.....++|++. .|+ +-...+.|..+++..... .............++++ ++++++-...+.|.+.+++.
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-----~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG 147 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-----EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 147 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCc-----eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC
Confidence 44678888753 444 445678888898876532 11122222334567775 44556666678999999876
Q ss_pred CcEEEEEeCCCCCcEEEEEc--CCEEE-EEeCC-CeEEEEEcCCCcceEEecc-ccCccceEEEeeeeCCCCCcEEEEEe
Q 011711 346 LEAVMTLNGHTDAPMSLLCW--DQYLL-SCSLD-NTIKVWIMTEEGNLEVAYT-HNEDHGVLALGGLNDPDGNPVLICSC 420 (479)
Q Consensus 346 ~~~~~~~~~h~~~v~~~~~~--~~~l~-s~s~d-g~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~ 420 (479)
......+...-.....++++ +..|+ +-... +.|..++++.... ..+.. .......+++ +|++..+.++-.
T Consensus 148 ~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGla~----d~~~~~lY~aD~ 222 (349)
T 3v64_C 148 AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWPNGLTI----DYAGRRMYWVDA 222 (349)
T ss_dssp CSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EESCCSSCSCEEEEEE----ETTTTEEEEEET
T ss_pred CceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCcceEEE----eCCCCEEEEEEC
Confidence 54433343344456777776 44544 44444 7888888764332 22221 1112233444 577776777777
Q ss_pred CCCeEEEeecCCCceeeeee-ccCceEEEEECCCceEEEEcCCCcEEEEEe
Q 011711 421 NDDSVHLYELPSFMERGRIF-SRREVRVIETGPDGLFFTGDGTGMLSVWKI 470 (479)
Q Consensus 421 ~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g~l~sg~~dg~v~vw~~ 470 (479)
..+.|..+|+........+. .......+++..+.++++-...+.|...+-
T Consensus 223 ~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~ 273 (349)
T 3v64_C 223 KHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANK 273 (349)
T ss_dssp TTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred CCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEc
Confidence 78899999987543222222 234567788844437777777788877773
No 264
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.25 E-value=0.00054 Score=63.68 Aligned_cols=227 Identities=8% Similarity=0.007 Sum_probs=130.7
Q ss_pred CCeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEec--------------------ccccEEEEEeCC-CCCEEEEE
Q 011711 152 PKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEG--------------------HKKAVSGIALPL-RSDKLYSG 210 (479)
Q Consensus 152 ~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~--------------------H~~~V~~l~~s~-~~~~l~s~ 210 (479)
+..++....+..+.++..++.|..|+..++ + +..+.. ....+..+++.+ +++ |+.+
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~-~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNS-G-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTT-C-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCC-c-eEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 355666655554777778899999988765 2 222221 123578999997 554 5555
Q ss_pred eCCCcEEEEECCCCceEEEEe--cC---CceeEEE--e-CCCEEEEEcC------------------CeEEEEEcCCCce
Q 011711 211 SRDGTVQLWDCHTGQSASVIN--LG---AEVGSLI--C-EGPWVFVGMP------------------NVVKAWHIESSAE 264 (479)
Q Consensus 211 s~Dg~v~vwd~~~~~~~~~~~--~~---~~~~~~~--~-~~~~l~~~~~------------------~~i~v~~~~~~~~ 264 (479)
...+.|..+|..+++...... .. .....+. . +|.+.++... +.|..+|..+++.
T Consensus 98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 555558888877654322211 11 1122233 4 5666665432 5688888776654
Q ss_pred EEecCCCccEEEEEEcCC--EEEEE-eCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeC-----
Q 011711 265 FSLDGPVGEVYSMVVANE--MLFAG-AQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSM----- 334 (479)
Q Consensus 265 ~~~~~~~~~v~~~~~~~~--~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~----- 334 (479)
............++++++ .|+++ ..++.|.+|++........+....+ .. ...++++ |++.++...
T Consensus 178 ~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G~l~va~~~~~~~~ 253 (322)
T 2fp8_A 178 TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADGHFWVSSSEELDGN 253 (322)
T ss_dssp EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCCCEEEEecCccccc
Confidence 332222233456888876 45555 5568999999875432112222221 22 6778886 665555433
Q ss_pred -----CCeEEEEECCCCcEEEEEeCCC----CCcEEEEEcCCEEEE-EeCCCeEEEEEcCCC
Q 011711 335 -----DNTIRVWDLDTLEAVMTLNGHT----DAPMSLLCWDQYLLS-CSLDNTIKVWIMTEE 386 (479)
Q Consensus 335 -----dg~I~iwd~~~~~~~~~~~~h~----~~v~~~~~~~~~l~s-~s~dg~i~iwd~~~~ 386 (479)
.+.|..+|.. ++.+..+.... ..+..+...+..|+. ....+.|..+++...
T Consensus 254 ~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 254 MHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC---
T ss_pred ccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecccc
Confidence 4678899874 77777776543 335556556544444 445778888887543
No 265
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.25 E-value=0.001 Score=63.54 Aligned_cols=193 Identities=15% Similarity=0.095 Sum_probs=113.0
Q ss_pred CccEEEEEEcCC--E-EEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECC
Q 011711 271 VGEVYSMVVANE--M-LFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLD 344 (479)
Q Consensus 271 ~~~v~~~~~~~~--~-l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~ 344 (479)
......++|++. . +++-...+.|..+++..... .............++++ +.++++-...+.|.+.+++
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-----~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d 189 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-----EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD 189 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-----EEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTT
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-----EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC
Confidence 345678888753 4 44445677888888776531 11122222233456665 4455566667889999987
Q ss_pred CCcEEEEEeCCCCCcEEEEEc--CCEEEEEe-CC-CeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEe
Q 011711 345 TLEAVMTLNGHTDAPMSLLCW--DQYLLSCS-LD-NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC 420 (479)
Q Consensus 345 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 420 (479)
.......+.........++.+ +..|+... .. +.|..+++..................+++ +|++..+.++-.
T Consensus 190 g~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlav----d~~~~~lY~aD~ 265 (386)
T 3v65_B 190 GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTI----DYAGRRMYWVDA 265 (386)
T ss_dssp SCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEE----EGGGTEEEEEET
T ss_pred CCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEE----eCCCCEEEEEEC
Confidence 654443444344556777776 45554444 34 67888887654333222222222233444 566665777777
Q ss_pred CCCeEEEeecCCCceeeeee-ccCceEEEEECCCceEEEEcCCCcEEEEEecc
Q 011711 421 NDDSVHLYELPSFMERGRIF-SRREVRVIETGPDGLFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 421 ~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~ 472 (479)
..+.|..+|+........+. .......+++..+.++++-...+.|..++..+
T Consensus 266 ~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~ 318 (386)
T 3v65_B 266 KHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFT 318 (386)
T ss_dssp TTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred CCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCC
Confidence 78899999987543322222 24457788885444777777788888887433
No 266
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.20 E-value=0.005 Score=59.05 Aligned_cols=199 Identities=10% Similarity=0.006 Sum_probs=117.5
Q ss_pred CCccEEEEEEcCC--EEEEE-eCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEEC
Q 011711 270 PVGEVYSMVVANE--MLFAG-AQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDL 343 (479)
Q Consensus 270 ~~~~v~~~~~~~~--~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~ 343 (479)
....+..++|++. .|+.. ...+.|+.+++...... ................++++ ++++++-...+.|.+.++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~-~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~ 188 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 188 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC-CcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence 4556778888853 44444 45678888887652210 01122223334456778876 445555567789999999
Q ss_pred CCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeC--CCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEE
Q 011711 344 DTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSL--DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICS 419 (479)
Q Consensus 344 ~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 419 (479)
+.......+...-.....++.+ +.+|+.... .+.|...++............-.....+++ ++++..+.++-
T Consensus 189 ~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav----d~~~~~lY~aD 264 (400)
T 3p5b_L 189 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITL----DLLSGRLYWVD 264 (400)
T ss_dssp TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEE----ETTTTEEEEEE
T ss_pred CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEE----EeCCCEEEEEE
Confidence 8765544454444456777776 455555442 367888888654433332222222334444 47777577776
Q ss_pred eCCCeEEEeecCCCceeeeeec---cCceEEEEECCCceEEEEcCCCcEEEEEeccC
Q 011711 420 CNDDSVHLYELPSFMERGRIFS---RREVRVIETGPDGLFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 420 ~~dg~v~iwd~~~~~~~~~~~~---~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~~ 473 (479)
...+.|..+|++.......... ......+++..+.++.+-...+.|..++..++
T Consensus 265 ~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 265 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp TTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSC
T ss_pred CCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCC
Confidence 7778999999875433322221 24466778755557777777888888885444
No 267
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.12 E-value=0.00043 Score=71.30 Aligned_cols=247 Identities=13% Similarity=0.059 Sum_probs=123.8
Q ss_pred eEEEeecCCC-ceeeEEEec-ccccEEEEEeCCCCCEEEEEeC-CCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEE
Q 011711 172 FWHSWFCGEG-FTMLAKLEG-HKKAVSGIALPLRSDKLYSGSR-DGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFV 248 (479)
Q Consensus 172 ~i~vw~~~~~-~~~~~~~~~-H~~~V~~l~~s~~~~~l~s~s~-Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 248 (479)
.+.+||..++ ...+..+.. +.....++++..++++++.|+. +..+.+||..+++-...-...
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~--------------- 284 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ--------------- 284 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCS---------------
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCC---------------
Confidence 6889998766 233333322 3333445677789999999984 457888988776533221110
Q ss_pred EcCCeEEEEEcCCCceEEecCCCccEEEEEE-cCCEEEEEe-CC-----CcEEEEEccCCCCCcccce-----eeecCCC
Q 011711 249 GMPNVVKAWHIESSAEFSLDGPVGEVYSMVV-ANEMLFAGA-QD-----GNILVWKGIPNTQNPFQLA-----ALLKGHT 316 (479)
Q Consensus 249 ~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~g~-~d-----g~i~iwd~~~~~~~~~~~~-----~~~~~h~ 316 (479)
.......+... .+.+++.|+ .+ ..+.+||..++. ++.+ ..+....
T Consensus 285 --------------------~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~---W~~~~~~~~~p~~~~~ 341 (656)
T 1k3i_A 285 --------------------VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT---WTSLPNAKVNPMLTAD 341 (656)
T ss_dssp --------------------SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE---EEEETTSCSGGGCCCC
T ss_pred --------------------ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc---ceeCCCcccccccccc
Confidence 11111122222 233555555 33 457888876543 1111 0000000
Q ss_pred CCeEEEEEcCCEEEEEeC---------CCeEEEEECCCCcEEEEEeCCCC---------CcEEEEE---cCCEEEEEeCC
Q 011711 317 RPVTCLAVGGKRLYSGSM---------DNTIRVWDLDTLEAVMTLNGHTD---------APMSLLC---WDQYLLSCSLD 375 (479)
Q Consensus 317 ~~i~~l~~~~~~l~sgs~---------dg~I~iwd~~~~~~~~~~~~h~~---------~v~~~~~---~~~~l~s~s~d 375 (479)
.. ..+..++..++.|+. ...+..||..+.........+.. .-.++.+ .+++++.|+.+
T Consensus 342 ~~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~ 420 (656)
T 1k3i_A 342 KQ-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSP 420 (656)
T ss_dssp TT-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBS
T ss_pred cc-ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCC
Confidence 00 000012333333333 34678899888765443332211 2233332 36677777754
Q ss_pred C-----------eEEEEEcCCCcceEEe--ccccCccceEEEeeeeCCCCCcEEEEEeCC-----------CeEEEeecC
Q 011711 376 N-----------TIKVWIMTEEGNLEVA--YTHNEDHGVLALGGLNDPDGNPVLICSCND-----------DSVHLYELP 431 (479)
Q Consensus 376 g-----------~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----------g~v~iwd~~ 431 (479)
+ .|.+||..+..-.... ..........+. ..|+++ +++.|+.+ ..+.+||..
T Consensus 421 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~---~l~~g~-i~v~GG~~~~~~~~~~~~~~~v~~ydp~ 496 (656)
T 1k3i_A 421 DYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSV---VLPDGS-TFITGGQRRGIPFEDSTPVFTPEIYVPE 496 (656)
T ss_dssp SSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEE---ECTTSC-EEEECCBSBCCTTCCCSBCCCCEEEEGG
T ss_pred CCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeE---ECCCCC-EEEECCcccCcCcCCCCcccceEEEcCC
Confidence 2 6778887765433222 111111111111 137887 77777654 468999987
Q ss_pred CCcee--eeeec-cCceEEEEECCCc-eEEEEcC
Q 011711 432 SFMER--GRIFS-RREVRVIETGPDG-LFFTGDG 461 (479)
Q Consensus 432 ~~~~~--~~~~~-~~~v~~l~~s~~g-~l~sg~~ 461 (479)
+.+-. ..... ........+.|+| .++.|+.
T Consensus 497 t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 497 QDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp GTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 65422 11111 2223455667899 7888875
No 268
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.09 E-value=0.0064 Score=56.25 Aligned_cols=222 Identities=11% Similarity=0.019 Sum_probs=128.3
Q ss_pred EEEEEcCCeEEEEEcCCCc--eEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCe
Q 011711 245 WVFVGMPNVVKAWHIESSA--EFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPV 319 (479)
Q Consensus 245 ~l~~~~~~~i~v~~~~~~~--~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i 319 (479)
+|+.+....|+.+++.... ............+++|++. ++++-...+.|..+++...... .......-...
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~----~~~~~~~l~~p 81 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV----QNVVVSGLLSP 81 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC----CEEEEECCSCC
T ss_pred EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce----EEEEcCCCCCc
Confidence 4555556667777776553 1111122234667888753 4445556788999988765321 11111112334
Q ss_pred EEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEe--CCCeEEEEEcCCCcceEEe
Q 011711 320 TCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCS--LDNTIKVWIMTEEGNLEVA 392 (479)
Q Consensus 320 ~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s--~dg~i~iwd~~~~~~~~~~ 392 (479)
..++++ ++++++-...+.|.+++++.......+.........++.+ +..|+.+. ..+.|...+++........
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~ 161 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII 161 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE
Confidence 566665 4555566677899999987644333333444456777776 45555554 2578888887643322222
Q ss_pred ccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEECCCceEEEEcCCCcEEEEEec
Q 011711 393 YTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDGLFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~ 471 (479)
...-.....+++ ++++..+.++-...+.|..+|++......... .......+++..++++.+-...+.|..++..
T Consensus 162 ~~~l~~Pnglav----d~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~ 237 (318)
T 3sov_A 162 NSEIYWPNGLTL----DYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKY 237 (318)
T ss_dssp CSSCSCEEEEEE----ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred ECCCCCccEEEE----eccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECC
Confidence 221122233444 57776677777778899999987533222222 2445677888665577777778888888875
Q ss_pred cCC
Q 011711 472 AKP 474 (479)
Q Consensus 472 ~~~ 474 (479)
+++
T Consensus 238 ~G~ 240 (318)
T 3sov_A 238 TGE 240 (318)
T ss_dssp TCC
T ss_pred CCC
Confidence 544
No 269
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.09 E-value=0.00033 Score=72.24 Aligned_cols=184 Identities=13% Similarity=0.113 Sum_probs=98.4
Q ss_pred EEEEEe-CCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEE-cCCEEEEEe-CC-----CeEEEEECCCCcEEEEEeC
Q 011711 283 MLFAGA-QDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV-GGKRLYSGS-MD-----NTIRVWDLDTLEAVMTLNG 354 (479)
Q Consensus 283 ~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~-~~~~l~sgs-~d-----g~I~iwd~~~~~~~~~~~~ 354 (479)
++++|+ .+..+.+||..++. +.....+......-.+..+ +++.++.|+ .+ ..+.+||..+.+-... ..
T Consensus 256 lyv~GG~~~~~v~~yd~~t~~---W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~-~~ 331 (656)
T 1k3i_A 256 IVVTGGNDAKKTSLYDSSSDS---WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL-PN 331 (656)
T ss_dssp EEEECSSSTTCEEEEEGGGTE---EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE-TT
T ss_pred EEEeCCCCCCceEEecCcCCc---eeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC-CC
Confidence 666666 45679999987754 2222223323333444555 688888888 34 5799999988664322 10
Q ss_pred ------CCCCcEEE-EEcCCEEEEEeCC---------CeEEEEEcCCCcceEEeccccC-------ccceEEEeeeeC-C
Q 011711 355 ------HTDAPMSL-LCWDQYLLSCSLD---------NTIKVWIMTEEGNLEVAYTHNE-------DHGVLALGGLND-P 410 (479)
Q Consensus 355 ------h~~~v~~~-~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~ 410 (479)
....-.++ ...+..++.++.+ ..+..||..+............ .....++ .+. .
T Consensus 332 ~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av--~~~~~ 409 (656)
T 1k3i_A 332 AKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV--MYDAV 409 (656)
T ss_dssp SCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE--EEETT
T ss_pred ccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE--eccCC
Confidence 00000000 0123344444443 4567888877653322221111 0111111 111 3
Q ss_pred CCCcEEEEEeCCC-----------eEEEeecCCCceeee----eeccCceEEEEECCCc-eEEEEcCC-----------C
Q 011711 411 DGNPVLICSCNDD-----------SVHLYELPSFMERGR----IFSRREVRVIETGPDG-LFFTGDGT-----------G 463 (479)
Q Consensus 411 ~~~~~l~s~~~dg-----------~v~iwd~~~~~~~~~----~~~~~~v~~l~~s~~g-~l~sg~~d-----------g 463 (479)
+++ +++.|+.++ .|.+||..+..-... +.....-.+++..|++ +++.|+.+ .
T Consensus 410 ~~~-i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~ 488 (656)
T 1k3i_A 410 KGK-ILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVF 488 (656)
T ss_dssp TTE-EEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCC
T ss_pred CCe-EEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCccc
Confidence 454 788887532 688888876543322 2222233456777888 88888754 4
Q ss_pred cEEEEEeccC
Q 011711 464 MLSVWKILAK 473 (479)
Q Consensus 464 ~v~vw~~~~~ 473 (479)
.+.+||..+.
T Consensus 489 ~v~~ydp~t~ 498 (656)
T 1k3i_A 489 TPEIYVPEQD 498 (656)
T ss_dssp CCEEEEGGGT
T ss_pred ceEEEcCCCC
Confidence 6889997654
No 270
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.04 E-value=0.0071 Score=54.95 Aligned_cols=252 Identities=11% Similarity=0.070 Sum_probs=162.2
Q ss_pred CCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEe-CCCEEE
Q 011711 169 ECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC-EGPWVF 247 (479)
Q Consensus 169 ~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 247 (479)
+...+.|-|+.++.+..+.--.-+++| .+|..+.+|-=. ..++.|+|+++.+.+..+...+++....+ +.+.|.
T Consensus 47 ~~~~VvIiDl~n~~~~~Rrpi~AdsAI----MnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~ 121 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIRRPISADSAI----MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA 121 (365)
T ss_dssp TEEEEEEEETTSTTSCEEEECCCSEEE----ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEE
T ss_pred CCCEEEEEECCCCCCccccccccceee----eCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCCeEE
Confidence 445789999988755544433334444 378888777665 67999999999999999999988887776 777888
Q ss_pred EEcCCeEEEEEcCCCce--EEecCC----CccEEEEEEcCC---EEEEEe------CCCcEEEEEccCCCCCcccceeee
Q 011711 248 VGMPNVVKAWHIESSAE--FSLDGP----VGEVYSMVVANE---MLFAGA------QDGNILVWKGIPNTQNPFQLAALL 312 (479)
Q Consensus 248 ~~~~~~i~v~~~~~~~~--~~~~~~----~~~v~~~~~~~~---~l~~g~------~dg~i~iwd~~~~~~~~~~~~~~~ 312 (479)
.-.+..|..|+++.... ..+..| ..+|.....+++ .+++|- -.|.+.+|..+.+ ..+.+
T Consensus 122 lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~------~sQ~i 195 (365)
T 2xzh_A 122 LVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------VSQPI 195 (365)
T ss_dssp EEESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT------EEEEE
T ss_pred EEcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc------cccee
Confidence 88999999999976332 222222 356777777776 444443 2367889987765 35667
Q ss_pred cCCCCCeEEEEEcCC-----EEEEEeC---CCeEEEEECCCC---c-----EEEEE-eC---CCCCcEEEEEc--CCEEE
Q 011711 313 KGHTRPVTCLAVGGK-----RLYSGSM---DNTIRVWDLDTL---E-----AVMTL-NG---HTDAPMSLLCW--DQYLL 370 (479)
Q Consensus 313 ~~h~~~i~~l~~~~~-----~l~sgs~---dg~I~iwd~~~~---~-----~~~~~-~~---h~~~v~~~~~~--~~~l~ 370 (479)
++|...-..+..+|+ .++.+.. .+++++-++... . ....+ -. ..+-..++..+ -..++
T Consensus 196 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviy 275 (365)
T 2xzh_A 196 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 275 (365)
T ss_dssp CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEE
T ss_pred eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEE
Confidence 888665555554422 2333322 268999998542 1 11111 11 23345666666 46788
Q ss_pred EEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCcee
Q 011711 371 SCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMER 436 (479)
Q Consensus 371 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 436 (479)
.-..-|.|.+||++++.++..-.-..+.+-..+. +.+.. -+++....|.|.--.++....+
T Consensus 276 viTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~----~~~~~-Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 276 LITKYGYIHLYDLETGTCIYMNRISGETIFVTAP----HEATA-GIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE----EGGGT-EEEEEETTCEEEEEEECTTTHH
T ss_pred EEeCCcEEEEEEcccCcEEEEeccCCCceEEecc----cCCCC-cEEEEcCCCEEEEEEECcccEe
Confidence 8899999999999999887666555554322221 22222 2444457777776666654443
No 271
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.03 E-value=0.0022 Score=59.54 Aligned_cols=226 Identities=13% Similarity=0.102 Sum_probs=126.3
Q ss_pred ccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecC--------------------CceeEEEe---CCCEEEEE
Q 011711 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG--------------------AEVGSLIC---EGPWVFVG 249 (479)
Q Consensus 193 ~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~--------------------~~~~~~~~---~~~~l~~~ 249 (479)
....++++.+++++++++..++.|..||..+++........ .....+.. +++++++.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 44667889999998889989999999998766543221100 12333433 45566665
Q ss_pred cCCeEEEEEcCCCceEEecC-----CCccEEEEEEcC-C-EEEEEeC------------------CCcEEEEEccCCCCC
Q 011711 250 MPNVVKAWHIESSAEFSLDG-----PVGEVYSMVVAN-E-MLFAGAQ------------------DGNILVWKGIPNTQN 304 (479)
Q Consensus 250 ~~~~i~v~~~~~~~~~~~~~-----~~~~v~~~~~~~-~-~l~~g~~------------------dg~i~iwd~~~~~~~ 304 (479)
..+.+..+|..++....+.. .......+++.+ + .|.++.. +|.|..+|..++..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~- 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET- 177 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE-
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE-
Confidence 66678888877654322211 123467888887 5 4444432 36688888655431
Q ss_pred cccceeeecCCCCCeEEEEEc--CCEEEEE-eCCCeEEEEECCCCc--EEEEEeCCCCCcEEEEEc--CCEEEEEeC---
Q 011711 305 PFQLAALLKGHTRPVTCLAVG--GKRLYSG-SMDNTIRVWDLDTLE--AVMTLNGHTDAPMSLLCW--DQYLLSCSL--- 374 (479)
Q Consensus 305 ~~~~~~~~~~h~~~i~~l~~~--~~~l~sg-s~dg~I~iwd~~~~~--~~~~~~~h~~~v~~~~~~--~~~l~s~s~--- 374 (479)
..+.........++++ ++.|+.+ +.++.|..|++.... ....+..... ...+..+ |++.++...
T Consensus 178 -----~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~ 251 (322)
T 2fp8_A 178 -----TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELD 251 (322)
T ss_dssp -----EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETT
T ss_pred -----EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccc
Confidence 1111111233467776 6666555 566899999987521 1122211222 5666666 565555443
Q ss_pred -------CCeEEEEEcCCCcceEEeccccC----ccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC
Q 011711 375 -------DNTIKVWIMTEEGNLEVAYTHNE----DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (479)
Q Consensus 375 -------dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 432 (479)
.+.|..+|.. ++.+..+..... ....+.. .++. ++++...++.|..+++..
T Consensus 252 ~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-----~~g~-L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 252 GNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-----HDGL-LYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp SSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-----ETTE-EEEECSSCSEEEEEEC--
T ss_pred ccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-----eCCE-EEEeecCCCceEEEeccc
Confidence 3567788764 444443333221 1122221 3444 666666778888888753
No 272
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.02 E-value=0.00036 Score=69.22 Aligned_cols=251 Identities=14% Similarity=0.109 Sum_probs=149.4
Q ss_pred eeEeCCCCCeEEEeecCCCceeeEEEecc-cccEEEEEe-C-CCCCEEEEEe------------------CCCcEEEEEC
Q 011711 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGH-KKAVSGIAL-P-LRSDKLYSGS------------------RDGTVQLWDC 221 (479)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~~~~H-~~~V~~l~~-s-~~~~~l~s~s------------------~Dg~v~vwd~ 221 (479)
..+....+..|.+.|+.+. +....+.-- ......+++ + |++++++.++ .++.+.+.|.
T Consensus 104 lfVnd~~~~rVavIdl~t~-~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~ 182 (595)
T 1fwx_A 104 LFMNDKANTRVARVRCDVM-KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA 182 (595)
T ss_dssp EEEEETTTTEEEEEETTTT-EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEET
T ss_pred EEEEcCCCCEEEEEECCCc-eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEEC
Confidence 3445566778999999887 666644322 245788888 5 9999999885 3468999999
Q ss_pred CCCceEEEEecCCc--eeEEEeCCCEEEEEcCC----------------eEEEEEcCCCceEEecCCCccEEEEEEcCCE
Q 011711 222 HTGQSASVINLGAE--VGSLICEGPWVFVGMPN----------------VVKAWHIESSAEFSLDGPVGEVYSMVVANEM 283 (479)
Q Consensus 222 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~----------------~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~ 283 (479)
++.+....+..+.. ...+.++|+++++.+.+ .+.+.|....+..... ++.
T Consensus 183 ~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~------------Gk~ 250 (595)
T 1fwx_A 183 DKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA------------GDY 250 (595)
T ss_dssp TTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH------------TCS
T ss_pred CCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC------------CCe
Confidence 99999988886433 33455688888876432 2555554333221111 111
Q ss_pred EEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEe-CCCeEEEEECCCCc------------E
Q 011711 284 LFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGS-MDNTIRVWDLDTLE------------A 348 (479)
Q Consensus 284 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs-~dg~I~iwd~~~~~------------~ 348 (479)
... +.|.+.|..+... ...+..+.. .....++.++ |+++++++ .+.+|.++|+.+.+ .
T Consensus 251 ~~i----~~V~VID~~~~~~--~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v 323 (595)
T 1fwx_A 251 QEL----NGVKVVDGRKEAS--SLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV 323 (595)
T ss_dssp EEE----TTEEEEECSGGGC--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred eEE----CcEEEEeCcccCC--ceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence 111 5699999887211 011222221 1233456664 87766554 68899999999753 3
Q ss_pred EEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCC----------CcceEEeccccCc-cceEEEeeeeCCCCCcE
Q 011711 349 VMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTE----------EGNLEVAYTHNED-HGVLALGGLNDPDGNPV 415 (479)
Q Consensus 349 ~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~----------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 415 (479)
+.++.. ......++|+ |...++.-.|++|.+||+.. ...+..+..+..+ +.........+|||+++
T Consensus 324 ~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l 402 (595)
T 1fwx_A 324 VAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWL 402 (595)
T ss_dssp EECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEE
T ss_pred EEEcCC-CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEE
Confidence 444432 2345677777 63344566699999999876 3344444444331 22222333457999944
Q ss_pred EEEEeCC-CeE-----------EEeecCCCc
Q 011711 416 LICSCND-DSV-----------HLYELPSFM 434 (479)
Q Consensus 416 l~s~~~d-g~v-----------~iwd~~~~~ 434 (479)
+++.... .++ .++|+..++
T Consensus 403 ~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 403 VCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred EEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 4433222 233 788885443
No 273
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.92 E-value=0.014 Score=60.86 Aligned_cols=225 Identities=11% Similarity=0.028 Sum_probs=132.9
Q ss_pred CEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--E-EEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeE
Q 011711 244 PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--M-LFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT 320 (479)
Q Consensus 244 ~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~-l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~ 320 (479)
.+++......|+..++.......+......+..++++.. . +++-...+.|+.+++...... ......+........
T Consensus 396 p~Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~-~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-SSYDTVISRDIQAPD 474 (791)
T ss_dssp CEEEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEEECSSCSCCC
T ss_pred cccccccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC-cceeEEEecCCCCcc
Confidence 355666667788888877665555556677888999763 4 444455678888888653210 011222332334556
Q ss_pred EEEEc--C-CEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeC-C-CeEEEEEcCCCcceEEec
Q 011711 321 CLAVG--G-KRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSL-D-NTIKVWIMTEEGNLEVAY 393 (479)
Q Consensus 321 ~l~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~-d-g~i~iwd~~~~~~~~~~~ 393 (479)
.|+++ + +++++-...+.|.+.++........+...-.....|+++ +.+|+.... . +.|...++..........
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 77776 4 555666678899999998655444444444557788886 355555443 3 678888886544333332
Q ss_pred cccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec---cCceEEEEECCCceEEEEcCCCcEEEEEe
Q 011711 394 THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS---RREVRVIETGPDGLFFTGDGTGMLSVWKI 470 (479)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~v~~l~~s~~g~l~sg~~dg~v~vw~~ 470 (479)
........+++ ++.+..++++-...+.|..+++........+.. -.....|++..+.++++-...+.|...+.
T Consensus 555 ~~l~~P~GLav----D~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk 630 (791)
T 3m0c_C 555 ENIQWPNGITL----DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANR 630 (791)
T ss_dssp SSCSCEEEEEE----ETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred CCCCCceEEEE----ecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeC
Confidence 22223334444 466665666666778899999865444333322 23456777755546666667777777764
Q ss_pred ccC
Q 011711 471 LAK 473 (479)
Q Consensus 471 ~~~ 473 (479)
.++
T Consensus 631 ~tG 633 (791)
T 3m0c_C 631 LTG 633 (791)
T ss_dssp TTC
T ss_pred CCC
Confidence 443
No 274
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.92 E-value=0.00082 Score=70.35 Aligned_cols=191 Identities=12% Similarity=0.053 Sum_probs=102.2
Q ss_pred cEEEEEeC-CCCCEEEEEeC-CC----cEEEEECCCC-ceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEE
Q 011711 194 AVSGIALP-LRSDKLYSGSR-DG----TVQLWDCHTG-QSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFS 266 (479)
Q Consensus 194 ~V~~l~~s-~~~~~l~s~s~-Dg----~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~ 266 (479)
.+...+|| |||++||-+.. +| +|+++|+.++ +.+.. .+.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-----~~~----------------------------- 220 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-----KVS----------------------------- 220 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-----CEE-----------------------------
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-----ccc-----------------------------
Confidence 68889999 99998875433 33 4999999887 52210 000
Q ss_pred ecCCCccEEEEEEcCC--EEEEEeCC-----CcEEEEEccCCCCCcccceeeec-CCCCCeEEEEEc--CCEEEEEe---
Q 011711 267 LDGPVGEVYSMVVANE--MLFAGAQD-----GNILVWKGIPNTQNPFQLAALLK-GHTRPVTCLAVG--GKRLYSGS--- 333 (479)
Q Consensus 267 ~~~~~~~v~~~~~~~~--~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~-~h~~~i~~l~~~--~~~l~sgs--- 333 (479)
.....+.|+++ .|+....+ ..|+.+++.++.. +....+. ........+.++ +++|+..+
T Consensus 221 -----~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~---~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~ 292 (751)
T 2xe4_A 221 -----GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQS---EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSP 292 (751)
T ss_dssp -----EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGG---GCEEEEECCCTTCEEEEEECTTSSEEEEEEECS
T ss_pred -----CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCch---hcEEEEecCCCceEEEEEECCCCCEEEEEecCC
Confidence 00123456655 44443333 2577778766432 1111222 222345566775 77766554
Q ss_pred CCCeEEEEECCCC--cE-EEEE-eCCCCCcEEEE-EcCCEEEEEeC-C----CeEEEEEcCCCcceEE-eccccCccceE
Q 011711 334 MDNTIRVWDLDTL--EA-VMTL-NGHTDAPMSLL-CWDQYLLSCSL-D----NTIKVWIMTEEGNLEV-AYTHNEDHGVL 402 (479)
Q Consensus 334 ~dg~I~iwd~~~~--~~-~~~~-~~h~~~v~~~~-~~~~~l~s~s~-d----g~i~iwd~~~~~~~~~-~~~~~~~~~~~ 402 (479)
....|.++|+.++ +. +..+ ........+.. ..++.|+..+. + ..|..+|+.+...... +..+.......
T Consensus 293 ~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~ 372 (751)
T 2xe4_A 293 ETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFME 372 (751)
T ss_dssp SCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEE
T ss_pred CCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEE
Confidence 3446888999875 23 1333 33344556666 33666554443 3 2677777764322222 33333322222
Q ss_pred EEeeeeCCCCCcEEEEEeCCCeEE--Eeec
Q 011711 403 ALGGLNDPDGNPVLICSCNDDSVH--LYEL 430 (479)
Q Consensus 403 ~~~~~~~~~~~~~l~s~~~dg~v~--iwd~ 430 (479)
.+. +.++.++++...++..+ ++++
T Consensus 373 ~~~----~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 373 SIA----VRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEE----ECSSEEEEEEEETTEEEEEEEEC
T ss_pred EEE----EECCEEEEEEEeCCEEEEEEEec
Confidence 222 34555788888888644 5554
No 275
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.85 E-value=0.017 Score=53.00 Aligned_cols=221 Identities=11% Similarity=0.056 Sum_probs=122.3
Q ss_pred eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCC
Q 011711 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESS 262 (479)
Q Consensus 183 ~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~ 262 (479)
+.+..+... .....++|+++++++++-..++.|..||.... ....+..
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~------------------------------ 70 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV------------------------------ 70 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC------------------------------
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC------------------------------
Confidence 445555433 55778999999997777767889999987643 2222211
Q ss_pred ceEEecCCCccEEEEEEcCC-EEEEEe-C-CC-cEEEEEccCCCCCcccceeeecCCCCCeEEEEE-cCCEEEEEe-CCC
Q 011711 263 AEFSLDGPVGEVYSMVVANE-MLFAGA-Q-DG-NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV-GGKRLYSGS-MDN 336 (479)
Q Consensus 263 ~~~~~~~~~~~v~~~~~~~~-~l~~g~-~-dg-~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~-~~~~l~sgs-~dg 336 (479)
......+++.++ .++++. . ++ .|..+|..++.. +...... .......++. .+..++... .++
T Consensus 71 --------~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~---~~~~~~~-~~~~~~g~~~~~~~~~~v~d~~~g 138 (306)
T 2p4o_A 71 --------EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV---ETLLTLP-DAIFLNGITPLSDTQYLTADSYRG 138 (306)
T ss_dssp --------SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE---EEEEECT-TCSCEEEEEESSSSEEEEEETTTT
T ss_pred --------CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE---EEEEeCC-CccccCcccccCCCcEEEEECCCC
Confidence 123566777765 333333 2 22 366666555432 1111111 1122334443 344544444 588
Q ss_pred eEEEEECCCCcE-EEEEe---------CCCCCcEEEEEcCCEEE-EEeCCCeEEEEEcCCCcc---eEEeccccCccceE
Q 011711 337 TIRVWDLDTLEA-VMTLN---------GHTDAPMSLLCWDQYLL-SCSLDNTIKVWIMTEEGN---LEVAYTHNEDHGVL 402 (479)
Q Consensus 337 ~I~iwd~~~~~~-~~~~~---------~h~~~v~~~~~~~~~l~-s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~ 402 (479)
.|..+|..+++. +.... ..-.....+..+++.|+ +-...+.|..+++..... ...+... .....+
T Consensus 139 ~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi 217 (306)
T 2p4o_A 139 AIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDF 217 (306)
T ss_dssp EEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSE
T ss_pred eEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCe
Confidence 999999876532 21111 11123455666676555 445578999999875211 1111111 122334
Q ss_pred EEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceee--eeec-cCceEEEEEC---CCc
Q 011711 403 ALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERG--RIFS-RREVRVIETG---PDG 454 (479)
Q Consensus 403 ~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~-~~~v~~l~~s---~~g 454 (479)
++ +++|+ ++++....+.|.++|.. ++... .+.. ...+++++|. |++
T Consensus 218 ~v----d~dG~-l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~ 269 (306)
T 2p4o_A 218 AF----DVEGN-LYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDC 269 (306)
T ss_dssp EE----BTTCC-EEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTT
T ss_pred EE----CCCCC-EEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCC
Confidence 44 48887 66666667889999975 54422 2222 3568999998 786
No 276
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.74 E-value=0.032 Score=52.81 Aligned_cols=253 Identities=10% Similarity=0.067 Sum_probs=165.3
Q ss_pred CCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEe-CCCEE
Q 011711 168 DECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC-EGPWV 246 (479)
Q Consensus 168 ~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~l 246 (479)
++...+.|-|+.++....+.--.-+++| .+|..+.+|-=. ..++.|+|+++.+.+..+....++....+ +.+.+
T Consensus 45 ~~~~~vvIiDl~~~~~~~rrpi~AdsAI----MnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l 119 (494)
T 1bpo_A 45 GEQAQVVIIDMNDPSNPIRRPISADSAI----MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV 119 (494)
T ss_dssp TTCCEEEEEETTSTTSCEEEECCCSEEE----ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEE
T ss_pred CCCCeEEEEECCCCCcceecccccceee----eCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeE
Confidence 3445899999988755544333333333 478777777655 68999999999999999999888887775 77888
Q ss_pred EEEcCCeEEEEEcCCCce--EEecCC----CccEEEEEEcCC---EEEEEe------CCCcEEEEEccCCCCCcccceee
Q 011711 247 FVGMPNVVKAWHIESSAE--FSLDGP----VGEVYSMVVANE---MLFAGA------QDGNILVWKGIPNTQNPFQLAAL 311 (479)
Q Consensus 247 ~~~~~~~i~v~~~~~~~~--~~~~~~----~~~v~~~~~~~~---~l~~g~------~dg~i~iwd~~~~~~~~~~~~~~ 311 (479)
..-.+..|..|+++.... ..+..| ...|.....+++ .+++|- -.|.+.+|..+.+. .+.
T Consensus 120 ~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ 193 (494)
T 1bpo_A 120 ALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQP 193 (494)
T ss_dssp EEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC------EEE
T ss_pred EEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc------cch
Confidence 888999999999975332 222222 356777777776 444443 24778899987653 567
Q ss_pred ecCCCCCeEEEEEcC-----CEEEEEeCC---CeEEEEECCCC--------cEEEEEe----CCCCCcEEEEEc--CCEE
Q 011711 312 LKGHTRPVTCLAVGG-----KRLYSGSMD---NTIRVWDLDTL--------EAVMTLN----GHTDAPMSLLCW--DQYL 369 (479)
Q Consensus 312 ~~~h~~~i~~l~~~~-----~~l~sgs~d---g~I~iwd~~~~--------~~~~~~~----~h~~~v~~~~~~--~~~l 369 (479)
+++|...-..+..+| ..+..+... ++++|.++... +....+. ...+-..++..+ -..+
T Consensus 194 ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygvi 273 (494)
T 1bpo_A 194 IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV 273 (494)
T ss_dssp ECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEE
T ss_pred heeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEE
Confidence 888877666666653 234444433 78999998543 1111111 123335666666 4678
Q ss_pred EEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCcee
Q 011711 370 LSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMER 436 (479)
Q Consensus 370 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 436 (479)
+.-..-|.|.+||++++.++..-.-..+.+-.. ..+.+.. -+++....|.|.--.++....+
T Consensus 274 yviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t----~~~~~~~-Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 274 FLITKYGYIHLYDLETGTCIYMNRISGETIFVT----APHEATA-GIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEE----EEETTTT-EEEEEETTCEEEEEEECTTTHH
T ss_pred EEEecCceEEEEecccceeeeeecccCCceEEe----cccCCCC-cEEEEccCceEEEEEEccccch
Confidence 888999999999999998876665554443222 1223333 3444557887777766654443
No 277
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.73 E-value=0.034 Score=52.90 Aligned_cols=216 Identities=8% Similarity=0.034 Sum_probs=128.0
Q ss_pred CeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEE-EEeCCCcEEEEECCCCceEEEEecC--C-ceeEEEeCCCEE
Q 011711 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLY-SGSRDGTVQLWDCHTGQSASVINLG--A-EVGSLICEGPWV 246 (479)
Q Consensus 171 ~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~-s~s~Dg~v~vwd~~~~~~~~~~~~~--~-~~~~~~~~~~~l 246 (479)
..|+..++... .....+. .......++|.+.+..|+ +-...+.|..+++..+.....+... . .-.++.+.+..|
T Consensus 96 ~~I~~i~~~~~-~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l 173 (386)
T 3v65_B 96 IDIRQVLPHRS-EYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL 173 (386)
T ss_dssp SCEEEECTTSC-CCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEE
T ss_pred ccceeeccCCC-cEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeE
Confidence 56777777654 3223333 345688999987655554 5456788999999876654444322 1 123344334444
Q ss_pred -EEE-cCCeEEEEEcCCCceEE-ecCCCccEEEEEEcCC--EEEEEe-CC-CcEEEEEccCCCCCcccceeeecCCCCCe
Q 011711 247 -FVG-MPNVVKAWHIESSAEFS-LDGPVGEVYSMVVANE--MLFAGA-QD-GNILVWKGIPNTQNPFQLAALLKGHTRPV 319 (479)
Q Consensus 247 -~~~-~~~~i~v~~~~~~~~~~-~~~~~~~v~~~~~~~~--~l~~g~-~d-g~i~iwd~~~~~~~~~~~~~~~~~h~~~i 319 (479)
++. ..+.|.+.+++...... ..........+++++. .|+... .+ +.|..+++..... .......-...
T Consensus 174 Y~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-----~~~~~~~~~~P 248 (386)
T 3v65_B 174 YWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-----RIIADTHLFWP 248 (386)
T ss_dssp EEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-----EEEECSSCSCE
T ss_pred EEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-----EEEEECCCCCe
Confidence 443 45788888887665433 2334456788899864 444443 34 6788888765432 11122223346
Q ss_pred EEEEEc--CCEE-EEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCCE-EEEEeCCCeEEEEEcCCCcceEEec
Q 011711 320 TCLAVG--GKRL-YSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQY-LLSCSLDNTIKVWIMTEEGNLEVAY 393 (479)
Q Consensus 320 ~~l~~~--~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~ 393 (479)
..|+++ ++.| ++-+..+.|..+|+........+.........+++.+.. +++-...+.|..++..+++....+.
T Consensus 249 nGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 249 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 788886 4444 455567889999987544433344334456677777544 4455567788888865665555444
No 278
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.71 E-value=0.0089 Score=62.50 Aligned_cols=241 Identities=11% Similarity=-0.020 Sum_probs=121.5
Q ss_pred EEEe-ccCCeeE-----eCCCCCeEEEeecCCC-ceeeEEEecccccEEEEEeCCCCCEEEEEeCCC-----cEEEEECC
Q 011711 155 VCYH-WLSGNCV-----KGDECRFWHSWFCGEG-FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDG-----TVQLWDCH 222 (479)
Q Consensus 155 ~c~~-~~~~~~~-----~g~~d~~i~vw~~~~~-~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg-----~v~vwd~~ 222 (479)
..+. +.+..++ .|++...|+++|+.++ ..+...+. .....++|+||++.|+....|. .|.++++.
T Consensus 179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lg 255 (751)
T 2xe4_A 179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMG 255 (751)
T ss_dssp EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETT
T ss_pred eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECC
Confidence 4555 5555555 2344457999999887 42222222 1245688999999888777652 45556655
Q ss_pred CCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEe---CCCcEEEEE
Q 011711 223 TGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGA---QDGNILVWK 297 (479)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~---~dg~i~iwd 297 (479)
+++.... .++. .........+.++++ .|+... ....|+++|
T Consensus 256 t~~~~~~-------------------------lv~~---------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d 301 (751)
T 2xe4_A 256 KLQSEDV-------------------------CLYE---------EHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLD 301 (751)
T ss_dssp SCGGGCE-------------------------EEEE---------CCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred CCchhcE-------------------------EEEe---------cCCCceEEEEEECCCCCEEEEEecCCCCceEEEEE
Confidence 4431100 0010 011223456777777 444433 234678888
Q ss_pred ccCCCCCcccceeeecCCCCCeEEEEEc-CCEEEEEeC-C----CeEEEEECCCCcEEEE-EeCCCC--CcEEEEEcCCE
Q 011711 298 GIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGSM-D----NTIRVWDLDTLEAVMT-LNGHTD--APMSLLCWDQY 368 (479)
Q Consensus 298 ~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~l~sgs~-d----g~I~iwd~~~~~~~~~-~~~h~~--~v~~~~~~~~~ 368 (479)
+.++... ...............++.++ ++.|+..+. + ..|..+|+.++..... +..+.. .+..+.+.++.
T Consensus 302 ~~~~~~~-~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~ 380 (751)
T 2xe4_A 302 LRKGNAH-NTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNY 380 (751)
T ss_dssp SSSCTTC-CCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSE
T ss_pred CCCCCCC-ceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCE
Confidence 8765211 10022223345566777743 666554443 3 3677788775322222 333333 34556666554
Q ss_pred -EEEEeCCCeEE--EEEcC------CCcc-eEEeccccCccceEEEeeee--CCCCCcEEEEEeCC---CeEEEeecCCC
Q 011711 369 -LLSCSLDNTIK--VWIMT------EEGN-LEVAYTHNEDHGVLALGGLN--DPDGNPVLICSCND---DSVHLYELPSF 433 (479)
Q Consensus 369 -l~s~s~dg~i~--iwd~~------~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~d---g~v~iwd~~~~ 433 (479)
+++...++..+ ++++. .... ...+.. ........+.... ++++..++++.+.. ..+..+|+.++
T Consensus 381 lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l-~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~ 459 (751)
T 2xe4_A 381 LVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVM-EEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDH 459 (751)
T ss_dssp EEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCC-CCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTC
T ss_pred EEEEEEeCCEEEEEEEecccccccccCCccceEECC-CCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 55666677655 45541 2222 333321 1112222332111 34665565555433 45777787766
Q ss_pred c
Q 011711 434 M 434 (479)
Q Consensus 434 ~ 434 (479)
+
T Consensus 460 ~ 460 (751)
T 2xe4_A 460 S 460 (751)
T ss_dssp C
T ss_pred c
Confidence 4
No 279
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.69 E-value=0.098 Score=57.08 Aligned_cols=291 Identities=9% Similarity=0.030 Sum_probs=146.0
Q ss_pred CCeEEEeecCCC-ceeeEEEecccccEEEEEeCCC------CCEEEEEeC-CCcEEEEECCCCceEEEEecCC--ceeEE
Q 011711 170 CRFWHSWFCGEG-FTMLAKLEGHKKAVSGIALPLR------SDKLYSGSR-DGTVQLWDCHTGQSASVINLGA--EVGSL 239 (479)
Q Consensus 170 d~~i~vw~~~~~-~~~~~~~~~H~~~V~~l~~s~~------~~~l~s~s~-Dg~v~vwd~~~~~~~~~~~~~~--~~~~~ 239 (479)
.+.+.+++++++ ...+.... -...|.|+++.|. +++++.|.. |++|+|+++.+.+.+.....+. ...++
T Consensus 531 g~~l~~fel~~~~L~~~~~~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si 609 (1158)
T 3ei3_A 531 GRALYYLQIHPQELRQISHTE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSI 609 (1158)
T ss_dssp TTEEEEEEEETTEEEEEEEEE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEE
T ss_pred CCEEEEEEeeCCceeeecccC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEE
Confidence 467777777654 12222222 2568999999753 468999997 9999999999888776666543 22222
Q ss_pred E---e-CCCEEEEE-cCCeEEEEEcC--CCceEE----ecCCCccEEEEEEc--CCEEEEEeCCCcEEEEEccCCCCCcc
Q 011711 240 I---C-EGPWVFVG-MPNVVKAWHIE--SSAEFS----LDGPVGEVYSMVVA--NEMLFAGAQDGNILVWKGIPNTQNPF 306 (479)
Q Consensus 240 ~---~-~~~~l~~~-~~~~i~v~~~~--~~~~~~----~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~ 306 (479)
. . ...++.+| .+|.+..+.++ ++.... ..+ ..++.-..+. +..-+.+..+....+|.-.. . +
T Consensus 610 ~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~-~---l 684 (1158)
T 3ei3_A 610 LMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSNH-K---L 684 (1158)
T ss_dssp EEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESSS-S---E
T ss_pred EEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcCC-c---e
Confidence 2 1 23456666 67776655544 333321 112 1222222222 22222223344444444221 1 1
Q ss_pred cceeeecCCCCCeEEEE-Ec----CCEEEEEeCCCeEEEEECCCCcE--EEEEeCCCCCcEEEEEc--CCEEEEEe----
Q 011711 307 QLAALLKGHTRPVTCLA-VG----GKRLYSGSMDNTIRVWDLDTLEA--VMTLNGHTDAPMSLLCW--DQYLLSCS---- 373 (479)
Q Consensus 307 ~~~~~~~~h~~~i~~l~-~~----~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~h~~~v~~~~~~--~~~l~s~s---- 373 (479)
... .-...++.+++ |+ .+-++.. .++.++|..+...+. ++++.- ...+..++++ .+.++.+.
T Consensus 685 --~~s-~l~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~~~ipL-~~Tprri~y~~~~~~~~v~~~~~~ 759 (1158)
T 3ei3_A 685 --VFS-NVNLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLHIRTVPL-YESPRKICYQEVSQCFGVLSSRIE 759 (1158)
T ss_dssp --EEE-EBSSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEEEEEEEC-SSEEEEEEEEGGGTEEEEEEEEEE
T ss_pred --EEe-ccChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCCeeEEEEeC-CCCceEEEEcCCCCEEEEEEEecc
Confidence 111 11122333333 33 3344433 345688887754322 222221 1233344433 12111111
Q ss_pred ---------------------------------------------CCCeEEEEEcCCCcceEEeccccCc-cceEEEeee
Q 011711 374 ---------------------------------------------LDNTIKVWIMTEEGNLEVAYTHNED-HGVLALGGL 407 (479)
Q Consensus 374 ---------------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~ 407 (479)
.-+.|++.|..+.+.+..+.-...+ ..++.. +.
T Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~-v~ 838 (1158)
T 3ei3_A 760 VQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVS-CK 838 (1158)
T ss_dssp EECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEE-EC
T ss_pred ccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEE-EE
Confidence 0134777777666654433322222 222222 22
Q ss_pred eCCCCCcEEEEEe----------CCCeEEEeecCCCc--eeeeeeccCceEEEEECCCceEEEEcCCCcEEEEEeccCC
Q 011711 408 NDPDGNPVLICSC----------NDDSVHLYELPSFM--ERGRIFSRREVRVIETGPDGLFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 408 ~~~~~~~~l~s~~----------~dg~v~iwd~~~~~--~~~~~~~~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~~~ 474 (479)
+..+.+.+++.|. ..|.|++|++...+ .+.....++++++++--. |+|++|- ..+|++|++..++
T Consensus 839 ~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~-g~Lla~i-g~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 839 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFN-GKLLASI-NSTVRLYEWTTEK 915 (1158)
T ss_dssp CTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEET-TEEEEEE-TTEEEEEEECTTS
T ss_pred EccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeC-CEEEEEc-CCEEEEEECCCCc
Confidence 2233345777775 35889999986432 223333478899987653 4454443 4789999997653
No 280
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.66 E-value=0.02 Score=52.91 Aligned_cols=232 Identities=14% Similarity=0.133 Sum_probs=128.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC
Q 011711 203 RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE 282 (479)
Q Consensus 203 ~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~ 282 (479)
...+++.....+-+.+||+ +|+.+..+..+. ...+ |+ ...+.....
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~-~nnV------------------D~--------------r~~~~l~g~ 84 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTGK-LNNV------------------DI--------------RYDFPLNGK 84 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECCSC-EEEE------------------EE--------------EEEEEETTE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccCCC-cccE------------------EE--------------ecccccCCc
Confidence 4456666677788999999 788777764311 1110 00 011112222
Q ss_pred ---EEEEEe-C--CCcEEEEEccCCCCCcccceee----ecCCCCCeEEEEE--c---CC-EEEEEeCCCeEEEEEC---
Q 011711 283 ---MLFAGA-Q--DGNILVWKGIPNTQNPFQLAAL----LKGHTRPVTCLAV--G---GK-RLYSGSMDNTIRVWDL--- 343 (479)
Q Consensus 283 ---~l~~g~-~--dg~i~iwd~~~~~~~~~~~~~~----~~~h~~~i~~l~~--~---~~-~l~sgs~dg~I~iwd~--- 343 (479)
++++.. . +++|.+|++...... ...+.. +..-...+..+++ + +. ++++...+|.+..|++
T Consensus 85 ~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~ 163 (355)
T 3amr_A 85 KVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKAD 163 (355)
T ss_dssp EEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEEC
T ss_pred eEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeC
Confidence 223333 3 578999987432211 111111 0011144555665 4 33 6888889999999988
Q ss_pred ----CCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCC-----cceEEecc--ccCccceEEEeeeeCC
Q 011711 344 ----DTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEE-----GNLEVAYT--HNEDHGVLALGGLNDP 410 (479)
Q Consensus 344 ----~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~ 410 (479)
.+.+.++++... +.+..+..+ ...|+.+-++.-|..++.+.. ..+..... ....+..++ +...+
T Consensus 164 ~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLa--i~~~~ 240 (355)
T 3amr_A 164 KNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLT--IYYAA 240 (355)
T ss_dssp TTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEE--EEECG
T ss_pred CCCcccceEEEEecCC-CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEE--EEecC
Confidence 244667787754 456667776 579999999877766675422 22222211 112333333 33346
Q ss_pred CCC-cEEEEEeCCCeEEEeecC-CCceeeeeec-----------cCc--eEEEEE---CCCceEEEEcC---------CC
Q 011711 411 DGN-PVLICSCNDDSVHLYELP-SFMERGRIFS-----------RRE--VRVIET---GPDGLFFTGDG---------TG 463 (479)
Q Consensus 411 ~~~-~~l~s~~~dg~v~iwd~~-~~~~~~~~~~-----------~~~--v~~l~~---s~~g~l~sg~~---------dg 463 (479)
+++ ++++++-.+++..+||.. +.+.+..+.- ... |..+.+ -|.|++++-+. +.
T Consensus 241 ~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~Ig~~~~idgv~eTDG~~v~~~~lG~~fP~Gl~V~qDg~n~~~~~~~~q 320 (355)
T 3amr_A 241 DGKGYLMASSQGNSSYAIYDRQGKNKYVADFRITDGPETDGTSDTDGIDVLGFGLGPEYPFGIFVAQDGENIDHGQKANQ 320 (355)
T ss_dssp GGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEECCCSSSCCCCSCCCEEEECSCCSTTCTTCEEEEEESSCEETTEECCC
T ss_pred CCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEecCCCCceeeeccCcceEEccccCCCCCCcEEEEecCCcccCCCCcCc
Confidence 666 455555567899999996 6666666631 111 333334 25676666443 56
Q ss_pred cEEEEEecc
Q 011711 464 MLSVWKILA 472 (479)
Q Consensus 464 ~v~vw~~~~ 472 (479)
..++.++..
T Consensus 321 nFk~v~w~~ 329 (355)
T 3amr_A 321 NFKIVPWER 329 (355)
T ss_dssp EEEEEEHHH
T ss_pred eEEEEEHHH
Confidence 777777643
No 281
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.62 E-value=0.08 Score=55.33 Aligned_cols=264 Identities=14% Similarity=0.166 Sum_probs=142.2
Q ss_pred cccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEe-cCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEec--
Q 011711 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN-LGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLD-- 268 (479)
Q Consensus 192 ~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~-- 268 (479)
...|.++....++ .|..|+.+| +..+|..+.+...... ....+.++...+..+.++..+.+..++..+.+.....
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~Gl~~~~~~~~~~~~~~~~ 139 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQGDTLWLGALNGLYTYQLQSRKLTSFDTR 139 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEETTEEEEEETTEEEEEETTTCCEEEECHH
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEecCCcEEEEcCCcceeEeCCCCeEEEeccC
Confidence 3568888776665 566666665 7889988764332100 1122444433333444454557888998876654431
Q ss_pred ---CCCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceeeecC----CCCCeEEEEEc--CCEEEEEeCCCeE
Q 011711 269 ---GPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKG----HTRPVTCLAVG--GKRLYSGSMDNTI 338 (479)
Q Consensus 269 ---~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~----h~~~i~~l~~~--~~~l~sgs~dg~I 338 (479)
.....|.++..+.+ .|.+|+.+| +..++..+... +... ... ....|.++..+ ++.|..|+. +-+
T Consensus 140 ~~~l~~~~i~~i~~d~~g~lWigt~~G-l~~~~~~~~~~---~~~~-~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl 213 (758)
T 3ott_A 140 RNGLPNNTIYSIIRTKDNQIYVGTYNG-LCRYIPSNGKF---EGIP-LPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYL 213 (758)
T ss_dssp HHCCSCSCEEEEEECTTCCEEEEETTE-EEEEETTTTEE---EEEC-CCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEE
T ss_pred CCCcCCCeEEEEEEcCCCCEEEEeCCC-HhhCccCCCce---EEec-CCCccccccceeEEEEEECCCCEEEEEEC-CCC
Confidence 22456888888755 666677654 77788655431 1111 111 12348888876 566677774 568
Q ss_pred EEEECCCCcEEEEEeCCCCCcEEEEEc-CCEEEEEeCCCeEEEEEcCCCcceEEeccccC----ccceEEEeeeeCCCCC
Q 011711 339 RVWDLDTLEAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNE----DHGVLALGGLNDPDGN 413 (479)
Q Consensus 339 ~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 413 (479)
..+|..+++...........|.++..+ ...|..|+.+ -+.+++..+... ..+..... -......++..+.+|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~~g~ 291 (758)
T 3ott_A 214 FQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTDN-GLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQEHN 291 (758)
T ss_dssp EEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEETT-EEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECTTCC
T ss_pred eEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEeCC-ceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcCCCC
Confidence 889988765432211122346677666 4456666654 588888765433 22221111 0111223344467776
Q ss_pred cEEEEEeCCCeEEEeecCCCceeeee------eccCceEEEEECCCceEEEEcCCCcEEEEE
Q 011711 414 PVLICSCNDDSVHLYELPSFMERGRI------FSRREVRVIETGPDGLFFTGDGTGMLSVWK 469 (479)
Q Consensus 414 ~~l~s~~~dg~v~iwd~~~~~~~~~~------~~~~~v~~l~~s~~g~l~sg~~dg~v~vw~ 469 (479)
|-.|+..| +.++.....-..... .....|.++.-..+|.|-.|+.+| +..++
T Consensus 292 --lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~ 349 (758)
T 3ott_A 292 --IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFT 349 (758)
T ss_dssp --EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEES
T ss_pred --EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeec
Confidence 44455556 544433221111110 013468899888888444455555 44444
No 282
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.60 E-value=0.041 Score=50.36 Aligned_cols=214 Identities=9% Similarity=-0.002 Sum_probs=119.4
Q ss_pred CeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCC--cEEEEECCCCceEEEE
Q 011711 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDG--TVQLWDCHTGQSASVI 230 (479)
Q Consensus 153 ~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg--~v~vwd~~~~~~~~~~ 230 (479)
..++.......+++....+.|..||.+... ...+. -......+++.++++++++..... .|..+|..+++.....
T Consensus 35 egia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~ 111 (306)
T 2p4o_A 35 ENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL 111 (306)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred ceEEECCCCCEEEEeCCCCeEEEECCCCce--EEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEE
Confidence 355665655556666678899999987552 22222 235688999999999666554332 4777787888765444
Q ss_pred ecCC--ceeEEE-eCCC-EEEEE-cCCeEEEEEcCCCc--eEEe---------cCCCccEEEEEEcCCEE-EEEeCCCcE
Q 011711 231 NLGA--EVGSLI-CEGP-WVFVG-MPNVVKAWHIESSA--EFSL---------DGPVGEVYSMVVANEML-FAGAQDGNI 293 (479)
Q Consensus 231 ~~~~--~~~~~~-~~~~-~l~~~-~~~~i~v~~~~~~~--~~~~---------~~~~~~v~~~~~~~~~l-~~g~~dg~i 293 (479)
.... ....+. ..+. .+++. .++.|..+|..++. .... .......+.+....+.| ++-...+.|
T Consensus 112 ~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I 191 (306)
T 2p4o_A 112 TLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLL 191 (306)
T ss_dssp ECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEE
T ss_pred eCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEE
Confidence 3321 111121 2333 34444 47888888877542 2110 11122345565555544 455567899
Q ss_pred EEEEccC-CCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEE--EEeCCCCCcEEEEEc---
Q 011711 294 LVWKGIP-NTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVM--TLNGHTDAPMSLLCW--- 365 (479)
Q Consensus 294 ~iwd~~~-~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~--~~~~h~~~v~~~~~~--- 365 (479)
..+++.. +.....+..... .....++++ |+++++....+.|.++|.. ++... .+........++++.
T Consensus 192 ~~~~~~~~g~~~~~~~~~~~----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~ 266 (306)
T 2p4o_A 192 LRIPVDSTDKPGEPEIFVEQ----TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTE 266 (306)
T ss_dssp EEEEBCTTSCBCCCEEEEES----CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCST
T ss_pred EEEEeCCCCCCCccEEEecc----CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEeccc
Confidence 9999875 221111111111 233456665 7666666667899999975 55532 233333456777764
Q ss_pred --CCEEEEEeC
Q 011711 366 --DQYLLSCSL 374 (479)
Q Consensus 366 --~~~l~s~s~ 374 (479)
++.|+.++.
T Consensus 267 ~d~~~LyVt~~ 277 (306)
T 2p4o_A 267 GDCTAIYVVTN 277 (306)
T ss_dssp TTTTEEEEEEC
T ss_pred CCCCEEEEECC
Confidence 245554444
No 283
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.56 E-value=0.021 Score=52.10 Aligned_cols=223 Identities=12% Similarity=0.115 Sum_probs=115.8
Q ss_pred CCEEEEEe-CC-----CcEEEEECCCCceEEEEecCCc---eeEEEeCCCEEEEEc-C-----CeEEEEEcCCCc---eE
Q 011711 204 SDKLYSGS-RD-----GTVQLWDCHTGQSASVINLGAE---VGSLICEGPWVFVGM-P-----NVVKAWHIESSA---EF 265 (479)
Q Consensus 204 ~~~l~s~s-~D-----g~v~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~-~-----~~i~v~~~~~~~---~~ 265 (479)
+..++.|+ .+ ..+.++|+.+++-...-....+ ......++.+++.|. + +.+.+||+.+.. -.
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~ 94 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWY 94 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCE
T ss_pred CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeE
Confidence 44555555 22 3688899887764433222211 122334565555543 2 478999998876 33
Q ss_pred Eec---CCCccEEEEEEcCCEEEEEeCC-----CcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCC--
Q 011711 266 SLD---GPVGEVYSMVVANEMLFAGAQD-----GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMD-- 335 (479)
Q Consensus 266 ~~~---~~~~~v~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~d-- 335 (479)
... ........+...+.+++.|+.+ ..+.+||..++. +..+..+......-.++..++..++.|+.+
T Consensus 95 ~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~---W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 171 (301)
T 2vpj_A 95 SVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQ---WSMLGDMQTAREGAGLVVASGVIYCLGGYDGL 171 (301)
T ss_dssp EECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE---EEEEEECSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred ECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCe---EEECCCCCCCcccceEEEECCEEEEECCCCCC
Confidence 221 1222223333444466666643 358888887654 333333332233334444567777777654
Q ss_pred ---CeEEEEECCCCcEEEE--EeCCCCCcEEEEEcCCEEEEEeCC-----CeEEEEEcCCCcceEEeccccCccceEEEe
Q 011711 336 ---NTIRVWDLDTLEAVMT--LNGHTDAPMSLLCWDQYLLSCSLD-----NTIKVWIMTEEGNLEVAYTHNEDHGVLALG 405 (479)
Q Consensus 336 ---g~I~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 405 (479)
..+.+||+.+.+-... +.........+...+..++.|+.+ ..+.+||+.+..-.. +.............
T Consensus 172 ~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p~~r~~~~~~ 250 (301)
T 2vpj_A 172 NILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT-VTSMTTPRCYVGAT 250 (301)
T ss_dssp CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEE
T ss_pred cccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEE-CCCCCCcccceeEE
Confidence 4688999987654322 111111123344446666777664 468899987764222 22111111111111
Q ss_pred eeeCCCCCcEEEEEeCC-----CeEEEeecCCCc
Q 011711 406 GLNDPDGNPVLICSCND-----DSVHLYELPSFM 434 (479)
Q Consensus 406 ~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~ 434 (479)
. .+++ +++.|+.+ ..|.+||+.+.+
T Consensus 251 ~---~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 251 V---LRGR-LYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp E---ETTE-EEEECCBCSSSBEEEEEEEETTTTE
T ss_pred E---ECCE-EEEEcCcCCCcccccEEEEcCCCCe
Confidence 1 2444 66666654 457888887643
No 284
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.54 E-value=0.16 Score=55.47 Aligned_cols=351 Identities=11% Similarity=0.037 Sum_probs=182.5
Q ss_pred CCCCCCCCCC------ceeccCCCC-CCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccC--C
Q 011711 92 SPPSYNCPKN------NVRVSSGSE-EGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS--G 162 (479)
Q Consensus 92 ~i~~~~~s~~------g~~las~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~--~ 162 (479)
.|.++++++. +.++|.|.. |++++|.++.+... .....+ + . ...+..+|..... .
T Consensus 555 evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~----~~~~~L--~-~---------~~~p~si~l~~~~~~~ 618 (1158)
T 3ei3_A 555 EVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFEL----LHKEML--G-G---------EIIPRSILMTTFESSH 618 (1158)
T ss_dssp CEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCE----EEEEEC--C-S---------SCCEEEEEEEEETTEE
T ss_pred ceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCe----EEEEEC--C-C---------CCCCcEEEEEEeCCCc
Confidence 4556666542 478888886 99999998753211 000000 0 0 0122334444333 2
Q ss_pred eeEeCCCCCeEEEeecC--CCceee---EEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-Cce
Q 011711 163 NCVKGDECRFWHSWFCG--EGFTML---AKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG-AEV 236 (479)
Q Consensus 163 ~~~~g~~d~~i~vw~~~--~~~~~~---~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~-~~~ 236 (479)
.+..|-.||.+..+.++ ++ ++. ..+-| ..+|.=..+...+..-+-+..+....++.-+ ++... .+.. ..+
T Consensus 619 ~L~igl~dG~l~~~~~d~~tg-~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~-s~l~~~~v 694 (1158)
T 3ei3_A 619 YLLCALGDGALFYFGLNIETG-LLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVF-SNVNLKEV 694 (1158)
T ss_dssp EEEEEETTSEEEEEEECTTTC-CEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEE-EEBSSSCC
T ss_pred EEEEEeCCCeEEEEEEcCCCC-ccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEE-eccChHHh
Confidence 56778888887666654 33 111 12333 3455444443334333333334444444433 33222 1222 222
Q ss_pred eEEEe-----CCCEEEEEcCCeEEEEEcCCCceEE--ecCCCccEEEEEEcCC--EEEEEeCC-----------------
Q 011711 237 GSLIC-----EGPWVFVGMPNVVKAWHIESSAEFS--LDGPVGEVYSMVVANE--MLFAGAQD----------------- 290 (479)
Q Consensus 237 ~~~~~-----~~~~l~~~~~~~i~v~~~~~~~~~~--~~~~~~~v~~~~~~~~--~l~~g~~d----------------- 290 (479)
..+.+ -..-++...++.+++..++...... ...-...+..++++++ .++++..+
T Consensus 695 ~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 774 (1158)
T 3ei3_A 695 NYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSA 774 (1158)
T ss_dssp CEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCH
T ss_pred ceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhh
Confidence 22222 1234445556678888876543321 1123346677777765 33332211
Q ss_pred --------------------------------CcEEEEEccCCCCCcccceeeec-CCCCCeEEEEE---c---CCEEEE
Q 011711 291 --------------------------------GNILVWKGIPNTQNPFQLAALLK-GHTRPVTCLAV---G---GKRLYS 331 (479)
Q Consensus 291 --------------------------------g~i~iwd~~~~~~~~~~~~~~~~-~h~~~i~~l~~---~---~~~l~s 331 (479)
+.|++.|..+. +.+..+. .....+.|++. . ..++++
T Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~-----~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvV 849 (1158)
T 3ei3_A 775 STQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTF-----EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIV 849 (1158)
T ss_dssp HHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTC-----CEEEEEECCTTEEEEEEEEECCTTCCCCEEEE
T ss_pred hhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCC-----eEEEEEeCCCCcceEEEEEEEEccCCCEEEEE
Confidence 12344443322 1222221 12233455543 2 468888
Q ss_pred Ee----------CCCeEEEEECCCCcEEEEE-eCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccccCccc
Q 011711 332 GS----------MDNTIRVWDLDTLEAVMTL-NGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHG 400 (479)
Q Consensus 332 gs----------~dg~I~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 400 (479)
|+ ..|.|++|++..++..... ....+.+.++...+.+|+++- ..+|++|++...+.+......-..+.
T Consensus 850 GTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~ 928 (1158)
T 3ei3_A 850 GTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASI-NSTVRLYEWTTEKELRTECNHYNNIM 928 (1158)
T ss_dssp EEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEETTEEEEEE-TTEEEEEEECTTSCEEEEEEECCCSC
T ss_pred EeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCCEEEEEc-CCEEEEEECCCCceEEEEeeccccEE
Confidence 86 3588999998754332211 123677899887766666655 47899999987654442111111122
Q ss_pred eEEEeeeeCCCCCcEEEEEeCCCeEEEeecC--CCcee--eeeeccCceEEEEECCCceEEEEcCCCcEEEEEeccC
Q 011711 401 VLALGGLNDPDGNPVLICSCNDDSVHLYELP--SFMER--GRIFSRREVRVIETGPDGLFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 401 ~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~--~~~~~~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~~ 473 (479)
...+. ..++ +++.|..-..|.++..+ ..+.. ..-.....++++.+-.++.++.++.+|.|.+......
T Consensus 929 ~~~l~----~~~~-~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 929 ALYLK----TKGD-FILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp EEEEE----EETT-EEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECTT
T ss_pred EEEEe----ccCC-EEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCCC
Confidence 22221 2344 67778777777776543 22222 1112366788888887778888999999999998764
No 285
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.53 E-value=0.06 Score=50.38 Aligned_cols=216 Identities=9% Similarity=0.041 Sum_probs=127.0
Q ss_pred CeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEE-EEeCCCcEEEEECCCCceEEEEecC-Cce--eEEEeCCCEE
Q 011711 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLY-SGSRDGTVQLWDCHTGQSASVINLG-AEV--GSLICEGPWV 246 (479)
Q Consensus 171 ~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~-s~s~Dg~v~vwd~~~~~~~~~~~~~-~~~--~~~~~~~~~l 246 (479)
..|+..++... .....+. ....+..++|++.+..|+ +-...+.|..+++..+.....+..+ ... .++.+.+..|
T Consensus 53 ~~I~~i~~~g~-~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l 130 (349)
T 3v64_C 53 IDIRQVLPHRS-EYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL 130 (349)
T ss_dssp SCEEEECTTSC-CEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred cceEEEeCCCC-eeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeE
Confidence 45666776554 3333333 334578999987665555 4456788999999876654444322 122 2333334444
Q ss_pred -EEE-cCCeEEEEEcCCCceEEe-cCCCccEEEEEEcCC--EEEEE-eCC-CcEEEEEccCCCCCcccceeeecCCCCCe
Q 011711 247 -FVG-MPNVVKAWHIESSAEFSL-DGPVGEVYSMVVANE--MLFAG-AQD-GNILVWKGIPNTQNPFQLAALLKGHTRPV 319 (479)
Q Consensus 247 -~~~-~~~~i~v~~~~~~~~~~~-~~~~~~v~~~~~~~~--~l~~g-~~d-g~i~iwd~~~~~~~~~~~~~~~~~h~~~i 319 (479)
++. ..+.|.+.+++......+ .........+++++. .|+.. ..+ +.|..+++..... .......-...
T Consensus 131 y~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-----~~~~~~~~~~P 205 (349)
T 3v64_C 131 YWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-----RIIADTHLFWP 205 (349)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-----EESCCSSCSCE
T ss_pred EEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-----EEEEECCCCCc
Confidence 443 567899999887654433 334456788999864 44444 444 7888888765432 11112223346
Q ss_pred EEEEEc--CCEEEE-EeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCCEEE-EEeCCCeEEEEEcCCCcceEEec
Q 011711 320 TCLAVG--GKRLYS-GSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLL-SCSLDNTIKVWIMTEEGNLEVAY 393 (479)
Q Consensus 320 ~~l~~~--~~~l~s-gs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~ 393 (479)
..|+++ ++.|+. -+..+.|..+|+........+.........+++.+..|+ +-...+.|..++..+++....+.
T Consensus 206 nGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 206 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred ceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 788886 555544 456678999998764433334333445566776755444 44456788888865555544443
No 286
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.51 E-value=0.11 Score=52.88 Aligned_cols=221 Identities=9% Similarity=-0.002 Sum_probs=132.2
Q ss_pred CEEEEEcCCeEEEEEcCCCceEEe--cCCCccEEEEEEcCC--EE-EEEeCCCcEEEEEccCCCCCcccceeeecCCCCC
Q 011711 244 PWVFVGMPNVVKAWHIESSAEFSL--DGPVGEVYSMVVANE--ML-FAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (479)
Q Consensus 244 ~~l~~~~~~~i~v~~~~~~~~~~~--~~~~~~v~~~~~~~~--~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~ 318 (479)
.+|+.+....|+..++++...... .........+++++. .| ++-..++.|..+++..... ..........
T Consensus 7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-----~~v~~~g~~~ 81 (628)
T 4a0p_A 7 AFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-----EHVVEFGLDY 81 (628)
T ss_dssp CEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEECSSCSC
T ss_pred cEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-----EEEEeCCCCC
Confidence 355555667777777776543221 123346788999864 44 4555678899998865432 1222222234
Q ss_pred eEEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeC--CCeEEEEEcCCCcceEE
Q 011711 319 VTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSL--DNTIKVWIMTEEGNLEV 391 (479)
Q Consensus 319 i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~--dg~i~iwd~~~~~~~~~ 391 (479)
...|+++ ++++++-...+.|.+.+++.......+...-.....++.+ ...|+.... .+.|...++........
T Consensus 82 P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l 161 (628)
T 4a0p_A 82 PEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL 161 (628)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred cceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE
Confidence 5677775 4455666667899999987654333333344456788877 345555542 56788888765443332
Q ss_pred eccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCceEEEEcCCCcEEEEEec
Q 011711 392 AYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDGLFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~ 471 (479)
. ........+++ +++++.+.++-...+.|..+|+.................+++..+.++++-...+.|...|..
T Consensus 162 ~-~~~~~P~Glal----D~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~ 236 (628)
T 4a0p_A 162 V-PNVGRANGLTI----DYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKT 236 (628)
T ss_dssp E-CSCSSEEEEEE----ETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred E-CCCCCcceEEE----ccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEECCEEEEecCCCCEEEEEECC
Confidence 2 22222334444 477665777777788999999876444211122345667888765466777678888888765
Q ss_pred cCC
Q 011711 472 AKP 474 (479)
Q Consensus 472 ~~~ 474 (479)
++.
T Consensus 237 tg~ 239 (628)
T 4a0p_A 237 SGQ 239 (628)
T ss_dssp TCC
T ss_pred CCC
Confidence 544
No 287
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.51 E-value=0.024 Score=51.74 Aligned_cols=216 Identities=11% Similarity=0.079 Sum_probs=110.5
Q ss_pred CeEEEEEcCCCceEEec---CCCccEEEEEEcCCEEEEEeCC-----CcEEEEEccCCCCCcccceeeecCCCCCeEEEE
Q 011711 252 NVVKAWHIESSAEFSLD---GPVGEVYSMVVANEMLFAGAQD-----GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLA 323 (479)
Q Consensus 252 ~~i~v~~~~~~~~~~~~---~~~~~v~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~ 323 (479)
+.+.+||+.+.+-..+. ........+...+.+++.|+.+ ..+.+||..++....++....+......-.++.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~ 110 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT 110 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence 46788888877644332 1122222333444466667654 468899987765111222222222223333444
Q ss_pred EcCCEEEEEeCC-----CeEEEEECCCCcEEEE--EeCCCCCcEEEEEcCCEEEEEeCC-----CeEEEEEcCCCcceEE
Q 011711 324 VGGKRLYSGSMD-----NTIRVWDLDTLEAVMT--LNGHTDAPMSLLCWDQYLLSCSLD-----NTIKVWIMTEEGNLEV 391 (479)
Q Consensus 324 ~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~ 391 (479)
.++..++.|+.+ ..+.+||+.+.+-... +.............+..++.|+.+ ..+.+||+.+..-..
T Consensus 111 ~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~- 189 (301)
T 2vpj_A 111 LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN- 189 (301)
T ss_dssp ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEE-
T ss_pred ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEe-
Confidence 567777777643 3688999887654332 221122223334456666777654 458889987654222
Q ss_pred eccccCccceEEEeeeeCCCCCcEEEEEeCC-----CeEEEeecCCCcee--eeeeccCceEEEEECCCc-eEEEEcCC-
Q 011711 392 AYTHNEDHGVLALGGLNDPDGNPVLICSCND-----DSVHLYELPSFMER--GRIFSRREVRVIETGPDG-LFFTGDGT- 462 (479)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~--~~~~~~~~v~~l~~s~~g-~l~sg~~d- 462 (479)
+.............. .++. +++.|+.+ ..+.+||+.+.+-. ..+.....-.+++.. ++ +++.|+.+
T Consensus 190 ~~~~p~~r~~~~~~~---~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~ 264 (301)
T 2vpj_A 190 VTPMATKRSGAGVAL---LNDH-IYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL-RGRLYAIAGYDG 264 (301)
T ss_dssp ECCCSSCCBSCEEEE---ETTE-EEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBCS
T ss_pred CCCCCcccccceEEE---ECCE-EEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE-CCEEEEEcCcCC
Confidence 221111111111111 2344 77777654 46899998875432 222211111222222 44 66777665
Q ss_pred ----CcEEEEEeccC
Q 011711 463 ----GMLSVWKILAK 473 (479)
Q Consensus 463 ----g~v~vw~~~~~ 473 (479)
..|.+||..+.
T Consensus 265 ~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 265 NSLLSSIECYDPIID 279 (301)
T ss_dssp SSBEEEEEEEETTTT
T ss_pred CcccccEEEEcCCCC
Confidence 35677776543
No 288
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.49 E-value=0.023 Score=51.94 Aligned_cols=213 Identities=16% Similarity=0.143 Sum_probs=109.9
Q ss_pred CcEEEEECCCCceEEEEecCCc---eeEEEeCCCEEEEEc------CCeEEEEEcCCCceEEec---CCCccEEEEEEcC
Q 011711 214 GTVQLWDCHTGQSASVINLGAE---VGSLICEGPWVFVGM------PNVVKAWHIESSAEFSLD---GPVGEVYSMVVAN 281 (479)
Q Consensus 214 g~v~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~------~~~i~v~~~~~~~~~~~~---~~~~~v~~~~~~~ 281 (479)
..+..+|+.+.+-...-....+ ......++.+++.|. .+.+.+||..+.+-.... ..........+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~ 109 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNG 109 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETT
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECC
Confidence 3578888887764443222221 122333555555543 246888998887654332 1222223333444
Q ss_pred CEEEEEeCCC-----cEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCC-------CeEEEEECCCCcEE
Q 011711 282 EMLFAGAQDG-----NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMD-------NTIRVWDLDTLEAV 349 (479)
Q Consensus 282 ~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~d-------g~I~iwd~~~~~~~ 349 (479)
.+++.|+.++ .+.+||+.++. +.....+........+...++..++.|+.+ ..+.+||+.+.+-.
T Consensus 110 ~iyv~GG~~~~~~~~~~~~~d~~~~~---W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 110 LLYAVGGFDGSTGLSSVEAYNIKSNE---WFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp EEEEEEEECSSCEEEEEEEEETTTTE---EEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred EEEEEcCCCCCccCceEEEEeCCCCe---EeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 4666676553 47788877654 222322222223333444567777776542 45889999876543
Q ss_pred EE--EeCCCCCcEEEEEcCCEEEEEeCC-----CeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCC
Q 011711 350 MT--LNGHTDAPMSLLCWDQYLLSCSLD-----NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND 422 (479)
Q Consensus 350 ~~--~~~h~~~v~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 422 (479)
.. +.........+...+.+++.|+.+ ..+.+||+.+..-. .+.............. .+++ +++.|+.+
T Consensus 187 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~r~~~~~~~---~~~~-i~v~GG~~ 261 (302)
T 2xn4_A 187 YIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWR-QVADMNMCRRNAGVCA---VNGL-LYVVGGDD 261 (302)
T ss_dssp EECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEE-EECCCSSCCBSCEEEE---ETTE-EEEECCBC
T ss_pred ECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEe-eCCCCCCccccCeEEE---ECCE-EEEECCcC
Confidence 22 111111223344456677777664 46889998765422 2222111111111111 2444 66667654
Q ss_pred C-----eEEEeecCCCc
Q 011711 423 D-----SVHLYELPSFM 434 (479)
Q Consensus 423 g-----~v~iwd~~~~~ 434 (479)
+ .+.+||+.+.+
T Consensus 262 ~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 262 GSCNLASVEYYNPTTDK 278 (302)
T ss_dssp SSSBCCCEEEEETTTTE
T ss_pred CCcccccEEEEcCCCCe
Confidence 3 48888887653
No 289
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.41 E-value=0.00074 Score=69.87 Aligned_cols=223 Identities=11% Similarity=0.026 Sum_probs=123.1
Q ss_pred EEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEE-eCCCcEEEEEccCCCCCcccceeeecCCCCCeEE
Q 011711 245 WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAG-AQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (479)
Q Consensus 245 ~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~ 321 (479)
+++....+.|+..++.+.....+......+..++|++. .|+.+ ...+.|+.+++...... ......+.........
T Consensus 379 ~ll~~~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~-~~~~~~i~~~~~~P~g 457 (699)
T 1n7d_A 379 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-SSYDTVISRDIQAPDG 457 (699)
T ss_dssp CBCCCCTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC--CCCCCBCCSCC--CCC
T ss_pred eEEecCccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCC-cceEEEEeCCCCCcce
Confidence 34445556788888877665544444455677888753 55554 45678999998751100 0001111111122345
Q ss_pred EEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEe-CC-CeEEEEEcCCCcceEEecc
Q 011711 322 LAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCS-LD-NTIKVWIMTEEGNLEVAYT 394 (479)
Q Consensus 322 l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s-~d-g~i~iwd~~~~~~~~~~~~ 394 (479)
|+++ ++++++-...+.|.++++........+.........++++ +.+|+.+. .. +.|..+++...........
T Consensus 458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~ 537 (699)
T 1n7d_A 458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE 537 (699)
T ss_dssp EECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCS
T ss_pred EEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeC
Confidence 6664 4455555567899999987654433333222345566665 34444333 22 6787777654332222212
Q ss_pred ccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec---cCceEEEEECCCceEEEEcCCCcEEEEEec
Q 011711 395 HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS---RREVRVIETGPDGLFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~ 471 (479)
.......+++ +|++..++++-...+.|..+++........+.. ......|++..++++++....+.|..++..
T Consensus 538 ~l~~PnGlav----d~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~ 613 (699)
T 1n7d_A 538 NIQWPNGITL----DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL 613 (699)
T ss_dssp SCSSCCCEEE----CTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETT
T ss_pred CCCCccEEEE----eccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEcc
Confidence 1222334555 577666777777888999999875332222211 233456666666666677778889888854
Q ss_pred c
Q 011711 472 A 472 (479)
Q Consensus 472 ~ 472 (479)
+
T Consensus 614 ~ 614 (699)
T 1n7d_A 614 T 614 (699)
T ss_dssp T
T ss_pred C
Confidence 3
No 290
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.41 E-value=0.17 Score=52.79 Aligned_cols=219 Identities=9% Similarity=0.040 Sum_probs=125.7
Q ss_pred CCCcEEEEECCCCceEEEEecCCceeEEEeC--CCEEE-EE-cCCeEEEEEcCCC-----ceEEecCCCccEEEEEEc--
Q 011711 212 RDGTVQLWDCHTGQSASVINLGAEVGSLICE--GPWVF-VG-MPNVVKAWHIESS-----AEFSLDGPVGEVYSMVVA-- 280 (479)
Q Consensus 212 ~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~l~-~~-~~~~i~v~~~~~~-----~~~~~~~~~~~v~~~~~~-- 280 (479)
....|+..++...+....+........+..+ +..|+ +. ..+.|+.+++... ....+.........|+++
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~ 481 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 481 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence 3456888888877666655555555555552 34444 43 4578888888753 122233233445567766
Q ss_pred CC-EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEe-C-CCeEEEEECCCCcEEEEEeCC
Q 011711 281 NE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGS-M-DNTIRVWDLDTLEAVMTLNGH 355 (479)
Q Consensus 281 ~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs-~-dg~I~iwd~~~~~~~~~~~~h 355 (479)
.. ++++-...+.|.+.++..... ...+.........|+++ +..|+... . .+.|...++........+...
T Consensus 482 ~~~LY~tD~~~~~I~v~~ldG~~~-----~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~ 556 (791)
T 3m0c_C 482 HSNIYWTDSVLGTVSVADTKGVKR-----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 556 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSE-----EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS
T ss_pred CCcEEEEecCCCeEEEEeCCCCeE-----EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC
Confidence 33 455556678899999875431 12222334457888886 45555544 2 378999998765444444433
Q ss_pred CCCcEEEEEc--CCEEEEE-eCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC
Q 011711 356 TDAPMSLLCW--DQYLLSC-SLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (479)
Q Consensus 356 ~~~v~~~~~~--~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 432 (479)
-.....|+++ +..|+.+ ...+.|...++..............-.....+.. .+..++++-...+.|...|..+
T Consensus 557 l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav----~~~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 557 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV----FEDKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE----ETTEEEEEETTTTEEEEEETTT
T ss_pred CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE----eCCEEEEEECCCCEEEEEeCCC
Confidence 3557777777 5555544 4567899999865544333332211112233331 2334777777778888888777
Q ss_pred Cceeeee
Q 011711 433 FMERGRI 439 (479)
Q Consensus 433 ~~~~~~~ 439 (479)
++.+..+
T Consensus 633 G~~~~~l 639 (791)
T 3m0c_C 633 GSDVNLL 639 (791)
T ss_dssp CCCCEEE
T ss_pred CcceEEe
Confidence 6555444
No 291
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.36 E-value=0.025 Score=51.65 Aligned_cols=212 Identities=11% Similarity=0.131 Sum_probs=105.5
Q ss_pred eEEEEEcCCCceEEec---CCCccEEEEEEcCCEEEEEeCC-----CcEEEEEccCCCCCcccceeeecCCCCCeEEEEE
Q 011711 253 VVKAWHIESSAEFSLD---GPVGEVYSMVVANEMLFAGAQD-----GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV 324 (479)
Q Consensus 253 ~i~v~~~~~~~~~~~~---~~~~~v~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~ 324 (479)
.+..||+.+..-..+. .....-..+...+.+++.|+.+ ..+.+||..+.. ++....+......-....+
T Consensus 31 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~---W~~~~~~p~~r~~~~~~~~ 107 (302)
T 2xn4_A 31 SVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQ---WTSVANMRDRRSTLGAAVL 107 (302)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTE---EEEECCCSSCCBSCEEEEE
T ss_pred cEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCc---eeeCCCCCccccceEEEEE
Confidence 4566777766543321 1111122233333366666654 358888887654 2333323322333344455
Q ss_pred cCCEEEEEeCCC-----eEEEEECCCCcEEEEE--eCCCCCcEEEEEcCCEEEEEeCC-------CeEEEEEcCCCcceE
Q 011711 325 GGKRLYSGSMDN-----TIRVWDLDTLEAVMTL--NGHTDAPMSLLCWDQYLLSCSLD-------NTIKVWIMTEEGNLE 390 (479)
Q Consensus 325 ~~~~l~sgs~dg-----~I~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~l~s~s~d-------g~i~iwd~~~~~~~~ 390 (479)
++..++.|+.++ .+.+||+.+.+-...- .............+..++.|+.+ ..+.+||+.+..-..
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~ 187 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTY 187 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE
Confidence 677777787653 5788998876543221 11111123333446666666542 358889987654222
Q ss_pred EeccccCccceEEEeeeeCCCCCcEEEEEeCC-----CeEEEeecCCCcee--eeeeccCceEEEEECCCc-eEEEEcCC
Q 011711 391 VAYTHNEDHGVLALGGLNDPDGNPVLICSCND-----DSVHLYELPSFMER--GRIFSRREVRVIETGPDG-LFFTGDGT 462 (479)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~--~~~~~~~~v~~l~~s~~g-~l~sg~~d 462 (479)
+.............. .+++ +++.|+.+ ..+.+||+.+.+-. ..+.....-..++.. ++ +++.|+.+
T Consensus 188 -~~~~p~~r~~~~~~~---~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~i~v~GG~~ 261 (302)
T 2xn4_A 188 -IAEMSTRRSGAGVGV---LNNL-LYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV-NGLLYVVGGDD 261 (302)
T ss_dssp -ECCCSSCCBSCEEEE---ETTE-EEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBC
T ss_pred -CCCCccccccccEEE---ECCE-EEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE-CCEEEEECCcC
Confidence 211111111111111 2444 67777654 46889998775322 212111111122222 44 77777765
Q ss_pred C-----cEEEEEeccC
Q 011711 463 G-----MLSVWKILAK 473 (479)
Q Consensus 463 g-----~v~vw~~~~~ 473 (479)
+ .|.+||..+.
T Consensus 262 ~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 262 GSCNLASVEYYNPTTD 277 (302)
T ss_dssp SSSBCCCEEEEETTTT
T ss_pred CCcccccEEEEcCCCC
Confidence 4 4788887653
No 292
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.34 E-value=0.14 Score=51.91 Aligned_cols=222 Identities=11% Similarity=0.037 Sum_probs=122.5
Q ss_pred EEEEEcCCeEEEEEcCCCc--eEEecCCCccEEEEEEcCC--EEEEE-eCCCcEEEEEccCCCCCcccceeeecCCCCCe
Q 011711 245 WVFVGMPNVVKAWHIESSA--EFSLDGPVGEVYSMVVANE--MLFAG-AQDGNILVWKGIPNTQNPFQLAALLKGHTRPV 319 (479)
Q Consensus 245 ~l~~~~~~~i~v~~~~~~~--~~~~~~~~~~v~~~~~~~~--~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i 319 (479)
++.-...+.|+..++.... .............+++++. .|+.+ ...+.|..+++..... ....+.......
T Consensus 11 ~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~----~~~v~~~~~~~P 86 (619)
T 3s94_A 11 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES----VQNVVVSGLLSP 86 (619)
T ss_dssp CEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEEECSSCSCE
T ss_pred eEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc----eEEEEeCCCCCc
Confidence 4445556677777776542 2222334456778888853 55544 4567888888765421 112222223467
Q ss_pred EEEEEc--CC-EEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeC--CCeEEEEEcCCCcceEEe
Q 011711 320 TCLAVG--GK-RLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSL--DNTIKVWIMTEEGNLEVA 392 (479)
Q Consensus 320 ~~l~~~--~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~--dg~i~iwd~~~~~~~~~~ 392 (479)
..|+++ ++ ++++-...+.|.+.+++.......+...-.....++++ +.+|+.... .+.|...+++........
T Consensus 87 ~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~ 166 (619)
T 3s94_A 87 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII 166 (619)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred CeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE
Confidence 788886 44 55555677899999998654333333334446667775 455555443 356777776543333222
Q ss_pred ccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEECCCceEEEEcCCCcEEEEEec
Q 011711 393 YTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDGLFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~ 471 (479)
...-.....+++ +++++.+.++-...+.|..+|++......... .......+++.++.++++-..++.|...|..
T Consensus 167 ~~~~~~P~Glal----d~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 167 NSEIYWPNGLTL----DYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKY 242 (619)
T ss_dssp CSSCSSEEEEEE----ETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTTTCSEEEEESS
T ss_pred eCCCCCCcEEEE----EccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECC
Confidence 222222334444 47666577777777889999987643332222 1233457777766566666677888888875
Q ss_pred cCC
Q 011711 472 AKP 474 (479)
Q Consensus 472 ~~~ 474 (479)
+++
T Consensus 243 tg~ 245 (619)
T 3s94_A 243 TGE 245 (619)
T ss_dssp SCC
T ss_pred CCc
Confidence 544
No 293
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.34 E-value=0.12 Score=49.77 Aligned_cols=195 Identities=7% Similarity=-0.001 Sum_probs=101.3
Q ss_pred CCccEEEEEEcCC--EEEEEeC-CC----cEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCeEE
Q 011711 270 PVGEVYSMVVANE--MLFAGAQ-DG----NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIR 339 (479)
Q Consensus 270 ~~~~v~~~~~~~~--~l~~g~~-dg----~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~ 339 (479)
.......++++++ .|+++.. ++ .+..++..... .....+.. ......++++ +.++++-..++.|.
T Consensus 177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~----~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~ 251 (430)
T 3tc9_A 177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF----KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVF 251 (430)
T ss_dssp CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS----CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce----eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEE
Confidence 3445677888766 4555544 22 23444433221 10111111 1223456664 55555555778999
Q ss_pred EEECCCCcEEEEEeC-CCCCcEEEEEc--CCEE-EEEeCCCeEEEEEcCCC-cc---eEEeccc---cC---------cc
Q 011711 340 VWDLDTLEAVMTLNG-HTDAPMSLLCW--DQYL-LSCSLDNTIKVWIMTEE-GN---LEVAYTH---NE---------DH 399 (479)
Q Consensus 340 iwd~~~~~~~~~~~~-h~~~v~~~~~~--~~~l-~s~s~dg~i~iwd~~~~-~~---~~~~~~~---~~---------~~ 399 (479)
.+|..++........ .......++++ +++| ++-...+.|..++.+.. .. ...+... .. ..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~ 331 (430)
T 3tc9_A 252 RYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARM 331 (430)
T ss_dssp EEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBB
T ss_pred EEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEe
Confidence 999987665322222 22345677776 6744 45556788999887532 11 1111111 00 00
Q ss_pred ceEE-Eeeee-------CCCCCcEEEEEeCCCeEEEeecCCCceeeeeec------------------cCceEEEEECC-
Q 011711 400 GVLA-LGGLN-------DPDGNPVLICSCNDDSVHLYELPSFMERGRIFS------------------RREVRVIETGP- 452 (479)
Q Consensus 400 ~~~~-~~~~~-------~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~------------------~~~v~~l~~s~- 452 (479)
.... ..... +++|. ++++-...+.|+.++. ++........ -.....+++.|
T Consensus 332 ~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~ 409 (430)
T 3tc9_A 332 HAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEE 409 (430)
T ss_dssp SSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETT
T ss_pred CCCcceEEEccccccccCCCCe-EEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECC
Confidence 0000 11111 13344 5666566788988884 4433222211 12588999999
Q ss_pred Cc-eEEEEcCCCcEEEEEec
Q 011711 453 DG-LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 453 ~g-~l~sg~~dg~v~vw~~~ 471 (479)
++ ++++-..+..|+.++++
T Consensus 410 ~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 410 RECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TTEEEEEEGGGTEEEEEEEC
T ss_pred CCEEEEEECCCCeEEEEccC
Confidence 56 66666677888887764
No 294
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.29 E-value=0.054 Score=49.49 Aligned_cols=185 Identities=10% Similarity=0.022 Sum_probs=95.2
Q ss_pred EcCCEEEEEeCC----CcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCC------CeEEEEECCCCcE
Q 011711 279 VANEMLFAGAQD----GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMD------NTIRVWDLDTLEA 348 (479)
Q Consensus 279 ~~~~~l~~g~~d----g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~d------g~I~iwd~~~~~~ 348 (479)
..+.+++.|+.+ ..+.+||..++. +.....+.........+..++..++.|+.+ ..+.+||+.+.+-
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~---W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W 130 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDS---WYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESW 130 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTE---EEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCe---EEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence 333466666654 568888887654 233333332233334445567777777765 4689999988654
Q ss_pred EEEEe--CCCCCcEEEEEcCCEEEEEeC---------CCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEE
Q 011711 349 VMTLN--GHTDAPMSLLCWDQYLLSCSL---------DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLI 417 (479)
Q Consensus 349 ~~~~~--~h~~~v~~~~~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 417 (479)
...-. ........+...+.+++.|+. -..+.+||+.+..-. .+.............. -+++ +++
T Consensus 131 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~~~~~---~~~~-i~v 205 (306)
T 3ii7_A 131 HTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT-ELCPMIEARKNHGLVF---VKDK-IFA 205 (306)
T ss_dssp EEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEE-EECCCSSCCBSCEEEE---ETTE-EEE
T ss_pred EeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEE-ECCCccchhhcceEEE---ECCE-EEE
Confidence 33211 111112333344666666654 345889998776422 2222111111111111 2444 666
Q ss_pred EEeCC-----CeEEEeecCCCce--eeeeec-cCceEEEEECCCc-eEEEEcCC-----CcEEEEEeccC
Q 011711 418 CSCND-----DSVHLYELPSFME--RGRIFS-RREVRVIETGPDG-LFFTGDGT-----GMLSVWKILAK 473 (479)
Q Consensus 418 s~~~d-----g~v~iwd~~~~~~--~~~~~~-~~~v~~l~~s~~g-~l~sg~~d-----g~v~vw~~~~~ 473 (479)
.|+.+ ..+.+||+.+.+- +..+.. ......+.+ ++ +++.|+.+ ..+.+||..+.
T Consensus 206 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 206 VGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp ECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred EeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 66543 4588999877532 222222 122233333 44 77777754 46777877653
No 295
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.28 E-value=0.028 Score=61.09 Aligned_cols=251 Identities=10% Similarity=0.061 Sum_probs=145.3
Q ss_pred CcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC-EEEEEeCCCc
Q 011711 214 GTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGN 292 (479)
Q Consensus 214 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~ 292 (479)
.+|.|-|+..+..+...+...+..-+.+..++++.-....+.++|+++...+....-...|.-..|-.. .|+..+ +..
T Consensus 48 ~~vvIidl~~~~~~~rrpi~AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT-~~a 126 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT-DNA 126 (1630)
T ss_pred ceEEEEECCCCCCcccccccchhhccCCCcceEEEecCCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEc-CCe
Confidence 478888888877665555555555566777888877888999999998887765555667888888665 555544 458
Q ss_pred EEEEEccCCCCCcccceeeecCC----CCCeEEEEEc--CCEEEEEe-------CCCeEEEEECCCCcEEEEEeCCCCCc
Q 011711 293 ILVWKGIPNTQNPFQLAALLKGH----TRPVTCLAVG--GKRLYSGS-------MDNTIRVWDLDTLEAVMTLNGHTDAP 359 (479)
Q Consensus 293 i~iwd~~~~~~~~~~~~~~~~~h----~~~i~~l~~~--~~~l~sgs-------~dg~I~iwd~~~~~~~~~~~~h~~~v 359 (479)
|+-|++.... .+...+.-| ...|..-..+ .++++..+ ..|.+.+|..+.+ ..+.+.+|...-
T Consensus 127 VyHW~~~~~s----~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F 201 (1630)
T 1xi4_A 127 VYHWSMEGES----QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF 201 (1630)
T ss_pred EEEeccCCCC----ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhh
Confidence 9999996532 223333333 2344444444 55544322 4588899987653 345566665554
Q ss_pred EEEEEcC----CEEEE-EeC---CCeEEEEEcCCC----cce----EEeccccCccceEEEeeeeCCCCCcEEEEEeCCC
Q 011711 360 MSLLCWD----QYLLS-CSL---DNTIKVWIMTEE----GNL----EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD 423 (479)
Q Consensus 360 ~~~~~~~----~~l~s-~s~---dg~i~iwd~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 423 (479)
..+...| ..|++ +.. .+.++|-++... ... ..+........-..++...++.-. ++..-+.-|
T Consensus 202 ~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G 280 (1630)
T 1xi4_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYG 280 (1630)
T ss_pred heeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-EEEEEecCc
Confidence 4444332 12222 221 268899888543 110 111111111122222222334444 666677899
Q ss_pred eEEEeecCCCceeeeeec-cCceEEEEECCC-ceEEEEcCCCcEEEEEec
Q 011711 424 SVHLYELPSFMERGRIFS-RREVRVIETGPD-GLFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 424 ~v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~-g~l~sg~~dg~v~vw~~~ 471 (479)
.|++||+.++..+..-.- ...|...+-.+. +-++.....|.|.--.++
T Consensus 281 ~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~ 330 (1630)
T 1xi4_A 281 YIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (1630)
T ss_pred eEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEc
Confidence 999999999887755432 444444444433 244444466665544443
No 296
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.26 E-value=0.038 Score=50.62 Aligned_cols=224 Identities=13% Similarity=0.126 Sum_probs=114.5
Q ss_pred CCCCEEEEEeCC----CcEEEEECCCCceEEEEecCCc---eeEEEeCCCEEEEEcC----------CeEEEEEcCCCce
Q 011711 202 LRSDKLYSGSRD----GTVQLWDCHTGQSASVINLGAE---VGSLICEGPWVFVGMP----------NVVKAWHIESSAE 264 (479)
Q Consensus 202 ~~~~~l~s~s~D----g~v~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~----------~~i~v~~~~~~~~ 264 (479)
-++..++.|+.+ ..+.++|..+++-...-....+ ......++.+++.|.. +.+.+||+.+.+-
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 345566666532 3688899887765443222211 1222335555555432 4688899888764
Q ss_pred EEec---CCCccEEEEEEcCCEEEEEeCC-----CcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCC-
Q 011711 265 FSLD---GPVGEVYSMVVANEMLFAGAQD-----GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMD- 335 (479)
Q Consensus 265 ~~~~---~~~~~v~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~d- 335 (479)
.... ..........+.+.+++.|+.+ ..+.+||..++. ++....+......-.++.+++..++.|+.+
T Consensus 103 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 179 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDE---WHLVAPMLTRRIGVGVAVLNRLLYAVGGFDG 179 (308)
T ss_dssp EECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTE---EEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred eECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCe---EeECCCCCccccceEEEEECCEEEEEeCCCC
Confidence 4322 1222223333444466666543 468889887654 222222222222333444567777777654
Q ss_pred ----CeEEEEECCCCcEEEE--EeCCCCCcEEEEEcCCEEEEEeCC-----CeEEEEEcCCCcceEEeccccCccceEEE
Q 011711 336 ----NTIRVWDLDTLEAVMT--LNGHTDAPMSLLCWDQYLLSCSLD-----NTIKVWIMTEEGNLEVAYTHNEDHGVLAL 404 (479)
Q Consensus 336 ----g~I~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 404 (479)
..+.+||+.+.+-... +.........+...+.+++.|+.+ ..+.+||+.+..- ..+............
T Consensus 180 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r~~~~~ 258 (308)
T 1zgk_A 180 TNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW-TFVAPMKHRRSALGI 258 (308)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE-EECCCCSSCCBSCEE
T ss_pred CCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcE-EECCCCCCCccceEE
Confidence 4688999987653321 111111123334446666777664 5688999876532 222211111111111
Q ss_pred eeeeCCCCCcEEEEEeCC-----CeEEEeecCCC
Q 011711 405 GGLNDPDGNPVLICSCND-----DSVHLYELPSF 433 (479)
Q Consensus 405 ~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~ 433 (479)
.. .+++ +++.|+.+ ..+.+||+.+.
T Consensus 259 ~~---~~~~-i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 259 TV---HQGR-IYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp EE---ETTE-EEEECCBCSSCBCCEEEEEETTTT
T ss_pred EE---ECCE-EEEEcCcCCCcccceEEEEcCCCC
Confidence 11 2344 66666643 45778887664
No 297
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.19 E-value=0.14 Score=47.15 Aligned_cols=215 Identities=10% Similarity=0.051 Sum_probs=121.1
Q ss_pred CcEEEEECCCCceEEEEecCCceeEEEe--CCCEEE-EE-cCCeEEEEEcCC----Cc-eEEecCCCccEEEEEEcC--C
Q 011711 214 GTVQLWDCHTGQSASVINLGAEVGSLIC--EGPWVF-VG-MPNVVKAWHIES----SA-EFSLDGPVGEVYSMVVAN--E 282 (479)
Q Consensus 214 g~v~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~l~-~~-~~~~i~v~~~~~----~~-~~~~~~~~~~v~~~~~~~--~ 282 (479)
..|+..|+.+.+....+........+.. .+..++ +. ..+.|..+++.+ .. .............++++. .
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~ 89 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence 4688889888776666655555555554 344444 44 467899999876 22 222222223456777763 3
Q ss_pred EE-EEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeC-C-CeEEEEECCCCcEEEEE-eCCC
Q 011711 283 ML-FAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSM-D-NTIRVWDLDTLEAVMTL-NGHT 356 (479)
Q Consensus 283 ~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~-d-g~I~iwd~~~~~~~~~~-~~h~ 356 (479)
.| ++-..++.|.++++..... .............++++ +..++.... . +.|...+++. +....+ ...-
T Consensus 90 ~ly~~d~~~~~I~~~~~~g~~~-----~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~ 163 (316)
T 1ijq_A 90 NIYWTDSVLGTVSVADTKGVKR-----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENI 163 (316)
T ss_dssp EEEEEETTTTEEEEEETTSSSE-----EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSC
T ss_pred eEEEEECCCCEEEEEeCCCCce-----EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCC
Confidence 44 4446678899999765421 11122233456788886 555555443 3 7899888864 333333 2233
Q ss_pred CCcEEEEEc--CCEEEEE-eCCCeEEEEEcCCCcceEEeccc-cCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC
Q 011711 357 DAPMSLLCW--DQYLLSC-SLDNTIKVWIMTEEGNLEVAYTH-NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (479)
Q Consensus 357 ~~v~~~~~~--~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 432 (479)
.....++++ +..|+.+ +..+.|..+|+..... ..+... ........+.. .++ .++++-...+.|..++..+
T Consensus 164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav---~~~-~ly~~d~~~~~V~~~~~~~ 238 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAV---FED-KVFWTDIINEAIFSANRLT 238 (316)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEE---ETT-EEEEEETTTTEEEEEETTT
T ss_pred CCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeecCCccCCcEEEEE---ECC-EEEEEECCCCeEEEEeCCC
Confidence 446677776 5555544 4567999999875332 333221 11111122222 133 3777777788999998877
Q ss_pred Cceeeee
Q 011711 433 FMERGRI 439 (479)
Q Consensus 433 ~~~~~~~ 439 (479)
++....+
T Consensus 239 g~~~~~i 245 (316)
T 1ijq_A 239 GSDVNLL 245 (316)
T ss_dssp CCCCEEE
T ss_pred CcceEEE
Confidence 6655444
No 298
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.19 E-value=0.13 Score=46.87 Aligned_cols=222 Identities=6% Similarity=0.003 Sum_probs=115.5
Q ss_pred CEEEEEeC--CCcEEEEECCCCceEEEEecCCc---eeEEEeCCCEEEEEc-----CCeEEEEEcCCCceEEec---CCC
Q 011711 205 DKLYSGSR--DGTVQLWDCHTGQSASVINLGAE---VGSLICEGPWVFVGM-----PNVVKAWHIESSAEFSLD---GPV 271 (479)
Q Consensus 205 ~~l~s~s~--Dg~v~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~-----~~~i~v~~~~~~~~~~~~---~~~ 271 (479)
.+++.|+. ...+.+||..+++-...-....+ ......++.+++.|. .+.+.+||+.+.+-.... ...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 92 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR 92 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc
Confidence 34555554 35788999988765443222211 122334565555543 267889999887644322 222
Q ss_pred ccEEEEEEcCCEEEEEeCC------CcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeC---------CC
Q 011711 272 GEVYSMVVANEMLFAGAQD------GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSM---------DN 336 (479)
Q Consensus 272 ~~v~~~~~~~~~l~~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~---------dg 336 (479)
.........+.+++.|+.+ ..+.+||..++. ++....+......-.++..++..++.|+. -.
T Consensus 93 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~---W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 93 DSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTES---WHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp BSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTE---EEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECC
T ss_pred cceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCc---eEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccc
Confidence 2223333444466667655 458899987754 22222222222233344456766676653 34
Q ss_pred eEEEEECCCCcEEEEEe--CCCCCcEEEEEcCCEEEEEeCC-----CeEEEEEcCCCcceEEeccccCccceEEEeeeeC
Q 011711 337 TIRVWDLDTLEAVMTLN--GHTDAPMSLLCWDQYLLSCSLD-----NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLND 409 (479)
Q Consensus 337 ~I~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (479)
.+.+||+.+.+-...-. .....-..+...+.+++.|+.+ ..+.+||+.+.+- ..+..............
T Consensus 170 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~--- 245 (306)
T 3ii7_A 170 SCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEW-KMVSPMPWKGVTVKCAA--- 245 (306)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEE-EECCCCSCCBSCCEEEE---
T ss_pred eEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcE-EECCCCCCCccceeEEE---
Confidence 58899998865332211 1111123333446666666653 4688899876532 22211111111111111
Q ss_pred CCCCcEEEEEeCC-----CeEEEeecCCCc
Q 011711 410 PDGNPVLICSCND-----DSVHLYELPSFM 434 (479)
Q Consensus 410 ~~~~~~l~s~~~d-----g~v~iwd~~~~~ 434 (479)
-++. +++.|+.+ ..+.+||+.+.+
T Consensus 246 ~~~~-i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 246 VGSI-VYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp ETTE-EEEEECBCSSSBCCEEEEEETTTTE
T ss_pred ECCE-EEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 2444 77777643 568888887643
No 299
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.18 E-value=0.14 Score=47.12 Aligned_cols=218 Identities=11% Similarity=0.056 Sum_probs=128.5
Q ss_pred CeEEEeecCCCceeeEEEecccccEEEEEeCCCCCE-EEEEeCCCcEEEEECCCCceE-EEEe--cCCc-eeEEEeCCCE
Q 011711 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDK-LYSGSRDGTVQLWDCHTGQSA-SVIN--LGAE-VGSLICEGPW 245 (479)
Q Consensus 171 ~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~-l~s~s~Dg~v~vwd~~~~~~~-~~~~--~~~~-~~~~~~~~~~ 245 (479)
..|+..+++........+........+++|.+.+.. .++-...+.|..+++..+... ..+. ...+ -.++.+.+..
T Consensus 13 ~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ 92 (318)
T 3sov_A 13 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEK 92 (318)
T ss_dssp EEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTE
T ss_pred CeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCe
Confidence 578888887652122222222345778999885544 455556788999998776421 1222 2222 2333333444
Q ss_pred E-EEE-cCCeEEEEEcCCCceEEe-cCCCccEEEEEEcCC--EEEEEe--CCCcEEEEEccCCCCCcccceeeecCCCCC
Q 011711 246 V-FVG-MPNVVKAWHIESSAEFSL-DGPVGEVYSMVVANE--MLFAGA--QDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (479)
Q Consensus 246 l-~~~-~~~~i~v~~~~~~~~~~~-~~~~~~v~~~~~~~~--~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~ 318 (479)
+ ++. ..+.|.+++++......+ .........+++++. .|+... ..+.|...++..... .......-..
T Consensus 93 ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-----~~~~~~~l~~ 167 (318)
T 3sov_A 93 LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-----FIIINSEIYW 167 (318)
T ss_dssp EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-----EEEECSSCSC
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-----EEEEECCCCC
Confidence 4 443 567899999887654333 244556788888864 555555 357888888765321 1111222334
Q ss_pred eEEEEEc--CCEEEEE-eCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCCE-EEEEeCCCeEEEEEcCCCcceEEec
Q 011711 319 VTCLAVG--GKRLYSG-SMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQY-LLSCSLDNTIKVWIMTEEGNLEVAY 393 (479)
Q Consensus 319 i~~l~~~--~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~ 393 (479)
-..|+++ ++.|+.+ +..+.|..+|++.......+.........++.+++. +++-...+.|..++..+++....+.
T Consensus 168 Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 168 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred ccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 5788886 5555544 567889999987543333333344456777777554 4455557889999987776555444
No 300
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.18 E-value=0.15 Score=47.21 Aligned_cols=262 Identities=11% Similarity=0.019 Sum_probs=130.8
Q ss_pred cccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec-----CCceeEEEeC-CCEEEEEcCCeEEEEEcCCCceE
Q 011711 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL-----GAEVGSLICE-GPWVFVGMPNVVKAWHIESSAEF 265 (479)
Q Consensus 192 ~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~-----~~~~~~~~~~-~~~l~~~~~~~i~v~~~~~~~~~ 265 (479)
...+.+|.|.+++..++ ++.+|.| +...+.|+.=..... ...+..+.++ +..++++..+.|.. ..+.++..
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~tW 111 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQSW 111 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEE-ESSTTSSC
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEE-ECCCCCCc
Confidence 35688999987777777 4556755 333344432222211 2234445443 34555566664443 33334432
Q ss_pred Eec----CCCccEEEEEEcC-CEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeE
Q 011711 266 SLD----GPVGEVYSMVVAN-EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTI 338 (479)
Q Consensus 266 ~~~----~~~~~v~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I 338 (479)
+.. .....+..+.+.+ +.+++++.+|.|..- .+.+.. ++.. ...+...+..+.+. +.+++++ .+|.+
T Consensus 112 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~t--W~~~--~~~~~~~~~~~~~~~~~~~~~~g-~~G~~ 185 (327)
T 2xbg_A 112 SQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGKN--WQAL--VQEAIGVMRNLNRSPSGEYVAVS-SRGSF 185 (327)
T ss_dssp EECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTSS--EEEE--ECSCCCCEEEEEECTTSCEEEEE-TTSSE
T ss_pred eECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCCC--CEEe--ecCCCcceEEEEEcCCCcEEEEE-CCCcE
Confidence 221 1234567777654 455556667755321 122221 3222 23445678888886 4555544 45555
Q ss_pred EE-EEC--CCCcEEEEEeCCCCCcEEEEEc-CCEEEEEeCCCeEEEEEcCCCcceEEeccc--cCccceEEEeeeeCCCC
Q 011711 339 RV-WDL--DTLEAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYTH--NEDHGVLALGGLNDPDG 412 (479)
Q Consensus 339 ~i-wd~--~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 412 (479)
.. .|- .+.+.+. ......+..+.+. +..++.++.+|.+++.+.+.+......... ...... ..+.+.+++
T Consensus 186 ~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~--~~v~~~~~~ 261 (327)
T 2xbg_A 186 YSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGF--LDLAYRTPN 261 (327)
T ss_dssp EEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCE--EEEEESSSS
T ss_pred EEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcce--EEEEecCCC
Confidence 44 342 2333331 2334456677665 344556667888777642222211111111 011111 222234666
Q ss_pred CcEEEEEeCCCeEEEeecCCCceeeeee----ccCceEEEEECCCceEEEEcCCCcEEEEE
Q 011711 413 NPVLICSCNDDSVHLYELPSFMERGRIF----SRREVRVIETGPDGLFFTGDGTGMLSVWK 469 (479)
Q Consensus 413 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~----~~~~v~~l~~s~~g~l~sg~~dg~v~vw~ 469 (479)
. +++++ .++.| .+..+.++.-..+. ....+..+.+.+++.+++++.+|.|.-++
T Consensus 262 ~-~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 262 E-VWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 319 (327)
T ss_dssp C-EEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred E-EEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence 5 55555 46766 33444443322222 13567888887666777888899765554
No 301
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.14 E-value=0.12 Score=45.67 Aligned_cols=193 Identities=10% Similarity=0.098 Sum_probs=121.4
Q ss_pred EEecccccEEEEEeCCCCCEEEE-EeCCCcEEEEECCCCceEEEEecC--CceeEEEe--CCCEEEEE-cCCeEEEEEcC
Q 011711 187 KLEGHKKAVSGIALPLRSDKLYS-GSRDGTVQLWDCHTGQSASVINLG--AEVGSLIC--EGPWVFVG-MPNVVKAWHIE 260 (479)
Q Consensus 187 ~~~~H~~~V~~l~~s~~~~~l~s-~s~Dg~v~vwd~~~~~~~~~~~~~--~~~~~~~~--~~~~l~~~-~~~~i~v~~~~ 260 (479)
.+.+-.+.+..++|+|+++.|++ ...++.|...|.. ++.++.+... .....+.. ++.++++. .++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 45565678999999998776655 6678899999998 8888888754 34444444 55565554 56788888876
Q ss_pred CCceE------Ee----cCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCC-Ccccceee----ecCCCCCeEEEE
Q 011711 261 SSAEF------SL----DGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQ-NPFQLAAL----LKGHTRPVTCLA 323 (479)
Q Consensus 261 ~~~~~------~~----~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~-~~~~~~~~----~~~h~~~i~~l~ 323 (479)
..... .+ .......-.+++++. .|+++.+.....+|.+..-.. ........ -..+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 55421 11 123445689999876 676676665656666542100 00111100 011334567888
Q ss_pred Ec---CCEEEEEeCCCeEEEEECCCCcEEEEEeCCC---------CCcEEEEEc--CCEEEEEeCCCeEEEEE
Q 011711 324 VG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT---------DAPMSLLCW--DQYLLSCSLDNTIKVWI 382 (479)
Q Consensus 324 ~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~---------~~v~~~~~~--~~~l~s~s~dg~i~iwd 382 (479)
++ +.+++.......|..+|.+ ++.+..+.-.. .....++++ |+ |+..++-+.++.+.
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence 86 6677888888899999976 55666554332 245677777 54 55557777666664
No 302
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.11 E-value=0.2 Score=47.73 Aligned_cols=219 Identities=9% Similarity=0.033 Sum_probs=125.6
Q ss_pred CCcEEEEECCCCceEEEEecCCceeEEEeC--CCEEE-EE-cCCeEEEEEcCCC----c-eEEecCCCccEEEEEEcC--
Q 011711 213 DGTVQLWDCHTGQSASVINLGAEVGSLICE--GPWVF-VG-MPNVVKAWHIESS----A-EFSLDGPVGEVYSMVVAN-- 281 (479)
Q Consensus 213 Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~l~-~~-~~~~i~v~~~~~~----~-~~~~~~~~~~v~~~~~~~-- 281 (479)
...|+..++........+........+..+ +..|+ +. ..+.|..+++... . .............++++.
T Consensus 91 ~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~ 170 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 170 (400)
T ss_dssp TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTT
T ss_pred cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecC
Confidence 357888888776665555554555555542 34444 43 5678888888752 1 222333445667777764
Q ss_pred C-EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEe-C-CCeEEEEECCCCcEEEEEeCCC
Q 011711 282 E-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGS-M-DNTIRVWDLDTLEAVMTLNGHT 356 (479)
Q Consensus 282 ~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs-~-dg~I~iwd~~~~~~~~~~~~h~ 356 (479)
. +.++-...+.|.+.++..... ...+...-.....|+++ +..|+... . .+.|...+++.......+...-
T Consensus 171 ~~lY~~d~~~~~I~~~~~~g~~~-----~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l 245 (400)
T 3p5b_L 171 SNIYWTDSVLGTVSVADTKGVKR-----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI 245 (400)
T ss_dssp TEEEEEETTTTEEEEECTTTCSE-----EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSC
T ss_pred CceEEEECCCCeEEEEeCCCCce-----EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCC
Confidence 3 444455678888888765431 12222233456788886 45555544 2 4789999987644433333333
Q ss_pred CCcEEEEEc--CCEEEEE-eCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCC
Q 011711 357 DAPMSLLCW--DQYLLSC-SLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSF 433 (479)
Q Consensus 357 ~~v~~~~~~--~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 433 (479)
.....++++ +..|+.+ ...+.|..+|++...................+.. ++..++++-...+.|..+|..++
T Consensus 246 ~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v----~~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 246 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV----FEDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE----ETTEEEEEESSSCSEEEEESSSC
T ss_pred CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE----eCCEEEEecCCCCeEEEEEcCCC
Confidence 456777777 5555554 4567899999875443333222111112223321 23347777777788999997777
Q ss_pred ceeeeee
Q 011711 434 MERGRIF 440 (479)
Q Consensus 434 ~~~~~~~ 440 (479)
+.+..+.
T Consensus 322 ~~~~~i~ 328 (400)
T 3p5b_L 322 SDVNLLA 328 (400)
T ss_dssp CCCEEEE
T ss_pred CceEEEe
Confidence 6665554
No 303
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.11 E-value=0.071 Score=48.92 Aligned_cols=175 Identities=11% Similarity=0.082 Sum_probs=93.4
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEecCC----ceeEE-EeCCCEEEEEc-----C-------CeEEEEEcCCCceEEecC
Q 011711 207 LYSGSRDGTVQLWDCHTGQSASVINLGA----EVGSL-ICEGPWVFVGM-----P-------NVVKAWHIESSAEFSLDG 269 (479)
Q Consensus 207 l~s~s~Dg~v~vwd~~~~~~~~~~~~~~----~~~~~-~~~~~~l~~~~-----~-------~~i~v~~~~~~~~~~~~~ 269 (479)
++.|+ ..+.+||..+++-.. ..... ...++ ..++.+++.|. + ..+..||..+.+-..+..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 44455 578999999887543 33221 11222 23566555543 1 137788888776443221
Q ss_pred ---CCccEEEEEEcCCEEEEEeCC--------CcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeC-C--
Q 011711 270 ---PVGEVYSMVVANEMLFAGAQD--------GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSM-D-- 335 (479)
Q Consensus 270 ---~~~~v~~~~~~~~~l~~g~~d--------g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~-d-- 335 (479)
...........+.+++.|+.+ ..+.+||..++. ++....+......-.++..++..++.|+. +
T Consensus 85 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~---W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 85 LPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFK---WGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDR 161 (315)
T ss_dssp BSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTE---EEECCCCSSCCBSCEEEEETTEEEEECCBCTTS
T ss_pred CCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCc---EeECCCCCCcccceeEEEECCEEEEEeCCCCCC
Confidence 111122233333356666632 458889987653 22222222222333344556777777775 2
Q ss_pred ---CeEEEEECCCCcEEEE--EeCCCCCcEEEEEcCCEEEEEeCCC-----eEEEEEcCCCc
Q 011711 336 ---NTIRVWDLDTLEAVMT--LNGHTDAPMSLLCWDQYLLSCSLDN-----TIKVWIMTEEG 387 (479)
Q Consensus 336 ---g~I~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~ 387 (479)
..+.+||+.+.+-... +.............+..++.|+.++ .+.+||+.+..
T Consensus 162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred cccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 4689999987643221 1111112233444567777777654 58888987653
No 304
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.05 E-value=0.25 Score=47.68 Aligned_cols=149 Identities=9% Similarity=-0.025 Sum_probs=81.9
Q ss_pred EEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEe-C-CCCCcEEEEEc--CCEEE-EEeCCCeEEEEEcCCC--cc-
Q 011711 320 TCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLN-G-HTDAPMSLLCW--DQYLL-SCSLDNTIKVWIMTEE--GN- 388 (479)
Q Consensus 320 ~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~-h~~~v~~~~~~--~~~l~-s~s~dg~i~iwd~~~~--~~- 388 (479)
..++++ +.++++-..++.|+.+|..+++....+. . .......++++ ++.|+ +-...+.|+.++.... ..
T Consensus 231 ~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~ 310 (433)
T 4hw6_A 231 KTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLA 310 (433)
T ss_dssp CCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBC
T ss_pred CEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccC
Confidence 345554 4445455567889999998777633332 1 12223346665 66444 5455788999887532 11
Q ss_pred -eEEeccc-c--Ccc--------ceEEEeeee---------CCCCCcEEEEEeCCCeEEEeecCCCceeeeeec------
Q 011711 389 -LEVAYTH-N--EDH--------GVLALGGLN---------DPDGNPVLICSCNDDSVHLYELPSFMERGRIFS------ 441 (479)
Q Consensus 389 -~~~~~~~-~--~~~--------~~~~~~~~~---------~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~------ 441 (479)
...+... . ... ......+.. +++|. ++++-...+.|+.++. ++... .+..
T Consensus 311 ~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~ 387 (433)
T 4hw6_A 311 VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSRE 387 (433)
T ss_dssp CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTTTEEEEECT-TSEEE-EEECCCTTCS
T ss_pred cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCCCEEEEECC-CCCEE-EEEeCCCCCc
Confidence 1122111 0 000 000111222 35555 6666667788999985 44322 2211
Q ss_pred -------------cCceEEEEEC-CCc-eEEEEcCCCcEEEEEec
Q 011711 442 -------------RREVRVIETG-PDG-LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 442 -------------~~~v~~l~~s-~~g-~l~sg~~dg~v~vw~~~ 471 (479)
-.....+++. ++| ++++-..+..|+.++++
T Consensus 388 ~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 388 WGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp SCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred cccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 1237889999 677 66666677888888764
No 305
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.02 E-value=0.19 Score=45.93 Aligned_cols=213 Identities=9% Similarity=-0.023 Sum_probs=112.9
Q ss_pred CeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeC----C-------CcEEEEECCCCceEEEEecCCc---e
Q 011711 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR----D-------GTVQLWDCHTGQSASVINLGAE---V 236 (479)
Q Consensus 171 ~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~----D-------g~v~vwd~~~~~~~~~~~~~~~---~ 236 (479)
..+.+||..+..=....+..........+...++..++.|+. + ..+.+||..+++-...-....+ .
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 92 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF 92 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce
Confidence 578889988762112222221122222233357788888873 1 1277889888765433222222 1
Q ss_pred eEEEeCCCEEEEEc---------CCeEEEEEcCCCceEEec---CCCccEEEEEEcCCEEEEEeC-C-----CcEEEEEc
Q 011711 237 GSLICEGPWVFVGM---------PNVVKAWHIESSAEFSLD---GPVGEVYSMVVANEMLFAGAQ-D-----GNILVWKG 298 (479)
Q Consensus 237 ~~~~~~~~~l~~~~---------~~~i~v~~~~~~~~~~~~---~~~~~v~~~~~~~~~l~~g~~-d-----g~i~iwd~ 298 (479)
.....++.+++.|. .+.+.+||+.+.+-.... .......++...+.+++.|+. + ..+.+||.
T Consensus 93 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 172 (315)
T 4asc_A 93 GLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDP 172 (315)
T ss_dssp EEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEET
T ss_pred eEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeC
Confidence 12233565555543 146889999887643322 122222233344446666665 2 46889998
Q ss_pred cCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCCC-----eEEEEECCCCcEEEEEe--CCCCCcEEEEEcCCEEEE
Q 011711 299 IPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDN-----TIRVWDLDTLEAVMTLN--GHTDAPMSLLCWDQYLLS 371 (479)
Q Consensus 299 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~l~s 371 (479)
.+.. ++.+..+......-.++..++..++.|+.++ .+.+||+.+.+-...-. ........+...+..++.
T Consensus 173 ~~~~---W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~ 249 (315)
T 4asc_A 173 KKFE---WKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAI 249 (315)
T ss_dssp TTTE---EEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred CCCe---EEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEECCEEEEE
Confidence 7754 2222222222233344555677788887654 58899998764332211 111122334445667777
Q ss_pred EeCCC--------------eEEEEEcCCC
Q 011711 372 CSLDN--------------TIKVWIMTEE 386 (479)
Q Consensus 372 ~s~dg--------------~i~iwd~~~~ 386 (479)
|+.++ .+.+||+.+.
T Consensus 250 GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 250 GGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred CCccccCcCCccccccccCcEEEecCCCC
Confidence 77532 3667777665
No 306
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.01 E-value=0.046 Score=50.54 Aligned_cols=143 Identities=13% Similarity=0.193 Sum_probs=90.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc------CC---EEEEEe-C--CCeEEEEEcC-CCcceEEe
Q 011711 326 GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW------DQ---YLLSCS-L--DNTIKVWIMT-EEGNLEVA 392 (479)
Q Consensus 326 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~------~~---~l~s~s-~--dg~i~iwd~~-~~~~~~~~ 392 (479)
...++....++-+.+||+ +++.++.+.. +.+..+..- ++ ++++.. . +++|.+|++. ....+..+
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 455666677889999999 8899988864 344444332 22 233333 3 5899999874 22234444
Q ss_pred ccc--c--Cc-cceEEEeeeeCCC-CCcEEEEEeCCCeEEEeecC-------CCceeeeeeccCceEEEEECCCc-eEEE
Q 011711 393 YTH--N--ED-HGVLALGGLNDPD-GNPVLICSCNDDSVHLYELP-------SFMERGRIFSRREVRVIETGPDG-LFFT 458 (479)
Q Consensus 393 ~~~--~--~~-~~~~~~~~~~~~~-~~~~l~s~~~dg~v~iwd~~-------~~~~~~~~~~~~~v~~l~~s~~g-~l~s 458 (479)
... . .. .....++...+|. +..++++...+|.+..|++. +.+.+.++.....+..+...+.. .|+.
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYI 196 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEE
Confidence 221 1 11 2222333333564 55567778889999999982 34556666667889999999876 9999
Q ss_pred EcCCCcEEEEEeccC
Q 011711 459 GDGTGMLSVWKILAK 473 (479)
Q Consensus 459 g~~dg~v~vw~~~~~ 473 (479)
+-+|-. ||.+...
T Consensus 197 ~eEd~G--Iw~~da~ 209 (355)
T 3amr_A 197 AEEDEA--IWKFSAE 209 (355)
T ss_dssp EETTTE--EEEEECS
T ss_pred ecccce--EEEEeCC
Confidence 999854 6666543
No 307
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.93 E-value=0.23 Score=45.31 Aligned_cols=211 Identities=14% Similarity=0.165 Sum_probs=109.6
Q ss_pred CeEEEeecCCC-ceeeEEEecccccEEEEEeCCCCCEEEEEeC----C-----CcEEEEECCCCceEEEEecCCc---ee
Q 011711 171 RFWHSWFCGEG-FTMLAKLEGHKKAVSGIALPLRSDKLYSGSR----D-----GTVQLWDCHTGQSASVINLGAE---VG 237 (479)
Q Consensus 171 ~~i~vw~~~~~-~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~----D-----g~v~vwd~~~~~~~~~~~~~~~---~~ 237 (479)
..+.+||..+. ...+..+......-..+.+ ++.+++.|+. + ..+.++|+.+.+-...-....+ ..
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 116 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 116 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence 46788888765 1222111111111112222 5666777665 2 4688999988764443322211 12
Q ss_pred EEEeCCCEEEEEc------CCeEEEEEcCCCceEEec---CCCccEEEEEEcCCEEEEEeCC-----CcEEEEEccCCCC
Q 011711 238 SLICEGPWVFVGM------PNVVKAWHIESSAEFSLD---GPVGEVYSMVVANEMLFAGAQD-----GNILVWKGIPNTQ 303 (479)
Q Consensus 238 ~~~~~~~~l~~~~------~~~i~v~~~~~~~~~~~~---~~~~~v~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~ 303 (479)
....++.+++.|. .+.+.+||+.+.+-.... .......++.+.+.+++.|+.+ ..+.+||+.++.
T Consensus 117 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~- 195 (308)
T 1zgk_A 117 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNE- 195 (308)
T ss_dssp EEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE-
T ss_pred EEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCe-
Confidence 2334666665543 357888999877644322 1222223333333466666654 458899987654
Q ss_pred CcccceeeecCCCCCeEEEEEcCCEEEEEeCC-----CeEEEEECCCCcEEEE--EeCCCCCcEEEEEcCCEEEEEeCC-
Q 011711 304 NPFQLAALLKGHTRPVTCLAVGGKRLYSGSMD-----NTIRVWDLDTLEAVMT--LNGHTDAPMSLLCWDQYLLSCSLD- 375 (479)
Q Consensus 304 ~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~l~s~s~d- 375 (479)
+..+..+........++.+++..++.|+.+ ..+.+||+.+.+-... +.........+...+.+++.|+.+
T Consensus 196 --W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 196 --WRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDG 273 (308)
T ss_dssp --EEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred --EeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCC
Confidence 222222222222334455567777777664 5689999987653321 111111123333446666677643
Q ss_pred ----CeEEEEEcCCC
Q 011711 376 ----NTIKVWIMTEE 386 (479)
Q Consensus 376 ----g~i~iwd~~~~ 386 (479)
..+.+||+.+.
T Consensus 274 ~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 274 HTFLDSVECYDPDTD 288 (308)
T ss_dssp SCBCCEEEEEETTTT
T ss_pred CcccceEEEEcCCCC
Confidence 35677777654
No 308
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.053 Score=50.19 Aligned_cols=193 Identities=17% Similarity=0.158 Sum_probs=103.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEecC--CceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcC
Q 011711 204 SDKLYSGSRDGTVQLWDCHTGQSASVINLG--AEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN 281 (479)
Q Consensus 204 ~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~ 281 (479)
+.+++.++.||.|.-.|.++|+....++.. .+. +....+... ..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~----------------------------~~~~~~~~~------~~ 55 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPL----------------------------IEIQEPSRL------ET 55 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCS----------------------------EECCCSCTT------TS
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCc----------------------------EEecCCccc------cC
Confidence 346888999999999999999988776543 111 110101100 12
Q ss_pred CEEEEE--eCCCcEEEEEccCCCCCcccceeeec--CCCCCeEE---EEE-------cCCEEEEEeCCCeEEEEECCCCc
Q 011711 282 EMLFAG--AQDGNILVWKGIPNTQNPFQLAALLK--GHTRPVTC---LAV-------GGKRLYSGSMDNTIRVWDLDTLE 347 (479)
Q Consensus 282 ~~l~~g--~~dg~i~iwd~~~~~~~~~~~~~~~~--~h~~~i~~---l~~-------~~~~l~sgs~dg~I~iwd~~~~~ 347 (479)
+.++++ +.||.|+.++..++... ...... -...++.. ..+ .+..+++|+.+|.+...|+++|+
T Consensus 56 ~~~~vv~p~~dG~l~a~~~~~G~~~---~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~ 132 (339)
T 2be1_A 56 YETLIIEPFGDGNIYYFNAHQGLQK---LPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE 132 (339)
T ss_dssp SEEEEECCSTTTEEEEEETTTEEEE---EEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred CcEEEEEECCCCEEEEEECCCCcEE---eeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence 233333 57888888887665221 111110 01222321 011 47789999999999999999999
Q ss_pred EEEEEeCCCCC-------cEEEE-------EcCCEEEEEeCCCeEEEEEcCCCcceEEecc--ccCc-cc-eEEEeeeeC
Q 011711 348 AVMTLNGHTDA-------PMSLL-------CWDQYLLSCSLDNTIKVWIMTEEGNLEVAYT--HNED-HG-VLALGGLND 409 (479)
Q Consensus 348 ~~~~~~~h~~~-------v~~~~-------~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~-~~-~~~~~~~~~ 409 (479)
.+.++...... ..+.. ..+..++.+..+..+.+.+ ++++ ...... .... .. .+......+
T Consensus 133 ~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s 210 (339)
T 2be1_A 133 IISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFS 210 (339)
T ss_dssp EEEEESTTCBCC--------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSC
T ss_pred EEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccc
Confidence 99999743210 11111 1245677777777777766 3332 111100 0000 00 000000001
Q ss_pred CCCCcEEEEEeCCCeEEEeecCCCceee
Q 011711 410 PDGNPVLICSCNDDSVHLYELPSFMERG 437 (479)
Q Consensus 410 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 437 (479)
.++. + +.++.||.|.-+|..++..+.
T Consensus 211 ~Dg~-~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 211 KDGM-C-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp SSSC-C-EEEETTTEEEEECSTTCCEEE
T ss_pred cCCc-E-EEECCCCEEEEEECCCCcEEE
Confidence 2355 3 346788999888888888776
No 309
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.84 E-value=0.28 Score=44.91 Aligned_cols=105 Identities=6% Similarity=0.091 Sum_probs=54.3
Q ss_pred cCCEEEEEeCC-------CcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeC------CCeEEEEECCCC
Q 011711 280 ANEMLFAGAQD-------GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSM------DNTIRVWDLDTL 346 (479)
Q Consensus 280 ~~~~l~~g~~d-------g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~------dg~I~iwd~~~~ 346 (479)
.+.+++.|+.+ ..+.+||..++. ++....+......-.++..++..++.|+. -..+.+||+.+.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 185 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAK---WSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKG 185 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTE---EEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCC---EeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCC
Confidence 33355556543 247778876653 22222222111122333455667677764 245899999886
Q ss_pred cEEEEE--eCCCCCcEEEEEcCCEEEEEeCC-----CeEEEEEcCCCc
Q 011711 347 EAVMTL--NGHTDAPMSLLCWDQYLLSCSLD-----NTIKVWIMTEEG 387 (479)
Q Consensus 347 ~~~~~~--~~h~~~v~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~ 387 (479)
+-...- .............+..++.|+.+ ..+.+||+.+.+
T Consensus 186 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 186 DWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 533221 11111123344456677777653 357788887654
No 310
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.81 E-value=0.12 Score=56.34 Aligned_cols=215 Identities=10% Similarity=0.088 Sum_probs=135.3
Q ss_pred CCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEe-CCCEE
Q 011711 168 DECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC-EGPWV 246 (479)
Q Consensus 168 ~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~l 246 (479)
++...|.|-|+.++..+.+.--.-.++| .+|..+.+|-=. ..++.|+|+++.+.+..+....++....+ +.+.+
T Consensus 45 ~~~~~vvIidl~~~~~~~rrpi~AdsAI----MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l 119 (1630)
T 1xi4_A 45 GEQAQVVIIDMNDPSNPIRRPISADSAI----MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV 119 (1630)
T ss_pred CCCceEEEEECCCCCCcccccccchhhc----cCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCee
Confidence 3445888999988744433322222222 467777666554 68999999999999999999888877776 67778
Q ss_pred EEEcCCeEEEEEcCCCceE--EecCC----CccEEEEEEcCC---EEEEEe------CCCcEEEEEccCCCCCcccceee
Q 011711 247 FVGMPNVVKAWHIESSAEF--SLDGP----VGEVYSMVVANE---MLFAGA------QDGNILVWKGIPNTQNPFQLAAL 311 (479)
Q Consensus 247 ~~~~~~~i~v~~~~~~~~~--~~~~~----~~~v~~~~~~~~---~l~~g~------~dg~i~iwd~~~~~~~~~~~~~~ 311 (479)
..-.+..|..|++...... .+..| ...|.....+++ .+++|- -.|.+.+|....+. .+.
T Consensus 120 ~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~ 193 (1630)
T 1xi4_A 120 ALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQP 193 (1630)
T ss_pred EEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chh
Confidence 8889999999999753321 11112 456666677766 444443 45889999987654 345
Q ss_pred ecCCCCCeEEEEEc-----CCEEEEEe---CCCeEEEEECCCC---cEE------EEEeC---CCCCcEEEEEc--CCEE
Q 011711 312 LKGHTRPVTCLAVG-----GKRLYSGS---MDNTIRVWDLDTL---EAV------MTLNG---HTDAPMSLLCW--DQYL 369 (479)
Q Consensus 312 ~~~h~~~i~~l~~~-----~~~l~sgs---~dg~I~iwd~~~~---~~~------~~~~~---h~~~v~~~~~~--~~~l 369 (479)
+.||...-..+... ...+..+. ..++++|-++... ... ..+-. ..+-..++..+ -..+
T Consensus 194 iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~i 273 (1630)
T 1xi4_A 194 IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV 273 (1630)
T ss_pred hhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEE
Confidence 66666555444443 11222222 1378999888543 111 11111 12234455555 3577
Q ss_pred EEEeCCCeEEEEEcCCCcceEEec
Q 011711 370 LSCSLDNTIKVWIMTEEGNLEVAY 393 (479)
Q Consensus 370 ~s~s~dg~i~iwd~~~~~~~~~~~ 393 (479)
...+.-|.|.+||+.++.++..-.
T Consensus 274 y~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 274 FLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred EEEecCceEEEEecccchhhhhcc
Confidence 888899999999999987664443
No 311
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.69 E-value=0.18 Score=46.15 Aligned_cols=155 Identities=9% Similarity=0.058 Sum_probs=94.4
Q ss_pred CCCeEEEEEc--CCEEEEEe-CCCeEEEEECCCCcEEEEEeCC-----CC--CcEEEEE---c--CCEEEEEe-------
Q 011711 316 TRPVTCLAVG--GKRLYSGS-MDNTIRVWDLDTLEAVMTLNGH-----TD--APMSLLC---W--DQYLLSCS------- 373 (479)
Q Consensus 316 ~~~i~~l~~~--~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~h-----~~--~v~~~~~---~--~~~l~s~s------- 373 (479)
...-.++.|+ ...|+.++ ..++|..||...+......... .. .+..+.+ + +.++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 3344578886 46666666 7899999999866544332211 11 2467888 4 33444333
Q ss_pred ------CCCeEEEEEcC---CCcceEEeccc--cCc-------cceEEEeeeeCCCCCcEEEEEeCC-CeEEEeecCCCc
Q 011711 374 ------LDNTIKVWIMT---EEGNLEVAYTH--NED-------HGVLALGGLNDPDGNPVLICSCND-DSVHLYELPSFM 434 (479)
Q Consensus 374 ------~dg~i~iwd~~---~~~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~l~s~~~d-g~v~iwd~~~~~ 434 (479)
.+..|..||+. +++.+....-. ... .......+..+++|+ ..++++.. +.|...+....
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~pdG~- 169 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVSADGK- 169 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEECTTSC-
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEeCCCC-
Confidence 26789999998 66655444311 111 112233444579998 66666666 77777776543
Q ss_pred eeeeee-c------cCceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 435 ERGRIF-S------RREVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 435 ~~~~~~-~------~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
....+. . ....+.|+++|+| .|++...+|.+..+|+..
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 222221 1 1236799999999 666666699999999774
No 312
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.66 E-value=0.79 Score=47.70 Aligned_cols=295 Identities=13% Similarity=0.135 Sum_probs=154.1
Q ss_pred CeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec--------CCceeEEEe-
Q 011711 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL--------GAEVGSLIC- 241 (479)
Q Consensus 171 ~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~--------~~~~~~~~~- 241 (479)
+-+..++..++ +......-....|.++....+|.+.+ |+.+ -+.+++..+++....... ...+.++..
T Consensus 211 ~Gl~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D 287 (758)
T 3ott_A 211 GYLFQYFPSTG-QIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFAD 287 (758)
T ss_dssp EEEEEEETTTT-EEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEEC
T ss_pred CCCeEEcCCCC-eEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEc
Confidence 34667777655 22111111245688888887777554 4444 478888877654332211 123455554
Q ss_pred -CCCEEEEEcCCeEEEEEcCCCce-EEe-----cCCCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceee--
Q 011711 242 -EGPWVFVGMPNVVKAWHIESSAE-FSL-----DGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAAL-- 311 (479)
Q Consensus 242 -~~~~l~~~~~~~i~v~~~~~~~~-~~~-----~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-- 311 (479)
++.+-++...| +.++....... ... ......|.++..+.+ .|..|+.+| +..++..++....+.....
T Consensus 288 ~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~ 365 (758)
T 3ott_A 288 QEHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGD 365 (758)
T ss_dssp TTCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTC
T ss_pred CCCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCC
Confidence 34555555445 54443222111 111 112346888887766 777777655 6566644322111111100
Q ss_pred --ecCCCCCeEEEEEc-CCEEEEEeCCCeEEEEECCCCcEEEEE-eC-----CCCCcEEEEEc-CCEEEEEeCCCeEEEE
Q 011711 312 --LKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTL-NG-----HTDAPMSLLCW-DQYLLSCSLDNTIKVW 381 (479)
Q Consensus 312 --~~~h~~~i~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~-----h~~~v~~~~~~-~~~l~s~s~dg~i~iw 381 (479)
.......|.++..+ ...|..|+ ++-|..+|..+++...-. .. ....|.++..+ ...|..|+..+-+.++
T Consensus 366 ~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~ 444 (758)
T 3ott_A 366 KTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVV 444 (758)
T ss_dssp SSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEE
T ss_pred cCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEE
Confidence 00123468888887 55677777 467999999887654321 11 12346777776 4677888877678888
Q ss_pred EcCCC-----cceE---EeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee----ccCceEEEE
Q 011711 382 IMTEE-----GNLE---VAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF----SRREVRVIE 449 (479)
Q Consensus 382 d~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~----~~~~v~~l~ 449 (479)
|..+. .... .......-......++..+++|..+++.++ .+-+..+|..+.+...... ....+.++.
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t-~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~ 523 (758)
T 3ott_A 445 DKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYN-NKGIDKINPRTREVTKLFADELTGEKSPNYLL 523 (758)
T ss_dssp EHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETT-CSSEEEEETTTTEEEEECTTTSCGGGCEEEEE
T ss_pred ccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccC-CCCcEEEeCCCCceEEecCCCcCCCcccceEE
Confidence 85421 1111 111111111111233344677873332344 4457888887654432211 134678888
Q ss_pred ECCCceEEEEcCCCcEEEEEeccC
Q 011711 450 TGPDGLFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 450 ~s~~g~l~sg~~dg~v~vw~~~~~ 473 (479)
...+|.|-.|+..| +..++..++
T Consensus 524 ~d~~g~lWigt~~G-l~~~~~~~~ 546 (758)
T 3ott_A 524 CDEDGLLWVGFHGG-VMRINPKDE 546 (758)
T ss_dssp ECTTSCEEEEETTE-EEEECC--C
T ss_pred ECCCCCEEEEecCc-eEEEecCCC
Confidence 88888444455555 677765443
No 313
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.62 E-value=0.4 Score=43.82 Aligned_cols=172 Identities=8% Similarity=-0.025 Sum_probs=82.5
Q ss_pred EEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCC-------CeEEEEECCCCcEEEEE--eCCCCCcEEEE
Q 011711 293 ILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMD-------NTIRVWDLDTLEAVMTL--NGHTDAPMSLL 363 (479)
Q Consensus 293 i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~d-------g~I~iwd~~~~~~~~~~--~~h~~~v~~~~ 363 (479)
+..||..++. +.....+............++..++.|+.+ ..+.+||+.+.+-...- ......-..+.
T Consensus 80 ~~~~d~~~~~---W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 156 (318)
T 2woz_A 80 FFQLDNVSSE---WVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS 156 (318)
T ss_dssp EEEEETTTTE---EEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE
T ss_pred EEEEeCCCCc---EEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE
Confidence 6777876553 222222222222333444567777777754 35888998876533221 11111122333
Q ss_pred EcCCEEEEEeC------CCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCC-----CeEEEeecCC
Q 011711 364 CWDQYLLSCSL------DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND-----DSVHLYELPS 432 (479)
Q Consensus 364 ~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~ 432 (479)
..+..++.|+. -..+.+||+.+..-. .+.............. -+++ +++.|+.+ ..+.+||+.+
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~~~~~---~~~~-iyv~GG~~~~~~~~~~~~yd~~~ 231 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK-DLAPMKTPRSMFGVAI---HKGK-IVIAGGVTEDGLSASVEAFDLKT 231 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEE-EECCCSSCCBSCEEEE---ETTE-EEEEEEEETTEEEEEEEEEETTT
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEE-ECCCCCCCcccceEEE---ECCE-EEEEcCcCCCCccceEEEEECCC
Confidence 44666666654 235889998775422 2211111111111111 2444 66666543 3577888876
Q ss_pred Cce--eeeeeccCceEEEEECCCceEEEEcCC--------------CcEEEEEecc
Q 011711 433 FME--RGRIFSRREVRVIETGPDGLFFTGDGT--------------GMLSVWKILA 472 (479)
Q Consensus 433 ~~~--~~~~~~~~~v~~l~~s~~g~l~sg~~d--------------g~v~vw~~~~ 472 (479)
.+- +..+.....-.+++...+.+++.|+.+ ..+.+||..+
T Consensus 232 ~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~ 287 (318)
T 2woz_A 232 NKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK 287 (318)
T ss_dssp CCEEECCCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTT
T ss_pred CeEEECCCCCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCC
Confidence 532 222222111122333333366776654 3577777654
No 314
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.47 E-value=0.9 Score=45.98 Aligned_cols=312 Identities=12% Similarity=0.052 Sum_probs=161.7
Q ss_pred eEEEeccCCe-eEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEE-EEEeCCCcEEEEECCCCceEEEEe
Q 011711 154 NVCYHWLSGN-CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKL-YSGSRDGTVQLWDCHTGQSASVIN 231 (479)
Q Consensus 154 ~~c~~~~~~~-~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l-~s~s~Dg~v~vwd~~~~~~~~~~~ 231 (479)
.+.+++..+. +++....+.|..++++........+..--.....|++.+.+..| ++-...+.|.+.++........+.
T Consensus 44 ~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~ 123 (619)
T 3s94_A 44 AVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW 123 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred EEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEe
Confidence 3344444443 34555567888888765421223333333578899998865544 455567899999987654433332
Q ss_pred -cCCcee--EEEeCCCEE-EEEc--CCeEEEEEcCCCceEEec-CCCccEEEEEEcCC--EEEEE-eCCCcEEEEEccCC
Q 011711 232 -LGAEVG--SLICEGPWV-FVGM--PNVVKAWHIESSAEFSLD-GPVGEVYSMVVANE--MLFAG-AQDGNILVWKGIPN 301 (479)
Q Consensus 232 -~~~~~~--~~~~~~~~l-~~~~--~~~i~v~~~~~~~~~~~~-~~~~~v~~~~~~~~--~l~~g-~~dg~i~iwd~~~~ 301 (479)
.-.... .+.+.+..+ ++.. ...|...++.......+. ........++++++ .|+.+ ...+.|...|+...
T Consensus 124 ~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 124 QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT 203 (619)
T ss_dssp SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence 112222 333444444 4442 457777787765544332 34456788898854 55444 45677888887654
Q ss_pred CCCcccceeeecCCCCCeEEEEEcCCEEEEE-eCCCeEEEEECCCCcEEEEEeCCCCCc---------------------
Q 011711 302 TQNPFQLAALLKGHTRPVTCLAVGGKRLYSG-SMDNTIRVWDLDTLEAVMTLNGHTDAP--------------------- 359 (479)
Q Consensus 302 ~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~h~~~v--------------------- 359 (479)
... .. ..+.......|++.++.++.. ...+.|...|..+++....+.......
T Consensus 204 ~~~--~~---~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ 278 (619)
T 3s94_A 204 NRQ--AV---VKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGID 278 (619)
T ss_dssp EEC--------------CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTT
T ss_pred ccE--EE---EeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCC
Confidence 321 11 111112224566765455544 467789999987765443332111111
Q ss_pred ------EEEE----------E-cC---------------CEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeee
Q 011711 360 ------MSLL----------C-WD---------------QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGL 407 (479)
Q Consensus 360 ------~~~~----------~-~~---------------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (479)
.|+. + .| .+|+.+ ..+.|+..++..............-.. ...+.
T Consensus 279 ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~~~~~~~~l~~--~~~ld 355 (619)
T 3s94_A 279 NGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDLRRISLDTPDFTDIVLQLEDIRH--AIAID 355 (619)
T ss_dssp GGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCCEECCCSCCSS--EEEEE
T ss_pred CCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-cccceEEEecCCCccceeEEeccccCc--cEEEE
Confidence 1111 0 00 122222 234556556654432111111111111 22333
Q ss_pred eCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec-cCceEEEEECCC-c-eEEEEcCCCcEEEEEeccC
Q 011711 408 NDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS-RREVRVIETGPD-G-LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 408 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~-g-~l~sg~~dg~v~vw~~~~~ 473 (479)
+++.+..++++-...+.|+.++++.......+.. -..+..+++.+. + ++++-...+.|.+.++...
T Consensus 356 ~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 356 YDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT 424 (619)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC
Confidence 4565554677666788899998876433222222 346778888863 4 6667677888888877543
No 315
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.36 E-value=0.3 Score=47.09 Aligned_cols=147 Identities=10% Similarity=0.043 Sum_probs=88.2
Q ss_pred eEEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeC-CC----eEEEEEcCCCcc
Q 011711 319 VTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSL-DN----TIKVWIMTEEGN 388 (479)
Q Consensus 319 i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~-dg----~i~iwd~~~~~~ 388 (479)
...|+++ ++.|+++...+.|+.+|+.+++... +.........++++ +++|+.+.. ++ .+.+++......
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~ 217 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK 217 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence 3556666 3566666665899999998766443 33344556778877 675665554 22 333444322111
Q ss_pred -eEEeccccCccceEEEeeeeCC-CCCcEEEEEeCCCeEEEeecCCCceeeeee--ccCceEEEEECCCc--eEEEEcCC
Q 011711 389 -LEVAYTHNEDHGVLALGGLNDP-DGNPVLICSCNDDSVHLYELPSFMERGRIF--SRREVRVIETGPDG--LFFTGDGT 462 (479)
Q Consensus 389 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~l~~s~~g--~l~sg~~d 462 (479)
...+.... ....+++ +| ++. ++++-..++.|..++..+........ .......++++|+| ++++-...
T Consensus 218 ~~~~l~~~~-~p~giav----dp~~g~-lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 218 VITELTKGQ-NCNGAET----HPINGE-LYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp SEEEEEECS-SCCCEEE----CTTTCC-EEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred eeeeeccCC-CceEEEE----eCCCCE-EEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence 11222111 2233334 58 555 77777778899999998765422222 23457899999999 45566678
Q ss_pred CcEEEEEecc
Q 011711 463 GMLSVWKILA 472 (479)
Q Consensus 463 g~v~vw~~~~ 472 (479)
+.|..++...
T Consensus 292 ~~I~~~~~d~ 301 (430)
T 3tc9_A 292 HYILRSDYDW 301 (430)
T ss_dssp TEEEEEEEET
T ss_pred CEEEEEeCCc
Confidence 8899988763
No 316
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.35 E-value=0.44 Score=45.93 Aligned_cols=187 Identities=7% Similarity=-0.014 Sum_probs=103.6
Q ss_pred cEEEEEEcC----CEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCC-----eEEEE
Q 011711 273 EVYSMVVAN----EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDN-----TIRVW 341 (479)
Q Consensus 273 ~v~~~~~~~----~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg-----~I~iw 341 (479)
....+++++ ..|+++...+.|+.+|..++. +..+.........++++ ++ |+.+...+ .+...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~------v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY------VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE------EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE------EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEE
Confidence 346788886 467776655899999986653 22333344567889987 66 55544322 23333
Q ss_pred ECCCCcE-EEEEeCCCCCcEEEEEc---CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEE
Q 011711 342 DLDTLEA-VMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLI 417 (479)
Q Consensus 342 d~~~~~~-~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 417 (479)
+...... ...+. .-.....++++ +.+.++-..++.|+.+|..++.....+........ ...+.++|+++.+++
T Consensus 213 ~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~--~~~ia~dpdG~~LYv 289 (433)
T 4hw6_A 213 TRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGS--NFHIVWHPTGDWAYI 289 (433)
T ss_dssp CGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSS--CEEEEECTTSSEEEE
T ss_pred ECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCC--cccEEEeCCCCEEEE
Confidence 3322111 01111 11223334443 44555555678899998875544222222111111 112344799986777
Q ss_pred EEeCCCeEEEeecCC--Ccee--eeeec----------------cCceEEEEE---------CCCc-eEEEEcCCCcEEE
Q 011711 418 CSCNDDSVHLYELPS--FMER--GRIFS----------------RREVRVIET---------GPDG-LFFTGDGTGMLSV 467 (479)
Q Consensus 418 s~~~dg~v~iwd~~~--~~~~--~~~~~----------------~~~v~~l~~---------s~~g-~l~sg~~dg~v~v 467 (479)
+-...+.|+.++.+. +... ..+.. -.....+++ .++| ++++-...+.|+.
T Consensus 290 ad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~ 369 (433)
T 4hw6_A 290 IYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRV 369 (433)
T ss_dssp EETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEE
T ss_pred EeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEE
Confidence 777788999988652 2211 11111 123677999 7788 6667667778877
Q ss_pred EE
Q 011711 468 WK 469 (479)
Q Consensus 468 w~ 469 (479)
++
T Consensus 370 ~~ 371 (433)
T 4hw6_A 370 LT 371 (433)
T ss_dssp EC
T ss_pred EC
Confidence 76
No 317
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.26 E-value=0.02 Score=59.21 Aligned_cols=216 Identities=9% Similarity=0.037 Sum_probs=113.3
Q ss_pred CCcEEEEECCCCceEEEEecCCceeEEEe--CCCEEEEE--cCCeEEEEEcCC----CceEE-ecCCCccEEEEEEc--C
Q 011711 213 DGTVQLWDCHTGQSASVINLGAEVGSLIC--EGPWVFVG--MPNVVKAWHIES----SAEFS-LDGPVGEVYSMVVA--N 281 (479)
Q Consensus 213 Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~--~~~~i~v~~~~~----~~~~~-~~~~~~~v~~~~~~--~ 281 (479)
.+.|+..++...+....+........+.. .+..|+.. ..+.|..+++.+ ..... ..........+++. .
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~ 464 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 464 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence 35788888887766554443333333333 45555554 457888888875 22211 11112233455655 3
Q ss_pred C-EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEe-C-CCeEEEEECCCCcEEEEEeCCC
Q 011711 282 E-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGS-M-DNTIRVWDLDTLEAVMTLNGHT 356 (479)
Q Consensus 282 ~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs-~-dg~I~iwd~~~~~~~~~~~~h~ 356 (479)
. ++++-...+.|.++++..... ...+.........|+++ +.+|+... . .+.|..+++........+...-
T Consensus 465 g~LY~tD~~~~~I~v~d~dg~~~-----~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l 539 (699)
T 1n7d_A 465 SNIYWTDSVLGTVSVADTKGVKR-----KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI 539 (699)
T ss_dssp SBCEECCTTTSCEEEEBSSSCCE-----EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSC
T ss_pred CcEEEEeccCCeEEEEecCCCce-----EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCC
Confidence 3 444445678899998765431 11122222334566775 44444433 2 2688888776432221112222
Q ss_pred CCcEEEEEc---CCEEEEEeCCCeEEEEEcCCCcceEEecccc---CccceEEEeeeeCCCCCcEEEEEeCCCeEEEeec
Q 011711 357 DAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHN---EDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (479)
Q Consensus 357 ~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 430 (479)
.....++++ +.++++-+..+.|..+++..... ..+.... .....+++ ++..++++....+.|..++.
T Consensus 540 ~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glav------d~~~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 540 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAV------FEDKVFWTDIINEAIFSANR 612 (699)
T ss_dssp SSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEE------ETTEEEEECSTTTCEEEEET
T ss_pred CCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEE------ECCEEEEEeCCCCeEEEEEc
Confidence 334566665 34555656678899999865333 2332211 11112222 12346777777789999998
Q ss_pred CCCceeeeee
Q 011711 431 PSFMERGRIF 440 (479)
Q Consensus 431 ~~~~~~~~~~ 440 (479)
.+++.+..+.
T Consensus 613 ~~G~~~~~i~ 622 (699)
T 1n7d_A 613 LTGSDVNLLA 622 (699)
T ss_dssp TTEEEEECCC
T ss_pred cCCCceEEee
Confidence 7777665554
No 318
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=96.25 E-value=0.62 Score=41.89 Aligned_cols=240 Identities=14% Similarity=0.104 Sum_probs=133.5
Q ss_pred ccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEE-EEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEe-cCC
Q 011711 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSAS-VINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSL-DGP 270 (479)
Q Consensus 193 ~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~-~~~ 270 (479)
..|..|+.... +.+.-. ||.|..|-....-.+. .......+..+.+.....++-.++.+..|-....-.+-. ...
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~~G~v~~wG~n~~Gqlg~P~~~ 100 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPAEA 100 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEETTEEEEEECCTTSTTCCCGGG
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEECCEEEEeeCCCCCCCCCCccc
Confidence 35777776433 222234 8999999765432211 111223456666644433332589999998665332211 112
Q ss_pred CccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCcEEE
Q 011711 271 VGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVM 350 (479)
Q Consensus 271 ~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 350 (479)
...|..++......++-. ||.|+.|-.....+... .......|..++......+.-. ||.|..|-....-.+.
T Consensus 101 ~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~-----~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg 173 (282)
T 3qhy_B 101 RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTV-----PAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTT 173 (282)
T ss_dssp SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSC-----CGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTS
T ss_pred CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCC-----CccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCC
Confidence 347888988888666666 99999998665432111 1112346777777655544445 8999999765422111
Q ss_pred EEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeec
Q 011711 351 TLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (479)
Q Consensus 351 ~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 430 (479)
.-..-...|..++.-..+.+.- .||.|..|-......+-.-......+..+.. -... .++.. ||.|+.|=.
T Consensus 174 ~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~-----G~~h-~~al~--~g~v~~wG~ 244 (282)
T 3qhy_B 174 VPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIAS-----GEWY-SLALK--NGKVIAWGS 244 (282)
T ss_dssp CCGGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEE-----CSSC-EEEEE--TTEEEEEST
T ss_pred CceecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEc-----CCCE-EEEEE--CCEEEEecC
Confidence 1111124577777776655555 6999999976655443221111222222322 2222 34433 999999977
Q ss_pred CCCceeeeeeccCceEEEEECCCc
Q 011711 431 PSFMERGRIFSRREVRVIETGPDG 454 (479)
Q Consensus 431 ~~~~~~~~~~~~~~v~~l~~s~~g 454 (479)
+....+.. ...|..++.....
T Consensus 245 n~~gq~~v---~~~v~~iaaG~~h 265 (282)
T 3qhy_B 245 SRTAPSSV---QSGVSSIEAGPNA 265 (282)
T ss_dssp TCCCCGGG---SSCEEEEEECSSC
T ss_pred CCCccccC---CCCcEEEEECcCe
Confidence 65433322 3457777776665
No 319
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.25 E-value=0.74 Score=42.79 Aligned_cols=229 Identities=9% Similarity=0.044 Sum_probs=114.0
Q ss_pred CeeEeCCC-CCeEEEeecCC---CceeeEEEe-cccccEEEEEeCCCCCEEEEEeC-C---------CcEEEEECCCCce
Q 011711 162 GNCVKGDE-CRFWHSWFCGE---GFTMLAKLE-GHKKAVSGIALPLRSDKLYSGSR-D---------GTVQLWDCHTGQS 226 (479)
Q Consensus 162 ~~~~~g~~-d~~i~vw~~~~---~~~~~~~~~-~H~~~V~~l~~s~~~~~l~s~s~-D---------g~v~vwd~~~~~~ 226 (479)
...+.|+. ...+.+||..+ ..+.+..+. .....-..+.+ ++.+++.|+. + ..+.+||+.+.+-
T Consensus 21 ~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 21 TVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp EEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred EEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 34444443 34688888863 233333333 11111222222 4667777765 2 4688999988765
Q ss_pred EEEEecC-Cc---eeEEEeCCCEEEEEc-C---------------------------------------CeEEEEEcCCC
Q 011711 227 ASVINLG-AE---VGSLICEGPWVFVGM-P---------------------------------------NVVKAWHIESS 262 (479)
Q Consensus 227 ~~~~~~~-~~---~~~~~~~~~~l~~~~-~---------------------------------------~~i~v~~~~~~ 262 (479)
...-... .. ...+..++.+++.|. + +.+.+||+.+.
T Consensus 99 ~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~ 178 (357)
T 2uvk_A 99 VKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQ 178 (357)
T ss_dssp EECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTT
T ss_pred EECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCC
Confidence 4433322 11 123345676666653 1 57899999887
Q ss_pred ceEEecC-C-CccE-EEEEEcCC-EEEEEeC------CCcEEEEEccCCCCCcccceeeecCCC--CCeEEEEEcCCEEE
Q 011711 263 AEFSLDG-P-VGEV-YSMVVANE-MLFAGAQ------DGNILVWKGIPNTQNPFQLAALLKGHT--RPVTCLAVGGKRLY 330 (479)
Q Consensus 263 ~~~~~~~-~-~~~v-~~~~~~~~-~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~h~--~~i~~l~~~~~~l~ 330 (479)
+-..... . .... .+++..++ +++.|+. ...+.+||+...... +..+..+.... ....++..++.+++
T Consensus 179 ~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~iyv 257 (357)
T 2uvk_A 179 QWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLK-WNKLAPVSSPDGVAGGFAGISNDSLIF 257 (357)
T ss_dssp EEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CE-EEECCCSSTTTCCBSCEEEEETTEEEE
T ss_pred cEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCc-EEecCCCCCCcccccceEEEECCEEEE
Confidence 6433221 1 1111 34444455 5555553 345777886222111 22222221111 12234455677777
Q ss_pred EEeCC----------------------CeEEEEECCCCcE--EEEEeCCCCCcEEEEEcCCEEEEEeCCC------eEEE
Q 011711 331 SGSMD----------------------NTIRVWDLDTLEA--VMTLNGHTDAPMSLLCWDQYLLSCSLDN------TIKV 380 (479)
Q Consensus 331 sgs~d----------------------g~I~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~l~s~s~dg------~i~i 380 (479)
.|+.+ ..+.+||+.+.+- +..+......-.++...+++++.|+.++ .|.+
T Consensus 258 ~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~ 337 (357)
T 2uvk_A 258 AGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVL 337 (357)
T ss_dssp ECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEE
T ss_pred EcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEE
Confidence 77632 2578899887543 3333332223344555677888888653 3555
Q ss_pred EEcCCCcceEEec
Q 011711 381 WIMTEEGNLEVAY 393 (479)
Q Consensus 381 wd~~~~~~~~~~~ 393 (479)
+++++++......
T Consensus 338 l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 338 ITVKDNKVTVQNL 350 (357)
T ss_dssp EEC-CCSCEEEC-
T ss_pred EEEcCcEeEeeec
Confidence 6777766554443
No 320
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.10 E-value=0.67 Score=40.88 Aligned_cols=192 Identities=11% Similarity=0.149 Sum_probs=114.3
Q ss_pred ecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeec-CCCCCeEEEEEc--CCEEEEEeCCCeEEE
Q 011711 267 LDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLK-GHTRPVTCLAVG--GKRLYSGSMDNTIRV 340 (479)
Q Consensus 267 ~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-~h~~~i~~l~~~--~~~l~sgs~dg~I~i 340 (479)
+.+-...+..++++++ ++++...++.|...|.. +. ....+. .-....-.|++. +.++++.-.++.+.+
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~-----v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD-----LIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYV 95 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC-----EEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC-----EEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEE
Confidence 3455567999999975 55667788899999986 33 223321 112456677775 444455446778999
Q ss_pred EECCCCcE---EEEEe------CCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCC---CcceEEecc-------ccCcc
Q 011711 341 WDLDTLEA---VMTLN------GHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTE---EGNLEVAYT-------HNEDH 399 (479)
Q Consensus 341 wd~~~~~~---~~~~~------~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~-------~~~~~ 399 (479)
+++..... +.... ........++++ ++.|+++.......+|.+.. ...+..... .....
T Consensus 96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 98765442 23332 122335788887 55677776665555555531 111222211 11223
Q ss_pred ceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeecc----------CceEEEEECCCc-eEEEEcCCCcEEEE
Q 011711 400 GVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSR----------REVRVIETGPDG-LFFTGDGTGMLSVW 468 (479)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----------~~v~~l~~s~~g-~l~sg~~dg~v~vw 468 (479)
..+++ +|....+++.+..+..+.++|... +.+..+.-. .....|+|.++| ++++ ++-.. +|
T Consensus 176 S~l~~----dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~--~y 247 (255)
T 3qqz_A 176 SGAEF----NQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNR--FY 247 (255)
T ss_dssp CEEEE----ETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTE--EE
T ss_pred eeEEE----cCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCce--EE
Confidence 34444 476666888888899999999764 444444321 367899999999 4444 55554 45
Q ss_pred Eecc
Q 011711 469 KILA 472 (479)
Q Consensus 469 ~~~~ 472 (479)
.+..
T Consensus 248 ~f~~ 251 (255)
T 3qqz_A 248 RFTP 251 (255)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 4433
No 321
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.05 E-value=0.86 Score=41.68 Aligned_cols=193 Identities=11% Similarity=0.069 Sum_probs=107.6
Q ss_pred cccEEEEEeCCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCC---------ceeEEEe-----CCCEEEEEc------
Q 011711 192 KKAVSGIALPLRSDKLYSGS-RDGTVQLWDCHTGQSASVINLGA---------EVGSLIC-----EGPWVFVGM------ 250 (479)
Q Consensus 192 ~~~V~~l~~s~~~~~l~s~s-~Dg~v~vwd~~~~~~~~~~~~~~---------~~~~~~~-----~~~~l~~~~------ 250 (479)
..--.+++|.+....|+.++ ..++|..||...+..... .... ....+.. +++++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 33345678877666666666 789999999986654444 2221 1234444 445665433
Q ss_pred --------CCeEEEEEcC---CCceEE-ec--C-----------CCccEEEEEEcCC--EEEEEeCC-CcEEEEEccCCC
Q 011711 251 --------PNVVKAWHIE---SSAEFS-LD--G-----------PVGEVYSMVVANE--MLFAGAQD-GNILVWKGIPNT 302 (479)
Q Consensus 251 --------~~~i~v~~~~---~~~~~~-~~--~-----------~~~~v~~~~~~~~--~l~~g~~d-g~i~iwd~~~~~ 302 (479)
+..+..+|+. +++... .. . .......++.+++ ..++++.. +.|...+.....
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence 5779999999 565432 11 1 2235788888877 55556666 777666655432
Q ss_pred CCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcE--EEEE-eCCC---CCcEE---EEEcCCE-EE
Q 011711 303 QNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEA--VMTL-NGHT---DAPMS---LLCWDQY-LL 370 (479)
Q Consensus 303 ~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~--~~~~-~~h~---~~v~~---~~~~~~~-l~ 370 (479)
...+.............+.|+++ ++.|++....|.|..+|+.+... +..- .+.. ..... ....++. ++
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV 250 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLV 250 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEE
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEE
Confidence 11000000001122335678886 88888887799999999985433 2211 0211 11222 2234666 44
Q ss_pred EEeCCCeEEEEEcCC
Q 011711 371 SCSLDNTIKVWIMTE 385 (479)
Q Consensus 371 s~s~dg~i~iwd~~~ 385 (479)
+....+.+.+.+.+.
T Consensus 251 ~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 251 GARAPYAISFRSWDN 265 (334)
T ss_dssp EEETTEEEEEECSST
T ss_pred EcCCCCEEEEECCCC
Confidence 555566665655444
No 322
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.88 E-value=0.94 Score=40.70 Aligned_cols=219 Identities=16% Similarity=0.148 Sum_probs=123.4
Q ss_pred ceeEEEeCCCE-EEEEcCCeEEEEEcCCCceEEe-cCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeee
Q 011711 235 EVGSLICEGPW-VFVGMPNVVKAWHIESSAEFSL-DGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALL 312 (479)
Q Consensus 235 ~~~~~~~~~~~-l~~~~~~~i~v~~~~~~~~~~~-~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 312 (479)
.+..+...... ++.. ++.+..|-....-.+-. ......|..++......++-. ||.|+.|-.....+... +
T Consensus 25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~-P---- 97 (282)
T 3qhy_B 25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV-P---- 97 (282)
T ss_dssp SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC-C----
T ss_pred CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC-C----
Confidence 45555554443 3334 88888887654332211 122346778888777433335 99999998665432111 0
Q ss_pred cCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEe
Q 011711 313 KGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVA 392 (479)
Q Consensus 313 ~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 392 (479)
..-...|..++......+.-. ||.|+.|-....-.+..-......|..++.-..+.+.-. ||.|..|-......+...
T Consensus 98 ~~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p 175 (282)
T 3qhy_B 98 AEARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVP 175 (282)
T ss_dssp GGGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCC
T ss_pred cccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCc
Confidence 111346888888766666666 999999976542211111112344677776666555555 899999977654443211
Q ss_pred ccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeee-eccCceEEEEECCCceEEEEcCCCcEEEEEec
Q 011711 393 YTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRI-FSRREVRVIETGPDGLFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~ 471 (479)
..... ....+++ .....++. .||.|+.|=.+..-.+... .....|..++...+..++.. ||.|..|-..
T Consensus 176 ~~~~~--~v~~i~~----G~~hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~--~g~v~~wG~n 245 (282)
T 3qhy_B 176 AEAQS--GVDDVAG----GIFHSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK--NGKVIAWGSS 245 (282)
T ss_dssp GGGGS--SEEEEEE----CSSEEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE--TTEEEEESTT
T ss_pred eecCC--CeEEEEe----cCCEEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE--CCEEEEecCC
Confidence 11122 2233321 11223444 5999999976654333221 22456888887776644443 8999988654
Q ss_pred c
Q 011711 472 A 472 (479)
Q Consensus 472 ~ 472 (479)
.
T Consensus 246 ~ 246 (282)
T 3qhy_B 246 R 246 (282)
T ss_dssp C
T ss_pred C
Confidence 4
No 323
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.86 E-value=0.0037 Score=42.94 Aligned_cols=45 Identities=22% Similarity=0.506 Sum_probs=29.5
Q ss_pred ccccCCCcc--cccccccCC----CcccccceeeeeecCccCCCCCCcccc
Q 011711 35 ERSLFNPVN--ERAGGRVGG----GWPTKKVLCVYFLEGRCNRNPCRFAHT 79 (479)
Q Consensus 35 ~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~l~~ 79 (479)
.||.+..+. =++.|-.-. ..+.+..||.+|..|+|.|..|+|+|.
T Consensus 13 ~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~ 63 (70)
T 3d2q_A 13 QRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHP 63 (70)
T ss_dssp HTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHTTCCCCTTCCSBCC
T ss_pred hcCCCCCCCCCCCCccCcccccccccCCcceeccccCcCCCCCCCcCeeCC
Confidence 457777663 444442110 012256889999999999999999986
No 324
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.46 E-value=1.6 Score=40.42 Aligned_cols=136 Identities=10% Similarity=-0.006 Sum_probs=71.2
Q ss_pred CcEEEEECCCCceEEEEecCC--c--eeEEEeCCCEEEEEc-------CCeEEEEEc--CCCceEEecC---CCc--cEE
Q 011711 214 GTVQLWDCHTGQSASVINLGA--E--VGSLICEGPWVFVGM-------PNVVKAWHI--ESSAEFSLDG---PVG--EVY 275 (479)
Q Consensus 214 g~v~vwd~~~~~~~~~~~~~~--~--~~~~~~~~~~l~~~~-------~~~i~v~~~--~~~~~~~~~~---~~~--~v~ 275 (479)
..+.+||+.+.+-...-.... . ......++.+++.|. ...+..||+ .+..-..... ... ...
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~ 247 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGF 247 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCE
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccce
Confidence 478999998887555443332 1 223334566555542 346777877 4433222211 111 112
Q ss_pred EEEEcCCEEEEEeCC----------------------CcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEe
Q 011711 276 SMVVANEMLFAGAQD----------------------GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGS 333 (479)
Q Consensus 276 ~~~~~~~~l~~g~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs 333 (479)
++.....+++.|+.+ ..+.+||+.+.. +..+..+......-.++.+++..++.|+
T Consensus 248 ~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~r~~~~~~~~~~~i~v~GG 324 (357)
T 2uvk_A 248 AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK---WDKSGELSQGRAYGVSLPWNNSLLIIGG 324 (357)
T ss_dssp EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC------CEEEEECSSCCBSSEEEEETTEEEEEEE
T ss_pred EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc---eeeCCCCCCCcccceeEEeCCEEEEEee
Confidence 333344466666532 257789987654 3344444433333445666788888888
Q ss_pred CCC------eEEEEECCCCcEEEEE
Q 011711 334 MDN------TIRVWDLDTLEAVMTL 352 (479)
Q Consensus 334 ~dg------~I~iwd~~~~~~~~~~ 352 (479)
.++ .|.++++++++.+...
T Consensus 325 ~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 325 ETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp ECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eCCCCCEeeeEEEEEEcCcEeEeee
Confidence 653 4666788887766544
No 325
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.44 E-value=1.1 Score=43.66 Aligned_cols=149 Identities=14% Similarity=0.087 Sum_probs=89.1
Q ss_pred CeEEEEEc---CCEEEEE-eCCCeEEEEECCCCcEEEEEeCCC---CCcEEEEE-------c--CCEEEEEeCCC-----
Q 011711 318 PVTCLAVG---GKRLYSG-SMDNTIRVWDLDTLEAVMTLNGHT---DAPMSLLC-------W--DQYLLSCSLDN----- 376 (479)
Q Consensus 318 ~i~~l~~~---~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~h~---~~v~~~~~-------~--~~~l~s~s~dg----- 376 (479)
....|+++ +..|+.+ ...+.|++.|+.++.....+.... .....+++ + +++|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 35677776 2344444 445789999998877655444322 23677888 4 67666666554
Q ss_pred --eEEEEEcCCCcce------EEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC-------CCce------
Q 011711 377 --TIKVWIMTEEGNL------EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP-------SFME------ 435 (479)
Q Consensus 377 --~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~-------~~~~------ 435 (479)
.|.+++....... ..+..... ...+++ +|++..++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~-p~giav----dp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQ-CNGATI----HPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESC-CCCEEE----CTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred CceEEEEecCCCCceeecccceeeccCCC-ceEEEE----cCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 2666654431111 12222222 223333 58666588888888999999997 4443
Q ss_pred -----eeee---eccCceEEEEECCCc-e-EEEEcCCCcEEEEEec
Q 011711 436 -----RGRI---FSRREVRVIETGPDG-L-FFTGDGTGMLSVWKIL 471 (479)
Q Consensus 436 -----~~~~---~~~~~v~~l~~s~~g-~-l~sg~~dg~v~vw~~~ 471 (479)
...+ ........++|+|+| . +++-.....|+.++..
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 1122 123456899999999 4 5566667788886654
No 326
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.27 E-value=2.9 Score=42.30 Aligned_cols=307 Identities=10% Similarity=0.044 Sum_probs=168.4
Q ss_pred eEEEeccCC-eeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 011711 154 NVCYHWLSG-NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (479)
Q Consensus 154 ~~c~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~ 232 (479)
.+++....+ ..++....+.|...+++.... ..+...-..-.+|++.. +..++|-...+.|...|..+++....+..
T Consensus 170 GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~ 246 (628)
T 4a0p_A 170 GLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQG 246 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred eEEEccccCEEEEEECCCCEEEEEcCCCCce--EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEec
Confidence 455555444 344556677888888865422 23333334456777754 44555555578888888777654333321
Q ss_pred CC---------------------------ceeEEEe------------------------CCCEEEEEcCCeEEEEEcCC
Q 011711 233 GA---------------------------EVGSLIC------------------------EGPWVFVGMPNVVKAWHIES 261 (479)
Q Consensus 233 ~~---------------------------~~~~~~~------------------------~~~~l~~~~~~~i~v~~~~~ 261 (479)
.. +-.|+.. ...+++.+....|+-..+..
T Consensus 247 ~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~ 326 (628)
T 4a0p_A 247 HLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDE 326 (628)
T ss_dssp SCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCT
T ss_pred CCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEeccc
Confidence 10 0011110 11234444455555555543
Q ss_pred Cce--EEe-cCCCccEEEEEEcCC--EEEEE-eCCCcEEEEEccCCCCCcccceeeecC------CCCCeEEEEEc---C
Q 011711 262 SAE--FSL-DGPVGEVYSMVVANE--MLFAG-AQDGNILVWKGIPNTQNPFQLAALLKG------HTRPVTCLAVG---G 326 (479)
Q Consensus 262 ~~~--~~~-~~~~~~v~~~~~~~~--~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~------h~~~i~~l~~~---~ 326 (479)
... ..+ ......+.++++++. .|+.+ ...+.|+.+++..... ...+.. ....+..|+++ +
T Consensus 327 ~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~-----~~v~~~~~~~~~~~~~p~glAvD~~~~ 401 (628)
T 4a0p_A 327 QQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG-----FTVVVSSVPSQNLEIQPYDLSIDIYSR 401 (628)
T ss_dssp TCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEEC--------CCCEEEEEEETTTT
T ss_pred ccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCc-----eEEEEcccccccccCCcceEEeeccCC
Confidence 321 111 122356788888864 55444 4567788887654321 111211 23457788887 4
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEE-eCCCCCcEEEEEc--CCEE-EEEeCCC--eEEEEEcCCCcceEEeccccCccc
Q 011711 327 KRLYSGSMDNTIRVWDLDTLEAVMTL-NGHTDAPMSLLCW--DQYL-LSCSLDN--TIKVWIMTEEGNLEVAYTHNEDHG 400 (479)
Q Consensus 327 ~~l~sgs~dg~I~iwd~~~~~~~~~~-~~h~~~v~~~~~~--~~~l-~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~ 400 (479)
++.++-+..+.|.+.+++ ++....+ .........++.+ ..+| ++-.... .|...+++...........-....
T Consensus 402 nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~ 480 (628)
T 4a0p_A 402 YIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPI 480 (628)
T ss_dssp EEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEE
T ss_pred eEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCcc
Confidence 455677778899999986 4544444 3344567788887 3344 4433232 566666654333222222222233
Q ss_pred eEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee--ccCceEEEEECCCceEEEEcCCCcEEEEEeccCC
Q 011711 401 VLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF--SRREVRVIETGPDGLFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 401 ~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~~~ 474 (479)
.+++ +++++.+.++-+..+.|...+++.. ....+. .......+++..+.++.+-.....|...+..+++
T Consensus 481 gla~----D~~~~~LYw~D~~~~~I~~~~~dG~-~r~~~~~~~~~~P~glav~~~~ly~tD~~~~~i~~~~k~~G~ 551 (628)
T 4a0p_A 481 ALAL----DSRLGKLFWADSDLRRIESSDLSGA-NRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGRE 551 (628)
T ss_dssp EEEE----ETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSCEEEEEEETTEEEEEETTTTEEEEEETTSSS
T ss_pred EEEE----eCCCCEEEEEeCCCCEEEEEeCCCC-ceEEEEcCCCCCcEEEEEECCEEEEEECCCCeEEEEECcCCC
Confidence 4444 4766656666666789999998653 333333 2345677887764466676677777766655443
No 327
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=94.93 E-value=2.2 Score=39.08 Aligned_cols=218 Identities=10% Similarity=0.015 Sum_probs=106.2
Q ss_pred ceeEEEe--CCCEEEEEcCCeEEEEEcCCCceEEec-----CCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCccc
Q 011711 235 EVGSLIC--EGPWVFVGMPNVVKAWHIESSAEFSLD-----GPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQ 307 (479)
Q Consensus 235 ~~~~~~~--~~~~l~~~~~~~i~v~~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 307 (479)
.+.++.+ .+..++++..+.| +...+.++..... .....+.++.+.++.+++++.+|.|+. ..+.+.. ++
T Consensus 37 ~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~t--W~ 112 (327)
T 2xbg_A 37 TILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQS--WS 112 (327)
T ss_dssp CEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEE-ESSTTSS--CE
T ss_pred cEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEE-ECCCCCC--ce
Confidence 3444444 4456667777765 3334444322211 124468889998876555666775543 2222222 33
Q ss_pred ceeeecCCCCCeEEEEEc-CCEEEEEeCCCeEEEEECCCCcEEEEE-eCCCCCcEEEEEc--CCEEEEEeCCCeEEE-EE
Q 011711 308 LAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTL-NGHTDAPMSLLCW--DQYLLSCSLDNTIKV-WI 382 (479)
Q Consensus 308 ~~~~~~~h~~~i~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~h~~~v~~~~~~--~~~l~s~s~dg~i~i-wd 382 (479)
.......+...+..+.+. ...++.++.+|.|.. ..+.++.-... ..+...+..+.+. +.+++. +.+|.+.. +|
T Consensus 113 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~-g~~G~~~~S~d 190 (327)
T 2xbg_A 113 QIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAV-SSRGSFYSTWE 190 (327)
T ss_dssp ECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEE-ETTSSEEEEEC
T ss_pred ECccccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEE-ECCCcEEEEeC
Confidence 322222233456777764 445555556665532 22334333332 3445567777776 445544 44555443 33
Q ss_pred cCCCcceEEecc-ccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-----ccCceEEEEECCCceE
Q 011711 383 MTEEGNLEVAYT-HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-----SRREVRVIETGPDGLF 456 (479)
Q Consensus 383 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-----~~~~v~~l~~s~~g~l 456 (479)
- .+........ .......+ ..++++. +++ ++.+|.+++.+.+.++.-..+. ....+..+.+.+++.+
T Consensus 191 ~-gG~tW~~~~~~~~~~~~~~----~~~~~g~-~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~ 263 (327)
T 2xbg_A 191 P-GQTAWEPHNRTTSRRLHNM----GFTPDGR-LWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEV 263 (327)
T ss_dssp T-TCSSCEEEECCSSSCEEEE----EECTTSC-EEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCE
T ss_pred C-CCCceeECCCCCCCcccee----EECCCCC-EEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEE
Confidence 2 1222222211 11222222 2357776 444 4467887776433232222111 2245889999988844
Q ss_pred EEEcCCCcE
Q 011711 457 FTGDGTGML 465 (479)
Q Consensus 457 ~sg~~dg~v 465 (479)
++++.+|.|
T Consensus 264 ~~~g~~g~i 272 (327)
T 2xbg_A 264 WLAGGAGAL 272 (327)
T ss_dssp EEEESTTCE
T ss_pred EEEeCCCeE
Confidence 444456766
No 328
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=94.80 E-value=2.6 Score=39.18 Aligned_cols=162 Identities=14% Similarity=0.163 Sum_probs=85.7
Q ss_pred CCCcEEEEEccCCCCCcccceeeecC-----CCCCeEEEEE----cCC-EEEEEe-C--CCeEEEEECCCC----cEEEE
Q 011711 289 QDGNILVWKGIPNTQNPFQLAALLKG-----HTRPVTCLAV----GGK-RLYSGS-M--DNTIRVWDLDTL----EAVMT 351 (479)
Q Consensus 289 ~dg~i~iwd~~~~~~~~~~~~~~~~~-----h~~~i~~l~~----~~~-~l~sgs-~--dg~I~iwd~~~~----~~~~~ 351 (479)
.+|.|.++|..+......+ +. +.+ ..-....|.+ ++. +|+++. . +.+|.+|+++.. ..+.+
T Consensus 81 ~~G~I~~~d~~~~~~~~~~-l~-~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~ 158 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSE-LE-IIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKT 158 (355)
T ss_dssp -CCEEEEEETTSSSCCEEE-CE-EECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEE
T ss_pred CCCeEEEEecCCCCCceEE-EE-ccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEec
Confidence 6899999998754322111 11 222 2234556665 232 344443 2 467778776543 22334
Q ss_pred EeCCC-CCcEEEEEc--CCEEEEEeC-----------------CCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCC
Q 011711 352 LNGHT-DAPMSLLCW--DQYLLSCSL-----------------DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPD 411 (479)
Q Consensus 352 ~~~h~-~~v~~~~~~--~~~l~s~s~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (479)
+.+.. .....+... |.+.++... .|.|..+|. ++ ...+...-...+.+++ +||
T Consensus 159 ~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~----spD 231 (355)
T 3sre_A 159 IRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINI----SPD 231 (355)
T ss_dssp ECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEE----CTT
T ss_pred cccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceE----CCC
Confidence 44322 234566665 555555431 244555544 22 2222222222233444 699
Q ss_pred CCcEEEEEeCCCeEEEeecCC-Cce--eeeeeccCceEEEEECC-Cc-eEEEE
Q 011711 412 GNPVLICSCNDDSVHLYELPS-FME--RGRIFSRREVRVIETGP-DG-LFFTG 459 (479)
Q Consensus 412 ~~~~l~s~~~dg~v~iwd~~~-~~~--~~~~~~~~~v~~l~~s~-~g-~l~sg 459 (479)
++.++++-+..+.|..|++.. +.. ...+......-.+++.+ +| +.+++
T Consensus 232 g~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 232 GKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred CCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEe
Confidence 987778777889999999863 222 11222256678889998 58 44444
No 329
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=94.65 E-value=3.5 Score=40.12 Aligned_cols=152 Identities=5% Similarity=-0.052 Sum_probs=85.5
Q ss_pred EEEEEc---CCEEEEEeCCCeEEEEECC-------CCcE-----------EEE-Ee-CCCCCcEEEEEc--CCEE-EEEe
Q 011711 320 TCLAVG---GKRLYSGSMDNTIRVWDLD-------TLEA-----------VMT-LN-GHTDAPMSLLCW--DQYL-LSCS 373 (479)
Q Consensus 320 ~~l~~~---~~~l~sgs~dg~I~iwd~~-------~~~~-----------~~~-~~-~h~~~v~~~~~~--~~~l-~s~s 373 (479)
..++++ +.++++-..++.|..+|+. ++.. ... +. ........++++ +++| ++-+
T Consensus 250 ~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~ 329 (496)
T 3kya_A 250 NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI 329 (496)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeC
Confidence 355664 4556667788899999997 5543 222 22 222345677776 6754 4445
Q ss_pred CCCeEEEEEcCCCc-ce---EEeccc---cC---------ccceEE-EeeeeC------CCCCcEEEEEeCCCeEEEeec
Q 011711 374 LDNTIKVWIMTEEG-NL---EVAYTH---NE---------DHGVLA-LGGLND------PDGNPVLICSCNDDSVHLYEL 430 (479)
Q Consensus 374 ~dg~i~iwd~~~~~-~~---~~~~~~---~~---------~~~~~~-~~~~~~------~~~~~~l~s~~~dg~v~iwd~ 430 (479)
....|+.++..... .+ ..+... .. ...... ..+..+ +++. ++++-..+.+|+.++.
T Consensus 330 ~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~-lyVaD~~N~rIr~i~~ 408 (496)
T 3kya_A 330 NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYD-FYFVDRLNFCVRKVTP 408 (496)
T ss_dssp TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEE-EEEEEGGGTEEEEECT
T ss_pred CCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCe-EEEEECCCCEEEEEeC
Confidence 67788887654321 11 122111 00 001111 111111 3444 6666677889999984
Q ss_pred CCCceeeeeec-------------------------cCceEEEEECCC-c-eEEEEcCCCcEEEEEeccCC
Q 011711 431 PSFMERGRIFS-------------------------RREVRVIETGPD-G-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 431 ~~~~~~~~~~~-------------------------~~~v~~l~~s~~-g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
++.. .++.. -.....|++.++ | ++++=..+..|+.++++...
T Consensus 409 -~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 409 -EGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp -TCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred -CCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 4432 22211 124778999996 7 77777778899999887644
No 330
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.44 E-value=2.9 Score=42.91 Aligned_cols=189 Identities=11% Similarity=0.042 Sum_probs=98.7
Q ss_pred eCCCEEEEEc-----CCeEEEEEcCCCceEEec---------CCCccEEEEEEc-CC-EEEEEeCC------CcEEEEEc
Q 011711 241 CEGPWVFVGM-----PNVVKAWHIESSAEFSLD---------GPVGEVYSMVVA-NE-MLFAGAQD------GNILVWKG 298 (479)
Q Consensus 241 ~~~~~l~~~~-----~~~i~v~~~~~~~~~~~~---------~~~~~v~~~~~~-~~-~l~~g~~d------g~i~iwd~ 298 (479)
.++.+++.|+ -+.+.+||+.++.-.... .....-....+. ++ +++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 4555555553 246888998887654333 111223344442 44 66666643 35788888
Q ss_pred cCCCCCcccceeeecCCCCCeEEEEE-cCCEEEEEeCCC--eEEEEECCCCcEEEEEe-----CCCCCcEEEEEc---CC
Q 011711 299 IPNTQNPFQLAALLKGHTRPVTCLAV-GGKRLYSGSMDN--TIRVWDLDTLEAVMTLN-----GHTDAPMSLLCW---DQ 367 (479)
Q Consensus 299 ~~~~~~~~~~~~~~~~h~~~i~~l~~-~~~~l~sgs~dg--~I~iwd~~~~~~~~~~~-----~h~~~v~~~~~~---~~ 367 (479)
.++. +.....+......-.+..+ ++..++.|+.++ .+.+||+.+.+-...-. .......++.+. +.
T Consensus 476 ~t~~---W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~ 552 (695)
T 2zwa_A 476 KTRE---WSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ 552 (695)
T ss_dssp TTTE---EEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTE
T ss_pred CCCc---EEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCE
Confidence 7753 2322222222233344444 677888887655 69999998865322111 011112334444 45
Q ss_pred EEEEEeC--C-----CeEEEEEcCCCcc-----eEEeccc--cCccceEEEeeeeCCCCCcEEEEEeC--------CCeE
Q 011711 368 YLLSCSL--D-----NTIKVWIMTEEGN-----LEVAYTH--NEDHGVLALGGLNDPDGNPVLICSCN--------DDSV 425 (479)
Q Consensus 368 ~l~s~s~--d-----g~i~iwd~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~--------dg~v 425 (479)
.++.|+. + +.+.+||+.+..- ...+... .......+.. ..++. +++.|+. ...|
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~---~~~~~-iyv~GG~~~~~~~~~~~~v 628 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKY---ITPRK-LLIVGGTSPSGLFDRTNSI 628 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEE---EETTE-EEEECCBCSSCCCCTTTSE
T ss_pred EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEE---eCCCE-EEEECCccCCCCCCCCCeE
Confidence 6667765 2 4688999987761 1222111 1111111111 12244 6666763 3568
Q ss_pred EEeecCCCcee
Q 011711 426 HLYELPSFMER 436 (479)
Q Consensus 426 ~iwd~~~~~~~ 436 (479)
.+||+.+.+-.
T Consensus 629 ~~yd~~t~~W~ 639 (695)
T 2zwa_A 629 ISLDPLSETLT 639 (695)
T ss_dssp EEEETTTTEEE
T ss_pred EEEECCCCeEE
Confidence 99999876543
No 331
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=94.41 E-value=0.021 Score=40.45 Aligned_cols=46 Identities=20% Similarity=0.396 Sum_probs=29.2
Q ss_pred cccccCCCc--ccccccccCCCc--ccccceeeeeecCccCCCCCCcccc
Q 011711 34 RERSLFNPV--NERAGGRVGGGW--PTKKVLCVYFLEGRCNRNPCRFAHT 79 (479)
Q Consensus 34 ~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~l~~ 79 (479)
+.||.+.++ +-|+.|..-.-. +....||.+|..|+|.|.+|+|+|.
T Consensus 15 FlrG~C~r~d~~C~f~H~~~~~~~~~~~~~vC~dflkG~C~r~~C~y~H~ 64 (83)
T 3d2n_A 15 FQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRCSRENCKYLHP 64 (83)
T ss_dssp GGGTCCCSCTTTCSSBCCCTTCCEETTEEECCHHHHTTCCCCSSCSSCCC
T ss_pred HhcCCCCCCCCCCCCcCCCccccccCCceeehhHhhhccccCCCcceeCC
Confidence 344667666 455555532100 1245788888888888888888885
No 332
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.91 E-value=0.012 Score=43.32 Aligned_cols=47 Identities=19% Similarity=0.410 Sum_probs=33.1
Q ss_pred cccccCCCcc--cccccccCC----CcccccceeeeeecCccCCCCCCccccc
Q 011711 34 RERSLFNPVN--ERAGGRVGG----GWPTKKVLCVYFLEGRCNRNPCRFAHTE 80 (479)
Q Consensus 34 ~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~l~~~ 80 (479)
+.||.+.++. =|+-|-.-. ..+.+..||.+|..|+|.|..|+|+|..
T Consensus 26 FlrG~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~ 78 (98)
T 2e5s_A 26 FQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPP 78 (98)
T ss_dssp HHHTCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHHTCCCCTTCCSBCCC
T ss_pred HhcCcCCCCCCCCCCcCCchhccccccCCccccchhhccCCCCCCCcCccCCh
Confidence 4457777773 455554321 0123668999999999999999999963
No 333
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.76 E-value=4.7 Score=38.19 Aligned_cols=140 Identities=14% Similarity=0.200 Sum_probs=86.0
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEecCC-----ce--eEEEeCCCEEEEEcCCeEEEEEcCCCce----------
Q 011711 202 LRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA-----EV--GSLICEGPWVFVGMPNVVKAWHIESSAE---------- 264 (479)
Q Consensus 202 ~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~i~v~~~~~~~~---------- 264 (479)
.++..++.+- ++.||.-++..+...+.+.... .+ ..+.++|.+++..++..|.+..+..+..
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccc
Confidence 3444444443 2566666666444444444431 23 3344588899988888988888763220
Q ss_pred -----EEec----CCCccEEEEEEcCC-----EEEEEeCCCcEEEEEccCCCCCcccc-----eeeecCCCCCeEEEEEc
Q 011711 265 -----FSLD----GPVGEVYSMVVANE-----MLFAGAQDGNILVWKGIPNTQNPFQL-----AALLKGHTRPVTCLAVG 325 (479)
Q Consensus 265 -----~~~~----~~~~~v~~~~~~~~-----~l~~g~~dg~i~iwd~~~~~~~~~~~-----~~~~~~h~~~i~~l~~~ 325 (479)
+.+. .....|..+.|+|- .|++-..|+.|++||+......+..+ ..........|.+++|.
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence 1111 13567999999975 89999999999999998744322200 01122334678899996
Q ss_pred --CCEEEEEe--CCCeEEEEE
Q 011711 326 --GKRLYSGS--MDNTIRVWD 342 (479)
Q Consensus 326 --~~~l~sgs--~dg~I~iwd 342 (479)
+-.|+..+ .+|.|+-.-
T Consensus 189 ~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEES
T ss_pred CCCcEEEEEecCCCCCEEEEC
Confidence 44455544 778887653
No 334
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=93.70 E-value=0.025 Score=40.58 Aligned_cols=23 Identities=35% Similarity=0.966 Sum_probs=17.3
Q ss_pred ccceeeeeecCccCCCCCCcccc
Q 011711 57 KKVLCVYFLEGRCNRNPCRFAHT 79 (479)
Q Consensus 57 ~~~~~~~~~~~~~~~~p~~~l~~ 79 (479)
...||.+|..|+|.|.+|+|+|.
T Consensus 50 ~~~vC~dflkG~C~r~~Cky~H~ 72 (89)
T 2rpp_A 50 RVIACFDSLKGRCSRENCKYLHP 72 (89)
T ss_dssp BEEBCHHHHHTCCCCTTCCSBCC
T ss_pred ceeeehhhhhCcCCCCCcceecC
Confidence 45777777778888777887775
No 335
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=93.67 E-value=0.019 Score=39.51 Aligned_cols=24 Identities=38% Similarity=0.922 Sum_probs=18.6
Q ss_pred ccceeeeeecCccCC-CCCCccccc
Q 011711 57 KKVLCVYFLEGRCNR-NPCRFAHTE 80 (479)
Q Consensus 57 ~~~~~~~~~~~~~~~-~p~~~l~~~ 80 (479)
+..||.||..|.|.+ ..|+|.|..
T Consensus 15 k~~vCk~fl~G~C~~G~~C~fsH~~ 39 (72)
T 2rhk_C 15 KTVVCKHWLRGLCKKGDQCEFLHEY 39 (72)
T ss_dssp CCSBCHHHHTTCCCCGGGSSSBCSC
T ss_pred cCeeCHHHhcCCCCCCCCCCCcccc
Confidence 557888888888888 578888863
No 336
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=93.65 E-value=0.036 Score=38.14 Aligned_cols=46 Identities=20% Similarity=0.385 Sum_probs=33.6
Q ss_pred ccccCCCc-ccccccccCCCcccccceeeeeec-CccCCCCCCcccccCCC
Q 011711 35 ERSLFNPV-NERAGGRVGGGWPTKKVLCVYFLE-GRCNRNPCRFAHTESQT 83 (479)
Q Consensus 35 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~l~~~~p~ 83 (479)
.+|.+..+ +=++-|.+... +..+|.||.. |.|.+..|+|+|...+.
T Consensus 23 l~G~C~~G~~C~fsH~~~~~---~~~~C~~f~~~G~C~~~~C~y~H~~p~~ 70 (72)
T 2rhk_C 23 LRGLCKKGDQCEFLHEYDMT---KMSECYFYSKFGECSNKECPFLHIDPES 70 (72)
T ss_dssp HTTCCCCGGGSSSBCSCCTT---SCCBCHHHHHHSCCSBTTCCSBCCCCC-
T ss_pred hcCCCCCCCCCCCccccccc---cCCcccccCCCCCCCCCCeeccCCCccc
Confidence 34777764 45555555433 6689999999 99999999999986654
No 337
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=93.40 E-value=4.9 Score=37.22 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=31.9
Q ss_pred CCCCcEEEEEeCCCeEEEeecCCCce------eeee-eccCceEEEEECCCc-eEEEE-cCCC
Q 011711 410 PDGNPVLICSCNDDSVHLYELPSFME------RGRI-FSRREVRVIETGPDG-LFFTG-DGTG 463 (479)
Q Consensus 410 ~~~~~~l~s~~~dg~v~iwd~~~~~~------~~~~-~~~~~v~~l~~s~~g-~l~sg-~~dg 463 (479)
.+|. ++++.-..+.|...+++.... ...+ .....+..+++.||| ++++. ..+|
T Consensus 276 ~~G~-l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~~~~g 337 (352)
T 2ism_A 276 FRGD-LYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTSNRDG 337 (352)
T ss_dssp ETTE-EEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEECSTTT
T ss_pred ECCE-EEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEeCCCC
Confidence 3455 666666677788777764321 1122 224578999999999 44443 3344
No 338
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=93.00 E-value=0.028 Score=39.78 Aligned_cols=23 Identities=39% Similarity=0.904 Sum_probs=20.6
Q ss_pred cceeeeeecCccCCC--CCCccccc
Q 011711 58 KVLCVYFLEGRCNRN--PCRFAHTE 80 (479)
Q Consensus 58 ~~~~~~~~~~~~~~~--p~~~l~~~ 80 (479)
..||++|..|+|+|. .|+|.|..
T Consensus 9 ~~VCr~FlrG~C~r~d~~C~f~H~~ 33 (83)
T 3d2n_A 9 LEVCREFQRGTCSRPDTECKFAHPS 33 (83)
T ss_dssp EEBCTTGGGTCCCSCTTTCSSBCCC
T ss_pred chhcHHHhcCCCCCCCCCCCCcCCC
Confidence 379999999999997 99999973
No 339
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=92.88 E-value=0.023 Score=38.95 Aligned_cols=23 Identities=43% Similarity=1.006 Sum_probs=20.6
Q ss_pred ccceeeeeecCccCCC--CCCcccc
Q 011711 57 KKVLCVYFLEGRCNRN--PCRFAHT 79 (479)
Q Consensus 57 ~~~~~~~~~~~~~~~~--p~~~l~~ 79 (479)
+..||.+|..|+|+|. .|+|.|.
T Consensus 5 k~~vC~~f~~G~C~rg~~~C~f~H~ 29 (70)
T 3d2q_A 5 RLEVCREYQRGNCNRGENDCRFAHP 29 (70)
T ss_dssp EEEBCHHHHTTCCSSCTTTCSSBCC
T ss_pred cchhCHHHhcCCCCCCCCCCCCccC
Confidence 4579999999999997 6999996
No 340
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.69 E-value=0.017 Score=42.42 Aligned_cols=24 Identities=46% Similarity=0.941 Sum_probs=21.2
Q ss_pred ccceeeeeecCccCCC--CCCccccc
Q 011711 57 KKVLCVYFLEGRCNRN--PCRFAHTE 80 (479)
Q Consensus 57 ~~~~~~~~~~~~~~~~--p~~~l~~~ 80 (479)
+..||++|..|+|+|. .|+|.|..
T Consensus 19 k~~VCr~FlrG~C~rgd~~C~FsH~~ 44 (98)
T 2e5s_A 19 KLEVCREFQRGNCARGETDCRFAHPA 44 (98)
T ss_dssp EEEBCSHHHHTCCSSHHHHCSSBCCS
T ss_pred hhhhhHHHhcCcCCCCCCCCCCcCCc
Confidence 5589999999999996 69999973
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.68 E-value=2.7 Score=43.16 Aligned_cols=186 Identities=15% Similarity=0.116 Sum_probs=95.5
Q ss_pred cCCEEEEEeCC----CcEEEEEccCCCCCccccee-e-----ecCCCCCeEEEEE--cCCEEEEEeCC------CeEEEE
Q 011711 280 ANEMLFAGAQD----GNILVWKGIPNTQNPFQLAA-L-----LKGHTRPVTCLAV--GGKRLYSGSMD------NTIRVW 341 (479)
Q Consensus 280 ~~~~l~~g~~d----g~i~iwd~~~~~~~~~~~~~-~-----~~~h~~~i~~l~~--~~~~l~sgs~d------g~I~iw 341 (479)
.+.+++.|+.+ ..+.+||..++. +.... . +......-.+..+ ++..++.|+.+ ..+.+|
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~---W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDK---IDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSC---EEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCe---EEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEE
Confidence 33466667643 468889987764 22222 1 1222223445566 66677777643 357889
Q ss_pred ECCCCcEEEE--EeCCCCCcEEEEE-cCCEEEEEeCCC--eEEEEEcCCCcceEEecc------ccCccceEEEeeeeCC
Q 011711 342 DLDTLEAVMT--LNGHTDAPMSLLC-WDQYLLSCSLDN--TIKVWIMTEEGNLEVAYT------HNEDHGVLALGGLNDP 410 (479)
Q Consensus 342 d~~~~~~~~~--~~~h~~~v~~~~~-~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 410 (479)
|+.+.+-... +......-..... .+..++.|+.++ .+.+||..+..- ..... .........+ +.
T Consensus 474 d~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W-~~~~~~g~~p~~r~~~~a~v~----~~ 548 (695)
T 2zwa_A 474 DMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIF-KDVTPKDEFFQNSLVSAGLEF----DP 548 (695)
T ss_dssp ETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEE-EECCCSSGGGGSCCBSCEEEE----ET
T ss_pred eCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCce-EEccCCCCCCCcccceeEEEE----eC
Confidence 9887543221 1111112233343 577778887655 689999877542 12211 1111111222 23
Q ss_pred CCCcEEEEEeC--C-----CeEEEeecCCCce--------eeeee-ccCceEEEEECCCc-eEEEEcC--------CCcE
Q 011711 411 DGNPVLICSCN--D-----DSVHLYELPSFME--------RGRIF-SRREVRVIETGPDG-LFFTGDG--------TGML 465 (479)
Q Consensus 411 ~~~~~l~s~~~--d-----g~v~iwd~~~~~~--------~~~~~-~~~~v~~l~~s~~g-~l~sg~~--------dg~v 465 (479)
+...+++.|+. + +.+.+||+.+..- +.... ....-.++....++ +++.||. ...|
T Consensus 549 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v 628 (695)
T 2zwa_A 549 VSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSI 628 (695)
T ss_dssp TTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSE
T ss_pred CCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeE
Confidence 32336666765 2 4689999987761 11111 11111223333325 6777764 3458
Q ss_pred EEEEeccC
Q 011711 466 SVWKILAK 473 (479)
Q Consensus 466 ~vw~~~~~ 473 (479)
.+||..+.
T Consensus 629 ~~yd~~t~ 636 (695)
T 2zwa_A 629 ISLDPLSE 636 (695)
T ss_dssp EEEETTTT
T ss_pred EEEECCCC
Confidence 88887653
No 342
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=92.43 E-value=2.3 Score=40.32 Aligned_cols=92 Identities=14% Similarity=0.185 Sum_probs=61.4
Q ss_pred CCeEEEEEcCCCcceEEecccc---C-ccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceee------------e
Q 011711 375 DNTIKVWIMTEEGNLEVAYTHN---E-DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERG------------R 438 (479)
Q Consensus 375 dg~i~iwd~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~------------~ 438 (479)
++.||.-++......+.+.... . .+..+.+ +|+|. +|+.. .+..|.|-.++.+.... .
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvl----SpsG~-lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~t 113 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVIS----STSGD-LLCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFH 113 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEE----CTTSS-EEEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEE
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEE----CCCCC-EEEEe-cCCeEEEEEecCccccCcccccccccceeE
Confidence 4677777776544444444431 2 3444445 59998 56655 46789999988432111 1
Q ss_pred ee-------ccCceEEEEECCCc----eEEEEcCCCcEEEEEecc
Q 011711 439 IF-------SRREVRVIETGPDG----LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 439 ~~-------~~~~v~~l~~s~~g----~l~sg~~dg~v~vw~~~~ 472 (479)
+. ...+|..+.|+|-+ .|++-..|+.|++||+..
T Consensus 114 y~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 114 YSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp EEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred EEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 11 13569999999965 899999999999999987
No 343
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.07 E-value=0.048 Score=38.14 Aligned_cols=26 Identities=35% Similarity=0.844 Sum_probs=21.0
Q ss_pred ccceeeeeecCccCC-CCCCcccccCC
Q 011711 57 KKVLCVYFLEGRCNR-NPCRFAHTESQ 82 (479)
Q Consensus 57 ~~~~~~~~~~~~~~~-~p~~~l~~~~p 82 (479)
+..||.||..|+|.+ ..|+|.|...+
T Consensus 9 k~~~C~~fl~G~C~~G~~C~fsH~~~~ 35 (77)
T 2d9n_A 9 KTVVCKHWLRGLCKKGDQCEFLHEYDM 35 (77)
T ss_dssp TTSBCHHHHTTCCSCTTSSSSBCSCCT
T ss_pred cceeCHhHccCcCCCCCCCCCcccccc
Confidence 558999999999998 56999997443
No 344
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=91.68 E-value=0.053 Score=39.88 Aligned_cols=24 Identities=33% Similarity=0.960 Sum_probs=21.2
Q ss_pred cccceeeeeecCccCCCC-CCcccc
Q 011711 56 TKKVLCVYFLEGRCNRNP-CRFAHT 79 (479)
Q Consensus 56 ~~~~~~~~~~~~~~~~~p-~~~l~~ 79 (479)
.+..+|.||..|.|.+.. |+|.|.
T Consensus 11 ~k~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 11 KKRELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp CCCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CCCccCcccccCcCCCCCCCCCCCC
Confidence 367899999999999975 999997
No 345
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=91.58 E-value=0.21 Score=46.19 Aligned_cols=107 Identities=9% Similarity=0.106 Sum_probs=55.4
Q ss_pred CEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEE-eCCCeEEEeecCCCceeeeeecc---
Q 011711 367 QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICS-CNDDSVHLYELPSFMERGRIFSR--- 442 (479)
Q Consensus 367 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~--- 442 (479)
..++.++.||.|.-.|..+++....+... .....+.......+.+..+++.. +.||.|..++..++.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 45666666777777776666555554433 10111111100011122244433 57999999998887655444321
Q ss_pred --CceEE---EEE------CCCceEEEEcCCCcEEEEEeccCC
Q 011711 443 --REVRV---IET------GPDGLFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 443 --~~v~~---l~~------s~~g~l~sg~~dg~v~vw~~~~~~ 474 (479)
.++.. ..+ +.++.+++|+.+|.+...|+.+++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~ 132 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE 132 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence 11221 001 245577888888877777766543
No 346
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=90.68 E-value=12 Score=35.60 Aligned_cols=233 Identities=9% Similarity=0.043 Sum_probs=125.4
Q ss_pred CceeEEEeCC-CEEEEEcCCeEEEEEcCCCce-------------EEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEc-
Q 011711 234 AEVGSLICEG-PWVFVGMPNVVKAWHIESSAE-------------FSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKG- 298 (479)
Q Consensus 234 ~~~~~~~~~~-~~l~~~~~~~i~v~~~~~~~~-------------~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~- 298 (479)
..+..+.+.+ ..++...++.|..|-....-. .........|..++......++-..||.|+.|-.
T Consensus 75 ~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~ 154 (423)
T 3mvd_K 75 PDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSF 154 (423)
T ss_dssp SSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECE
T ss_pred CCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCC
Confidence 3455666644 355566889999997543211 1111123468888888887778889999999985
Q ss_pred -cCCCC-----CcccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCC-----------------------cEE
Q 011711 299 -IPNTQ-----NPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTL-----------------------EAV 349 (479)
Q Consensus 299 -~~~~~-----~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~-----------------------~~~ 349 (479)
....+ ...............|..++......+.-..||.|+.|-.... .+.
T Consensus 155 ~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~ 234 (423)
T 3mvd_K 155 RDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPT 234 (423)
T ss_dssp ECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCE
T ss_pred CCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCe
Confidence 22110 0000111111234467888877777778889999999964321 111
Q ss_pred EEEeCCCCCcEEEEEcCCEEEEE-eCCCeEEEEEcCCCcceEE--------ec-cccCccceEEEeeeeCCCCCcEEEEE
Q 011711 350 MTLNGHTDAPMSLLCWDQYLLSC-SLDNTIKVWIMTEEGNLEV--------AY-THNEDHGVLALGGLNDPDGNPVLICS 419 (479)
Q Consensus 350 ~~~~~h~~~v~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~l~s~ 419 (479)
.........|..+.......+.. ..||.|..|-......+-. .. .......+..++ -|....++-
T Consensus 235 ~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia-----~G~~ht~al 309 (423)
T 3mvd_K 235 QLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIA-----GGQHHTVIL 309 (423)
T ss_dssp EECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEE-----ECSSEEEEE
T ss_pred EEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEE-----cccCeEEEE
Confidence 11112223456666655544444 6899999996544221110 00 000011122222 122234445
Q ss_pred eCCCeEEEeecCCCce------------eeeeec-cCceEEEEECCCceEEEEcCCCcEEEEEecc
Q 011711 420 CNDDSVHLYELPSFME------------RGRIFS-RREVRVIETGPDGLFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 420 ~~dg~v~iwd~~~~~~------------~~~~~~-~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~ 472 (479)
..||.|+.|=.+..-. ...+.. ...|..++......++ -..||.|+.|-...
T Consensus 310 t~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~a-lt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 310 TTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYA-VTIDGKLYSWGSGV 374 (423)
T ss_dssp ETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTEEEE-EETTSCEEEEECCT
T ss_pred eCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCeEEE-EcCCCCEEEECCCC
Confidence 6789999996543110 111111 2257777776554333 36789999997544
No 347
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=90.34 E-value=0.06 Score=38.60 Aligned_cols=24 Identities=38% Similarity=0.897 Sum_probs=21.0
Q ss_pred cceeeeeecCccCCC--CCCcccccC
Q 011711 58 KVLCVYFLEGRCNRN--PCRFAHTES 81 (479)
Q Consensus 58 ~~~~~~~~~~~~~~~--p~~~l~~~~ 81 (479)
..||+.|+.|+|+|. .|+|.|..-
T Consensus 17 ~~VCrdFlrG~C~r~d~~CrfsH~~~ 42 (89)
T 2rpp_A 17 LEVCRQFQRGTCSRSDEECKFAHPPK 42 (89)
T ss_dssp ECBCHHHHHTCCCCCTTTSSSBCCCS
T ss_pred hhhchHHhcCCCCCCCCCCCCcCCCc
Confidence 369999999999997 999999743
No 348
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.72 E-value=0.23 Score=34.63 Aligned_cols=45 Identities=20% Similarity=0.411 Sum_probs=33.3
Q ss_pred cccCCC-cccccccccCCCcccccceeeeeec-CccCCCCCCcccccCCC
Q 011711 36 RSLFNP-VNERAGGRVGGGWPTKKVLCVYFLE-GRCNRNPCRFAHTESQT 83 (479)
Q Consensus 36 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~l~~~~p~ 83 (479)
+|.+.. .+=++.|.+... +..+|.||.. |.|....|+|.|...+.
T Consensus 18 ~G~C~~G~~C~fsH~~~~~---~~~~C~~f~~~G~C~~~~C~f~H~~~~~ 64 (77)
T 2d9n_A 18 RGLCKKGDQCEFLHEYDMT---KMPECYFYSKFGECSNKECPFLHIDPES 64 (77)
T ss_dssp TTCCSCTTSSSSBCSCCTT---TSCBCHHHHHTCCCCCSSCSSBCCCTTS
T ss_pred cCcCCCCCCCCCccccccC---cCCCCcccCCCCccCCCCeeccCCCccc
Confidence 466665 345666665444 5679999999 99999999999986543
No 349
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=89.48 E-value=13 Score=34.37 Aligned_cols=136 Identities=16% Similarity=0.110 Sum_probs=71.0
Q ss_pred CCCeEEEEECCC--CcEE-EEEeC-----CCCCcEEEEEc----CC-EEEEE-eC--CCeEEEEEcCCCcceEEec-ccc
Q 011711 334 MDNTIRVWDLDT--LEAV-MTLNG-----HTDAPMSLLCW----DQ-YLLSC-SL--DNTIKVWIMTEEGNLEVAY-THN 396 (479)
Q Consensus 334 ~dg~I~iwd~~~--~~~~-~~~~~-----h~~~v~~~~~~----~~-~l~s~-s~--dg~i~iwd~~~~~~~~~~~-~~~ 396 (479)
.+|.|.++|+++ .+.. ..+.+ ..-....+... +. +|+.+ .. +.+|.+|+++......... ...
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 689999999974 2321 12232 11245555553 32 34444 33 5678888876543322222 111
Q ss_pred CccceEEEeeeeCCCCCcEEEEEe-----------------CCCeEEEeecCCCceeeeeeccCceEEEEECCCc--eEE
Q 011711 397 EDHGVLALGGLNDPDGNPVLICSC-----------------NDDSVHLYELPSFMERGRIFSRREVRVIETGPDG--LFF 457 (479)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~s~~-----------------~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g--~l~ 457 (479)
.......-.....++|. +.++.. ..|.|.-+|. ++.......-...+.++|+||+ +++
T Consensus 161 g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEE
Confidence 11100011112236776 555442 1244555554 3322222335668999999999 555
Q ss_pred EEcCCCcEEEEEecc
Q 011711 458 TGDGTGMLSVWKILA 472 (479)
Q Consensus 458 sg~~dg~v~vw~~~~ 472 (479)
+-+..+.|..|++..
T Consensus 238 adt~~~~I~~~~~~~ 252 (355)
T 3sre_A 238 AELLAHKIHVYEKHA 252 (355)
T ss_dssp EEGGGTEEEEEEECT
T ss_pred EeCCCCeEEEEEECC
Confidence 666788999999864
No 350
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=87.25 E-value=11 Score=38.25 Aligned_cols=112 Identities=11% Similarity=0.218 Sum_probs=68.3
Q ss_pred cEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccc-----------e-eeecC-----CCCCeEEEEEcCCEEEEEeCC
Q 011711 273 EVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQL-----------A-ALLKG-----HTRPVTCLAVGGKRLYSGSMD 335 (479)
Q Consensus 273 ~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-----------~-~~~~~-----h~~~i~~l~~~~~~l~sgs~d 335 (479)
+-.-.+.+++.++++-.||-+.-.+-..... +++ . ..+.+ ....|.++.++..++++-+.|
T Consensus 163 Ph~L~avs~~~liVsL~DGGLLrL~r~~~~d--~~~~~Fnd~s~l~SL~~lf~~~~~~~~~~~Is~~~~~~~fLftL~~D 240 (729)
T 3f7f_A 163 PHFLFYVSPQFSVVFLEDGGLLGLKKVDGVH--YEPLLFNDNSYLKCLTRFFSRSSKSDYDSVISCKLFHERYLIVLTQN 240 (729)
T ss_dssp EEEEEECSSSBEEEEETTSCEECCEESSSSC--EECCCCCCCGGGGGGSTTCCTTCSSCCCCEEEEEEETTTEEEEEETT
T ss_pred CcEEEEECCCeEEEEEcCCCEEEEEeccCCC--cceeeecCCchhhhhHHhhcCCCCCCcCceEEEeccCCcEEEEEEcC
Confidence 3445556666777777887776555432211 110 0 00111 223477778889999999999
Q ss_pred CeEEEEECCCCcEEEEEeCCCC-------------CcEEEEEcCCEEEEEe--CCCeEEEEEcCCC
Q 011711 336 NTIRVWDLDTLEAVMTLNGHTD-------------APMSLLCWDQYLLSCS--LDNTIKVWIMTEE 386 (479)
Q Consensus 336 g~I~iwd~~~~~~~~~~~~h~~-------------~v~~~~~~~~~l~s~s--~dg~i~iwd~~~~ 386 (479)
.++|+||+++++++.+..-... +-.-+...+.++++-+ ..|..++|.+...
T Consensus 241 h~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~~~~lv~y~P~~~G~Fk~~~l~~~ 306 (729)
T 3f7f_A 241 CHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYNNTLVTLLPLENGLFQMGTLLVD 306 (729)
T ss_dssp CEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEESSSEEEEEETTTTCEEEEEEEEC-
T ss_pred CeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhheeeEEEEEecCCCCeEEEEEEEEc
Confidence 9999999999999888764211 1112223355665444 4678889987543
No 351
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=86.20 E-value=6.6 Score=33.56 Aligned_cols=100 Identities=12% Similarity=-0.042 Sum_probs=57.7
Q ss_pred ccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCce------EEEEec-C-CceeEEEe--CCCEEEEEcCCeEEEEEcCCC
Q 011711 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS------ASVINL-G-AEVGSLIC--EGPWVFVGMPNVVKAWHIESS 262 (479)
Q Consensus 193 ~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~------~~~~~~-~-~~~~~~~~--~~~~l~~~~~~~i~v~~~~~~ 262 (479)
..+++++|+|+|.+.+. .+|.+.-.+..+.+. ...+-. . ....++.+ ++.+.++ .++.|.-++..+.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQS 117 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCS
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcC
Confidence 36779999998885555 667766666544221 111110 0 11234444 5555555 7788877765332
Q ss_pred ceE--------EecCCCccEEEEEEcCC-EEEEEeCCCcEEEE
Q 011711 263 AEF--------SLDGPVGEVYSMVVANE-MLFAGAQDGNILVW 296 (479)
Q Consensus 263 ~~~--------~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iw 296 (479)
... .-...-..+..+.+.|+ .|.+.. |+.++-.
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~ 159 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKA 159 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEec
Confidence 211 11222356789999999 676666 8886543
No 352
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=85.06 E-value=26 Score=33.01 Aligned_cols=273 Identities=12% Similarity=0.123 Sum_probs=148.9
Q ss_pred cccEEEEEeCCCCCEEEEEeCCCcEEEEECCCC-c----------eEEEEe--cCCceeEEEeCCCEEE-EEcCC-eEEE
Q 011711 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG-Q----------SASVIN--LGAEVGSLICEGPWVF-VGMPN-VVKA 256 (479)
Q Consensus 192 ~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~-~----------~~~~~~--~~~~~~~~~~~~~~l~-~~~~~-~i~v 256 (479)
...|..|+.- ..+.+.-..||.|..|=.... + ....+. ....+..+.+.....+ ...++ .|..
T Consensus 15 ~~~v~~ia~G--~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~ 92 (406)
T 4d9s_A 15 PRKVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYS 92 (406)
T ss_dssp CCCEEEEEEC--SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEE
T ss_pred ccceEEEecC--CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEE
Confidence 3456666653 445556667888888864331 1 111111 1234566666554443 45554 8999
Q ss_pred EEcCCCc---------eE---Eec-CCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCC-------cccceeeecCCC
Q 011711 257 WHIESSA---------EF---SLD-GPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQN-------PFQLAALLKGHT 316 (479)
Q Consensus 257 ~~~~~~~---------~~---~~~-~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~-------~~~~~~~~~~h~ 316 (479)
|-....- .. ... .....|..++......++-..||.|+.|-.....+. ...+........
T Consensus 93 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~ 172 (406)
T 4d9s_A 93 WGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEG 172 (406)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTT
T ss_pred EcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCC
Confidence 9643211 11 111 122368888888888888889999999975542210 011111111123
Q ss_pred CCeEEEEEcCCEEEEEeCCCeEEEEECCCC----------cEE-EEEeC-CCCCcEEEEEcCCEEEEEeCCCeEEEEEcC
Q 011711 317 RPVTCLAVGGKRLYSGSMDNTIRVWDLDTL----------EAV-MTLNG-HTDAPMSLLCWDQYLLSCSLDNTIKVWIMT 384 (479)
Q Consensus 317 ~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~----------~~~-~~~~~-h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~ 384 (479)
..|..++......+.-..||.|+.|-.... ... ..+.. ....+..++.-..+.+.-..||.|+.|-..
T Consensus 173 ~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n 252 (406)
T 4d9s_A 173 IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWS 252 (406)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCC
Confidence 367788777777778889999999964321 111 11111 224577777777888888899999999754
Q ss_pred CCcceE----------EeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCcee-----------ee--eec
Q 011711 385 EEGNLE----------VAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMER-----------GR--IFS 441 (479)
Q Consensus 385 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-----------~~--~~~ 441 (479)
...++- .............+++ |....++-..||.|+.|=.+..-.+ .. +..
T Consensus 253 ~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~-----G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 327 (406)
T 4d9s_A 253 KYGQLGHGDLEDHLIPHKLEALSNSFISQISG-----GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPD 327 (406)
T ss_dssp TTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE-----CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGG
T ss_pred CCCCCCCCCCcCccccEEecccCCCCEEEEEe-----cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccC
Confidence 432210 0011111111222321 2223444467899999965432111 01 112
Q ss_pred cCceEEEEECCCceEEEEcCCCcEEEEEecc
Q 011711 442 RREVRVIETGPDGLFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 442 ~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~ 472 (479)
...|..++..... .++-..||.|+.|-...
T Consensus 328 ~~~v~~va~G~~h-s~alt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 328 DQKVVQVSCGWRH-TLAVTERNNVFAWGRGT 357 (406)
T ss_dssp GCCEEEEEECSSE-EEEEETTSCEEEEECCT
T ss_pred CCcEEEEEeCCCe-EEEEeCCCCEEEecCCC
Confidence 3457777776554 33445789999997543
No 353
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=84.10 E-value=19 Score=30.82 Aligned_cols=179 Identities=13% Similarity=0.054 Sum_probs=85.1
Q ss_pred EEEEEeCCCcEEEEEccCCCCCcc--cceeeecCCCCCeEEEEEc-CCEEEEEeCCCeEEEEECCCCcE------EEEEe
Q 011711 283 MLFAGAQDGNILVWKGIPNTQNPF--QLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEA------VMTLN 353 (479)
Q Consensus 283 ~l~~g~~dg~i~iwd~~~~~~~~~--~~~~~~~~h~~~i~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~------~~~~~ 353 (479)
+|++..+| +++.=.........+ .....-.+-=..+..++|+ ...|+.. .+|.++-.+..+.+. -..+-
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG 83 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIG 83 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEec
Confidence 56666777 555443333332122 1111111112367789997 3334444 778877777654211 11221
Q ss_pred --CCCCCcEEEEEcC-CEEEEEeCCCeEEEEEcCCCcceEEecc-----c--cCccceEEEeeeeCCCCCcEEEEEeCCC
Q 011711 354 --GHTDAPMSLLCWD-QYLLSCSLDNTIKVWIMTEEGNLEVAYT-----H--NEDHGVLALGGLNDPDGNPVLICSCNDD 423 (479)
Q Consensus 354 --~h~~~v~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~l~s~~~dg 423 (479)
+-.. -.++.++. ..|..+ .||.|+-++-.+...-.-+.. . -... -.+.++|+|. |.+.. |+
T Consensus 84 ~~Gw~~-F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~----~~lff~p~G~--Lyav~-dg 154 (236)
T 1tl2_A 84 NGGWNQ-FQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGF----KFLFFHPNGY--LYAVH-GQ 154 (236)
T ss_dssp CSCGGG-CSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGE----EEEEECTTSC--EEEEE-TT
T ss_pred cccccc-ceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCce----EEEEECCCce--EEEEe-CC
Confidence 1111 24566662 333333 679988887543322111111 0 0122 2233469997 34444 78
Q ss_pred eEEEeecCCCcee-----eee-e--ccCceEEEEECCCceEEEEcCCCcEEEEEeccCCC
Q 011711 424 SVHLYELPSFMER-----GRI-F--SRREVRVIETGPDGLFFTGDGTGMLSVWKILAKPN 475 (479)
Q Consensus 424 ~v~iwd~~~~~~~-----~~~-~--~~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~~~~ 475 (479)
.++-...++.... ... . .-...+.+.|.+++.|.... +| ++|...++.+
T Consensus 155 ~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~-~g--~~Y~~~~p~~ 211 (236)
T 1tl2_A 155 QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ-GG--KFYEDYPPSY 211 (236)
T ss_dssp EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE-TT--EEEEESCCCS
T ss_pred cEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe-CC--eEEecCCccc
Confidence 7655444422211 111 1 12235567799999444444 77 5677655543
No 354
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=82.78 E-value=32 Score=32.37 Aligned_cols=233 Identities=12% Similarity=0.128 Sum_probs=130.7
Q ss_pred cCCceeEEEeCCC-EEEEEcCCeEEEEEcCCCceE-------------EecCCCccEEEEEEcCCEEEEEeCCCcEEEEE
Q 011711 232 LGAEVGSLICEGP-WVFVGMPNVVKAWHIESSAEF-------------SLDGPVGEVYSMVVANEMLFAGAQDGNILVWK 297 (479)
Q Consensus 232 ~~~~~~~~~~~~~-~l~~~~~~~i~v~~~~~~~~~-------------~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd 297 (479)
....+..+.+... .++...++.|..|-....-.+ ....-...|..++......++-..||.|+.|-
T Consensus 57 ~~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~~~i~~va~G~~hs~alt~~G~v~~wG 136 (413)
T 1a12_A 57 IPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWG 136 (413)
T ss_dssp CSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCCCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCCCcEEEEecCCCeEEEEcCCCcEEEee
Confidence 3445666666443 455668899999975432110 01112347888888888888888999999997
Q ss_pred c--cCCCC--------CcccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCC-cE------------------
Q 011711 298 G--IPNTQ--------NPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTL-EA------------------ 348 (479)
Q Consensus 298 ~--~~~~~--------~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~-~~------------------ 348 (479)
. ....+ ....+... .....|..++......+.-..||.|+.|-.... ++
T Consensus 137 ~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~ 214 (413)
T 1a12_A 137 SFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLER 214 (413)
T ss_dssp CEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHH
T ss_pred CCcCCCCccCcCCccccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccc
Confidence 5 21100 00011111 234578888877777777889999999965431 10
Q ss_pred --E-EEEeC------CCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcce-----------EEeccccC-ccceEEEeee
Q 011711 349 --V-MTLNG------HTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNL-----------EVAYTHNE-DHGVLALGGL 407 (479)
Q Consensus 349 --~-~~~~~------h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-----------~~~~~~~~-~~~~~~~~~~ 407 (479)
. ..+.. ....|..++.-..+.+.-..||.|+.|-.....++ ..+..... ......+++
T Consensus 215 ~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~- 293 (413)
T 1a12_A 215 LLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSG- 293 (413)
T ss_dssp HHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEE-
T ss_pred cccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEec-
Confidence 0 01111 22457777777778788889999999976543221 11111111 011223321
Q ss_pred eCCCCCcEEEEEeCCCeEEEeecCCCce------------eeeeeccCceEEEEECCCceEEEEcCCCcEEEEEecc
Q 011711 408 NDPDGNPVLICSCNDDSVHLYELPSFME------------RGRIFSRREVRVIETGPDGLFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 408 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~------------~~~~~~~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~ 472 (479)
|....++-..||.|+.|-.+..-. ...+.....|..++...+. .++-..||.|+.|-...
T Consensus 294 ----G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G~~h-s~alt~~G~v~~wG~n~ 365 (413)
T 1a12_A 294 ----GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASV-GYAVTKDGRVFAWGMGT 365 (413)
T ss_dssp ----CSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECSSE-EEEEETTSCEEEEECCT
T ss_pred ----ccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEECcce-EEEEeCCCCEEEecCCC
Confidence 112334445789999996543111 1111122367777776554 33444789999997643
No 355
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=81.20 E-value=40 Score=32.43 Aligned_cols=115 Identities=10% Similarity=0.087 Sum_probs=72.9
Q ss_pred CccEEEEEEcCCEEEEEeCCCcEEEEEccCC----------C-CCcccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEE
Q 011711 271 VGEVYSMVVANEMLFAGAQDGNILVWKGIPN----------T-QNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIR 339 (479)
Q Consensus 271 ~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~----------~-~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~ 339 (479)
...|..++......++-..||.|+.|-.... . .....+..........|..++......+.-..+|.|+
T Consensus 147 ~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~ 226 (473)
T 3of7_A 147 GHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVF 226 (473)
T ss_dssp TCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEE
T ss_pred CCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEE
Confidence 3578888888888888889999999975210 0 0001111111112235888888777888888999999
Q ss_pred EEECCCC-cE------------EEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCC
Q 011711 340 VWDLDTL-EA------------VMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTE 385 (479)
Q Consensus 340 iwd~~~~-~~------------~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~ 385 (479)
.|-.... ++ ..........|..++.-..+.+.-..+|.|+.|-...
T Consensus 227 ~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~ 285 (473)
T 3of7_A 227 AWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQ 285 (473)
T ss_dssp EEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECSSEEEEEETTSCEEEEEECT
T ss_pred EEeCCCCCCCCCCccccccccccCceecCCcceEEEecCCCeEEEEecCCCEEEeCCCC
Confidence 9965431 10 0000001145777777778888888999999996543
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.42 E-value=9.5 Score=40.70 Aligned_cols=41 Identities=20% Similarity=0.176 Sum_probs=35.8
Q ss_pred ccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 011711 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG 233 (479)
Q Consensus 193 ~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~ 233 (479)
..|.+++..++..+++|-+.|+++|+|++.+++++.+....
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 35677888888999999999999999999999999887653
No 357
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=79.99 E-value=5.7 Score=39.04 Aligned_cols=91 Identities=10% Similarity=0.023 Sum_probs=62.8
Q ss_pred eEEEEEcCC----Cc-ceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCce-------------eee
Q 011711 377 TIKVWIMTE----EG-NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFME-------------RGR 438 (479)
Q Consensus 377 ~i~iwd~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-------------~~~ 438 (479)
.+.+.|.+. .. ....+...+.++.+- + +|||++++++|-.+.++.++|+..... ..+
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~-v----sPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae 373 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCN-T----SSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE 373 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEE-E----CTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC
T ss_pred CeeEEccccccccCCceEEEEeCCCCCccee-e----CCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee
Confidence 467777765 22 223333344444433 3 499998888888999999999875221 222
Q ss_pred eeccCceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 439 IFSRREVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 439 ~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
....-.....+|.++| ...|---|..|.-|++..
T Consensus 374 ~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 374 PELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp CBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred ccCCCcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 2335567889999999 667777899999999975
No 358
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=77.79 E-value=39 Score=30.28 Aligned_cols=195 Identities=8% Similarity=0.011 Sum_probs=99.8
Q ss_pred CeEEEEEcCCCceEEecCCCccEEEEEEcCCEEEEEe--CC--CcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCC
Q 011711 252 NVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGA--QD--GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGK 327 (479)
Q Consensus 252 ~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~--~d--g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~ 327 (479)
..|+..++.+.+...+.... ...+....+.|+-.. .+ ..|+..++.... ...+..+.. ..+.+.++
T Consensus 88 ~~Iy~i~~dg~~~~~l~~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~------~~~lt~~~~--~~~~~~g~ 157 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLDPDP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE------KKKIKNHYL--FTCNTSDR 157 (302)
T ss_dssp EEEEEEETTSCCCEEEECSC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC------CEEEESSCC--CCSEEETT
T ss_pred CeEEEEeCCCCcceEeecCC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC------eEEEeCCCc--eEeeEECC
Confidence 36777788777655444332 335666677666554 33 445555554332 122222322 23456666
Q ss_pred EEEEEeC-CCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCCEEEEEeCC--CeEEEEEcCCCcceEEeccccCccceEEE
Q 011711 328 RLYSGSM-DNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLD--NTIKVWIMTEEGNLEVAYTHNEDHGVLAL 404 (479)
Q Consensus 328 ~l~sgs~-dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 404 (479)
.|+-.+. ...|...++..+.....+.+.. -..+.+.+.+|+-...+ ..|..-++..... ..+.. ... ..
T Consensus 158 ~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~~--~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~--~~~--~~- 229 (302)
T 3s25_A 158 YFYYNNPKNGQLYRYDTASQSEALFYDCNC--YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLTE--ANI--EH- 229 (302)
T ss_dssp EEEEECTTTCCEEEEETTTTEEEEEECSCE--EEEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECSC--SCE--EE-
T ss_pred EEEEEeCCCceEEEEECCCCCEEEEeCCCc--cceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEeC--CCc--ce-
Confidence 6665444 6789999988765443333211 12233457777765543 3565556654432 22221 111 12
Q ss_pred eeeeCCCCCcEEEEE-eCCCeEEEeecCCCceeeeeeccCceEEEEECCCceEEEEcCCCcEEEEE
Q 011711 405 GGLNDPDGNPVLICS-CNDDSVHLYELPSFMERGRIFSRREVRVIETGPDGLFFTGDGTGMLSVWK 469 (479)
Q Consensus 405 ~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g~l~sg~~dg~v~vw~ 469 (479)
++|+++.+..+. ...+.|..-+++... ...+.. ..+..+....+-...+--..+.|..-+
T Consensus 230 ---~~~~g~~Iy~~~~~~~~~i~~~~~DG~~-r~~l~~-~~~~~i~i~~d~Iy~td~~~~~i~~~~ 290 (302)
T 3s25_A 230 ---YNVYGSLIFYQRGGDNPALCVVKNDGTG-FKELAK-GEFCNINVTSQYVYFTDFVSNKEYCTS 290 (302)
T ss_dssp ---EEEETTEEEEEECSSSCEEEEEETTSCC-CEEEEE-SCEEEEEECSSEEEEEETTTCCEEEEE
T ss_pred ---EEECCCEEEEEECCCCcEEEEEECCCCc-cEEeeC-CccceEEEeCCEEEEEECCCCeEEEEE
Confidence 357787555443 234567777775433 233332 235566665444555655566654433
No 359
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=75.84 E-value=15 Score=37.31 Aligned_cols=39 Identities=10% Similarity=0.141 Sum_probs=32.6
Q ss_pred ccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 011711 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG 233 (479)
Q Consensus 193 ~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~ 233 (479)
..|.++.+ +..++++-+.|+++|+||+.+++++.+....
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~ 260 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDMV 260 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEETT
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeeccc
Confidence 34666555 4779999999999999999999999888773
No 360
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=72.20 E-value=63 Score=30.03 Aligned_cols=263 Identities=14% Similarity=0.155 Sum_probs=128.3
Q ss_pred CCEEEEEeCCCcEEEEECCC-C-------ceEEEEe-----cCCceeEEEeCCC-EEEEEcCCeEEEEEcCCCce-----
Q 011711 204 SDKLYSGSRDGTVQLWDCHT-G-------QSASVIN-----LGAEVGSLICEGP-WVFVGMPNVVKAWHIESSAE----- 264 (479)
Q Consensus 204 ~~~l~s~s~Dg~v~vwd~~~-~-------~~~~~~~-----~~~~~~~~~~~~~-~l~~~~~~~i~v~~~~~~~~----- 264 (479)
.+.++.-..||+|..|=... + ....... ....+..+..... .++...++.|..|-....-.
T Consensus 10 ~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~ 89 (389)
T 3kci_A 10 GRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGG 89 (389)
T ss_dssp -----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSS
T ss_pred cccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCC
Confidence 34455556677888885432 1 1111111 0123444554433 45567889999986543211
Q ss_pred ----E---EecC-CCccEEEEEE--cCCEEEEEeCCCcEEEEEccCCCC------Cc-ccceeeecCCCCCeEEEEEcCC
Q 011711 265 ----F---SLDG-PVGEVYSMVV--ANEMLFAGAQDGNILVWKGIPNTQ------NP-FQLAALLKGHTRPVTCLAVGGK 327 (479)
Q Consensus 265 ----~---~~~~-~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~------~~-~~~~~~~~~h~~~i~~l~~~~~ 327 (479)
. .... ....+..+.+ ..+..++-..||.|+.|-.....+ .. ..+..........|..++....
T Consensus 90 ~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~ 169 (389)
T 3kci_A 90 TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGA 169 (389)
T ss_dssp SCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS
T ss_pred cCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcC
Confidence 1 1111 1223333444 344777778899999997543211 00 1111111112336778887777
Q ss_pred EEEEEeCCCeEEEEECCC-Cc---------E-EEEEeC-CCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcce----
Q 011711 328 RLYSGSMDNTIRVWDLDT-LE---------A-VMTLNG-HTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNL---- 389 (479)
Q Consensus 328 ~l~sgs~dg~I~iwd~~~-~~---------~-~~~~~~-h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~---- 389 (479)
..+.-..||.|+.|-... ++ . ...+.. ....+..+++- ..+.+.-..||.|..|-......+
T Consensus 170 hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~ 249 (389)
T 3kci_A 170 HSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGG 249 (389)
T ss_dssp EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSS
T ss_pred eEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCC
Confidence 777888999999997532 11 1 111111 22346666664 367777889999999965432211
Q ss_pred ------EEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCcee-----------eeeec--cCceEEEEE
Q 011711 390 ------EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMER-----------GRIFS--RREVRVIET 450 (479)
Q Consensus 390 ------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-----------~~~~~--~~~v~~l~~ 450 (479)
..............+.+ |....++-..||.|+.|=....-.+ ..+.. ...|..++.
T Consensus 250 ~~~~~~p~~v~~~~~~~v~~v~~-----G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~ 324 (389)
T 3kci_A 250 SDGCKVPMKIDSLTGLGVVKVEC-----GSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT 324 (389)
T ss_dssp CCCEEEEEECGGGTTSCEEEEEE-----ETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE
T ss_pred CCCccccEEecccCCCcEEEEeC-----CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe
Confidence 11111111112223321 1123344467899999965432111 11111 245777776
Q ss_pred CCCceEEEEcCCCcEEEEEecc
Q 011711 451 GPDGLFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 451 s~~g~l~sg~~dg~v~vw~~~~ 472 (479)
.... .++-..||.|+.|-...
T Consensus 325 G~~h-~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 325 GSLH-CVCCTEDGEVYTWGDND 345 (389)
T ss_dssp CSSE-EEEEETTCCEEEEECCT
T ss_pred ccCe-EEEECCCCCEEEeeCCC
Confidence 6554 34446889999997653
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=70.22 E-value=31 Score=36.72 Aligned_cols=36 Identities=25% Similarity=0.255 Sum_probs=29.1
Q ss_pred CeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEe
Q 011711 318 PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLN 353 (479)
Q Consensus 318 ~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 353 (479)
.+.++... ..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 34455443 6689999999999999999999998764
No 362
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=69.00 E-value=69 Score=29.24 Aligned_cols=70 Identities=11% Similarity=0.086 Sum_probs=43.7
Q ss_pred ccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceeee---cCCCCCeEEEEEcC-----CEEEEEeCC------C
Q 011711 272 GEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALL---KGHTRPVTCLAVGG-----KRLYSGSMD------N 336 (479)
Q Consensus 272 ~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~---~~h~~~i~~l~~~~-----~~l~sgs~d------g 336 (479)
..-..+++.++ .++++..+|.|.+++ .+. .+.+..+ .........|+++. ..|+++... +
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~---~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGR---LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTE---EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCC---ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 34568888887 677777889999998 222 1112111 12244678899973 466655442 6
Q ss_pred eEEEEECCCC
Q 011711 337 TIRVWDLDTL 346 (479)
Q Consensus 337 ~I~iwd~~~~ 346 (479)
.|..++....
T Consensus 106 ~v~r~~~~~~ 115 (352)
T 2ism_A 106 QVVRLRHLGE 115 (352)
T ss_dssp EEEEEEECSS
T ss_pred EEEEEEeCCC
Confidence 7888887753
No 363
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=67.50 E-value=75 Score=29.07 Aligned_cols=69 Identities=9% Similarity=0.003 Sum_probs=41.4
Q ss_pred CCeEEEEEc-CCEEEEEeCCCeEEEEECCCCc-EEEEEe---CCCCCcEEEEEcC-----CEEEEEeC----C----CeE
Q 011711 317 RPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLE-AVMTLN---GHTDAPMSLLCWD-----QYLLSCSL----D----NTI 378 (479)
Q Consensus 317 ~~i~~l~~~-~~~l~sgs~dg~I~iwd~~~~~-~~~~~~---~h~~~v~~~~~~~-----~~l~s~s~----d----g~i 378 (479)
.....|++. ...|+++..+|.|+++|. +++ .+..+. ........++++. ..|+.+.. + +.|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 345678886 445666777899999973 444 222221 1224567888874 36655443 3 567
Q ss_pred EEEEcCCC
Q 011711 379 KVWIMTEE 386 (479)
Q Consensus 379 ~iwd~~~~ 386 (479)
..|+....
T Consensus 108 ~r~~~~~~ 115 (354)
T 3a9g_A 108 IRGRLDGS 115 (354)
T ss_dssp EEEEECSS
T ss_pred EEEEECCC
Confidence 77877643
No 364
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=65.84 E-value=2.3 Score=29.29 Aligned_cols=25 Identities=40% Similarity=0.810 Sum_probs=20.7
Q ss_pred ccceeeee-ecCccCC-CCCCcccccC
Q 011711 57 KKVLCVYF-LEGRCNR-NPCRFAHTES 81 (479)
Q Consensus 57 ~~~~~~~~-~~~~~~~-~p~~~l~~~~ 81 (479)
+..+|.+| +.|.|.. .-|+|.|..-
T Consensus 11 kt~~C~~f~~~G~C~~G~~C~f~H~~~ 37 (77)
T 1m9o_A 11 KTELCRTYSESGRCRYGAKCQFAHGLG 37 (77)
T ss_dssp CSCCCSGGGGTSCCTTTTTCSSCSSSC
T ss_pred cchhCHHhhhCCCcCCCCCccCCCCCh
Confidence 45899999 5899998 6799999743
No 365
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=63.53 E-value=98 Score=29.00 Aligned_cols=189 Identities=11% Similarity=0.057 Sum_probs=112.3
Q ss_pred cEEEEEeCCCCCEEEEEeCCCcEEEEECCCC-------------ceEEEEecCCceeEEEeCC-CEEEEEcCCeEEEEEc
Q 011711 194 AVSGIALPLRSDKLYSGSRDGTVQLWDCHTG-------------QSASVINLGAEVGSLICEG-PWVFVGMPNVVKAWHI 259 (479)
Q Consensus 194 ~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~-------------~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~i~v~~~ 259 (479)
.|..|+. .+.+.+.-..||.|..|-.... .....+.....+..+.+.. ..++...++.|..|-.
T Consensus 76 ~v~~va~--G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~ 153 (423)
T 3mvd_K 76 DAVDISA--GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGS 153 (423)
T ss_dssp SEEEEEE--CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred CceEEee--CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeC
Confidence 4666665 3556777788999999965321 1122233344566666644 4555678899999985
Q ss_pred --CCCceE-----------EecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCC------------------cccc
Q 011711 260 --ESSAEF-----------SLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQN------------------PFQL 308 (479)
Q Consensus 260 --~~~~~~-----------~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~------------------~~~~ 308 (479)
...-.+ ........|..++......++-..+|.|+.|-.....+. ...+
T Consensus 154 ~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p 233 (423)
T 3mvd_K 154 FRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRP 233 (423)
T ss_dssp EECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSC
T ss_pred CCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCC
Confidence 322111 111234568888888888888889999999975432110 0111
Q ss_pred eeeecCCCCCeEEEEEcCCEEEEE-eCCCeEEEEECCCC-----------cEEEEEeCCCCCcEEEEEcCCEEEEEeCCC
Q 011711 309 AALLKGHTRPVTCLAVGGKRLYSG-SMDNTIRVWDLDTL-----------EAVMTLNGHTDAPMSLLCWDQYLLSCSLDN 376 (479)
Q Consensus 309 ~~~~~~h~~~i~~l~~~~~~l~sg-s~dg~I~iwd~~~~-----------~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg 376 (479)
..........|..++......+.. ..||.|..|-.... ............|..++.-..+.+.-..||
T Consensus 234 ~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~ht~alt~~G 313 (423)
T 3mvd_K 234 TQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDL 313 (423)
T ss_dssp EEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSSEEEEEETTC
T ss_pred eEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccCeEEEEeCCC
Confidence 111122234566666654444443 68999999964321 111111112446777877778888888999
Q ss_pred eEEEEEcC
Q 011711 377 TIKVWIMT 384 (479)
Q Consensus 377 ~i~iwd~~ 384 (479)
.|+.|-..
T Consensus 314 ~v~~wG~n 321 (423)
T 3mvd_K 314 KCSVVGRP 321 (423)
T ss_dssp CEEEEECC
T ss_pred cEEEEECC
Confidence 99999654
No 366
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=63.12 E-value=1.1e+02 Score=29.27 Aligned_cols=56 Identities=7% Similarity=0.084 Sum_probs=31.9
Q ss_pred CCeEEEEEc--CCEEEEEeCC-CeEEEEECCCCcEE--EEEeC------CCCCcEEEEEc-----CCEEEEEe
Q 011711 317 RPVTCLAVG--GKRLYSGSMD-NTIRVWDLDTLEAV--MTLNG------HTDAPMSLLCW-----DQYLLSCS 373 (479)
Q Consensus 317 ~~i~~l~~~--~~~l~sgs~d-g~I~iwd~~~~~~~--~~~~~------h~~~v~~~~~~-----~~~l~s~s 373 (479)
.....|++. +.++++ ... +.|++++..+++.. ..+.. .......++++ +..|+.+.
T Consensus 27 ~~P~~~a~~pdG~l~V~-e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLT-ERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp SSEEEEEECTTSCEEEE-ETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCceEEEEcCCCcEEEE-EcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 345688885 555554 555 47998887655432 22221 13345678887 45555444
No 367
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=61.52 E-value=1.1e+02 Score=28.67 Aligned_cols=191 Identities=12% Similarity=0.135 Sum_probs=110.2
Q ss_pred ccEEEEEeCCCCCEEEEEeCC-CcEEEEECCCC---------ceEEEEe----cCCceeEEEeCCC-EEEEEcCCeEEEE
Q 011711 193 KAVSGIALPLRSDKLYSGSRD-GTVQLWDCHTG---------QSASVIN----LGAEVGSLICEGP-WVFVGMPNVVKAW 257 (479)
Q Consensus 193 ~~V~~l~~s~~~~~l~s~s~D-g~v~vwd~~~~---------~~~~~~~----~~~~~~~~~~~~~-~l~~~~~~~i~v~ 257 (479)
..|..|+.. ..+.+.-..| +.|..|-.... ....... ....+..+.+... .++...++.|..|
T Consensus 68 ~~i~~va~G--~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~w 145 (406)
T 4d9s_A 68 HQIVSVTCG--ADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSW 145 (406)
T ss_dssp SCEEEEEEC--SSEEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEE
T ss_pred CCEEEEEeC--cceEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEe
Confidence 357777754 3334434445 48999954321 1111111 1224566666444 5556788999999
Q ss_pred EcCCCce---------E---EecC-CCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCC-------cccceeeecCCCC
Q 011711 258 HIESSAE---------F---SLDG-PVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQN-------PFQLAALLKGHTR 317 (479)
Q Consensus 258 ~~~~~~~---------~---~~~~-~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~-------~~~~~~~~~~h~~ 317 (479)
-....-+ . .... ....|..++......++-..+|.|+.|-.....+. ...+.........
T Consensus 146 G~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~ 225 (406)
T 4d9s_A 146 GRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGE 225 (406)
T ss_dssp ECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTC
T ss_pred CCCCCccCCCCCCCCcccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCc
Confidence 7543211 1 1111 12368888888888888889999999975432210 0111111112234
Q ss_pred CeEEEEEcCCEEEEEeCCCeEEEEECCCC-c---------E-EEEEeC-CCCCcEEEEEcCCEEEEEeCCCeEEEEEcCC
Q 011711 318 PVTCLAVGGKRLYSGSMDNTIRVWDLDTL-E---------A-VMTLNG-HTDAPMSLLCWDQYLLSCSLDNTIKVWIMTE 385 (479)
Q Consensus 318 ~i~~l~~~~~~l~sgs~dg~I~iwd~~~~-~---------~-~~~~~~-h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~ 385 (479)
.|..++......+.-..||.|+.|-.... + . ...+.. ....|..++.-..+.+.-..||.|+.|=...
T Consensus 226 ~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~ 305 (406)
T 4d9s_A 226 KMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNK 305 (406)
T ss_dssp CEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred eEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCC
Confidence 67777777777777789999999975431 1 1 111211 2234677777777777788999999996544
No 368
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=60.92 E-value=6.7 Score=42.88 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=33.7
Q ss_pred cEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 011711 194 AVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG 233 (479)
Q Consensus 194 ~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~ 233 (479)
.+.+++..++..++++-+.|+++||||+.+++++.+....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 4455566678899999999999999999999999887754
No 369
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=58.03 E-value=3.4 Score=30.10 Aligned_cols=23 Identities=26% Similarity=0.725 Sum_probs=19.8
Q ss_pred ceeeee-ecCccCC-CCCCcccccC
Q 011711 59 VLCVYF-LEGRCNR-NPCRFAHTES 81 (479)
Q Consensus 59 ~~~~~~-~~~~~~~-~p~~~l~~~~ 81 (479)
.+|.|| ..|.|.. ..|+|.|...
T Consensus 37 ~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 37 FPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp SBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CcCcCcccCCcCCCCCCCcccCCCC
Confidence 589999 6999999 8899999744
No 370
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=57.71 E-value=22 Score=38.87 Aligned_cols=28 Identities=32% Similarity=0.323 Sum_probs=25.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEe
Q 011711 326 GKRLYSGSMDNTIRVWDLDTLEAVMTLN 353 (479)
Q Consensus 326 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 353 (479)
..++++-+.|+++|+||+.+++++.+..
T Consensus 249 ~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 249 YNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 6789999999999999999999988865
No 371
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=56.53 E-value=1.3e+02 Score=28.09 Aligned_cols=190 Identities=12% Similarity=0.040 Sum_probs=113.3
Q ss_pred ccEEEEEeCCCCCEEEEEeCCCcEEEEECCCC-c------------eEEEEecCCceeEEEeCC-CEEEEEcCCeEEEEE
Q 011711 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG-Q------------SASVINLGAEVGSLICEG-PWVFVGMPNVVKAWH 258 (479)
Q Consensus 193 ~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~-~------------~~~~~~~~~~~~~~~~~~-~~l~~~~~~~i~v~~ 258 (479)
..|..|+.. ..+.+.-..||.|..|-.... + ....+.....+..+.+.. ..++...++.|..|-
T Consensus 59 ~~i~~va~G--~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~~~i~~va~G~~hs~alt~~G~v~~wG 136 (413)
T 1a12_A 59 EDVVQAEAG--GMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWG 136 (413)
T ss_dssp SCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCeEEEEeC--CCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCCCcEEEEecCCCeEEEEcCCCcEEEee
Confidence 557777653 445566678899999965431 1 112223344566666644 345566889999997
Q ss_pred c--CCCceE------------EecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCc------------------c
Q 011711 259 I--ESSAEF------------SLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNP------------------F 306 (479)
Q Consensus 259 ~--~~~~~~------------~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~------------------~ 306 (479)
. ...-.+ ........|..++......++-..||.|+.|-.....+.. .
T Consensus 137 ~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~ 216 (413)
T 1a12_A 137 SFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLL 216 (413)
T ss_dssp CEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHH
T ss_pred CCcCCCCccCcCCccccccCCEEecCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccc
Confidence 5 221111 1112345678888888877788899999999765422100 0
Q ss_pred cce-eeecC----CCCCeEEEEEcCCEEEEEeCCCeEEEEECCCC-c---------E-EEEEeCC---CCCcEEEEEcCC
Q 011711 307 QLA-ALLKG----HTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTL-E---------A-VMTLNGH---TDAPMSLLCWDQ 367 (479)
Q Consensus 307 ~~~-~~~~~----h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~-~---------~-~~~~~~h---~~~v~~~~~~~~ 367 (479)
.+. ..+.. ....|..++-.....+.-..||.|+.|-.... + . ...+..- ...|..++.-..
T Consensus 217 ~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~ 296 (413)
T 1a12_A 217 VPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQH 296 (413)
T ss_dssp SCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSS
T ss_pred cCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccc
Confidence 010 00100 23467777777777777779999999976431 1 1 1111111 134777777777
Q ss_pred EEEEEeCCCeEEEEEcC
Q 011711 368 YLLSCSLDNTIKVWIMT 384 (479)
Q Consensus 368 ~l~s~s~dg~i~iwd~~ 384 (479)
+.+.-..||.|+.|-..
T Consensus 297 hs~al~~~G~v~~wG~n 313 (413)
T 1a12_A 297 HTVCMDSEGKAYSLGRA 313 (413)
T ss_dssp EEEEEETTSCEEEEECC
T ss_pred eEEEEeCCCCEEEeeCC
Confidence 77778899999999654
No 372
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=56.26 E-value=1.3e+02 Score=27.91 Aligned_cols=222 Identities=14% Similarity=0.142 Sum_probs=125.4
Q ss_pred eCCCCCeEEEeecCCCc----------eeeEEEec-ccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCC------c---
Q 011711 166 KGDECRFWHSWFCGEGF----------TMLAKLEG-HKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG------Q--- 225 (479)
Q Consensus 166 ~g~~d~~i~vw~~~~~~----------~~~~~~~~-H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~------~--- 225 (479)
.-..|+.+..|-....- .....+.. ....+..++.+......+.-..||.|..|-.... .
T Consensus 67 ~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~ 146 (389)
T 3kci_A 67 AVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSP 146 (389)
T ss_dssp EEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCC
T ss_pred EEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCcc
Confidence 33457888888654210 11111221 1234555666667777888889999999964321 0
Q ss_pred --eEEEEe-c-CCceeEEEeCC-CEEEEEcCCeEEEEEcCCCc---------eE---Eec-CCCccEEEEEEcC--CEEE
Q 011711 226 --SASVIN-L-GAEVGSLICEG-PWVFVGMPNVVKAWHIESSA---------EF---SLD-GPVGEVYSMVVAN--EMLF 285 (479)
Q Consensus 226 --~~~~~~-~-~~~~~~~~~~~-~~l~~~~~~~i~v~~~~~~~---------~~---~~~-~~~~~v~~~~~~~--~~l~ 285 (479)
....+. . ...+..+.+.. ..++...++.|..|-....- .. ... .....|..++... ...+
T Consensus 147 ~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~ 226 (389)
T 3kci_A 147 CDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTL 226 (389)
T ss_dssp EEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEE
T ss_pred CcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEE
Confidence 111111 1 12455666644 34556688999999754311 11 111 1234577777654 4677
Q ss_pred EEeCCCcEEEEEccCCCCC------c-ccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCC--------c---
Q 011711 286 AGAQDGNILVWKGIPNTQN------P-FQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTL--------E--- 347 (479)
Q Consensus 286 ~g~~dg~i~iwd~~~~~~~------~-~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~--------~--- 347 (479)
+-..||.|+.|-.....+. . ..+..........|..++......+.-..||.|+.|-.... .
T Consensus 227 ~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~ 306 (389)
T 3kci_A 227 CLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVR 306 (389)
T ss_dssp EEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEE
T ss_pred EEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCcccc
Confidence 7788999999975432110 0 01111111122357777776777777789999999975421 1
Q ss_pred EEEEEeC-CCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCc
Q 011711 348 AVMTLNG-HTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEG 387 (479)
Q Consensus 348 ~~~~~~~-h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 387 (479)
....+.. ....|..++.-..+.+....||.|+.|-.....
T Consensus 307 ~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~G 347 (389)
T 3kci_A 307 RPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEG 347 (389)
T ss_dssp EEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTS
T ss_pred CCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCC
Confidence 1111221 223577777777777778899999999766543
No 373
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=50.38 E-value=1.4e+02 Score=26.60 Aligned_cols=145 Identities=12% Similarity=0.115 Sum_probs=75.8
Q ss_pred CcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEe----CCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcC
Q 011711 291 GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGS----MDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD 366 (479)
Q Consensus 291 g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs----~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 366 (479)
..|+..++..... ..+. ......++..++.|+-.. .+..|...++.... ...+..+.. ..+.+.+
T Consensus 88 ~~Iy~i~~dg~~~------~~l~--~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~--~~~~~~g 156 (302)
T 3s25_A 88 NSLCRIKRNGHGS------TVLD--PDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL--FTCNTSD 156 (302)
T ss_dssp EEEEEEETTSCCC------EEEE--CSCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC--CCSEEET
T ss_pred CeEEEEeCCCCcc------eEee--cCCccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc--eEeeEEC
Confidence 4566666665532 1111 223345666777777655 34567777776443 344444433 3456678
Q ss_pred CEEEEEeC-CCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCC-CeEEEeecCCCceeeeeeccCc
Q 011711 367 QYLLSCSL-DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND-DSVHLYELPSFMERGRIFSRRE 444 (479)
Q Consensus 367 ~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~~~~ 444 (479)
+.|+-.+. ...|.+-++...... .+.. .... ..+ .|++..+..+...+ ..|..-++...... .+. ...
T Consensus 157 ~~iy~t~~g~~~Iy~~~l~g~~~~-~l~~--~~~~-~~~----~P~g~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt-~~~ 226 (302)
T 3s25_A 157 RYFYYNNPKNGQLYRYDTASQSEA-LFYD--CNCY-KPV----VLDDTNVYYMDVNRDNAIVHVNINNPNPV-VLT-EAN 226 (302)
T ss_dssp TEEEEECTTTCCEEEEETTTTEEE-EEEC--SCEE-EEE----EEETTEEEEEEGGGTTEEEEECSSSCCCE-ECS-CSC
T ss_pred CEEEEEeCCCceEEEEECCCCCEE-EEeC--CCcc-cee----eecCCEEEEEEcCCCcEEEEEECCCCCeE-EEe-CCC
Confidence 77776555 677888887665433 2222 1111 122 38888565554333 36666666654422 222 233
Q ss_pred eEEEEECCCc-eEEE
Q 011711 445 VRVIETGPDG-LFFT 458 (479)
Q Consensus 445 v~~l~~s~~g-~l~s 458 (479)
+. .++|++ .|.-
T Consensus 227 ~~--~~~~~g~~Iy~ 239 (302)
T 3s25_A 227 IE--HYNVYGSLIFY 239 (302)
T ss_dssp EE--EEEEETTEEEE
T ss_pred cc--eEEECCCEEEE
Confidence 33 356666 4443
No 374
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=48.80 E-value=1.6e+02 Score=26.84 Aligned_cols=31 Identities=23% Similarity=0.162 Sum_probs=22.9
Q ss_pred ccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCc
Q 011711 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ 225 (479)
Q Consensus 193 ~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~ 225 (479)
..-..|+|.|+|++++ +..+|.|++++ .+++
T Consensus 29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~ 59 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGK 59 (354)
T ss_dssp SCEEEEEEEETTEEEE-EETTTEEEEEC-SSCE
T ss_pred CCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCc
Confidence 4567899999998555 55669999997 4554
No 375
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=48.25 E-value=1.9e+02 Score=27.59 Aligned_cols=152 Identities=14% Similarity=0.121 Sum_probs=90.7
Q ss_pred CceeEEEeCC-CEEEEEcCCeEEEEEcC---CCc----------e---EEecC-CCccEEEEEEcCCEEEEEeCCCcEEE
Q 011711 234 AEVGSLICEG-PWVFVGMPNVVKAWHIE---SSA----------E---FSLDG-PVGEVYSMVVANEMLFAGAQDGNILV 295 (479)
Q Consensus 234 ~~~~~~~~~~-~~l~~~~~~~i~v~~~~---~~~----------~---~~~~~-~~~~v~~~~~~~~~l~~g~~dg~i~i 295 (479)
..+..+.+.. ..++...++.|..|-.. .++ . ..... ....|..++...+..++-..+|.|+.
T Consensus 148 ~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~ 227 (473)
T 3of7_A 148 HKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFA 227 (473)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEE
T ss_pred CcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEE
Confidence 4455566543 34556688999999751 111 0 01111 12348888888888888889999999
Q ss_pred EEccCCCCCccc--------ceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCC------------cEEE---EE
Q 011711 296 WKGIPNTQNPFQ--------LAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTL------------EAVM---TL 352 (479)
Q Consensus 296 wd~~~~~~~~~~--------~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~------------~~~~---~~ 352 (479)
|-.....+.... ...........|..++......+.-..+|.|+.|-.... ..+. .+
T Consensus 228 wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v 307 (473)
T 3of7_A 228 WGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRL 307 (473)
T ss_dssp EECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEEC
T ss_pred EeCCCCCCCCCCccccccccccCceecCCcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccc
Confidence 976543211000 000000011467777777777777788999999964321 1111 11
Q ss_pred eC-CCCCcEEEEEcCCEEEEEeCCCeEEEEEcCC
Q 011711 353 NG-HTDAPMSLLCWDQYLLSCSLDNTIKVWIMTE 385 (479)
Q Consensus 353 ~~-h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~ 385 (479)
.. ....|..++.-..+.+.-..||.|..|-...
T Consensus 308 ~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~ 341 (473)
T 3of7_A 308 ALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLD 341 (473)
T ss_dssp CCCTTCCEEEEEECSSEEEEEETTSCEEEEEECT
T ss_pred cccCCccEEEEEeCCCeEEEEeCCCeEEEEECCC
Confidence 11 1245777777777777778999999997544
No 376
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.72 E-value=6.2 Score=26.35 Aligned_cols=24 Identities=33% Similarity=0.874 Sum_probs=20.7
Q ss_pred ccceeeeeecCccCC-CCCCccccc
Q 011711 57 KKVLCVYFLEGRCNR-NPCRFAHTE 80 (479)
Q Consensus 57 ~~~~~~~~~~~~~~~-~p~~~l~~~ 80 (479)
+-..|.+|..|.|.. .-|.|-|.+
T Consensus 19 k~~LC~~~~~G~C~~G~~C~FAHG~ 43 (69)
T 2d9m_A 19 YFSICDRYMNGTCPEGNSCKFAHGN 43 (69)
T ss_dssp CCSBCHHHHHSCCSSCSSCSSBSSH
T ss_pred CcccCcccCcCCCCCCCccCCcCCH
Confidence 458999999999999 789999874
No 377
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=46.50 E-value=5 Score=34.80 Aligned_cols=26 Identities=27% Similarity=0.856 Sum_probs=21.2
Q ss_pred ccceeeeeecCccCCCC-CCcccccCCC
Q 011711 57 KKVLCVYFLEGRCNRNP-CRFAHTESQT 83 (479)
Q Consensus 57 ~~~~~~~~~~~~~~~~p-~~~l~~~~p~ 83 (479)
...+|.||-.|.|.+.- |+|+|. +|.
T Consensus 69 ~~~~C~ffakG~C~~G~~C~y~H~-lPt 95 (240)
T 3u1l_A 69 QLFFCLFFAKGMCCLGPKCEYLHH-IPD 95 (240)
T ss_dssp CCSBCHHHHTTCCSCGGGCSSBBS-CCC
T ss_pred CCeEcCccccCCCCCCCCCCccCC-CCC
Confidence 34699999999999955 999996 444
No 378
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=38.18 E-value=2.2e+02 Score=25.55 Aligned_cols=147 Identities=10% Similarity=0.012 Sum_probs=0.0
Q ss_pred CCEEEEEeCCCeEEEEECCC----CcEEEEEeCCCCCcEEEEEc-CCEEEEEeCCCeEEEEEc---------CCCcceEE
Q 011711 326 GKRLYSGSMDNTIRVWDLDT----LEAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIM---------TEEGNLEV 391 (479)
Q Consensus 326 ~~~l~sgs~dg~I~iwd~~~----~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~iwd~---------~~~~~~~~ 391 (479)
...+++.+.+|.|+--.+.. +..-..+.....-+..+... .+.|+..+..|.++-+.. ..+.++..
T Consensus 5 e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~ 84 (323)
T 1wp5_A 5 EDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIAN 84 (323)
T ss_dssp CEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGG
T ss_pred CcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhh
Q ss_pred eccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeec--------CCCceeeeeeccCceEEEEECCCc-eEEEEcCC
Q 011711 392 AYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL--------PSFMERGRIFSRREVRVIETGPDG-LFFTGDGT 462 (479)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~--------~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~d 462 (479)
............+.....-+....++..+.+|.++.-.+ ..+.....+...+.+..+....+. .++..+.+
T Consensus 85 ~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~ 164 (323)
T 1wp5_A 85 IIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHN 164 (323)
T ss_dssp TSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETT
T ss_pred ccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCC
Q ss_pred CcEEEEEecc
Q 011711 463 GMLSVWKILA 472 (479)
Q Consensus 463 g~v~vw~~~~ 472 (479)
|.+..++...
T Consensus 165 G~~irf~~~e 174 (323)
T 1wp5_A 165 GYALWFDESE 174 (323)
T ss_dssp SEEEEEEGGG
T ss_pred CcEEEEEHHH
No 379
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=37.68 E-value=2.3e+02 Score=25.53 Aligned_cols=189 Identities=14% Similarity=0.059 Sum_probs=94.4
Q ss_pred CccEEEEEEcC----C-EEEEEeCCCcEEEEEccCCCCCc--ccceeeecCCCCCeEEEEE-c-CCEEEEEeCCCeEEEE
Q 011711 271 VGEVYSMVVAN----E-MLFAGAQDGNILVWKGIPNTQNP--FQLAALLKGHTRPVTCLAV-G-GKRLYSGSMDNTIRVW 341 (479)
Q Consensus 271 ~~~v~~~~~~~----~-~l~~g~~dg~i~iwd~~~~~~~~--~~~~~~~~~h~~~i~~l~~-~-~~~l~sgs~dg~I~iw 341 (479)
...|.++...+ + .++..+.+|.|+--.+..-.... ......+.. .+.+..+.. + ...++..+..|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence 44566554432 2 89999999999998876532110 111122333 344444433 3 6778888999999888
Q ss_pred ECC--CCcE-------EEEEe-CCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcc-------eEEeccccCccceE
Q 011711 342 DLD--TLEA-------VMTLN-GHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGN-------LEVAYTHNEDHGVL 402 (479)
Q Consensus 342 d~~--~~~~-------~~~~~-~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~ 402 (479)
... .-.. +.-+. ...+.|.++... +..++..+..|.++.-.+..-.. +..+.........+
T Consensus 173 ~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv 252 (327)
T 3uc1_A 173 SATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLV 252 (327)
T ss_dssp ECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEE
T ss_pred ECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEE
Confidence 876 3111 11111 123456666554 56899999999999887643211 11111111011222
Q ss_pred EEeeeeCCCCCcEEEEEeCCCeEEEeecCCCce---------eeeeeccCceEEEEECCCc--eEEEEcCCC
Q 011711 403 ALGGLNDPDGNPVLICSCNDDSVHLYELPSFME---------RGRIFSRREVRVIETGPDG--LFFTGDGTG 463 (479)
Q Consensus 403 ~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~---------~~~~~~~~~v~~l~~s~~g--~l~sg~~dg 463 (479)
.. .....+ . -++..+.+|.+..++...-.. ...+...+.|.++...+.. .+++.+++|
T Consensus 253 ~~-~~~~~~-~-~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 253 GA-LIVDDD-S-ELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANG 321 (327)
T ss_dssp EE-EEECTT-C-EEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC-------------
T ss_pred EE-EEeCCC-c-cEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecCC
Confidence 22 222233 3 344455677777776543222 2222335667777666543 566655555
No 380
>1bhu_A SMPI, metalloproteinase inhibitor; signal; NMR {Streptomyces nigrescens} SCOP: b.11.1.3
Probab=33.14 E-value=14 Score=24.58 Aligned_cols=32 Identities=28% Similarity=0.306 Sum_probs=20.5
Q ss_pred cccccCCCcccccccccCCCcccccceeeeeecCccCCCCCCccc
Q 011711 34 RERSLFNPVNERAGGRVGGGWPTKKVLCVYFLEGRCNRNPCRFAH 78 (479)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~ 78 (479)
.-|++-|+-. +..|.|+. |.-.|.|+||--+.
T Consensus 42 sarsfangth--ftlrygpa-----------rkvtcvrfpcyqya 73 (102)
T 1bhu_A 42 SARSFANGTH--FTLRYGPA-----------RKVTCVRFPCYQYA 73 (102)
T ss_dssp TTCBEECSSC--CEEEEEEC-----------CCCCCSSSCCCSSC
T ss_pred hhhhccCCce--EEEeecCc-----------eeeEEEeecceeee
Confidence 4455555544 55677776 55678999995433
No 381
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=31.73 E-value=2.9e+02 Score=24.95 Aligned_cols=58 Identities=24% Similarity=0.444 Sum_probs=36.6
Q ss_pred CCCcEEEEEeCCCeEEEeecCCCceeee--ee-c-cCceEEEEECCCc-eEEEEc-CCCcEEEEEec
Q 011711 411 DGNPVLICSCNDDSVHLYELPSFMERGR--IF-S-RREVRVIETGPDG-LFFTGD-GTGMLSVWKIL 471 (479)
Q Consensus 411 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~~-~-~~~v~~l~~s~~g-~l~sg~-~dg~v~vw~~~ 471 (479)
+|. ++++.-..+.|...+++.++.... +. . ...+..+++.||| ++++.. .+| +||.+.
T Consensus 288 ~g~-l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g--~I~ri~ 351 (353)
T 2g8s_A 288 QQK-LFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSG--ELLKVS 351 (353)
T ss_dssp TTE-EEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTE--EEEEEE
T ss_pred CCc-EEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCC--EEEEEe
Confidence 354 667666778888888876543322 21 1 3579999999999 544433 455 456664
No 382
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=29.31 E-value=3.7e+02 Score=25.41 Aligned_cols=36 Identities=6% Similarity=0.056 Sum_probs=26.1
Q ss_pred ccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEE
Q 011711 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSAS 228 (479)
Q Consensus 193 ~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~ 228 (479)
..-.+|+|.|+|+++++-...+.|++++..+++...
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~ 62 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT 62 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE
Confidence 456799999999977765544578888876665443
No 383
>2e2s_A Agelenin; cystine knot, presynaptic calcium channel inhibitor, toxin; NMR {Allagelena opulenta}
Probab=25.38 E-value=11 Score=20.70 Aligned_cols=26 Identities=19% Similarity=0.509 Sum_probs=22.7
Q ss_pred CeEEEeccCCeeEeCCCCCeEEEeec
Q 011711 153 KNVCYHWLSGNCVKGDECRFWHSWFC 178 (479)
Q Consensus 153 ~~~c~~~~~~~~~~g~~d~~i~vw~~ 178 (479)
...|..|.+..|-+|-..+.+.||+.
T Consensus 7 n~fCn~~sGPrCCsgl~CKeL~iW~s 32 (36)
T 2e2s_A 7 NRFCNALSGPRCCSGLKCKELSIWDS 32 (36)
T ss_dssp TSCCCSSSSCCBCTTCCEEEEETTEE
T ss_pred CCCcccccCCcccCCCceeeeeeehh
Confidence 46788889999999999999999985
No 384
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=21.87 E-value=4.7e+02 Score=24.09 Aligned_cols=135 Identities=11% Similarity=0.119 Sum_probs=72.1
Q ss_pred CeEEEEECCCC--cEEEEEeCC------CCCcEEEEEc---------CCEEEEEe-CCCeEEEEEcCCCcceEEeccccC
Q 011711 336 NTIRVWDLDTL--EAVMTLNGH------TDAPMSLLCW---------DQYLLSCS-LDNTIKVWIMTEEGNLEVAYTHNE 397 (479)
Q Consensus 336 g~I~iwd~~~~--~~~~~~~~h------~~~v~~~~~~---------~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~ 397 (479)
-+|.+||+.+. +.++++.-. .+....+.++ +.++..+. ..+-|.|+|+.+++..+.+...-.
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 36788899988 888877643 2235566665 23444443 467899999998876555421111
Q ss_pred ccc--------------eEEEeeeeCCC----CCcEEEEEeCCCeEEEeecCC-----Cce---eeeeecc---CceEEE
Q 011711 398 DHG--------------VLALGGLNDPD----GNPVLICSCNDDSVHLYELPS-----FME---RGRIFSR---REVRVI 448 (479)
Q Consensus 398 ~~~--------------~~~~~~~~~~~----~~~~l~s~~~dg~v~iwd~~~-----~~~---~~~~~~~---~~v~~l 448 (479)
... .-.+.+..+|+ ++.+....-... ++|.+++ ... +..+... ..-..+
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~--~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~ 280 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI--KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIAL 280 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS--EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC--cEEEEEHHHhhCcchhhceEEeeecCCCCCcceE
Confidence 100 01111222454 443433333222 3333321 111 1111112 233456
Q ss_pred EEC-CCc-eEEEEcCCCcEEEEEecc
Q 011711 449 ETG-PDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 449 ~~s-~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
++. .+| ++++--....|..|+...
T Consensus 281 ~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 281 AYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 775 677 778888889999999765
Done!