BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011712
(479 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 2.5.
pdb|1KSC|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 5.6.
pdb|1KSD|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 6.5
Length = 433
Score = 202 bits (515), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 134/339 (39%), Positives = 180/339 (53%), Gaps = 43/339 (12%)
Query: 1 MTTDRRAYKIDPSNPGSDLAGETXXXXXXXSIVFRHSDPAYSSELLRHAYQLFDFADKYR 60
MT R AYKID S PGSDLAGET SIVFR+ D YS+ LL HA QLFDFA+ YR
Sbjct: 133 MTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYSNNLLTHARQLFDFANNYR 192
Query: 61 GKYDGSITVAQKYYRSISGYNDELLWAAAWLYQASGNQHYLDYLGKNGDSMGGTGWGMTE 120
GKY SIT A+ +Y S + Y DEL+WAAAWLY+A+ + YL+ D G WG
Sbjct: 193 GKYSDSITDARNFYAS-ADYRDELVWAAAWLYRATNDNTYLNTAESLYDEFGLQNWG-GG 250
Query: 121 FGWDVKYPGVQTLVAKFLMQGKAGHYAPVFERYQQKAEYFMCSCLGKGSRNVQKTPGGLI 180
WD K GVQ L+AK + + Y+ + ++ + N QKTP GL+
Sbjct: 251 LNWDSKVSGVQVLLAKLTNK----------QAYKDTVQSYVNYLI----NNQQKTPKGLL 296
Query: 181 FRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQVDYILGDNP 240
+ W ++ +A+F+ L+ + ++ + FA++Q+DY LGD
Sbjct: 297 YIDMWGTLRHAANAAFIM-------------LEAAELGLSASSYRQFAQTQIDYALGDGG 343
Query: 241 RATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDPN--LLVGAV 298
R S++ G+G+N P R HHR+SS P+ +C W + DPN +L GA+
Sbjct: 344 R--SFVCGFGSNPPTRPHHRSSSCP-----PAPATC-----DWNTFNSPDPNYHVLSGAL 391
Query: 299 VGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLNA 337
VGGPD DN+ D R +Y E AT NA LA L A
Sbjct: 392 VGGPDQNDNYVDDRSDYVHNEVATDYNAGFQSALAALVA 430
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive
Endoglucanase From Separately Expressed Gh9 And Cbm3c
Modules
Length = 466
Score = 168 bits (425), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 118/344 (34%), Positives = 168/344 (48%), Gaps = 48/344 (13%)
Query: 1 MTTDRRAYKIDPSNPGSDLAGETXXXXXXXSIVFRHSDPAYSSELLRHAYQLFDFADKYR 60
M +R +YK+D S+PGS + ET SI+F+ D YS E L+HA +LF+FAD
Sbjct: 155 MPMERPSYKVDRSSPGSTVVAETSAALAIASIIFKKVDGEYSKECLKHAKELFEFADT-- 212
Query: 61 GKYDGSITVAQKYYRSISGYNDELLWAAAWLYQASGNQHYLDYLGKNGDSMG-GTGWGMT 119
K D T A +Y S SG+ DEL WAA WLY A+ + YLD D G +
Sbjct: 213 TKSDDGYTAANGFYNSWSGFYDELSWAAVWLYLATNDSSYLDKAESYSDKWGYEPQTNIP 272
Query: 120 EFGW-----DVKYPGVQTLVAKFLMQGKAGHYAPVFERYQQKAEYFMCSCLGKGSRNVQK 174
++ W DV Y G L+A+ ++ G Y ER + G +
Sbjct: 273 KYKWAQCWDDVTY-GTYLLLAR--IKNDNGKYKEAIER------HLDWWTTGYNGERITY 323
Query: 175 TPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQVDY 234
TP GL + +W ++++ T+ +FLA VYSD+ K L FA+SQ DY
Sbjct: 324 TPKGLAWLDQWGSLRYATTTAFLACVYSDWENGDKEKAKT---------YLEFARSQADY 374
Query: 235 ILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDP--- 291
LG R S++VG+G N P+R HHR + + +W S+ P
Sbjct: 375 ALGSTGR--SFVVGFGENPPKRPHHRTA-----------------HGSWADSQMEPPEHR 415
Query: 292 NLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARL 335
++L GA+VGGPD+ DN+ D NY E A NA +G+LA++
Sbjct: 416 HVLYGALVGGPDSTDNYTDDISNYTCNEVACDYNAGFVGLLAKM 459
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|1JS4|B Chain B, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|4TF4|A Chain A, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|4TF4|B Chain B, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|3TF4|A Chain A, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|3TF4|B Chain B, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|1TF4|A Chain A, EndoEXOCELLULASE FROM THERMOMONOSPORA
pdb|1TF4|B Chain B, EndoEXOCELLULASE FROM THERMOMONOSPORA
Length = 605
Score = 164 bits (415), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 120/351 (34%), Positives = 174/351 (49%), Gaps = 48/351 (13%)
Query: 1 MTTDRRAYKIDPSNPGSDLAGETXXXXXXXSIVFRHSDPAYSSELLRHAYQLFDFADKYR 60
M +R ++K+DPS PGSD+A ET SIVF DPAY++ L++HA QL+ FAD YR
Sbjct: 134 MPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYAATLVQHAKQLYTFADTYR 193
Query: 61 GKYDGSITVAQKYYRSISGYNDELLWAAAWLYQASGNQHYL-------DYLGKNGDS-MG 112
G Y + A +Y S SGY DEL+W A WLY+A+G+ YL D+L + +
Sbjct: 194 GVYSDCVP-AGAFYNSWSGYQDELVWGAYWLYKATGDDSYLAKAEYEYDFLSTEQQTDLR 252
Query: 113 GTGWGMTEFGWDVKYPGVQTLVAKFLMQGKAGHYAPVFERYQQKAEYFMCS-CLGKGSRN 171
W + WD K G L+AK GK ++Y A ++ +G +
Sbjct: 253 SYRWTI---AWDDKSYGTYVLLAK--ETGK--------QKYIDDANRWLDYWTVGVNGQR 299
Query: 172 VQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQ 231
V +PGG+ W +++ + +F+A VY+ + R + FA Q
Sbjct: 300 VPYSPGGMAVLDTWGALRYAANTAFVALVYAKVIDDPVRKQRYH----------DFAVRQ 349
Query: 232 VDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDP 291
++Y LGDNPR +SY+VG+GNN P+ HHR + G + +S +
Sbjct: 350 INYALGDNPRNSSYVVGFGNNPPRNPHHR--------------TAHGSWTDSIASPAENR 395
Query: 292 NLLVGAVVGGP-DAYDNFGDRRDNYEQTEPATYNNAPILGILARLNAGHGG 341
++L GA+VGGP D + D R +Y E AT NA LA L +GG
Sbjct: 396 HVLYGALVGGPGSPNDAYTDDRQDYVANEVATDYNAGFSSALAMLVEEYGG 446
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module
pdb|4DOE|A Chain A, The Liganded Structure Of Cbescii Cela Gh9 Module
Length = 475
Score = 134 bits (338), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 168/352 (47%), Gaps = 53/352 (15%)
Query: 1 MTTDRRAYKIDPSNPGSDLAGETXXXXXXXSIVFRHSDPAYSSELLRHAYQLFDFADKYR 60
M +R ++K+ S+PGS + ET SIV + +P ++ L+HA +L++FA+
Sbjct: 156 MQMERPSFKVTQSSPGSTVVAETAASLAAASIVLKDRNPTKAATYLQHAKELYEFAE--V 213
Query: 61 GKYDGSITVAQKYYRSISGYNDELLWAAAWLYQASGNQHYL---DYLGKNGDSMGGTG-- 115
K D T A YY S SG+ DEL WAA WLY A+ + YL + +N + G+
Sbjct: 214 TKSDAGYTAANGYYNSWSGFYDELSWAAVWLYLATNDSTYLTKAESYVQNWPKISGSNTI 273
Query: 116 ---WGMTEFGWDVKYPGVQTLVAKFLMQGKAGHYAPVFERYQQKAE-YFMCSCLGKGSRN 171
W WD + G L+AK + GK + Y+Q E + G
Sbjct: 274 DYKWAHC---WDDVHNGAALLLAK--ITGK--------DIYKQIIESHLDYWTTGYNGER 320
Query: 172 VQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQ 231
++ TP GL + +W ++++ T+ +FLA VYSD++ + F +SQ
Sbjct: 321 IKYTPKGLAWLDQWGSLRYATTTAFLAFVYSDWVGCPSTKKEI---------YRKFGESQ 371
Query: 232 VDYILGDNPRATSYMVGYGNNYPQRVHHRA--SSIVSIKVNPSFVSCRGGYATWFSSKGS 289
+DY LG R S++VG+G N P+R HHR SS + PS+
Sbjct: 372 IDYALGSAGR--SFVVGFGTNPPKRPHHRTAHSSWADSQSIPSY---------------- 413
Query: 290 DPNLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLNAGHGG 341
+ L GA+VGGP + D++ D NY E A NA +G LA++ +GG
Sbjct: 414 HRHTLYGALVGGPGSDDSYTDDISNYVNNEVACDYNAGFVGALAKMYQLYGG 465
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 131 bits (330), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 160/347 (46%), Gaps = 48/347 (13%)
Query: 2 TTDRRAYKIDPSNPGSDLAGETXXXXXXXSIVFRHSDPAYSSELLRHAYQLFDFADKY-R 60
T RR + I PG+D+ T + F+ +DP Y+++ L +A LFDFA+K +
Sbjct: 201 TMFRRGWFITKEKPGTDIISATAASLAINYMNFKDTDPQYAAKSLDYAKALFDFAEKNPK 260
Query: 61 GKYDGSITVAQKYYRSISGYNDELLWAAAWLYQASGNQHYLDYLGKNGDSMGGTGWGMTE 120
G G K Y S + D+ WAAAWLY A+ N+HYLD K D GW
Sbjct: 261 GVVQGED--GPKGYYGSSKWQDDYCWAAAWLYLATQNEHYLDEAFKYYDYYAPPGWIHC- 317
Query: 121 FGWDVKYPGVQTLVAKF--LMQGKAGHYAPVFERYQQKAEYFMCS-------CLGKGSRN 171
W+ + G ++A+ L + ++ ++R K ++ L K S
Sbjct: 318 --WNDVWSGTACILAEINDLYDKDSQNFEDRYKRASNKNQWEQIDFWKPIQDLLDKWSGG 375
Query: 172 -VQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKS 230
+ TPGG +F +W + ++ T+A +A VY + P++ +A+S
Sbjct: 376 GITVTPGGYVFLNQWGSARYNTAAQLIALVYDKHHGDT------------PSKYANWARS 423
Query: 231 QVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSD 290
Q+DY+LG NP Y+VGY +N + HHRA+S + + S
Sbjct: 424 QMDYLLGKNPLNRCYVVGYSSNSVKYPHHRAASGLK------------------DANDSS 465
Query: 291 PN--LLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARL 335
P+ +L GA+VGGPDA D DR ++Y E A NA +G A L
Sbjct: 466 PHKYVLYGALVGGPDASDQHVDRTNDYIYNEVAIDYNAAFVGACAGL 512
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1GA2|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1G87|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1G87|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1KFG|A Chain A, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
pdb|1KFG|B Chain B, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
Length = 614
Score = 131 bits (329), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 111/350 (31%), Positives = 161/350 (46%), Gaps = 50/350 (14%)
Query: 1 MTTDRRAYKIDPSNPGSDLAGETXXXXXXXSIVFRHSDPAYSSELLRHAYQLFDFADKYR 60
M +R ++K+D S PGS + T ++VF+ SDP Y+ + + HA LFD ADK
Sbjct: 134 MQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAKNLFDMADK-- 191
Query: 61 GKYDGSITVAQKYYRSISGYNDELLWAAAWLYQASGNQHYLD----YLGKNGDS----MG 112
K D T A Y S S + D+L WAA WLY A+ + YLD Y+ G +
Sbjct: 192 AKSDAGYTAASG-YYSSSSFYDDLSWAAVWLYLATNDSTYLDKAESYVPNWGKEQQTDII 250
Query: 113 GTGWGMTEFGWDVKYPGVQTLVAKFLMQGKAGHYAPVFERYQQKAEYFM-CSCLGKGSRN 171
WG WD + G + L+AK + + Y+ E + G
Sbjct: 251 AYKWGQC---WDDVHYGAELLLAKLTNK----------QLYKDSIEMNLDFWTTGVNGTR 297
Query: 172 VQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQ 231
V TP GL + +W +++ T+ +FLA VY+++ C+ V+ + F KSQ
Sbjct: 298 VSYTPKGLAWLFQWGSLRHATTQAFLAGVYAEWEG-------CTPSKVSVYK--DFLKSQ 348
Query: 232 VDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDP 291
+DY LG R S++VGYG N PQ HHR + G + +S
Sbjct: 349 IDYALGSTGR--SFVVGYGVNPPQHPHHR--------------TAHGSWTDQMTSPTYHR 392
Query: 292 NLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLNAGHGG 341
+ + GA+VGGPD D + D +NY E A NA G LA++ GG
Sbjct: 393 HTIYGALVGGPDNADGYTDEINNYVNNEIACDYNAGFTGALAKMYKHSGG 442
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
pdb|1K72|B Chain B, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
Length = 614
Score = 131 bits (329), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 111/350 (31%), Positives = 161/350 (46%), Gaps = 50/350 (14%)
Query: 1 MTTDRRAYKIDPSNPGSDLAGETXXXXXXXSIVFRHSDPAYSSELLRHAYQLFDFADKYR 60
M +R ++K+D S PGS + T ++VF+ SDP Y+ + + HA LFD ADK
Sbjct: 134 MQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAKNLFDMADK-- 191
Query: 61 GKYDGSITVAQKYYRSISGYNDELLWAAAWLYQASGNQHYLD----YLGKNGDS----MG 112
K D T A Y S S + D+L WAA WLY A+ + YLD Y+ G +
Sbjct: 192 AKSDAGYTAASG-YYSSSSFYDDLSWAAVWLYLATNDSTYLDKAESYVPNWGKEQQTDII 250
Query: 113 GTGWGMTEFGWDVKYPGVQTLVAKFLMQGKAGHYAPVFERYQQKAEYFM-CSCLGKGSRN 171
WG WD + G + L+AK + + Y+ E + G
Sbjct: 251 AYKWGQX---WDDVHYGAELLLAKLTNK----------QLYKDSIEMNLDFWTTGVNGTR 297
Query: 172 VQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQ 231
V TP GL + +W +++ T+ +FLA VY+++ C+ V+ + F KSQ
Sbjct: 298 VSYTPKGLAWLFQWGSLRHATTQAFLAGVYAEWEG-------CTPSKVSVYK--DFLKSQ 348
Query: 232 VDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDP 291
+DY LG R S++VGYG N PQ HHR + G + +S
Sbjct: 349 IDYALGSTGR--SFVVGYGVNPPQHPHHR--------------TAHGSWTDQMTSPTYHR 392
Query: 292 NLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLNAGHGG 341
+ + GA+VGGPD D + D +NY E A NA G LA++ GG
Sbjct: 393 HTIYGALVGGPDNADGYTDEINNYVNNEIACDYNAGFTGALAKMYKHSGG 442
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticum
pdb|1IA7|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticium In Complex With Cellobiose
Length = 441
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 103/335 (30%), Positives = 155/335 (46%), Gaps = 62/335 (18%)
Query: 8 YKIDPSNPGSDLAGETXXXXXXXSIVFRHSDPAYSSELLRHAYQLFDFADKYRGKYDGSI 67
YK DPS+P SD+ ET + +++ D AY+++ L A +L+ GK + +
Sbjct: 143 YKADPSSPASDILSETSAALTLMYLNYKNIDSAYATKCLNAAKELYAM-----GKANQGV 197
Query: 68 TVAQKYYRSISGYNDELLWAAAWLYQASGNQHYL---DYLGKNGDSMGGTG----WGMTE 120
Q +Y++ S + D+L WAA WLY A+ + Y+ + G++M W M
Sbjct: 198 GNGQSFYQATS-FGDDLAWAATWLYTATNDSTYITDAEQFITLGNTMNENKMQDKWTMC- 255
Query: 121 FGWDVKYPGVQTLVAKFLMQGKAGHYAPVFERYQQKAEYFMCSCLGKGSRNVQKTPGGLI 180
WD Y +A+ + GK + Y+ E+ V TPGGL
Sbjct: 256 --WDDMYVPAALRLAQ--ITGK--------QIYKDAIEF----NFNYWKTQVTTTPGGLK 299
Query: 181 FRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQVDYILGDNP 240
+ W +++ + S + VY C LL AK QVDYILGDNP
Sbjct: 300 WLSNWGVLRYAAAESMVMLVY------------CKQN--PDQSLLDLAKKQVDYILGDNP 345
Query: 241 RATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDP--NLLVGAV 298
SY++GYG+N+ HHRA++ GY T+ + + P +LL GA+
Sbjct: 346 ANMSYIIGYGSNWCIHPHHRAAN---------------GY-TYANGDNAKPAKHLLTGAL 389
Query: 299 VGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILA 333
VGGPD D F D + Y+ TE A NA ++G+LA
Sbjct: 390 VGGPDQNDKFLDDANQYQYTEVALDYNAGLVGVLA 424
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The
Thermoacidophilic Alicyclobacillus Acidocaldarius
pdb|3GZK|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela
pdb|3H2W|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellobiose
pdb|3H3K|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellotetraose
pdb|3RX5|A Chain A, Structure Of Aacel9a In Complex With Cellotriose-Like
Isofagomine
pdb|3RX7|A Chain A, Structure Of Aacel9a In Complex With Cellotetraose-Like
Isofagomine
pdb|3RX8|A Chain A, Structure Of Aacel9a In Complex With Cellobiose-Like
Isofagomine
Length = 537
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 123/314 (39%), Gaps = 37/314 (11%)
Query: 31 SIVFRHSDPAYSS---ELLRHAYQLFDFADKYRGKYDGSITVAQKYYRSISGYNDELLWA 87
++V+R DPA SS + R AY A + + ++ + +Y + DELLWA
Sbjct: 256 ALVYRPFDPALSSCCADAARRAYAWLG-AHEMQPFHNPDGILTGEY--GDAELRDELLWA 312
Query: 88 AAWLYQASGNQHYLDYLGKNGDSMGGTGWGMTEFGW-DVKYPGVQTLVAKFLMQGKAGHY 146
+ L + +G+ + D W E GW DV GV +L +A
Sbjct: 313 SCALLRMTGDSAWARVCEPLLDL--DLPW---ELGWADVALYGVM----DYLRTPRAA-- 361
Query: 147 APVFERYQQKAEYFMCSCLGKGSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLA 206
V + + K + + L + + P G+ R ++ + ++ L + LA
Sbjct: 362 --VSDDVRNKVKSRLLRELDALAAMAESHPFGIPMRD--DDFIWGSNMVLLNRAMAFLLA 417
Query: 207 SAGRDLKCSAGNVAPAELLGFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVS 266
L +A VA + DY+ G NP Y+ G+G + HHR S
Sbjct: 418 EGVGVLHPAAHTVA--------QRAADYLFGANPLGQCYVTGFGQRPVRHPHHRPSVADD 469
Query: 267 IKVNPSFVSCRGGYATWFSSKGSDPNLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNA 326
+ +P GG + + A + G A + + D +D+Y E A Y N+
Sbjct: 470 VD-HPVPGMVVGGPNRHLQDE------IARAQLAGRPAMEAYIDHQDSYSTNEVAVYWNS 522
Query: 327 PILGILARLNAGHG 340
P + ++A L G
Sbjct: 523 PAVFVIAALLEARG 536
>pdb|1UT9|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 609
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 96/278 (34%), Gaps = 50/278 (17%)
Query: 82 DELLWAAAWLYQASGNQ----------HYLDYLGKNGDSMGGTG-----WGMTEFGWDVK 126
DE WAA LY +G HYL+ K G++ G G WG F W
Sbjct: 355 DEFYWAACELYVTTGKDEYKNYLMNSPHYLEMPAKMGENGGANGEDNGLWGC--FTWGTT 412
Query: 127 YPGVQTLVAKFLMQGKAGHYAPVFERYQQKAEYFMCSCLGKGSRNVQKTPGGLIFRQ--- 183
G+ T+ + G P + QKA + + N+++ L +Q
Sbjct: 413 Q-GLGTITLALVENG-----LPATDI--QKARNNIAKAADRWLENIEEQGYRLPIKQAED 464
Query: 184 -----RWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQVDYILGD 238
W + F+ + + D+ + + L + Y+LG
Sbjct: 465 ERGGYPWGSNSFILNQMIVMGYAYDFTGDS--------------KYLDGMFDGISYLLGR 510
Query: 239 NPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAV 298
N SY+ GYG Q H R + + K P+ G + +S+ DP +
Sbjct: 511 NAMDQSYVTGYGERPLQNPHDRFWTPQTSKRFPA--PPPGIISGGPNSRFEDPTINAAVK 568
Query: 299 VGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLN 336
P F D D++ E NAP + A L+
Sbjct: 569 KDTP-PQKCFIDHTDSWSTNEITVNWNAPFAWVTAYLD 605
>pdb|1RQ5|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 610
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 96/278 (34%), Gaps = 50/278 (17%)
Query: 82 DELLWAAAWLYQASGNQ----------HYLDYLGKNGDSMGGTG-----WGMTEFGWDVK 126
DE WAA LY +G HYL+ K G++ G G WG F W
Sbjct: 355 DEFYWAACELYVTTGKDEYKNYLMNSPHYLEMPAKMGENGGANGEDNGLWGC--FTWGTT 412
Query: 127 YPGVQTLVAKFLMQGKAGHYAPVFERYQQKAEYFMCSCLGKGSRNVQKTPGGLIFRQ--- 183
G+ T+ + G P + QKA + + N+++ L +Q
Sbjct: 413 Q-GLGTITLALVENG-----LPATDI--QKARNNIAKAADRWLENIEEQGYRLPIKQAED 464
Query: 184 -----RWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQVDYILGD 238
W + F+ + + D+ ++ L + Y+LG
Sbjct: 465 ERGGYPWGSNSFILNQMIVMGYAYDFTGD--------------SKYLDGMFDGISYLLGR 510
Query: 239 NPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAV 298
N SY+ GYG Q H R + + K P+ G + +S+ DP +
Sbjct: 511 NAMDQSYVTGYGERPLQNPHDRFWTPQTSKRFPA--PPPGIISGGPNSRFEDPTINAAVK 568
Query: 299 VGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLN 336
P F D D++ + NAP + A L+
Sbjct: 569 KDTP-PQKCFIDHTDSWGTNQITVNWNAPFAWVTAYLD 605
>pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Rad23
pdb|3M63|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Dsk2
Length = 968
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 55 FADKYRGKYDGSITVAQKYYRSISGYNDELLWAA 88
F DK+ +Y SI + + YY+ I Y ++L+W +
Sbjct: 641 FYDKFNSRYSISIILEELYYK-IPSYKNQLIWQS 673
>pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 55 FADKYRGKYDGSITVAQKYYRSISGYNDELLWAA 88
F DK+ +Y SI + + YY+ I Y ++L+W +
Sbjct: 655 FYDKFNSRYSISIILEELYYK-IPSYKNQLIWQS 687
>pdb|1CLC|A Chain A, Three-Dimensional Structure Of Endoglucanase D At 1.9
Angstroms Resolution
Length = 639
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 33 VFRHSDPAYSSELLRHAYQLFDF-ADKYRGKYDGSITVAQKYYRSISGYNDELLWAAAWL 91
+FR DP Y+ + + A ++F + + + Y ++S +D L WAAA +
Sbjct: 302 IFRPYDPQYAEKCINAAKVSYEFLKNNPANVFANQSGFSTGEYATVSDADDRL-WAAAEM 360
Query: 92 YQASGNQHYL 101
++ G++ YL
Sbjct: 361 WETLGDEEYL 370
>pdb|2QJ0|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 55 FADKYRGKYDGSITVAQKYYRSISGYNDELLWAA 88
F DK+ +Y SI + + YY+ I Y ++L+W +
Sbjct: 655 FYDKFNSRYSISIILEELYYK-IPSYKNQLIWQS 687
>pdb|1F1S|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase At 2.1 Angstrom Resolution.
pdb|1I8Q|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Enzyme Product, Unsaturated
Disaccharide Hyaluronan
pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Hexasaccharide Unit Of Hyaluronan
Length = 814
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 8/80 (10%)
Query: 87 AAAWLYQASGNQHYLDYLGKNGDSMGGTGWGMTEFGWDVKYPGVQTLVAKFLMQGKAGHY 146
+ AWL+Q ++ N D G W E G G +L+ + + Y
Sbjct: 180 SLAWLHQ--------NFYNVNKDIEGSANWWDFEIGVPRSITGTLSLMNNYFTDAEIKTY 231
Query: 147 APVFERYQQKAEYFMCSCLG 166
E + AEYF + +
Sbjct: 232 TDPIEHFVPDAEYFRKTLVN 251
>pdb|1M1C|A Chain A, Structure Of The L-A Virus
pdb|1M1C|B Chain B, Structure Of The L-A Virus
Length = 680
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 39 PAYSSELLRHAYQLFDFADKYRGKYDGSITVAQKYYRSISGYNDELLWAAAWLYQASG-N 97
P S + FD A+ Y G + I A KY R + Y+ W AW + +G +
Sbjct: 465 PVACSPYMIFPVAAFDTANPYCGNF--VIKAANKYLRKGAVYDKLEAWKLAWALRVAGYD 522
Query: 98 QHYLDYLGKNGDSMGGT 114
H+ Y GD+ G T
Sbjct: 523 THFKVY----GDTHGLT 535
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,552,329
Number of Sequences: 62578
Number of extensions: 617967
Number of successful extensions: 1258
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1204
Number of HSP's gapped (non-prelim): 26
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)