Query 011713
Match_columns 479
No_of_seqs 386 out of 2769
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 04:25:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 2E-109 4E-114 854.6 51.2 468 1-472 236-708 (716)
2 COG2274 SunT ABC-type bacterio 100.0 1E-101 3E-106 825.9 54.1 464 1-468 242-708 (709)
3 KOG0054 Multidrug resistance-a 100.0 2.3E-99 5E-104 837.7 53.0 470 1-470 906-1377(1381)
4 KOG0055 Multidrug/pheromone ex 100.0 3.6E-99 8E-104 818.2 53.2 466 1-469 755-1226(1228)
5 TIGR00957 MRP_assoc_pro multi 100.0 2.7E-95 6E-100 845.7 61.1 467 1-467 1053-1519(1522)
6 COG1132 MdlB ABC-type multidru 100.0 3.6E-95 8E-100 778.6 57.1 463 2-470 101-566 (567)
7 PRK11174 cysteine/glutathione 100.0 1.3E-94 2.8E-99 778.3 58.2 464 2-470 112-586 (588)
8 PLN03130 ABC transporter C fam 100.0 2.2E-94 4.7E-99 837.2 62.0 469 1-469 1001-1475(1622)
9 PLN03232 ABC transporter C fam 100.0 6.3E-93 1.4E-97 824.8 61.4 469 1-469 998-1472(1495)
10 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 5E-92 1.1E-96 769.7 59.3 459 2-468 225-685 (686)
11 KOG0055 Multidrug/pheromone ex 100.0 4.1E-94 9E-99 778.8 41.8 470 1-472 119-592 (1228)
12 PTZ00243 ABC transporter; Prov 100.0 1.1E-91 2.4E-96 813.5 62.4 470 1-470 1046-1548(1560)
13 KOG0056 Heavy metal exporter H 100.0 1.5E-93 3.3E-98 698.7 33.3 460 2-470 308-776 (790)
14 TIGR00958 3a01208 Conjugate Tr 100.0 7.3E-91 1.6E-95 760.8 56.1 458 2-465 250-711 (711)
15 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 8.8E-91 1.9E-95 763.1 56.9 461 2-465 243-709 (710)
16 TIGR01193 bacteriocin_ABC ABC- 100.0 9.1E-91 2E-95 762.3 56.4 459 2-466 245-707 (708)
17 COG4988 CydD ABC-type transpor 100.0 3E-90 6.6E-95 699.8 54.9 461 3-470 90-557 (559)
18 PRK11160 cysteine/glutathione 100.0 3.5E-90 7.5E-95 739.5 58.6 461 2-467 109-573 (574)
19 PRK11176 lipid transporter ATP 100.0 3.4E-90 7.3E-95 743.3 58.6 463 2-469 114-580 (582)
20 PTZ00265 multidrug resistance 100.0 1.7E-90 3.7E-95 797.9 57.3 467 2-468 915-1465(1466)
21 PRK10790 putative multidrug tr 100.0 1.9E-89 4.1E-94 738.4 59.5 464 2-472 114-579 (592)
22 TIGR01271 CFTR_protein cystic 100.0 6.6E-90 1.4E-94 798.3 59.8 469 1-471 973-1455(1490)
23 COG4987 CydC ABC-type transpor 100.0 8E-90 1.7E-94 685.7 49.7 457 5-466 110-571 (573)
24 TIGR03375 type_I_sec_LssB type 100.0 6.2E-89 1.3E-93 746.3 58.3 449 5-457 238-689 (694)
25 TIGR01846 type_I_sec_HlyB type 100.0 1.1E-87 2.3E-92 736.1 58.6 462 2-468 228-692 (694)
26 TIGR02203 MsbA_lipidA lipid A 100.0 1.8E-87 3.8E-92 721.1 57.8 462 2-468 103-568 (571)
27 KOG0057 Mitochondrial Fe/S clu 100.0 4.9E-88 1.1E-92 673.2 47.5 454 2-469 123-587 (591)
28 COG5265 ATM1 ABC-type transpor 100.0 3.7E-89 8E-94 660.9 37.0 461 2-466 31-496 (497)
29 PRK13657 cyclic beta-1,2-gluca 100.0 2.2E-86 4.8E-91 713.6 59.3 463 2-468 105-570 (588)
30 PRK10789 putative multidrug tr 100.0 5.9E-86 1.3E-90 706.6 57.7 464 2-470 85-552 (569)
31 TIGR02868 CydC thiol reductant 100.0 1.7E-85 3.7E-90 699.0 53.9 424 2-428 102-529 (529)
32 TIGR01192 chvA glucan exporter 100.0 8.2E-85 1.8E-89 699.0 58.8 463 2-468 105-570 (585)
33 TIGR02204 MsbA_rel ABC transpo 100.0 6.3E-85 1.4E-89 701.8 58.0 465 2-468 107-575 (576)
34 TIGR02857 CydD thiol reductant 100.0 5.6E-83 1.2E-87 679.6 55.2 434 2-440 93-529 (529)
35 TIGR01842 type_I_sec_PrtD type 100.0 5.8E-81 1.2E-85 665.4 57.1 443 8-457 96-543 (544)
36 PTZ00265 multidrug resistance 100.0 1.4E-80 3.1E-85 715.6 55.9 464 2-469 146-729 (1466)
37 TIGR01194 cyc_pep_trnsptr cycl 100.0 2.6E-77 5.7E-82 637.6 52.6 438 2-448 102-551 (555)
38 PLN03232 ABC transporter C fam 100.0 5.8E-77 1.3E-81 691.4 55.7 447 2-469 390-841 (1495)
39 PLN03130 ABC transporter C fam 100.0 2.6E-76 5.6E-81 686.2 56.4 448 2-468 390-840 (1622)
40 COG4618 ArpD ABC-type protease 100.0 2.1E-75 4.5E-80 577.3 39.9 433 18-457 124-561 (580)
41 PRK10522 multidrug transporter 100.0 1.3E-72 2.8E-77 601.3 52.3 437 2-458 97-541 (547)
42 KOG0054 Multidrug resistance-a 100.0 1.9E-70 4.1E-75 607.7 52.6 444 6-467 295-742 (1381)
43 TIGR00957 MRP_assoc_pro multi 100.0 9.5E-69 2.1E-73 623.6 57.7 450 2-468 407-862 (1522)
44 TIGR00954 3a01203 Peroxysomal 100.0 5.8E-66 1.2E-70 558.2 49.4 424 2-442 188-653 (659)
45 TIGR01271 CFTR_protein cystic 100.0 4.4E-65 9.5E-70 591.3 56.3 441 3-466 172-646 (1490)
46 PTZ00243 ABC transporter; Prov 100.0 1.1E-62 2.4E-67 571.6 54.3 446 7-467 341-880 (1560)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.5E-61 3.3E-66 469.5 27.6 237 231-468 1-237 (275)
48 COG1126 GlnQ ABC-type polar am 100.0 8.4E-57 1.8E-61 402.5 22.0 214 232-458 2-227 (240)
49 PRK14257 phosphate ABC transpo 100.0 2.9E-56 6.3E-61 443.4 26.1 226 226-458 74-315 (329)
50 cd03288 ABCC_SUR2 The SUR doma 100.0 2.4E-54 5.2E-59 417.8 28.6 239 229-467 16-255 (257)
51 cd03252 ABCC_Hemolysin The ABC 100.0 1.8E-54 3.8E-59 414.1 27.0 234 233-466 1-235 (237)
52 COG1135 AbcC ABC-type metal io 100.0 1.8E-54 4E-59 406.6 20.6 223 233-466 2-243 (339)
53 COG1117 PstB ABC-type phosphat 100.0 1.6E-54 3.5E-59 386.0 17.7 218 232-458 7-239 (253)
54 COG1125 OpuBA ABC-type proline 100.0 2.2E-54 4.8E-59 394.5 17.9 213 233-458 2-227 (309)
55 cd03244 ABCC_MRP_domain2 Domai 100.0 4E-53 8.6E-58 400.5 26.6 219 232-450 2-220 (221)
56 cd03251 ABCC_MsbA MsbA is an e 100.0 1E-52 2.2E-57 401.2 26.5 232 233-464 1-233 (234)
57 cd03253 ABCC_ATM1_transporter 100.0 1.4E-52 3E-57 400.8 27.0 234 233-467 1-235 (236)
58 cd03254 ABCC_Glucan_exporter_l 100.0 2.3E-52 4.9E-57 397.5 26.0 226 232-458 2-228 (229)
59 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.2E-51 2.7E-56 394.7 26.3 233 233-465 1-235 (238)
60 cd03245 ABCC_bacteriocin_expor 100.0 4E-51 8.7E-56 386.6 26.0 218 232-449 2-220 (220)
61 TIGR02314 ABC_MetN D-methionin 100.0 1.5E-51 3.3E-56 410.4 23.7 223 233-466 2-242 (343)
62 PRK13631 cbiO cobalt transport 100.0 5.2E-51 1.1E-55 404.6 25.1 220 231-457 20-266 (320)
63 COG1136 SalX ABC-type antimicr 100.0 9.6E-51 2.1E-55 374.5 23.7 204 233-447 2-222 (226)
64 cd03261 ABC_Org_Solvent_Resist 100.0 4.5E-51 9.7E-56 390.1 22.2 217 233-462 1-232 (235)
65 COG1120 FepC ABC-type cobalami 100.0 4.4E-51 9.4E-56 384.1 21.6 214 232-458 2-230 (258)
66 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.8E-50 3.8E-55 378.5 25.5 207 227-451 1-207 (207)
67 COG1122 CbiO ABC-type cobalt t 100.0 4.9E-51 1.1E-55 383.7 21.7 215 232-458 3-230 (235)
68 COG3839 MalK ABC-type sugar tr 100.0 7.7E-51 1.7E-55 396.6 22.2 211 232-457 3-224 (338)
69 COG3840 ThiQ ABC-type thiamine 100.0 7.3E-51 1.6E-55 353.5 19.5 210 233-459 2-222 (231)
70 COG1127 Ttg2A ABC-type transpo 100.0 1.5E-50 3.2E-55 367.8 22.0 221 232-465 8-245 (263)
71 PRK13650 cbiO cobalt transport 100.0 3.1E-50 6.8E-55 393.2 24.1 216 232-458 4-231 (279)
72 COG1124 DppF ABC-type dipeptid 100.0 2E-50 4.3E-55 368.8 20.9 222 232-464 3-240 (252)
73 cd03260 ABC_PstB_phosphate_tra 100.0 2.5E-50 5.3E-55 383.0 22.1 211 233-454 1-227 (227)
74 cd03248 ABCC_TAP TAP, the Tran 100.0 9E-50 1.9E-54 378.9 23.6 216 230-445 9-226 (226)
75 PRK11153 metN DL-methionine tr 100.0 7.5E-50 1.6E-54 400.6 23.4 214 233-457 2-231 (343)
76 PRK14269 phosphate ABC transpo 100.0 1E-49 2.3E-54 383.1 23.4 217 232-457 2-231 (246)
77 cd03291 ABCC_CFTR1 The CFTR su 100.0 7.3E-49 1.6E-53 382.2 29.3 219 230-465 37-256 (282)
78 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 9.9E-50 2.1E-54 372.9 22.0 210 232-458 4-229 (254)
79 PRK13635 cbiO cobalt transport 100.0 1.3E-49 2.8E-54 388.7 23.8 216 232-458 5-231 (279)
80 cd03263 ABC_subfamily_A The AB 100.0 1E-49 2.2E-54 376.9 22.0 210 233-454 1-219 (220)
81 PRK13647 cbiO cobalt transport 100.0 1.3E-49 2.8E-54 387.8 23.2 212 232-455 4-226 (274)
82 TIGR00960 3a0501s02 Type II (G 100.0 6.3E-50 1.4E-54 377.3 20.2 202 233-445 2-216 (216)
83 cd03250 ABCC_MRP_domain1 Domai 100.0 2.3E-49 5.1E-54 370.0 23.7 199 233-444 1-204 (204)
84 COG1116 TauB ABC-type nitrate/ 100.0 7.4E-50 1.6E-54 368.6 19.8 197 232-446 3-212 (248)
85 PRK14250 phosphate ABC transpo 100.0 4.2E-49 9.2E-54 377.6 25.9 221 232-465 3-231 (241)
86 PRK11650 ugpC glycerol-3-phosp 100.0 2.2E-49 4.7E-54 397.9 24.6 213 232-458 3-226 (356)
87 cd03256 ABC_PhnC_transporter A 100.0 2.1E-49 4.5E-54 380.1 22.7 211 233-455 1-233 (241)
88 COG2884 FtsE Predicted ATPase 100.0 6.3E-50 1.4E-54 350.4 16.9 207 233-451 2-221 (223)
89 PRK13643 cbiO cobalt transport 100.0 2.7E-49 5.9E-54 388.1 23.5 214 233-457 2-234 (288)
90 cd03219 ABC_Mj1267_LivG_branch 100.0 2.1E-49 4.6E-54 378.8 22.0 216 233-457 1-233 (236)
91 PRK13637 cbiO cobalt transport 100.0 2.4E-49 5.2E-54 388.3 22.8 216 233-457 3-235 (287)
92 cd03296 ABC_CysA_sulfate_impor 100.0 4.3E-49 9.2E-54 377.3 23.6 210 233-457 3-227 (239)
93 TIGR02315 ABC_phnC phosphonate 100.0 3.2E-49 6.9E-54 379.3 22.7 211 233-455 2-234 (243)
94 COG3842 PotA ABC-type spermidi 100.0 1.6E-49 3.4E-54 389.4 19.9 212 232-458 5-228 (352)
95 cd03258 ABC_MetN_methionine_tr 100.0 4.4E-49 9.5E-54 375.9 22.4 213 233-456 2-230 (233)
96 PRK11432 fbpC ferric transport 100.0 4.9E-49 1.1E-53 394.3 23.7 211 232-457 6-227 (351)
97 PRK13646 cbiO cobalt transport 100.0 4.3E-49 9.4E-54 386.5 22.8 219 233-458 3-237 (286)
98 PRK13636 cbiO cobalt transport 100.0 6.4E-49 1.4E-53 384.7 23.6 215 232-458 5-233 (283)
99 PRK14273 phosphate ABC transpo 100.0 9.9E-49 2.1E-53 378.2 24.4 217 232-457 7-239 (254)
100 TIGR00972 3a0107s01c2 phosphat 100.0 9.4E-49 2E-53 376.8 24.1 216 233-457 2-233 (247)
101 PRK11629 lolD lipoprotein tran 100.0 7E-49 1.5E-53 374.4 22.9 208 232-450 5-228 (233)
102 cd03259 ABC_Carb_Solutes_like 100.0 3.7E-49 8E-54 371.2 20.6 202 233-449 1-213 (213)
103 PRK13642 cbiO cobalt transport 100.0 1E-48 2.3E-53 382.2 24.3 217 232-459 4-232 (277)
104 PRK14242 phosphate transporter 100.0 8.4E-49 1.8E-53 378.5 23.4 217 232-457 6-238 (253)
105 PRK10744 pstB phosphate transp 100.0 1.2E-48 2.7E-53 378.6 24.5 218 231-457 12-245 (260)
106 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.5E-49 7.6E-54 372.8 19.9 202 233-445 1-218 (218)
107 PRK13632 cbiO cobalt transport 100.0 9.9E-49 2.1E-53 381.4 23.6 216 232-458 7-233 (271)
108 cd03295 ABC_OpuCA_Osmoprotecti 100.0 5.9E-49 1.3E-53 377.1 21.2 215 233-457 1-226 (242)
109 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.4E-48 3.1E-53 373.0 23.6 212 233-458 2-223 (236)
110 COG3638 ABC-type phosphate/pho 100.0 5.3E-49 1.1E-53 356.8 19.3 212 232-455 3-236 (258)
111 PRK13652 cbiO cobalt transport 100.0 1.6E-48 3.4E-53 381.0 24.2 215 233-459 4-230 (277)
112 PRK13634 cbiO cobalt transport 100.0 1.1E-48 2.4E-53 384.2 23.0 216 233-458 3-237 (290)
113 PRK13648 cbiO cobalt transport 100.0 1.3E-48 2.8E-53 380.3 23.2 216 232-458 7-233 (269)
114 TIGR01186 proV glycine betaine 100.0 5.2E-49 1.1E-53 394.2 20.6 200 247-457 6-220 (363)
115 cd03264 ABC_drug_resistance_li 100.0 1.1E-48 2.3E-53 367.6 21.3 202 233-449 1-211 (211)
116 PRK13640 cbiO cobalt transport 100.0 1.8E-48 3.8E-53 381.4 23.7 215 232-457 5-233 (282)
117 cd03226 ABC_cobalt_CbiO_domain 100.0 1E-48 2.2E-53 366.0 21.0 198 234-446 1-205 (205)
118 PRK14267 phosphate ABC transpo 100.0 1.7E-48 3.7E-53 376.4 23.1 217 232-457 4-238 (253)
119 PRK13651 cobalt transporter AT 100.0 1.9E-48 4E-53 384.1 23.4 214 233-457 3-255 (305)
120 cd03266 ABC_NatA_sodium_export 100.0 1.1E-48 2.3E-53 369.4 20.8 205 233-449 2-218 (218)
121 PRK14235 phosphate transporter 100.0 2.6E-48 5.7E-53 377.6 24.1 219 230-457 17-252 (267)
122 cd03224 ABC_TM1139_LivF_branch 100.0 1.4E-48 3.1E-53 369.6 21.7 212 233-456 1-221 (222)
123 TIGR03265 PhnT2 putative 2-ami 100.0 1.4E-48 2.9E-53 391.7 22.6 212 232-458 4-226 (353)
124 cd03247 ABCC_cytochrome_bd The 100.0 1.8E-48 3.9E-53 356.1 21.3 178 233-449 1-178 (178)
125 PRK13633 cobalt transporter AT 100.0 2.3E-48 5E-53 380.4 23.5 216 232-458 4-235 (280)
126 PRK13644 cbiO cobalt transport 100.0 3.3E-48 7.2E-53 377.9 24.4 213 233-457 2-225 (274)
127 PRK10575 iron-hydroxamate tran 100.0 2.7E-48 5.9E-53 377.2 23.7 213 232-457 11-238 (265)
128 cd03290 ABCC_SUR1_N The SUR do 100.0 3.3E-48 7.1E-53 366.1 23.6 210 234-444 2-218 (218)
129 PRK09536 btuD corrinoid ABC tr 100.0 2.1E-48 4.6E-53 394.4 23.8 220 232-465 3-236 (402)
130 PRK10851 sulfate/thiosulfate t 100.0 2.6E-48 5.6E-53 389.7 24.2 211 232-457 2-227 (353)
131 TIGR03005 ectoine_ehuA ectoine 100.0 3.4E-48 7.3E-53 374.0 23.9 212 233-457 1-237 (252)
132 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.4E-48 2.9E-53 379.8 21.2 216 234-462 26-257 (269)
133 TIGR02211 LolD_lipo_ex lipopro 100.0 1.9E-48 4.1E-53 368.6 21.5 203 233-446 2-220 (221)
134 PRK14247 phosphate ABC transpo 100.0 4E-48 8.7E-53 373.1 24.0 217 232-457 3-235 (250)
135 cd03268 ABC_BcrA_bacitracin_re 100.0 2.3E-48 5.1E-53 364.4 21.6 202 233-449 1-208 (208)
136 PRK11231 fecE iron-dicitrate t 100.0 3.6E-48 7.8E-53 374.4 23.4 219 233-465 3-235 (255)
137 cd03225 ABC_cobalt_CbiO_domain 100.0 1.8E-48 4E-53 366.0 20.2 200 234-444 1-211 (211)
138 PRK15079 oligopeptide ABC tran 100.0 6E-48 1.3E-52 384.1 24.8 221 232-463 8-259 (331)
139 TIGR03411 urea_trans_UrtD urea 100.0 6E-48 1.3E-52 370.2 23.9 211 233-456 3-231 (242)
140 PRK11124 artP arginine transpo 100.0 5.8E-48 1.3E-52 370.2 23.8 212 233-457 3-231 (242)
141 cd03265 ABC_DrrA DrrA is the A 100.0 4.5E-48 9.8E-53 365.6 22.6 208 233-454 1-219 (220)
142 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.6E-48 5.6E-53 367.3 20.8 203 233-451 1-218 (220)
143 PRK14251 phosphate ABC transpo 100.0 4.3E-48 9.2E-53 373.2 22.4 217 232-457 4-236 (251)
144 TIGR03258 PhnT 2-aminoethylpho 100.0 3.3E-48 7.2E-53 389.5 22.5 213 230-457 3-229 (362)
145 TIGR02769 nickel_nikE nickel i 100.0 8.9E-48 1.9E-52 373.6 24.7 223 233-465 3-250 (265)
146 PRK09493 glnQ glutamine ABC tr 100.0 5.9E-48 1.3E-52 369.7 23.1 212 233-457 2-226 (240)
147 PRK14259 phosphate ABC transpo 100.0 1.1E-47 2.5E-52 373.3 25.4 218 231-457 12-254 (269)
148 PRK09452 potA putrescine/sperm 100.0 5.6E-48 1.2E-52 389.2 24.0 211 232-457 14-235 (375)
149 PRK11000 maltose/maltodextrin 100.0 4.3E-48 9.4E-53 391.0 23.1 211 232-457 3-224 (369)
150 PRK14245 phosphate ABC transpo 100.0 4.5E-48 9.8E-53 372.7 22.2 217 232-457 3-235 (250)
151 cd03292 ABC_FtsE_transporter F 100.0 3.5E-48 7.5E-53 364.9 20.8 201 233-445 1-214 (214)
152 PRK14274 phosphate ABC transpo 100.0 7.9E-48 1.7E-52 372.9 23.8 217 232-457 12-244 (259)
153 cd03301 ABC_MalK_N The N-termi 100.0 3.4E-48 7.4E-53 364.7 20.5 202 233-449 1-213 (213)
154 PRK14237 phosphate transporter 100.0 1E-47 2.2E-52 373.5 24.4 218 231-457 19-252 (267)
155 PRK11831 putative ABC transpor 100.0 8.5E-48 1.9E-52 374.4 23.8 222 232-466 7-244 (269)
156 cd03218 ABC_YhbG The ABC trans 100.0 5.2E-48 1.1E-52 368.3 21.7 215 233-456 1-222 (232)
157 PRK14240 phosphate transporter 100.0 8.1E-48 1.8E-52 371.0 23.2 218 231-457 2-235 (250)
158 PRK13649 cbiO cobalt transport 100.0 5.9E-48 1.3E-52 377.9 22.4 215 233-457 3-235 (280)
159 TIGR02673 FtsE cell division A 100.0 3.4E-48 7.4E-53 365.0 19.8 200 233-444 2-214 (214)
160 PRK10619 histidine/lysine/argi 100.0 1.2E-47 2.7E-52 371.1 24.2 215 231-457 4-242 (257)
161 PRK14239 phosphate transporter 100.0 7.6E-48 1.7E-52 371.7 22.4 217 232-457 5-237 (252)
162 PRK14244 phosphate ABC transpo 100.0 3.8E-48 8.2E-53 373.5 20.2 216 233-457 6-238 (251)
163 PRK11264 putative amino-acid A 100.0 1.1E-47 2.4E-52 370.1 23.4 212 233-457 4-234 (250)
164 PRK14249 phosphate ABC transpo 100.0 1.4E-47 3.1E-52 369.5 24.1 217 232-457 4-236 (251)
165 PRK13537 nodulation ABC transp 100.0 7E-48 1.5E-52 380.7 22.4 212 232-457 7-228 (306)
166 PRK13645 cbiO cobalt transport 100.0 9.3E-48 2E-52 378.0 23.1 217 231-457 5-241 (289)
167 PRK14256 phosphate ABC transpo 100.0 1.8E-47 3.9E-52 369.0 24.6 218 231-457 3-237 (252)
168 PRK14268 phosphate ABC transpo 100.0 8.1E-48 1.8E-52 372.5 22.2 217 232-457 12-243 (258)
169 cd03246 ABCC_Protease_Secretio 100.0 9.1E-48 2E-52 349.7 21.1 172 233-445 1-173 (173)
170 TIGR03410 urea_trans_UrtE urea 100.0 1.3E-47 2.7E-52 365.1 22.9 210 233-454 1-219 (230)
171 PRK13638 cbiO cobalt transport 100.0 1.1E-47 2.3E-52 374.2 23.0 213 233-458 2-227 (271)
172 PRK11308 dppF dipeptide transp 100.0 2.2E-47 4.7E-52 379.8 25.4 225 232-466 5-256 (327)
173 PRK14236 phosphate transporter 100.0 1.4E-47 3.1E-52 373.4 23.6 218 231-457 24-257 (272)
174 PRK11614 livF leucine/isoleuci 100.0 1.8E-47 3.8E-52 365.7 23.8 218 232-457 5-227 (237)
175 PRK13641 cbiO cobalt transport 100.0 1.1E-47 2.4E-52 376.8 22.7 215 232-457 2-235 (287)
176 PRK10584 putative ABC transpor 100.0 1.6E-47 3.5E-52 363.9 23.2 206 232-448 6-227 (228)
177 PRK13548 hmuV hemin importer A 100.0 3.2E-47 6.9E-52 368.1 25.1 212 233-457 3-231 (258)
178 cd03235 ABC_Metallic_Cations A 100.0 7.2E-48 1.6E-52 362.5 20.0 197 234-449 1-213 (213)
179 TIGR03873 F420-0_ABC_ATP propo 100.0 1.9E-47 4.1E-52 369.6 23.3 211 233-456 2-226 (256)
180 PRK10895 lipopolysaccharide AB 100.0 1.4E-47 3.1E-52 367.3 22.2 216 233-457 4-227 (241)
181 PRK10247 putative ABC transpor 100.0 1.3E-47 2.8E-52 363.5 21.6 209 232-452 7-223 (225)
182 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.8E-47 3.8E-52 359.3 22.3 200 233-449 1-211 (211)
183 PRK14248 phosphate ABC transpo 100.0 1.7E-47 3.6E-52 372.3 22.9 217 232-457 21-253 (268)
184 PRK14238 phosphate transporter 100.0 4.1E-47 8.9E-52 369.8 25.6 217 232-457 24-256 (271)
185 PRK13639 cbiO cobalt transport 100.0 1.6E-47 3.6E-52 373.4 22.7 213 233-457 2-227 (275)
186 PRK14262 phosphate ABC transpo 100.0 1.8E-47 3.9E-52 368.6 22.7 217 232-457 3-235 (250)
187 PRK15112 antimicrobial peptide 100.0 1.9E-47 4.1E-52 371.5 22.8 226 232-468 4-253 (267)
188 cd03257 ABC_NikE_OppD_transpor 100.0 2.8E-47 6.1E-52 362.3 23.5 207 233-449 2-228 (228)
189 PRK11247 ssuB aliphatic sulfon 100.0 2.8E-47 6.1E-52 367.2 23.7 204 232-453 12-220 (257)
190 PRK10908 cell division protein 100.0 2E-47 4.4E-52 361.7 22.2 203 233-447 2-217 (222)
191 PRK10253 iron-enterobactin tra 100.0 2.2E-47 4.8E-52 370.8 22.9 212 232-456 7-233 (265)
192 PRK14243 phosphate transporter 100.0 4E-47 8.6E-52 368.7 24.5 217 232-457 10-249 (264)
193 PRK11022 dppD dipeptide transp 100.0 3.9E-47 8.5E-52 378.1 24.8 223 233-463 4-251 (326)
194 PRK11607 potG putrescine trans 100.0 2.2E-47 4.8E-52 385.5 23.3 211 232-457 19-240 (377)
195 PRK14261 phosphate ABC transpo 100.0 3.6E-47 7.7E-52 367.1 23.8 217 232-457 6-238 (253)
196 PRK10771 thiQ thiamine transpo 100.0 7.1E-47 1.5E-51 360.3 25.5 209 233-458 2-221 (232)
197 PRK14270 phosphate ABC transpo 100.0 4.5E-47 9.8E-52 366.0 24.3 217 232-457 4-236 (251)
198 PRK14253 phosphate ABC transpo 100.0 3.4E-47 7.4E-52 366.5 23.3 216 232-456 3-233 (249)
199 PRK14254 phosphate ABC transpo 100.0 4.5E-47 9.7E-52 371.7 24.4 218 231-457 38-270 (285)
200 cd03300 ABC_PotA_N PotA is an 100.0 1.5E-47 3.3E-52 364.8 20.5 210 233-457 1-221 (232)
201 TIGR00968 3a0106s01 sulfate AB 100.0 3.5E-47 7.7E-52 363.4 23.0 210 233-457 1-221 (237)
202 PRK11300 livG leucine/isoleuci 100.0 4.3E-47 9.3E-52 367.1 23.8 219 232-457 5-244 (255)
203 PRK10070 glycine betaine trans 100.0 2.5E-47 5.5E-52 386.3 23.2 199 248-457 42-255 (400)
204 TIGR01288 nodI ATP-binding ABC 100.0 3.1E-47 6.7E-52 376.4 23.1 212 232-457 4-225 (303)
205 PRK14271 phosphate ABC transpo 100.0 5.9E-47 1.3E-51 369.3 24.6 217 232-457 21-252 (276)
206 PRK14260 phosphate ABC transpo 100.0 3.5E-47 7.5E-52 368.3 22.6 217 232-457 7-244 (259)
207 PRK14266 phosphate ABC transpo 100.0 5.3E-47 1.2E-51 365.3 23.7 217 232-457 3-235 (250)
208 cd03262 ABC_HisP_GlnQ_permease 100.0 2E-47 4.3E-52 359.5 20.2 200 233-445 1-213 (213)
209 TIGR03522 GldA_ABC_ATP gliding 100.0 3.8E-47 8.3E-52 375.2 22.6 211 233-457 3-222 (301)
210 cd03269 ABC_putative_ATPase Th 100.0 2.3E-47 5E-52 358.2 19.9 200 233-449 1-210 (210)
211 PRK09473 oppD oligopeptide tra 100.0 9E-47 2E-51 375.8 25.2 227 232-466 12-263 (330)
212 PRK14252 phosphate ABC transpo 100.0 1E-46 2.2E-51 366.2 24.2 219 229-456 13-249 (265)
213 PRK14241 phosphate transporter 100.0 6.2E-47 1.3E-51 366.4 22.5 217 232-457 4-243 (258)
214 PRK14272 phosphate ABC transpo 100.0 8.5E-47 1.8E-51 364.4 23.2 217 232-457 4-237 (252)
215 PRK14263 phosphate ABC transpo 100.0 1.3E-46 2.7E-51 364.3 24.3 217 232-457 8-246 (261)
216 TIGR01978 sufC FeS assembly AT 100.0 6.2E-47 1.3E-51 363.4 21.5 212 233-455 1-233 (243)
217 TIGR01277 thiQ thiamine ABC tr 100.0 8.9E-47 1.9E-51 354.9 22.0 201 233-450 1-212 (213)
218 PRK09984 phosphonate/organopho 100.0 1.4E-46 3E-51 364.8 23.9 222 232-468 4-252 (262)
219 PRK13536 nodulation factor exp 100.0 6E-47 1.3E-51 378.0 21.9 212 232-457 41-262 (340)
220 PRK14275 phosphate ABC transpo 100.0 1E-46 2.3E-51 369.5 23.1 217 232-457 39-271 (286)
221 PRK15093 antimicrobial peptide 100.0 1.1E-46 2.5E-51 375.9 23.7 220 233-463 4-256 (330)
222 COG4615 PvdE ABC-type sideroph 100.0 7E-45 1.5E-49 349.5 34.8 426 3-448 98-529 (546)
223 PRK14265 phosphate ABC transpo 100.0 2.3E-46 5E-51 365.0 25.0 217 232-457 20-259 (274)
224 TIGR03415 ABC_choXWV_ATP choli 100.0 8.2E-47 1.8E-51 380.0 22.4 204 248-462 38-261 (382)
225 PRK14264 phosphate ABC transpo 100.0 1.8E-46 3.9E-51 370.9 24.4 218 231-457 44-290 (305)
226 PRK14258 phosphate ABC transpo 100.0 1.5E-46 3.3E-51 364.1 22.9 217 232-457 7-246 (261)
227 PRK13547 hmuV hemin importer A 100.0 2.6E-46 5.6E-51 363.5 24.2 212 233-457 2-245 (272)
228 cd03299 ABC_ModC_like Archeal 100.0 1.9E-46 4.2E-51 357.9 22.5 209 233-457 1-220 (235)
229 PRK11701 phnK phosphonate C-P 100.0 4.9E-46 1.1E-50 360.1 25.6 224 232-463 6-249 (258)
230 COG4178 ABC-type uncharacteriz 100.0 1.2E-43 2.6E-48 366.2 44.6 410 14-442 152-588 (604)
231 PRK10418 nikD nickel transport 100.0 2.4E-46 5.3E-51 361.3 23.1 228 232-472 4-248 (254)
232 PRK14255 phosphate ABC transpo 100.0 1.9E-46 4.1E-51 361.9 22.0 217 232-457 5-237 (252)
233 PRK14246 phosphate ABC transpo 100.0 3.4E-46 7.5E-51 360.4 23.8 224 232-464 10-250 (257)
234 TIGR01188 drrA daunorubicin re 100.0 1.4E-46 3E-51 371.6 21.2 203 241-457 2-214 (302)
235 PRK11144 modC molybdate transp 100.0 2.6E-46 5.6E-51 376.3 23.3 210 233-458 2-220 (352)
236 PRK10419 nikE nickel transport 100.0 2.7E-46 5.8E-51 363.5 22.5 225 233-464 4-249 (268)
237 TIGR02982 heterocyst_DevA ABC 100.0 1.6E-46 3.5E-51 354.9 20.3 202 233-445 2-219 (220)
238 COG1131 CcmA ABC-type multidru 100.0 2.4E-46 5.2E-51 366.5 21.8 213 232-457 4-227 (293)
239 PRK11248 tauB taurine transpor 100.0 3.9E-46 8.5E-51 359.6 21.8 201 233-451 2-215 (255)
240 COG1118 CysA ABC-type sulfate/ 100.0 1.4E-46 3E-51 352.6 17.7 211 232-457 2-228 (345)
241 TIGR03740 galliderm_ABC gallid 100.0 1E-45 2.2E-50 350.3 23.7 204 233-453 1-210 (223)
242 cd03228 ABCC_MRP_Like The MRP 100.0 5.8E-46 1.3E-50 337.2 20.8 171 233-444 1-171 (171)
243 cd03234 ABCG_White The White s 100.0 3E-46 6.5E-51 354.6 19.5 212 233-449 4-226 (226)
244 cd03230 ABC_DR_subfamily_A Thi 100.0 7.6E-46 1.7E-50 337.1 20.3 170 233-445 1-173 (173)
245 cd03229 ABC_Class3 This class 100.0 1E-45 2.2E-50 337.9 20.8 172 233-444 1-178 (178)
246 TIGR02142 modC_ABC molybdenum 100.0 9.1E-46 2E-50 372.9 22.5 207 237-458 4-223 (354)
247 cd03233 ABC_PDR_domain1 The pl 100.0 1.1E-45 2.5E-50 344.2 20.9 189 233-449 4-202 (202)
248 PRK09544 znuC high-affinity zi 100.0 2.9E-45 6.2E-50 352.4 24.1 208 232-465 4-217 (251)
249 PRK15056 manganese/iron transp 100.0 2.8E-45 6.2E-50 357.2 23.5 209 232-456 6-230 (272)
250 cd03217 ABC_FeS_Assembly ABC-t 100.0 3.9E-45 8.4E-50 340.2 21.8 185 233-455 1-192 (200)
251 TIGR02323 CP_lyasePhnK phospho 100.0 6.2E-45 1.3E-49 351.6 23.5 217 232-457 3-239 (253)
252 cd03232 ABC_PDR_domain2 The pl 100.0 1.9E-45 4E-50 340.1 19.0 181 232-449 3-192 (192)
253 cd03213 ABCG_EPDR ABCG transpo 100.0 2.5E-45 5.5E-50 339.7 19.7 182 232-449 3-194 (194)
254 cd03214 ABC_Iron-Siderophores_ 100.0 2.8E-45 6.1E-50 335.5 19.7 177 234-449 1-180 (180)
255 cd03297 ABC_ModC_molybdenum_tr 100.0 3.3E-45 7.1E-50 344.6 20.4 199 234-449 3-214 (214)
256 cd03223 ABCD_peroxisomal_ALDP 100.0 5.2E-45 1.1E-49 329.1 20.4 164 233-444 1-164 (166)
257 CHL00131 ycf16 sulfate ABC tra 100.0 7.9E-45 1.7E-49 350.7 22.9 212 232-454 7-239 (252)
258 TIGR03608 L_ocin_972_ABC putat 100.0 2.8E-45 6E-50 343.1 18.7 193 235-440 1-206 (206)
259 COG0410 LivF ABC-type branched 100.0 1.1E-44 2.3E-49 329.0 21.6 220 233-459 4-229 (237)
260 cd03215 ABC_Carb_Monos_II This 100.0 3.9E-45 8.4E-50 335.2 18.9 172 232-445 4-182 (182)
261 COG1123 ATPase components of v 100.0 1E-44 2.2E-49 369.8 22.6 224 232-466 280-530 (539)
262 PRK09580 sufC cysteine desulfu 100.0 2.2E-44 4.7E-49 346.8 23.6 211 233-454 2-233 (248)
263 PRK03695 vitamin B12-transport 100.0 2.7E-44 5.8E-49 345.6 23.0 205 234-456 2-222 (248)
264 COG4619 ABC-type uncharacteriz 100.0 8.3E-45 1.8E-49 311.5 15.6 196 242-447 11-214 (223)
265 TIGR01184 ntrCD nitrate transp 100.0 3.4E-44 7.3E-49 341.2 21.3 190 250-455 1-203 (230)
266 COG4555 NatA ABC-type Na+ tran 100.0 6.4E-45 1.4E-49 321.5 15.0 213 233-458 2-224 (245)
267 COG0444 DppD ABC-type dipeptid 100.0 5.6E-44 1.2E-48 340.7 22.4 223 233-466 2-255 (316)
268 PRK10261 glutathione transport 100.0 4.9E-44 1.1E-48 385.6 24.8 224 232-466 313-565 (623)
269 PRK15439 autoinducer 2 ABC tra 100.0 4.5E-44 9.7E-49 378.3 23.8 212 232-456 11-229 (510)
270 cd03216 ABC_Carb_Monos_I This 100.0 7.2E-44 1.6E-48 320.6 21.4 159 233-447 1-162 (163)
271 cd03231 ABC_CcmA_heme_exporter 100.0 7.6E-44 1.6E-48 331.9 21.6 194 233-440 1-198 (201)
272 COG4175 ProV ABC-type proline/ 100.0 2.4E-44 5.2E-49 337.8 18.1 216 232-458 4-256 (386)
273 PRK13549 xylose transporter AT 100.0 4.9E-44 1.1E-48 378.1 22.5 211 232-455 5-231 (506)
274 TIGR02770 nickel_nikD nickel i 100.0 4.1E-44 9E-49 340.8 19.4 205 249-463 1-223 (230)
275 PRK09700 D-allose transporter 100.0 5.7E-44 1.2E-48 378.2 21.6 212 232-456 5-234 (510)
276 PRK13540 cytochrome c biogenes 100.0 9.2E-44 2E-48 331.1 20.4 193 233-439 2-198 (200)
277 cd03267 ABC_NatA_like Similar 100.0 6.4E-44 1.4E-48 340.6 19.8 191 247-449 34-236 (236)
278 PRK10762 D-ribose transporter 100.0 8.8E-44 1.9E-48 375.7 22.6 211 232-455 4-229 (501)
279 PRK13538 cytochrome c biogenes 100.0 1.3E-43 2.7E-48 331.2 20.9 194 233-440 2-202 (204)
280 PRK10938 putative molybdenum t 100.0 1.8E-43 3.9E-48 372.7 23.1 211 233-457 4-225 (490)
281 COG1137 YhbG ABC-type (unclass 100.0 1.6E-44 3.5E-49 318.6 11.6 223 232-458 4-230 (243)
282 COG1123 ATPase components of v 100.0 3.1E-43 6.8E-48 358.9 21.7 215 232-457 5-245 (539)
283 PRK15134 microcin C ABC transp 100.0 2.3E-43 5E-48 374.9 21.6 214 232-457 275-516 (529)
284 COG0411 LivG ABC-type branched 100.0 5.3E-44 1.2E-48 326.9 14.3 213 233-458 5-241 (250)
285 PRK11288 araG L-arabinose tran 100.0 3.3E-43 7.3E-48 371.3 22.4 207 232-451 4-224 (501)
286 PRK13539 cytochrome c biogenes 100.0 6.2E-43 1.3E-47 327.3 21.6 193 233-442 3-200 (207)
287 COG4608 AppF ABC-type oligopep 100.0 2.5E-43 5.4E-48 329.4 18.6 192 232-463 4-207 (268)
288 PRK10261 glutathione transport 100.0 2.2E-43 4.7E-48 380.6 20.8 217 232-456 12-258 (623)
289 TIGR01189 ccmA heme ABC export 100.0 5.8E-43 1.3E-47 325.3 20.2 192 233-439 1-197 (198)
290 PRK15134 microcin C ABC transp 100.0 5.6E-43 1.2E-47 372.0 22.7 218 232-457 5-247 (529)
291 PRK13543 cytochrome c biogenes 100.0 7.8E-43 1.7E-47 328.3 20.9 195 232-442 11-212 (214)
292 PRK10535 macrolide transporter 100.0 1.2E-42 2.6E-47 376.1 25.4 213 232-455 4-231 (648)
293 PLN03211 ABC transporter G-25; 100.0 1.1E-42 2.3E-47 374.9 24.8 198 247-455 81-295 (659)
294 PRK10982 galactose/methyl gala 100.0 7.3E-43 1.6E-47 368.0 22.5 212 235-455 1-222 (491)
295 TIGR03269 met_CoM_red_A2 methy 100.0 6.4E-43 1.4E-47 371.0 20.7 219 232-456 279-517 (520)
296 PRK13546 teichoic acids export 100.0 2.4E-42 5.1E-47 334.0 22.8 212 232-467 4-243 (264)
297 COG4172 ABC-type uncharacteriz 100.0 2.1E-42 4.7E-47 333.6 22.0 220 231-462 275-523 (534)
298 TIGR02633 xylG D-xylose ABC tr 100.0 1.3E-42 2.7E-47 367.2 22.3 210 233-455 2-229 (500)
299 TIGR02324 CP_lyasePhnL phospho 100.0 1.3E-42 2.9E-47 329.2 19.9 198 233-440 2-222 (224)
300 COG4559 ABC-type hemin transpo 100.0 1.9E-42 4E-47 308.3 18.8 213 233-458 2-232 (259)
301 COG4181 Predicted ABC-type tra 100.0 1.1E-42 2.3E-47 299.5 16.5 206 232-448 6-227 (228)
302 TIGR03771 anch_rpt_ABC anchore 100.0 8.3E-43 1.8E-47 330.1 17.5 192 255-464 1-208 (223)
303 TIGR01166 cbiO cobalt transpor 100.0 1.1E-42 2.5E-47 321.2 16.9 173 247-430 5-189 (190)
304 PRK13541 cytochrome c biogenes 100.0 2.4E-42 5.2E-47 320.3 19.1 188 233-438 2-193 (195)
305 TIGR03269 met_CoM_red_A2 methy 100.0 1.8E-42 3.8E-47 367.6 20.3 211 233-456 1-258 (520)
306 PRK13545 tagH teichoic acids e 100.0 1.1E-41 2.3E-46 349.0 24.7 211 232-466 21-242 (549)
307 COG4598 HisP ABC-type histidin 100.0 1E-42 2.2E-47 301.7 14.3 213 232-457 6-242 (256)
308 PRK13549 xylose transporter AT 100.0 2.7E-42 5.9E-47 364.8 20.2 217 232-455 259-493 (506)
309 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 4.8E-42 1E-46 325.0 19.2 193 233-449 23-224 (224)
310 TIGR00955 3a01204 The Eye Pigm 100.0 1.2E-42 2.7E-47 374.3 17.2 215 232-455 17-255 (617)
311 TIGR01257 rim_protein retinal- 100.0 6.9E-42 1.5E-46 395.6 23.7 215 231-457 927-1150(2272)
312 PRK09700 D-allose transporter 100.0 4.2E-42 9E-47 363.9 19.9 208 232-453 265-495 (510)
313 TIGR00956 3a01205 Pleiotropic 100.0 1.5E-41 3.3E-46 391.9 24.6 210 232-452 759-989 (1394)
314 COG1129 MglA ABC-type sugar tr 100.0 3.3E-41 7.1E-46 341.9 21.8 208 232-450 8-228 (500)
315 COG4161 ArtP ABC-type arginine 100.0 1.1E-41 2.4E-46 290.4 14.7 213 232-457 2-231 (242)
316 TIGR02633 xylG D-xylose ABC tr 100.0 3.1E-41 6.8E-46 356.5 20.0 212 232-453 257-489 (500)
317 TIGR01257 rim_protein retinal- 100.0 6.5E-41 1.4E-45 387.5 23.8 215 231-457 1936-2160(2272)
318 PRK15064 ABC transporter ATP-b 100.0 9.2E-41 2E-45 355.1 22.9 207 233-456 2-242 (530)
319 PRK10762 D-ribose transporter 100.0 3.7E-41 7.9E-46 355.8 19.1 210 232-455 257-483 (501)
320 PRK11288 araG L-arabinose tran 100.0 4.7E-41 1E-45 354.9 19.8 208 232-455 257-484 (501)
321 PRK15064 ABC transporter ATP-b 100.0 1.3E-40 2.8E-45 354.0 22.6 202 232-459 319-528 (530)
322 TIGR01187 potA spermidine/putr 100.0 4.3E-41 9.4E-46 335.1 17.4 180 265-457 1-191 (325)
323 PRK11819 putative ABC transpor 100.0 1.3E-40 2.8E-45 355.3 22.2 208 232-456 6-250 (556)
324 cd03236 ABC_RNaseL_inhibitor_d 100.0 3.5E-41 7.5E-46 324.0 15.3 200 236-449 4-220 (255)
325 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.3E-40 5E-45 291.4 19.1 143 233-444 1-144 (144)
326 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.6E-40 3.5E-45 354.5 21.0 208 232-456 4-248 (552)
327 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.4E-40 3.1E-45 318.5 18.4 192 240-455 1-206 (246)
328 PRK15177 Vi polysaccharide exp 100.0 2.7E-40 6E-45 310.3 18.2 188 249-459 2-195 (213)
329 KOG0060 Long-chain acyl-CoA tr 100.0 4.9E-38 1.1E-42 315.7 34.5 414 14-442 186-641 (659)
330 PRK15439 autoinducer 2 ABC tra 100.0 2.2E-40 4.7E-45 350.3 18.5 211 232-456 268-492 (510)
331 PRK10938 putative molybdenum t 100.0 4.8E-40 1E-44 346.6 18.4 205 232-449 260-485 (490)
332 COG4148 ModC ABC-type molybdat 100.0 6.1E-40 1.3E-44 303.2 16.4 196 252-458 16-220 (352)
333 PRK10982 galactose/methyl gala 100.0 8.6E-40 1.9E-44 344.7 18.9 211 232-453 250-477 (491)
334 COG4525 TauB ABC-type taurine 100.0 1.1E-39 2.4E-44 286.7 15.8 202 233-450 4-218 (259)
335 COG3845 ABC-type uncharacteriz 100.0 3.3E-39 7.2E-44 320.7 20.8 206 232-450 4-223 (501)
336 COG4604 CeuD ABC-type enteroch 100.0 7.3E-40 1.6E-44 288.3 12.1 219 233-465 2-233 (252)
337 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.1E-38 2.4E-43 285.4 19.3 155 234-444 1-157 (157)
338 PLN03073 ABC transporter F fam 100.0 2E-38 4.2E-43 343.7 22.5 197 232-454 508-712 (718)
339 cd03222 ABC_RNaseL_inhibitor T 100.0 1.2E-38 2.6E-43 288.6 16.7 145 236-446 4-151 (177)
340 PRK11819 putative ABC transpor 100.0 3.6E-38 7.8E-43 336.5 22.5 201 232-457 324-534 (556)
341 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 6E-38 1.3E-42 334.7 22.7 200 232-456 322-531 (552)
342 PRK10636 putative ABC transpor 100.0 4.6E-38 1E-42 339.5 21.8 198 232-455 312-516 (638)
343 PLN03140 ABC transporter G fam 100.0 7.1E-38 1.5E-42 360.4 23.9 211 232-452 867-1106(1470)
344 PRK11147 ABC transporter ATPas 100.0 7.4E-38 1.6E-42 338.6 22.5 199 232-455 319-527 (635)
345 COG4172 ABC-type uncharacteriz 100.0 9E-38 1.9E-42 301.7 19.5 223 232-465 6-257 (534)
346 PRK13409 putative ATPase RIL; 100.0 9.3E-38 2E-42 332.7 21.1 191 232-450 340-536 (590)
347 COG1101 PhnK ABC-type uncharac 100.0 4.1E-38 8.8E-43 281.2 15.2 203 245-449 17-231 (263)
348 COG4167 SapF ABC-type antimicr 100.0 7.2E-38 1.6E-42 272.3 16.3 212 248-469 27-254 (267)
349 PRK10636 putative ABC transpor 100.0 2.2E-37 4.7E-42 334.3 23.1 207 233-456 2-236 (638)
350 cd03238 ABC_UvrA The excision 100.0 1.6E-37 3.4E-42 281.0 18.5 157 246-445 7-166 (176)
351 COG1119 ModF ABC-type molybden 100.0 1.6E-36 3.4E-41 277.8 20.9 206 232-450 31-256 (257)
352 PRK11147 ABC transporter ATPas 100.0 3E-36 6.5E-41 326.1 24.0 205 233-456 4-243 (635)
353 TIGR00956 3a01205 Pleiotropic 100.0 5.3E-37 1.2E-41 354.3 18.3 200 247-454 74-298 (1394)
354 COG4152 ABC-type uncharacteriz 100.0 8.5E-37 1.8E-41 277.5 14.6 215 232-459 2-222 (300)
355 PRK13409 putative ATPase RIL; 100.0 5.4E-37 1.2E-41 326.8 13.9 193 236-443 77-287 (590)
356 PLN03140 ABC transporter G fam 100.0 2.5E-36 5.4E-41 347.7 16.1 205 248-455 179-426 (1470)
357 COG0396 sufC Cysteine desulfur 100.0 6.3E-35 1.4E-39 264.1 20.1 214 232-456 3-233 (251)
358 PLN03073 ABC transporter F fam 100.0 3.7E-35 8E-40 318.2 20.8 220 231-456 176-431 (718)
359 PF00005 ABC_tran: ABC transpo 100.0 7.8E-36 1.7E-40 260.7 12.0 136 250-398 1-137 (137)
360 COG1134 TagH ABC-type polysacc 100.0 1.5E-34 3.3E-39 265.2 18.5 189 247-457 40-237 (249)
361 KOG0061 Transporter, ABC super 100.0 4E-35 8.6E-40 313.2 16.9 215 231-455 24-259 (613)
362 COG4136 ABC-type uncharacteriz 100.0 1.1E-34 2.3E-39 244.8 15.3 192 232-438 2-205 (213)
363 COG4674 Uncharacterized ABC-ty 100.0 8.7E-35 1.9E-39 255.9 15.3 214 232-458 5-237 (249)
364 COG0488 Uup ATPase components 100.0 2.3E-34 4.9E-39 299.4 20.5 208 232-458 3-242 (530)
365 cd03270 ABC_UvrA_I The excisio 100.0 7.5E-34 1.6E-38 269.0 10.8 188 246-449 7-226 (226)
366 COG0488 Uup ATPase components 100.0 5.2E-32 1.1E-36 281.8 22.9 202 231-457 320-526 (530)
367 KOG0064 Peroxisomal long-chain 100.0 4.3E-30 9.3E-35 255.3 34.3 411 14-440 221-681 (728)
368 COG4133 CcmA ABC-type transpor 100.0 7.4E-33 1.6E-37 243.0 13.1 188 233-434 3-196 (209)
369 COG4586 ABC-type uncharacteriz 100.0 7E-33 1.5E-37 255.9 12.1 209 248-464 38-254 (325)
370 COG4107 PhnK ABC-type phosphon 100.0 7.5E-32 1.6E-36 233.0 16.2 227 232-466 6-252 (258)
371 cd03271 ABC_UvrA_II The excisi 100.0 4.4E-32 9.6E-37 259.8 15.0 192 249-451 10-261 (261)
372 cd03278 ABC_SMC_barmotin Barmo 100.0 3.8E-32 8.2E-37 251.6 13.5 164 251-442 14-190 (197)
373 cd03279 ABC_sbcCD SbcCD and ot 100.0 6.3E-31 1.4E-35 247.0 12.9 192 232-445 5-211 (213)
374 cd03272 ABC_SMC3_euk Eukaryoti 100.0 7.4E-31 1.6E-35 251.8 12.9 192 232-441 3-234 (243)
375 COG4778 PhnL ABC-type phosphon 100.0 1.2E-30 2.6E-35 224.8 10.2 200 233-442 5-227 (235)
376 KOG0059 Lipid exporter ABCA1 a 100.0 2.6E-30 5.6E-35 287.6 13.6 218 231-460 563-791 (885)
377 cd03273 ABC_SMC2_euk Eukaryoti 100.0 1E-28 2.2E-33 238.0 13.9 178 260-441 25-242 (251)
378 cd03274 ABC_SMC4_euk Eukaryoti 100.0 5.3E-29 1.1E-33 233.1 9.8 184 232-442 5-204 (212)
379 COG4138 BtuD ABC-type cobalami 100.0 1.9E-29 4.1E-34 218.3 5.4 207 233-457 4-222 (248)
380 cd03240 ABC_Rad50 The catalyti 100.0 2.5E-28 5.4E-33 227.4 12.9 162 254-442 17-197 (204)
381 PRK00349 uvrA excinuclease ABC 100.0 9.1E-28 2E-32 264.5 19.4 104 358-461 818-932 (943)
382 KOG0927 Predicted transporter 100.0 6.1E-29 1.3E-33 248.7 8.7 196 232-451 389-591 (614)
383 PRK00635 excinuclease ABC subu 99.9 5.8E-27 1.3E-31 268.1 20.1 212 232-458 600-908 (1809)
384 COG1129 MglA ABC-type sugar tr 99.9 1.1E-26 2.4E-31 236.2 19.1 211 232-452 263-486 (500)
385 KOG0065 Pleiotropic drug resis 99.9 2.4E-27 5.1E-32 259.0 9.7 198 245-452 802-1017(1391)
386 cd03275 ABC_SMC1_euk Eukaryoti 99.9 5.1E-27 1.1E-31 225.5 10.6 182 261-442 23-233 (247)
387 TIGR00630 uvra excinuclease AB 99.9 1.2E-25 2.6E-30 247.3 20.2 216 232-454 612-923 (924)
388 COG3845 ABC-type uncharacteriz 99.9 7.9E-25 1.7E-29 218.4 18.8 213 231-453 256-489 (501)
389 KOG0062 ATPase component of AB 99.9 1.1E-24 2.3E-29 217.3 16.9 213 230-472 360-578 (582)
390 KOG0927 Predicted transporter 99.9 5E-24 1.1E-28 213.6 17.3 219 230-457 73-310 (614)
391 cd03276 ABC_SMC6_euk Eukaryoti 99.9 2.4E-24 5.1E-29 199.6 12.3 172 250-444 12-192 (198)
392 KOG0066 eIF2-interacting prote 99.9 4.9E-24 1.1E-28 207.9 13.3 197 232-452 586-787 (807)
393 KOG0062 ATPase component of AB 99.9 1.6E-24 3.4E-29 216.1 8.5 202 230-458 78-287 (582)
394 cd01128 rho_factor Transcripti 99.9 5.4E-24 1.2E-28 202.6 9.5 192 255-467 11-228 (249)
395 COG4170 SapD ABC-type antimicr 99.9 4.4E-23 9.5E-28 183.9 14.1 219 234-463 5-256 (330)
396 cd03239 ABC_SMC_head The struc 99.9 5.7E-23 1.2E-27 186.9 13.0 85 352-442 83-172 (178)
397 COG1245 Predicted ATPase, RNas 99.9 7.6E-23 1.7E-27 201.1 13.8 179 238-442 341-531 (591)
398 KOG2355 Predicted ABC-type tra 99.9 2.3E-21 5E-26 172.4 17.5 208 231-454 12-235 (291)
399 cd03277 ABC_SMC5_euk Eukaryoti 99.9 1.3E-21 2.8E-26 183.2 12.5 180 251-444 15-211 (213)
400 cd03241 ABC_RecN RecN ATPase i 99.9 1.5E-21 3.3E-26 190.5 13.4 77 369-445 170-250 (276)
401 cd03280 ABC_MutS2 MutS2 homolo 99.9 1.3E-21 2.9E-26 181.9 10.7 145 250-449 17-172 (200)
402 KOG0065 Pleiotropic drug resis 99.8 5.9E-21 1.3E-25 209.3 12.7 204 247-455 128-350 (1391)
403 COG2401 ABC-type ATPase fused 99.8 1.7E-20 3.7E-25 182.6 13.2 196 230-447 355-589 (593)
404 COG0178 UvrA Excinuclease ATPa 99.8 9E-20 2E-24 190.8 18.8 225 232-463 606-926 (935)
405 PRK00635 excinuclease ABC subu 99.8 9.2E-20 2E-24 209.5 18.7 210 249-458 1505-1798(1809)
406 cd03227 ABC_Class2 ABC-type Cl 99.8 8E-20 1.7E-24 164.1 13.0 135 254-442 15-155 (162)
407 COG1245 Predicted ATPase, RNas 99.8 1.6E-19 3.4E-24 178.0 11.7 188 237-441 79-287 (591)
408 cd03285 ABC_MSH2_euk MutS2 hom 99.8 1.1E-19 2.5E-24 171.1 9.6 152 247-450 17-175 (222)
409 cd03242 ABC_RecF RecF is a rec 99.8 1.1E-18 2.3E-23 169.9 13.4 189 250-445 12-269 (270)
410 cd00820 PEPCK_HprK Phosphoenol 99.8 5E-19 1.1E-23 144.9 6.0 75 248-330 3-77 (107)
411 cd03243 ABC_MutS_homologs The 99.8 2.4E-18 5.2E-23 160.3 10.5 153 253-454 22-177 (202)
412 cd03283 ABC_MutS-like MutS-lik 99.7 2.3E-18 5E-23 159.5 8.6 144 247-440 14-163 (199)
413 PRK00349 uvrA excinuclease ABC 99.7 4.6E-18 1E-22 188.0 12.2 100 358-457 477-586 (943)
414 TIGR00606 rad50 rad50. This fa 99.7 2.1E-17 4.5E-22 192.2 14.0 119 319-441 1153-1289(1311)
415 PF00664 ABC_membrane: ABC tra 99.7 1.2E-15 2.7E-20 146.4 24.1 182 2-183 90-274 (275)
416 TIGR02858 spore_III_AA stage I 99.7 3.2E-17 6.9E-22 158.0 12.6 142 261-455 112-268 (270)
417 TIGR00630 uvra excinuclease AB 99.7 1.8E-17 4E-22 183.0 11.4 100 358-457 475-584 (924)
418 KOG0066 eIF2-interacting prote 99.7 6.8E-17 1.5E-21 158.3 6.7 209 232-451 264-494 (807)
419 cd03284 ABC_MutS1 MutS1 homolo 99.7 3.4E-16 7.4E-21 146.9 9.4 151 247-454 18-179 (216)
420 cd03282 ABC_MSH4_euk MutS4 hom 99.6 1.6E-15 3.4E-20 140.9 11.3 140 246-434 15-157 (204)
421 PF02463 SMC_N: RecF/RecN/SMC 99.6 1.7E-15 3.7E-20 143.1 11.0 169 251-441 16-212 (220)
422 KOG0063 RNAse L inhibitor, ABC 99.6 2.7E-15 5.9E-20 147.0 11.0 200 240-461 343-553 (592)
423 PRK00064 recF recombination pr 99.6 2E-14 4.3E-19 145.4 16.4 76 368-445 272-359 (361)
424 PHA02562 46 endonuclease subun 99.6 1.2E-15 2.6E-20 164.2 7.1 106 338-445 432-555 (562)
425 PRK07721 fliI flagellum-specif 99.5 1.9E-13 4.1E-18 140.1 16.6 177 248-454 147-341 (438)
426 PTZ00132 GTP-binding nuclear p 99.5 3.7E-14 8E-19 133.4 7.0 143 262-416 11-204 (215)
427 cd03281 ABC_MSH5_euk MutS5 hom 99.5 3.7E-13 8.1E-18 126.1 11.9 135 248-434 17-160 (213)
428 TIGR00634 recN DNA repair prot 99.4 3.2E-13 6.9E-18 144.5 10.1 77 368-444 439-519 (563)
429 PRK10869 recombination and rep 99.4 4.2E-13 9E-18 142.5 10.1 76 369-444 430-509 (553)
430 smart00534 MUTSac ATPase domai 99.4 3.2E-13 6.8E-18 124.0 6.7 76 367-445 59-139 (185)
431 PRK13695 putative NTPase; Prov 99.4 8.9E-13 1.9E-17 119.8 6.3 79 367-448 76-156 (174)
432 TIGR01069 mutS2 MutS2 family p 99.4 1.4E-12 3.1E-17 142.9 8.8 144 232-431 295-448 (771)
433 cd03287 ABC_MSH3_euk MutS3 hom 99.3 4.9E-12 1.1E-16 118.8 10.1 137 247-433 18-159 (222)
434 PRK14079 recF recombination pr 99.3 2.4E-11 5.3E-16 122.3 14.5 77 368-449 262-347 (349)
435 TIGR02788 VirB11 P-type DNA tr 99.3 2.8E-12 6E-17 127.1 7.5 143 253-455 137-280 (308)
436 PRK08533 flagellar accessory p 99.3 3.6E-11 7.7E-16 114.1 14.3 155 233-441 8-184 (230)
437 KOG0063 RNAse L inhibitor, ABC 99.3 5.7E-12 1.2E-16 124.0 7.1 162 258-441 98-287 (592)
438 TIGR03238 dnd_assoc_3 dnd syst 99.2 4.7E-12 1E-16 128.5 4.7 67 248-317 20-87 (504)
439 cd01124 KaiC KaiC is a circadi 99.2 8E-11 1.7E-15 108.0 11.9 81 361-441 63-163 (187)
440 PRK01156 chromosome segregatio 99.2 2.4E-11 5.2E-16 137.6 9.6 76 366-441 798-883 (895)
441 COG0178 UvrA Excinuclease ATPa 99.2 4.4E-11 9.6E-16 126.3 10.6 95 364-458 476-579 (935)
442 PRK06793 fliI flagellum-specif 99.2 8.5E-11 1.8E-15 119.7 11.4 168 232-450 130-305 (432)
443 PRK00409 recombination and DNA 99.2 4.4E-11 9.5E-16 131.7 9.5 78 367-446 388-468 (782)
444 PRK03918 chromosome segregatio 99.2 4.6E-11 9.9E-16 135.4 9.2 75 368-442 787-868 (880)
445 TIGR02168 SMC_prok_B chromosom 99.2 3.8E-11 8.2E-16 140.0 8.1 75 366-440 1086-1164(1179)
446 cd01131 PilT Pilus retraction 99.1 6.9E-11 1.5E-15 109.6 7.1 118 262-440 3-121 (198)
447 PRK13830 conjugal transfer pro 99.1 1.9E-10 4.2E-15 127.8 11.6 66 385-450 650-727 (818)
448 TIGR00618 sbcc exonuclease Sbc 99.1 1.3E-10 2.8E-15 133.3 10.5 76 368-443 949-1036(1042)
449 TIGR00767 rho transcription te 99.1 3.4E-10 7.4E-15 113.3 10.3 81 198-287 104-195 (415)
450 TIGR02169 SMC_prok_A chromosom 99.1 1.5E-10 3.3E-15 135.0 9.0 85 358-442 1057-1151(1164)
451 cd01120 RecA-like_NTPases RecA 99.1 8.3E-10 1.8E-14 98.3 11.4 129 262-431 1-140 (165)
452 smart00382 AAA ATPases associa 99.1 4.9E-09 1.1E-13 90.2 14.7 117 259-427 1-125 (148)
453 PRK00300 gmk guanylate kinase; 99.1 4.1E-10 8.8E-15 105.1 8.0 79 258-344 3-93 (205)
454 cd03286 ABC_MSH6_euk MutS6 hom 99.0 2.2E-09 4.8E-14 100.6 11.3 138 247-434 17-159 (218)
455 PRK06067 flagellar accessory p 99.0 6.3E-09 1.4E-13 99.2 13.3 74 369-442 100-187 (234)
456 PF13304 AAA_21: AAA domain; P 99.0 1.3E-09 2.9E-14 104.1 8.0 63 369-431 236-302 (303)
457 PRK02224 chromosome segregatio 98.9 1.6E-09 3.4E-14 122.8 8.4 76 368-443 780-869 (880)
458 PRK06002 fliI flagellum-specif 98.9 1.7E-09 3.8E-14 110.3 7.7 86 230-317 137-229 (450)
459 PRK10246 exonuclease subunit S 98.9 3.3E-09 7.1E-14 121.2 9.4 76 367-442 947-1032(1047)
460 TIGR02655 circ_KaiC circadian 98.8 1.4E-09 3E-14 114.5 1.5 156 256-441 17-190 (484)
461 COG3910 Predicted ATPase [Gene 98.8 7.6E-08 1.7E-12 85.5 11.7 83 369-453 129-213 (233)
462 PRK13891 conjugal transfer pro 98.8 1.2E-07 2.6E-12 106.2 16.1 54 380-433 680-735 (852)
463 PF09818 ABC_ATPase: Predicted 98.8 5.3E-08 1.2E-12 97.8 11.4 173 238-447 227-418 (448)
464 TIGR02524 dot_icm_DotB Dot/Icm 98.8 1.1E-08 2.4E-13 103.0 6.7 87 258-345 132-233 (358)
465 PRK01889 GTPase RsgA; Reviewed 98.8 5.9E-09 1.3E-13 105.2 4.4 97 249-348 184-285 (356)
466 PRK07196 fliI flagellum-specif 98.7 6.7E-09 1.4E-13 106.1 4.5 80 248-328 144-233 (434)
467 cd01130 VirB11-like_ATPase Typ 98.7 1.1E-08 2.5E-13 93.9 5.3 77 249-328 14-93 (186)
468 PRK06995 flhF flagellar biosyn 98.7 1.1E-08 2.4E-13 105.9 5.0 159 250-446 246-430 (484)
469 cd01125 repA Hexameric Replica 98.7 2.6E-08 5.6E-13 95.3 7.2 44 384-428 108-159 (239)
470 PRK10733 hflB ATP-dependent me 98.7 1.5E-09 3.3E-14 117.7 -1.5 28 256-285 183-210 (644)
471 TIGR01420 pilT_fam pilus retra 98.7 1E-07 2.2E-12 96.0 10.1 120 257-437 119-239 (343)
472 TIGR00611 recf recF protein. A 98.6 4.7E-08 1E-12 99.0 6.9 63 368-432 274-345 (365)
473 PRK08149 ATP synthase SpaL; Va 98.6 4.8E-08 1E-12 99.7 5.6 66 248-314 140-212 (428)
474 PRK10078 ribose 1,5-bisphospho 98.6 6.1E-08 1.3E-12 89.0 4.9 56 260-318 2-57 (186)
475 TIGR01026 fliI_yscN ATPase Fli 98.5 6.6E-07 1.4E-11 92.2 11.9 180 248-454 152-346 (440)
476 PRK09862 putative ATP-dependen 98.5 4E-07 8.7E-12 95.1 10.3 64 235-300 187-250 (506)
477 TIGR00101 ureG urease accessor 98.5 2E-07 4.3E-12 86.4 7.2 106 262-374 3-108 (199)
478 cd02023 UMPK Uridine monophosp 98.5 6.2E-08 1.3E-12 89.8 3.6 106 262-402 1-113 (198)
479 PLN02796 D-glycerate 3-kinase 98.5 3.9E-08 8.4E-13 97.1 1.4 62 247-308 79-151 (347)
480 PRK13898 type IV secretion sys 98.4 3.8E-06 8.2E-11 94.1 16.2 45 252-296 438-482 (800)
481 cd01123 Rad51_DMC1_radA Rad51_ 98.4 5.3E-07 1.1E-11 85.9 8.0 134 257-428 16-170 (235)
482 TIGR02322 phosphon_PhnN phosph 98.4 3.3E-07 7.3E-12 83.4 6.3 62 260-322 1-78 (179)
483 TIGR03263 guanyl_kin guanylate 98.4 2E-07 4.3E-12 85.0 4.6 78 260-345 1-90 (180)
484 PLN03210 Resistant to P. syrin 98.4 7.6E-07 1.6E-11 103.5 10.5 44 253-296 200-244 (1153)
485 PRK15494 era GTPase Era; Provi 98.4 1.5E-07 3.4E-12 94.5 3.8 54 229-283 15-75 (339)
486 PRK06315 type III secretion sy 98.4 2E-07 4.4E-12 95.5 4.2 100 248-348 153-276 (442)
487 cd00009 AAA The AAA+ (ATPases 98.4 1.6E-06 3.5E-11 75.0 9.2 54 375-429 72-131 (151)
488 PRK09825 idnK D-gluconate kina 98.4 3.3E-07 7.2E-12 83.2 5.0 53 259-317 2-55 (176)
489 TIGR02680 conserved hypothetic 98.4 5.5E-07 1.2E-11 105.4 7.7 61 367-429 1245-1317(1353)
490 TIGR02903 spore_lon_C ATP-depe 98.4 1.6E-06 3.5E-11 93.7 10.5 110 259-414 174-291 (615)
491 TIGR03881 KaiC_arch_4 KaiC dom 98.4 5.3E-06 1.1E-10 78.7 12.9 57 256-316 16-76 (229)
492 COG0419 SbcC ATPase involved i 98.4 9.7E-07 2.1E-11 100.1 9.0 78 367-444 813-899 (908)
493 cd00071 GMPK Guanosine monopho 98.3 3.3E-07 7E-12 79.8 3.5 73 263-343 2-87 (137)
494 TIGR00235 udk uridine kinase. 98.3 3E-07 6.5E-12 85.9 3.1 29 258-286 4-32 (207)
495 PTZ00035 Rad51 protein; Provis 98.3 3.5E-06 7.5E-11 84.4 10.8 81 256-342 114-201 (337)
496 TIGR00152 dephospho-CoA kinase 98.3 1.5E-06 3.3E-11 79.9 6.9 70 373-444 61-134 (188)
497 PRK03846 adenylylsulfate kinas 98.3 6.6E-07 1.4E-11 83.0 4.3 56 258-317 22-78 (198)
498 PRK07594 type III secretion sy 98.3 1.2E-06 2.5E-11 89.8 5.8 67 232-300 129-195 (433)
499 TIGR03497 FliI_clade2 flagella 98.3 1.1E-06 2.4E-11 89.8 5.6 52 248-300 126-177 (413)
500 PRK06731 flhF flagellar biosyn 98.2 3.1E-06 6.7E-11 81.8 8.2 28 259-286 74-101 (270)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-109 Score=854.60 Aligned_cols=468 Identities=28% Similarity=0.426 Sum_probs=419.7
Q ss_pred CCccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (479)
Q Consensus 1 ~~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
++|||.+++||+++|+++|+..+...++..+...+.+.+..++.+.+|++++|.++++++..+|+...+.++|.+..++.
T Consensus 236 iaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rkl 315 (716)
T KOG0058|consen 236 IAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKL 315 (716)
T ss_pred hhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999988888888778888888888889
Q ss_pred HHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 011713 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI-- 158 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 158 (479)
.+..+++.++.++...|.+++++|||+|+.|+...++|.+..+...+...+.......+....++..++..+.++++.
T Consensus 316 S~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~ 395 (716)
T KOG0058|consen 316 SKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGH 395 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccc
Confidence 888899999999999999999999999999999999999988887776655443333333333444444444444332
Q ss_pred HHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeE
Q 011713 159 VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (479)
Q Consensus 159 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~v 238 (479)
....|.++.|.+..|+.|...+...+..++..+..+.++..|.+|++|++|.+|.-+.. +. ..+. ...|.|+|+||
T Consensus 396 Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~--G~-~~p~-~~~G~IeF~~V 471 (716)
T KOG0058|consen 396 LVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT--GT-LAPD-HLQGVIEFEDV 471 (716)
T ss_pred hhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC--Cc-cccc-cccceEEEEEe
Confidence 22448899999999999999999999999999999999999999999999987654321 11 1111 35789999999
Q ss_pred EEEeCCC-CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCC
Q 011713 239 KVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (479)
Q Consensus 239 sf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~ 317 (479)
+|+||.. +.+||+|+||+|+|||+||+||||||||||+++||.|||+|++|+|++||+||++++...||++||+|.|||
T Consensus 472 sFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEP 551 (716)
T KOG0058|consen 472 SFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEP 551 (716)
T ss_pred eeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccc
Confidence 9999854 346999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCC
Q 011713 318 TLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEA 396 (479)
Q Consensus 318 ~lF~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~ 396 (479)
.||++||+|||.++. ++++|+|++|+++|++|+||.++|+||||.|||+|..|||||||||||||||+|||.|||||||
T Consensus 552 vLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEA 631 (716)
T KOG0058|consen 552 VLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEA 631 (716)
T ss_pred eeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEech
Confidence 999999999999874 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccC-chHHHHHHHHHHhh
Q 011713 397 TASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTN-SAFSKLVAEYRSSY 472 (479)
Q Consensus 397 TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~-g~y~~l~~~~~~~~ 472 (479)
|||||+++|..++++|.+..+++|||+|||||||+++||+|+|+++|+|+|.|+|+|||++. |.|++|+++|....
T Consensus 632 TSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~~~ 708 (716)
T KOG0058|consen 632 TSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQLDSG 708 (716)
T ss_pred hhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999966 89999999886544
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.3e-101 Score=825.92 Aligned_cols=464 Identities=28% Similarity=0.428 Sum_probs=419.7
Q ss_pred CCccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (479)
Q Consensus 1 ~~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
++||+++++|++++|+. |.+.+..+++..+...+..++.+++++++|++++|+++++++..++++..+...+.+..++.
T Consensus 242 l~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~ 320 (709)
T COG2274 242 LSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRK 320 (709)
T ss_pred HHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999995 89999999999999999999999999999999999999887777666665555555555555
Q ss_pred HHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 011713 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIV- 159 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 159 (479)
.+......+..++++.|+++|+++||+.+.|+++..+|++.+.+..+..++......+......++..+..++++++..
T Consensus 321 ~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~ 400 (709)
T COG2274 321 TRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAI 400 (709)
T ss_pred HHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666777889999999999999999999999999999999999988888777777777777776666665555532
Q ss_pred -HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeE
Q 011713 160 -LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (479)
Q Consensus 160 -~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~v 238 (479)
.+.+.++.|.+.++.++...+..|+..+.+.+.++++...+.+|+.++++.|+|.+... .....++..|+|+|+||
T Consensus 401 lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~---~~~~~~~~~g~I~~~nv 477 (709)
T COG2274 401 LVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDK---TLIHLPKLQGEIEFENV 477 (709)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc---ccccccccCceEEEEEE
Confidence 24589999999999999999999999999999999999999999999999988754321 11222345789999999
Q ss_pred EEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCc
Q 011713 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (479)
Q Consensus 239 sf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~ 318 (479)
+|+|+++++++|+|+||+|+|||+|||||+||||||||+|+|+|+|+|++|+|++||+|++++++.++|++|+||+||++
T Consensus 478 sf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~ 557 (709)
T COG2274 478 SFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPF 557 (709)
T ss_pred EEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccch
Confidence 99999887889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 011713 319 LFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (479)
Q Consensus 319 lF~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~T 397 (479)
||+|||+|||+++. ++++|++++||+.||+|+||+++|+||||+|||+|.+|||||||||+|||||++||+||||||||
T Consensus 558 Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaT 637 (709)
T COG2274 558 LFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEAT 637 (709)
T ss_pred hhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcc
Confidence 99999999999864 78899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHH
Q 011713 398 ASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEY 468 (479)
Q Consensus 398 SaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~ 468 (479)
||||++||+.|.++|.+..++||+|+||||++++++||||+|||+|+|+|+|+|+||++.+|.|+++|+.|
T Consensus 638 SaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~~q 708 (709)
T COG2274 638 SALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQ 708 (709)
T ss_pred cccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcChHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875
No 3
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.3e-99 Score=837.70 Aligned_cols=470 Identities=53% Similarity=0.873 Sum_probs=448.1
Q ss_pred CCccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (479)
Q Consensus 1 ~~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
|+|||.+|+|+|+||+++|++.+|..+|..+..++..++.+++.++++.+..|+++++++|+.+++++++++|.+..|++
T Consensus 906 m~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReL 985 (1381)
T KOG0054|consen 906 MSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSREL 985 (1381)
T ss_pred chhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVL 160 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (479)
.|.+...++++.+++.|+++|+.|||+|+.+++|.+++.+..|.+.+..+......+|+..+++.+.++++.+++++.++
T Consensus 986 kRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl 1065 (1381)
T KOG0054|consen 986 KRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVL 1065 (1381)
T ss_pred HHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888877777665
Q ss_pred hCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEE
Q 011713 161 LPGK-HLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (479)
Q Consensus 161 ~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vs 239 (479)
.... .++|.++..++|+..+...++++.+...++++.++|+||+.++.+.|+|.+...+...+++.||..|+|+|+|++
T Consensus 1066 ~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~ 1145 (1381)
T KOG0054|consen 1066 LPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLS 1145 (1381)
T ss_pred ccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeE
Confidence 5543 678999999999999999999999999999999999999999999988855444444477889999999999999
Q ss_pred EEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCcc
Q 011713 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (479)
Q Consensus 240 f~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~l 319 (479)
.+|+++.|+||+||||+|+|||||||||+||||||||++.|.|+.+|.+|+|.|||+||+++++++||++++++||||.|
T Consensus 1146 ~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvL 1225 (1381)
T KOG0054|consen 1146 LRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVL 1225 (1381)
T ss_pred EEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCce
Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCC
Q 011713 320 FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATAS 399 (479)
Q Consensus 320 F~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSa 399 (479)
|+||+|.||+|+++++|+++|+|+++|+|.++|+++|.|+|++|.|+|.|+|-||||.+||||||||+++||+|||||++
T Consensus 1226 FsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAs 1305 (1381)
T KOG0054|consen 1226 FSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATAS 1305 (1381)
T ss_pred ecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhc-cCchHHHHHHHHHH
Q 011713 400 IDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMK-TNSAFSKLVAEYRS 470 (479)
Q Consensus 400 LD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~-~~g~y~~l~~~~~~ 470 (479)
+|++|+..||++|++.+++||||.||||++|+.+||||+|||+|+|+|.|+|++|++ +++.|+++..+...
T Consensus 1306 VD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~~~ 1377 (1381)
T KOG0054|consen 1306 VDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEAAL 1377 (1381)
T ss_pred CChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999997 57788777766544
No 4
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.6e-99 Score=818.17 Aligned_cols=466 Identities=24% Similarity=0.333 Sum_probs=381.5
Q ss_pred CCcccc--CCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 1 MLFFDS--TPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAR 78 (479)
Q Consensus 1 ~~~f~~--~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 78 (479)
++|||+ ++ |.+.+|+.+|...++..+...+..+++++..+++.+++.|+++|+++++++...|++.+....+.+...
T Consensus 755 ~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~ 833 (1228)
T KOG0055|consen 755 VGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLK 833 (1228)
T ss_pred CcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 479986 45 999999999999999999999999999999999999999999999998765554444433222222222
Q ss_pred HHHHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 79 ELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI 158 (479)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (479)
...........+..+...|++++++||++|++|+++.+.|.+..+...+...+..........+...+..++..+..++.
T Consensus 834 ~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G 913 (1228)
T KOG0055|consen 834 GFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYG 913 (1228)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22233333445567789999999999999999999999999988887776555444333333333333333333333332
Q ss_pred -HH-hCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEE
Q 011713 159 -VL-LPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELE 236 (479)
Q Consensus 159 -~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~ 236 (479)
++ ..+..++..+...+.....-...+.....+..++.++..|+.+++++++.++..+...+ .....++..|+|+|+
T Consensus 914 ~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~--~~~~~~~~~G~I~~~ 991 (1228)
T KOG0055|consen 914 ARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDST--SGGKLPNVKGDIEFR 991 (1228)
T ss_pred HHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCC--CCCccccceeEEEEe
Confidence 12 23666666544333222222233444556667888999999999999998764322111 111122357899999
Q ss_pred eEEEEeCCC-CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcC
Q 011713 237 DLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ 315 (479)
Q Consensus 237 ~vsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q 315 (479)
||+|+||.. +.+||+|+||+|++||++||||||||||||++.||.|||+|++|.|.|||+|++++++++||++||+|+|
T Consensus 992 ~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQ 1071 (1228)
T KOG0055|consen 992 NVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQ 1071 (1228)
T ss_pred eeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceecc
Confidence 999999743 2369999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccHHhhcCCC-CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEe
Q 011713 316 EPTLFRGSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILD 394 (479)
Q Consensus 316 ~~~lF~gTi~eNi~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLD 394 (479)
||.||++||||||+++ .+++++||.+||+.|++|+||.+||+||||+|||+|.+||||||||||||||++|||+|||||
T Consensus 1072 EP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLD 1151 (1228)
T KOG0055|consen 1072 EPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLD 1151 (1228)
T ss_pred CchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeee
Confidence 9999999999999998 458999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHHH
Q 011713 395 EATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEYR 469 (479)
Q Consensus 395 E~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~~ 469 (479)
|||||||.++|+.+|++|++...+||+|+|||||||+++||.|+|+++|+|+|+|||+||++++|.|++|++.|.
T Consensus 1152 EATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1152 EATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKRGIYFRLVQLQS 1226 (1228)
T ss_pred ccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhCCCchHHHhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998774
No 5
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.7e-95 Score=845.68 Aligned_cols=467 Identities=40% Similarity=0.694 Sum_probs=423.6
Q ss_pred CCccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (479)
Q Consensus 1 ~~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
++||+++++|++++|+++|++.++..++..+..++..++.+++.++++++.+|+++++++|+++++.++.+++.+..++.
T Consensus 1053 ~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 1132 (1522)
T TIGR00957 1053 MSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQL 1132 (1522)
T ss_pred hhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999888888888888887777777777777888888888888
Q ss_pred HHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVL 160 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (479)
.+.....++++.+++.|+++|+++||+|++++++.+++.+..+...+..+.......|+...+.++..+++++++.+.+.
T Consensus 1133 ~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 1212 (1522)
T TIGR00957 1133 KRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVI 1212 (1522)
T ss_pred HHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999988888877767777888877777655544444333333
Q ss_pred hCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEEE
Q 011713 161 LPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKV 240 (479)
Q Consensus 161 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vsf 240 (479)
..+.+++|.+++++.|...+..++..+...+..++.+++|++|+.++++.++|.+...+...++..||..|.|+|+||+|
T Consensus 1213 ~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf 1292 (1522)
T TIGR00957 1213 SRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCL 1292 (1522)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEE
Confidence 34778999999999999999999999999999999999999999999988766432112222334567778999999999
Q ss_pred EeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccc
Q 011713 241 RYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF 320 (479)
Q Consensus 241 ~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF 320 (479)
+|+++.+++|+||||+|+|||+|||||+||||||||+++|+|+|+|++|+|+|||+|+++++++++|++|++|||||+||
T Consensus 1293 ~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF 1372 (1522)
T TIGR00957 1293 RYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLF 1372 (1522)
T ss_pred EeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCccc
Confidence 99876667999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCC
Q 011713 321 RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASI 400 (479)
Q Consensus 321 ~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaL 400 (479)
+|||||||+++++++||++++|+++|+++++|.++|+||||+|||+|.+||||||||||||||++++|+|||||||||+|
T Consensus 1373 ~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSal 1452 (1522)
T TIGR00957 1373 SGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAV 1452 (1522)
T ss_pred CccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccC
Confidence 99999999977789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHH
Q 011713 401 DSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAE 467 (479)
Q Consensus 401 D~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~ 467 (479)
|++||+.|+++|++.+++||+|+||||++++.+||||+|||+|+|+|.|+|+||++++|.|++|+++
T Consensus 1453 D~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1453 DLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999886
No 6
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=3.6e-95 Score=778.64 Aligned_cols=463 Identities=27% Similarity=0.428 Sum_probs=395.1
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
+||+++++|++++|+++|++.++..+.+....+..+++.+++.+++++..+|.++++++...++..+....+.++.++..
T Consensus 101 ~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 180 (567)
T COG1132 101 SFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLS 180 (567)
T ss_pred HHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999888666666788888899999999999988776665555555555554445666
Q ss_pred HHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 011713 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 159 (479)
+......+++++.+.|.++|+++||+|+.++...+++.+..+...+...+..............+..+...++.++ ..
T Consensus 181 ~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (567)
T COG1132 181 RRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFL 260 (567)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677889999999999999999999999888887776665555443333333333223333333322222222 12
Q ss_pred HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEE
Q 011713 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (479)
Q Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vs 239 (479)
...+.++.|.+.+++.|...+..++..+...+..++.+..+.+|++++++.+++... ...+ .....++|+|+||+
T Consensus 261 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~I~f~~vs 335 (567)
T COG1132 261 VLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPDP--LKDTIGSIEFENVS 335 (567)
T ss_pred HHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCCC--CCCCCCeEEEEEEE
Confidence 234678899999999999999999999999999999999999999999997554211 1111 11235679999999
Q ss_pred EEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCcc
Q 011713 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (479)
Q Consensus 240 f~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~l 319 (479)
|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.++||++|++|||||+|
T Consensus 336 f~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~L 414 (567)
T COG1132 336 FSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL 414 (567)
T ss_pred EEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEccccee
Confidence 999863 4699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 011713 320 FRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA 398 (479)
Q Consensus 320 F~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TS 398 (479)
|+|||+|||+++. ++++||+++||+.|+++|||+++|+||||+|||+|.+||||||||||||||+++||||||||||||
T Consensus 415 F~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTS 494 (567)
T COG1132 415 FSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATS 494 (567)
T ss_pred ecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 9999999999875 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHHHH
Q 011713 399 SIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEYRS 470 (479)
Q Consensus 399 aLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~~~ 470 (479)
+||++||+.|++++++..++||+|+||||++++++||+|+|||+|+|+|.|+|+||++++|.|++||+.+..
T Consensus 495 alD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~~~~ 566 (567)
T COG1132 495 ALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQGG 566 (567)
T ss_pred ccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHhhc
Confidence 999999999999999888999999999999999999999999999999999999999999999999998753
No 7
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.3e-94 Score=778.29 Aligned_cols=464 Identities=21% Similarity=0.279 Sum_probs=386.7
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
+||+++++|++++|+++|++.++.++...+..++..++.+++.++++++++|+++++++.++++..++...+.++.++..
T Consensus 112 ~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~ 191 (588)
T PRK11174 112 AWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADAN 191 (588)
T ss_pred hhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999988999998888888888999999999988766655555555555555555555
Q ss_pred HHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 011713 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL-IVL 160 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 160 (479)
+...+..+++++.+.|.++|+++||+|++|+.+.+++.+..++..+...+..............+..+..++++++ ...
T Consensus 192 ~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (588)
T PRK11174 192 RRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFS 271 (588)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677888999999999999999999999999999887777666554443333333333333322222111111 111
Q ss_pred hCCcccHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCc
Q 011713 161 LPGKHLPGFV---------GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHG 231 (479)
Q Consensus 161 ~~~~~~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~ 231 (479)
..|.++.|.+ .+++.+...+..|+..+...+..++++..+.+|+.++++.+++.+.. ...+. ..+..+
T Consensus 272 ~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~~~-~~~~~~ 348 (588)
T PRK11174 272 YLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQ--GEKEL-ASNDPV 348 (588)
T ss_pred HhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--Ccccc-CCCCCc
Confidence 2244444432 22234555677888889999999999999999999999876543211 11000 101234
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+|+||+|.|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+| |++|+|++||+|+++++.+++|++|+
T Consensus 349 ~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~ 426 (588)
T PRK11174 349 TIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLS 426 (588)
T ss_pred eEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheE
Confidence 69999999988654 56999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred EEcCCCccccccHHhhcCCC-CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCE
Q 011713 312 IIPQEPTLFRGSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 390 (479)
Q Consensus 312 ~V~Q~~~lF~gTi~eNi~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~i 390 (479)
||||||+||+|||||||+++ +++++||+++||+.|++++||++||+||||.|||+|.+|||||||||+||||+++||+|
T Consensus 427 ~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~I 506 (588)
T PRK11174 427 WVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQL 506 (588)
T ss_pred EecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987 47999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHHHH
Q 011713 391 LILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEYRS 470 (479)
Q Consensus 391 liLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~~~ 470 (479)
|||||||||||++||+.|+++|++..+++|+|+||||+++++.||+|+||++|+|+|+|+|+||++++|.|+++++.|.+
T Consensus 507 liLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~~l~~~q~~ 586 (588)
T PRK11174 507 LLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQE 586 (588)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcchHHHHHHHHhhc
Confidence 99999999999999999999999998999999999999999999999999999999999999999999999999988764
No 8
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.2e-94 Score=837.21 Aligned_cols=469 Identities=41% Similarity=0.713 Sum_probs=409.4
Q ss_pred CCccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (479)
Q Consensus 1 ~~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
++||+++++|++++|+++|++.++..++..+..++..++.+++.++++++++|...++++|++++++.+..++.+..++.
T Consensus 1001 ~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~ 1080 (1622)
T PLN03130 1001 MSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREV 1080 (1622)
T ss_pred HHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999888888888888888666666777666666667777788888
Q ss_pred HHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVL 160 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (479)
.+.....++++.+++.|+++|+++||+|+.++++.+.+.+..+...+..+.......|+.....++..+++.+++.+.+.
T Consensus 1081 ~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~ 1160 (1622)
T PLN03130 1081 KRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVM 1160 (1622)
T ss_pred HHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999888888887777666555566777666666555444433333222
Q ss_pred hCCcc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEE
Q 011713 161 LPGKH-----LPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIEL 235 (479)
Q Consensus 161 ~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~ 235 (479)
..+.. ..+.++.+++|...+..++..+...+..++..++|++|+.++++.|+|.+...+...++..||..|.|+|
T Consensus 1161 ~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f 1240 (1622)
T PLN03130 1161 QNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKF 1240 (1622)
T ss_pred cccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEE
Confidence 22211 1455666777777888888888888889999999999999999988765432122223335667789999
Q ss_pred EeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcC
Q 011713 236 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ 315 (479)
Q Consensus 236 ~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q 315 (479)
+||+|+|+++.++||+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|+|||+|+++++++++|++|++|||
T Consensus 1241 ~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQ 1320 (1622)
T PLN03130 1241 EDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQ 1320 (1622)
T ss_pred EEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECC
Confidence 99999998766679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeC
Q 011713 316 EPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDE 395 (479)
Q Consensus 316 ~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE 395 (479)
||+||+|||||||+++++++|+++++||+.|++++||+++|+||||+|||+|.+|||||||||||||||+++|+||||||
T Consensus 1321 dp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDE 1400 (1622)
T PLN03130 1321 APVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDE 1400 (1622)
T ss_pred CCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhcc-CchHHHHHHHHH
Q 011713 396 ATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKT-NSAFSKLVAEYR 469 (479)
Q Consensus 396 ~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~-~g~y~~l~~~~~ 469 (479)
|||+||++||+.|+++|++.+++||+|+||||++++++||||+||++|+|+|.|+|+||+++ +|.|++|+++..
T Consensus 1401 ATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1401 ATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999986 699999997643
No 9
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.3e-93 Score=824.77 Aligned_cols=469 Identities=41% Similarity=0.710 Sum_probs=402.4
Q ss_pred CCccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (479)
Q Consensus 1 ~~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
++||+++++|++++|+++|++.++..++..+..++..++.+++.+++++.+++...++++|+++++.++..++.+..++.
T Consensus 998 ~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 1077 (1495)
T PLN03232 998 MLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREV 1077 (1495)
T ss_pred eeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999888888888888887777777776665556666665555666677777778
Q ss_pred HHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVL 160 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (479)
.+.....++++.+++.|+++|+++||+|+.++++.+++.+..+...+..+.......|+...+..+..+++.+.+.+.+.
T Consensus 1078 ~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~ 1157 (1495)
T PLN03232 1078 RRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVL 1157 (1495)
T ss_pred HHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999998888888777776655544555666655544443333332222222
Q ss_pred hCCcc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEE
Q 011713 161 LPGKH-----LPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIEL 235 (479)
Q Consensus 161 ~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~ 235 (479)
..+.. ..+.++.++.|...+..++..+...+..++.++.|++|+.++++.|+|.+...+...++..||..+.|+|
T Consensus 1158 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f 1237 (1495)
T PLN03232 1158 RNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKF 1237 (1495)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEE
Confidence 22221 1344556677777888888888899999999999999999999987765421111222334666788999
Q ss_pred EeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcC
Q 011713 236 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ 315 (479)
Q Consensus 236 ~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q 315 (479)
+||+|+|+++.+++|+|+||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+|++++++++||++|++|||
T Consensus 1238 ~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQ 1317 (1495)
T PLN03232 1238 EDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQ 1317 (1495)
T ss_pred EEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECC
Confidence 99999997766679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeC
Q 011713 316 EPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDE 395 (479)
Q Consensus 316 ~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE 395 (479)
||+||+|||||||+++++++|+++++|++.|++++||+++|+||||+|||+|.+|||||||||||||||+++|+||||||
T Consensus 1318 dp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDE 1397 (1495)
T PLN03232 1318 SPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDE 1397 (1495)
T ss_pred CCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 99999999999999887899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccC-chHHHHHHHHH
Q 011713 396 ATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTN-SAFSKLVAEYR 469 (479)
Q Consensus 396 ~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~-g~y~~l~~~~~ 469 (479)
|||+||++||+.|+++|++.+++||+|+||||++++++||||+||++|+|+|.|+|+||++++ |.|++|++.+.
T Consensus 1398 ATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1398 ATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999976 59999997653
No 10
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=5e-92 Score=769.75 Aligned_cols=459 Identities=24% Similarity=0.344 Sum_probs=394.6
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
+||+++++|++++|++ |++.++.++...+...+..++.++++++++++++|+++++++.++++..++...+.+..++..
T Consensus 225 ~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~ 303 (686)
T TIGR03797 225 SFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKE 303 (686)
T ss_pred HHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999997 789998888877777777777777888889999999988776655555544444555445555
Q ss_pred HHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 011713 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI--V 159 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 159 (479)
+...+..++.++.+.|+++|+++||+++.|+++.++|.+..++..+...+......+.......+..+..+++.++. .
T Consensus 304 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~l 383 (686)
T TIGR03797 304 RRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISL 383 (686)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555667789999999999999999999999999999888887776666555555554444444333333322222 2
Q ss_pred HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEE
Q 011713 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (479)
Q Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vs 239 (479)
...|.++.|.+.++..+...+..|+..+...+..++++..+++|+.++++.++|.+. ....+ .+..+.|+|+||+
T Consensus 384 v~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~---~~~~~--~~~~~~I~~~nvs 458 (686)
T TIGR03797 384 LGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE---AKTDP--GKLSGAIEVDRVT 458 (686)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---CcCCC--CCCCceEEEEEEE
Confidence 245889999999999998999999999999999999999999999999987665321 11111 1234579999999
Q ss_pred EEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCcc
Q 011713 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (479)
Q Consensus 240 f~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~l 319 (479)
|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++++++|++|+||||||++
T Consensus 459 f~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l 538 (686)
T TIGR03797 459 FRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRL 538 (686)
T ss_pred EEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCcc
Confidence 99976667799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCC
Q 011713 320 FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATAS 399 (479)
Q Consensus 320 F~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSa 399 (479)
|+|||+|||+++.+++++++++||+.++++++|+++|+||||++||+|.+|||||||||+||||++++|+|||||||||+
T Consensus 539 f~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~ 618 (686)
T TIGR03797 539 MSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSA 618 (686)
T ss_pred CcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 99999999998756899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHH
Q 011713 400 IDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEY 468 (479)
Q Consensus 400 LD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~ 468 (479)
||+++|+.++++|++. ++|+|+||||+++++.||+|+||++|+|+|.|+|+||++++|.|+++++.|
T Consensus 619 LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~~q 685 (686)
T TIGR03797 619 LDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLARRQ 685 (686)
T ss_pred CCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHhc
Confidence 9999999999999986 689999999999999999999999999999999999999999999999864
No 11
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.1e-94 Score=778.76 Aligned_cols=470 Identities=23% Similarity=0.301 Sum_probs=385.4
Q ss_pred CCccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (479)
Q Consensus 1 ~~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
++|||.+..|++.+|+++|++.+++.+...+..++..+.++++.+++.|+..|++++++++..|+..+....+.+...+.
T Consensus 119 i~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~ 198 (1228)
T KOG0055|consen 119 IGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKL 198 (1228)
T ss_pred cceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999998777776665555555544444
Q ss_pred HHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 011713 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI-V 159 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 159 (479)
...+..+.++..+.+.|++.+++||.+|+.|++..++|.+.++...+...+.............++.........++. .
T Consensus 199 t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~ 278 (1228)
T KOG0055|consen 199 TEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGST 278 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444555666778899999999999999999999999999998888777655443332222222222222222222322 1
Q ss_pred -HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeE
Q 011713 160 -LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (479)
Q Consensus 160 -~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~v 238 (479)
+..+..++|.+...+.....-...+......+..+.++.+|+.+|++.++..+........... .....+.|+|+||
T Consensus 279 li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~--~~~~~g~ief~nV 356 (1228)
T KOG0055|consen 279 LILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRV--LSSIKGEIEFRNV 356 (1228)
T ss_pred HHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCc--ccccccceEEEEE
Confidence 1224444443322211111111122223334556778899999999999865443221111111 1124689999999
Q ss_pred EEEeCCCC-CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCC
Q 011713 239 KVRYRPNT-PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (479)
Q Consensus 239 sf~Y~~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~ 317 (479)
+|+||..+ .++|+|+||+|++||+|||||+|||||||+++||.|||+|++|+|+|||.|+++++.++||++||+|+|||
T Consensus 357 ~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QeP 436 (1228)
T KOG0055|consen 357 CFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEP 436 (1228)
T ss_pred EecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeech
Confidence 99998653 36999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCC
Q 011713 318 TLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEA 396 (479)
Q Consensus 318 ~lF~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~ 396 (479)
.||++||+|||.+++ +++++++.+||++|++++||.+||+||||.+||+|..|||||||||||||||++||+|||||||
T Consensus 437 vlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEa 516 (1228)
T KOG0055|consen 437 VLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEA 516 (1228)
T ss_pred hhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCc
Confidence 999999999999875 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHHHHhh
Q 011713 397 TASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEYRSSY 472 (479)
Q Consensus 397 TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~~~~~ 472 (479)
|||||+++|+.++++|++..+|||+|+|||||||+++||+|+||++|+|||.|+|+||++.+|.|.+|++.|+-..
T Consensus 517 TSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~~~~ 592 (1228)
T KOG0055|consen 517 TSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQELEK 592 (1228)
T ss_pred ccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999998899999999875433
No 12
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.1e-91 Score=813.54 Aligned_cols=470 Identities=34% Similarity=0.556 Sum_probs=413.1
Q ss_pred CCccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (479)
Q Consensus 1 ~~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
++||+++++|++++|+++|++.++..++..+..++..++.+++.++++++.+|.++++++|+.+++..+..++.+..++.
T Consensus 1046 ~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~ 1125 (1560)
T PTZ00243 1046 MSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREI 1125 (1560)
T ss_pred hhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999989999888888888888777666776666666777888888888
Q ss_pred HHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 011713 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIV- 159 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 159 (479)
.+......+++.+++.|+++|+++||+|+.++.+.+++.+..+...+..+.......|+..+..++..++..+++++.+
T Consensus 1126 ~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~ 1205 (1560)
T PTZ00243 1126 RRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVI 1205 (1560)
T ss_pred HHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999999999999988888877776777788887777766554333322221
Q ss_pred --Hh-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CCCCC-c----------------
Q 011713 160 --LL-PGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPP-EPPAI-I---------------- 218 (479)
Q Consensus 160 --~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~-e~~~~-~---------------- 218 (479)
.. .+..++|.++++++|+..+..++..+...+..++.++.|++|+.++++.++ |+... .
T Consensus 1206 ~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 1285 (1560)
T PTZ00243 1206 GTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADV 1285 (1560)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccccccccccc
Confidence 11 244678888888889888999999999999999999999999999996432 21000 0
Q ss_pred ------cCCCCC---CCCCCCccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCc
Q 011713 219 ------EETKPP---ASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 289 (479)
Q Consensus 219 ------~~~~~~---~~~~~~~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G 289 (479)
++..++ +.++..|.|+|+||+|+|+++.+++|+||||+|+|||+|||||+||||||||+++|+|+|+|++|
T Consensus 1286 ~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G 1365 (1560)
T PTZ00243 1286 TGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGG 1365 (1560)
T ss_pred ccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 000011 11234578999999999987767799999999999999999999999999999999999999999
Q ss_pred eEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCC
Q 011713 290 RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGEN 369 (479)
Q Consensus 290 ~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~ 369 (479)
+|+|||+|++++++++||++|++|||||+||+|||||||+++++++|+++++||++|++++||.++|+||||.|||+|.+
T Consensus 1366 ~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~n 1445 (1560)
T PTZ00243 1366 EIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSN 1445 (1560)
T ss_pred EEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCc
Confidence 99999999999999999999999999999999999999998778999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEe
Q 011713 370 WSVGQRQLFCLGRVLLKR-NRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEY 448 (479)
Q Consensus 370 LSgGQrQRlaiARAll~~-p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~ 448 (479)
|||||||||||||||+++ |+|||||||||+||++||+.|+++|++.++++|+|+||||++++++||+|+||++|+|+|.
T Consensus 1446 LSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~ 1525 (1560)
T PTZ00243 1446 YSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEM 1525 (1560)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999996 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhc-cCchHHHHHHHHHH
Q 011713 449 DLPSNLMK-TNSAFSKLVAEYRS 470 (479)
Q Consensus 449 G~~~eLl~-~~g~y~~l~~~~~~ 470 (479)
|+|+||++ ++|.|++|++..-+
T Consensus 1526 Gt~~eLl~~~~~~f~~l~~~~~~ 1548 (1560)
T PTZ00243 1526 GSPRELVMNRQSIFHSMVEALGR 1548 (1560)
T ss_pred CCHHHHHhCCCCHHHHHHHHhCh
Confidence 99999998 58999999987543
No 13
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-93 Score=698.74 Aligned_cols=460 Identities=22% Similarity=0.368 Sum_probs=374.4
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHhHHHHHHHHHHHHHHH----HHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVM-ASVTWPVLIVAIPTVIVAKYI----QGYYLSS 76 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~~~~~~~~~~~~----~~~~~~~ 76 (479)
.|+-++++|+++.-+....+.+. ++...+.++...++.+.++.+.. ..++|++.++++..+.+++.+ ..+-.+.
T Consensus 308 rwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~ 386 (790)
T KOG0056|consen 308 RWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKA 386 (790)
T ss_pred eeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHH
Confidence 57888999999988776666554 33433444444444444443332 347899988877777666543 2222222
Q ss_pred HHHHHHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 77 ARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAAL 156 (479)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (479)
.|++.....+.+ +.-.+++-+.+|+|-||+|++..++|.+...++++..++.......+...-+.+..+...+..+
T Consensus 387 rR~Mn~~~nesr----Ar~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsl 462 (790)
T KOG0056|consen 387 RRKMNNSWNESR----ARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSL 462 (790)
T ss_pred HHHhhhhhhhhh----hhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhh
Confidence 333332222222 3456899999999999999999999999999998887766554443333222222222222111
Q ss_pred HHHH--hCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEE
Q 011713 157 LIVL--LPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIE 234 (479)
Q Consensus 157 ~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~ 234 (479)
+.++ ..+..++|.+..+.+|..++..|+.+++..+..+|++...+|+++++++.++|-.. .+..++ -....|.|+
T Consensus 463 l~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd--~P~a~p-l~~~~G~i~ 539 (790)
T KOG0056|consen 463 LCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVD--LPGAPP-LKVTQGKIE 539 (790)
T ss_pred eeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhc--CCCCCC-ccccCCeEE
Confidence 1111 13678899999999999999999999999999999999999999999986554321 111111 112468899
Q ss_pred EEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEc
Q 011713 235 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP 314 (479)
Q Consensus 235 ~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~ 314 (479)
|+||+|.|++. +|+|+||||+++||+++|+|||||+||||++++|.||||.++|.|.|||+||+.+...++|++||+||
T Consensus 540 fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVP 618 (790)
T KOG0056|consen 540 FSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVP 618 (790)
T ss_pred EEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCccc
Confidence 99999999876 46999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEE
Q 011713 315 QEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILIL 393 (479)
Q Consensus 315 Q~~~lF~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliL 393 (479)
||..||++||..||.+++ .+++||+.+|++.|++||-|..+|+||+|+|||+|-+||||||||+||||++||+|.|++|
T Consensus 619 QDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlL 698 (790)
T KOG0056|consen 619 QDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILL 698 (790)
T ss_pred CcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEE
Confidence 999999999999999874 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhcc-CchHHHHHHHHHH
Q 011713 394 DEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKT-NSAFSKLVAEYRS 470 (479)
Q Consensus 394 DE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~-~g~y~~l~~~~~~ 470 (479)
||||||||..||+.|+.++.++..+||.|+|||||||+-+||.|+|+++|+|+|.|+|+||+++ +|.|++||+.|+.
T Consensus 699 DEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa 776 (790)
T KOG0056|consen 699 DEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQQA 776 (790)
T ss_pred cchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999996 8999999986654
No 14
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=7.3e-91 Score=760.75 Aligned_cols=458 Identities=26% Similarity=0.377 Sum_probs=391.5
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
+||+++++|++++|+++|++.++..+...+..++..++.+++.+++++.++|+++++++..+++..++...+.+..++..
T Consensus 250 ~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~ 329 (711)
T TIGR00958 250 GFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLS 329 (711)
T ss_pred HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999998998999999999999999999999988776666666666666666666666
Q ss_pred HHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 011713 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 159 (479)
+...+..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..............+..+..+++..+ ..
T Consensus 330 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~l 409 (711)
T TIGR00958 330 EELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQL 409 (711)
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777788999999999999999999999999999988877666544433322222222222222222211111 12
Q ss_pred HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEE
Q 011713 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (479)
Q Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vs 239 (479)
...|.++.|.+.+++.|...+..++..+...+..++++..+.+|+.++++.+++.+.. .... ..+..+.|+|+||+
T Consensus 410 v~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~~~~--~~~~~~~I~~~nVs 485 (711)
T TIGR00958 410 VLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT--GTLA--PLNLEGLIEFQDVS 485 (711)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--CCCC--CCCCCCeEEEEEEE
Confidence 3458899999999999999999999999999999999999999999999876543211 1111 11234679999999
Q ss_pred EEeCCC-CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCc
Q 011713 240 VRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (479)
Q Consensus 240 f~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~ 318 (479)
|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||+
T Consensus 486 f~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~ 565 (711)
T TIGR00958 486 FSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPV 565 (711)
T ss_pred EECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCcc
Confidence 999753 3579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHhhcCCC-CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 011713 319 LFRGSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (479)
Q Consensus 319 lF~gTi~eNi~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~T 397 (479)
+|+|||||||+++ +++++|++++|++.+++++||+++|+||||.+||+|.+||||||||||||||++++|+||||||||
T Consensus 566 lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpT 645 (711)
T TIGR00958 566 LFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEAT 645 (711)
T ss_pred ccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccc
Confidence 9999999999976 468899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHH
Q 011713 398 ASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLV 465 (479)
Q Consensus 398 SaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~ 465 (479)
|+||+++|+.+++ ....+++|+|+||||+++++.||+|+||++|+|+|+|+|+||++++|.|++|+
T Consensus 646 SaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~lv 711 (711)
T TIGR00958 646 SALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHLV 711 (711)
T ss_pred cccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhcC
Confidence 9999999999998 33457899999999999999999999999999999999999999999999863
No 15
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=8.8e-91 Score=763.14 Aligned_cols=461 Identities=23% Similarity=0.311 Sum_probs=396.1
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
+||+++++|++++|+++| +.++.++...+..++..++.++++++++++++|+++++++.++++..++..++.+..++..
T Consensus 243 ~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~ 321 (710)
T TIGR03796 243 RFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDAN 321 (710)
T ss_pred HHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999988 6788888888888888888888889999999999988877666666665555666555555
Q ss_pred HHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 011713 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI--V 159 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 159 (479)
+......++.++.+.|.++|+++||+++.|+.+.++|.+...+..+...+......+......++..+..+++.++. .
T Consensus 322 ~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~ 401 (710)
T TIGR03796 322 RRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLR 401 (710)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677889999999999999999999999999998887777766555555444444444444433333222221 2
Q ss_pred HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccC--C-CCCCCCCCCccEEEE
Q 011713 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEE--T-KPPASWPSHGRIELE 236 (479)
Q Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~--~-~~~~~~~~~~~I~~~ 236 (479)
...|.+++|.+.++..+...+..|+..+...+..++++..+++|+.++++.++|.+..... . .....++..+.|+|+
T Consensus 402 v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~ 481 (710)
T TIGR03796 402 VMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELR 481 (710)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEE
Confidence 2458899999999999999999999999999999999999999999999887654321100 0 000001234679999
Q ss_pred eEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCC
Q 011713 237 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQE 316 (479)
Q Consensus 237 ~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~ 316 (479)
||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+|||||
T Consensus 482 ~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 561 (710)
T TIGR03796 482 NITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQD 561 (710)
T ss_pred EEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecC
Confidence 99999987666799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeC
Q 011713 317 PTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDE 395 (479)
Q Consensus 317 ~~lF~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE 395 (479)
|++|+|||||||+++. +++++++++||+.++++++|.++|+||||++||+|.+|||||||||+||||++++|+||||||
T Consensus 562 ~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDE 641 (710)
T TIGR03796 562 IFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDE 641 (710)
T ss_pred ChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEEC
Confidence 9999999999998764 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHH
Q 011713 396 ATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLV 465 (479)
Q Consensus 396 ~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~ 465 (479)
|||+||++||+.+.+.+++ .++|+|+||||+++++.||+|+||++|+|+|.|+|+||++++|.|++++
T Consensus 642 ptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 642 ATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709 (710)
T ss_pred ccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcHHHHh
Confidence 9999999999999999987 5899999999999999999999999999999999999999999999987
No 16
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=9.1e-91 Score=762.34 Aligned_cols=459 Identities=22% Similarity=0.293 Sum_probs=391.8
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
.||+++++|++++|++ |++.+..++...+...+..++.++++++++++++|+++++++..+++..++...+.+..++..
T Consensus 245 ~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~ 323 (708)
T TIGR01193 245 SFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLN 323 (708)
T ss_pred HHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999998 888888887777777777777777888888999999988776666666555556666666666
Q ss_pred HHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 011713 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 159 (479)
+......++..+.+.|+++|+++||++|.|+.+.++|.+......+...+......+......++..+..++++++ ..
T Consensus 324 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~l 403 (708)
T TIGR01193 324 HDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYL 403 (708)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777888999999999999999999999999999888777666655444333333322222222222222222 22
Q ss_pred HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEE
Q 011713 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (479)
Q Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vs 239 (479)
...|.+++|.+.++..+...+..|+..+...+..++.+..+++|+.++++.++|.+... .....++..+.|+|+||+
T Consensus 404 v~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~---~~~~~~~~~~~I~~~~vs 480 (708)
T TIGR01193 404 VMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKK---KRTELNNLNGDIVINDVS 480 (708)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc---cccCCCCCCCcEEEEEEE
Confidence 24588999999999999999999999999999999999999999999998876543211 001111235679999999
Q ss_pred EEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCcc
Q 011713 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (479)
Q Consensus 240 f~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~l 319 (479)
|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||+|
T Consensus 481 f~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l 559 (708)
T TIGR01193 481 YSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYI 559 (708)
T ss_pred EEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCcee
Confidence 999744 5699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCC--CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 011713 320 FRGSVRTNLDPL--GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (479)
Q Consensus 320 F~gTi~eNi~~~--~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~T 397 (479)
|+|||+|||+++ ++++++++++||+.+++++||+++|+||||++||+|.+|||||||||+||||++++|+||||||||
T Consensus 560 f~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~T 639 (708)
T TIGR01193 560 FSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDEST 639 (708)
T ss_pred hhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCcc
Confidence 999999999986 468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHH
Q 011713 398 ASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVA 466 (479)
Q Consensus 398 SaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~ 466 (479)
|+||+++|+.+++.|++. +++|+|+||||+++++.||+|+||++|+++|.|+|+||++++|.|+++|+
T Consensus 640 s~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 640 SNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred ccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence 999999999999999985 78999999999999999999999999999999999999999999999975
No 17
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-90 Score=699.83 Aligned_cols=461 Identities=22% Similarity=0.315 Sum_probs=396.5
Q ss_pred ccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 011713 3 FFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIV---AIPTVIVAKYIQGYYLSSARE 79 (479)
Q Consensus 3 ~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~---~~~~~~~~~~~~~~~~~~~~~ 79 (479)
|-.+.++|++.+.++..++.++.++..+++++..+.+.++..++.+++++|..+++ +.|++|+++++ .....+.
T Consensus 90 ~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil---vg~~a~~ 166 (559)
T COG4988 90 FIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL---VGLAAKD 166 (559)
T ss_pred hhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHhH
Confidence 44567899999999999999999999999999999999999999999999997765 45666666554 3334445
Q ss_pred HHHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 011713 80 LMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL-- 157 (479)
Q Consensus 80 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 157 (479)
..+.+......+.+++.|.++|+.|+|.|++.+...++..+...++.+..+..-+........++++..+.+.+++++
T Consensus 167 ~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g 246 (559)
T COG4988 167 ASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIG 246 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566677889999999999999999999999888888877777766655554444445556666666555544443
Q ss_pred HHHhC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEE
Q 011713 158 IVLLP-GKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELE 236 (479)
Q Consensus 158 ~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~ 236 (479)
.-++. |.++......++..+.-++.|+..++..++.-.++.++.+++..+++.|.+.+.... .....+....+|+++
T Consensus 247 ~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~--~~~~~~~~~~ei~~~ 324 (559)
T COG4988 247 FRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGE--KAEVANEPPIEISLE 324 (559)
T ss_pred HHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcc--ccccccCCCceeeec
Confidence 22344 567666555666777889999999999999999999999999999998765432111 111111122346666
Q ss_pred eEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCC
Q 011713 237 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQE 316 (479)
Q Consensus 237 ~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~ 316 (479)
|++|+|++.+ ++++|+||+++||+++||||+||||||||+++|+|+++|++|+|.+||+|+++++.++||+++++|||+
T Consensus 325 ~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~ 403 (559)
T COG4988 325 NLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQN 403 (559)
T ss_pred ceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCC
Confidence 9999998765 699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeC
Q 011713 317 PTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDE 395 (479)
Q Consensus 317 ~~lF~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE 395 (479)
|+||+|||||||.+++ +++||++++|++.+++.+|+.. |+|+||++||+|.+|||||+||+++||||+++++++||||
T Consensus 404 p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDE 482 (559)
T COG4988 404 PYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDE 482 (559)
T ss_pred CccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 9999999999999875 6899999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHHHH
Q 011713 396 ATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEYRS 470 (479)
Q Consensus 396 ~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~~~ 470 (479)
|||+||.+||+.|+++|.++.+++|+|+||||+..+++||+|+|||+|+++|+|+|++|++++|.|++|+++|++
T Consensus 483 pTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q~~ 557 (559)
T COG4988 483 PTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557 (559)
T ss_pred CccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876
No 18
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.5e-90 Score=739.46 Aligned_cols=461 Identities=20% Similarity=0.276 Sum_probs=388.4
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAK-YIQGYYLSSAREL 80 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~~~ 80 (479)
+||+++++|++++|+++|++.++.++.+.++.++.+++.+++.++++++++|+++++++.++++.. .+..++.+..++.
T Consensus 109 ~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 188 (574)
T PRK11160 109 AGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKP 188 (574)
T ss_pred HhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 578999999999999999999999999999999999999999999999999999886644433332 2333444444455
Q ss_pred HHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 011713 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI-V 159 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 159 (479)
.+...+..+++++.+.|.++|+++||+|+.|+++.+++.+..++..+...+......+......++..+..+++.++. .
T Consensus 189 ~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 268 (574)
T PRK11160 189 GQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAG 268 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566777889999999999999999999999999999888877776665555444444444443333332222221 1
Q ss_pred HhCCcccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeE
Q 011713 160 LLPGKHLPGFVGLSLSYALT-LSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (479)
Q Consensus 160 ~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~v 238 (479)
...|.++.|.+.+++.|... ...++..+...+..++++..+++|+.++++.+++.+.. ..... .+..+.|+|+||
T Consensus 269 ~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~--~~~~~--~~~~~~i~~~~v 344 (574)
T PRK11160 269 GVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFP--TTSTA--AADQVSLTLNNV 344 (574)
T ss_pred HhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--cccCC--CCCCCeEEEEEE
Confidence 23577788877776666533 34566777788889999999999999999876542211 01111 123457999999
Q ss_pred EEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCc
Q 011713 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (479)
Q Consensus 239 sf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~ 318 (479)
+|+|+++.+++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||+
T Consensus 345 ~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 424 (574)
T PRK11160 345 SFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVH 424 (574)
T ss_pred EEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccch
Confidence 99998655579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 011713 319 LFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (479)
Q Consensus 319 lF~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~T 397 (479)
+|++||+|||+++. +++++++++|++.+++++|+++ |+||||++||+|.+|||||||||+||||++++|+||||||||
T Consensus 425 lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~t 503 (574)
T PRK11160 425 LFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPT 503 (574)
T ss_pred hhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 99999999998764 6899999999999999999999 999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHH
Q 011713 398 ASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAE 467 (479)
Q Consensus 398 SaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~ 467 (479)
|+||+++|+.+++.+++..+++|+|+||||+++++.||+|++|++|+++|.|+|+||++++|.|+++|+.
T Consensus 504 s~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g~y~~l~~~ 573 (574)
T PRK11160 504 EGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQR 573 (574)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcCcHHHHHHhh
Confidence 9999999999999999998899999999999999999999999999999999999999999999999864
No 19
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=3.4e-90 Score=743.34 Aligned_cols=463 Identities=22% Similarity=0.312 Sum_probs=400.3
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
++|++.++|++++|+++|++.++..+...+..++..++.++++++++++++|+++++++.++++..++..++.+..++..
T Consensus 114 ~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~ 193 (582)
T PRK11176 114 SFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNIS 193 (582)
T ss_pred HHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999998888888999999999999999999999988776666655555555555555555
Q ss_pred HHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 011713 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 159 (479)
+......+++.+.+.|.++|+++||+|+.++.+.++|.+..+...+...+......+......++..+..+++.++ ..
T Consensus 194 ~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 273 (582)
T PRK11176 194 KNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFP 273 (582)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677788899999999999999999999999999988888777665555444444444444333332222222 12
Q ss_pred HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEE
Q 011713 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (479)
Q Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vs 239 (479)
...|.+++|.+.+++.+...+..|+..+...+..++.+..+++|+.++++.+++.+.. .... .+..+.|+|+||+
T Consensus 274 ~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~--~~~~---~~~~~~i~~~~vs 348 (582)
T PRK11176 274 SVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG--KRVI---ERAKGDIEFRNVT 348 (582)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC--CcCC---CCCCCeEEEEEEE
Confidence 2458899999988888888888999999999999999999999999999876543211 1111 1234579999999
Q ss_pred EEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCcc
Q 011713 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (479)
Q Consensus 240 f~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~l 319 (479)
|+|++..+++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||++
T Consensus 349 f~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l 428 (582)
T PRK11176 349 FTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHL 428 (582)
T ss_pred EecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCcee
Confidence 99987656799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCCC--CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 011713 320 FRGSVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (479)
Q Consensus 320 F~gTi~eNi~~~~--~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~T 397 (479)
|+|||+|||+++. ++++++++++++.+++++|++++|+||||++||+|.+|||||||||+||||++++|+||||||||
T Consensus 429 f~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEpt 508 (582)
T PRK11176 429 FNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT 508 (582)
T ss_pred ecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 9999999999763 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHHH
Q 011713 398 ASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEYR 469 (479)
Q Consensus 398 SaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~~ 469 (479)
|+||++||+.+.+.|.+..+++|+|+||||+++++.||+|++|++|+|+|.|+|++|+++++.|+++++.+.
T Consensus 509 saLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~~~~~ 580 (582)
T PRK11176 509 SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLHKMQF 580 (582)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChHHHHHHHHh
Confidence 999999999999999998889999999999999999999999999999999999999999999999998764
No 20
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.7e-90 Score=797.86 Aligned_cols=467 Identities=24% Similarity=0.286 Sum_probs=377.4
Q ss_pred Ccccc--CCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH--H
Q 011713 2 LFFDS--TPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSS--A 77 (479)
Q Consensus 2 ~~f~~--~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~--~ 77 (479)
+||++ +++|++++|+++|++.++..+...+..++..++.+++.++++++++|.++++++|++++.........+. .
T Consensus 915 ~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 994 (1466)
T PTZ00265 915 SFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTAN 994 (1466)
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58985 8899999999999999999998888888999999999889999999999887766554433222111111 1
Q ss_pred HHHHHH-------------hhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 78 RELMRM-------------NGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIE 144 (479)
Q Consensus 78 ~~~~~~-------------~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (479)
++..+. ..+..+.....+.|+++|+++||+|+.|+++.++|.+..+...+...+......+...+..
T Consensus 995 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1074 (1466)
T PTZ00265 995 KDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQ 1074 (1466)
T ss_pred HHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 1112345678899999999999999999999999998887776655544443333333333
Q ss_pred HHHHHHHHHHHHHH--HHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCC
Q 011713 145 TLQNLIILTAALLI--VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETK 222 (479)
Q Consensus 145 ~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~ 222 (479)
++..+..++++++. ....|.+++|.+..++.+......+...+...+..++++.++++|++++++.+++.+.......
T Consensus 1075 ~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~ 1154 (1466)
T PTZ00265 1075 SAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGI 1154 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCccc
Confidence 33333333222222 2235888898877766554433345566777888999999999999999987653221111111
Q ss_pred CC-CCCCCCccEEEEeEEEEeCCC-CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC--------------
Q 011713 223 PP-ASWPSHGRIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-------------- 286 (479)
Q Consensus 223 ~~-~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-------------- 286 (479)
.. ......+.|+|+||+|+|++. ..+||+|+||+|+||+++|||||||||||||++||+|||+|
T Consensus 1155 ~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~ 1234 (1466)
T PTZ00265 1155 RIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTN 1234 (1466)
T ss_pred ccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccc
Confidence 00 011234679999999999753 34699999999999999999999999999999999999999
Q ss_pred ----------------------------------------CCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHh
Q 011713 287 ----------------------------------------ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326 (479)
Q Consensus 287 ----------------------------------------~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~e 326 (479)
++|+|++||+|+++++.++||++||||||||+||+|||||
T Consensus 1235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIre 1314 (1466)
T PTZ00265 1235 DMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYE 1314 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHH
Confidence 6999999999999999999999999999999999999999
Q ss_pred hcCCC-CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHH
Q 011713 327 NLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATD 405 (479)
Q Consensus 327 Ni~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te 405 (479)
||+++ +++++|++++||+.|++++||.+||+||||.|||+|.+|||||||||||||||+++|+||||||||||||+++|
T Consensus 1315 NI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE 1394 (1466)
T PTZ00265 1315 NIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSE 1394 (1466)
T ss_pred HHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 99987 46899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHC--CCcEEEEEccCchhhhcCCEEEEEeC----CEEE-EecChhhhhc-cCchHHHHHHHH
Q 011713 406 AILQRIIREEF--PGSTVITIAHRVPTITDSDMVMVLSY----GELV-EYDLPSNLMK-TNSAFSKLVAEY 468 (479)
Q Consensus 406 ~~i~~~l~~~~--~~~TvI~IaHrl~~i~~~D~I~vl~~----G~Iv-e~G~~~eLl~-~~g~y~~l~~~~ 468 (479)
+.|+++|.+.. +++|+|+||||++++++||+|+||++ |+++ |+|+|+||++ ++|.|++||+.+
T Consensus 1395 ~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1395 KLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred HHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 99999999984 69999999999999999999999999 9955 8999999998 699999999865
No 21
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.9e-89 Score=738.38 Aligned_cols=464 Identities=26% Similarity=0.357 Sum_probs=389.6
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
+||+++++|++++|+++|++.++..+...+..++..++.+++.++++++++|+++++++..+++..++...+.+..+...
T Consensus 114 ~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~ 193 (592)
T PRK10790 114 SAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIV 193 (592)
T ss_pred HHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999998888888888888888889999999887654444433333333333334444
Q ss_pred HHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHH
Q 011713 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWL-VLRIETLQNLIILTA-ALLIV 159 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~ 159 (479)
+......++..+.+.|.++|+++||+|+.++.+.+++.+..++..+...+......+. .....++..+...++ .+...
T Consensus 194 ~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (592)
T PRK10790 194 RRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF 273 (592)
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444456677889999999999999999999999998887766555444333322221 111222222211111 11122
Q ss_pred HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEE
Q 011713 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (479)
Q Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vs 239 (479)
...|.++.|.+.+++.|...+..|+..+...+..++++..+++|+.++++.++++.. .... +...+.|+|+||+
T Consensus 274 ~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~~~---~~~~~~i~~~~v~ 347 (592)
T PRK10790 274 SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---NDDR---PLQSGRIDIDNVS 347 (592)
T ss_pred HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---CCcc---CCCCCeEEEEEEE
Confidence 345888999999999999999999999999999999999999999999986544211 1111 1224579999999
Q ss_pred EEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCcc
Q 011713 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (479)
Q Consensus 240 f~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~l 319 (479)
|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++++++|++|+||||||++
T Consensus 348 f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~l 426 (592)
T PRK10790 348 FAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVV 426 (592)
T ss_pred EEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCcc
Confidence 999754 5699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCC
Q 011713 320 FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATAS 399 (479)
Q Consensus 320 F~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSa 399 (479)
|+|||+|||+++.+++++++++||+++|++++|+++|+||||.+||+|.+|||||||||+||||++++|||||||||||+
T Consensus 427 F~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~ 506 (592)
T PRK10790 427 LADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATAN 506 (592)
T ss_pred ccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCccc
Confidence 99999999998778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHHHHhh
Q 011713 400 IDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEYRSSY 472 (479)
Q Consensus 400 LD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~~~~~ 472 (479)
||++||+.|.+.|++..++||+|+||||+++++.||+|++|++|+|++.|+|+||+++++.|+++++.+..+.
T Consensus 507 LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~l~~~~~~~~ 579 (592)
T PRK10790 507 IDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQLAGE 579 (592)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHHHHHHHHHhhhc
Confidence 9999999999999998889999999999999999999999999999999999999999999999999775543
No 22
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=6.6e-90 Score=798.32 Aligned_cols=469 Identities=29% Similarity=0.512 Sum_probs=413.4
Q ss_pred CCccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (479)
Q Consensus 1 ~~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
++||+++++|++++|+++|++.++..++..+..++..++.+++.++++++++|+++++++|++++++++.+++.+..++.
T Consensus 973 ~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l 1052 (1490)
T TIGR01271 973 MAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQL 1052 (1490)
T ss_pred HHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999988877887777777788888888888
Q ss_pred HHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVL 160 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (479)
.+.....++++.+++.|+++|+.+||+|++++++.+++.+..+...+..+.......|+..++.++..+..++++++.+
T Consensus 1053 ~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~- 1131 (1490)
T TIGR01271 1053 KQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAI- 1131 (1490)
T ss_pred HHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 8888888999999999999999999999999999999999888776666666666778777666654443332222221
Q ss_pred hCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccC--------------CCCCCC
Q 011713 161 LPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEE--------------TKPPAS 226 (479)
Q Consensus 161 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~--------------~~~~~~ 226 (479)
.......|.++.+++|+..+..++..+...+..++..+.|++|+.++++.|+|.+...+. ..+++.
T Consensus 1132 ~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1211 (1490)
T TIGR01271 1132 GTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKC 1211 (1490)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCC
Confidence 112345566777777888888888888888889999999999999999887664321110 112234
Q ss_pred CCCCccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHH
Q 011713 227 WPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL 306 (479)
Q Consensus 227 ~~~~~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~l 306 (479)
||..|.|+|+||+|+|+++.+++|+||||+|+|||+|||||+||||||||+++|+|+|+ ++|+|+|||+|+++++++++
T Consensus 1212 wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271 1212 WPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred CCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHH
Confidence 67778999999999998766789999999999999999999999999999999999997 79999999999999999999
Q ss_pred hccceEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc
Q 011713 307 RTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (479)
Q Consensus 307 r~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~ 386 (479)
|++|+||||||+||+||||+||+++.+++|+++|+||+.++++++|.++|+||||+|||+|.+|||||||||||||||++
T Consensus 1291 R~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr 1370 (1490)
T TIGR01271 1291 RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS 1370 (1490)
T ss_pred HhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999877889999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHH
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVA 466 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~ 466 (479)
+|+|||||||||+||++||+.|++.|++.+++||+|+||||++++.+||||+||++|+|+|.|+|++|+++++.|++|++
T Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~ 1450 (1490)
T TIGR01271 1371 KAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMS 1450 (1490)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHh
Q 011713 467 EYRSS 471 (479)
Q Consensus 467 ~~~~~ 471 (479)
+..+.
T Consensus 1451 ~~~~~ 1455 (1490)
T TIGR01271 1451 AADRL 1455 (1490)
T ss_pred HhChh
Confidence 65443
No 23
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-90 Score=685.68 Aligned_cols=457 Identities=21% Similarity=0.325 Sum_probs=382.4
Q ss_pred ccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 011713 5 DSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPT-VIVAKYIQGYYLSSARELMRM 83 (479)
Q Consensus 5 ~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~-~~~~~~~~~~~~~~~~~~~~~ 83 (479)
.+.++||+++|++.|++.++..+-..+.+++.+++...+..+.+.+++|++++.+... +++...++..+.+..+...+.
T Consensus 110 ~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~ 189 (573)
T COG4987 110 LRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAH 189 (573)
T ss_pred HhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 4568999999999999999999999999999988888888888888999987654333 333334444555555555555
Q ss_pred hhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hC
Q 011713 84 NGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVL-LP 162 (479)
Q Consensus 84 ~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 162 (479)
....++.+.+++.|.++|..+.+.||+++.+.+.+.+..+...+...+......|......++..+++....++... ..
T Consensus 190 l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~ 269 (573)
T COG4987 190 LAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVG 269 (573)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 66677888999999999999999999999999999888888877777777777777666555555444322222211 11
Q ss_pred -CcccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEEE
Q 011713 163 -GKHLPGFVGLSLSYALTLSSIQVIMT-RWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKV 240 (479)
Q Consensus 163 -~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vsf 240 (479)
|..+.....+++...+....++..+. ..+..+.+...|+.|+.++.+.+++.... ....+. ....++++||||
T Consensus 270 ~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~---~~~~~~--~~~~l~~~~vsF 344 (573)
T COG4987 270 AGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP---DEQTAT--TGQALELRNVSF 344 (573)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC---ccccCC--ccceeeecccee
Confidence 44442222233333234444444444 66678889999999999999877664321 111111 111699999999
Q ss_pred EeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccc
Q 011713 241 RYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF 320 (479)
Q Consensus 241 ~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF 320 (479)
+|+++.+++|+|+||++++||+|||+|+||||||||+++|.|.|+|++|+|.++|.+++.++.+.+|+.|++++|.++||
T Consensus 345 ~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF 424 (573)
T COG4987 345 TYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLF 424 (573)
T ss_pred ecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHH
Confidence 99988888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHhhcCCC-CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCC
Q 011713 321 RGSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATAS 399 (479)
Q Consensus 321 ~gTi~eNi~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSa 399 (479)
+||+||||... +++|||++|+|++++||++++++.|+||+|++||+|.+|||||||||||||+||+|+|++||||||.+
T Consensus 425 ~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTeg 504 (573)
T COG4987 425 SGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEG 504 (573)
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCccc
Confidence 99999999875 47999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHH
Q 011713 400 IDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVA 466 (479)
Q Consensus 400 LD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~ 466 (479)
||++||+++++.+.+..++||+|+||||+..++.||||+|||+|+|+|+|+|++|++++|.|+++++
T Consensus 505 LD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~q 571 (573)
T COG4987 505 LDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQ 571 (573)
T ss_pred CChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999986
No 24
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=6.2e-89 Score=746.32 Aligned_cols=449 Identities=22% Similarity=0.329 Sum_probs=386.0
Q ss_pred ccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011713 5 DSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMN 84 (479)
Q Consensus 5 ~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (479)
+++++|++++|+ +|++.++.++...+...+..++.++++++++++++|+++++++..+++...+...+.+..++..+..
T Consensus 238 ~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~ 316 (694)
T TIGR03375 238 RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEES 316 (694)
T ss_pred CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999 7999999988877777777777787888889999999988776666655555555666556666666
Q ss_pred hhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhC
Q 011713 85 GTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IVLLP 162 (479)
Q Consensus 85 ~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 162 (479)
.+..++..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+......+.......+..+..+++.++ .....
T Consensus 317 ~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~ 396 (694)
T TIGR03375 317 MRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISD 396 (694)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6677888999999999999999999999999999988887777666555544444433333333322222222 12245
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEEEEe
Q 011713 163 GKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRY 242 (479)
Q Consensus 163 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y 242 (479)
|.+++|.+.++..+...+..|+..+...+..++.+..+++|+.++++.++|.+.. .. .....+..+.|+|+||+|+|
T Consensus 397 g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~--~~-~~~~~~~~~~I~~~~vsf~Y 473 (694)
T TIGR03375 397 GELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG--TR-FLHRPRLQGEIEFRNVSFAY 473 (694)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--CC-CCCCCCccceEEEEEEEEEe
Confidence 8899999999999999999999999999999999999999999999987653321 11 01111234679999999999
Q ss_pred CCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccc
Q 011713 243 RPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG 322 (479)
Q Consensus 243 ~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~g 322 (479)
+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|+|
T Consensus 474 ~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~ 553 (694)
T TIGR03375 474 PGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG 553 (694)
T ss_pred CCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhh
Confidence 86666799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCC
Q 011713 323 SVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASID 401 (479)
Q Consensus 323 Ti~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD 401 (479)
||+|||+++. +++++++++|++.++++++|+++|+||||.+||+|.+|||||||||+||||++++|+|||||||||+||
T Consensus 554 TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD 633 (694)
T TIGR03375 554 TLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD 633 (694)
T ss_pred hHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 9999999875 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhcc
Q 011713 402 SATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 402 ~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
+++|+.|++.|.+..+++|+|+||||+++++.||+|+||++|+|+|.|+|+||+++
T Consensus 634 ~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 634 NRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999899999999999999999999999999999999999999864
No 25
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.1e-87 Score=736.14 Aligned_cols=462 Identities=25% Similarity=0.365 Sum_probs=396.8
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
+||+++++|++++|+ +|++.++.++...+..++..++.++++++++++++|+++++++..+++...+..++.+..++..
T Consensus 228 ~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~ 306 (694)
T TIGR01846 228 GYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRV 306 (694)
T ss_pred HHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999 6999999988877777777777777778889999999988776655555554444544444444
Q ss_pred HHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 011713 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI--V 159 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 159 (479)
+...+..++.++.+.|+++|+++||++|.|+.+.++|.+..++..+...+......+......++..+..+++.++. .
T Consensus 307 ~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~l 386 (694)
T TIGR01846 307 EDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHL 386 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55555667888999999999999999999999999999888887776666555555444444444333333222221 2
Q ss_pred HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEE
Q 011713 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (479)
Q Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vs 239 (479)
...|.++.|.+.++.++...+..|+..+...+..++++..+++|+.++++.+++.+.. .... .....+.|+|+||+
T Consensus 387 v~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~~~--~~~~~~~i~~~~vs 462 (694)
T TIGR01846 387 VIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA--GLAA--LPELRGAITFENIR 462 (694)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CCCC--CCCCCCeEEEEEEE
Confidence 2458899999999999999999999999999999999999999999999877653211 1011 11234679999999
Q ss_pred EEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCcc
Q 011713 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (479)
Q Consensus 240 f~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~l 319 (479)
|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||+|++
T Consensus 463 f~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~l 542 (694)
T TIGR01846 463 FRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVL 542 (694)
T ss_pred EEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCee
Confidence 99986666799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCC-CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 011713 320 FRGSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA 398 (479)
Q Consensus 320 F~gTi~eNi~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TS 398 (479)
|+|||+|||+++ ++++++++++||+.++++++++++|+||||.+||+|.+|||||||||+||||++++|+|||||||||
T Consensus 543 f~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts 622 (694)
T TIGR01846 543 FSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATS 622 (694)
T ss_pred hhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 999999999875 4689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHH
Q 011713 399 SIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEY 468 (479)
Q Consensus 399 aLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~ 468 (479)
+||+++|+.+.+.|++..+++|+|+||||+++++.||+|++|++|+|++.|+|+||++++|.|+++++.+
T Consensus 623 ~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 692 (694)
T TIGR01846 623 ALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQQQ 692 (694)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHHHHHHhh
Confidence 9999999999999999888999999999999999999999999999999999999999999999999865
No 26
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.8e-87 Score=721.14 Aligned_cols=462 Identities=24% Similarity=0.379 Sum_probs=405.3
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
++|++.++|++++|+++|++.++.++...+..++..++.++++++++++++|++++++++++++..++..++.+..++..
T Consensus 103 ~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~ 182 (571)
T TIGR02203 103 SFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRIS 182 (571)
T ss_pred HHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999988989999999999999999999999998887777777766667777666666
Q ss_pred HHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 011713 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 159 (479)
+...+..+++.+.+.|.++|+++||+++.++.+.++|.+..+...+...+......+.......+..+..++++++ ..
T Consensus 183 ~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 262 (571)
T TIGR02203 183 KEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQ 262 (571)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677778889999999999999999999999999999988888777665555544444444444333332222222 22
Q ss_pred HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEE
Q 011713 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (479)
Q Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vs 239 (479)
...|.+++|.+.++..+...+..|+..+...+..+++++.+.+|+.++++.+++.+.. ..+. .+..+.|+++||+
T Consensus 263 ~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~--~~~~~~i~~~~v~ 337 (571)
T TIGR02203 263 AQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG---TRAI--ERARGDVEFRNVT 337 (571)
T ss_pred HHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCC--CCCCCeEEEEEEE
Confidence 3458899999999999999999999999999999999999999999999876543211 1111 1234579999999
Q ss_pred EEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCcc
Q 011713 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (479)
Q Consensus 240 f~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~l 319 (479)
|+|+++.+++|+|+||+|++||+++|+|+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||+|++
T Consensus 338 f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l 417 (571)
T TIGR02203 338 FRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVL 417 (571)
T ss_pred EEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCccc
Confidence 99987656799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCCC--CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 011713 320 FRGSVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (479)
Q Consensus 320 F~gTi~eNi~~~~--~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~T 397 (479)
|+|||+|||+++. ++++++++++|+.+++++++.++|+||||++||+|.+|||||||||+||||++++||||||||||
T Consensus 418 f~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpt 497 (571)
T TIGR02203 418 FNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEAT 497 (571)
T ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 9999999999763 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHH
Q 011713 398 ASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEY 468 (479)
Q Consensus 398 SaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~ 468 (479)
|+||+++|+.+++.|++..+++|+|+||||++.++.||+|++|++|++++.|+|++++++++.|++++..+
T Consensus 498 s~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~ 568 (571)
T TIGR02203 498 SALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQ 568 (571)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHHHHHHHHh
Confidence 99999999999999999988999999999999999999999999999999999999999999999988765
No 27
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-88 Score=673.25 Aligned_cols=454 Identities=25% Similarity=0.356 Sum_probs=364.8
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHhHHHHHHHHHHHHHHH---HHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAV-MASVTWPVLIVAIPTVIVAKYI---QGYYLSSA 77 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~l~~~~~~~~~~~~---~~~~~~~~ 77 (479)
+||.+..+|++.+.+......+..++...+..++..++.+...... ..-.++..+++++..+..+..+ ...++.+.
T Consensus 123 ~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~f 202 (591)
T KOG0057|consen 123 SFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRF 202 (591)
T ss_pred HhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHH
Confidence 6889999999999999998888888777666666655544443322 2234455555444333333321 12222222
Q ss_pred HHHHHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 78 RELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL 157 (479)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (479)
|..+ ..+.....+.+.|++.+.++||.||.|++..++|......+.+...+....... +++.+.+++.+....
T Consensus 203 R~~~---N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~----lnfgQ~~iFsv~~~~ 275 (591)
T KOG0057|consen 203 RKAM---NNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAF----LNFGQKAIFSVALTF 275 (591)
T ss_pred HHHH---HhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHH----HHHHHHHHHHHHHHH
Confidence 2222 234445667889999999999999999999999998888777665544333332 333333333221111
Q ss_pred -HH-----HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCc
Q 011713 158 -IV-----LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHG 231 (479)
Q Consensus 158 -~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~ 231 (479)
++ ...+.++.|.+.....+.+++..|+..+...+..+.++...++-++...+..... .+. +.+.....+
T Consensus 276 im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i---~~~--~~~i~~~~~ 350 (591)
T KOG0057|consen 276 IMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDI---QEA--ALPIELFGG 350 (591)
T ss_pred HHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhh---hhc--cCCcccCCC
Confidence 11 1236788888888888889999999999999999988888887776554321111 111 111112456
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+|+||+|.|++. +++|+++||+|++||+|||||+|||||||++++|+||++ ++|+|+|||+|+++++++++|+.||
T Consensus 351 ~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred cEEEEeeEEEeCCC-CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhee
Confidence 79999999999865 459999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred EEcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCE
Q 011713 312 IIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 390 (479)
Q Consensus 312 ~V~Q~~~lF~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~i 390 (479)
|||||..||++||.+||.++. .+++||+.++||.+++||.|.++|+||+|.|||+|..||||||||++||||++|||||
T Consensus 429 ~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~I 508 (591)
T KOG0057|consen 429 VVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPI 508 (591)
T ss_pred EeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCe
Confidence 999999999999999999875 7999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHHH
Q 011713 391 LILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEYR 469 (479)
Q Consensus 391 liLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~~ 469 (479)
++||||||+||.+||+.+.+.+.....+||+|+|+||++++++||+|+++|+|+++|.|+|+||+++++.|+++|..+.
T Consensus 509 l~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 509 LLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTTQT 587 (591)
T ss_pred EEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhcccc
Confidence 9999999999999999999999998899999999999999999999999999999999999999999999999998764
No 28
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-89 Score=660.91 Aligned_cols=461 Identities=22% Similarity=0.322 Sum_probs=376.9
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIII-AVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
.|+-++.+|.+...+......++..+...+...+..++-+.... ++...++|+.+++++..++++.++........-..
T Consensus 31 ~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~ 110 (497)
T COG5265 31 RFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDF 110 (497)
T ss_pred hhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhheeehhhhHHH
Confidence 45666778877766666666666666555555555554444333 34445889988877666666554422111111112
Q ss_pred HHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 011713 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--I 158 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 158 (479)
.+...++.+..++...+++-+.+++|.|+.|+.+..+|.+..+.+.++..+......|+...-..+........... .
T Consensus 111 rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~ 190 (497)
T COG5265 111 RRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSAL 190 (497)
T ss_pred HHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcHH
Confidence 22233456677788899999999999999999999999999888888776655555555443322222211111111 1
Q ss_pred HHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCC-CCCccEEEEe
Q 011713 159 VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASW-PSHGRIELED 237 (479)
Q Consensus 159 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~-~~~~~I~~~~ 237 (479)
-...+.+++|.+.....+..+++.|+..++..+.++.++...+++.+++++.+.+..... ..++-+ ...+.|.|+|
T Consensus 191 ~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~p---da~~L~~~~~g~v~F~~ 267 (497)
T COG5265 191 GVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAP---DAPPLWPVRLGAVAFIN 267 (497)
T ss_pred HHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCC---CCccccccccceEEEEE
Confidence 123488999999999999999999999999999999999999999999998765532211 111122 2356899999
Q ss_pred EEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCC
Q 011713 238 LKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (479)
Q Consensus 238 vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~ 317 (479)
|+|.|.+.. |+|+|+||++++|+++|+||+||+||||++++|.|||++++|.|.+||+|+++...+++|+.||+||||.
T Consensus 268 V~F~y~~~r-~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDt 346 (497)
T COG5265 268 VSFAYDPRR-PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDT 346 (497)
T ss_pred EEeeccccc-hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccc
Confidence 999998764 5999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCC
Q 011713 318 TLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEA 396 (479)
Q Consensus 318 ~lF~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~ 396 (479)
.||++|+..||.+++ +++++|+++|++.|++++||+.+|+||||.|||+|-.||||||||+||||++||+|+||+||||
T Consensus 347 vLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~dea 426 (497)
T COG5265 347 VLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEA 426 (497)
T ss_pred eehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehh
Confidence 999999999999864 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHH
Q 011713 397 TASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVA 466 (479)
Q Consensus 397 TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~ 466 (479)
|||||..||+.|+.+|++..+++|+++|||||||+-+||.|+||++|+|+|.|+|+||++.+|.|++||.
T Consensus 427 tsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 427 TSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWR 496 (497)
T ss_pred hhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCChHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999995
No 29
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2.2e-86 Score=713.62 Aligned_cols=463 Identities=22% Similarity=0.294 Sum_probs=393.9
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
.+|++.++|++++|+++|++.+...+...+..++..++.+++.+++++.++|+++++++.++++..++..++.+..++..
T Consensus 105 ~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~ 184 (588)
T PRK13657 105 AWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQ 184 (588)
T ss_pred HHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999998888777877787778788888888999999988777666666666666666666666
Q ss_pred HHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 011713 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 159 (479)
+...+..+.+.+.+.|.++|+++||.|+.++.+.+++.+..++..+...+......+......++..+..+++.++ ..
T Consensus 185 ~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 264 (588)
T PRK13657 185 AAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGAAL 264 (588)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677888999999999999999999999999999888777666554444333333333333322222222222 22
Q ss_pred HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEE
Q 011713 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (479)
Q Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vs 239 (479)
...|.+++|.+.+++.+...+..++..+...+..+..+..+++|+.++++.+++.+.. .. ... ..+..+.|+++||+
T Consensus 265 v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~-~~~-~~~~~~~I~~~~vs 341 (588)
T PRK13657 265 VQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP-PG-AID-LGRVKGAVEFDDVS 341 (588)
T ss_pred HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-CC-CCC-cCCCCCeEEEEEEE
Confidence 3458899999999988888899999999998999999999999999998865432211 11 001 11123579999999
Q ss_pred EEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCcc
Q 011713 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (479)
Q Consensus 240 f~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~l 319 (479)
|+|+++ +++|+|+||+++|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||+|++
T Consensus 342 f~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 420 (588)
T PRK13657 342 FSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGL 420 (588)
T ss_pred EEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCccc
Confidence 999753 4699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCC-CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 011713 320 FRGSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA 398 (479)
Q Consensus 320 F~gTi~eNi~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TS 398 (479)
|+|||||||+++ +++++++++++++.+++++++.++|+|+||.+||+|.+|||||||||+||||++++|+|||||||||
T Consensus 421 f~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts 500 (588)
T PRK13657 421 FNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATS 500 (588)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 999999999986 4689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHH
Q 011713 399 SIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEY 468 (479)
Q Consensus 399 aLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~ 468 (479)
+||+++|+.+++.|++..+++|+|+||||++.++.||+|++|++|+++|.|+|++|+++++.|+++++.+
T Consensus 501 ~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 570 (588)
T PRK13657 501 ALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRAQ 570 (588)
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHHHHHh
Confidence 9999999999999999888999999999999999999999999999999999999999999999999855
No 30
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5.9e-86 Score=706.58 Aligned_cols=464 Identities=20% Similarity=0.283 Sum_probs=391.1
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVM-ASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
+||+++++|++++|+++|++.++..+...+..++..++.++++++++ +.++|+++++++..+++..++...+.+..++.
T Consensus 85 ~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 164 (569)
T PRK10789 85 EFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER 164 (569)
T ss_pred HHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999887777777777766655555555 57899988777666666555555565555555
Q ss_pred HHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 011713 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--I 158 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 158 (479)
.+......+++.+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+......+..........+..+++.++ .
T Consensus 165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 244 (569)
T PRK10789 165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSW 244 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555667788999999999999999999999999999888777666555444433333322222222222222111 2
Q ss_pred HHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeE
Q 011713 159 VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (479)
Q Consensus 159 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~v 238 (479)
....|.+++|.+.++..|...+..|+..+...+..++.+..+.+|+.++++.+++.+.. . .+. .+..+.|+|+||
T Consensus 245 lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~--~-~~~--~~~~~~I~~~~v 319 (569)
T PRK10789 245 MVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG--S-EPV--PEGRGELDVNIR 319 (569)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--C-CCC--CCCCCcEEEEEE
Confidence 22458899999999999998899999999999999999999999999999876542211 1 111 112457999999
Q ss_pred EEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCc
Q 011713 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (479)
Q Consensus 239 sf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~ 318 (479)
+|+|+++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++++||||+|+
T Consensus 320 ~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 399 (569)
T PRK10789 320 QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPF 399 (569)
T ss_pred EEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCe
Confidence 99998655679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHhhcCCC-CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 011713 319 LFRGSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (479)
Q Consensus 319 lF~gTi~eNi~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~T 397 (479)
+|++|++|||+++ +++++++++++++.+++++++.++|+||||.+||+|.+|||||||||+||||++++|+||||||||
T Consensus 400 lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt 479 (569)
T PRK10789 400 LFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL 479 (569)
T ss_pred eccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 9999999999976 468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHHHH
Q 011713 398 ASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEYRS 470 (479)
Q Consensus 398 SaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~~~ 470 (479)
|+||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|++++.|+|++|++++|.|+++++.+..
T Consensus 480 s~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~~ 552 (569)
T PRK10789 480 SAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQL 552 (569)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHhhh
Confidence 9999999999999999988899999999999999999999999999999999999999999999999987644
No 31
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.7e-85 Score=698.96 Aligned_cols=424 Identities=23% Similarity=0.296 Sum_probs=353.4
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQ-GYYLSSAREL 80 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~-~~~~~~~~~~ 80 (479)
+||+++++|++++|+++|++.++..+...+..++..++.+++.++++++++|+++++++..+++..++. ....+..++.
T Consensus 102 ~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~ 181 (529)
T TIGR02868 102 AGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAA 181 (529)
T ss_pred cccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 689999999999999999999999999888888888888888899999999999887665544443332 3333333333
Q ss_pred HHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 011713 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI-- 158 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 158 (479)
.+...+..+++.+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+......+......++..+..+++.++.
T Consensus 182 ~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 261 (529)
T TIGR02868 182 EVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGP 261 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445667889999999999999999999999999999888777666555444444333333333333322222221
Q ss_pred HHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeE
Q 011713 159 VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (479)
Q Consensus 159 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~v 238 (479)
....|.+++|.+.+++.|...+..++..+...+..++++..+.+|+.++++.+++.+..... .+....+..+.|+|+||
T Consensus 262 ~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~-~~~~~~~~~~~I~~~~v 340 (529)
T TIGR02868 262 AVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVP-AAGALGLGKPTLELRDL 340 (529)
T ss_pred HHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCC-CCcccCCCCceEEEEEE
Confidence 22458889999989888888888999999999999999999999999999876543211000 01001123457999999
Q ss_pred EEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCc
Q 011713 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (479)
Q Consensus 239 sf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~ 318 (479)
+|+|++++ ++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|++++ .+++|++|+||||||+
T Consensus 341 sf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~ 418 (529)
T TIGR02868 341 SFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAH 418 (529)
T ss_pred EEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcc
Confidence 99997644 599999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cccccHHhhcCCC-CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 011713 319 LFRGSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (479)
Q Consensus 319 lF~gTi~eNi~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~T 397 (479)
||+|||||||+++ +++++|++++||+.|++++||++||+||||+|||+|.+||||||||||||||++++||||||||||
T Consensus 419 lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~T 498 (529)
T TIGR02868 419 LFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPT 498 (529)
T ss_pred cccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 9999999999986 468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEEccCc
Q 011713 398 ASIDSATDAILQRIIREEFPGSTVITIAHRV 428 (479)
Q Consensus 398 SaLD~~te~~i~~~l~~~~~~~TvI~IaHrl 428 (479)
|+||++||+.|++.+++..+++|+|+||||+
T Consensus 499 SaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 499 EHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999998999999999996
No 32
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=8.2e-85 Score=698.96 Aligned_cols=463 Identities=20% Similarity=0.276 Sum_probs=393.8
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
+||+++++|++++|+++|++.++.++...+..++..++.+++.+++++.++|.++++++.++++..++...+.++.++..
T Consensus 105 ~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~ 184 (585)
T TIGR01192 105 SWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQ 184 (585)
T ss_pred HHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999988888888888888888888889999999998877666666666666666666666
Q ss_pred HHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 011713 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 159 (479)
+......+++.+.+.|.++|+++||+|+.++.+.+++.+..++..+...+......+.......+..+..+++.++ ..
T Consensus 185 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~ 264 (585)
T TIGR01192 185 AAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVL 264 (585)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677788999999999999999999999999998887776655544433333322222222222222222222 12
Q ss_pred HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEE
Q 011713 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (479)
Q Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vs 239 (479)
...|.+++|.+.++..|...+..|+..+...+..+..+..+++|+.++++.+++.... ..+....+..+.|+++||+
T Consensus 265 v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~v~ 341 (585)
T TIGR01192 265 VIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP---ADAPELPNVKGAVEFRHIT 341 (585)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC---ccCCCCCCCCCeEEEEEEE
Confidence 3458899999989988888889999999999999999999999999999865432111 1111111123569999999
Q ss_pred EEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCcc
Q 011713 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (479)
Q Consensus 240 f~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~l 319 (479)
|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||.|+++++.+++|++++||||+|++
T Consensus 342 ~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 420 (585)
T TIGR01192 342 FEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGL 420 (585)
T ss_pred EECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCcc
Confidence 999754 3589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCC-CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 011713 320 FRGSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA 398 (479)
Q Consensus 320 F~gTi~eNi~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TS 398 (479)
|++|++|||.++ +++++++++++++.+++++++.++|+|+||.+||+|.+|||||||||+|||||+++|++||||||||
T Consensus 421 f~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts 500 (585)
T TIGR01192 421 FNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATS 500 (585)
T ss_pred CcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 999999999876 4678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHH
Q 011713 399 SIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEY 468 (479)
Q Consensus 399 aLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~ 468 (479)
+||+++|+.+.+.|++..+++|+|+||||+++++.||+|++|++|++++.|+|+||++++|.|+++|+.+
T Consensus 501 ~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 570 (585)
T TIGR01192 501 ALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRRS 570 (585)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHHHHHhC
Confidence 9999999999999999888999999999999999999999999999999999999999999999999866
No 33
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=6.3e-85 Score=701.84 Aligned_cols=465 Identities=24% Similarity=0.365 Sum_probs=393.9
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
.||++.++|++++|+++|++.++.++...+..++..++.+++.+++++.++|+++++++..+++..++..++.+..++..
T Consensus 107 ~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~ 186 (576)
T TIGR02204 107 SFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLS 186 (576)
T ss_pred HHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999998888888888888888888999999999887766555555444455555555566
Q ss_pred HHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 011713 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 159 (479)
+......+++.+.+.|.++|+++||+++.++.+.++|.+..+...+...+......+.......+..+..++..++ ..
T Consensus 187 ~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 266 (576)
T TIGR02204 187 RESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHD 266 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677788899999999999999999999999999888777666554444433333333222222222221111 12
Q ss_pred HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEE
Q 011713 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (479)
Q Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vs 239 (479)
...|.++.|.+.++..+...+..|+..+...+..+..+..+++|+.++++.+++.+..... .....+..+.|+|+||+
T Consensus 267 v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~--~~~~~~~~~~i~~~~v~ 344 (576)
T TIGR02204 267 VIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHP--KTLPVPLRGEIEFEQVN 344 (576)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCC--ccCCcCCCceEEEEEEE
Confidence 2458889999988888888899999999999999999999999999999876542211101 11111223579999999
Q ss_pred EEeCCCC-CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCc
Q 011713 240 VRYRPNT-PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (479)
Q Consensus 240 f~Y~~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~ 318 (479)
|+|+++. +++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+|+||+|+
T Consensus 345 f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~ 424 (576)
T TIGR02204 345 FAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPV 424 (576)
T ss_pred EECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCc
Confidence 9997543 579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 011713 319 LFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (479)
Q Consensus 319 lF~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~T 397 (479)
+|+|||+|||+++. +.++++++++++.++++++++++|+|+||++||+|.+|||||||||+||||++++|+||||||||
T Consensus 425 lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpt 504 (576)
T TIGR02204 425 LFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEAT 504 (576)
T ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcc
Confidence 99999999999754 57899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHH
Q 011713 398 ASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEY 468 (479)
Q Consensus 398 SaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~ 468 (479)
|+||+++|+.+++.+++..+++|+|+||||++.++.||+|++|++|++++.|+|++|+++++.|++|++.+
T Consensus 505 s~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~~~~~l~~~~ 575 (576)
T TIGR02204 505 SALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLARLQ 575 (576)
T ss_pred cccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCChHHHHHhhc
Confidence 99999999999999999988999999999999999999999999999999999999999999999998765
No 34
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=5.6e-83 Score=679.63 Aligned_cols=434 Identities=21% Similarity=0.301 Sum_probs=363.9
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
+||+++++|++++|+++|++.++..+...+..++..++.+++.+++++.++|+++++++..+++..++...+.++.++..
T Consensus 93 ~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~ 172 (529)
T TIGR02857 93 GWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAA 172 (529)
T ss_pred hhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999998888888888888888888889999999887665554444443444444444444
Q ss_pred HHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 011713 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 159 (479)
+...+..+++.+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+......+......++..+..+++.++ ..
T Consensus 173 ~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (529)
T TIGR02857 173 RKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFR 252 (529)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566778899999999999999999999999999888777666554444444333333333333322221111 12
Q ss_pred HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEE
Q 011713 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (479)
Q Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vs 239 (479)
...|.++.|.+.++..|...+..|+..+...+..++++..+++|+.++++.+++... .. +. ..+..+.|+|+||+
T Consensus 253 ~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~~-~~-~~~~~~~i~~~~v~ 327 (529)
T TIGR02857 253 LLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---KA-PV-TAAPAPSLEFSGLS 327 (529)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---Cc-CC-CCCCCCeEEEEEEE
Confidence 235788999888888888888889988989999999999999999999985433211 11 11 11123479999999
Q ss_pred EEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCcc
Q 011713 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (479)
Q Consensus 240 f~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~l 319 (479)
|+|++..+++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||+|++
T Consensus 328 f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~l 407 (529)
T TIGR02857 328 VAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFL 407 (529)
T ss_pred EECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcc
Confidence 99986655799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCC-CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 011713 320 FRGSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA 398 (479)
Q Consensus 320 F~gTi~eNi~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TS 398 (479)
|++||+|||+++ ++++++++++|++.+++++|++++|+||||++||+|.+|||||||||+||||++++|+|+|||||||
T Consensus 408 f~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts 487 (529)
T TIGR02857 408 FAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTA 487 (529)
T ss_pred cCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 999999999875 4679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEE
Q 011713 399 SIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVL 440 (479)
Q Consensus 399 aLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl 440 (479)
+||+++|+.+++.+++..+++|+|+||||+++++.||+|+||
T Consensus 488 ~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 488 HLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999988899999999999999999999986
No 35
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.8e-81 Score=665.42 Aligned_cols=443 Identities=18% Similarity=0.219 Sum_probs=364.5
Q ss_pred CccHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011713 8 PVGRIFTRVSSDMSTMDFDLPS-AISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGT 86 (479)
Q Consensus 8 ~~G~l~~r~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (479)
..+...+++++|++.++.++.. .+..++..++.++ .+++++.++|+++++++..+++.+++..++.+..++..+...+
T Consensus 96 ~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~ 174 (544)
T TIGR01842 96 RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATE 174 (544)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3467789999999999988776 4444555444443 4567888999988765544444444444444444444455556
Q ss_pred cccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCc
Q 011713 87 TKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IVLLPGK 164 (479)
Q Consensus 87 ~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 164 (479)
..+++.+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..............+..+..+++.++ .....|.
T Consensus 175 ~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ 254 (544)
T TIGR01842 175 ASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGE 254 (544)
T ss_pred HHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77788899999999999999999999999999888777666554444333333332223222222222222 1224588
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEEEEeCC
Q 011713 165 HLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRP 244 (479)
Q Consensus 165 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~ 244 (479)
+++|.+.+++.+...+..|+..+...+..++.+..+.+|+.++++.+++.+. ... . .+..+.|+++||+|+|++
T Consensus 255 it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~-~--~~~~~~i~~~~v~~~y~~ 328 (544)
T TIGR01842 255 ITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AMP-L--PEPEGHLSVENVTIVPPG 328 (544)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CCC-C--CCCCCeEEEEEEEEEcCC
Confidence 9999999999999889999999999999999999999999999987654321 111 1 112357999999999976
Q ss_pred CCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccH
Q 011713 245 NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSV 324 (479)
Q Consensus 245 ~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi 324 (479)
+.+++|+|+||+++|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++++||||+|++|++|+
T Consensus 329 ~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti 408 (544)
T TIGR01842 329 GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTV 408 (544)
T ss_pred CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccH
Confidence 55679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHH
Q 011713 325 RTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSA 403 (479)
Q Consensus 325 ~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~ 403 (479)
+|||++++ ++++++++++++.++++++++++|+|+||.+||+|.+|||||||||+||||++++|++||||||||+||++
T Consensus 409 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~ 488 (544)
T TIGR01842 409 AENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEE 488 (544)
T ss_pred HHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHH
Confidence 99998654 58999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHC-CCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhcc
Q 011713 404 TDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 404 te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
+++.+.+.+++.. +++|+|+||||+++++.||+|++|++|++++.|+|+||+++
T Consensus 489 ~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 489 GEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 9999999999875 68999999999999999999999999999999999999763
No 36
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.4e-80 Score=715.57 Aligned_cols=464 Identities=18% Similarity=0.249 Sum_probs=379.8
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
+||+++++|++.+|+++|++.++..+...+..++..++.+++.++++++++|+++++++.++++++++..++.+..+...
T Consensus 146 ~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~ 225 (1466)
T PTZ00265 146 QFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINK 225 (1466)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999998877776666666556666555555
Q ss_pred HHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 011713 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIV-- 159 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 159 (479)
+......+...+.+.|+++|+++||+|+.|+.+.++|.+..+...+...+......+......++..+..++++++..
T Consensus 226 ~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~l 305 (1466)
T PTZ00265 226 KTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRI 305 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556678899999999999999999999999999998777776665554444433333333332222222222211
Q ss_pred HhCC--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCc
Q 011713 160 LLPG--------KHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHG 231 (479)
Q Consensus 160 ~~~~--------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~ 231 (479)
...+ .+++|.+.+++.+.......+..+...+..++.+..|++|++++++.+++.+.. ..... .+..+
T Consensus 306 v~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~-~~~~~---~~~~~ 381 (1466)
T PTZ00265 306 IISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENN-DDGKK---LKDIK 381 (1466)
T ss_pred HHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCCcc---CCCCC
Confidence 1222 345665554443333323333344556678889999999999999876543211 11111 11224
Q ss_pred cEEEEeEEEEeCCC-CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEE-CCeecCCCCHHHHhcc
Q 011713 232 RIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI-DGLDICSMGLKDLRTK 309 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i-~g~~i~~~~~~~lr~~ 309 (479)
.|+|+||+|+|+.. ..++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++ ||+|+++++..++|++
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 79999999999753 246999999999999999999999999999999999999999999999 5799999999999999
Q ss_pred ceEEcCCCccccccHHhhcCCCC---------------------------------------------------------
Q 011713 310 LSIIPQEPTLFRGSVRTNLDPLG--------------------------------------------------------- 332 (479)
Q Consensus 310 i~~V~Q~~~lF~gTi~eNi~~~~--------------------------------------------------------- 332 (479)
|+||||+|.||++||+|||.++.
T Consensus 462 Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 541 (1466)
T PTZ00265 462 IGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNY 541 (1466)
T ss_pred ccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccccc
Confidence 99999999999999999997631
Q ss_pred -CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 011713 333 -MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRI 411 (479)
Q Consensus 333 -~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~ 411 (479)
+++++++++||+.+++++||.+||+||||.+|++|.+|||||||||+||||++++|+|||||||||+||+++|+.|++.
T Consensus 542 ~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~ 621 (1466)
T PTZ00265 542 QTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKT 621 (1466)
T ss_pred ccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 2467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHC--CCcEEEEEccCchhhhcCCEEEEEeCC----------------------------------------------
Q 011713 412 IREEF--PGSTVITIAHRVPTITDSDMVMVLSYG---------------------------------------------- 443 (479)
Q Consensus 412 l~~~~--~~~TvI~IaHrl~~i~~~D~I~vl~~G---------------------------------------------- 443 (479)
|+++. +++|+|+||||+++++.||+|+||++|
T Consensus 622 L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 701 (1466)
T PTZ00265 622 INNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAG 701 (1466)
T ss_pred HHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 99985 489999999999999999999999986
Q ss_pred -EEEEecChhhhhc-cCchHHHHHHHHH
Q 011713 444 -ELVEYDLPSNLMK-TNSAFSKLVAEYR 469 (479)
Q Consensus 444 -~Ive~G~~~eLl~-~~g~y~~l~~~~~ 469 (479)
+|+|+|+|+||++ ++|.|+.|++.|.
T Consensus 702 ~~ive~Gth~~L~~~~~g~y~~l~~~q~ 729 (1466)
T PTZ00265 702 SYIIEQGTHDALMKNKNGIYYTMINNQK 729 (1466)
T ss_pred ceeEeeCCHHHHHhccCCcHHHHHhhhc
Confidence 5999999999998 7999999997764
No 37
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=2.6e-77 Score=637.63 Aligned_cols=438 Identities=18% Similarity=0.171 Sum_probs=347.3
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
+||+++++|++++|+++|++.++.++.. +..++..++.+++.++++++++|.++++++.++++..++..++.++.++..
T Consensus 102 ~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~ 180 (555)
T TIGR01194 102 EEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFF 180 (555)
T ss_pred HHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999998864 667777788888888999999999988766555554444444444444444
Q ss_pred HHhhhcccchHHHHHHHHchHHHHHhccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMD--MFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIV 159 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (479)
+...+..+++++.+.|.++|++++|+|+.++ ...+++.+..++..+...+..............+..+...+..++ .
T Consensus 181 ~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 259 (555)
T TIGR01194 181 HAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFA-A 259 (555)
T ss_pred HHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 4455566788999999999999999999954 445666665555544433222222111111122111111111111 1
Q ss_pred HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC---ccCCCC--CCCCCCCccEE
Q 011713 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAI---IEETKP--PASWPSHGRIE 234 (479)
Q Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~---~~~~~~--~~~~~~~~~I~ 234 (479)
...+.++.|.+.+++.|...+..|+..+...+..++++..+++|+.++++.+++++.. .+.... .......+.|+
T Consensus 260 ~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 339 (555)
T TIGR01194 260 AMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIE 339 (555)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEE
Confidence 1226788999989999999999999999999999999999999999998642221110 000000 00011235799
Q ss_pred EEeEEEEeCCC---CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 235 LEDLKVRYRPN---TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 235 ~~~vsf~Y~~~---~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
|+||+|+|++. .+++|+|+||++++||++|||||||||||||+++|+|+|+|++|+|++||.|+++++.+++|++++
T Consensus 340 ~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 419 (555)
T TIGR01194 340 LKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFS 419 (555)
T ss_pred EEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCc
Confidence 99999999753 236999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEE
Q 011713 312 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 391 (479)
Q Consensus 312 ~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~il 391 (479)
+|+||+++|++|+++|+. +++++++++++++.+++++++.++|+||||. .+|||||||||+||||++++|+||
T Consensus 420 ~v~q~~~lf~~ti~~n~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~il 492 (555)
T TIGR01194 420 AIFADFHLFDDLIGPDEG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPIL 492 (555)
T ss_pred EEccChhhhhhhhhcccc--cchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999999999999973 4678999999999999999999999999995 789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHH-HH-CCCcEEEEEccCchhhhcCCEEEEEeCCEEEEe
Q 011713 392 ILDEATASIDSATDAILQRIIR-EE-FPGSTVITIAHRVPTITDSDMVMVLSYGELVEY 448 (479)
Q Consensus 392 iLDE~TSaLD~~te~~i~~~l~-~~-~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~ 448 (479)
|||||||+||+++|+.+++.+. .. .+++|+|+||||+++++.||+|++|++|+|+|.
T Consensus 493 ilDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 493 LFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999998764 33 468999999999999999999999999999874
No 38
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.8e-77 Score=691.40 Aligned_cols=447 Identities=18% Similarity=0.256 Sum_probs=350.6
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHH---HHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIV---AIPTVIVAKYIQGYYLSSAR 78 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~---~~~~~~~~~~~~~~~~~~~~ 78 (479)
.+|++.++|+++|++++|++.++.++ ..+..++...+.+++++++++. .+.+. .++++++...+..++.+..+
T Consensus 390 ~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~---~lg~~~l~~~~v~~l~~pl~~~~~~~~~ 465 (1495)
T PLN03232 390 EARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQ---QLGVASLFGSLILFLLIPLQTLIVRKMR 465 (1495)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999999876 3455555555444444433322 22221 11111222222233334444
Q ss_pred HHHHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 79 ELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI 158 (479)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (479)
+..+...+..++..+.+.|.++|+++||.|++|+.+.+++.+..++..+...+......+..........++.++.....
T Consensus 466 ~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~ 545 (1495)
T PLN03232 466 KLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVF 545 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455666788899999999999999999999999998877776665544433332222211111111111111112
Q ss_pred HHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeE
Q 011713 159 VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (479)
Q Consensus 159 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~v 238 (479)
.+..+.+++|.+.+++++...+..|+..++..+..+.++.+|++|+.++++.+++... ...+. .+..+.|+|+||
T Consensus 546 ~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~---~~~~~--~~~~~~I~~~~v 620 (1495)
T PLN03232 546 VLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA---QNPPL--QPGAPAISIKNG 620 (1495)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc---ccCCc--CCCCCcEEEEee
Confidence 2345778999998998888889899999999999999999999999999987543211 00110 112346999999
Q ss_pred EEEeCCC-CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCC
Q 011713 239 KVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (479)
Q Consensus 239 sf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~ 317 (479)
+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|.+. .+|++|+||||+|
T Consensus 621 sF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~Iayv~Q~p 688 (1495)
T PLN03232 621 YFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGSVAYVPQVS 688 (1495)
T ss_pred EEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCcEEEEcCcc
Confidence 9999753 35799999999999999999999999999999999999999999773 4678999999999
Q ss_pred ccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 011713 318 TLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (479)
Q Consensus 318 ~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~T 397 (479)
+||+|||||||.++.+++++++++|++.|+++++++.||+|++|.|||+|.+||||||||||||||++++|+||||||||
T Consensus 689 ~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEpt 768 (1495)
T PLN03232 689 WIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPL 768 (1495)
T ss_pred ccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999999988788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHH-HHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHHH
Q 011713 398 ASIDSATDAILQR-IIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEYR 469 (479)
Q Consensus 398 SaLD~~te~~i~~-~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~~ 469 (479)
||||+++|+.+.+ .++...++||+|+||||++.++.||+|++|++|+|+++|+|+||+++++.|+++++.+.
T Consensus 769 SaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~ 841 (1495)
T PLN03232 769 SALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAG 841 (1495)
T ss_pred cccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhcc
Confidence 9999999997765 46767789999999999999999999999999999999999999999999999987653
No 39
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.6e-76 Score=686.23 Aligned_cols=448 Identities=17% Similarity=0.250 Sum_probs=350.3
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
.++++.++|+++|++++|++.++.++. .+..++...+.+++++++++..-.+.+++.++++++...+..++.+..++..
T Consensus 390 ~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~ 468 (1622)
T PLN03130 390 EGRKKFTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLT 468 (1622)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999999999998874 3555555555555544444332111122222222222223333334444444
Q ss_pred HHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011713 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVLL 161 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (479)
+...+...+..+.+.|.++|+++||.|++|+.+.+++.+..++..+...+......+..........++.++......+.
T Consensus 469 ~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~ 548 (1622)
T PLN03130 469 KEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLL 548 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455667788899999999999999999999999998877766554433332222222211111111111111222234
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEEEE
Q 011713 162 PGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVR 241 (479)
Q Consensus 162 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vsf~ 241 (479)
.+.+++|.+++++++...+..|+..++..+..+.++.++++|+.++++.+++.+. ...+. .+..+.|+|+||+|+
T Consensus 549 ~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~---~~~~~--~~~~~~I~~~nvsf~ 623 (1622)
T PLN03130 549 GGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL---PNPPL--EPGLPAISIKNGYFS 623 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc---cCCcc--cCCCCceEEEeeEEE
Confidence 5788999888888888888888888999999999999999999999986543211 00000 012246999999999
Q ss_pred eCCC-CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCC-ceEEECCeecCCCCHHHHhccceEEcCCCcc
Q 011713 242 YRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN-GRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (479)
Q Consensus 242 Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~-G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~l 319 (479)
|++. .+++|+|+||+|++||++|||||||||||||+++|+|+|+|++ |+|.+ |++|+||||+|+|
T Consensus 624 y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~~Iayv~Q~p~L 690 (1622)
T PLN03130 624 WDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RGTVAYVPQVSWI 690 (1622)
T ss_pred ccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cCeEEEEcCcccc
Confidence 9753 3579999999999999999999999999999999999999999 99974 5689999999999
Q ss_pred ccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCC
Q 011713 320 FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATAS 399 (479)
Q Consensus 320 F~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSa 399 (479)
|+|||||||.++.+++++++++|++.|+++++++.||+|++|.|||+|.+|||||||||+||||++++|+||||||||||
T Consensus 691 fngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSA 770 (1622)
T PLN03130 691 FNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSA 770 (1622)
T ss_pred CCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 99999999998878899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHH-HHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHH
Q 011713 400 IDSATDAILQ-RIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEY 468 (479)
Q Consensus 400 LD~~te~~i~-~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~ 468 (479)
||+++++.|. ++++...++||+|+||||++.++.||+|++|++|+|+++|+|+||+++++.|+++++.+
T Consensus 771 LD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~ 840 (1622)
T PLN03130 771 LDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENA 840 (1622)
T ss_pred cCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhc
Confidence 9999998775 56777778999999999999999999999999999999999999999999999998754
No 40
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2.1e-75 Score=577.25 Aligned_cols=433 Identities=20% Similarity=0.262 Sum_probs=344.0
Q ss_pred HhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHH
Q 011713 18 SDMSTMDFDLPSAI-SLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAA 96 (479)
Q Consensus 18 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (479)
+|.++++.|++..- .-++..-.+. +++.++|.+++++.++.+...++...+...-....++-.++..+...+.++...
T Consensus 124 rDL~qvR~Fltg~g~~A~fDaPW~P-~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~ 202 (580)
T COG4618 124 RDLDQVRQFLTGTGLTAFFDAPWMP-LYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLAD 202 (580)
T ss_pred hhHHHHHHHHcCCCcchhcCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 58888888876532 2233333333 456677888888877654433333322222222223333334445556677888
Q ss_pred HHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCcccHHHHHHHH
Q 011713 97 ETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IVLLPGKHLPGFVGLSL 174 (479)
Q Consensus 97 e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~ 174 (479)
.+.++.++|++.|+.....++|.+....+........-....+......+-.++-..+..+ +..+.+++++|.+.+..
T Consensus 203 a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~S 282 (580)
T COG4618 203 ATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGS 282 (580)
T ss_pred HHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHH
Confidence 9999999999999999999999887776665544433333333322222222222222222 12245889999877766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEEEEeCCCCCceeeeee
Q 011713 175 SYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGIT 254 (479)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~is 254 (479)
..+.....|+......|.++..++.|++|+.+++...++.... -+. +...+.+.++++++.-|+.++|+|+|+|
T Consensus 283 Il~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~----m~L--P~P~g~L~Ve~l~~~PPg~~~pil~~is 356 (580)
T COG4618 283 ILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAER----MPL--PAPQGALSVERLTAAPPGQKKPILKGIS 356 (580)
T ss_pred HHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC----CCC--CCCCceeeEeeeeecCCCCCCcceecce
Confidence 6666666777788888899999999999999999865543211 111 1235789999999988888889999999
Q ss_pred EEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcC-CCCC
Q 011713 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD-PLGM 333 (479)
Q Consensus 255 l~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~-~~~~ 333 (479)
|++++||-+|||||||||||||+++|.|.++|.+|.|++||-|+++++.+++-++|||+|||..||+|||+|||+ |.++
T Consensus 357 F~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~ 436 (580)
T COG4618 357 FALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEE 436 (580)
T ss_pred eEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997 4558
Q ss_pred CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 011713 334 YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIR 413 (479)
Q Consensus 334 ~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~ 413 (479)
.+++.|.+|++.|+.||.|.++|+||||.|||+|..|||||||||+|||||+.||.+++||||.|+||.+-|+.+.++|.
T Consensus 437 ~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~ 516 (580)
T COG4618 437 ADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAIL 516 (580)
T ss_pred CCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHC-CCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhcc
Q 011713 414 EEF-PGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 414 ~~~-~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
+.+ +++|+|+||||++.+..+|+|+||++|++...|+-+|.+++
T Consensus 517 ~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 517 AAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred HHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 764 68999999999999999999999999999999999999863
No 41
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.3e-72 Score=601.32 Aligned_cols=437 Identities=16% Similarity=0.158 Sum_probs=331.8
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
+||+++++|++++|+++|++.+...+. .++.++.+++.++++++++++++|++++++++++++..++..++.++.++..
T Consensus 97 ~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~ 175 (547)
T PRK10522 97 ERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHM 175 (547)
T ss_pred HHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999988665 4667788888888889999999999998877666665555555555555555
Q ss_pred HHhhhcccchHHHHHHHHchHHHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMM---DMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI 158 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (479)
+...+..+++++.+.|.++|+++++ ++.+ +.+.+++.+..++..+...+..............+. ..+++++.
T Consensus 176 ~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 251 (547)
T PRK10522 176 ATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAVNWSNIMM---LGAIGLVF 251 (547)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 5556677789999999999999996 4443 345666666555544433222211111111111111 11111111
Q ss_pred HHh--CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEE
Q 011713 159 VLL--PGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELE 236 (479)
Q Consensus 159 ~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~ 236 (479)
+.. .+....+.++.+..+...+..|+..+...+..++.+..+.+|+.++++.+++.+. .. ..+ .+..+.|+|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~--~~-~~~--~~~~~~i~~~ 326 (547)
T PRK10522 252 YMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF--PR-PQA--FPDWQTLELR 326 (547)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--cc-ccc--cCcCceEEEE
Confidence 111 1112233333333334445678888888889999999999999999765443211 11 111 1113479999
Q ss_pred eEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCC
Q 011713 237 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQE 316 (479)
Q Consensus 237 ~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~ 316 (479)
||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+|||||
T Consensus 327 ~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 405 (547)
T PRK10522 327 NVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTD 405 (547)
T ss_pred EEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecC
Confidence 999999743 4699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCC
Q 011713 317 PTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEA 396 (479)
Q Consensus 317 ~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~ 396 (479)
|++|++|+++| +.+.++++++++++.+++.+++.. |+|. .+|.+|||||||||+||||++++|++||||||
T Consensus 406 ~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ 476 (547)
T PRK10522 406 FHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEW 476 (547)
T ss_pred hhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 99999999999 345778888888888887776653 4442 24899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhcCCEEEEEeCCEEEEe-cChhhhhccC
Q 011713 397 TASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITDSDMVMVLSYGELVEY-DLPSNLMKTN 458 (479)
Q Consensus 397 TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~-G~~~eLl~~~ 458 (479)
||+||+++|+.+.+.+.+.. +++|+|+||||+++++.||+|++|++|+++|. |++.+-..++
T Consensus 477 ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~~~~~~~~ 541 (547)
T PRK10522 477 AADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERDAASRD 541 (547)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCchhhhhhh
Confidence 99999999999999987654 48999999999999999999999999999986 6666654443
No 42
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.9e-70 Score=607.74 Aligned_cols=444 Identities=21% Similarity=0.314 Sum_probs=355.6
Q ss_pred cCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011713 6 STPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMAS-VTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMN 84 (479)
Q Consensus 6 ~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (479)
.+..|+++|-++.|++.++.+.... ..+....+.+++++.+++. +.|. +++.+.++++++.++.+..+..++.+...
T Consensus 295 ~~t~G~ivNlms~D~~ri~~~~~~~-h~~w~~Plqi~~~l~lLy~~LG~s-a~~G~~~~il~~p~n~~~a~~~~~~q~~~ 372 (1381)
T KOG0054|consen 295 ETTVGEIVNLMSVDAQRLSDAACFL-HLLWSAPLQIILALYLLYGLLGPS-ALAGVAVMVLLIPLNSFLAKKIAKFQKRL 372 (1381)
T ss_pred CCCcchhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999887654 4444455555554444443 3333 23333333444444444444455555555
Q ss_pred hhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCC
Q 011713 85 GTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIV-LLPG 163 (479)
Q Consensus 85 ~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 163 (479)
.....+....+.|.++||++||.|++|+.|.++..+..++..+...+.................++.++.....+ ...+
T Consensus 373 m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~ 452 (1381)
T KOG0054|consen 373 MKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLLGN 452 (1381)
T ss_pred hhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 566777888999999999999999999999999988888777665554444443333333333333333322233 2235
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEEEEeC
Q 011713 164 KHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYR 243 (479)
Q Consensus 164 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~ 243 (479)
..++..++..+++...+..|+..++..+..+.++.+|++|+.+++..++..+..... ....+....|+++|.+|+|+
T Consensus 453 ~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~---~~~~~~~~~i~i~~~sfsW~ 529 (1381)
T KOG0054|consen 453 LLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVER---SPDEAGENAIEIKNGSFSWD 529 (1381)
T ss_pred cccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccc---CCCCCCCceEEEeeeeEecC
Confidence 566767777788888888888889999999999999999999999876543321110 01112344699999999997
Q ss_pred CC-CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccc
Q 011713 244 PN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG 322 (479)
Q Consensus 244 ~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~g 322 (479)
++ .++.|+||||+|++|+.+||||+.|||||+|+..|+|..+..+|++.++| .++||||+||+|+|
T Consensus 530 ~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g-------------siaYv~Q~pWI~ng 596 (1381)
T KOG0054|consen 530 SESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG-------------SVAYVPQQPWIQNG 596 (1381)
T ss_pred CCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-------------eEEEeccccHhhCC
Confidence 63 44599999999999999999999999999999999999999999999999 49999999999999
Q ss_pred cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCH
Q 011713 323 SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDS 402 (479)
Q Consensus 323 Ti~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~ 402 (479)
||||||.|+.++++++.+++++.|+|.++++.||.|..|.|||+|.+|||||||||+||||+|+|++|++||+|.||+|+
T Consensus 597 TvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDa 676 (1381)
T KOG0054|consen 597 TVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDA 676 (1381)
T ss_pred cHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHH
Q 011713 403 ATDA-ILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAE 467 (479)
Q Consensus 403 ~te~-~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~ 467 (479)
++.+ .+.++|+...++||+|++||.++.+++||+|+||++|+|++.|+|+||++.++.|.++..+
T Consensus 677 hvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~ 742 (1381)
T KOG0054|consen 677 HVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHE 742 (1381)
T ss_pred hhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhc
Confidence 9966 5566788888999999999999999999999999999999999999999999999988544
No 43
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=9.5e-69 Score=623.60 Aligned_cols=450 Identities=18% Similarity=0.253 Sum_probs=345.4
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
.++++.++|+++|++++|++.+.... ..+..++...+.+++++++++..-.+.+++.+.++++...+...+.+..+...
T Consensus 407 ~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 485 (1522)
T TIGR00957 407 SARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQ 485 (1522)
T ss_pred hhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999998755 34555555555555554444332111222222222222222233333334444
Q ss_pred HHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 011713 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAA-LLIVL 160 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 160 (479)
+...+...+..+.+.|.++|+++||.|++|+.+.+++.+..++..+...+......+.. .......+++.++. ....+
T Consensus 486 ~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~f~~~~~ 564 (1522)
T TIGR00957 486 VAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGT-FTWVCTPFLVALITFAVYVT 564 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 44445566778899999999999999999999999998887776554433322222211 11111111111111 11222
Q ss_pred h--CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeE
Q 011713 161 L--PGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (479)
Q Consensus 161 ~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~v 238 (479)
. .+.++.+.+..++++...+..|+..++..+..+.++..|++|+.++++.+++++...+.. .. .....+.|+++|+
T Consensus 565 ~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~-~~-~~~~~~~i~~~~~ 642 (1522)
T TIGR00957 565 VDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERR-TI-KPGEGNSITVHNA 642 (1522)
T ss_pred hcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccc-cc-CCCCCCcEEEEEe
Confidence 2 245667777777777777888898999999999999999999999998764432110000 00 0011236999999
Q ss_pred EEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCc
Q 011713 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (479)
Q Consensus 239 sf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~ 318 (479)
+|+|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+|| +|+||||+|+
T Consensus 643 ~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~~ 709 (1522)
T TIGR00957 643 TFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAW 709 (1522)
T ss_pred EEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEEEcCCcc
Confidence 999976556799999999999999999999999999999999999999999999998 5999999999
Q ss_pred cccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 011713 319 LFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA 398 (479)
Q Consensus 319 lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TS 398 (479)
+|++||+|||.++.+.++++++++++.|++.+++..+|+|++|.+||+|.+||||||||++||||++++|+|+|||||||
T Consensus 710 l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~s 789 (1522)
T TIGR00957 710 IQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 789 (1522)
T ss_pred ccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999999999876678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH---HCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHH
Q 011713 399 SIDSATDAILQRIIRE---EFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEY 468 (479)
Q Consensus 399 aLD~~te~~i~~~l~~---~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~ 468 (479)
+||+++++.+.+.+.+ ..+++|+|+|||+++.++.||+|++|++|+|+++|+|++++++++.|.+++..+
T Consensus 790 aLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 862 (1522)
T TIGR00957 790 AVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTY 862 (1522)
T ss_pred ccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhh
Confidence 9999999999998853 457899999999999999999999999999999999999999999999988744
No 44
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=5.8e-66 Score=558.16 Aligned_cols=424 Identities=13% Similarity=0.087 Sum_probs=344.9
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMAS-VTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
.||++ ++|++.+|+++|++.+...+...+..++..++.++++++.++. ++|.++++++...++..++.+++.++..+.
T Consensus 188 ~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~ 266 (659)
T TIGR00954 188 SNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKL 266 (659)
T ss_pred ccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHH
Confidence 46775 7899999999999999999999999999999999888887776 999998887777777777777888887888
Q ss_pred HHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--HHHH
Q 011713 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLI--IL--TAAL 156 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~ 156 (479)
.+...+..+.+.+.+.|.++|+++||+|+.++.+.+++.+..++..+...+......++.....++...+ .+ +.+.
T Consensus 267 ~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g 346 (659)
T TIGR00954 267 TVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVS 346 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8878888899999999999999999999999999999988888877776666655555555544443211 11 1111
Q ss_pred HHHHh-C----CcccHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC-------CCccC
Q 011713 157 LIVLL-P----GKHLPGFVGL-SLSY---ALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPP-------AIIEE 220 (479)
Q Consensus 157 ~~~~~-~----~~~~~g~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~-------~~~~~ 220 (479)
..++. . |.++.|.... ++.| ...+..++..+...+..++++.++.+|+.++++.+++.. ...+.
T Consensus 347 ~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~ 426 (659)
T TIGR00954 347 IPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEI 426 (659)
T ss_pred HHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 11111 1 5677775443 4444 445678888899999999999999999999997533210 00000
Q ss_pred CC----------C---CCCCCCCccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCC
Q 011713 221 TK----------P---PASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE 287 (479)
Q Consensus 221 ~~----------~---~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~ 287 (479)
.. . .......+.|+++||+|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+|+|+
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~ 505 (659)
T TIGR00954 427 ESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY 505 (659)
T ss_pred cccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 00 0 0000123469999999999743 45999999999999999999999999999999999999999
Q ss_pred CceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCC--------CCCCHHHHHHHHHHccHHHHHHhCCccc
Q 011713 288 NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL--------GMYSDNEIWEAMEKCQLKATISRLPMLL 359 (479)
Q Consensus 288 ~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~--------~~~~~~~i~~a~~~a~l~~~i~~lp~G~ 359 (479)
+|+|.+++ |++++||||+|++|++|++|||.+. ++.++++++++++.+++++++.+ |.||
T Consensus 506 ~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~ 573 (659)
T TIGR00954 506 GGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGW 573 (659)
T ss_pred CCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCc
Confidence 99999864 6789999999999999999999753 23578899999999999999988 9999
Q ss_pred cccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEE
Q 011713 360 DSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMV 439 (479)
Q Consensus 360 ~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~v 439 (479)
||..+ .+.+||||||||++||||++++|+++|||||||+||+++++.+.+.+++. ++|+|+||||++.++.||+|++
T Consensus 574 ~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~ 650 (659)
T TIGR00954 574 SAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLY 650 (659)
T ss_pred ccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEE
Confidence 99987 56799999999999999999999999999999999999999999999874 8999999999999999999999
Q ss_pred EeC
Q 011713 440 LSY 442 (479)
Q Consensus 440 l~~ 442 (479)
|+.
T Consensus 651 l~~ 653 (659)
T TIGR00954 651 MDG 653 (659)
T ss_pred EeC
Confidence 973
No 45
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=4.4e-65 Score=591.27 Aligned_cols=441 Identities=17% Similarity=0.242 Sum_probs=341.9
Q ss_pred ccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 3 FFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMR 82 (479)
Q Consensus 3 ~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (479)
.+++.++|+++|++++|++.+...+... ..++...+.+++++++++....+.+++.+.++++++.+..++.+...+..+
T Consensus 172 ~~~~~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~ 250 (1490)
T TIGR01271 172 VLDKISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRD 250 (1490)
T ss_pred HhcCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999877654 344455555555555554444444444444444444444445555555555
Q ss_pred HhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011713 83 MNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVLLP 162 (479)
Q Consensus 83 ~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (479)
.......+..+.+.|.++|+++||.|++|+.+.+++.+..+...+...+......+..........++.++.+..+. +.
T Consensus 251 ~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~y~-~~ 329 (1490)
T TIGR01271 251 KRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLSVVPYA-LI 329 (1490)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 55566677888999999999999999999999999988877766655443333222222111111111111111112 22
Q ss_pred CcccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEEEE
Q 011713 163 GKHLPGFVGLSLSYALTLSSIQ-VIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVR 241 (479)
Q Consensus 163 ~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vsf~ 241 (479)
+..+++.++.++++...+..++ ..++..+..+.++.+|++||.+++..++..+. . .. .....|+++|++|.
T Consensus 330 ~~~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~---~--~~---~~~~~i~~~~~~f~ 401 (1490)
T TIGR01271 330 KGIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTL---E--YN---LTTTEVEMVNVTAS 401 (1490)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc---c--cc---CCCCceEEecceEe
Confidence 3345666666677766665555 46888888999999999999999986543211 0 00 11235899999999
Q ss_pred eCCC--------------------------------CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCc
Q 011713 242 YRPN--------------------------------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 289 (479)
Q Consensus 242 Y~~~--------------------------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G 289 (479)
|+.. .+++|+|+||+|++||.++|+||+|||||||+++|+|+++|++|
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G 481 (1490)
T TIGR01271 402 WDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEG 481 (1490)
T ss_pred cCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 9521 13589999999999999999999999999999999999999999
Q ss_pred eEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCC
Q 011713 290 RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGEN 369 (479)
Q Consensus 290 ~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~ 369 (479)
+|.++| +|+||||+|++|++||+|||.++...++++..++++.|++.+++..+|+|++|.+|++|.+
T Consensus 482 ~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~ 548 (1490)
T TIGR01271 482 KIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGIT 548 (1490)
T ss_pred eEEECC-------------EEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCC
Confidence 999998 5999999999999999999997666777788899999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEe
Q 011713 370 WSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQR-IIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEY 448 (479)
Q Consensus 370 LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~-~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~ 448 (479)
|||||||||+||||++++|+|+|||||||+||+++++.+.+ .+....+++|+|+|||+++.++.||+|++|++|+|++.
T Consensus 549 LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~ 628 (1490)
T TIGR01271 549 LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFY 628 (1490)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999987 46777789999999999999999999999999999999
Q ss_pred cChhhhhccCchHHHHHH
Q 011713 449 DLPSNLMKTNSAFSKLVA 466 (479)
Q Consensus 449 G~~~eLl~~~g~y~~l~~ 466 (479)
|+|+++.+.++.|.+.+.
T Consensus 629 g~~~~l~~~~~~~~~~~~ 646 (1490)
T TIGR01271 629 GTFSELQAKRPDFSSLLL 646 (1490)
T ss_pred cCHHHHHhcChHHHHHHh
Confidence 999999988777877764
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.1e-62 Score=571.58 Aligned_cols=446 Identities=19% Similarity=0.268 Sum_probs=349.1
Q ss_pred CCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011713 7 TPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGT 86 (479)
Q Consensus 7 ~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (479)
.++|+++|.+++|++.+..++.. +..++...+.+++++++++.+..+.+++.++++++...+..+..++.....+....
T Consensus 341 ~~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~ 419 (1560)
T PTZ00243 341 MNTGRIINMMSTDVERINSFMQY-CMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAK 419 (1560)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999998754 45566666666666666665544555555555555555555555555555555556
Q ss_pred cccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q 011713 87 TKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVLLPGKHL 166 (479)
Q Consensus 87 ~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (479)
...+..+.+.|.++|+++||.+++|+.|.+++.+..+...+...+......+..........++.+++++.+.+..+.++
T Consensus 420 ~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt 499 (1560)
T PTZ00243 420 AADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELT 499 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 67778889999999999999999999999999988777766654444333333222222222222222222333457899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC---Cc-c---------CC-C----------
Q 011713 167 PGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPA---II-E---------ET-K---------- 222 (479)
Q Consensus 167 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~---~~-~---------~~-~---------- 222 (479)
++.++++++++..+..|+..++..+..+.++.+|++||.++++.++.... .. + .. .
T Consensus 500 ~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (1560)
T PTZ00243 500 PEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDV 579 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhcccccccccccccccccccccc
Confidence 99999999999889899999999999999999999999999986541100 00 0 00 0
Q ss_pred ----C---------------------------CCCCCCCccEEEEeEEEEeCC---------------------------
Q 011713 223 ----P---------------------------PASWPSHGRIELEDLKVRYRP--------------------------- 244 (479)
Q Consensus 223 ----~---------------------------~~~~~~~~~I~~~~vsf~Y~~--------------------------- 244 (479)
+ +......+.+.++|++|+++.
T Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1560)
T PTZ00243 580 TAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKT 659 (1560)
T ss_pred cccccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0 000001235778888886431
Q ss_pred -----------CCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEE
Q 011713 245 -----------NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (479)
Q Consensus 245 -----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V 313 (479)
+.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ ++|+||
T Consensus 660 ~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv 726 (1560)
T PTZ00243 660 PKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYV 726 (1560)
T ss_pred cccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEE
Confidence 12458999999999999999999999999999999999999999999863 479999
Q ss_pred cCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEE
Q 011713 314 PQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILIL 393 (479)
Q Consensus 314 ~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliL 393 (479)
||+|++|++|++|||.++...+++++.++++.|+++++++.+|+|++|.+|++|.+||||||||++||||++++|+||||
T Consensus 727 ~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illL 806 (1560)
T PTZ00243 727 PQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLL 806 (1560)
T ss_pred eCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999987665667788999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHH-HHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHH
Q 011713 394 DEATASIDSATDAILQR-IIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAE 467 (479)
Q Consensus 394 DE~TSaLD~~te~~i~~-~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~ 467 (479)
|||||+||+.+++.+.+ .+....+++|+|+|||+++.++.||+|++|++|+|+++|+|+++++. +.|.++...
T Consensus 807 DEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~-~~~~~~~~~ 880 (1560)
T PTZ00243 807 DDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT-SLYATLAAE 880 (1560)
T ss_pred cCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC-hHHHHHHHh
Confidence 99999999999777765 44455578999999999999999999999999999999999999875 468777654
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.5e-61 Score=469.53 Aligned_cols=237 Identities=36% Similarity=0.660 Sum_probs=225.4
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccc
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i 310 (479)
+.|+|+||+|+|+++.+++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|++||.++..++..++|+.|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 3599999999997655679999999999999999999999999999999999998 799999999999999999999999
Q ss_pred eEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCE
Q 011713 311 SIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 390 (479)
Q Consensus 311 ~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~i 390 (479)
+||||+|.+|++|+++|+.+....++++++++++.+++.+++.++|+||+|.++|+|.+||||||||++||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999976555678999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHH
Q 011713 391 LILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEY 468 (479)
Q Consensus 391 liLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~ 468 (479)
|||||||++||+.+.+.+++.|++..+++|+|+||||+++++.||||++|++|+|++.|+|++|++.++.|++++.+.
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 237 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPS 237 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhc
Confidence 999999999999999999999998888999999999999999999999999999999999999999888889888654
No 48
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.4e-57 Score=402.50 Aligned_cols=214 Identities=28% Similarity=0.459 Sum_probs=193.4
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecC-CCCHHHHhccc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC-SMGLKDLRTKL 310 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~-~~~~~~lr~~i 310 (479)
-|+++||+.+|++. .||+|||++|++||.++|+||||||||||+++|.++-+|++|+|.+||.++. ..+...+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 38999999999743 4999999999999999999999999999999999999999999999998764 33788999999
Q ss_pred eEEcCCCccccc-cHHhhcCCCC----CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 011713 311 SIIPQEPTLFRG-SVRTNLDPLG----MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (479)
Q Consensus 311 ~~V~Q~~~lF~g-Ti~eNi~~~~----~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiA 381 (479)
|+|+|+..||+- |+.||+...+ ..+ ++.-.+.++++|+.+-.+..| .+|||||+||+|||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHHH
Confidence 999999999976 9999997543 223 344556788999999999998 68999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhccC
Q 011713 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 382 RAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
|||.-+|+++++|||||||||+.-..+.+.++++. .|.|.|+|||.+...+. ||||+.||+|+|+|+|+++++..+.
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 99999999999999999999999999999998876 47899999999999988 8999999999999999999999753
No 49
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-56 Score=443.41 Aligned_cols=226 Identities=21% Similarity=0.343 Sum_probs=200.8
Q ss_pred CCCCCccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEECCeecC-
Q 011713 226 SWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDIC- 299 (479)
Q Consensus 226 ~~~~~~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~-----p~~G~I~i~g~~i~- 299 (479)
.|+..+.|+|+||+|+|++..+++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.
T Consensus 74 ~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 74 DFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 356667899999999997555579999999999999999999999999999999999997 57999999999997
Q ss_pred -CCCHHHHhccceEEcCCCccccccHHhhcCCCC---CCCHHH-----HHHHHHHccHHHHHHhCCccccccccCCCCCC
Q 011713 300 -SMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MYSDNE-----IWEAMEKCQLKATISRLPMLLDSSVSDEGENW 370 (479)
Q Consensus 300 -~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~---~~~~~~-----i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~L 370 (479)
..+...+|+.++||||+|++|++|++|||.++. ..++++ +.++++.+++ ++++++.++++|.+|
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~L 226 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNAL 226 (329)
T ss_pred cccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccC
Confidence 445678899999999999999999999998532 234443 3555666664 445678899999999
Q ss_pred ChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCEEEEec
Q 011713 371 SVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGELVEYD 449 (479)
Q Consensus 371 SgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G 449 (479)
|||||||++||||++++|+|||||||||+||+.+.+.+++.|+++.+++|+|+|||++.++.. ||||+||++|+|+|.|
T Consensus 227 SgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999999889999999999999987 9999999999999999
Q ss_pred ChhhhhccC
Q 011713 450 LPSNLMKTN 458 (479)
Q Consensus 450 ~~~eLl~~~ 458 (479)
+++++....
T Consensus 307 ~~~~l~~~~ 315 (329)
T PRK14257 307 ETKTIFIHP 315 (329)
T ss_pred CHHHHhcCC
Confidence 999998643
No 50
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.4e-54 Score=417.75 Aligned_cols=239 Identities=51% Similarity=0.822 Sum_probs=221.9
Q ss_pred CCccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhc
Q 011713 229 SHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT 308 (479)
Q Consensus 229 ~~~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~ 308 (479)
..+.|+++|++++|++..+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++.+.+...+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 35689999999999754346999999999999999999999999999999999999999999999999999999889999
Q ss_pred cceEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 011713 309 KLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (479)
Q Consensus 309 ~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p 388 (479)
.++||+|++.+|++|++||+.+......++++++++.+++.+++..+|.|+++.+++.+..||||||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999754334567788999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhcc-CchHHHHHHH
Q 011713 389 RILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKT-NSAFSKLVAE 467 (479)
Q Consensus 389 ~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~-~g~y~~l~~~ 467 (479)
++|||||||++||+.++..+.+.+++..+++|+|++||+++.+..||+|++|++|++++.|+++++++. ++.|++++..
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 255 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRT 255 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHhc
Confidence 999999999999999999999999988778999999999999999999999999999999999999874 5778887764
No 51
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.8e-54 Score=414.15 Aligned_cols=234 Identities=36% Similarity=0.582 Sum_probs=218.2
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++||+++|+...+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57899999997544569999999999999999999999999999999999999999999999999988888889999999
Q ss_pred EcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEE
Q 011713 313 IPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 391 (479)
Q Consensus 313 V~Q~~~lF~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~il 391 (479)
+||++.+|+.|++||+.+.. ..+.+++.++++..++.+++..+|.|+++.+...+.+||||||||++||||++++|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999997643 34566778888889999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHH
Q 011713 392 ILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVA 466 (479)
Q Consensus 392 iLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~ 466 (479)
||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++++++..+.|+.+++
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 235 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQ 235 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHHh
Confidence 999999999999999999999998778999999999999988999999999999999999999998888888765
No 52
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-54 Score=406.61 Aligned_cols=223 Identities=27% Similarity=0.437 Sum_probs=196.7
Q ss_pred EEEEeEEEEeCCC---CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCH---HHH
Q 011713 233 IELEDLKVRYRPN---TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KDL 306 (479)
Q Consensus 233 I~~~~vsf~Y~~~---~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~---~~l 306 (479)
|+|+|||+.|+.. ...+|+||||+|++||+.+|||+||||||||++++.++-.|++|+|.+||.|+..++. ..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999752 2458999999999999999999999999999999999999999999999988887765 456
Q ss_pred hccceEEcCCCcccc-ccHHhhcCCC-C--CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHH
Q 011713 307 RTKLSIIPQEPTLFR-GSVRTNLDPL-G--MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (479)
Q Consensus 307 r~~i~~V~Q~~~lF~-gTi~eNi~~~-~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRl 378 (479)
|++||+++|++.|++ -|+.+|+.+- . ..+ .+++.+.|+.+||.|+..+.| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 889999999999998 6999999742 1 233 356778899999999988888 78999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhh
Q 011713 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 379 aiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl 455 (479)
+|||||..+|+||+.|||||||||+|-+.|.+.|++.- -+-|+++|||-++.++. |||+.||++|+|+|+|+-.++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999987643 48899999999999988 9999999999999999999998
Q ss_pred ccC--chHHHHHH
Q 011713 456 KTN--SAFSKLVA 466 (479)
Q Consensus 456 ~~~--g~y~~l~~ 466 (479)
.+. ..-++++.
T Consensus 231 ~~Pk~~~t~~fi~ 243 (339)
T COG1135 231 ANPKHAITQEFIG 243 (339)
T ss_pred cCcchHHHHHHHH
Confidence 743 33444443
No 53
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-54 Score=386.03 Aligned_cols=218 Identities=25% Similarity=0.412 Sum_probs=198.4
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCC-----ceEEECCeecCC--CCHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN-----GRILIDGLDICS--MGLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~-----G~I~i~g~~i~~--~~~~ 304 (479)
.++++|+++.|.. ..+|+|||++|++++.+|++|||||||||+++.+-|+.+... |+|.++|.||.+ ++..
T Consensus 7 ~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 7 AIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred eeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 5899999999974 349999999999999999999999999999999999999886 999999999987 5788
Q ss_pred HHhccceEEcCCCccccccHHhhcCCCC---C----CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHH
Q 011713 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---M----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~gTi~eNi~~~~---~----~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
.+|++||+|+|.|.-|+.||.||+.++. . .-||.++++++.|.|++-+.. .+.+.+..|||||+||
T Consensus 85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQR 157 (253)
T COG1117 85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQR 157 (253)
T ss_pred HHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHHH
Confidence 9999999999999999999999998753 1 124668999999999998764 3456678899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhc
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
|||||||.-+|+||+||||||||||.+..+|.+.|.++.++-|+|+|||.+....+ +|+...+-.|+++|.|+.+++..
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~ 237 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFT 237 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhc
Confidence 99999999999999999999999999999999999999999999999999997655 89999999999999999999886
Q ss_pred cC
Q 011713 457 TN 458 (479)
Q Consensus 457 ~~ 458 (479)
+.
T Consensus 238 ~P 239 (253)
T COG1117 238 NP 239 (253)
T ss_pred Cc
Confidence 54
No 54
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-54 Score=394.46 Aligned_cols=213 Identities=31% Similarity=0.501 Sum_probs=194.4
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+|+|||++|.+ +.+++|+||+|++||.++++|||||||||+++++.|+++|++|+|++||.++++++...||++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 799999999973 459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHH--HHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 011713 313 IPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLK--ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (479)
Q Consensus 313 V~Q~~~lF~g-Ti~eNi~~~~---~~~----~~~i~~a~~~a~l~--~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiAR 382 (479)
|-|..-||+- ||.|||..-+ ..+ ++++.+.++.++|+ +|..+.| ..|||||+||+.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHHH
Confidence 9999999976 9999997432 223 45677888999995 5888888 679999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchh-hhcCCEEEEEeCCEEEEecChhhhhccC
Q 011713 383 VLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPT-ITDSDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 383 All~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~-i~~~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
||..+|+|+++|||+|||||.+...+++-+.++.+ ++|+|+|||++.. ++.+|||.+|++|+|++.|+|++++++.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 99999999999999999999999999998876543 8999999999985 6779999999999999999999999854
No 55
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4e-53 Score=400.52 Aligned_cols=219 Identities=57% Similarity=0.971 Sum_probs=207.8
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++|++++|++..+++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.++|.++.+++...+|+.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 58999999999754456999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEE
Q 011713 312 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 391 (479)
Q Consensus 312 ~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~il 391 (479)
|++|++.+|++|++||+.+....+.+++.++++..++.+++.++|.|+++.+++....||||||||++||||++++|+++
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll 161 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKIL 161 (221)
T ss_pred EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999865556778899999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecC
Q 011713 392 ILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDL 450 (479)
Q Consensus 392 iLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~ 450 (479)
||||||++||+.+.+.+.+.|++..+++|+|++||++..+..||++++|++|++++.|+
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 162 VLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999877899999999999999999999999999999876
No 56
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-52 Score=401.19 Aligned_cols=232 Identities=33% Similarity=0.538 Sum_probs=215.4
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++|++++|++...++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57899999997543369999999999999999999999999999999999999999999999999988888889999999
Q ss_pred EcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEE
Q 011713 313 IPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 391 (479)
Q Consensus 313 V~Q~~~lF~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~il 391 (479)
++|++.+|+.|++||+.+.. ..+.+++.++++..++.++++.+|.|+++.++.....||||||||++||||++++|+++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998643 34567788888999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHH
Q 011713 392 ILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKL 464 (479)
Q Consensus 392 iLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l 464 (479)
||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++....+.|+.+
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchhhh
Confidence 9999999999999999999999988889999999999999999999999999999999999998887776654
No 57
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-52 Score=400.80 Aligned_cols=234 Identities=35% Similarity=0.577 Sum_probs=217.1
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++|++++|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999643 359999999999999999999999999999999999999999999999999999888899999999
Q ss_pred EcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEE
Q 011713 313 IPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 391 (479)
Q Consensus 313 V~Q~~~lF~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~il 391 (479)
++|++.+|++|++||+.+.. ..+++++.++++.+++.+++..+|.|+++.+......||||||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997642 45667788889999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHH
Q 011713 392 ILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAE 467 (479)
Q Consensus 392 iLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~ 467 (479)
||||||++||+.+...+.+.|.+..+++|+|++||+++.+..||++++|++|++++.|+.+++....+.|+.++.+
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~~~ 235 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWKA 235 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHHhc
Confidence 9999999999999999999999887789999999999999999999999999999999999998877777776643
No 58
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-52 Score=397.52 Aligned_cols=226 Identities=37% Similarity=0.623 Sum_probs=210.9
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++|++|+|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.++
T Consensus 2 ~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 2 EIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred eEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 58999999999643 35999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCE
Q 011713 312 IIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 390 (479)
Q Consensus 312 ~V~Q~~~lF~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~i 390 (479)
|++|++.+|++|++||+.+.. ....+++.++++..++.++++.+|.|+++.++.....||||||||++|||||+++|++
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999998643 3456788889999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccC
Q 011713 391 LILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 391 liLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|+.++++++.
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~~ 228 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhhC
Confidence 99999999999999999999999987789999999999999999999999999999999998887653
No 59
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.2e-51 Score=394.70 Aligned_cols=233 Identities=36% Similarity=0.622 Sum_probs=213.6
Q ss_pred EEEEeEEEEeCCC-CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 233 IELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 233 I~~~~vsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
|+++|++++|++. ..++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4789999999753 246999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCE
Q 011713 312 IIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 390 (479)
Q Consensus 312 ~V~Q~~~lF~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~i 390 (479)
|++|++.+|+.|++||+.+.. ....+++.+.++..++.+++..+|.|+++.+.....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999997642 3456677888888999999999999999999998999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHH
Q 011713 391 LILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLV 465 (479)
Q Consensus 391 liLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~ 465 (479)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+.+++....+.++.++
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 235 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLV 235 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHHHh
Confidence 999999999999999999999998777899999999999999999999999999999999999988766666554
No 60
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=4e-51 Score=386.56 Aligned_cols=218 Identities=33% Similarity=0.544 Sum_probs=202.2
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++|++++|++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 58999999999653346999999999999999999999999999999999999999999999999998888778889999
Q ss_pred EEcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCE
Q 011713 312 IIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 390 (479)
Q Consensus 312 ~V~Q~~~lF~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~i 390 (479)
|++|++.+|..|++||+.+.. ..+.+++.++++..++.+.+..+|.|++|.+.+....||||||||++||||++.+|++
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999997542 3456678889999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEec
Q 011713 391 LILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYD 449 (479)
Q Consensus 391 liLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G 449 (479)
|||||||++||+.+...+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 162 LLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999987678999999999998889999999999998764
No 61
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.5e-51 Score=410.35 Aligned_cols=223 Identities=26% Similarity=0.425 Sum_probs=193.9
Q ss_pred EEEEeEEEEeCCC--CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHH---Hh
Q 011713 233 IELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LR 307 (479)
Q Consensus 233 I~~~~vsf~Y~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~---lr 307 (479)
|+++||+++|+.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred ccceEEcCCCcccc-ccHHhhcCCC---CCCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHH
Q 011713 308 TKLSIIPQEPTLFR-GSVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 308 ~~i~~V~Q~~~lF~-gTi~eNi~~~---~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRla 379 (479)
++|+||||++.+|. .|++||+.+. ...+ ++++.++++.+++.++..+.| ..||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999996 6999999742 1122 345678888888877766554 579999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhc
Q 011713 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 380 iARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
|||||+.+|++||||||||+||+.+...+.+.|++..+ +.|+|+|||+++.++. ||+|++|++|+|++.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998753 7899999999999865 99999999999999999999986
Q ss_pred c--CchHHHHHH
Q 011713 457 T--NSAFSKLVA 466 (479)
Q Consensus 457 ~--~g~y~~l~~ 466 (479)
. +..+++++.
T Consensus 231 ~p~~~~~~~~~~ 242 (343)
T TIGR02314 231 HPKTPLAQKFIR 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 3 334455544
No 62
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-51 Score=404.60 Aligned_cols=220 Identities=23% Similarity=0.369 Sum_probs=186.2
Q ss_pred ccEEEEeEEEEeCCC---CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCC------
Q 011713 231 GRIELEDLKVRYRPN---TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM------ 301 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~---~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~------ 301 (479)
..|+++||+|+|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 359999999999743 23599999999999999999999999999999999999999999999999998753
Q ss_pred ----------CHHHHhccceEEcCCC--ccccccHHhhcCCCC---CCCHHHHHHHHHHccHHHHHHhCCcccc-ccccC
Q 011713 302 ----------GLKDLRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLD-SSVSD 365 (479)
Q Consensus 302 ----------~~~~lr~~i~~V~Q~~--~lF~gTi~eNi~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~G~~-T~vge 365 (479)
+...+|++|+||+|+| .+|++|++|||.++. ..+.++..+ . ..++++.+ |++ .....
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~--~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---L--AKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---H--HHHHHHHc--CCChhHhcC
Confidence 3567899999999998 799999999997542 233333221 1 12344443 443 34566
Q ss_pred CCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhh-hcCCEEEEEeCC
Q 011713 366 EGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTI-TDSDMVMVLSYG 443 (479)
Q Consensus 366 ~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~~D~I~vl~~G 443 (479)
.+.+||||||||++|||||+++|++||||||||+||+.+++.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 778999999999999999999999999999999999999999999998763 589999999999976 569999999999
Q ss_pred EEEEecChhhhhcc
Q 011713 444 ELVEYDLPSNLMKT 457 (479)
Q Consensus 444 ~Ive~G~~~eLl~~ 457 (479)
+|++.|+|+++++.
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999987653
No 63
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=9.6e-51 Score=374.48 Aligned_cols=204 Identities=30% Similarity=0.444 Sum_probs=178.3
Q ss_pred EEEEeEEEEeCCCC--CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHH---H-
Q 011713 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---L- 306 (479)
Q Consensus 233 I~~~~vsf~Y~~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~---l- 306 (479)
++++||+..|.... ..+|+++||+|++||.|||+||||||||||+++|.++-.|++|.|.++|.|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996432 35899999999999999999999999999999999999999999999999999998543 3
Q ss_pred hccceEEcCCCccccc-cHHhhcCC----CC-CC--CHHHHHHHHHHccHHHHHH-hCCccccccccCCCCCCChhHHHH
Q 011713 307 RTKLSIIPQEPTLFRG-SVRTNLDP----LG-MY--SDNEIWEAMEKCQLKATIS-RLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 307 r~~i~~V~Q~~~lF~g-Ti~eNi~~----~~-~~--~~~~i~~a~~~a~l~~~i~-~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
|++||||+|+..|++. |++||+.+ .. .. ..+.+.+.++..|+.+... +.| ..||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 5679999999999876 99999962 22 11 2456677777778876655 555 6899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhcCCEEEEEeCCEEEE
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITDSDMVMVLSYGELVE 447 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive 447 (479)
+||||||+.+|+|++.||||++||++|.+.|++.+++.. .++|+|+|||+......|||++.|++|++.+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999999874 3789999999999999999999999999544
No 64
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-51 Score=390.07 Aligned_cols=217 Identities=29% Similarity=0.463 Sum_probs=187.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCH---HHHhcc
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KDLRTK 309 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~---~~lr~~ 309 (479)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|+.
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 478999999963 359999999999999999999999999999999999999999999999999988764 568899
Q ss_pred ceEEcCCCccccc-cHHhhcCCCC----CCCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 011713 310 LSIIPQEPTLFRG-SVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 380 (479)
Q Consensus 310 i~~V~Q~~~lF~g-Ti~eNi~~~~----~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlai 380 (479)
|+||||++.+|.+ |++||+.+.. ..+. +++.++++..++.++..+.| ..||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP-----------AELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHH
Confidence 9999999999986 9999996421 1232 34556677766655443332 5799999999999
Q ss_pred HHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhcc
Q 011713 381 GRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 381 ARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
|||++++|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999999988753 7899999999998765 999999999999999999999876
Q ss_pred CchHH
Q 011713 458 NSAFS 462 (479)
Q Consensus 458 ~g~y~ 462 (479)
...|.
T Consensus 228 ~~~~~ 232 (235)
T cd03261 228 DDPLV 232 (235)
T ss_pred CChhh
Confidence 55443
No 65
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.4e-51 Score=384.06 Aligned_cols=214 Identities=29% Similarity=0.459 Sum_probs=192.2
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.++++|++|+|+ .+++|+|+||+|++||.++|+||||||||||+|+|+|+.+|.+|+|++||.++.+++.+++-+++|
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 378999999997 356999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCc-cccccHHhhcCCCC-----------CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHH
Q 011713 312 IIPQEPT-LFRGSVRTNLDPLG-----------MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 312 ~V~Q~~~-lF~gTi~eNi~~~~-----------~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRla 379 (479)
||||++. -|.-|++|=+.++. +.+++.+.+|++.+++.++..+. -..||||||||+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHHH
Confidence 9999965 56779999885442 11334688899999999987653 2579999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchh-hhcCCEEEEEeCCEEEEecChhhhhc
Q 011713 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPT-ITDSDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 380 iARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~-i~~~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
|||||.++|+||+||||||+||....-++++.++++. +++|+|++.|++.. .+.||++++|++|+|+.+|+++|.+.
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999999999999999999999999876 36999999999985 57799999999999999999999886
Q ss_pred cC
Q 011713 457 TN 458 (479)
Q Consensus 457 ~~ 458 (479)
..
T Consensus 229 ~e 230 (258)
T COG1120 229 EE 230 (258)
T ss_pred HH
Confidence 53
No 66
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.8e-50 Score=378.51 Aligned_cols=207 Identities=59% Similarity=1.004 Sum_probs=185.9
Q ss_pred CCCCccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHH
Q 011713 227 WPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL 306 (479)
Q Consensus 227 ~~~~~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~l 306 (479)
||..+.|+++|++++|+....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 34456799999999997543469999999999999999999999999999999999999999999999999998888889
Q ss_pred hccceEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc
Q 011713 307 RTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (479)
Q Consensus 307 r~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~ 386 (479)
|+.|+||+|+|.+|++|++||+.+....+++++.++++ +......|||||+||++||||+++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999997544445555555443 245668899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecCh
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLP 451 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~ 451 (479)
+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999998778999999999999988999999999999998864
No 67
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-51 Score=383.70 Aligned_cols=215 Identities=32% Similarity=0.490 Sum_probs=197.3
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecC-CCCHHHHhccc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC-SMGLKDLRTKL 310 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~-~~~~~~lr~~i 310 (479)
-++++|++|+|++. .++|+|+||+|++||.++|+|+||||||||+++|.|++.|++|.|.+||.++. +.+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 38999999999876 67999999999999999999999999999999999999999999999999998 48899999999
Q ss_pred eEEcCCC--ccccccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 011713 311 SIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (479)
Q Consensus 311 ~~V~Q~~--~lF~gTi~eNi~~~~---~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiA 381 (479)
|+|+|+| .+|..||.|.+.++. ..+. +++.++++.+++.++.++.| .+||||||||+|||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhh
Confidence 9999999 799999999998753 2343 45778899999998877666 68999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhccC
Q 011713 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 382 RAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
.+|..+|++||||||||+||+...+.+.+.++++.+ ++|+|+|||++..+.. |||++||++|+++.+|+++++.+..
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 999999999999999999999999999999999865 4799999999999877 9999999999999999999988753
No 68
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.7e-51 Score=396.62 Aligned_cols=211 Identities=26% Similarity=0.425 Sum_probs=192.0
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++||+.+|++.. +|+|+||+|+.||.++|+||||||||||+++|+||.+|++|+|+|||.+++++++++ +.||
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 589999999997543 999999999999999999999999999999999999999999999999999999865 8899
Q ss_pred EEcCCCccccc-cHHhhcCCCC---C----CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 011713 312 IIPQEPTLFRG-SVRTNLDPLG---M----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~~---~----~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA 383 (479)
+|+|+..||+- ||+|||.++- . .-++++.++++..++.+.+++.| ..||||||||+|||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHH
Confidence 99999999987 9999998642 1 23678899999999999999998 6799999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhhcc
Q 011713 384 LLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 384 ll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
|+++|++++||||+|+||+.....+..-|+++.+ +.|+|.|||+...+ ..+|||.||++|+|.+.|++.|+..+
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 9999999999999999999998888887777543 68999999998765 55999999999999999999999864
No 69
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=7.3e-51 Score=353.45 Aligned_cols=210 Identities=26% Similarity=0.409 Sum_probs=188.4
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|.+++|.|+|... + =.++++|++||+|||+||||||||||+|+++||..|.+|+|.|||+|....++. ++-+++
T Consensus 2 l~L~~V~~~y~~~-~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGHL-P---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCcc-e---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 5788999999643 2 268999999999999999999999999999999999999999999999887764 567999
Q ss_pred EcCCCccccc-cHHhhcCCCC-------CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 313 IPQEPTLFRG-SVRTNLDPLG-------MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 313 V~Q~~~lF~g-Ti~eNi~~~~-------~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
++||.-||.- ||++|+.++- ....+++..|+.++|+..|.++|| ..||||||||+||||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHHH
Confidence 9999999976 9999997542 134678999999999999999999 57999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhccCc
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKTNS 459 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~~g 459 (479)
+|+-|||+||||.|||||.-...+...+.++. ++.|+++|||.++.++. +|+++++++|||.++|+-+++++..+
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 99999999999999999999888888887765 47899999999998765 99999999999999999999998654
No 70
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.5e-50 Score=367.83 Aligned_cols=221 Identities=27% Similarity=0.491 Sum_probs=193.9
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHH---HHhc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLRT 308 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~---~lr~ 308 (479)
.|++++|+|+|.+ +.||+||||+|++||.++|+|+||||||||++++.|+..|++|+|.++|.|+.+++.+ .+|+
T Consensus 8 ~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 8 LIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred eEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 5999999999964 4599999999999999999999999999999999999999999999999999999865 5699
Q ss_pred cceEEcCCCccccc-cHHhhcCC-CC---CCCHHHHHH----HHHHccHHHH-HHhCCccccccccCCCCCCChhHHHHH
Q 011713 309 KLSIIPQEPTLFRG-SVRTNLDP-LG---MYSDNEIWE----AMEKCQLKAT-ISRLPMLLDSSVSDEGENWSVGQRQLF 378 (479)
Q Consensus 309 ~i~~V~Q~~~lF~g-Ti~eNi~~-~~---~~~~~~i~~----a~~~a~l~~~-i~~lp~G~~T~vge~G~~LSgGQrQRl 378 (479)
++|+++|.--||+. ||+||+.+ .. ..+++.+++ -++.+||... .+.+| ..||||.+.|.
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KRv 154 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKRV 154 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHHH
Confidence 99999999999988 99999975 12 345555444 4677888777 56666 68999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhh
Q 011713 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 379 aiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl 455 (479)
|||||+.-||+|+++|||||+|||.+...+-+.|+++.+ +.|+|+|||+++++.. ||||+++.+|+|+..|+++||.
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELL 234 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999888888877543 7899999999998866 8999999999999999999999
Q ss_pred ccC-chHHHHH
Q 011713 456 KTN-SAFSKLV 465 (479)
Q Consensus 456 ~~~-g~y~~l~ 465 (479)
+.+ .+.++++
T Consensus 235 ~sd~P~v~qf~ 245 (263)
T COG1127 235 ASDDPWVRQFF 245 (263)
T ss_pred hCCCHHHHHHh
Confidence 854 4444443
No 71
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-50 Score=393.19 Aligned_cols=216 Identities=27% Similarity=0.424 Sum_probs=193.1
Q ss_pred cEEEEeEEEEeCCC-CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccc
Q 011713 232 RIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i 310 (479)
.|+++||+++|++. .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999743 24599999999999999999999999999999999999999999999999999988888899999
Q ss_pred eEEcCCCc--cccccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 011713 311 SIIPQEPT--LFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (479)
Q Consensus 311 ~~V~Q~~~--lF~gTi~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiA 381 (479)
+||+|+|. ++..|++|||.+.. ..+ ++++.++++.+++.++....| ..||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999983 56779999997531 122 356788889989887776655 58999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccC
Q 011713 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 382 RAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
|||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||++..+..||+|++|++|++++.|+++++.+..
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcCh
Confidence 999999999999999999999999999999988753 79999999999999889999999999999999999987653
No 72
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-50 Score=368.83 Aligned_cols=222 Identities=27% Similarity=0.454 Sum_probs=189.8
Q ss_pred cEEEEeEEEEeCCCC--CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCC-CHHHHhc
Q 011713 232 RIELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM-GLKDLRT 308 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~-~~~~lr~ 308 (479)
.++++|+++.|+... .++|+||||+|.+||++||||+||||||||+++|+|+.+|++|+|+++|.++... ..+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999997543 1499999999999999999999999999999999999999999999999877654 2346788
Q ss_pred cceEEcCCCcc-cc--ccHHhhcC----CCC-CCCHHHHHHHHHHccHH-HHHHhCCccccccccCCCCCCChhHHHHHH
Q 011713 309 KLSIIPQEPTL-FR--GSVRTNLD----PLG-MYSDNEIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 309 ~i~~V~Q~~~l-F~--gTi~eNi~----~~~-~~~~~~i~~a~~~a~l~-~~i~~lp~G~~T~vge~G~~LSgGQrQRla 379 (479)
.|-+|+|||+- ++ -||++-|. ..+ +-.+++++++++.+|+. +|..+.| ..||||||||+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 99999999973 32 36666553 211 23456799999999995 5666777 579999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCc--EEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhc
Q 011713 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGS--TVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 380 iARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~--TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
|||||.-+|++||||||||+||+-....|.+.+.++.+++ |.|+|||+++.+.+ ||||+||++|+|+|.++-+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999998877655 99999999999987 99999999999999999999987
Q ss_pred c-CchHHHH
Q 011713 457 T-NSAFSKL 464 (479)
Q Consensus 457 ~-~g~y~~l 464 (479)
. .-.|.+.
T Consensus 232 ~~~h~ytr~ 240 (252)
T COG1124 232 HPSHPYTRE 240 (252)
T ss_pred CCccHHHHH
Confidence 5 4455443
No 73
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2.5e-50 Score=382.99 Aligned_cols=211 Identities=31% Similarity=0.482 Sum_probs=185.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccC-----CCCCceEEECCeecCCCC--HHH
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV-----EPENGRILIDGLDICSMG--LKD 305 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~-----~p~~G~I~i~g~~i~~~~--~~~ 305 (479)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|.++.+++ ...
T Consensus 1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 578999999964 35999999999999999999999999999999999999 999999999999998876 567
Q ss_pred HhccceEEcCCCccccccHHhhcCCCC---CC-----CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHH
Q 011713 306 LRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 306 lr~~i~~V~Q~~~lF~gTi~eNi~~~~---~~-----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
+|++++|+||++.+|..|++||+.+.. .. .++++.++++..++.+...+.++ +..||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 889999999999999889999997421 11 13466777888887665554322 46899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhh
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eL 454 (479)
++||||++++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 9999999999999999999999999999999999998866689999999999876 5999999999999999998764
No 74
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=9e-50 Score=378.86 Aligned_cols=216 Identities=31% Similarity=0.510 Sum_probs=198.0
Q ss_pred CccEEEEeEEEEeCCC-CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhc
Q 011713 230 HGRIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT 308 (479)
Q Consensus 230 ~~~I~~~~vsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~ 308 (479)
.+.|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4569999999999753 235999999999999999999999999999999999999999999999999998888888889
Q ss_pred cceEEcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcC
Q 011713 309 KLSIIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (479)
Q Consensus 309 ~i~~V~Q~~~lF~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~ 387 (479)
.++|++|++.+|++|++||+.+.. ..+.+++.+..+..++.++++.+|.|+++.+......||||||||++||||++++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999997532 3344566667777889999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEE
Q 011713 388 NRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGEL 445 (479)
Q Consensus 388 p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~I 445 (479)
|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999998778999999999999989999999999975
No 75
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-50 Score=400.62 Aligned_cols=214 Identities=28% Similarity=0.439 Sum_probs=186.1
Q ss_pred EEEEeEEEEeCC--CCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHH---Hh
Q 011713 233 IELEDLKVRYRP--NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LR 307 (479)
Q Consensus 233 I~~~~vsf~Y~~--~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~---lr 307 (479)
|+++||+|+|+. ...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999972 2346999999999999999999999999999999999999999999999999999887654 47
Q ss_pred ccceEEcCCCcccc-ccHHhhcCCC---CCCCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHH
Q 011713 308 TKLSIIPQEPTLFR-GSVRTNLDPL---GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 308 ~~i~~V~Q~~~lF~-gTi~eNi~~~---~~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRla 379 (479)
++|+||||++.+|. .|++||+.+. ...+. +++.++++..++.++..+. ...||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRY-----------PAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 89999999999987 6999999642 12222 3456666766665554433 3579999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhc
Q 011713 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 380 iARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998743 7899999999999865 99999999999999999999986
Q ss_pred c
Q 011713 457 T 457 (479)
Q Consensus 457 ~ 457 (479)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 4
No 76
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-49 Score=383.10 Aligned_cols=217 Identities=20% Similarity=0.389 Sum_probs=191.7
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCceEEECCeecCCCCHHHHhc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE---PENGRILIDGLDICSMGLKDLRT 308 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~---p~~G~I~i~g~~i~~~~~~~lr~ 308 (479)
.|+++||++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 3789999999964 459999999999999999999999999999999999985 69999999999999888888899
Q ss_pred cceEEcCCCccccccHHhhcCCCC---C------CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHH
Q 011713 309 KLSIIPQEPTLFRGSVRTNLDPLG---M------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 309 ~i~~V~Q~~~lF~gTi~eNi~~~~---~------~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRla 379 (479)
.++|+||++.+|+.|++||+.+.. . ..++++.++++.+++.+++..+ ....+.+||||||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHHH
Confidence 999999999999999999996531 1 1223566778888876655432 34456789999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhcc
Q 011713 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 380 iARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
||||++++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|++++++..
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999999998877899999999999875 5999999999999999999999763
No 77
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=7.3e-49 Score=382.17 Aligned_cols=219 Identities=23% Similarity=0.361 Sum_probs=197.2
Q ss_pred CccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhcc
Q 011713 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (479)
Q Consensus 230 ~~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~ 309 (479)
.+.|+++||++.. +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 37 ~~~l~i~nls~~~----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLVG----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEec----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 3469999999952 3599999999999999999999999999999999999999999999998 4
Q ss_pred ceEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCC
Q 011713 310 LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389 (479)
Q Consensus 310 i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~ 389 (479)
|+|++|++.+|++|++||+.+.....+.++.++++.+++.+++..+|.+++|.+++.+..||||||||++||||++++|+
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997643334556777888889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHH-HHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHH
Q 011713 390 ILILDEATASIDSATDAILQRII-REEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLV 465 (479)
Q Consensus 390 iliLDE~TSaLD~~te~~i~~~l-~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~ 465 (479)
+|||||||++||+.+...+.+.+ +.+.+++|+|++||+++.+..||+|++|++|++++.|+++++.+....|.+.+
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 256 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKL 256 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHHHHHH
Confidence 99999999999999998888754 55566899999999999999999999999999999999999987655666544
No 78
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.9e-50 Score=372.87 Aligned_cols=210 Identities=26% Similarity=0.416 Sum_probs=185.6
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++|++|+|... ++|+||||++++|+.+||+||||||||||+|+++|+.+|++|+|.++|.+.++... +.+||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 49999999999754 49999999999999999999999999999999999999999999999988776543 57899
Q ss_pred EEcCCC---ccccccHHhhcCCCC-----------CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHH
Q 011713 312 IIPQEP---TLFRGSVRTNLDPLG-----------MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 312 ~V~Q~~---~lF~gTi~eNi~~~~-----------~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
||||.. +-|+-||+|=+.++. ..+.+++.+|++.+|+.++..+ ++| .|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-------~i~----~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-------QIG----ELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-------ccc----ccCcHHHHH
Confidence 999965 458999999886531 1235899999999999988654 455 599999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhh
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl 455 (479)
+.|||||+.+|++|+|||||+++|+.++..|.+.|.++.+ |||+++|+|+++.+.. +|+|+.| |++++..|++++.+
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhcc
Confidence 9999999999999999999999999999999999998765 8999999999998765 9999999 57788999999988
Q ss_pred ccC
Q 011713 456 KTN 458 (479)
Q Consensus 456 ~~~ 458 (479)
...
T Consensus 227 ~~~ 229 (254)
T COG1121 227 TEE 229 (254)
T ss_pred CHH
Confidence 653
No 79
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-49 Score=388.66 Aligned_cols=216 Identities=28% Similarity=0.438 Sum_probs=194.0
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
-|+++||+++|+...+++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|++||.++.+.+...+++.|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 38999999999754456999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcCCC--ccccccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 011713 312 IIPQEP--TLFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (479)
Q Consensus 312 ~V~Q~~--~lF~gTi~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiAR 382 (479)
|++|++ .+++.|++|||.+.. ..+ ++++.++++..++.+++...| ..||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 467789999997531 122 245778888889888877766 479999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccC
Q 011713 383 VLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 383 All~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+..
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSG 231 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCH
Confidence 99999999999999999999999999999998764 78999999999999899999999999999999999987653
No 80
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1e-49 Score=376.94 Aligned_cols=210 Identities=24% Similarity=0.364 Sum_probs=181.9
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++||+++|++..+++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.++|.++... ...+|++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 578999999965324699999999999999999999999999999999999999999999999998764 3677889999
Q ss_pred EcCCCccc-cccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 313 IPQEPTLF-RGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 313 V~Q~~~lF-~gTi~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
|+|++.+| ..|++||+.+.. ..+ ++++.++++..++.+... +. ...||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-------KR----ARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-------Ch----hhhCCHHHHHHHHHHHHH
Confidence 99999998 579999996421 122 244566677666654432 22 257999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhh
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eL 454 (479)
+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999999999999999999877899999999999886 4999999999999999998875
No 81
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-49 Score=387.84 Aligned_cols=212 Identities=27% Similarity=0.416 Sum_probs=189.7
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
-|+++||+|+|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++.+.+...+|+.|+
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999643 35999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEcCCC--ccccccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 011713 312 IIPQEP--TLFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (479)
Q Consensus 312 ~V~Q~~--~lF~gTi~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiAR 382 (479)
||+|+| .+|..|++||+.++. ..+ ++++.++++.+++.++..+.| ..||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999998 688899999997531 122 356778888889887776666 479999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhh
Q 011713 383 VLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 383 All~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|+++++.
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999999998874 479999999999988 569999999999999999987653
No 82
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=6.3e-50 Score=377.26 Aligned_cols=202 Identities=24% Similarity=0.401 Sum_probs=177.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHH---HHhcc
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLRTK 309 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~---~lr~~ 309 (479)
|+++||+++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999965434699999999999999999999999999999999999999999999999999876543 47889
Q ss_pred ceEEcCCCccccc-cHHhhcCCC---CC----CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 011713 310 LSIIPQEPTLFRG-SVRTNLDPL---GM----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (479)
Q Consensus 310 i~~V~Q~~~lF~g-Ti~eNi~~~---~~----~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiA 381 (479)
++|+||++.+|.. |++||+.+. .. ..++++.++++..++.++..+.| ..||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 9999999999874 999999642 11 12456788888888877766555 47999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEE
Q 011713 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGEL 445 (479)
Q Consensus 382 RAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~I 445 (479)
|||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998874 47899999999998874 999999999985
No 83
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.3e-49 Score=370.05 Aligned_cols=199 Identities=26% Similarity=0.432 Sum_probs=182.9
Q ss_pred EEEEeEEEEeCCCC---CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhcc
Q 011713 233 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (479)
Q Consensus 233 I~~~~vsf~Y~~~~---~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~ 309 (479)
|+++||+++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57999999997542 3699999999999999999999999999999999999999999999999 6
Q ss_pred ceEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCC
Q 011713 310 LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389 (479)
Q Consensus 310 i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~ 389 (479)
|+|++|+|.+|++|++||+.+....++++.+++++.+++.+++..+|.|++|.+.+....||||||||++||||++.+|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998754456677888999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHH-HHHHHC-CCcEEEEEccCchhhhcCCEEEEEeCCE
Q 011713 390 ILILDEATASIDSATDAILQR-IIREEF-PGSTVITIAHRVPTITDSDMVMVLSYGE 444 (479)
Q Consensus 390 iliLDE~TSaLD~~te~~i~~-~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl~~G~ 444 (479)
++||||||++||+++.+.+.+ .+++.. +++|+|++||+++.+..||++++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999888877 456553 4689999999999998899999999985
No 84
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.4e-50 Score=368.57 Aligned_cols=197 Identities=27% Similarity=0.390 Sum_probs=176.0
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.+++++|+.+|+. ..||+||||+|++||.|+||||||||||||+++++|+.+|++|+|.++|.++..-. ..++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~-----~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG-----PDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC-----CCEE
Confidence 4899999999975 45999999999999999999999999999999999999999999999999885543 4799
Q ss_pred EEcCCCccccc-cHHhhcCCCCC-------CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 011713 312 IIPQEPTLFRG-SVRTNLDPLGM-------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~~~-------~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA 383 (479)
||+|++.||+= |++||+.++-+ -..+.+.++++.+||.+|-++.| ..||||||||+|||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHH
Confidence 99999999985 99999975321 13457889999999999999999 6899999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchh-hhcCCEEEEEeC--CEEE
Q 011713 384 LLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPT-ITDSDMVMVLSY--GELV 446 (479)
Q Consensus 384 ll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~-i~~~D~I~vl~~--G~Iv 446 (479)
|+.+|+||+||||.+|||+.|...+++-+.+..+ ++|+++|||+.+. +.-+|||+||.+ |+|.
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 9999999999999999999999999998887653 6999999999986 456999999999 5553
No 85
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-49 Score=377.62 Aligned_cols=221 Identities=30% Similarity=0.471 Sum_probs=190.7
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999964 35999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEcCCCccccccHHhhcCCCC---CCCHHHHHHHHHHccHH-HHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcC
Q 011713 312 IIPQEPTLFRGSVRTNLDPLG---MYSDNEIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (479)
Q Consensus 312 ~V~Q~~~lF~gTi~eNi~~~~---~~~~~~i~~a~~~a~l~-~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~ 387 (479)
|+||++.+|+.|++||+.+.. ...++++.++++..++. ++. ......||||||||++||||++++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYA-----------TRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHh-----------hCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999997532 12234566666666663 222 233468999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhccC-chHHH
Q 011713 388 NRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKTN-SAFSK 463 (479)
Q Consensus 388 p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~~-g~y~~ 463 (479)
|++|||||||++||+.+...+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|++++++... ..|.+
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 229 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHH
Confidence 99999999999999999999999998864 37999999999998764 9999999999999999999998643 23544
Q ss_pred HH
Q 011713 464 LV 465 (479)
Q Consensus 464 l~ 465 (479)
.+
T Consensus 230 ~~ 231 (241)
T PRK14250 230 LF 231 (241)
T ss_pred HH
Confidence 33
No 86
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-49 Score=397.93 Aligned_cols=213 Identities=23% Similarity=0.350 Sum_probs=189.9
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++||+++|+++ .++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.++++. ++.|+
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 38999999999533 4599999999999999999999999999999999999999999999999999887764 47899
Q ss_pred EEcCCCcccc-ccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 011713 312 IIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (479)
Q Consensus 312 ~V~Q~~~lF~-gTi~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA 383 (479)
||+|++.+|. .|++|||.++. ..+ .+++.++++..++.++..+.| ..||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999996 59999997531 122 356778899999988887777 4899999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhhccC
Q 011713 384 LLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 384 ll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
|+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||++..+ ..||+|++|++|+|++.|++++++.+.
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 9999999999999999999999999999988654 78999999999876 569999999999999999999998753
No 87
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-49 Score=380.12 Aligned_cols=211 Identities=30% Similarity=0.440 Sum_probs=182.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCC---HHHHhcc
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG---LKDLRTK 309 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~---~~~lr~~ 309 (479)
++++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999642 45999999999999999999999999999999999999999999999999998876 4568889
Q ss_pred ceEEcCCCcccc-ccHHhhcCCCC---------------CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChh
Q 011713 310 LSIIPQEPTLFR-GSVRTNLDPLG---------------MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 373 (479)
Q Consensus 310 i~~V~Q~~~lF~-gTi~eNi~~~~---------------~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgG 373 (479)
++||||++.+|. .|++||+.+.. ...++++.++++..++.++. ......||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA-----------YQRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh-----------CCCcccCCHH
Confidence 999999999887 69999996421 01123455566666554433 3345789999
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecC
Q 011713 374 QRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDL 450 (479)
Q Consensus 374 QrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~ 450 (479)
||||++||||++++|++||||||||+||+.+...+.+.|+++. .++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999999874 3799999999999987 699999999999999999
Q ss_pred hhhhh
Q 011713 451 PSNLM 455 (479)
Q Consensus 451 ~~eLl 455 (479)
++++.
T Consensus 229 ~~~~~ 233 (241)
T cd03256 229 PAELT 233 (241)
T ss_pred HHHhh
Confidence 98864
No 88
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=6.3e-50 Score=350.37 Aligned_cols=207 Identities=24% Similarity=0.384 Sum_probs=187.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHH---HHhcc
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLRTK 309 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~---~lr~~ 309 (479)
|+|+||+.+|+.. +++|+||||+|++||.+-++||||||||||+|||++...|+.|+|.++|.|++.+..+ -+|++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 7999999999877 6799999999999999999999999999999999999999999999999999887654 58999
Q ss_pred ceEEcCCCccccc-cHHhhcCCC-C--CC----CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 011713 310 LSIIPQEPTLFRG-SVRTNLDPL-G--MY----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (479)
Q Consensus 310 i~~V~Q~~~lF~g-Ti~eNi~~~-~--~~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiA 381 (479)
||+|+||..|... |+.||+++. . .. -.+++.++++.+||.+-...+| ..|||||+||+|||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHHH
Confidence 9999999998765 999999742 1 12 2467888999999999999999 68999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcC-CEEEEEeCCEEEEecCh
Q 011713 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDS-DMVMVLSYGELVEYDLP 451 (479)
Q Consensus 382 RAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~-D~I~vl~~G~Ive~G~~ 451 (479)
||++.+|++||=||||.+|||++...|++.+.+.- .|.||++.||..+.+..+ -|++.+++|+++....+
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 99999999999999999999999999999998864 489999999999999875 67999999999876543
No 89
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-49 Score=388.12 Aligned_cols=214 Identities=25% Similarity=0.415 Sum_probs=184.1
Q ss_pred EEEEeEEEEeCCCC---CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCC----CCHHH
Q 011713 233 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS----MGLKD 305 (479)
Q Consensus 233 I~~~~vsf~Y~~~~---~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~----~~~~~ 305 (479)
|+++||+|+|++.. +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997432 259999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhccceEEcCCC--ccccccHHhhcCCCC---CCCH----HHHHHHHHHccHH-HHHHhCCccccccccCCCCCCChhHH
Q 011713 306 LRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSVGQR 375 (479)
Q Consensus 306 lr~~i~~V~Q~~--~lF~gTi~eNi~~~~---~~~~----~~i~~a~~~a~l~-~~i~~lp~G~~T~vge~G~~LSgGQr 375 (479)
+|+.++||+|+| .+|..|+.||+.++. ..+. +++.++++.+++. ++.. .....||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWE-----------KSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhcc-----------CCcccCCHHHH
Confidence 899999999998 799999999997542 1232 3455566666663 2322 33468999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhh
Q 011713 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSN 453 (479)
Q Consensus 376 QRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~e 453 (479)
||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|++++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998865 479999999999987 4699999999999999999999
Q ss_pred hhcc
Q 011713 454 LMKT 457 (479)
Q Consensus 454 Ll~~ 457 (479)
+..+
T Consensus 231 ~~~~ 234 (288)
T PRK13643 231 VFQE 234 (288)
T ss_pred HHcC
Confidence 8753
No 90
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.1e-49 Score=378.83 Aligned_cols=216 Identities=25% Similarity=0.416 Sum_probs=182.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHH-hccce
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKLS 311 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~l-r~~i~ 311 (479)
++++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ |..++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 478999999963 459999999999999999999999999999999999999999999999999998877654 56799
Q ss_pred EEcCCCccccc-cHHhhcCCCC-CC------------CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHH
Q 011713 312 IIPQEPTLFRG-SVRTNLDPLG-MY------------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~~-~~------------~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
||||++.+|.+ |++||+.+.. .. ..++.. ..++++++.+ |++.........||||||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qr 151 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREAR-----ERAEELLERV--GLADLADRPAGELSYGQQRR 151 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHH-----HHHHHHHHHc--CccchhhCChhhCCHHHHHH
Confidence 99999999987 9999996431 11 011111 1123344443 44444455567899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhh
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl 455 (479)
++||||++.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+|++.|++++++
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 999999999999999999999999999999999998865 57999999999999865 9999999999999999999987
Q ss_pred cc
Q 011713 456 KT 457 (479)
Q Consensus 456 ~~ 457 (479)
..
T Consensus 232 ~~ 233 (236)
T cd03219 232 NN 233 (236)
T ss_pred cC
Confidence 53
No 91
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-49 Score=388.33 Aligned_cols=216 Identities=30% Similarity=0.463 Sum_probs=185.1
Q ss_pred EEEEeEEEEeCCCC---CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCC--HHHHh
Q 011713 233 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG--LKDLR 307 (479)
Q Consensus 233 I~~~~vsf~Y~~~~---~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~--~~~lr 307 (479)
|+++||+|+|++.. +++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 89999999997432 36999999999999999999999999999999999999999999999999998754 45788
Q ss_pred ccceEEcCCC--ccccccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHH
Q 011713 308 TKLSIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (479)
Q Consensus 308 ~~i~~V~Q~~--~lF~gTi~eNi~~~~---~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRl 378 (479)
++|+||||+| .+|+.|++|||.+.. ..+. +++.++++.+++. +.+........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 9999999998 578999999997532 2333 3455666666664 01223334478999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhh
Q 011713 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 379 aiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+ +.||||++|++|++++.|+.++++
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999988753 78999999999987 469999999999999999999986
Q ss_pred cc
Q 011713 456 KT 457 (479)
Q Consensus 456 ~~ 457 (479)
+.
T Consensus 234 ~~ 235 (287)
T PRK13637 234 KE 235 (287)
T ss_pred hC
Confidence 53
No 92
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-49 Score=377.31 Aligned_cols=210 Identities=26% Similarity=0.370 Sum_probs=181.8
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 3 IEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 789999999964 459999999999999999999999999999999999999999999999999876653 3678999
Q ss_pred EcCCCcccc-ccHHhhcCCCC---CC----C----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 011713 313 IPQEPTLFR-GSVRTNLDPLG---MY----S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 380 (479)
Q Consensus 313 V~Q~~~lF~-gTi~eNi~~~~---~~----~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlai 380 (479)
|+|+|.+|. .|++||+.+.. .. + .+++.++++..++.++..+. ...||||||||++|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~l 147 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----------PAQLSGGQRQRVAL 147 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHHH
Confidence 999999986 59999997531 11 1 23455666776665554433 35799999999999
Q ss_pred HHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhcc
Q 011713 381 GRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 381 ARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 9999999999999999999999999999999988753 789999999999865 4999999999999999999999764
No 93
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=3.2e-49 Score=379.27 Aligned_cols=211 Identities=29% Similarity=0.418 Sum_probs=181.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCH---HHHhcc
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KDLRTK 309 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~---~~lr~~ 309 (479)
|+++||+++|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++. ..+|++
T Consensus 2 l~~~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 689999999962 2459999999999999999999999999999999999999999999999999987654 347889
Q ss_pred ceEEcCCCcccc-ccHHhhcCCCCC---------------CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChh
Q 011713 310 LSIIPQEPTLFR-GSVRTNLDPLGM---------------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 373 (479)
Q Consensus 310 i~~V~Q~~~lF~-gTi~eNi~~~~~---------------~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgG 373 (479)
++||||++.+|. .|++||+.+... ..++++.++++..++.++.. .....||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----------QRADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHH
Confidence 999999999887 599999964210 11234556666666654433 344689999
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecC
Q 011713 374 QRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDL 450 (479)
Q Consensus 374 QrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~ 450 (479)
||||++||||++++|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999998874 3789999999999985 599999999999999999
Q ss_pred hhhhh
Q 011713 451 PSNLM 455 (479)
Q Consensus 451 ~~eLl 455 (479)
++++.
T Consensus 230 ~~~~~ 234 (243)
T TIGR02315 230 PSELD 234 (243)
T ss_pred HHHhC
Confidence 99873
No 94
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-49 Score=389.42 Aligned_cols=212 Identities=25% Similarity=0.399 Sum_probs=191.7
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++||+.+|+ ...+++|+||+|++||.++++|||||||||++++|+||.+|++|+|.+||.|+..++++ ++.|+
T Consensus 5 ~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig 80 (352)
T COG3842 5 ALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIG 80 (352)
T ss_pred eEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcccc
Confidence 599999999997 34599999999999999999999999999999999999999999999999999998875 68999
Q ss_pred EEcCCCccccc-cHHhhcCCCCC----CC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 011713 312 IIPQEPTLFRG-SVRTNLDPLGM----YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~~~----~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiAR 382 (479)
+|+|+.-||+- ||+|||.|+-. .. ++++.++++.+++.++-.+.| ..|||||+||+||||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHHH
Confidence 99999999976 99999986421 22 247899999999999998888 689999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchh-hhcCCEEEEEeCCEEEEecChhhhhccC
Q 011713 383 VLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPT-ITDSDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 383 All~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~-i~~~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
||..+|++|+||||.||||..-...++.-+++.. .+.|.|+|||+.+. +..+|||.||++|+|.+.|+++|+..+.
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 9999999999999999999999888887776643 38999999999875 5679999999999999999999998754
No 95
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-49 Score=375.90 Aligned_cols=213 Identities=27% Similarity=0.446 Sum_probs=184.8
Q ss_pred EEEEeEEEEeCCCC--CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHH---HHh
Q 011713 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLR 307 (479)
Q Consensus 233 I~~~~vsf~Y~~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~---~lr 307 (479)
|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996431 2699999999999999999999999999999999999999999999999999877654 357
Q ss_pred ccceEEcCCCcccc-ccHHhhcCCC---CCCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHH
Q 011713 308 TKLSIIPQEPTLFR-GSVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 308 ~~i~~V~Q~~~lF~-gTi~eNi~~~---~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRla 379 (479)
+.++|+||++.+|. .|++||+.+. ...+ .+++.++++..++.++..+.| ..||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP-----------AQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh-----------hhCCHHHHHHHH
Confidence 89999999999997 5999999642 1122 345666777777766554433 689999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhc
Q 011713 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 380 iARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
||||++++|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999988753 7899999999999865 99999999999999999998865
No 96
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-49 Score=394.26 Aligned_cols=211 Identities=26% Similarity=0.409 Sum_probs=188.6
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++ .+++|+
T Consensus 6 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDIC 81 (351)
T ss_pred EEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEE
Confidence 5999999999963 459999999999999999999999999999999999999999999999999988765 467899
Q ss_pred EEcCCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 011713 312 IIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA 383 (479)
||+|++.+|.. |++||+.++- ..+ ++++.++++..++.++..+.| ..||||||||+|||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 9999997531 122 356778888888877766555 5799999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhhcc
Q 011713 384 LLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 384 ll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
|+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ ..||+|+||++|+|++.|+++++.++
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999988754 79999999999987 55999999999999999999999864
No 97
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-49 Score=386.51 Aligned_cols=219 Identities=24% Similarity=0.404 Sum_probs=184.1
Q ss_pred EEEEeEEEEeCCCC---CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCC----CHHH
Q 011713 233 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLKD 305 (479)
Q Consensus 233 I~~~~vsf~Y~~~~---~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~----~~~~ 305 (479)
|+++||+|+|++.. +++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 89999999996432 3599999999999999999999999999999999999999999999999999754 3467
Q ss_pred HhccceEEcCCC--ccccccHHhhcCCCC---CCCHHHHHHHHHHccHHHHHHhCCccccc-cccCCCCCCChhHHHHHH
Q 011713 306 LRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 306 lr~~i~~V~Q~~--~lF~gTi~eNi~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~G~~T-~vge~G~~LSgGQrQRla 379 (479)
+|++|+||||+| .+|..|++|||.++. ..+.++..+. +.+.++.+ |+++ ........||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 899999999997 688899999997532 2333333221 12233332 4543 234456789999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhc
Q 011713 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 380 iARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999874 4799999999999874 699999999999999999999876
Q ss_pred cC
Q 011713 457 TN 458 (479)
Q Consensus 457 ~~ 458 (479)
..
T Consensus 236 ~~ 237 (286)
T PRK13646 236 DK 237 (286)
T ss_pred CH
Confidence 53
No 98
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-49 Score=384.73 Aligned_cols=215 Identities=27% Similarity=0.450 Sum_probs=187.3
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecC--CCCHHHHhcc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDLRTK 309 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~--~~~~~~lr~~ 309 (479)
-|+++||+|+|+++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 48999999999633 45999999999999999999999999999999999999999999999999984 3456678999
Q ss_pred ceEEcCCC--ccccccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 011713 310 LSIIPQEP--TLFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 380 (479)
Q Consensus 310 i~~V~Q~~--~lF~gTi~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlai 380 (479)
++||||++ .+|+.|++||+.+.. ..+ .+++.++++..++.++.. ....+||||||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------CCcccCCHHHHHHHHH
Confidence 99999998 578999999997521 222 244667777777765433 3357899999999999
Q ss_pred HHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhcc
Q 011713 381 GRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 381 ARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999988754 799999999999986 6999999999999999999998764
Q ss_pred C
Q 011713 458 N 458 (479)
Q Consensus 458 ~ 458 (479)
.
T Consensus 233 ~ 233 (283)
T PRK13636 233 K 233 (283)
T ss_pred H
Confidence 3
No 99
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-49 Score=378.19 Aligned_cols=217 Identities=23% Similarity=0.352 Sum_probs=187.9
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCceEEECCeecCC--CCHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-----~~G~I~i~g~~i~~--~~~~ 304 (479)
-|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|+++|.++.. .+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 5999999999964 3599999999999999999999999999999999999997 49999999999863 3456
Q ss_pred HHhccceEEcCCCccccccHHhhcCCCC---C-CC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---M-YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~gTi~eNi~~~~---~-~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
.+|+.++||+|++.+|+.|++|||.+.. . .+ ++++.++++.+++.+.+ ++.+++ ....|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHHHH
Confidence 7889999999999999999999997531 1 11 34566777777765433 234455 35689999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhh
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
|++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||||++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999877899999999999875 49999999999999999999997
Q ss_pred cc
Q 011713 456 KT 457 (479)
Q Consensus 456 ~~ 457 (479)
+.
T Consensus 238 ~~ 239 (254)
T PRK14273 238 FN 239 (254)
T ss_pred hC
Confidence 53
No 100
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=9.4e-49 Score=376.79 Aligned_cols=216 Identities=27% Similarity=0.441 Sum_probs=186.7
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCC-----CceEEECCeecCCC--CHHH
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-----NGRILIDGLDICSM--GLKD 305 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~-----~G~I~i~g~~i~~~--~~~~ 305 (479)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++.+. +...
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 789999999964 35999999999999999999999999999999999999998 99999999998763 4567
Q ss_pred HhccceEEcCCCccccccHHhhcCCC---CC-CC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHH
Q 011713 306 LRTKLSIIPQEPTLFRGSVRTNLDPL---GM-YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 306 lr~~i~~V~Q~~~lF~gTi~eNi~~~---~~-~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
+|+.++|+||++.+|..|++||+.+. .. .+ ++++.++++..++.+++. .........||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHHH
Confidence 78999999999999999999999742 11 12 245666777777763332 11233446899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhc
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|++++++.
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999998876799999999999875 599999999999999999999875
Q ss_pred c
Q 011713 457 T 457 (479)
Q Consensus 457 ~ 457 (479)
.
T Consensus 233 ~ 233 (247)
T TIGR00972 233 N 233 (247)
T ss_pred C
Confidence 3
No 101
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-49 Score=374.36 Aligned_cols=208 Identities=23% Similarity=0.365 Sum_probs=179.4
Q ss_pred cEEEEeEEEEeCCCC--CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHH---H
Q 011713 232 RIELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---L 306 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~---l 306 (479)
-++++||+|+|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.+++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997432 46999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-ccceEEcCCCccccc-cHHhhcCCC---CCCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHH
Q 011713 307 R-TKLSIIPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 307 r-~~i~~V~Q~~~lF~g-Ti~eNi~~~---~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
| +.++|+||++.+|.. |++||+.+. ...+ ++++.++++..++.++.. ....+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRAN-----------HRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHH
Confidence 3 679999999999976 999999641 1122 234566666666554433 3346899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhcCCEEEEEeCCEEEEecC
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITDSDMVMVLSYGELVEYDL 450 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~ 450 (479)
++||||++.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999998874 4799999999999999999999999999998876
No 102
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-49 Score=371.25 Aligned_cols=202 Identities=28% Similarity=0.416 Sum_probs=175.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .++.++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEE
Confidence 478999999964 459999999999999999999999999999999999999999999999999986543 5778999
Q ss_pred EcCCCcccc-ccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 313 IPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 313 V~Q~~~lF~-gTi~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
|||++.+|. .|++||+.+.. ..+ ++++.++++..++.++..+.| ..||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP-----------HELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999886 59999996421 111 345667777777766655544 57999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEec
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYD 449 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G 449 (479)
+++|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999998864 37899999999998754 9999999999998865
No 103
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-48 Score=382.22 Aligned_cols=217 Identities=27% Similarity=0.410 Sum_probs=191.7
Q ss_pred cEEEEeEEEEeCCC-CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccc
Q 011713 232 RIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i 310 (479)
-|+++||+|+|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++.+.+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 38999999999743 34599999999999999999999999999999999999999999999999999888888899999
Q ss_pred eEEcCCC--ccccccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 011713 311 SIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (479)
Q Consensus 311 ~~V~Q~~--~lF~gTi~eNi~~~~---~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiA 381 (479)
+||+|+| .++..|+.|||.+.. ..+. +++.++++.+++.++....| ..||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREP-----------ARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 477889999997421 2233 34567788888877655433 57999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCc
Q 011713 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNS 459 (479)
Q Consensus 382 RAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g 459 (479)
|||+++|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++++..+
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHH
Confidence 999999999999999999999999999999988754 789999999999998999999999999999999999886543
No 104
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-49 Score=378.54 Aligned_cols=217 Identities=22% Similarity=0.390 Sum_probs=188.5
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEECCeecCC--CCHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~-----p~~G~I~i~g~~i~~--~~~~ 304 (479)
.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.. .+..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 4999999999964 359999999999999999999999999999999999975 689999999999875 3456
Q ss_pred HHhccceEEcCCCccccccHHhhcCCCC---CC-----CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~gTi~eNi~~~~---~~-----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
.+|+.++||+|++.+|..|++||+.+.. .. .++++.++++.+++.+++.. .+......|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHHH
Confidence 7889999999999999999999996421 11 23566777888877654432 234456789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhh
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
|++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|+|++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999877899999999999885 59999999999999999999998
Q ss_pred cc
Q 011713 456 KT 457 (479)
Q Consensus 456 ~~ 457 (479)
+.
T Consensus 237 ~~ 238 (253)
T PRK14242 237 TR 238 (253)
T ss_pred cC
Confidence 64
No 105
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-48 Score=378.60 Aligned_cols=218 Identities=27% Similarity=0.425 Sum_probs=189.2
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEECCeecCC--CCH
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGL 303 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~-----p~~G~I~i~g~~i~~--~~~ 303 (479)
+.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 12 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 12 SKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred ceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 46999999999964 359999999999999999999999999999999999996 589999999999863 456
Q ss_pred HHHhccceEEcCCCccccccHHhhcCCCC----CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHH
Q 011713 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPLG----MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (479)
Q Consensus 304 ~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~----~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQr 375 (479)
..+|++++|++|++.+|+.|++||+.+.. ..+ +++++++++.+++.+.+. ..+......||||||
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 162 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGGQQ 162 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHHHH
Confidence 67899999999999999999999997431 122 245677777777644332 234455678999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhh
Q 011713 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 376 QRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eL 454 (479)
||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||++..+. .||+|++|++|++++.|+++++
T Consensus 163 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (260)
T PRK10744 163 QRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTI 242 (260)
T ss_pred HHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999877889999999999885 5999999999999999999998
Q ss_pred hcc
Q 011713 455 MKT 457 (479)
Q Consensus 455 l~~ 457 (479)
...
T Consensus 243 ~~~ 245 (260)
T PRK10744 243 FTK 245 (260)
T ss_pred HhC
Confidence 763
No 106
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3.5e-49 Score=372.76 Aligned_cols=202 Identities=27% Similarity=0.414 Sum_probs=173.5
Q ss_pred EEEEeEEEEeCCCC--CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHH----H
Q 011713 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD----L 306 (479)
Q Consensus 233 I~~~~vsf~Y~~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~----l 306 (479)
|+++||+++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996531 46999999999999999999999999999999999999999999999999998876432 4
Q ss_pred hccceEEcCCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHH
Q 011713 307 RTKLSIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (479)
Q Consensus 307 r~~i~~V~Q~~~lF~g-Ti~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRl 378 (479)
|++++||+|++.+|.+ |++||+.+.. ..+ ++++.++++..++.++..+ ....||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNH-----------YPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhc-----------ChhhcCHHHHHHH
Confidence 6789999999999987 9999997521 111 2345666666666544433 3368999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhcCCEEEEEeCCEE
Q 011713 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITDSDMVMVLSYGEL 445 (479)
Q Consensus 379 aiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~~D~I~vl~~G~I 445 (479)
+||||++.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998754 7999999999999889999999999974
No 107
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.9e-49 Score=381.36 Aligned_cols=216 Identities=28% Similarity=0.450 Sum_probs=190.0
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 48999999999744456999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcCCC--ccccccHHhhcCCCC---CCCHH----HHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 011713 312 IIPQEP--TLFRGSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (479)
Q Consensus 312 ~V~Q~~--~lF~gTi~eNi~~~~---~~~~~----~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiAR 382 (479)
|++|++ .++..|++||+.+.. ..+.+ ++.++++..++.++..+.| ..||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP-----------QNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 456779999997521 12332 3566777777776665544 689999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccC
Q 011713 383 VLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 383 All~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+..
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcCH
Confidence 99999999999999999999999999999998753 48999999999998899999999999999999999887643
No 108
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-49 Score=377.05 Aligned_cols=215 Identities=26% Similarity=0.406 Sum_probs=183.7
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
++++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999753 459999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EcCCCcccc-ccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 313 IPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 313 V~Q~~~lF~-gTi~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
+||++.+|. .|++||+.+.. ..+ ++++.++++..++.+ +........+||||||||++||||+
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~laral 150 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARAL 150 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHHH
Confidence 999999996 69999996421 112 233445555554432 0123344578999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhcc
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
+++|++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 151 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 151 AADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999999998753 799999999999764 5999999999999999999998754
No 109
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.4e-48 Score=373.01 Aligned_cols=212 Identities=28% Similarity=0.400 Sum_probs=181.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+... ++.++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEE
Confidence 789999999963 45999999999999999999999999999999999999999999999999998776544 458999
Q ss_pred EcCCCcc-ccccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 313 IPQEPTL-FRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 313 V~Q~~~l-F~gTi~eNi~~~~---~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
+||++.+ +..|++||+.+.. ..+. +++.++++..+ ++.........||||||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLG-----------LAERADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChhhhcCChhhCCHHHHHHHHHHHHH
Confidence 9999988 5679999996421 1222 22333444433 44444555578999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccC
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
+++|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+..
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 223 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGAL 223 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHHc
Confidence 99999999999999999999999999999875 479999999999999889999999999999999999998753
No 110
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-49 Score=356.77 Aligned_cols=212 Identities=29% Similarity=0.455 Sum_probs=188.0
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCC---HHHHhc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG---LKDLRT 308 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~---~~~lr~ 308 (479)
.|+++||+..||+. ..+|+||||+|++||.|||+|+||||||||++.|.|+.+|++|+|.++|.++..+. +..+|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 48999999999854 45999999999999999999999999999999999999999999999999998887 667899
Q ss_pred cceEEcCCCccccc-cHHhhcCCC------------CCCC---HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCCh
Q 011713 309 KLSIIPQEPTLFRG-SVRTNLDPL------------GMYS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSV 372 (479)
Q Consensus 309 ~i~~V~Q~~~lF~g-Ti~eNi~~~------------~~~~---~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSg 372 (479)
+||+++|.+-|-+. |+.+|+..+ +-.+ ..+..+|++.+|+.++... +..+|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-----------ra~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-----------RASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-----------HhccCCc
Confidence 99999999999765 999998422 1133 3456678888888776543 4578999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEec
Q 011713 373 GQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYD 449 (479)
Q Consensus 373 GQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G 449 (479)
||+||++|||||.++|+|++=|||+|+|||.+.+++++.|++.. .|.|+|+.-|.+..++. ||||+-|++|+|+-.|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999999999999999999998754 57999999999999765 9999999999999999
Q ss_pred Chhhhh
Q 011713 450 LPSNLM 455 (479)
Q Consensus 450 ~~~eLl 455 (479)
+.+||-
T Consensus 231 ~~~el~ 236 (258)
T COG3638 231 PASELT 236 (258)
T ss_pred Chhhhh
Confidence 999953
No 111
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-48 Score=380.97 Aligned_cols=215 Identities=24% Similarity=0.398 Sum_probs=190.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
++++||+++|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 4 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 7899999999643 349999999999999999999999999999999999999999999999999988888889999999
Q ss_pred EcCCC--ccccccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 011713 313 IPQEP--TLFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (479)
Q Consensus 313 V~Q~~--~lF~gTi~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA 383 (479)
|+|++ .+|+.|++||+.+.. ..+ ++++.++++.+++.++..+.| ..||||||||++||||
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lara 151 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAGV 151 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHHH
Confidence 99998 478889999996421 223 235677888888877766554 5899999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhhccCc
Q 011713 384 LLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLMKTNS 459 (479)
Q Consensus 384 ll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~~g 459 (479)
|+.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+ +.||+|++|++|++++.|+++++++...
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~ 230 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcCHH
Confidence 9999999999999999999999999999988753 78999999999998 5699999999999999999999986543
No 112
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-48 Score=384.15 Aligned_cols=216 Identities=25% Similarity=0.379 Sum_probs=183.8
Q ss_pred EEEEeEEEEeCCCC---CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCC----CCHHH
Q 011713 233 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS----MGLKD 305 (479)
Q Consensus 233 I~~~~vsf~Y~~~~---~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~----~~~~~ 305 (479)
|+++||+|+|++.. .++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 89999999996432 359999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhccceEEcCCC--ccccccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 306 LRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 306 lr~~i~~V~Q~~--~lF~gTi~eNi~~~~---~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
+|+.|+||+|+| .+|+.|++|||.++. ..+. +++.++++.+++++.+ .......|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCHHHHH
Confidence 888999999998 688899999997531 2233 3445566666664221 12234679999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhh
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSN 453 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~e 453 (479)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999988743 789999999999875 599999999999999999999
Q ss_pred hhccC
Q 011713 454 LMKTN 458 (479)
Q Consensus 454 Ll~~~ 458 (479)
+.+..
T Consensus 233 ~~~~~ 237 (290)
T PRK13634 233 IFADP 237 (290)
T ss_pred HhcCH
Confidence 87543
No 113
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-48 Score=380.26 Aligned_cols=216 Identities=22% Similarity=0.392 Sum_probs=188.6
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 48999999999754445999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEcCCCc--cccccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 011713 312 IIPQEPT--LFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (479)
Q Consensus 312 ~V~Q~~~--lF~gTi~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiAR 382 (479)
|++|+|. ++..|+++|+.+.. ..+ .+++.++++..++.++... ....||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADY-----------EPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHH
Confidence 9999984 44568999986431 122 2456667777776654433 23689999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccC
Q 011713 383 VLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 383 All~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
|++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++....
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 233 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCH
Confidence 99999999999999999999999999999988753 78999999999998889999999999999999999987653
No 114
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=5.2e-49 Score=394.20 Aligned_cols=200 Identities=25% Similarity=0.389 Sum_probs=180.5
Q ss_pred CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHH----hccceEEcCCCccccc
Q 011713 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL----RTKLSIIPQEPTLFRG 322 (479)
Q Consensus 247 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~l----r~~i~~V~Q~~~lF~g 322 (479)
+++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|++||.++.+++..++ |++|+||+|++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 459999999999999999999999999999999999999999999999999999998888 7899999999999985
Q ss_pred -cHHhhcCCCC---CC----CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEe
Q 011713 323 -SVRTNLDPLG---MY----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILD 394 (479)
Q Consensus 323 -Ti~eNi~~~~---~~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLD 394 (479)
|++|||.+.. .. ..+++.++++.+++.++..+.| .+||||||||++|||||+++|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999997431 12 2356778888888877776665 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhhcc
Q 011713 395 EATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 395 E~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
||||+||+.+.+.+++.+.++. .++|+|+|||++..+ +.||+|++|++|++++.|++++++++
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 9999999999999999998764 379999999999975 66999999999999999999999874
No 115
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-48 Score=367.60 Aligned_cols=202 Identities=30% Similarity=0.442 Sum_probs=178.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++||+|+|++ .++|+|+||++++| ++||+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..+|+.++|
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 579999999964 35999999999999 99999999999999999999999999999999999998776 778999999
Q ss_pred EcCCCccccc-cHHhhcCCC---CCCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 313 IPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 313 V~Q~~~lF~g-Ti~eNi~~~---~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
++|++.+|.+ |++||+.+. ...+ ++++.++++..++.++.+. .+ ..||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~----~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-------KI----GSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhC-------ch----hhCCHHHHHHHHHHHHH
Confidence 9999999986 999999642 1122 3457778888888765433 22 57999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeCCEEEEec
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYD 449 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G 449 (479)
+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+. .||++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999877899999999999986 59999999999999865
No 116
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-48 Score=381.42 Aligned_cols=215 Identities=25% Similarity=0.418 Sum_probs=192.0
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCC---ceEEECCeecCCCCHHHHhc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN---GRILIDGLDICSMGLKDLRT 308 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~---G~I~i~g~~i~~~~~~~lr~ 308 (479)
.|+++|++|+|++...++|+|+||+|++||++||+|+||||||||+++|+|+++|++ |+|.+||.++...+...+|+
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 489999999997544469999999999999999999999999999999999999998 89999999998888778899
Q ss_pred cceEEcCCC--ccccccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHH
Q 011713 309 KLSIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 309 ~i~~V~Q~~--~lF~gTi~eNi~~~~---~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRla 379 (479)
+++||+|+| .+++.|++|||.+.. ..+. +++.++++.+++.++..+.| ..||||||||++
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv~ 153 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRVA 153 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHH
Confidence 999999998 467889999997531 2233 44777888888887776665 689999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhcc
Q 011713 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 380 iARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|++++++..
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999988753 7899999999999989999999999999999999988653
No 117
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1e-48 Score=366.00 Aligned_cols=198 Identities=28% Similarity=0.434 Sum_probs=174.8
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEE
Q 011713 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (479)
Q Consensus 234 ~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V 313 (479)
+++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+|++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 468999999642 459999999999999999999999999999999999999999999999998864 4577889999
Q ss_pred cCCC--ccccccHHhhcCCCC---CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 011713 314 PQEP--TLFRGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (479)
Q Consensus 314 ~Q~~--~lF~gTi~eNi~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p 388 (479)
+|++ .+|..|++||+.+.. ...++++.++++..++.++..+.| ..||||||||++||||++++|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCC
Confidence 9998 467889999997532 123457888999998887766555 479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHH-CCCcEEEEEccCchhhhc-CCEEEEEeCCEEE
Q 011713 389 RILILDEATASIDSATDAILQRIIREE-FPGSTVITIAHRVPTITD-SDMVMVLSYGELV 446 (479)
Q Consensus 389 ~iliLDE~TSaLD~~te~~i~~~l~~~-~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Iv 446 (479)
++|||||||++||+.+.+.+.+.|+++ .+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999887 457899999999999864 9999999999985
No 118
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-48 Score=376.39 Aligned_cols=217 Identities=27% Similarity=0.398 Sum_probs=186.7
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCC-----CceEEECCeecC--CCCHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-----NGRILIDGLDIC--SMGLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~-----~G~I~i~g~~i~--~~~~~ 304 (479)
.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4899999999964 35999999999999999999999999999999999999974 999999999997 45666
Q ss_pred HHhccceEEcCCCccccc-cHHhhcCCC---CC--CC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhH
Q 011713 305 DLRTKLSIIPQEPTLFRG-SVRTNLDPL---GM--YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 374 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~g-Ti~eNi~~~---~~--~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQ 374 (479)
.+|++++|++|++.+|.. |++||+.+. .. .+ ++++.++++..++.+++.. ........|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-------RLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-------hhccChhhCCHHH
Confidence 788999999999999976 999999642 11 11 2345666777766543321 2334557899999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhh
Q 011713 375 RQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSN 453 (479)
Q Consensus 375 rQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~e 453 (479)
|||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999998764 99999999999999999999
Q ss_pred hhcc
Q 011713 454 LMKT 457 (479)
Q Consensus 454 Ll~~ 457 (479)
+++.
T Consensus 235 ~~~~ 238 (253)
T PRK14267 235 VFEN 238 (253)
T ss_pred HHhC
Confidence 9764
No 119
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-48 Score=384.10 Aligned_cols=214 Identities=20% Similarity=0.299 Sum_probs=182.9
Q ss_pred EEEEeEEEEeCCCC---CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCC---------
Q 011713 233 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS--------- 300 (479)
Q Consensus 233 I~~~~vsf~Y~~~~---~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~--------- 300 (479)
|+++||+|+|++.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 89999999997532 259999999999999999999999999999999999999999999999987632
Q ss_pred ---------------CCHHHHhccceEEcCCC--ccccccHHhhcCCCC---CCCH----HHHHHHHHHccHH-HHHHhC
Q 011713 301 ---------------MGLKDLRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLK-ATISRL 355 (479)
Q Consensus 301 ---------------~~~~~lr~~i~~V~Q~~--~lF~gTi~eNi~~~~---~~~~----~~i~~a~~~a~l~-~~i~~l 355 (479)
.+...+|+.|+||||+| .+|..|++|||.++. ..+. +++.++++.+++. ++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-- 160 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ-- 160 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh--
Confidence 13467899999999986 688899999997542 2232 3456667776663 3333
Q ss_pred CccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhh-hc
Q 011713 356 PMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTI-TD 433 (479)
Q Consensus 356 p~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~ 433 (479)
.....||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+ +.
T Consensus 161 ---------~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 161 ---------RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred ---------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 3346899999999999999999999999999999999999999999998864 489999999999976 56
Q ss_pred CCEEEEEeCCEEEEecChhhhhcc
Q 011713 434 SDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 434 ~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
||||++|++|+|++.|+.+++.+.
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998764
No 120
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.1e-48 Score=369.45 Aligned_cols=205 Identities=26% Similarity=0.449 Sum_probs=177.4
Q ss_pred EEEEeEEEEeCCCC--CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccc
Q 011713 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (479)
Q Consensus 233 I~~~~vsf~Y~~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i 310 (479)
|+++||+++|++.. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 78999999997532 159999999999999999999999999999999999999999999999999975 456788999
Q ss_pred eEEcCCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 011713 311 SIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (479)
Q Consensus 311 ~~V~Q~~~lF~g-Ti~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiAR 382 (479)
+|+||++.+|.+ |++||+.+.. ..+ ++++.++++..++.++..+ ....||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR-----------RVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhh-----------hhhhcCHHHHHHHHHHH
Confidence 999999999986 9999996321 122 3456667777776655443 34689999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEec
Q 011713 383 VLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYD 449 (479)
Q Consensus 383 All~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G 449 (479)
|++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998874 47999999999998764 9999999999998765
No 121
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-48 Score=377.55 Aligned_cols=219 Identities=23% Similarity=0.391 Sum_probs=189.6
Q ss_pred CccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCceEEECCeecCC--CC
Q 011713 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MG 302 (479)
Q Consensus 230 ~~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-----~~G~I~i~g~~i~~--~~ 302 (479)
.+.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|++||.++.+ .+
T Consensus 17 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 346999999999964 4599999999999999999999999999999999999985 89999999999875 34
Q ss_pred HHHHhccceEEcCCCccccccHHhhcCCCC---CC--C----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChh
Q 011713 303 LKDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY--S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 373 (479)
Q Consensus 303 ~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~---~~--~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgG 373 (479)
...+|+.++||+|++.+|+.|++||+.+.. .. + ++++.++++.+++.+++. +........||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHH
Confidence 567889999999999999999999997421 11 1 345677788877765443 1234456789999
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChh
Q 011713 374 QRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPS 452 (479)
Q Consensus 374 QrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~ 452 (479)
||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998877889999999999985 58999999999999999999
Q ss_pred hhhcc
Q 011713 453 NLMKT 457 (479)
Q Consensus 453 eLl~~ 457 (479)
+++..
T Consensus 248 ~~~~~ 252 (267)
T PRK14235 248 KMFTN 252 (267)
T ss_pred HHHhC
Confidence 99753
No 122
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.4e-48 Score=369.60 Aligned_cols=212 Identities=26% Similarity=0.427 Sum_probs=178.1
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHH-hccce
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKLS 311 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~l-r~~i~ 311 (479)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 578999999964 359999999999999999999999999999999999999999999999999988877654 67899
Q ss_pred EEcCCCccccc-cHHhhcCCCCC-CC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhh
Q 011713 312 IIPQEPTLFRG-SVRTNLDPLGM-YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 385 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~~~-~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll 385 (479)
|+||++.+|.+ |++||+.+... .. .+++.++++. +..+++.++ .....||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~------~~~l~~~~~----~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYEL------FPRLKERRK----QLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHH------HHhhhhhhh----CchhhCCHHHHHHHHHHHHHh
Confidence 99999999987 99999975321 11 1122222222 212222333 445679999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhc
Q 011713 386 KRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 386 ~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
++|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999998875 47899999999998755 99999999999999999888754
No 123
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.4e-48 Score=391.74 Aligned_cols=212 Identities=25% Similarity=0.362 Sum_probs=187.0
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999964 3599999999999999999999999999999999999999999999999999887654 67899
Q ss_pred EEcCCCcccc-ccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 011713 312 IIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (479)
Q Consensus 312 ~V~Q~~~lF~-gTi~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA 383 (479)
||+|++.+|+ .|++||+.++. ..+ ++++.++++..++.++..+.| ..||||||||+|||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP-----------GQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999996 59999997531 122 345677777777766655544 6899999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhhccC
Q 011713 384 LLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 384 ll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
|+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|++++++++.
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999999988654 78999999999986 559999999999999999999998743
No 124
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.8e-48 Score=356.05 Aligned_cols=178 Identities=32% Similarity=0.589 Sum_probs=167.1
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++|++|+|++..+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... ...+|+.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 578999999975434699999999999999999999999999999999999999999999999998776 6678899999
Q ss_pred EcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEE
Q 011713 313 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILI 392 (479)
Q Consensus 313 V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~ili 392 (479)
++|++.+|+.|++||+ ...||||||||++||||++++|++||
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 46899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEec
Q 011713 393 LDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYD 449 (479)
Q Consensus 393 LDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G 449 (479)
|||||++||+.+.+.+.+.|+++.+++|+|++||++..++.||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999887789999999999999999999999999998765
No 125
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-48 Score=380.36 Aligned_cols=216 Identities=26% Similarity=0.406 Sum_probs=191.2
Q ss_pred cEEEEeEEEEeCCC----CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCC-HHHH
Q 011713 232 RIELEDLKVRYRPN----TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG-LKDL 306 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~-~~~l 306 (479)
-|+++||+++|++. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 48999999999742 246999999999999999999999999999999999999999999999999997654 4567
Q ss_pred hccceEEcCCCc--cccccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHH
Q 011713 307 RTKLSIIPQEPT--LFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 307 r~~i~~V~Q~~~--lF~gTi~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
|+.++||||+|. +|..|+.+|+.+.. ..+ ++++.++++.+++.++..+.| ..||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 77779999997532 122 356788888889888777665 5799999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhh
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
++|||||+++|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+..||++++|++|+|++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999874 379999999999999889999999999999999999997
Q ss_pred ccC
Q 011713 456 KTN 458 (479)
Q Consensus 456 ~~~ 458 (479)
+..
T Consensus 233 ~~~ 235 (280)
T PRK13633 233 KEV 235 (280)
T ss_pred cCh
Confidence 653
No 126
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-48 Score=377.93 Aligned_cols=213 Identities=27% Similarity=0.450 Sum_probs=186.4
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCC-HHHHhccce
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG-LKDLRTKLS 311 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~-~~~lr~~i~ 311 (479)
++++||+++|++. +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++...+ ...+++.++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999643 35999999999999999999999999999999999999999999999999998775 467888999
Q ss_pred EEcCCCc--cccccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 011713 312 IIPQEPT--LFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (479)
Q Consensus 312 ~V~Q~~~--lF~gTi~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiAR 382 (479)
||+|+|. +|+.|++|||.+.. ..+ ++++.++++..++.++.... ...||||||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRS-----------PKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-----------cccCCHHHHHHHHHHH
Confidence 9999985 56789999997532 122 34566667777776655443 3689999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhcc
Q 011713 383 VLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 383 All~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
|++++|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999998865 47999999999999999999999999999999999998653
No 127
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-48 Score=377.19 Aligned_cols=213 Identities=28% Similarity=0.409 Sum_probs=189.5
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 4999999999964 35999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcCCCccccc-cHHhhcCCCC-----------CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHH
Q 011713 312 IIPQEPTLFRG-SVRTNLDPLG-----------MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~~-----------~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRla 379 (479)
|++|++.+|.+ |+.||+.+.. ...++++.++++.+++.+++...| ..||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHHH
Confidence 99999877665 9999997421 012356788888888877665554 479999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhc
Q 011713 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 380 iARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|+|++.|+++++..
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 99999999999999999999999999999999988743 799999999999885 599999999999999999999875
Q ss_pred c
Q 011713 457 T 457 (479)
Q Consensus 457 ~ 457 (479)
.
T Consensus 238 ~ 238 (265)
T PRK10575 238 G 238 (265)
T ss_pred H
Confidence 3
No 128
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.3e-48 Score=366.09 Aligned_cols=210 Identities=20% Similarity=0.358 Sum_probs=188.1
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCH----HHHhcc
Q 011713 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL----KDLRTK 309 (479)
Q Consensus 234 ~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~----~~lr~~ 309 (479)
.+.|+.|+|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 578999999765 459999999999999999999999999999999999999999999999998876542 345678
Q ss_pred ceEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCC
Q 011713 310 LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389 (479)
Q Consensus 310 i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~ 389 (479)
++|++|++.+|+.|++||+.+....++++..++++.+++.+++..+|.|++|.++.....||||||||++||||++++|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999998644445667788999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHH--HHHHHC-CCcEEEEEccCchhhhcCCEEEEEeCCE
Q 011713 390 ILILDEATASIDSATDAILQR--IIREEF-PGSTVITIAHRVPTITDSDMVMVLSYGE 444 (479)
Q Consensus 390 iliLDE~TSaLD~~te~~i~~--~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl~~G~ 444 (479)
+|||||||++||+.+...+.+ .++... .++|+|++||+++.+..||++++|++|+
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999888877 444443 3689999999999999999999999984
No 129
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.1e-48 Score=394.39 Aligned_cols=220 Identities=26% Similarity=0.427 Sum_probs=194.8
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++..+++++|+
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 3899999999964 45999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcc-ccccHHhhcCCCC-----------CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHH
Q 011713 312 IIPQEPTL-FRGSVRTNLDPLG-----------MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 312 ~V~Q~~~l-F~gTi~eNi~~~~-----------~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRla 379 (479)
||+|++.+ |+.|++||+.++. ..+.+++.++++.+++.++..+. ...||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----------~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----------VTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHH
Confidence 99999987 6779999996431 11245688899999987766443 3579999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhhcc
Q 011713 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 380 iARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
|||||+++|++|||||||++||+.+...+++.|+++. +++|+|++||+++.+ +.||||++|++|++++.|++++++..
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 9999999999999999999999999999999999875 478999999999998 55999999999999999999998864
Q ss_pred CchHHHHH
Q 011713 458 NSAFSKLV 465 (479)
Q Consensus 458 ~g~y~~l~ 465 (479)
. ...+.|
T Consensus 230 ~-~l~~~~ 236 (402)
T PRK09536 230 D-TLRAAF 236 (402)
T ss_pred H-HHHHHh
Confidence 3 344444
No 130
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=2.6e-48 Score=389.70 Aligned_cols=211 Identities=27% Similarity=0.380 Sum_probs=186.5
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.+.+. .+++|+
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 3899999999964 359999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEcCCCccccc-cHHhhcCCCC-------CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHH
Q 011713 312 IIPQEPTLFRG-SVRTNLDPLG-------MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~~-------~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRla 379 (479)
||+|++.+|+. |++||+.+.. ..+ ++++.++++..++.++..+.| ..||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 99999999975 9999997531 112 346677888888876665554 589999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhc
Q 011713 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 380 iARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|++++++.
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988754 689999999999865 599999999999999999999986
Q ss_pred c
Q 011713 457 T 457 (479)
Q Consensus 457 ~ 457 (479)
+
T Consensus 227 ~ 227 (353)
T PRK10851 227 E 227 (353)
T ss_pred C
Confidence 4
No 131
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.4e-48 Score=374.03 Aligned_cols=212 Identities=24% Similarity=0.421 Sum_probs=183.8
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCC----------
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG---------- 302 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~---------- 302 (479)
|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 579999999964 35999999999999999999999999999999999999999999999999987653
Q ss_pred ---HHHHhccceEEcCCCcccc-ccHHhhcCCCC----CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCC
Q 011713 303 ---LKDLRTKLSIIPQEPTLFR-GSVRTNLDPLG----MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENW 370 (479)
Q Consensus 303 ---~~~lr~~i~~V~Q~~~lF~-gTi~eNi~~~~----~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~L 370 (479)
...+|+.++||+|++.+|. .|+.||+.+.. ... ++++.++++..++.++..+. ...|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM-----------PAQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC-----------hhhc
Confidence 2467889999999999885 69999997421 111 24456666666666555443 3689
Q ss_pred ChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEE
Q 011713 371 SVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVE 447 (479)
Q Consensus 371 SgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive 447 (479)
|||||||++||||++++|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+. .||++++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988653 789999999999985 599999999999999
Q ss_pred ecChhhhhcc
Q 011713 448 YDLPSNLMKT 457 (479)
Q Consensus 448 ~G~~~eLl~~ 457 (479)
.|+++++.+.
T Consensus 228 ~g~~~~~~~~ 237 (252)
T TIGR03005 228 QGKPDEIFRQ 237 (252)
T ss_pred eCCHHHHhcC
Confidence 9999999864
No 132
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-48 Score=379.83 Aligned_cols=216 Identities=26% Similarity=0.394 Sum_probs=186.6
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHH----hcc
Q 011713 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL----RTK 309 (479)
Q Consensus 234 ~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~l----r~~ 309 (479)
.++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 56788888853 459999999999999999999999999999999999999999999999999988776543 468
Q ss_pred ceEEcCCCcccc-ccHHhhcCCC---CCC----CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 011713 310 LSIIPQEPTLFR-GSVRTNLDPL---GMY----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (479)
Q Consensus 310 i~~V~Q~~~lF~-gTi~eNi~~~---~~~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiA 381 (479)
++|+||++.+|. .|++||+.+. ... .++++.++++..++.+++.+.| ..||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 999999999985 5999999642 111 2356778888888887776665 47999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhcc-
Q 011713 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMKT- 457 (479)
Q Consensus 382 RAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~- 457 (479)
||++++|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+. .||++++|++|++++.|+++++++.
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999998874 3799999999999875 5999999999999999999999863
Q ss_pred CchHH
Q 011713 458 NSAFS 462 (479)
Q Consensus 458 ~g~y~ 462 (479)
...|.
T Consensus 253 ~~~~~ 257 (269)
T cd03294 253 ANDYV 257 (269)
T ss_pred CcHHH
Confidence 33343
No 133
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.9e-48 Score=368.55 Aligned_cols=203 Identities=28% Similarity=0.444 Sum_probs=174.0
Q ss_pred EEEEeEEEEeCCCC--CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHH---Hh
Q 011713 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LR 307 (479)
Q Consensus 233 I~~~~vsf~Y~~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~---lr 307 (479)
|+++||+++|++.. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996422 45999999999999999999999999999999999999999999999999998877654 34
Q ss_pred -ccceEEcCCCcccc-ccHHhhcCCC---CCCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHH
Q 011713 308 -TKLSIIPQEPTLFR-GSVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (479)
Q Consensus 308 -~~i~~V~Q~~~lF~-gTi~eNi~~~---~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRl 378 (479)
+.++||+|++.+|. .|++||+.+. ...+ .+++.++++..++++...+ ....||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINH-----------RPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHH
Confidence 68999999999996 5999999642 1122 2345566666666544433 3367999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhcCCEEEEEeCCEEE
Q 011713 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITDSDMVMVLSYGELV 446 (479)
Q Consensus 379 aiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~~D~I~vl~~G~Iv 446 (479)
+||||++++|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+..||+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999998874 378999999999999999999999999986
No 134
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-48 Score=373.13 Aligned_cols=217 Identities=29% Similarity=0.431 Sum_probs=187.9
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCceEEECCeecCCCCHHHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSMGLKDL 306 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-----~~G~I~i~g~~i~~~~~~~l 306 (479)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.+.+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4899999999964 3599999999999999999999999999999999999984 69999999999998888889
Q ss_pred hccceEEcCCCccc-cccHHhhcCCCC---C--CC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 307 RTKLSIIPQEPTLF-RGSVRTNLDPLG---M--YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 307 r~~i~~V~Q~~~lF-~gTi~eNi~~~~---~--~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
|+.|+||||++.+| +.|++||+.+.. . .+ ++++.++++.+++.+++. ..+++. ...|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~----~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK---DRLDAP----AGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh---hhhcCC----cccCCHHHHH
Confidence 99999999999755 579999996421 1 11 345677778877754332 123333 4679999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhh
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
|++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 99999999999999999999999999999999999999877899999999999875 59999999999999999999997
Q ss_pred cc
Q 011713 456 KT 457 (479)
Q Consensus 456 ~~ 457 (479)
+.
T Consensus 234 ~~ 235 (250)
T PRK14247 234 TN 235 (250)
T ss_pred cC
Confidence 64
No 135
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.3e-48 Score=364.42 Aligned_cols=202 Identities=26% Similarity=0.396 Sum_probs=179.1
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++||+++|++ .++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++.+. ..+|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 578999999953 4699999999999999999999999999999999999999999999999988764 567889999
Q ss_pred EcCCCcccc-ccHHhhcCCC---CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 011713 313 IPQEPTLFR-GSVRTNLDPL---GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (479)
Q Consensus 313 V~Q~~~lF~-gTi~eNi~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p 388 (479)
|||++.+|. .|++||+.+. ...+++++.++++..++.+...+. ...||||||||++||||++++|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 999998884 6999999642 123567788888999887765543 3579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEec
Q 011713 389 RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYD 449 (479)
Q Consensus 389 ~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G 449 (479)
++|||||||++||+.+.+.+.+.|++.. +++|+|++||++..+. .||++++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999998865 4799999999999886 49999999999999865
No 136
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-48 Score=374.42 Aligned_cols=219 Identities=26% Similarity=0.427 Sum_probs=191.1
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+++...+++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999964 459999999999999999999999999999999999999999999999999988888888899999
Q ss_pred EcCCCccccc-cHHhhcCCCC-----------CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 011713 313 IPQEPTLFRG-SVRTNLDPLG-----------MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 380 (479)
Q Consensus 313 V~Q~~~lF~g-Ti~eNi~~~~-----------~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlai 380 (479)
+||++.+|.+ |+.||+.++. ...++++.++++..++.++.... ...||||||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----------LTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----------cccCCHHHHHHHHH
Confidence 9999999877 9999997531 01234567777877776654443 36799999999999
Q ss_pred HHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhccC
Q 011713 381 GRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 381 ARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
|||++++|++|||||||++||+++...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~- 228 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP- 228 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH-
Confidence 999999999999999999999999999999998865 4799999999999875 5999999999999999999998753
Q ss_pred chHHHHH
Q 011713 459 SAFSKLV 465 (479)
Q Consensus 459 g~y~~l~ 465 (479)
..+.+.+
T Consensus 229 ~~~~~~~ 235 (255)
T PRK11231 229 GLLRTVF 235 (255)
T ss_pred HHHHHHh
Confidence 3445554
No 137
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.8e-48 Score=365.97 Aligned_cols=200 Identities=33% Similarity=0.492 Sum_probs=174.1
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEE
Q 011713 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (479)
Q Consensus 234 ~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V 313 (479)
+++||+++|++..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 47899999975334699999999999999999999999999999999999999999999999999888888899999999
Q ss_pred cCCC--ccccccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 314 PQEP--TLFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 314 ~Q~~--~lF~gTi~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
||++ .+++.|++||+.+.. ..+ ++++.++++..++.+++.+.| ..||||||||++||||+
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSP-----------FTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9998 367889999996421 122 234566777777766554433 68999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEccCchhhhc-CCEEEEEeCCE
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITD-SDMVMVLSYGE 444 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaHrl~~i~~-~D~I~vl~~G~ 444 (479)
+++|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999988753 7899999999999887 99999999985
No 138
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=6e-48 Score=384.13 Aligned_cols=221 Identities=28% Similarity=0.431 Sum_probs=186.0
Q ss_pred cEEEEeEEEEeCCC-----------CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCC
Q 011713 232 RIELEDLKVRYRPN-----------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 300 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~-----------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~ 300 (479)
-|+++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 48999999999631 2459999999999999999999999999999999999999999999999999998
Q ss_pred CCHHH---HhccceEEcCCC--ccc-cccHHhhcCC----C-CCCCH----HHHHHHHHHccHH-HHHHhCCcccccccc
Q 011713 301 MGLKD---LRTKLSIIPQEP--TLF-RGSVRTNLDP----L-GMYSD----NEIWEAMEKCQLK-ATISRLPMLLDSSVS 364 (479)
Q Consensus 301 ~~~~~---lr~~i~~V~Q~~--~lF-~gTi~eNi~~----~-~~~~~----~~i~~a~~~a~l~-~~i~~lp~G~~T~vg 364 (479)
++..+ +|++|+||+|+| .+| ..|+.|||.. . ...+. +.+.++++.+++. ++..+
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~---------- 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINR---------- 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcC----------
Confidence 87654 678999999999 477 4699999852 1 12333 3345566666662 22222
Q ss_pred CCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEe
Q 011713 365 DEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLS 441 (479)
Q Consensus 365 e~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~ 441 (479)
....||||||||++|||||+.+|++||+|||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||+
T Consensus 158 -~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 158 -YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 3367999999999999999999999999999999999999999999988754 7899999999999975 99999999
Q ss_pred CCEEEEecChhhhhcc-CchHHH
Q 011713 442 YGELVEYDLPSNLMKT-NSAFSK 463 (479)
Q Consensus 442 ~G~Ive~G~~~eLl~~-~g~y~~ 463 (479)
+|+|+|.|++++++++ ...|.+
T Consensus 237 ~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 237 LGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CCEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999999864 334544
No 139
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=6e-48 Score=370.18 Aligned_cols=211 Identities=22% Similarity=0.354 Sum_probs=182.4
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHH-hccce
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKLS 311 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~l-r~~i~ 311 (479)
|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.... |+.++
T Consensus 3 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 3 LYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 789999999964 359999999999999999999999999999999999999999999999999988776654 56799
Q ss_pred EEcCCCccccc-cHHhhcCCCCCC---------------CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHH
Q 011713 312 IIPQEPTLFRG-SVRTNLDPLGMY---------------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~~~~---------------~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQr 375 (479)
|++|++.+|.+ |++||+.+.... .++++.++++..++ +.........||||||
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~Ge~ 149 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL-----------ADEADRLAGLLSHGQK 149 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCC-----------chhhcCChhhCCHHHH
Confidence 99999999987 999999752110 12234444444443 3333444568999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhh
Q 011713 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 376 QRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eL 454 (479)
||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 150 qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 150 QWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999998
Q ss_pred hc
Q 011713 455 MK 456 (479)
Q Consensus 455 l~ 456 (479)
..
T Consensus 230 ~~ 231 (242)
T TIGR03411 230 QA 231 (242)
T ss_pred hc
Confidence 75
No 140
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-48 Score=370.20 Aligned_cols=212 Identities=26% Similarity=0.372 Sum_probs=181.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecC------CCCHHHH
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC------SMGLKDL 306 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~------~~~~~~l 306 (479)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+
T Consensus 3 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 3 IQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 789999999964 35999999999999999999999999999999999999999999999999873 2234577
Q ss_pred hccceEEcCCCccccc-cHHhhcCCC----CCCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHH
Q 011713 307 RTKLSIIPQEPTLFRG-SVRTNLDPL----GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 307 r~~i~~V~Q~~~lF~g-Ti~eNi~~~----~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
|++++|+||++.+|.+ |++||+... ...+ .+++.++++..++.++..+. ...||||||||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qr 149 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRF-----------PLHLSGGQQQR 149 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHH
Confidence 8899999999999975 999999631 1122 23345555555555544443 36899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhh
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl 455 (479)
++||||++++|++|||||||++||+++...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 9999999999999999999999999999999999988753 7999999999999864 9999999999999999999876
Q ss_pred cc
Q 011713 456 KT 457 (479)
Q Consensus 456 ~~ 457 (479)
+.
T Consensus 230 ~~ 231 (242)
T PRK11124 230 QP 231 (242)
T ss_pred Cc
Confidence 53
No 141
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-48 Score=365.63 Aligned_cols=208 Identities=26% Similarity=0.404 Sum_probs=181.7
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 578999999964 3599999999999999999999999999999999999999999999999988753 3577889999
Q ss_pred EcCCCccccc-cHHhhcCCC---CCC----CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 313 IPQEPTLFRG-SVRTNLDPL---GMY----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 313 V~Q~~~lF~g-Ti~eNi~~~---~~~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
+||++.+|.. |++||+.+. ... .++++.++++..++.++..+.| ..||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV-----------KTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999875 999999642 112 2346777888888876655443 47999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhh
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eL 454 (479)
+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999988653 6899999999998765 999999999999999998764
No 142
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-48 Score=367.28 Aligned_cols=203 Identities=27% Similarity=0.350 Sum_probs=176.4
Q ss_pred EEEEeEEEEeCCCC--CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccc
Q 011713 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (479)
Q Consensus 233 I~~~~vsf~Y~~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i 310 (479)
|+++|++++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999996421 469999999999999999999999999999999999999999999999998863 46789
Q ss_pred eEEcCCCcccc-ccHHhhcCCCC---CC----CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 011713 311 SIIPQEPTLFR-GSVRTNLDPLG---MY----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (479)
Q Consensus 311 ~~V~Q~~~lF~-gTi~eNi~~~~---~~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiAR 382 (479)
+||||++.+|. .|++||+.+.. .. .++++.++++..++.++..+.| ..||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999998 69999996421 11 2356677788888776665544 579999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhh-cCCEEEEEe--CCEEEEecCh
Q 011713 383 VLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTIT-DSDMVMVLS--YGELVEYDLP 451 (479)
Q Consensus 383 All~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~~D~I~vl~--~G~Ive~G~~ 451 (479)
|++++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|+ +|++++.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999998864 3789999999999765 599999999 7999998874
No 143
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-48 Score=373.18 Aligned_cols=217 Identities=25% Similarity=0.409 Sum_probs=184.6
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEECCeecCC--CCHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~-----p~~G~I~i~g~~i~~--~~~~ 304 (479)
.|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 3899999999964 359999999999999999999999999999999999997 489999999999864 3456
Q ss_pred HHhccceEEcCCCccccccHHhhcCCCC---CC-C----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~gTi~eNi~~~~---~~-~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
.+|+.++|++|++.+|+.|++||+.+.. .. . ++++.++++..+++... + .........|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~----~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---K----DNLDRNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---H----HHhccChhhCCHHHHH
Confidence 7788999999999999999999997421 11 1 23455566666653211 1 1223455789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhh
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl 455 (479)
|++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988778999999999998765 9999999999999999999987
Q ss_pred cc
Q 011713 456 KT 457 (479)
Q Consensus 456 ~~ 457 (479)
..
T Consensus 235 ~~ 236 (251)
T PRK14251 235 IA 236 (251)
T ss_pred hC
Confidence 54
No 144
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=3.3e-48 Score=389.47 Aligned_cols=213 Identities=24% Similarity=0.371 Sum_probs=188.8
Q ss_pred CccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCC--ceEEECCeecCCCCHHHHh
Q 011713 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN--GRILIDGLDICSMGLKDLR 307 (479)
Q Consensus 230 ~~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~--G~I~i~g~~i~~~~~~~lr 307 (479)
.+.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+||.++.+.++ .+
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 457999999999964 359999999999999999999999999999999999999999 999999999987665 46
Q ss_pred ccceEEcCCCccccc-cHHhhcCCC---CCCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHH
Q 011713 308 TKLSIIPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 308 ~~i~~V~Q~~~lF~g-Ti~eNi~~~---~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRla 379 (479)
+.|+||+|++.+|.. |++|||.+. ...+ ++++.++++..++.++..+.| ..||||||||+|
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHH
Confidence 789999999999976 999999752 1222 245777888888877776666 589999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC---CcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhh
Q 011713 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP---GSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 380 iARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~---~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
|||||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|++++.|+++++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999987654 68999999999986 459999999999999999999998
Q ss_pred cc
Q 011713 456 KT 457 (479)
Q Consensus 456 ~~ 457 (479)
+.
T Consensus 228 ~~ 229 (362)
T TIGR03258 228 DA 229 (362)
T ss_pred hC
Confidence 74
No 145
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=8.9e-48 Score=373.57 Aligned_cols=223 Identities=25% Similarity=0.414 Sum_probs=185.6
Q ss_pred EEEEeEEEEeCCC-------CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHH
Q 011713 233 IELEDLKVRYRPN-------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD 305 (479)
Q Consensus 233 I~~~~vsf~Y~~~-------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~ 305 (479)
|+++||+|+|++. .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++..+
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 356999999999999999999999999999999999999999999999999998876543
Q ss_pred ---HhccceEEcCCCc--cc-cccHHhhcCCC----CCC----CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCC
Q 011713 306 ---LRTKLSIIPQEPT--LF-RGSVRTNLDPL----GMY----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 371 (479)
Q Consensus 306 ---lr~~i~~V~Q~~~--lF-~gTi~eNi~~~----~~~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LS 371 (479)
+|+.|+||+|++. ++ ..|++||+.+. ... .++++.++++..++.+ .........||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhCC
Confidence 6788999999983 44 36999998521 111 2234555555555421 12234456899
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEe
Q 011713 372 VGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEY 448 (479)
Q Consensus 372 gGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~ 448 (479)
||||||++||||++.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||++..+. .||++++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999998753 789999999999987 5999999999999999
Q ss_pred cChhhhhc-cCchHHHHH
Q 011713 449 DLPSNLMK-TNSAFSKLV 465 (479)
Q Consensus 449 G~~~eLl~-~~g~y~~l~ 465 (479)
|++++++. .+..++.+.
T Consensus 233 g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 233 CDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred CCHHHHcCCCCHHHHHHH
Confidence 99999987 444454443
No 146
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.9e-48 Score=369.69 Aligned_cols=212 Identities=23% Similarity=0.375 Sum_probs=182.2
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCC--CHHHHhccc
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM--GLKDLRTKL 310 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~--~~~~lr~~i 310 (479)
++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... +...+|+.+
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 789999999963 4599999999999999999999999999999999999999999999999999864 345778899
Q ss_pred eEEcCCCcccc-ccHHhhcCCCC----CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 011713 311 SIIPQEPTLFR-GSVRTNLDPLG----MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (479)
Q Consensus 311 ~~V~Q~~~lF~-gTi~eNi~~~~----~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiA 381 (479)
+|++|++.+|. .|++||+.+.. ..+ ++++.++++..++.+.... ....||||||||++||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la 148 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHH-----------YPSELSGGQQQRVAIA 148 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhc-----------ChhhcCHHHHHHHHHH
Confidence 99999999886 59999996421 112 2334455555555444333 3468999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhcc
Q 011713 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 382 RAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
||++++|+++||||||++||+.+...+.+.|+++. +++|+|++||++..+.. ||+|++|++|++++.|+++++++.
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999999998875 47999999999999864 999999999999999999998764
No 147
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-47 Score=373.31 Aligned_cols=218 Identities=22% Similarity=0.433 Sum_probs=187.0
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEECCeecCC--CCH
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGL 303 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~-----p~~G~I~i~g~~i~~--~~~ 303 (479)
..|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 12 ~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 12 IIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred ceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 35999999999964 359999999999999999999999999999999999998 699999999999863 566
Q ss_pred HHHhccceEEcCCCccccccHHhhcCCCC---CC---CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHH
Q 011713 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 304 ~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~---~~---~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
..+|+.++||||++.+|..|++||+.+.. .. .++++.++++.+++...+ +.........||||||||
T Consensus 90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSLSGGQQQR 162 (269)
T ss_pred HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccCCHHHHHH
Confidence 78899999999999999999999997532 11 134556667776654332 223344557899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeC-----------CEE
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSY-----------GEL 445 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~-----------G~I 445 (479)
++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||++..+. .||+|++|++ |++
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~ 242 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYL 242 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceE
Confidence 9999999999999999999999999999999999998877899999999999875 5999999996 679
Q ss_pred EEecChhhhhcc
Q 011713 446 VEYDLPSNLMKT 457 (479)
Q Consensus 446 ve~G~~~eLl~~ 457 (479)
++.|+.+++...
T Consensus 243 ~~~~~~~~~~~~ 254 (269)
T PRK14259 243 VEFNETKKIFNS 254 (269)
T ss_pred EEeCCHHHHHhC
Confidence 999999999763
No 148
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=5.6e-48 Score=389.20 Aligned_cols=211 Identities=24% Similarity=0.381 Sum_probs=189.5
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.|+
T Consensus 14 ~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 89 (375)
T PRK09452 14 LVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVN 89 (375)
T ss_pred eEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 5999999999964 3599999999999999999999999999999999999999999999999999887654 57899
Q ss_pred EEcCCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 011713 312 IIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA 383 (479)
||+|++.+|.. |++|||.++- ..+ ++++.++++..++.++..+.| ..||||||||+|||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999976 9999997531 122 346778889999988888777 5799999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhhcc
Q 011713 384 LLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 384 ll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
|+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||++..+ ..||+|++|++|+|++.|++++++.+
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999988754 78999999999976 56999999999999999999999874
No 149
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-48 Score=391.00 Aligned_cols=211 Identities=24% Similarity=0.337 Sum_probs=186.0
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .+++|+
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEE
Confidence 3899999999964 359999999999999999999999999999999999999999999999999987665 357899
Q ss_pred EEcCCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 011713 312 IIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA 383 (479)
||+|++.+|.. |++||+.+.. ..+ ++++.++++..++.++..+.| ..||||||||++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 9999997531 122 345777888888876665554 5799999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhcc
Q 011713 384 LLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 384 ll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
|+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++++...
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999988643 789999999999765 5999999999999999999999864
No 150
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-48 Score=372.71 Aligned_cols=217 Identities=24% Similarity=0.417 Sum_probs=186.0
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhcc---CCC--CCceEEECCeecCCC--CHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL---VEP--ENGRILIDGLDICSM--GLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~---~~p--~~G~I~i~g~~i~~~--~~~ 304 (479)
.|+++||+++|++ +++|+|+||+|++||.++|+|+||||||||+++|+|+ ++| ++|+|.+||.++.+. +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 4899999999964 3599999999999999999999999999999999997 454 599999999998764 346
Q ss_pred HHhccceEEcCCCccccccHHhhcCCC-C--CC-----CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 305 DLRTKLSIIPQEPTLFRGSVRTNLDPL-G--MY-----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~gTi~eNi~~~-~--~~-----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
.+|+.++||||++.+|..|++||+.+. . .. .++++.++++.+++.+++. +........|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHHH
Confidence 788899999999999999999999642 1 11 1234566666666644432 2334556789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhh
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
|++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999999877899999999999875 59999999999999999999998
Q ss_pred cc
Q 011713 456 KT 457 (479)
Q Consensus 456 ~~ 457 (479)
+.
T Consensus 234 ~~ 235 (250)
T PRK14245 234 TN 235 (250)
T ss_pred cC
Confidence 64
No 151
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=3.5e-48 Score=364.93 Aligned_cols=201 Identities=26% Similarity=0.392 Sum_probs=175.4
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCH---HHHhcc
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KDLRTK 309 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~---~~lr~~ 309 (479)
|+++||+++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999643 459999999999999999999999999999999999999999999999999987764 347889
Q ss_pred ceEEcCCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 011713 310 LSIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (479)
Q Consensus 310 i~~V~Q~~~lF~g-Ti~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiA 381 (479)
++||+|++.+|.. |++||+.+.. ..+ ++++.++++..++.++..+.| ..||||||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHHH
Confidence 9999999999985 9999996421 122 345677788888776655444 47999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEE
Q 011713 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGEL 445 (479)
Q Consensus 382 RAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~I 445 (479)
||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||++..+.. ||+|++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999874 47999999999999875 999999999975
No 152
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-48 Score=372.88 Aligned_cols=217 Identities=21% Similarity=0.369 Sum_probs=186.1
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC--C---CCceEEECCeecCC--CCHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--P---ENGRILIDGLDICS--MGLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~--p---~~G~I~i~g~~i~~--~~~~ 304 (479)
-|+++||+|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 4899999999964 359999999999999999999999999999999999997 3 59999999999864 4456
Q ss_pred HHhccceEEcCCCccccccHHhhcCCCC---C-CCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---M-YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~gTi~eNi~~~~---~-~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
.+|+.++|+||++.+|.+|++||+.+.. . .++ +++.++++..++.+++. ..+......|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHHH
Confidence 7889999999999999999999996431 1 122 23455666666654432 2234456789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhh
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
|++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|++++++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999999877899999999999875 59999999999999999999987
Q ss_pred cc
Q 011713 456 KT 457 (479)
Q Consensus 456 ~~ 457 (479)
+.
T Consensus 243 ~~ 244 (259)
T PRK14274 243 SN 244 (259)
T ss_pred hC
Confidence 53
No 153
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=3.4e-48 Score=364.70 Aligned_cols=202 Identities=25% Similarity=0.418 Sum_probs=175.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. +++++|
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 578999999964 3599999999999999999999999999999999999999999999999999766543 568999
Q ss_pred EcCCCcccc-ccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 313 IPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 313 V~Q~~~lF~-gTi~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
+||++.+|. .|++||+.+.. ..+ ++++.++++..++.++....| ..||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-----------KQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999986 59999996421 122 234566777777766655444 57999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEec
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYD 449 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G 449 (479)
+++|+++||||||++||+.+...+.+.|+++. .++|+|++||++..+.. ||+|++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999998875 37899999999998765 9999999999999876
No 154
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-47 Score=373.47 Aligned_cols=218 Identities=25% Similarity=0.439 Sum_probs=189.3
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEECCeecCC--CCH
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGL 303 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~-----p~~G~I~i~g~~i~~--~~~ 303 (479)
..|+++||+|+|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++ |++|+|.+||.++.+ .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 35999999999953 459999999999999999999999999999999999997 589999999999864 345
Q ss_pred HHHhccceEEcCCCccccccHHhhcCCC-C--CC-C----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHH
Q 011713 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPL-G--MY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (479)
Q Consensus 304 ~~lr~~i~~V~Q~~~lF~gTi~eNi~~~-~--~~-~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQr 375 (479)
..+|+.|+||||++.+|..|++||+.+. . .. + ++++.++++..++.+++. +.+......||||||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGGQQ 169 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHHHH
Confidence 6788999999999999999999999752 1 11 1 345666777777755442 234556678999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhh
Q 011713 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 376 QRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eL 454 (479)
||++||||++++|++|||||||++||+.+...+.+.|+++.++.|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999877899999999999874 5999999999999999999999
Q ss_pred hcc
Q 011713 455 MKT 457 (479)
Q Consensus 455 l~~ 457 (479)
.+.
T Consensus 250 ~~~ 252 (267)
T PRK14237 250 FTN 252 (267)
T ss_pred hcC
Confidence 764
No 155
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=8.5e-48 Score=374.36 Aligned_cols=222 Identities=21% Similarity=0.340 Sum_probs=187.3
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHH---HHhc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLRT 308 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~---~lr~ 308 (479)
-|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+++.. .+|+
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 4899999999963 4599999999999999999999999999999999999999999999999999877653 3578
Q ss_pred cceEEcCCCccccc-cHHhhcCCC----CCCCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHH
Q 011713 309 KLSIIPQEPTLFRG-SVRTNLDPL----GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 309 ~i~~V~Q~~~lF~g-Ti~eNi~~~----~~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRla 379 (479)
.++|+||++.+|.+ |++||+.+. ...+. +++.++++..++.+.... ....||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL-----------MPSELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHH
Confidence 89999999999986 999999642 11222 345556666666544333 23579999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhc
Q 011713 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 380 iARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
||||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||++..+.. ||+|++|++|++++.|+++++++
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999988743 7899999999998765 99999999999999999999987
Q ss_pred cC-chHHHHHH
Q 011713 457 TN-SAFSKLVA 466 (479)
Q Consensus 457 ~~-g~y~~l~~ 466 (479)
.. ..++.++.
T Consensus 234 ~~~~~~~~~~~ 244 (269)
T PRK11831 234 NPDPRVRQFLD 244 (269)
T ss_pred CCcHHHHHHHH
Confidence 43 34455543
No 156
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=5.2e-48 Score=368.26 Aligned_cols=215 Identities=27% Similarity=0.446 Sum_probs=179.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHH-hccce
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKLS 311 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~l-r~~i~ 311 (479)
|+++||+++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+ |+.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 578999999963 359999999999999999999999999999999999999999999999999988776554 56799
Q ss_pred EEcCCCccccc-cHHhhcCCCC---CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcC
Q 011713 312 IIPQEPTLFRG-SVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~ 387 (479)
|+||++.+|.+ |++||+.+.. ....++..+ .+.++++.+ |++.........||||||||++||||++.+
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999987 9999997421 112211111 122333333 344444455578999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhc
Q 011713 388 NRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 388 p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 99999999999999999999999998865 4789999999997655 599999999999999999999865
No 157
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-48 Score=371.01 Aligned_cols=218 Identities=25% Similarity=0.428 Sum_probs=186.7
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCceEEECCeecCC--CCH
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGL 303 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-----~~G~I~i~g~~i~~--~~~ 303 (479)
+.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+ .+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 35899999999964 3599999999999999999999999999999999999863 69999999999875 455
Q ss_pred HHHhccceEEcCCCccccccHHhhcCCCC---CC-----CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHH
Q 011713 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (479)
Q Consensus 304 ~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~---~~-----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQr 375 (479)
..+|+.++||+|++.+|+.|++||+.+.. .. .++++.++++.+++.+.+. .........||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHH
Confidence 67899999999999999999999997431 11 1345566666776654332 223345578999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhh
Q 011713 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 376 QRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eL 454 (479)
||++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998754 999999999999999999998
Q ss_pred hcc
Q 011713 455 MKT 457 (479)
Q Consensus 455 l~~ 457 (479)
...
T Consensus 233 ~~~ 235 (250)
T PRK14240 233 FTN 235 (250)
T ss_pred HhC
Confidence 753
No 158
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-48 Score=377.92 Aligned_cols=215 Identities=27% Similarity=0.401 Sum_probs=182.0
Q ss_pred EEEEeEEEEeCCCC---CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCC----CHHH
Q 011713 233 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLKD 305 (479)
Q Consensus 233 I~~~~vsf~Y~~~~---~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~----~~~~ 305 (479)
|+++||+|+|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 88999999997432 3599999999999999999999999999999999999999999999999998764 3567
Q ss_pred HhccceEEcCCC--ccccccHHhhcCCCC---CCCHHH----HHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 306 LRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDNE----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 306 lr~~i~~V~Q~~--~lF~gTi~eNi~~~~---~~~~~~----i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
+|+.|+|+||++ .+|+.|++||+.+.. ..+.++ +.++++..++.+ .........|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 889999999998 688899999997421 123333 333444444431 1223345689999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhh
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eL 454 (479)
|++||||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999988753 789999999999885 5999999999999999999998
Q ss_pred hcc
Q 011713 455 MKT 457 (479)
Q Consensus 455 l~~ 457 (479)
++.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 764
No 159
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.4e-48 Score=364.96 Aligned_cols=200 Identities=23% Similarity=0.385 Sum_probs=176.1
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHH---HHhcc
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLRTK 309 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~---~lr~~ 309 (479)
|+++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++.. .+|+.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999533 4599999999999999999999999999999999999999999999999999887643 46889
Q ss_pred ceEEcCCCcccc-ccHHhhcCCCC---C----CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 011713 310 LSIIPQEPTLFR-GSVRTNLDPLG---M----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (479)
Q Consensus 310 i~~V~Q~~~lF~-gTi~eNi~~~~---~----~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiA 381 (479)
++|++|++.+|. .|++||+.+.. . ..+++++++++..++.++..+.| ..||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999996 59999996421 1 12456788888888877665554 47999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCE
Q 011713 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGE 444 (479)
Q Consensus 382 RAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~ 444 (479)
||++++|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999998864 47999999999999875 99999999985
No 160
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.2e-47 Score=371.07 Aligned_cols=215 Identities=26% Similarity=0.402 Sum_probs=184.5
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCC---------
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM--------- 301 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~--------- 301 (479)
+.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 4 NKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred ccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 45999999999964 3599999999999999999999999999999999999999999999999988642
Q ss_pred ----CHHHHhccceEEcCCCccccc-cHHhhcCCCC----CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCC
Q 011713 302 ----GLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLG----MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGE 368 (479)
Q Consensus 302 ----~~~~lr~~i~~V~Q~~~lF~g-Ti~eNi~~~~----~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~ 368 (479)
....+|+.++||||++.+|.. |++||+.++. ... ++++.++++..++.++.. .....
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~ 151 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKYPV 151 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCCcc
Confidence 134678899999999999975 9999996421 112 234556666666644431 23456
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEE
Q 011713 369 NWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELV 446 (479)
Q Consensus 369 ~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Iv 446 (479)
.||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||||++|++|+++
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 231 (257)
T PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999998875 47999999999999886 9999999999999
Q ss_pred EecChhhhhcc
Q 011713 447 EYDLPSNLMKT 457 (479)
Q Consensus 447 e~G~~~eLl~~ 457 (479)
+.|+++++.+.
T Consensus 232 ~~~~~~~~~~~ 242 (257)
T PRK10619 232 EEGAPEQLFGN 242 (257)
T ss_pred EeCCHHHhhhC
Confidence 99999998754
No 161
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-48 Score=371.68 Aligned_cols=217 Identities=24% Similarity=0.406 Sum_probs=185.1
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC--C---CCceEEECCeecCCC--CHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--P---ENGRILIDGLDICSM--GLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~--p---~~G~I~i~g~~i~~~--~~~ 304 (479)
-++++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++ | ++|+|.++|.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4899999999964 359999999999999999999999999999999999954 6 499999999998643 345
Q ss_pred HHhccceEEcCCCccccccHHhhcCCC----CCC----CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 305 DLRTKLSIIPQEPTLFRGSVRTNLDPL----GMY----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~gTi~eNi~~~----~~~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
.+|+.++||||++.+|+.|++||+.+. +.. .++++.++++.+++.+.+. +........|||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHHH
Confidence 778899999999999999999999642 111 1234555677776654332 2234456789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhh
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
|++||||++++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+. .||+|++|++|++++.|++++++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998877799999999999875 59999999999999999999997
Q ss_pred cc
Q 011713 456 KT 457 (479)
Q Consensus 456 ~~ 457 (479)
+.
T Consensus 236 ~~ 237 (252)
T PRK14239 236 MN 237 (252)
T ss_pred hC
Confidence 64
No 162
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-48 Score=373.48 Aligned_cols=216 Identities=23% Similarity=0.409 Sum_probs=185.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEECCeecCCCC--HHH
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICSMG--LKD 305 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~-----p~~G~I~i~g~~i~~~~--~~~ 305 (479)
-+++||+|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.+.+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 478999999963 459999999999999999999999999999999999986 47999999999987653 346
Q ss_pred HhccceEEcCCCccccccHHhhcCCCC---CC------CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 306 LRTKLSIIPQEPTLFRGSVRTNLDPLG---MY------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 306 lr~~i~~V~Q~~~lF~gTi~eNi~~~~---~~------~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
+|+.++||||++.+|.+|++||+.+.. .. .++++.++++..++.+++. +.+...+..|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHHH
Confidence 788999999999999999999996421 11 1244566677777654322 2334456789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhh
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
|++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|++++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999998877899999999999986 49999999999999999999998
Q ss_pred cc
Q 011713 456 KT 457 (479)
Q Consensus 456 ~~ 457 (479)
+.
T Consensus 237 ~~ 238 (251)
T PRK14244 237 KN 238 (251)
T ss_pred cC
Confidence 64
No 163
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.1e-47 Score=370.13 Aligned_cols=212 Identities=26% Similarity=0.387 Sum_probs=180.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCC--------HH
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG--------LK 304 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~--------~~ 304 (479)
++++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ..
T Consensus 4 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 4 IEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred EEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 899999999964 35999999999999999999999999999999999999999999999999987542 35
Q ss_pred HHhccceEEcCCCcccc-ccHHhhcCCC----CCCCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHH
Q 011713 305 DLRTKLSIIPQEPTLFR-GSVRTNLDPL----GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~-gTi~eNi~~~----~~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQr 375 (479)
.+|+.++||||++.+|. .|++||+.+. ..... +++.++++..++ +.........||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~Gq~ 150 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGL-----------AGKETSYPRRLSGGQQ 150 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------cchhhCChhhCChHHH
Confidence 67889999999999886 6999999642 11222 233344444443 3233345578999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhh
Q 011713 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSN 453 (479)
Q Consensus 376 QRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~e 453 (479)
||++||||++.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 151 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 230 (250)
T PRK11264 151 QRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKA 230 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999988754 7899999999999865 99999999999999999999
Q ss_pred hhcc
Q 011713 454 LMKT 457 (479)
Q Consensus 454 Ll~~ 457 (479)
+.+.
T Consensus 231 ~~~~ 234 (250)
T PRK11264 231 LFAD 234 (250)
T ss_pred HhcC
Confidence 8763
No 164
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-47 Score=369.47 Aligned_cols=217 Identities=25% Similarity=0.433 Sum_probs=186.9
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCC-----CceEEECCeecCC--CCHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-----NGRILIDGLDICS--MGLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~-----~G~I~i~g~~i~~--~~~~ 304 (479)
.|+++||+|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.+ .+..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 4899999999963 45999999999999999999999999999999999999997 6999999999865 3456
Q ss_pred HHhccceEEcCCCccccccHHhhcCCCC---CC-C----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~gTi~eNi~~~~---~~-~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
.+|+.++||||++.+|+.|++||+.+.. .. . ++.+.++++..++.+++. .........|||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHHH
Confidence 7899999999999999999999997531 11 1 233455566666654433 2345667889999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhh
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl 455 (479)
|++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988668999999999999876 7999999999999999999987
Q ss_pred cc
Q 011713 456 KT 457 (479)
Q Consensus 456 ~~ 457 (479)
..
T Consensus 235 ~~ 236 (251)
T PRK14249 235 SR 236 (251)
T ss_pred hC
Confidence 53
No 165
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=7e-48 Score=380.68 Aligned_cols=212 Identities=26% Similarity=0.423 Sum_probs=183.5
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++||
T Consensus 7 ~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ig 83 (306)
T PRK13537 7 PIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVG 83 (306)
T ss_pred eEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcEE
Confidence 5999999999964 45999999999999999999999999999999999999999999999999997754 45789999
Q ss_pred EEcCCCcccc-ccHHhhcCCCC---CCCHH----HHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 011713 312 IIPQEPTLFR-GSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (479)
Q Consensus 312 ~V~Q~~~lF~-gTi~eNi~~~~---~~~~~----~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA 383 (479)
||||++.+|. .|++||+.+.. ..+.. ++.++++..++ ++..+++++ .||||||||++||||
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~----~LS~G~~qrl~la~a 152 (306)
T PRK13537 84 VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKL-------ENKADAKVG----ELSGGMKRRLTLARA 152 (306)
T ss_pred EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chHhcCchh----hCCHHHHHHHHHHHH
Confidence 9999999986 59999997421 12322 33444554444 344566654 699999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhcc
Q 011713 384 LLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 384 ll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
|+++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||.++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 153 L~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 153 LVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999999999875 47999999999999865 999999999999999999999754
No 166
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-48 Score=377.95 Aligned_cols=217 Identities=24% Similarity=0.357 Sum_probs=180.7
Q ss_pred ccEEEEeEEEEeCCCC---CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCC----C-C
Q 011713 231 GRIELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS----M-G 302 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~---~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~----~-~ 302 (479)
+.|+++||+++|++.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5699999999996532 259999999999999999999999999999999999999999999999999853 2 4
Q ss_pred HHHHhccceEEcCCC--ccccccHHhhcCCCC---CCCHHH----HHHHHHHccHHHHHHhCCccccccccCCCCCCChh
Q 011713 303 LKDLRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDNE----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 373 (479)
Q Consensus 303 ~~~lr~~i~~V~Q~~--~lF~gTi~eNi~~~~---~~~~~~----i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgG 373 (479)
...+|+.|+||+|++ .+|..|++||+.+.. ..+.++ +.++++..++ |.++ .......||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~---~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PEDY---VKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------ChhH---hcCChhhCCHH
Confidence 567888999999998 478889999997431 123322 2233333333 2221 23445689999
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecC
Q 011713 374 QRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDL 450 (479)
Q Consensus 374 QrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~ 450 (479)
||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988753 789999999999875 599999999999999999
Q ss_pred hhhhhcc
Q 011713 451 PSNLMKT 457 (479)
Q Consensus 451 ~~eLl~~ 457 (479)
+++++..
T Consensus 235 ~~~~~~~ 241 (289)
T PRK13645 235 PFEIFSN 241 (289)
T ss_pred HHHHhcC
Confidence 9988653
No 167
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-47 Score=368.95 Aligned_cols=218 Identities=23% Similarity=0.442 Sum_probs=186.7
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC--C---CCceEEECCeecCCC--CH
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--P---ENGRILIDGLDICSM--GL 303 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~--p---~~G~I~i~g~~i~~~--~~ 303 (479)
+.|+++|++|+|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++ | ++|+|.++|.++... +.
T Consensus 3 ~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 3 NKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred cEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 45999999999963 459999999999999999999999999999999999986 4 699999999998653 44
Q ss_pred HHHhccceEEcCCCcccc-ccHHhhcCCC----CCCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhH
Q 011713 304 KDLRTKLSIIPQEPTLFR-GSVRTNLDPL----GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 374 (479)
Q Consensus 304 ~~lr~~i~~V~Q~~~lF~-gTi~eNi~~~----~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQ 374 (479)
..+|+.++||||++.+|. .|++||+.+. ...+ ++++.++++..++.+++.. ........|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~ 153 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGGQ 153 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHHH
Confidence 567899999999999998 5999999642 1112 2445667777776554432 2234467899999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhh
Q 011713 375 RQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSN 453 (479)
Q Consensus 375 rQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~e 453 (479)
|||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||++++|++|+|++.|++++
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999877899999999999885 599999999999999999999
Q ss_pred hhcc
Q 011713 454 LMKT 457 (479)
Q Consensus 454 Ll~~ 457 (479)
+...
T Consensus 234 ~~~~ 237 (252)
T PRK14256 234 IFTT 237 (252)
T ss_pred HHhC
Confidence 8753
No 168
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-48 Score=372.48 Aligned_cols=217 Identities=24% Similarity=0.395 Sum_probs=185.0
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCceEEECCeecCCC--CHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSM--GLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-----~~G~I~i~g~~i~~~--~~~ 304 (479)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 5999999999963 4599999999999999999999999999999999999985 799999999998653 245
Q ss_pred HHhccceEEcCCCccccccHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHH
Q 011713 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~gTi~eNi~~~~---~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
.+|+.++||+|++.+|+.|++||+.+.. ..+. +++.++++.+++.+++. +.++ .....||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~----~~~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS---DRLK----SPALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh---hhhc----CChhhCCHHHHHH
Confidence 6788999999999999999999997421 1222 34566677666643221 1223 3456899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhc
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||++..+. .||+|++|++|++++.|+++++..
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999998877899999999999875 499999999999999999999975
Q ss_pred c
Q 011713 457 T 457 (479)
Q Consensus 457 ~ 457 (479)
.
T Consensus 243 ~ 243 (258)
T PRK14268 243 N 243 (258)
T ss_pred C
Confidence 3
No 169
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=9.1e-48 Score=349.71 Aligned_cols=172 Identities=35% Similarity=0.615 Sum_probs=163.0
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++|++++|++...++++|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57899999997544569999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEE
Q 011713 313 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILI 392 (479)
Q Consensus 313 V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~ili 392 (479)
++|++.+|++|++||+ ||||||||++||||++++|++||
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcCCEEEEEeCCEE
Q 011713 393 LDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVLSYGEL 445 (479)
Q Consensus 393 LDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl~~G~I 445 (479)
|||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||++++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999998875 47899999999999999999999999975
No 170
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.3e-47 Score=365.12 Aligned_cols=210 Identities=27% Similarity=0.430 Sum_probs=178.4
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHH-Hhccce
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKLS 311 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~-lr~~i~ 311 (479)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+... ++++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 578999999964 35999999999999999999999999999999999999999999999999998877654 467899
Q ss_pred EEcCCCccccc-cHHhhcCCC-CC--CCH-HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc
Q 011713 312 IIPQEPTLFRG-SVRTNLDPL-GM--YSD-NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~-~~--~~~-~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~ 386 (479)
|+||++.+|.. |++||+.+. .. ... +...++++..+ +++.........||||||||++||||+++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999987 999999742 11 111 22233333322 12223334456899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhh
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eL 454 (479)
+|+++||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||+|+++++|++++.|+++++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999999999988754 7899999999999885 999999999999999999987
No 171
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-47 Score=374.19 Aligned_cols=213 Identities=28% Similarity=0.419 Sum_probs=183.0
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecC--CCCHHHHhccc
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDLRTKL 310 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~--~~~~~~lr~~i 310 (479)
|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. +.+...+|++|
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 789999999964 35999999999999999999999999999999999999999999999999985 34456788999
Q ss_pred eEEcCCCc--cccccHHhhcCCC---CCCCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 011713 311 SIIPQEPT--LFRGSVRTNLDPL---GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (479)
Q Consensus 311 ~~V~Q~~~--lF~gTi~eNi~~~---~~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiA 381 (479)
+||||++. +|..|+.+|+.+. ...+. +++.++++..++.++..+ ....||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQ-----------PIQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcC-----------CchhCCHHHHHHHHHH
Confidence 99999986 6778999999642 11222 345567777777655322 2367999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhccC
Q 011713 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 382 RAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
|||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||++..+. .||+|++|++|++++.|++++++...
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACT 227 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCh
Confidence 99999999999999999999999999999998864 4789999999999985 59999999999999999999987643
No 172
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-47 Score=379.83 Aligned_cols=225 Identities=25% Similarity=0.388 Sum_probs=187.5
Q ss_pred cEEEEeEEEEeCCC--------CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCH
Q 011713 232 RIELEDLKVRYRPN--------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL 303 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~--------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~ 303 (479)
-|+++|++++|+.. ...+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.++.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999631 2359999999999999999999999999999999999999999999999999998875
Q ss_pred H---HHhccceEEcCCCc--cccc-cHHhhcCC----CCCC----CHHHHHHHHHHccHHHHHHhCCccccccccCCCCC
Q 011713 304 K---DLRTKLSIIPQEPT--LFRG-SVRTNLDP----LGMY----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGEN 369 (479)
Q Consensus 304 ~---~lr~~i~~V~Q~~~--lF~g-Ti~eNi~~----~~~~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~ 369 (479)
. .+|++|+||+|+|. |+.. |+.+|+.. .... ..+++.++++.+++.+ .+++.. ...
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~~----p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDRY----PHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcCC----Ccc
Confidence 4 56789999999994 5553 88888741 1111 2345677777777742 223333 357
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCCEEE
Q 011713 370 WSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGELV 446 (479)
Q Consensus 370 LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G~Iv 446 (479)
||||||||++|||||+.+|++||+||||++||..+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988753 7899999999999975 9999999999999
Q ss_pred EecChhhhhcc-CchHH-HHHH
Q 011713 447 EYDLPSNLMKT-NSAFS-KLVA 466 (479)
Q Consensus 447 e~G~~~eLl~~-~g~y~-~l~~ 466 (479)
|.|+.+++++. ...|. .++.
T Consensus 235 e~g~~~~~~~~p~hpyt~~ll~ 256 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQALLS 256 (327)
T ss_pred EECCHHHHhcCCCCHHHHHHHH
Confidence 99999999874 23354 3443
No 173
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-47 Score=373.42 Aligned_cols=218 Identities=22% Similarity=0.377 Sum_probs=189.1
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCceEEECCeecCC--CCH
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGL 303 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-----~~G~I~i~g~~i~~--~~~ 303 (479)
+.|+++||+|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 24 ~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 24 TALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred cEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 46999999999964 3599999999999999999999999999999999999984 89999999999875 445
Q ss_pred HHHhccceEEcCCCccccccHHhhcCCC-C--CC-C----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHH
Q 011713 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPL-G--MY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (479)
Q Consensus 304 ~~lr~~i~~V~Q~~~lF~gTi~eNi~~~-~--~~-~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQr 375 (479)
..+|+.++|++|++.+|++|++||+.+. . .. . ++++.++++.+++.+++. +..+..+..||||||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGGQQ 174 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHHHH
Confidence 6789999999999999999999999642 1 11 1 234666777777655443 234556788999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhh
Q 011713 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 376 QRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eL 454 (479)
||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|+|++.|+++++
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 999999999999999999999999999999999999999877899999999999875 5999999999999999999998
Q ss_pred hcc
Q 011713 455 MKT 457 (479)
Q Consensus 455 l~~ 457 (479)
...
T Consensus 255 ~~~ 257 (272)
T PRK14236 255 FTS 257 (272)
T ss_pred hcC
Confidence 764
No 174
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-47 Score=365.71 Aligned_cols=218 Identities=24% Similarity=0.384 Sum_probs=179.6
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHH-Hhccc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL 310 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~-lr~~i 310 (479)
-|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+++... +|+.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 3899999999963 45999999999999999999999999999999999999999999999999998887654 67889
Q ss_pred eEEcCCCccccc-cHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 011713 311 SIIPQEPTLFRG-SVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (479)
Q Consensus 311 ~~V~Q~~~lF~g-Ti~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p 388 (479)
+|++|++.+|.+ |++||+.+.. ..+.++..+.+ .+.+..++...+ ........||||||||++||||++++|
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p 156 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFPRLHE-RRIQRAGTMSGGEQQMLAIGRALMSQP 156 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHHHHHH-HHhCchhhCCHHHHHHHHHHHHHHhCC
Confidence 999999999985 9999997532 12222222211 112222211111 112344689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhhcc
Q 011713 389 RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 389 ~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+ +.||++++|++|++++.|+++++...
T Consensus 157 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 9999999999999999999999998864 489999999999865 56999999999999999999999753
No 175
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-47 Score=376.78 Aligned_cols=215 Identities=30% Similarity=0.463 Sum_probs=181.9
Q ss_pred cEEEEeEEEEeCCCC---CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCC----CHH
Q 011713 232 RIELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~---~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~----~~~ 304 (479)
.|+++||+++|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997421 4599999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhccceEEcCCC--ccccccHHhhcCCCC---CCCH----HHHHHHHHHccHH-HHHHhCCccccccccCCCCCCChhH
Q 011713 305 DLRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSVGQ 374 (479)
Q Consensus 305 ~lr~~i~~V~Q~~--~lF~gTi~eNi~~~~---~~~~----~~i~~a~~~a~l~-~~i~~lp~G~~T~vge~G~~LSgGQ 374 (479)
..|+.++|++|+| .+|..|++|||.+.. ..+. +.+.++++.+++. ++. ......|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI-----------SKSPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-----------hCCcccCCHHH
Confidence 6788999999998 588889999996421 2222 2345555555553 222 23346899999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChh
Q 011713 375 RQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPS 452 (479)
Q Consensus 375 rQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~ 452 (479)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++. ++.|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999875 4789999999999875 59999999999999999999
Q ss_pred hhhcc
Q 011713 453 NLMKT 457 (479)
Q Consensus 453 eLl~~ 457 (479)
++.+.
T Consensus 231 ~~~~~ 235 (287)
T PRK13641 231 EIFSD 235 (287)
T ss_pred HHhcC
Confidence 98764
No 176
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.6e-47 Score=363.86 Aligned_cols=206 Identities=24% Similarity=0.339 Sum_probs=180.4
Q ss_pred cEEEEeEEEEeCCCC--CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHH---H
Q 011713 232 RIELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---L 306 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~---l 306 (479)
-|+++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 489999999997532 25999999999999999999999999999999999999999999999999998887654 2
Q ss_pred -hccceEEcCCCccccc-cHHhhcCCC---CCC----CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHH
Q 011713 307 -RTKLSIIPQEPTLFRG-SVRTNLDPL---GMY----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 307 -r~~i~~V~Q~~~lF~g-Ti~eNi~~~---~~~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
++.++|++|++.+|.+ |++||+.+. ... ..+++.++++..++.++..+.| ..||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3679999999999885 999999641 111 2356777888888877766555 4799999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhcCCEEEEEeCCEEEEe
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITDSDMVMVLSYGELVEY 448 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~ 448 (479)
++|||||+++|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999988742 7899999999999989999999999999874
No 177
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-47 Score=368.12 Aligned_cols=212 Identities=26% Similarity=0.401 Sum_probs=186.7
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+++...++++++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 3 LEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred EEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 789999999964 459999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EcCCCcc-ccccHHhhcCCCC-C--C----CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 313 IPQEPTL-FRGSVRTNLDPLG-M--Y----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 313 V~Q~~~l-F~gTi~eNi~~~~-~--~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
++|++.+ +..|++||+.+.. . . .++++.++++..++.++..+. ...||||||||++|||||
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRD-----------YPQLSGGEQQRVQLARVL 149 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCC-----------cccCCHHHHHHHHHHHHH
Confidence 9999987 6779999996531 1 1 234567777777776554443 368999999999999999
Q ss_pred h------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhh
Q 011713 385 L------KRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 385 l------~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
+ ++|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 9 5999999999999999999999999998875 4789999999999886 59999999999999999999987
Q ss_pred cc
Q 011713 456 KT 457 (479)
Q Consensus 456 ~~ 457 (479)
+.
T Consensus 230 ~~ 231 (258)
T PRK13548 230 TP 231 (258)
T ss_pred Ch
Confidence 63
No 178
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=7.2e-48 Score=362.46 Aligned_cols=197 Identities=29% Similarity=0.432 Sum_probs=170.2
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEE
Q 011713 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (479)
Q Consensus 234 ~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V 313 (479)
+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++. .+|+.++||
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 46899999964 35999999999999999999999999999999999999999999999998764 478899999
Q ss_pred cCCCcc---ccccHHhhcCCCCC-----------CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHH
Q 011713 314 PQEPTL---FRGSVRTNLDPLGM-----------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 314 ~Q~~~l---F~gTi~eNi~~~~~-----------~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRla 379 (479)
||++.+ |+.|++||+.+... ..++++.++++..++.++..+.| .+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----------GELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHH
Confidence 999986 66899999964211 12346777888888876655433 579999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEec
Q 011713 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYD 449 (479)
Q Consensus 380 iARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G 449 (479)
||||++++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999998865 57899999999998865 9999999886 56554
No 179
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.9e-47 Score=369.58 Aligned_cols=211 Identities=23% Similarity=0.366 Sum_probs=185.0
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+|+.++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 789999999964 459999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EcCCCc-cccccHHhhcCCCC----C-------CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 011713 313 IPQEPT-LFRGSVRTNLDPLG----M-------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 380 (479)
Q Consensus 313 V~Q~~~-lF~gTi~eNi~~~~----~-------~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlai 380 (479)
+||++. .+..|++||+.++. . ..++++.++++..++.+...+ ....||||||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----------DMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHH
Confidence 999986 45679999996431 0 112356667777776554333 336799999999999
Q ss_pred HHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhhc
Q 011713 381 GRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 381 ARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
|||++.+|+++||||||++||+.+...+.+.|++..+ ++|+|++||+++.+ +.||+|++|++|++++.|+++++..
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999998753 78999999999998 5699999999999999999999865
No 180
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-47 Score=367.26 Aligned_cols=216 Identities=25% Similarity=0.398 Sum_probs=181.9
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHH-Hhccce
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKLS 311 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~-lr~~i~ 311 (479)
|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+... +|+.++
T Consensus 4 l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 4 LTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred EEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 899999999964 45999999999999999999999999999999999999999999999999998877644 578899
Q ss_pred EEcCCCccccc-cHHhhcCCCC----CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc
Q 011713 312 IIPQEPTLFRG-SVRTNLDPLG----MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~~----~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~ 386 (479)
|+||++.+|.+ |++||+.+.. ..+.++.+ ..+.++++.+ |++.........||||||||++||||+++
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALAA 154 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHhc
Confidence 99999999985 9999997431 11222111 1223344443 34444455567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhhcc
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
+|++|||||||++||+.+...+.+.++++. +++|+|++||++..+ +.||+|++|++|++++.|++++++..
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 999999999999999999999999988764 479999999999766 55999999999999999999998753
No 181
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.3e-47 Score=363.55 Aligned_cols=209 Identities=23% Similarity=0.336 Sum_probs=180.9
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++...+|+.++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 4899999999963 35999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcCCCccccccHHhhcCCC----CC-CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc
Q 011713 312 IIPQEPTLFRGSVRTNLDPL----GM-YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (479)
Q Consensus 312 ~V~Q~~~lF~gTi~eNi~~~----~~-~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~ 386 (479)
|++|++.+|+.|++||+.+. .. ..++++.++++..++.+ +........||||||||++||||+++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999642 11 12334445555555421 22344557899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhcCCEEEEEe-CCEEEEecChh
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITDSDMVMVLS-YGELVEYDLPS 452 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~~D~I~vl~-~G~Ive~G~~~ 452 (479)
+|+++||||||++||+.+...+.+.|+++. .++|+|++||+++.++.||+|++|+ ++..+++|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999999874 3789999999999999999999994 67778889986
No 182
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-47 Score=359.28 Aligned_cols=200 Identities=28% Similarity=0.428 Sum_probs=176.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++|++++|++. . .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .|+.++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 5799999999642 2 39999999999999999999999999999999999999999999999987654 4678999
Q ss_pred EcCCCccccc-cHHhhcCCCC--C-----CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 313 IPQEPTLFRG-SVRTNLDPLG--M-----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 313 V~Q~~~lF~g-Ti~eNi~~~~--~-----~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
++|++.+|.+ |++||+.+.. . .+++++.++++..++.++..+.| ..||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999986 9999996421 1 13457888899999887777665 47999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEec
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYD 449 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G 449 (479)
+++|++|||||||++||+++...+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999875 37899999999998865 9999999999998765
No 183
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-47 Score=372.35 Aligned_cols=217 Identities=25% Similarity=0.462 Sum_probs=184.8
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEECCeecCC--CCHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~-----p~~G~I~i~g~~i~~--~~~~ 304 (479)
-|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 4999999999963 459999999999999999999999999999999999865 799999999999865 3445
Q ss_pred HHhccceEEcCCCccccccHHhhcCCC----CCC----CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 305 DLRTKLSIIPQEPTLFRGSVRTNLDPL----GMY----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~gTi~eNi~~~----~~~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
.+|++++|++|++.+|++|++||+.+. ... .++.+.++++..++.+.+. ........+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHHHH
Confidence 778899999999999999999999742 111 1234566666666532221 2234456789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhh
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
|++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999877799999999999775 59999999999999999999987
Q ss_pred cc
Q 011713 456 KT 457 (479)
Q Consensus 456 ~~ 457 (479)
..
T Consensus 252 ~~ 253 (268)
T PRK14248 252 TS 253 (268)
T ss_pred hC
Confidence 64
No 184
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-47 Score=369.82 Aligned_cols=217 Identities=24% Similarity=0.394 Sum_probs=184.8
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEECCeecCC--CCHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~-----p~~G~I~i~g~~i~~--~~~~ 304 (479)
-++++||+|+|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+..
T Consensus 24 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 24 VFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred EEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 5999999999964 359999999999999999999999999999999999997 699999999999853 4556
Q ss_pred HHhccceEEcCCCccccccHHhhcCCC---CCCCH-----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 305 DLRTKLSIIPQEPTLFRGSVRTNLDPL---GMYSD-----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~gTi~eNi~~~---~~~~~-----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
.+|+.++|+||++.+|..|++||+.+. ...++ +.+.++++..++.+ ++.......+..|||||||
T Consensus 102 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred HHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHHHHH
Confidence 788999999999999999999999742 12221 22344444443322 2223345566789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhh
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
|++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999877899999999999976 59999999999999999999997
Q ss_pred cc
Q 011713 456 KT 457 (479)
Q Consensus 456 ~~ 457 (479)
..
T Consensus 255 ~~ 256 (271)
T PRK14238 255 SN 256 (271)
T ss_pred cC
Confidence 64
No 185
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-47 Score=373.41 Aligned_cols=213 Identities=26% Similarity=0.425 Sum_probs=183.9
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCC--CCHHHHhccc
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS--MGLKDLRTKL 310 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~--~~~~~lr~~i 310 (479)
|+++||+++|++. +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. .+...+|+.|
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 7899999999643 359999999999999999999999999999999999999999999999999852 3345688999
Q ss_pred eEEcCCC--ccccccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 011713 311 SIIPQEP--TLFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (479)
Q Consensus 311 ~~V~Q~~--~lF~gTi~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiA 381 (479)
+|+||++ .+|..|++||+.+.. ..+ .+++.++++..++.++.... ...|||||+||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKP-----------PHHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCC-----------hhhCCHHHHHHHHHH
Confidence 9999998 578899999996421 122 24566677777775443332 357999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhcc
Q 011713 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 382 RAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
||++.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||++..+. .||+|++|++|++++.|+++++++.
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998753 799999999999886 5999999999999999999998764
No 186
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-47 Score=368.59 Aligned_cols=217 Identities=25% Similarity=0.435 Sum_probs=186.7
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCceEEECCeecCCC--CHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSM--GLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-----~~G~I~i~g~~i~~~--~~~ 304 (479)
-|+++||+|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 3899999999963 4599999999999999999999999999999999999984 899999999998753 345
Q ss_pred HHhccceEEcCCCccccccHHhhcCCCC----CC----CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG----MY----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~gTi~eNi~~~~----~~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
.+|+.++|++|++.+|..|++||+.+.. .. .++++.++++..++.+.+. .........|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHHH
Confidence 6788999999999999999999997421 11 1234566777777654432 2234556789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhh
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
|++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+ ..||+|++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999999999987789999999999976 459999999999999999999997
Q ss_pred cc
Q 011713 456 KT 457 (479)
Q Consensus 456 ~~ 457 (479)
+.
T Consensus 234 ~~ 235 (250)
T PRK14262 234 ER 235 (250)
T ss_pred hC
Confidence 64
No 187
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.9e-47 Score=371.54 Aligned_cols=226 Identities=27% Similarity=0.398 Sum_probs=189.5
Q ss_pred cEEEEeEEEEeCCC-------CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHH
Q 011713 232 RIELEDLKVRYRPN-------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~-------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~ 304 (479)
-|+++||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 38999999999521 24699999999999999999999999999999999999999999999999999866666
Q ss_pred HHhccceEEcCCCc--cccc-cHHhhcCCC----CCC----CHHHHHHHHHHccHH-HHHHhCCccccccccCCCCCCCh
Q 011713 305 DLRTKLSIIPQEPT--LFRG-SVRTNLDPL----GMY----SDNEIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSV 372 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~--lF~g-Ti~eNi~~~----~~~----~~~~i~~a~~~a~l~-~~i~~lp~G~~T~vge~G~~LSg 372 (479)
.+++.++||||++. ++.. |+.+|+.+. ... .++++.++++.+++. +..... ...|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYY-----------PHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcC-----------chhcCH
Confidence 66778999999985 4443 888887521 111 234677788888873 333222 257999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCCEEEEec
Q 011713 373 GQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGELVEYD 449 (479)
Q Consensus 373 GQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G 449 (479)
|||||++||||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998753 7899999999999986 9999999999999999
Q ss_pred Chhhhhcc--CchHHHHHHHH
Q 011713 450 LPSNLMKT--NSAFSKLVAEY 468 (479)
Q Consensus 450 ~~~eLl~~--~g~y~~l~~~~ 468 (479)
+++++... +..+++++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGH 253 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhc
Confidence 99999874 35566777644
No 188
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.8e-47 Score=362.27 Aligned_cols=207 Identities=27% Similarity=0.445 Sum_probs=172.1
Q ss_pred EEEEeEEEEeCCCC--CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCH---HHHh
Q 011713 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KDLR 307 (479)
Q Consensus 233 I~~~~vsf~Y~~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~---~~lr 307 (479)
|+++||+|+|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 259999999999999999999999999999999999999999999999999988774 5788
Q ss_pred ccceEEcCCC--ccc-cccHHhhcCCC----C-CCCHHHHH----HHHHHccHHHHHHhCCccccccccCCCCCCChhHH
Q 011713 308 TKLSIIPQEP--TLF-RGSVRTNLDPL----G-MYSDNEIW----EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (479)
Q Consensus 308 ~~i~~V~Q~~--~lF-~gTi~eNi~~~----~-~~~~~~i~----~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQr 375 (479)
++++|++|++ .++ ..|++||+.+. . ...++... ++++..++. +.........||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLP----------EEVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCC----------hhHhhCCchhcCHHHH
Confidence 8999999999 344 46999999531 1 11112111 233333331 1233445578999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEec
Q 011713 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYD 449 (479)
Q Consensus 376 QRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G 449 (479)
||++||||++.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999998754 789999999999987 59999999999998765
No 189
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-47 Score=367.19 Aligned_cols=204 Identities=25% Similarity=0.336 Sum_probs=179.3
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+.++
T Consensus 12 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~ 84 (257)
T PRK11247 12 PLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTR 84 (257)
T ss_pred cEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceE
Confidence 4999999999964 35999999999999999999999999999999999999999999999998763 5678999
Q ss_pred EEcCCCcccc-ccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCC
Q 011713 312 IIPQEPTLFR-GSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389 (479)
Q Consensus 312 ~V~Q~~~lF~-gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~ 389 (479)
|++|++.+|. .|++||+.+.. ...++++.++++..++.++..+. ...||||||||++|||||+++|+
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEW-----------PAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCC-----------hhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999988 59999997532 22356777888888876654433 36899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhh
Q 011713 390 ILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSN 453 (479)
Q Consensus 390 iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~e 453 (479)
+|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+.+.
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 220 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVDL 220 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeccccc
Confidence 999999999999999999999998864 3799999999999875 599999999999999988653
No 190
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2e-47 Score=361.69 Aligned_cols=203 Identities=26% Similarity=0.403 Sum_probs=175.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHH---Hhcc
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LRTK 309 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~---lr~~ 309 (479)
|+++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+++... +|+.
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999533 45999999999999999999999999999999999999999999999999998876543 6889
Q ss_pred ceEEcCCCccc-cccHHhhcCCC---CCCCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 011713 310 LSIIPQEPTLF-RGSVRTNLDPL---GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (479)
Q Consensus 310 i~~V~Q~~~lF-~gTi~eNi~~~---~~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiA 381 (479)
++|++|++.+| ..|++||+.+. ...++ +++.++++..++.++..+.| ..||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP-----------IQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------hhCCHHHHHHHHHH
Confidence 99999999874 67999999742 12232 24556777777766554433 68999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEE
Q 011713 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVE 447 (479)
Q Consensus 382 RAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive 447 (479)
||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999998864 47899999999999876 89999999999864
No 191
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-47 Score=370.75 Aligned_cols=212 Identities=23% Similarity=0.353 Sum_probs=187.8
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 7 ~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 7 RLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred EEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 5999999999974 35999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEcCCCcccc-ccHHhhcCCCC--C---------CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHH
Q 011713 312 IIPQEPTLFR-GSVRTNLDPLG--M---------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 312 ~V~Q~~~lF~-gTi~eNi~~~~--~---------~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRla 379 (479)
|+||++.+|. .|++||+.+.. . ..++++.++++..++.++..+. ...||||||||++
T Consensus 85 ~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Gq~qrv~ 153 (265)
T PRK10253 85 LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----------VDTLSGGQRQRAW 153 (265)
T ss_pred EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----------cccCChHHHHHHH
Confidence 9999999875 59999996421 1 1234567788888887654433 3689999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhc
Q 011713 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 380 iARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
||||++++|++|||||||++||+.+...+.+.|+++.+ ++|+|++||++..+. .||+|++|++|++++.|+++++..
T Consensus 154 laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 154 IAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999999999999999999988743 789999999999765 599999999999999999999875
No 192
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-47 Score=368.66 Aligned_cols=217 Identities=22% Similarity=0.424 Sum_probs=187.9
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEECCeecCC--CCHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~-----p~~G~I~i~g~~i~~--~~~~ 304 (479)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|++. |++|+|.++|.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 4899999999964 359999999999999999999999999999999999986 489999999999853 4566
Q ss_pred HHhccceEEcCCCccccccHHhhcCCCC---CC---CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHH
Q 011713 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~gTi~eNi~~~~---~~---~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRl 378 (479)
.+|++++||+|++.+|+.|++||+.+.. .. .++++.++++.+++.+++.. .......+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHHH
Confidence 7889999999999999899999997531 11 23456667788887665542 23445678999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEe---------CCEEEEe
Q 011713 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLS---------YGELVEY 448 (479)
Q Consensus 379 aiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~---------~G~Ive~ 448 (479)
+||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|+ +|+|++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 999999999999999999999999999999999999877899999999999875 599999998 8999999
Q ss_pred cChhhhhcc
Q 011713 449 DLPSNLMKT 457 (479)
Q Consensus 449 G~~~eLl~~ 457 (479)
|+++|+.+.
T Consensus 241 ~~~~~~~~~ 249 (264)
T PRK14243 241 DRTEKIFNS 249 (264)
T ss_pred CCHHHHHhC
Confidence 999999764
No 193
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-47 Score=378.10 Aligned_cols=223 Identities=19% Similarity=0.332 Sum_probs=183.9
Q ss_pred EEEEeEEEEeCCCC--CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC----CCCceEEECCeecCCCCHHHH
Q 011713 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE----PENGRILIDGLDICSMGLKDL 306 (479)
Q Consensus 233 I~~~~vsf~Y~~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~----p~~G~I~i~g~~i~~~~~~~l 306 (479)
++++||+++|+... ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.+||.|+.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 79999999996532 359999999999999999999999999999999999998 489999999999999987766
Q ss_pred hc----cceEEcCCCc--ccc-ccHHhhc----CCCCCC----CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCC
Q 011713 307 RT----KLSIIPQEPT--LFR-GSVRTNL----DPLGMY----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 371 (479)
Q Consensus 307 r~----~i~~V~Q~~~--lF~-gTi~eNi----~~~~~~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LS 371 (479)
++ .|+||||+|. ++. -|+.+|+ ...... ..+++.++++.+++.+... .+......||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPAS--------RLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhCCchhCC
Confidence 54 6999999995 443 2555544 321111 2355777788887753211 1233456899
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEe
Q 011713 372 VGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEY 448 (479)
Q Consensus 372 gGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~ 448 (479)
||||||++|||||+.+|++||+|||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||||+||++|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998753 789999999999985 5999999999999999
Q ss_pred cChhhhhcc-CchHHH
Q 011713 449 DLPSNLMKT-NSAFSK 463 (479)
Q Consensus 449 G~~~eLl~~-~g~y~~ 463 (479)
|+++++++. ...|.+
T Consensus 236 g~~~~~~~~p~hpyt~ 251 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQ 251 (326)
T ss_pred CCHHHHhhCCCChHHH
Confidence 999999863 334543
No 194
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-47 Score=385.50 Aligned_cols=211 Identities=23% Similarity=0.393 Sum_probs=186.4
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|++||.++.++++ .|+.|+
T Consensus 19 ~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig 94 (377)
T PRK11607 19 LLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPIN 94 (377)
T ss_pred eEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEE
Confidence 5999999999964 359999999999999999999999999999999999999999999999999987664 578899
Q ss_pred EEcCCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 011713 312 IIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA 383 (479)
||+|++.+|.. |++|||.+.. ..+ .+++.++++..++.++.++.| ..||||||||+|||||
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLARA 163 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALARS 163 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999976 9999997531 222 345677788888877666655 4799999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhhcc
Q 011713 384 LLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 384 ll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
|+++|++||||||||+||+.+...+.+.|+++. .+.|+|+|||+++.+ ..||+|++|++|+|++.|+++|++.+
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 999999999999999999999999988877654 378999999999975 56999999999999999999999874
No 195
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-47 Score=367.11 Aligned_cols=217 Identities=23% Similarity=0.386 Sum_probs=186.5
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCceEEECCeecCCC--CHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSM--GLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-----~~G~I~i~g~~i~~~--~~~ 304 (479)
-|+++||+|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.+. +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 4899999999963 3599999999999999999999999999999999999763 489999999999876 456
Q ss_pred HHhccceEEcCCCccccccHHhhcCCCC---CC-C----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~gTi~eNi~~~~---~~-~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
..|+.++|++|++.+|+.|++||+.+.. .. + ++++.++++.+++.+.+ .+.+......|||||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV-------KDRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-------HHHhhcChhhCCHHHHH
Confidence 7788999999999999999999997531 11 1 23455556665554332 23455667789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhh
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
|++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 99999999999999999999999999999999999998877899999999999986 59999999999999999999987
Q ss_pred cc
Q 011713 456 KT 457 (479)
Q Consensus 456 ~~ 457 (479)
..
T Consensus 237 ~~ 238 (253)
T PRK14261 237 EN 238 (253)
T ss_pred hC
Confidence 64
No 196
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-47 Score=360.30 Aligned_cols=209 Identities=23% Similarity=0.378 Sum_probs=185.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++||+++|++ . ..|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. .++.++|
T Consensus 2 l~~~~l~~~~~~--~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHH--L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECC--c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 789999999963 2 239999999999999999999999999999999999999999999999887654 3578999
Q ss_pred EcCCCccccc-cHHhhcCCC--CC-----CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 313 IPQEPTLFRG-SVRTNLDPL--GM-----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 313 V~Q~~~lF~g-Ti~eNi~~~--~~-----~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
+||++.+|.+ |++||+.+. .. ..++++.++++..++.+++.+.| ..||||||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999986 999999742 11 12456888999999988887776 47999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhccC
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||++..+.. ||+|++|++|++++.|++++++...
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 999999999999999999999999999988743 7899999999998765 9999999999999999999998654
No 197
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-47 Score=365.96 Aligned_cols=217 Identities=22% Similarity=0.399 Sum_probs=186.6
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCceEEECCeecCCC--CHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSM--GLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-----~~G~I~i~g~~i~~~--~~~ 304 (479)
.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 4899999999963 4599999999999999999999999999999999999985 799999999998653 345
Q ss_pred HHhccceEEcCCCccccccHHhhcCCCC---CC-C----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~gTi~eNi~~~~---~~-~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
.+|+.++|+||++.+|+.|++||+.+.. .. + ++++.++++.+++.+.+.. ........|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHHH
Confidence 6788999999999999999999997431 11 2 2345667777776443322 233455789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhh
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl 455 (479)
|++||||++++|++||||||||+||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988777999999999998765 9999999999999999999987
Q ss_pred cc
Q 011713 456 KT 457 (479)
Q Consensus 456 ~~ 457 (479)
..
T Consensus 235 ~~ 236 (251)
T PRK14270 235 LE 236 (251)
T ss_pred cC
Confidence 54
No 198
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-47 Score=366.46 Aligned_cols=216 Identities=24% Similarity=0.391 Sum_probs=186.4
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCceEEECCeecC-CCCHHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDIC-SMGLKD 305 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-----~~G~I~i~g~~i~-~~~~~~ 305 (479)
.++++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4899999999963 4599999999999999999999999999999999999996 5999999999986 456678
Q ss_pred HhccceEEcCCCccccccHHhhcCCCC---CCC-----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHH
Q 011713 306 LRTKLSIIPQEPTLFRGSVRTNLDPLG---MYS-----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 306 lr~~i~~V~Q~~~lF~gTi~eNi~~~~---~~~-----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
+|+.++|++|++.+|..|++||+.+.. ... ++++.++++.+++.+.+. +.+......||||||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHHH
Confidence 899999999999999999999997431 111 234455666666654332 23344456899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhc
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||++..+.. ||+|++|++|+|++.|+++++..
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999998778999999999998776 99999999999999999999865
No 199
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-47 Score=371.69 Aligned_cols=218 Identities=23% Similarity=0.422 Sum_probs=187.1
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEECCeecCC--CCH
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGL 303 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~-----p~~G~I~i~g~~i~~--~~~ 303 (479)
..|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.+ .+.
T Consensus 38 ~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 35999999999964 359999999999999999999999999999999999997 689999999999865 345
Q ss_pred HHHhccceEEcCCCccccccHHhhcCCCC---CC---CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHH
Q 011713 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 304 ~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~---~~---~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
..+|+.++||+|++.+|..|++||+.+.. .. .+++++++++..++.+.+.. .+......||||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQQR 188 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHHHH
Confidence 67889999999999999999999996421 11 24567777777776543322 2334557899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEE-EEeCCEEEEecChhhhh
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVM-VLSYGELVEYDLPSNLM 455 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~-vl~~G~Ive~G~~~eLl 455 (479)
++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||++..+.. |||++ +|++|+|++.|+++++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998777899999999999765 99975 57999999999999987
Q ss_pred cc
Q 011713 456 KT 457 (479)
Q Consensus 456 ~~ 457 (479)
+.
T Consensus 269 ~~ 270 (285)
T PRK14254 269 EN 270 (285)
T ss_pred hC
Confidence 53
No 200
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-47 Score=364.81 Aligned_cols=210 Identities=27% Similarity=0.395 Sum_probs=186.4
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++|++|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.+.+. .++.++|
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 579999999964 359999999999999999999999999999999999999999999999999987654 3678999
Q ss_pred EcCCCccccc-cHHhhcCCCC---CC----CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 313 IPQEPTLFRG-SVRTNLDPLG---MY----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 313 V~Q~~~lF~g-Ti~eNi~~~~---~~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
|+|++.+|.+ |++||+.+.. .. .++++.++++..++.+++.+.| ..||||||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999976 9999996321 11 2456777888888887776665 58999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhcc
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||++..+. .||+|++|++|++++.|+++++.+.
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999999999988753 799999999999875 4999999999999999999998764
No 201
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=3.5e-47 Score=363.40 Aligned_cols=210 Identities=26% Similarity=0.390 Sum_probs=182.4
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++|++|+|++ +++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++|
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 578999999974 359999999999999999999999999999999999999999999999999987653 4788999
Q ss_pred EcCCCccccc-cHHhhcCCCC---CC----CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 313 IPQEPTLFRG-SVRTNLDPLG---MY----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 313 V~Q~~~lF~g-Ti~eNi~~~~---~~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
+||++.+|++ |++||+.+.. .. .++++.++++..++.++..+. ..+|||||+||++||||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY-----------PNQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999997421 11 134456666666665554443 358999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhcc
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
+++|+++||||||++||+++...+.+.|.+..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999999988654 7999999999998755 999999999999999999999753
No 202
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-47 Score=367.10 Aligned_cols=219 Identities=24% Similarity=0.345 Sum_probs=181.5
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHH-hccc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKL 310 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~l-r~~i 310 (479)
-++++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+ |..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 4899999999963 459999999999999999999999999999999999999999999999999988876655 4569
Q ss_pred eEEcCCCccccc-cHHhhcCCCCC-C---------------CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChh
Q 011713 311 SIIPQEPTLFRG-SVRTNLDPLGM-Y---------------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 373 (479)
Q Consensus 311 ~~V~Q~~~lF~g-Ti~eNi~~~~~-~---------------~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgG 373 (479)
+|+||++.+|.+ |++||+.+... . .+++ .+. ...+.++++.+ |++.........||||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~l~~~--gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE-SEA--LDRAATWLERV--GLLEHANRQAGNLAYG 157 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccch-hHH--HHHHHHHHHhC--ChhhhhhCChhhCCHH
Confidence 999999999986 99999975210 0 0000 000 01122333333 4444455566789999
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCCEEEEecC
Q 011713 374 QRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGELVEYDL 450 (479)
Q Consensus 374 QrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~ 450 (479)
||||++||||++.+|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 237 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999988643 7899999999999855 99999999999999999
Q ss_pred hhhhhcc
Q 011713 451 PSNLMKT 457 (479)
Q Consensus 451 ~~eLl~~ 457 (479)
++++...
T Consensus 238 ~~~~~~~ 244 (255)
T PRK11300 238 PEEIRNN 244 (255)
T ss_pred HHHHhhC
Confidence 9988653
No 203
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-47 Score=386.31 Aligned_cols=199 Identities=27% Similarity=0.411 Sum_probs=177.1
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHH----hccceEEcCCCccccc-
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL----RTKLSIIPQEPTLFRG- 322 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~l----r~~i~~V~Q~~~lF~g- 322 (479)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.+++...+ |++++||+|++.+|..
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 38999999999999999999999999999999999999999999999999998877654 4689999999999975
Q ss_pred cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeC
Q 011713 323 SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDE 395 (479)
Q Consensus 323 Ti~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE 395 (479)
|++||+.+.. ..+ ++++.++++.+++.++..+.| .+||||||||++|||||+.+|++|||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999997421 112 356777888888877776665 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhcc
Q 011713 396 ATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 396 ~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
|||+||+.+.+.+++.|.++. .++|+|++||+++.+. .||+|++|++|+|++.|++++++..
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999998864 4799999999999875 5999999999999999999999864
No 204
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=3.1e-47 Score=376.42 Aligned_cols=212 Identities=25% Similarity=0.384 Sum_probs=181.1
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 4899999999964 3599999999999999999999999999999999999999999999999998764 356789999
Q ss_pred EEcCCCcccc-ccHHhhcCCC-C--CCCHH----HHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 011713 312 IIPQEPTLFR-GSVRTNLDPL-G--MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (479)
Q Consensus 312 ~V~Q~~~lF~-gTi~eNi~~~-~--~~~~~----~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA 383 (479)
||||++.+|. .|++||+.+. . ..+.+ ++.++++..++. +.+++.+ ..||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-------~~~~~~~----~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-------SKADVRV----ALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-------hHhcCch----hhCCHHHHHHHHHHHH
Confidence 9999999885 5999999632 1 23333 233444444443 3344444 4699999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhcc
Q 011713 384 LLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 384 ll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
|+++|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999998864 47899999999998864 999999999999999999999754
No 205
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-47 Score=369.33 Aligned_cols=217 Identities=26% Similarity=0.394 Sum_probs=186.1
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCceEEECCeecCCCC-HHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSMG-LKD 305 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-----~~G~I~i~g~~i~~~~-~~~ 305 (479)
.++++||+|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.+++ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 5899999999963 4599999999999999999999999999999999999986 7999999999998763 457
Q ss_pred HhccceEEcCCCccccccHHhhcCCCC----CCCHHHHH----HHHHHccHHHHHHhCCccccccccCCCCCCChhHHHH
Q 011713 306 LRTKLSIIPQEPTLFRGSVRTNLDPLG----MYSDNEIW----EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 306 lr~~i~~V~Q~~~lF~gTi~eNi~~~~----~~~~~~i~----~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
+|++++|+||++.+|+.|++||+.+.. ..+++++. ++++..++.+ .+++.+......||||||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWD-------AVKDRLSDSPFRLSGGQQQL 171 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCc-------hhhhHhhCCcccCCHHHHHH
Confidence 889999999999999999999997421 13444432 3344444432 22334556677899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhc
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|+|++.|+++++.+
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999988777999999999998764 99999999999999999999986
Q ss_pred c
Q 011713 457 T 457 (479)
Q Consensus 457 ~ 457 (479)
.
T Consensus 252 ~ 252 (276)
T PRK14271 252 S 252 (276)
T ss_pred C
Confidence 4
No 206
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-47 Score=368.29 Aligned_cols=217 Identities=23% Similarity=0.404 Sum_probs=187.4
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCceEEECCeecCC--CCHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-----~~G~I~i~g~~i~~--~~~~ 304 (479)
.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+ .+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 7 AIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred eEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 5999999999964 3599999999999999999999999999999999999986 48999999999864 4556
Q ss_pred HHhccceEEcCCCccccccHHhhcCCCC----CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG----MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~gTi~eNi~~~~----~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
.+|+.++||+|++.+|+.|++||+.+.. ..+ ++.+.++++.+++.+++..+ .......|||||||
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~G~~q 157 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK-------LNKSALGLSGGQQQ 157 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHHHH
Confidence 7889999999999999999999996421 112 23456778888876554322 23455789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEe-----CCEEEEecC
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLS-----YGELVEYDL 450 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~-----~G~Ive~G~ 450 (479)
|++||||++++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|+ +|++++.|+
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~ 237 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGV 237 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCC
Confidence 999999999999999999999999999999999999998778999999999999865 99999998 599999999
Q ss_pred hhhhhcc
Q 011713 451 PSNLMKT 457 (479)
Q Consensus 451 ~~eLl~~ 457 (479)
++++.+.
T Consensus 238 ~~~~~~~ 244 (259)
T PRK14260 238 TTQIFSN 244 (259)
T ss_pred HHHHhcC
Confidence 9999763
No 207
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-47 Score=365.31 Aligned_cols=217 Identities=23% Similarity=0.425 Sum_probs=188.2
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEECCeecCC--CCHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~-----p~~G~I~i~g~~i~~--~~~~ 304 (479)
.++++||++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||.++.. .+..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 3789999999963 459999999999999999999999999999999999874 489999999999875 3456
Q ss_pred HHhccceEEcCCCccccccHHhhcCCC-C--C-CC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 305 DLRTKLSIIPQEPTLFRGSVRTNLDPL-G--M-YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~gTi~eNi~~~-~--~-~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
.+|+.++|+||++.+|+.|++||+.+. . . .+ ++++.++++.+++.+++..+ +......|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHHH
Confidence 789999999999999999999999742 1 1 12 24466778888887665432 23446789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhh
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl 455 (479)
|++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||++..+.. ||++++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999998766 8999999999999999999997
Q ss_pred cc
Q 011713 456 KT 457 (479)
Q Consensus 456 ~~ 457 (479)
..
T Consensus 234 ~~ 235 (250)
T PRK14266 234 IN 235 (250)
T ss_pred hC
Confidence 54
No 208
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2e-47 Score=359.51 Aligned_cols=200 Identities=29% Similarity=0.478 Sum_probs=171.9
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCC--CCHHHHhccc
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS--MGLKDLRTKL 310 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~--~~~~~lr~~i 310 (479)
|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+|+.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 478999999964 459999999999999999999999999999999999999999999999999853 4556788999
Q ss_pred eEEcCCCcccc-ccHHhhcCCCC----CCCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 011713 311 SIIPQEPTLFR-GSVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (479)
Q Consensus 311 ~~V~Q~~~lF~-gTi~eNi~~~~----~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiA 381 (479)
+|+||++.+|. .|++||+.+.. ..+. +++.++++..++.+...+.| ..||||||||++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la 147 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP-----------AQLSGGQQQRVAIA 147 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc-----------cccCHHHHHHHHHH
Confidence 99999999987 59999996421 2222 34555666666655444433 68999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEE
Q 011713 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGEL 445 (479)
Q Consensus 382 RAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~I 445 (479)
||++++|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|+|
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999875 47899999999999865 999999999975
No 209
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.8e-47 Score=375.23 Aligned_cols=211 Identities=22% Similarity=0.371 Sum_probs=184.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
++++|++++|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +...+|++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999963 459999999999999999999999999999999999999999999999999977 44678899999
Q ss_pred EcCCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 313 IPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 313 V~Q~~~lF~g-Ti~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
+||++.+|.+ |++||+.+.. ..+ .+++.++++..++.++. ......||||||||++||||+
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-----------HKKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCchhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999996421 122 23455556665554433 333468999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhcc
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
+++|++|||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||||++|++|+++..|+++++.+.
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999998778999999999998765 999999999999999999998764
No 210
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-47 Score=358.24 Aligned_cols=200 Identities=28% Similarity=0.452 Sum_probs=171.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. .+|+.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 478999999963 459999999999999999999999999999999999999999999999988753 56789999
Q ss_pred EcCCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 313 IPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 313 V~Q~~~lF~g-Ti~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
++|++.+|.+ |++||+.+.. ..+ ++++.++++..++.++.. ....+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al 143 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-----------KRVEELSKGNQQKVQFIAAV 143 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-----------CcHhhCCHHHHHHHHHHHHH
Confidence 9999999875 9999996421 111 234555566655544433 33468999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEec
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYD 449 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G 449 (479)
+.+|+++||||||++||+.+...+.+.|++.. +++|+|++||++..+.. ||+|++|++|++++.|
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998864 47899999999998854 9999999999998764
No 211
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=9e-47 Score=375.83 Aligned_cols=227 Identities=24% Similarity=0.394 Sum_probs=185.9
Q ss_pred cEEEEeEEEEeCC--CCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEECCeecCCCCHHHH
Q 011713 232 RIELEDLKVRYRP--NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDL 306 (479)
Q Consensus 232 ~I~~~~vsf~Y~~--~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~---~G~I~i~g~~i~~~~~~~l 306 (479)
-++++|++++|+. ...++|+||||+|++||++||||+||||||||+++|+|+++|+ +|+|.+||.++.+++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 4899999999953 2235999999999999999999999999999999999999996 9999999999999987776
Q ss_pred h----ccceEEcCCC--cccc-ccHHhhcC----CCCCCCHH----HHHHHHHHccHHHHHHhCCccccccccCCCCCCC
Q 011713 307 R----TKLSIIPQEP--TLFR-GSVRTNLD----PLGMYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 371 (479)
Q Consensus 307 r----~~i~~V~Q~~--~lF~-gTi~eNi~----~~~~~~~~----~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LS 371 (479)
| +.|+||+|+| .++. -|+.+|+. .....+.+ ++.++++.+++ |++.+ .++.....||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~~-~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEARK-RMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChHH-HhcCCcccCC
Confidence 4 4799999999 4554 37777763 21222332 33444444443 43332 2456678899
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEe
Q 011713 372 VGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEY 448 (479)
Q Consensus 372 gGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~ 448 (479)
||||||++|||||+.+|++||+|||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988754 789999999999986 5999999999999999
Q ss_pred cChhhhhcc-CchHHH-HHH
Q 011713 449 DLPSNLMKT-NSAFSK-LVA 466 (479)
Q Consensus 449 G~~~eLl~~-~g~y~~-l~~ 466 (479)
|+++++.+. ...|.+ ++.
T Consensus 244 g~~~~i~~~p~~pyt~~l~~ 263 (330)
T PRK09473 244 GNARDVFYQPSHPYSIGLLN 263 (330)
T ss_pred CCHHHHHhCCCCHHHHHHHH
Confidence 999999873 334544 443
No 212
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-46 Score=366.24 Aligned_cols=219 Identities=22% Similarity=0.370 Sum_probs=188.9
Q ss_pred CCccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCceEEECCeecC----
Q 011713 229 SHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDIC---- 299 (479)
Q Consensus 229 ~~~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-----~~G~I~i~g~~i~---- 299 (479)
..+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 13 ~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 13 TQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 3456999999999964 3599999999999999999999999999999999999975 7999999998874
Q ss_pred CCCHHHHhccceEEcCCCccccccHHhhcCCCC---C-----CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCC
Q 011713 300 SMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG---M-----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 371 (479)
Q Consensus 300 ~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~---~-----~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LS 371 (479)
..+...+|+.++|++|++.+|.+|++||+.+.. . ..++++.++++.+++.+.+ .+.+......||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV-------KDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhh-------hHHHhCCcccCC
Confidence 334567889999999999999999999997421 1 1235667777777664433 233455567899
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecC
Q 011713 372 VGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDL 450 (479)
Q Consensus 372 gGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~ 450 (479)
|||+||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999998877899999999999985 599999999999999999
Q ss_pred hhhhhc
Q 011713 451 PSNLMK 456 (479)
Q Consensus 451 ~~eLl~ 456 (479)
++++..
T Consensus 244 ~~~~~~ 249 (265)
T PRK14252 244 TDTIFI 249 (265)
T ss_pred HHHHHh
Confidence 999875
No 213
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-47 Score=366.42 Aligned_cols=217 Identities=23% Similarity=0.426 Sum_probs=184.6
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCceEEECCeecCC--CCHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-----~~G~I~i~g~~i~~--~~~~ 304 (479)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 4899999999964 3599999999999999999999999999999999999974 69999999999853 4556
Q ss_pred HHhccceEEcCCCcccc-ccHHhhcCCC----CCCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHH
Q 011713 305 DLRTKLSIIPQEPTLFR-GSVRTNLDPL----GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~-gTi~eNi~~~----~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQr 375 (479)
.+|+.++|++|++.+|. .|++||+.+. ...+ ++++.++++..++.+++. .........||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHH
Confidence 78899999999999997 4999999632 1111 234566677777644332 223344578999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEe------CCEEEEe
Q 011713 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLS------YGELVEY 448 (479)
Q Consensus 376 QRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~------~G~Ive~ 448 (479)
||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|+ +|+|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 999999999999999999999999999999999999998877799999999999875 599999997 8999999
Q ss_pred cChhhhhcc
Q 011713 449 DLPSNLMKT 457 (479)
Q Consensus 449 G~~~eLl~~ 457 (479)
|++++++..
T Consensus 235 ~~~~~~~~~ 243 (258)
T PRK14241 235 DDTEKIFSN 243 (258)
T ss_pred CCHHHHHhC
Confidence 999999763
No 214
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-47 Score=364.39 Aligned_cols=217 Identities=25% Similarity=0.420 Sum_probs=182.7
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCC-----CceEEECCeecCC--CCHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-----NGRILIDGLDICS--MGLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~-----~G~I~i~g~~i~~--~~~~ 304 (479)
-++++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.+ .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 3789999999963 45999999999999999999999999999999999999875 8999999999875 3455
Q ss_pred HHhccceEEcCCCccccc-cHHhhcCCC---CCC-CHHHHH----HHHHHccHHHHHHhCCccccccccCCCCCCChhHH
Q 011713 305 DLRTKLSIIPQEPTLFRG-SVRTNLDPL---GMY-SDNEIW----EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~g-Ti~eNi~~~---~~~-~~~~i~----~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQr 375 (479)
.+|+.++|++|++.+|.. |++||+.+. ... .+++.. +.++..++.+.+ ++.++++ ...||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~----~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKTP----ATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcCC----cccCCHHHH
Confidence 788899999999999985 999999642 111 233322 333444443322 2334444 467999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhh
Q 011713 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 376 QRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eL 454 (479)
||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999875 999999999999999999999
Q ss_pred hcc
Q 011713 455 MKT 457 (479)
Q Consensus 455 l~~ 457 (479)
+..
T Consensus 235 ~~~ 237 (252)
T PRK14272 235 FTN 237 (252)
T ss_pred HhC
Confidence 864
No 215
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-46 Score=364.26 Aligned_cols=217 Identities=19% Similarity=0.299 Sum_probs=189.5
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCceEEECCeecCCC--CHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSM--GLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-----~~G~I~i~g~~i~~~--~~~ 304 (479)
.+.+++++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++... ...
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 3899999999963 4599999999999999999999999999999999999987 799999999998653 445
Q ss_pred HHhccceEEcCCCccccccHHhhcCCCCC------CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHH
Q 011713 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~------~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRl 378 (479)
.+|+.++|+||++.+|..|+.||+.+... ...+++.++++.+++.+.+.. ..++...+|||||+||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHHH
Confidence 67889999999999999999999975311 123567888888887665543 23455678999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEe--------CCEEEEec
Q 011713 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLS--------YGELVEYD 449 (479)
Q Consensus 379 aiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~--------~G~Ive~G 449 (479)
+||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 999999999999999999999999999999999999877899999999999875 599999996 89999999
Q ss_pred Chhhhhcc
Q 011713 450 LPSNLMKT 457 (479)
Q Consensus 450 ~~~eLl~~ 457 (479)
+++++++.
T Consensus 239 ~~~~~~~~ 246 (261)
T PRK14263 239 PTAQIFQN 246 (261)
T ss_pred CHHHHHhC
Confidence 99999864
No 216
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=6.2e-47 Score=363.41 Aligned_cols=212 Identities=25% Similarity=0.301 Sum_probs=176.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhcc--CCCCCceEEECCeecCCCCHHHH-hcc
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDL-RTK 309 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~--~~p~~G~I~i~g~~i~~~~~~~l-r~~ 309 (479)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++..++.... |..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 578999999963 4599999999999999999999999999999999999 47999999999999988887665 445
Q ss_pred ceEEcCCCccccc-cHHhhcCCC-C---C------CC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhH
Q 011713 310 LSIIPQEPTLFRG-SVRTNLDPL-G---M------YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 374 (479)
Q Consensus 310 i~~V~Q~~~lF~g-Ti~eNi~~~-~---~------~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQ 374 (479)
++||+|++.+|.+ |++||+.+. . . .+ ++++.++++..++.+.. .+..++ ..|||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LS~G~ 149 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN---EGFSGGE 149 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc---cCcCHHH
Confidence 9999999999986 899998531 0 0 11 13344555555543211 122221 2599999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc--CCEEEEEeCCEEEEecCh
Q 011713 375 RQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD--SDMVMVLSYGELVEYDLP 451 (479)
Q Consensus 375 rQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~--~D~I~vl~~G~Ive~G~~ 451 (479)
|||++||||++++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 150 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (243)
T TIGR01978 150 KKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV 229 (243)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCH
Confidence 999999999999999999999999999999999999999875 47899999999999876 799999999999999999
Q ss_pred hhhh
Q 011713 452 SNLM 455 (479)
Q Consensus 452 ~eLl 455 (479)
+++.
T Consensus 230 ~~~~ 233 (243)
T TIGR01978 230 ELAK 233 (243)
T ss_pred HHhc
Confidence 8654
No 217
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=8.9e-47 Score=354.95 Aligned_cols=201 Identities=23% Similarity=0.409 Sum_probs=178.0
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
++++||+++|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ .+|+.++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999962 568999999999999999999999999999999999999999999999987654 46788999
Q ss_pred EcCCCccccc-cHHhhcCCC--CC-----CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 313 IPQEPTLFRG-SVRTNLDPL--GM-----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 313 V~Q~~~lF~g-Ti~eNi~~~--~~-----~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
|+|++.+|.+ |++||+.+. .. ..++++.++++..++.+...+.| ..||||||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999975 999999632 11 13456788899999988777766 37999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecC
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDL 450 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~ 450 (479)
+++|+++||||||++||+++...+.+.|++..+ ++|+|++||++..+. .||++++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999998753 789999999999876 599999999999999874
No 218
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.4e-46 Score=364.81 Aligned_cols=222 Identities=22% Similarity=0.314 Sum_probs=187.1
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEECCeecCCC-----CH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSM-----GL 303 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~---~G~I~i~g~~i~~~-----~~ 303 (479)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 3899999999963 45999999999999999999999999999999999999986 49999999998654 34
Q ss_pred HHHhccceEEcCCCccccc-cHHhhcCCCCC---------------CCHHHHHHHHHHccHHHHHHhCCccccccccCCC
Q 011713 304 KDLRTKLSIIPQEPTLFRG-SVRTNLDPLGM---------------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEG 367 (479)
Q Consensus 304 ~~lr~~i~~V~Q~~~lF~g-Ti~eNi~~~~~---------------~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G 367 (479)
..+|+.++|+||++.+|.+ |++||+.+... ...+++.++++..++.++... ..
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------RV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------Cc
Confidence 5678899999999998885 99999964210 113456677777777655443 33
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhh-hcCCEEEEEeCCE
Q 011713 368 ENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTI-TDSDMVMVLSYGE 444 (479)
Q Consensus 368 ~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~~D~I~vl~~G~ 444 (479)
..||||||||++||||++.+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+ +.||+|++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 5799999999999999999999999999999999999999999999875 379999999999975 5699999999999
Q ss_pred EEEecChhhhhccCchHHHHHHHH
Q 011713 445 LVEYDLPSNLMKTNSAFSKLVAEY 468 (479)
Q Consensus 445 Ive~G~~~eLl~~~g~y~~l~~~~ 468 (479)
+++.|+++++ ......++|...
T Consensus 231 i~~~g~~~~~--~~~~~~~~~~~~ 252 (262)
T PRK09984 231 VFYDGSSQQF--DNERFDHLYRSI 252 (262)
T ss_pred EEEeCCHHHh--ccHHHHHHHhhh
Confidence 9999999996 334456665543
No 219
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=6e-47 Score=377.98 Aligned_cols=212 Identities=26% Similarity=0.424 Sum_probs=182.3
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
-|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..+|+.|+
T Consensus 41 ~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 5999999999964 35999999999999999999999999999999999999999999999999997654 56889999
Q ss_pred EEcCCCcccc-ccHHhhcCCCC---CCCHHH----HHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 011713 312 IIPQEPTLFR-GSVRTNLDPLG---MYSDNE----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (479)
Q Consensus 312 ~V~Q~~~lF~-gTi~eNi~~~~---~~~~~~----i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA 383 (479)
|+||++.+|. .|++||+.+.. ..+.++ +.++++..+ |++..++.+ ..||||||||++||||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-------L~~~~~~~~----~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR-------LESKADARV----SDLSGGMKRRLTLARA 186 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------CchhhCCCh----hhCCHHHHHHHHHHHH
Confidence 9999999874 59999997421 123222 333344333 444556665 4799999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhcc
Q 011713 384 LLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 384 ll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
|+.+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||+|++|++|+|+..|+.+++.+.
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999998875 47999999999999865 999999999999999999999753
No 220
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-46 Score=369.48 Aligned_cols=217 Identities=24% Similarity=0.364 Sum_probs=184.2
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEECCeecCCC--CHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICSM--GLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~-----p~~G~I~i~g~~i~~~--~~~ 304 (479)
.|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||.++... +..
T Consensus 39 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~ 116 (286)
T PRK14275 39 HVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV 116 (286)
T ss_pred EEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchH
Confidence 5899999999964 359999999999999999999999999999999999864 4999999999998653 334
Q ss_pred HHhccceEEcCCCccccccHHhhcCCCC---CC-C----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~gTi~eNi~~~~---~~-~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
.+|+.++||+|++.+|+.|++||+.+.. .. + ++++.++++..++.+.+. + ........|||||||
T Consensus 117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~----~~~~~~~~LSgGq~q 189 (286)
T PRK14275 117 LLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS---D----RLDKNALGLSGGQQQ 189 (286)
T ss_pred HhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---h----HhhCChhhCCHHHHH
Confidence 6788999999999999999999997531 11 1 234556666666543221 1 223445689999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhh
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998877789999999999976 49999999999999999999998
Q ss_pred cc
Q 011713 456 KT 457 (479)
Q Consensus 456 ~~ 457 (479)
+.
T Consensus 270 ~~ 271 (286)
T PRK14275 270 TN 271 (286)
T ss_pred hC
Confidence 64
No 221
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-46 Score=375.91 Aligned_cols=220 Identities=23% Similarity=0.406 Sum_probs=185.1
Q ss_pred EEEEeEEEEeCC--CCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC----CCCceEEECCeecCCCCHHHH
Q 011713 233 IELEDLKVRYRP--NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE----PENGRILIDGLDICSMGLKDL 306 (479)
Q Consensus 233 I~~~~vsf~Y~~--~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~----p~~G~I~i~g~~i~~~~~~~l 306 (479)
|+++|++++|+. ....+|+||||+|++||++||+|+||||||||+++|+|+.+ |++|+|.+||.++.+++...+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 899999999953 22459999999999999999999999999999999999986 589999999999998887765
Q ss_pred h----ccceEEcCCCcc--cc-ccHHhhcCC---C----C----C--CCHHHHHHHHHHccHHH---HHHhCCccccccc
Q 011713 307 R----TKLSIIPQEPTL--FR-GSVRTNLDP---L----G----M--YSDNEIWEAMEKCQLKA---TISRLPMLLDSSV 363 (479)
Q Consensus 307 r----~~i~~V~Q~~~l--F~-gTi~eNi~~---~----~----~--~~~~~i~~a~~~a~l~~---~i~~lp~G~~T~v 363 (479)
+ +.|+||+|+|.. +. -|+.+|+.. . . + ...+++.++++.+++.+ ...+.|
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p------- 156 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP------- 156 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc-------
Confidence 3 479999999973 33 488888842 0 0 0 01346777888888853 233333
Q ss_pred cCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEE
Q 011713 364 SDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVL 440 (479)
Q Consensus 364 ge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl 440 (479)
..||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||
T Consensus 157 ----~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm 232 (330)
T PRK15093 157 ----YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVL 232 (330)
T ss_pred ----hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 68999999999999999999999999999999999999999999998754 7899999999999965 9999999
Q ss_pred eCCEEEEecChhhhhcc-CchHHH
Q 011713 441 SYGELVEYDLPSNLMKT-NSAFSK 463 (479)
Q Consensus 441 ~~G~Ive~G~~~eLl~~-~g~y~~ 463 (479)
++|+|+|.|+.+++++. ...|.+
T Consensus 233 ~~G~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 233 YCGQTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred ECCEEEEECCHHHHHhCCCCHHHH
Confidence 99999999999999864 345654
No 222
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-45 Score=349.51 Aligned_cols=426 Identities=20% Similarity=0.243 Sum_probs=303.6
Q ss_pred ccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 3 FFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMR 82 (479)
Q Consensus 3 ~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (479)
-+++.++++++.++++|+..+...+ ..++.+.++++..+++.+.+.++|+++.++++..+++..+.....+.+..+.+.
T Consensus 98 rier~~~~rlla~L~~Dvr~ISf~~-s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~ 176 (546)
T COG4615 98 RIERLGSARLLAGLTSDVRNISFAF-SRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMA 176 (546)
T ss_pred HHHHhcccchhhhhcccccceeehH-hhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999999998443 456778888888889999999999999887776666666554444444444455
Q ss_pred HhhhcccchHHHHHHHHchHHHHHhccchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 011713 83 MNGTTKAPIVNFAAETSQGVVSIRAFKMMDMF--FENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL-IV 159 (479)
Q Consensus 83 ~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 159 (479)
...+...++.+..+..+.|.++++...-..+. .+.+...-+...+ +.............+...+....++.. ++
T Consensus 177 aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~---~~~~~n~f~~la~~~~ni~l~~lIGlvf~l 253 (546)
T COG4615 177 AARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRH---HIIRANTFHLLAVNWSNIMLLGLIGLVFWL 253 (546)
T ss_pred HHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHh---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677888999999999999987543322 2222211111111 111111110011111111122222221 11
Q ss_pred -HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeE
Q 011713 160 -LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (479)
Q Consensus 160 -~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~v 238 (479)
...+.-+......+......+..|+..+......+..+.+|.+||.++-..|+.... ....+ .|.-..|+++||
T Consensus 254 al~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~--~~~q~---~p~~~~lelrnv 328 (546)
T COG4615 254 ALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADF--PRPQA---FPDWKTLELRNV 328 (546)
T ss_pred HHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccC--CCCCc---CCcccceeeeee
Confidence 112222222222333334456677777888888889999999999987654322111 11111 122346999999
Q ss_pred EEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCc
Q 011713 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (479)
Q Consensus 239 sf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~ 318 (479)
.|+|++.. .-+..||++|++||.|-|+|.+||||||++++|.|+|.|++|+|++||.|++.-+++++|+-++-|+-|.+
T Consensus 329 rfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyh 407 (546)
T COG4615 329 RFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYH 407 (546)
T ss_pred eeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHh
Confidence 99998654 46889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 011713 319 LFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA 398 (479)
Q Consensus 319 lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TS 398 (479)
||+.++- +-..++++.+.+-++...+..... +.+|-=++ ..||-|||.|+|+--|++-+.||++|||=-+
T Consensus 408 LF~~ll~----~e~~as~q~i~~~LqrLel~~kts-l~d~~fs~-----~kLStGQkKRlAll~AllEeR~Ilv~DEWAA 477 (546)
T COG4615 408 LFDQLLG----PEGKASPQLIEKWLQRLELAHKTS-LNDGRFSN-----LKLSTGQKKRLALLLALLEERDILVLDEWAA 477 (546)
T ss_pred hhHhhhC----CccCCChHHHHHHHHHHHHhhhhc-ccCCcccc-----cccccchHHHHHHHHHHHhhCCeEEeehhhc
Confidence 9987651 112367777777666665554332 22332222 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhcCCEEEEEeCCEEEEe
Q 011713 399 SIDSATDAILQRIIREEF--PGSTVITIAHRVPTITDSDMVMVLSYGELVEY 448 (479)
Q Consensus 399 aLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~ 448 (479)
.=||.=.+.+.+.+--.. .|||++.|||+=.....|||++.|++|+++|.
T Consensus 478 DQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 478 DQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred cCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 999999988888764433 49999999999999999999999999999985
No 223
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-46 Score=364.97 Aligned_cols=217 Identities=21% Similarity=0.382 Sum_probs=187.4
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCceEEECCeecCC--CCHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-----~~G~I~i~g~~i~~--~~~~ 304 (479)
-|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 20 ~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 20 VFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred eEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 6999999999964 3599999999999999999999999999999999999864 69999999999864 3445
Q ss_pred HHhccceEEcCCCccccccHHhhcCCCCC------CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHH
Q 011713 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~------~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRl 378 (479)
.+|+.|+|+||++.+|+.|+.||+.+... ..++++.++++.+++.+++.. ........||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qrv 170 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQRL 170 (274)
T ss_pred HHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHHHH
Confidence 67899999999999999999999975311 123456677777777655432 22344578999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEe---------CCEEEEe
Q 011713 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLS---------YGELVEY 448 (479)
Q Consensus 379 aiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~---------~G~Ive~ 448 (479)
+|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||++++|+ +|++++.
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~ 250 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEF 250 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 999999999999999999999999999999999999877899999999999885 599999997 8999999
Q ss_pred cChhhhhcc
Q 011713 449 DLPSNLMKT 457 (479)
Q Consensus 449 G~~~eLl~~ 457 (479)
|+.+++...
T Consensus 251 g~~~~~~~~ 259 (274)
T PRK14265 251 SPTEQMFGS 259 (274)
T ss_pred CCHHHHHhC
Confidence 999999764
No 224
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=8.2e-47 Score=379.96 Aligned_cols=204 Identities=21% Similarity=0.291 Sum_probs=177.2
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCe----ecCCCCHHHHh----ccceEEcCCCcc
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL----DICSMGLKDLR----TKLSIIPQEPTL 319 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~----~i~~~~~~~lr----~~i~~V~Q~~~l 319 (479)
.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||. ++.+.+...+| ++|+||+|++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 4899999999999999999999999999999999999999999999996 67777665543 589999999999
Q ss_pred cc-ccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEE
Q 011713 320 FR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 391 (479)
Q Consensus 320 F~-gTi~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~il 391 (479)
|+ .|++||+.++. ..+ .+++.++++.+++.++..+.| ..||||||||++|||||+++|+||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 98 69999997431 122 345677888888877665544 469999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhhcc-CchHH
Q 011713 392 ILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLMKT-NSAFS 462 (479)
Q Consensus 392 iLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~-~g~y~ 462 (479)
|||||||+||+.+...+++.|.++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|++++++.+ ...|.
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~ 261 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYV 261 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHH
Confidence 99999999999999999999988753 79999999999986 56999999999999999999999864 34444
No 225
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-46 Score=370.90 Aligned_cols=218 Identities=27% Similarity=0.467 Sum_probs=187.0
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEECCeecCCC--CH
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICSM--GL 303 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~-----p~~G~I~i~g~~i~~~--~~ 303 (479)
..|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.+. +.
T Consensus 44 ~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 44 AKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred ceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 35999999999964 359999999999999999999999999999999999986 6899999999998753 45
Q ss_pred HHHhccceEEcCCCccccccHHhhcCCCCC--------------------CCHHHHHHHHHHccHHHHHHhCCccccccc
Q 011713 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPLGM--------------------YSDNEIWEAMEKCQLKATISRLPMLLDSSV 363 (479)
Q Consensus 304 ~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~--------------------~~~~~i~~a~~~a~l~~~i~~lp~G~~T~v 363 (479)
..+|+.++||+|++.+|++|++||+.+... ..++++.++++.+++.+ ++++.+
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~ 194 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD-------EVNDRL 194 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch-------hhhHHh
Confidence 678899999999999999999999974210 01234556666665533 334455
Q ss_pred cCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEE-EEEe
Q 011713 364 SDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMV-MVLS 441 (479)
Q Consensus 364 ge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I-~vl~ 441 (479)
......||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+| ++|+
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLT 274 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEec
Confidence 6667899999999999999999999999999999999999999999999998778999999999999764 9997 5789
Q ss_pred CCEEEEecChhhhhcc
Q 011713 442 YGELVEYDLPSNLMKT 457 (479)
Q Consensus 442 ~G~Ive~G~~~eLl~~ 457 (479)
+|++++.|+++++++.
T Consensus 275 ~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 275 GGELVEYDDTDKIFEN 290 (305)
T ss_pred CCEEEEeCCHHHHHhC
Confidence 9999999999998753
No 226
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-46 Score=364.08 Aligned_cols=217 Identities=24% Similarity=0.438 Sum_probs=186.9
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCC-----CceEEECCeecCC--CCHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-----NGRILIDGLDICS--MGLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~-----~G~I~i~g~~i~~--~~~~ 304 (479)
.|+++||+|+|++ +.+|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+..
T Consensus 7 ~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 7 AIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred eEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 5999999999964 35999999999999999999999999999999999999985 8999999999853 3456
Q ss_pred HHhccceEEcCCCccccccHHhhcCCCC---CC-C----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~gTi~eNi~~~~---~~-~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
.+|+.++|++|++.+|..|++||+.+.. .. + ++++.++++.+++.+++.. ..+.....|||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~q 157 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQQ 157 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHHH
Confidence 7889999999999999999999996421 11 2 2346667777777655443 234456789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhh-cCCEEEEEeC-----CEEEEe
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTIT-DSDMVMVLSY-----GELVEY 448 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~~D~I~vl~~-----G~Ive~ 448 (479)
|++||||++++|++|||||||++||+.+...+.+.|+++. .++|+|+|||++..+. .||+|++|++ |++++.
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence 9999999999999999999999999999999999998853 4899999999999886 5999999999 999999
Q ss_pred cChhhhhcc
Q 011713 449 DLPSNLMKT 457 (479)
Q Consensus 449 G~~~eLl~~ 457 (479)
|+++++...
T Consensus 238 ~~~~~~~~~ 246 (261)
T PRK14258 238 GLTKKIFNS 246 (261)
T ss_pred CCHHHHHhC
Confidence 999999763
No 227
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-46 Score=363.47 Aligned_cols=212 Identities=24% Similarity=0.347 Sum_probs=183.7
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCC--------CceEEECCeecCCCCHH
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE--------NGRILIDGLDICSMGLK 304 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~--------~G~I~i~g~~i~~~~~~ 304 (479)
|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||.++...+..
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 789999999964 35999999999999999999999999999999999999998 99999999999988888
Q ss_pred HHhccceEEcCCCc-cccccHHhhcCCCC--C------C---CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCCh
Q 011713 305 DLRTKLSIIPQEPT-LFRGSVRTNLDPLG--M------Y---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSV 372 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~-lF~gTi~eNi~~~~--~------~---~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSg 372 (479)
.+++.++||||++. +|..|++||+.+.. . . ..+.++++++..++.+ .++.....|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATA-----------LVGRDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCH
Confidence 88899999999986 57889999996431 1 1 1233555565655543 34445578999
Q ss_pred hHHHHHHHHHHhh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEE
Q 011713 373 GQRQLFCLGRVLL---------KRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVL 440 (479)
Q Consensus 373 GQrQRlaiARAll---------~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl 440 (479)
|||||++||||++ .+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999 59999999999999999999999999998753 789999999999886 59999999
Q ss_pred eCCEEEEecChhhhhcc
Q 011713 441 SYGELVEYDLPSNLMKT 457 (479)
Q Consensus 441 ~~G~Ive~G~~~eLl~~ 457 (479)
++|+|++.|++++++..
T Consensus 229 ~~G~i~~~g~~~~~~~~ 245 (272)
T PRK13547 229 ADGAIVAHGAPADVLTP 245 (272)
T ss_pred ECCeEEEecCHHHHcCH
Confidence 99999999999998763
No 228
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-46 Score=357.88 Aligned_cols=209 Identities=26% Similarity=0.450 Sum_probs=184.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++|++++|++ + +|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.+.+. .++.++|
T Consensus 1 l~~~~l~~~~~~--~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE--F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC--c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 578999999964 3 8999999999999999999999999999999999999999999999999987654 3788999
Q ss_pred EcCCCcccc-ccHHhhcCCC-C--CC----CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 313 IPQEPTLFR-GSVRTNLDPL-G--MY----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 313 V~Q~~~lF~-gTi~eNi~~~-~--~~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
++|++.+|. .|++||+.+. . .. .++++.++++..++.+++.+.| ..||||||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHHH
Confidence 999999995 6999999642 1 11 2345677888888877766554 57999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhcc
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
+++|+++||||||++||+.+.+.+.+.++++.. ++|+|++||++..+.. ||+|++|++|++++.|+++++++.
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999999999999999999999988653 7999999999998765 999999999999999999998764
No 229
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4.9e-46 Score=360.12 Aligned_cols=224 Identities=23% Similarity=0.393 Sum_probs=182.7
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCee-----cCCCCHHH-
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD-----ICSMGLKD- 305 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~-----i~~~~~~~- 305 (479)
-|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +.+++...
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 4899999999964 359999999999999999999999999999999999999999999999998 87776654
Q ss_pred ---HhccceEEcCCCc--ccc-ccHHhhcCC----CCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHH
Q 011713 306 ---LRTKLSIIPQEPT--LFR-GSVRTNLDP----LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (479)
Q Consensus 306 ---lr~~i~~V~Q~~~--lF~-gTi~eNi~~----~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQr 375 (479)
+|+.++||||++. ++. .|+.+|+.. ....+..++.+ .++++++.++-+ ++.+...+..||||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LS~Gq~ 157 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEID-AARIDDLPTTFSGGMQ 157 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCC-hhHHhCCCccCCHHHH
Confidence 3567999999984 443 478888742 11112122211 134555555321 1345566789999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChh
Q 011713 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPS 452 (479)
Q Consensus 376 QRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~ 452 (479)
||++||||++++|++|||||||++||+.+...+.+.|++..+ +.|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 158 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 237 (258)
T PRK11701 158 QRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTD 237 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999988643 789999999999997 59999999999999999999
Q ss_pred hhhccC-chHHH
Q 011713 453 NLMKTN-SAFSK 463 (479)
Q Consensus 453 eLl~~~-g~y~~ 463 (479)
++.... ..|.+
T Consensus 238 ~~~~~~~~~~~~ 249 (258)
T PRK11701 238 QVLDDPQHPYTQ 249 (258)
T ss_pred HHhcCCCCHHHH
Confidence 998643 23443
No 230
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=1.2e-43 Score=366.18 Aligned_cols=410 Identities=20% Similarity=0.198 Sum_probs=293.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHH---------------HHHHHHHHHHHHHHHHHHHHH
Q 011713 14 TRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLI---------------VAIPTVIVAKYIQGYYLSSAR 78 (479)
Q Consensus 14 ~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l---------------~~~~~~~~~~~~~~~~~~~~~ 78 (479)
.|+..|+..+-.........++.++++++...+++..++-.+++ +++..+++..++...+.+...
T Consensus 152 QRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li 231 (604)
T COG4178 152 QRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLI 231 (604)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccc
Confidence 68999998887766666777788877777766666543332211 111112222233333444333
Q ss_pred HHHHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 011713 79 ELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLV---LRIETLQNLIILTAA 155 (479)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 155 (479)
.+.-......+.+...+.-.-++.+.|-.|+.|+...++..+.+....+...+.......+. .....+.. ++....
T Consensus 232 ~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~-v~P~li 310 (604)
T COG4178 232 RLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSV-VLPILI 310 (604)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHH-HHHHHh
Confidence 33333333445555566677778889999999987777666665555444433333332222 22222222 111111
Q ss_pred HHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC------CCCCCCCccCCCCCCCCCC
Q 011713 156 LLIVLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHL------PPEPPAIIEETKPPASWPS 229 (479)
Q Consensus 156 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~------~~e~~~~~~~~~~~~~~~~ 229 (479)
..-.+..|.++.|.++.....+..+...+.++...+..+....+.+.|+.++.+. +++.+..........+. .
T Consensus 311 ~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~-~ 389 (604)
T COG4178 311 AAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDN-A 389 (604)
T ss_pred ccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccccccccccc-c
Confidence 1223456888888777776666677777778888888889999999999998742 22211110000000000 1
Q ss_pred CccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhcc
Q 011713 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (479)
Q Consensus 230 ~~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~ 309 (479)
...|+|+|++..-|+.. +.|+++||++++||.+-|.|+||||||||++.|+|+||-.+|+|..-. -..
T Consensus 390 ~~~i~~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~ 457 (604)
T COG4178 390 DHGITLENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSA 457 (604)
T ss_pred cceeEEeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCc
Confidence 35799999999987655 699999999999999999999999999999999999999999987641 125
Q ss_pred ceEEcCCCccccccHHhhcCC-CC--CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc
Q 011713 310 LSIIPQEPTLFRGSVRTNLDP-LG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (479)
Q Consensus 310 i~~V~Q~~~lF~gTi~eNi~~-~~--~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~ 386 (479)
+-|+||.|++-.||+||=|++ .. +++|+++.+++.+|+|.++++++.+- +. =..-||+|||||||+||.+|+
T Consensus 458 ~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~-~~----W~~vLS~GEqQRlafARilL~ 532 (604)
T COG4178 458 LLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEE-DR----WDRVLSGGEQQRLAFARLLLH 532 (604)
T ss_pred eEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhcc-Cc----HhhhcChhHHHHHHHHHHHHc
Confidence 889999999999999999985 22 38999999999999999999997532 22 346799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeC
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSY 442 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~ 442 (479)
+|++++|||+|||||+++|..+++.+++.+++.|+|.|+||.......++.+-+++
T Consensus 533 kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 533 KPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred CCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence 99999999999999999999999999999999999999999998888887666543
No 231
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.4e-46 Score=361.35 Aligned_cols=228 Identities=22% Similarity=0.318 Sum_probs=187.2
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC----CCceEEECCeecCCCCHHHHh
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP----ENGRILIDGLDICSMGLKDLR 307 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p----~~G~I~i~g~~i~~~~~~~lr 307 (479)
.|+++||+|+| + .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+++.. +..+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 48999999999 2 3599999999999999999999999999999999999999 999999999998632 2235
Q ss_pred ccceEEcCCCc-ccc--ccHHhhcCC-----CCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHH
Q 011713 308 TKLSIIPQEPT-LFR--GSVRTNLDP-----LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 308 ~~i~~V~Q~~~-lF~--gTi~eNi~~-----~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRla 379 (479)
+.++||+|++. .|. .|+.+|+.. +....++++.++++.+++.++ ++.++.....||||||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHH
Confidence 67999999985 344 477777632 122345667778887776442 12344556789999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhc
Q 011713 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 380 iARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
||||++++|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+.+++++
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999999988643 789999999999985 599999999999999999999986
Q ss_pred cC--chHHHHHHHHHHhh
Q 011713 457 TN--SAFSKLVAEYRSSY 472 (479)
Q Consensus 457 ~~--g~y~~l~~~~~~~~ 472 (479)
.. ...+.++..+...|
T Consensus 231 ~~~~~~~~~~~~~~~~~~ 248 (254)
T PRK10418 231 APKHAVTRSLVSAHLALY 248 (254)
T ss_pred CCCCHHHHHHHHhhhhcc
Confidence 43 24455665544443
No 232
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-46 Score=361.89 Aligned_cols=217 Identities=23% Similarity=0.383 Sum_probs=184.1
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC--C---CCceEEECCeecCC--CCHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--P---ENGRILIDGLDICS--MGLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~--p---~~G~I~i~g~~i~~--~~~~ 304 (479)
-|+++||+++|+. +++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999964 459999999999999999999999999999999999975 5 59999999999864 3455
Q ss_pred HHhccceEEcCCCccccccHHhhcCCC---CCC-C----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 305 DLRTKLSIIPQEPTLFRGSVRTNLDPL---GMY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~gTi~eNi~~~---~~~-~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
.+|+.++|++|++.+|+.|+++|+.+. ... . ++++.++++.+++.+.+ ..........|||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCcccCCHHHHH
Confidence 678899999999999999999999642 111 1 23455556666654332 22234445789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhh
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
|++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+..++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999998877789999999999986 59999999999999999999987
Q ss_pred cc
Q 011713 456 KT 457 (479)
Q Consensus 456 ~~ 457 (479)
..
T Consensus 236 ~~ 237 (252)
T PRK14255 236 LN 237 (252)
T ss_pred cC
Confidence 64
No 233
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-46 Score=360.38 Aligned_cols=224 Identities=25% Similarity=0.399 Sum_probs=187.8
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECC------eecCCCCHHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG------LDICSMGLKD 305 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g------~~i~~~~~~~ 305 (479)
.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++.+++...
T Consensus 10 ~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 10 VFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred heeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 5999999999964 4599999999999999999999999999999999999999997666655 6777777778
Q ss_pred HhccceEEcCCCccccc-cHHhhcCCC---CCC-CH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 306 LRTKLSIIPQEPTLFRG-SVRTNLDPL---GMY-SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 306 lr~~i~~V~Q~~~lF~g-Ti~eNi~~~---~~~-~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
+|+.++|++|++.+|.+ |++||+.+. ... ++ +++.++++..++.+++. .........|||||||
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 160 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQQQ 160 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHHHH
Confidence 89999999999999976 999999742 111 22 23455666666644331 1233456789999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhh
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
|++||||++++|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+ +.||++++|++|++++.|+++++.
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999887789999999999998 569999999999999999999998
Q ss_pred cc-CchHHHH
Q 011713 456 KT-NSAFSKL 464 (479)
Q Consensus 456 ~~-~g~y~~l 464 (479)
+. ...|.+.
T Consensus 241 ~~~~~~~~~~ 250 (257)
T PRK14246 241 TSPKNELTEK 250 (257)
T ss_pred hCCCcHHHHH
Confidence 64 3335443
No 234
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.4e-46 Score=371.58 Aligned_cols=203 Identities=24% Similarity=0.409 Sum_probs=175.2
Q ss_pred EeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccc
Q 011713 241 RYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF 320 (479)
Q Consensus 241 ~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF 320 (479)
+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++|+||++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 4642 359999999999999999999999999999999999999999999999999876 4467889999999999999
Q ss_pred cc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEE
Q 011713 321 RG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILI 392 (479)
Q Consensus 321 ~g-Ti~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~ili 392 (479)
.. |++||+.+.. ..+ ++++.++++..++.+... +. ...||||||||++|||||+++|++||
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-------RP----VGTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-------Cc----hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 86 9999996421 122 234666777776654332 22 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhcc
Q 011713 393 LDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 393 LDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
|||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999999998875 47999999999999865 999999999999999999998754
No 235
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-46 Score=376.32 Aligned_cols=210 Identities=24% Similarity=0.377 Sum_probs=184.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCC----CHHHHhc
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLKDLRT 308 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~----~~~~lr~ 308 (479)
|++ ||+++|++ . .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. +...+|+
T Consensus 2 l~~-~l~k~~~~--~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGD--L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCC--E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 567 99999964 2 33 89999999999999999999999999999999999999999999998653 2445788
Q ss_pred cceEEcCCCcccc-ccHHhhcCCC-CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc
Q 011713 309 KLSIIPQEPTLFR-GSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (479)
Q Consensus 309 ~i~~V~Q~~~lF~-gTi~eNi~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~ 386 (479)
+++||+|++.+|+ .|++||+.+. ....++++.++++..++.++..+.| ..||||||||++|||||++
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHHHc
Confidence 9999999999997 5999999764 2345667888888888877666655 5899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhccC
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+.
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 9999999999999999999999999988754 6899999999997754 9999999999999999999998753
No 236
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=2.7e-46 Score=363.52 Aligned_cols=225 Identities=24% Similarity=0.382 Sum_probs=185.8
Q ss_pred EEEEeEEEEeCC-------CCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCH--
Q 011713 233 IELEDLKVRYRP-------NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-- 303 (479)
Q Consensus 233 I~~~~vsf~Y~~-------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~-- 303 (479)
|+++||+|+|++ ..+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 899999999973 13569999999999999999999999999999999999999999999999999988765
Q ss_pred -HHHhccceEEcCCCc--cc-cccHHhhcCCC----CCCCHHHHHHHHHHccHHHHHHhCCccccc-cccCCCCCCChhH
Q 011713 304 -KDLRTKLSIIPQEPT--LF-RGSVRTNLDPL----GMYSDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVGQ 374 (479)
Q Consensus 304 -~~lr~~i~~V~Q~~~--lF-~gTi~eNi~~~----~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T-~vge~G~~LSgGQ 374 (479)
..+|+.++|++|++. ++ ..|+++|+.+. ...+.+ .....+.+.+..+ |+++ ........|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA-----ERLARASEMLRAV--DLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH-----HHHHHHHHHHHHc--CCChhHhhCCCccCChHH
Confidence 357889999999983 43 46999998521 111111 1112233444443 5553 3455667899999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecCh
Q 011713 375 RQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLP 451 (479)
Q Consensus 375 rQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~ 451 (479)
|||++||||++.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCCh
Confidence 9999999999999999999999999999999999999988753 789999999999987 4999999999999999999
Q ss_pred hhhhccCchHHHH
Q 011713 452 SNLMKTNSAFSKL 464 (479)
Q Consensus 452 ~eLl~~~g~y~~l 464 (479)
+++...++.|...
T Consensus 237 ~~~~~~~~~~~~~ 249 (268)
T PRK10419 237 GDKLTFSSPAGRV 249 (268)
T ss_pred hhccCCCCHHHHH
Confidence 9998766655433
No 237
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.6e-46 Score=354.94 Aligned_cols=202 Identities=25% Similarity=0.367 Sum_probs=176.8
Q ss_pred EEEEeEEEEeCCC--CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHH---HHh
Q 011713 233 IELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLR 307 (479)
Q Consensus 233 I~~~~vsf~Y~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~---~lr 307 (479)
++++||++.|++. .+++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|++||.++.+.+.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999999643 14699999999999999999999999999999999999999999999999999877643 468
Q ss_pred ccceEEcCCCcccc-ccHHhhcCCCC----CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHH
Q 011713 308 TKLSIIPQEPTLFR-GSVRTNLDPLG----MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (479)
Q Consensus 308 ~~i~~V~Q~~~lF~-gTi~eNi~~~~----~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRl 378 (479)
+.++|+||++.+|. .|+.||+.+.. ..+ ++++.++++..++.+++.+.| ..||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 89999999999998 69999996421 122 234666777777766666655 57999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhcCCEEEEEeCCEE
Q 011713 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITDSDMVMVLSYGEL 445 (479)
Q Consensus 379 aiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~~D~I~vl~~G~I 445 (479)
+||||++++|++|||||||++||+++...+.+.|+++.+ ++|+|++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999988753 7999999999998888999999999986
No 238
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.4e-46 Score=366.48 Aligned_cols=213 Identities=28% Similarity=0.486 Sum_probs=188.7
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++||+.+|+. ...+|+||||+|++||.+|++||||||||||+++|+|++.|++|+|.++|.+...- ...+|++||
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 4789999999973 24599999999999999999999999999999999999999999999999998765 778999999
Q ss_pred EEcCCCccccc-cHHhhcCCCC---C----CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 011713 312 IIPQEPTLFRG-SVRTNLDPLG---M----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~~---~----~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA 383 (479)
||||+|.+++. |++|||.+.. . ..++++.+.++..++.+.- +.+ -..||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~----~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------NKK----VRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------Ccc----hhhcCHHHHHHHHHHHH
Confidence 99999998876 9999996421 1 2356788899998887622 222 35799999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC-C-cEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhcc
Q 011713 384 LLKRNRILILDEATASIDSATDAILQRIIREEFP-G-STVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 384 ll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~-~-~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
|+.+|++|||||||++|||.+...+.+.|+++.+ + +|+++.||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999999775 4 799999999999987 999999999999999999998654
No 239
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-46 Score=359.59 Aligned_cols=201 Identities=24% Similarity=0.307 Sum_probs=172.9
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999964 4599999999999999999999999999999999999999999999999998653 346899
Q ss_pred EcCCCcccc-ccHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 313 IPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 313 V~Q~~~lF~-gTi~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
++|++.+|. .|++||+.+.. ..+ ++++.++++..++.+...+ ....||||||||++||||+
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-----------YIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 999999987 59999996421 122 2346666777766554433 3468999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhc-CCEEEEEe--CCEEEEecCh
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLS--YGELVEYDLP 451 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-~D~I~vl~--~G~Ive~G~~ 451 (479)
+++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|+ +|+|++.++.
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999999998863 37999999999998754 99999998 5999998865
No 240
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-46 Score=352.59 Aligned_cols=211 Identities=27% Similarity=0.395 Sum_probs=185.0
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCe---ecCCCCHHHHhc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL---DICSMGLKDLRT 308 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~---~i~~~~~~~lr~ 308 (479)
.|+++|++..|+.. ++++|||++|+.||.+|+.||||||||||+++|+|+..|++|+|.+||. |.++. ..-.+
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~R 77 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRDR 77 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhhc
Confidence 47889999999643 4899999999999999999999999999999999999999999999999 55553 33456
Q ss_pred cceEEcCCCcccc-ccHHhhcCCCC-----C----CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHH
Q 011713 309 KLSIIPQEPTLFR-GSVRTNLDPLG-----M----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (479)
Q Consensus 309 ~i~~V~Q~~~lF~-gTi~eNi~~~~-----~----~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRl 378 (479)
+||+|+|+.-||. -||++||.|+- . ....++.+.++.++|..+-++.| .+||||||||+
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRV 146 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRV 146 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHH
Confidence 8999999999986 59999998753 1 23456777889999988888888 68999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhh
Q 011713 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 379 aiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
||||||...|++|+||||.+|||+...+.+.+-|++.. -+.|+++|||+...+ +.||||+||++|+|.+.|+++|..
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 99999999999999999999999999888888877654 278999999999864 669999999999999999999997
Q ss_pred cc
Q 011713 456 KT 457 (479)
Q Consensus 456 ~~ 457 (479)
..
T Consensus 227 ~~ 228 (345)
T COG1118 227 DH 228 (345)
T ss_pred cC
Confidence 64
No 241
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1e-45 Score=350.26 Aligned_cols=204 Identities=25% Similarity=0.374 Sum_probs=178.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
++++||+++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ++.++|
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 478999999964 45999999999999999999999999999999999999999999999999876422 357999
Q ss_pred EcCCCcccc-ccHHhhcCCC---CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 011713 313 IPQEPTLFR-GSVRTNLDPL---GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (479)
Q Consensus 313 V~Q~~~lF~-gTi~eNi~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p 388 (479)
+||++.+|. .|++||+.+. ...+++++.++++..++.++...- ...||||||||++||||++++|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKK-----------AKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 999999886 5999999642 123566788888888887655443 2579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhh
Q 011713 389 RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSN 453 (479)
Q Consensus 389 ~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~e 453 (479)
++|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+. .||+|++|++|++++.|+.++
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999998875 4789999999999885 599999999999999998765
No 242
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.8e-46 Score=337.19 Aligned_cols=171 Identities=44% Similarity=0.747 Sum_probs=162.2
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++|++++|++..+++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|.++.+++...+|+.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 47899999997543359999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEE
Q 011713 313 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILI 392 (479)
Q Consensus 313 V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~ili 392 (479)
++|++.+|+.|+.||+ ||||||||++||||++++|++||
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCE
Q 011713 393 LDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGE 444 (479)
Q Consensus 393 LDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~ 444 (479)
|||||++||+.+...+.+.|+++.+++|+|++||++..+..||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999998877899999999999998899999999985
No 243
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=3e-46 Score=354.59 Aligned_cols=212 Identities=25% Similarity=0.321 Sum_probs=169.5
Q ss_pred EEEEeEEEEeCCC--CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCceEEECCeecCCCCHHHHh
Q 011713 233 IELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE---PENGRILIDGLDICSMGLKDLR 307 (479)
Q Consensus 233 I~~~~vsf~Y~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~---p~~G~I~i~g~~i~~~~~~~lr 307 (479)
+.|+||+|+|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 6799999999765 3679999999999999999999999999999999999999 99999999999875 35688
Q ss_pred ccceEEcCCCccccc-cHHhhcCCCCC-CCHHHHHHHHHHccHHH-HHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 308 TKLSIIPQEPTLFRG-SVRTNLDPLGM-YSDNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 308 ~~i~~V~Q~~~lF~g-Ti~eNi~~~~~-~~~~~i~~a~~~a~l~~-~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
+.++|+||++.+|.+ |++||+.+... .......++......++ .+..+ |+..........|||||+||++||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 999999999999987 99999974210 00000000000001111 11111 222222334578999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCc--hhhhcCCEEEEEeCCEEEEec
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRV--PTITDSDMVMVLSYGELVEYD 449 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl--~~i~~~D~I~vl~~G~Ive~G 449 (479)
+++|++|||||||++||+.+...+.+.+++.. +++|+|++||++ ...+.||+|++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998864 478999999998 345679999999999999876
No 244
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-46 Score=337.06 Aligned_cols=170 Identities=32% Similarity=0.565 Sum_probs=158.0
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
++++||+++|++ .++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ..+|+.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 478999999964 35999999999999999999999999999999999999999999999999998765 677889999
Q ss_pred EcCCCccccc-cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEE
Q 011713 313 IPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 391 (479)
Q Consensus 313 V~Q~~~lF~g-Ti~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~il 391 (479)
++|++.+|.+ |++||+. ||||||||++||||++++|++|
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999987 9999973 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhh-cCCEEEEEeCCEE
Q 011713 392 ILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGEL 445 (479)
Q Consensus 392 iLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~~D~I~vl~~G~I 445 (479)
||||||++||+.+...+.+.|+++. ++.|+|++||+.+.+. .||+|++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999875 4689999999999887 5999999999974
No 245
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-45 Score=337.88 Aligned_cols=172 Identities=33% Similarity=0.523 Sum_probs=159.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCC--HHHHhccc
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG--LKDLRTKL 310 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~--~~~lr~~i 310 (479)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++ ...+++.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 578999999964 45999999999999999999999999999999999999999999999999998876 56788999
Q ss_pred eEEcCCCccccc-cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCC
Q 011713 311 SIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389 (479)
Q Consensus 311 ~~V~Q~~~lF~g-Ti~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~ 389 (479)
+|++|++.+|.+ |++||+.+. ||||||||++||||++++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 999999998865 999999642 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCE
Q 011713 390 ILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGE 444 (479)
Q Consensus 390 iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~ 444 (479)
++||||||++||+.+...+.+.|++..+ ++|+|++||++..+. .||+|++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999988764 589999999999998 599999999985
No 246
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=9.1e-46 Score=372.88 Aligned_cols=207 Identities=25% Similarity=0.366 Sum_probs=177.9
Q ss_pred eEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCC----HHHHhccceE
Q 011713 237 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKDLRTKLSI 312 (479)
Q Consensus 237 ~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~----~~~lr~~i~~ 312 (479)
|++++|++ . .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|+.++|
T Consensus 4 ~l~~~~~~--~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGD--F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECC--E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 89999964 2 35 999999999999999999999999999999999999999999999987542 3457889999
Q ss_pred EcCCCccccc-cHHhhcCCCC-CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc
Q 011713 313 IPQEPTLFRG-SVRTNLDPLG-MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (479)
Q Consensus 313 V~Q~~~lF~g-Ti~eNi~~~~-~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~ 386 (479)
|+|++.+|.. |++||+.++. ... ++++.++++..++.++..+.| ..||||||||++|||||+.
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLP-----------GRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHHHHHc
Confidence 9999999975 9999997531 111 234666777776665554443 6899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhccC
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 9999999999999999999999999988753 7899999999998865 9999999999999999999998643
No 247
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-45 Score=344.23 Aligned_cols=189 Identities=24% Similarity=0.301 Sum_probs=162.2
Q ss_pred EEEEeEEEEeCCC--CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCceEEECCeecCCCCHHHHh
Q 011713 233 IELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE---PENGRILIDGLDICSMGLKDLR 307 (479)
Q Consensus 233 I~~~~vsf~Y~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~---p~~G~I~i~g~~i~~~~~~~lr 307 (479)
+.++||+|.|+.. .+++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++...+ ...|
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~ 82 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYP 82 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhc
Confidence 7899999999753 4579999999999999999999999999999999999999 89999999999998765 4678
Q ss_pred ccceEEcCCCccccc-cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc
Q 011713 308 TKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (479)
Q Consensus 308 ~~i~~V~Q~~~lF~g-Ti~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~ 386 (479)
+.++|++|++.+|.+ |++||+.+.... . .+ +....||||||||++||||+++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------~--------------~~----~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRC---------K--------------GN----EFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhh---------c--------------cc----cchhhCCHHHHHHHHHHHHHhh
Confidence 899999999988875 999999642110 0 12 2335799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccC-chhh-hcCCEEEEEeCCEEEEec
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHR-VPTI-TDSDMVMVLSYGELVEYD 449 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHr-l~~i-~~~D~I~vl~~G~Ive~G 449 (479)
+|++|||||||++||+++.+.+.+.|+++.+ +.|+|+++|+ +..+ +.||+|++|++|++++.|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999998754 4676766554 5555 569999999999998765
No 248
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.9e-45 Score=352.39 Aligned_cols=208 Identities=25% Similarity=0.380 Sum_probs=181.5
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
-|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 3899999999964 3599999999999999999999999999999999999999999999987 34799
Q ss_pred EEcCCCcccc---ccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 011713 312 IIPQEPTLFR---GSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (479)
Q Consensus 312 ~V~Q~~~lF~---gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p 388 (479)
|+||++.++. .|+++|+......+++++.++++..++.+++... ...||||||||++||||++++|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAP-----------MQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCC-----------hhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998865 3889998644345577889999999988776543 3579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhccCchHHHHH
Q 011713 389 RILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLV 465 (479)
Q Consensus 389 ~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~ 465 (479)
++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++ +|++.|+++++.. ++.|.+++
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~-~~~~~~~~ 217 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL-HPEFISMF 217 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC-CHHHHHHh
Confidence 99999999999999999999999988653 789999999999985 5999999965 7999999999864 45566665
No 249
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-45 Score=357.22 Aligned_cols=209 Identities=22% Similarity=0.324 Sum_probs=176.1
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. ...++.++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 49999999999643 459999999999999999999999999999999999999999999999998752 11234699
Q ss_pred EEcCCCcc---ccccHHhhcCCCC-----------CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHH
Q 011713 312 IIPQEPTL---FRGSVRTNLDPLG-----------MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 312 ~V~Q~~~l---F~gTi~eNi~~~~-----------~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
|+||++.+ +..++++|+.+.. ...++++.++++..++.++.. +.+ ..||||||||
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~~~----~~LSgG~~qr 150 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-------RQI----GELSGGQKKR 150 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-------CCc----ccCCHHHHHH
Confidence 99999865 4568899985310 012345667778888766543 333 4699999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhh
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
++||||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+ +.||+++++ +|++++.|+++++.
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 999999999999999999999999999999999998875 478999999999887 559999777 89999999999986
Q ss_pred c
Q 011713 456 K 456 (479)
Q Consensus 456 ~ 456 (479)
.
T Consensus 230 ~ 230 (272)
T PRK15056 230 T 230 (272)
T ss_pred C
Confidence 4
No 250
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=3.9e-45 Score=340.21 Aligned_cols=185 Identities=28% Similarity=0.392 Sum_probs=163.7
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhcc--CCCCCceEEECCeecCCCCHHHH-hcc
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDL-RTK 309 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~--~~p~~G~I~i~g~~i~~~~~~~l-r~~ 309 (479)
++++||+++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |..
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999963 4599999999999999999999999999999999999 58999999999999998887654 556
Q ss_pred ceEEcCCCccccc-cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 011713 310 LSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (479)
Q Consensus 310 i~~V~Q~~~lF~g-Ti~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p 388 (479)
++|+||++.+|++ |+++|+ ... ...||||||||++||||++++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l------------------------~~~-----------~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL------------------------RYV-----------NEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHH------------------------hhc-----------cccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999886 455544 011 1479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEccCchhhh--cCCEEEEEeCCEEEEecChhhhh
Q 011713 389 RILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTIT--DSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 389 ~iliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaHrl~~i~--~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
+++||||||++||+.+...+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.| +.|+.
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 99999999999999999999999988753 789999999999998 69999999999999999 45554
No 251
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=6.2e-45 Score=351.55 Aligned_cols=217 Identities=23% Similarity=0.393 Sum_probs=178.2
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCee-----cCCCCHHHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD-----ICSMGLKDL 306 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~-----i~~~~~~~l 306 (479)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +..++....
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 3899999999964 348999999999999999999999999999999999999999999999988 777665543
Q ss_pred ----hccceEEcCCCc--c-ccccHHhhcCC----CCCCCHHHHHHHHHHccHHHHHHhCCcccc-ccccCCCCCCChhH
Q 011713 307 ----RTKLSIIPQEPT--L-FRGSVRTNLDP----LGMYSDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQ 374 (479)
Q Consensus 307 ----r~~i~~V~Q~~~--l-F~gTi~eNi~~----~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~-T~vge~G~~LSgGQ 374 (479)
++.++|++|++. + +..|+.+|+.. .......+. ...+.++++.+. ++ +........|||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l~--l~~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEVE--IDPTRIDDLPRAFSGGM 153 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHcC--CChhhhhcCchhcCHHH
Confidence 467999999985 2 33588888742 111111111 123345555552 32 34556678899999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecCh
Q 011713 375 RQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLP 451 (479)
Q Consensus 375 rQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~ 451 (479)
|||++||||++++|++|||||||++||+.+.+.+.+.|++.. .+.|+|++||++..+. .||++++|++|++++.|++
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~ 233 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLT 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998864 3789999999999987 4999999999999999999
Q ss_pred hhhhcc
Q 011713 452 SNLMKT 457 (479)
Q Consensus 452 ~eLl~~ 457 (479)
+++...
T Consensus 234 ~~~~~~ 239 (253)
T TIGR02323 234 DQVLDD 239 (253)
T ss_pred HHHhcC
Confidence 998763
No 252
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-45 Score=340.12 Aligned_cols=181 Identities=25% Similarity=0.367 Sum_probs=161.0
Q ss_pred cEEEEeEEEEeCCC--CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCceEEECCeecCCCCHHHHh
Q 011713 232 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPENGRILIDGLDICSMGLKDLR 307 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~--~p~~G~I~i~g~~i~~~~~~~lr 307 (479)
.|+++|++|+|++. .+++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 48999999999742 246999999999999999999999999999999999986 489999999999885 5678
Q ss_pred ccceEEcCCCccccc-cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc
Q 011713 308 TKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (479)
Q Consensus 308 ~~i~~V~Q~~~lF~g-Ti~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~ 386 (479)
++++|++|++.+|.+ |++||+.+.. .++ .||||||||++||||+++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~---------~~~------------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA---------LLR------------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH---------HHh------------------------cCCHHHhHHHHHHHHHhc
Confidence 899999999998875 9999996310 000 899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchh--hhcCCEEEEEeC-CEEEEec
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPT--ITDSDMVMVLSY-GELVEYD 449 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~--i~~~D~I~vl~~-G~Ive~G 449 (479)
+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++. ...||+|++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999998865 47999999999983 567999999999 9999865
No 253
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.5e-45 Score=339.70 Aligned_cols=182 Identities=25% Similarity=0.418 Sum_probs=161.8
Q ss_pred cEEEEeEEEEeCCC----CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCceEEECCeecCCCCHHH
Q 011713 232 RIELEDLKVRYRPN----TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPENGRILIDGLDICSMGLKD 305 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~--~p~~G~I~i~g~~i~~~~~~~ 305 (479)
.|+++||+|+|+.. .+++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.+||.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999752 246999999999999999999999999999999999999 9999999999998875 36
Q ss_pred HhccceEEcCCCccccc-cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 306 LRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 306 lr~~i~~V~Q~~~lF~g-Ti~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
+|+.++|++|++.+|.+ |++||+.+.. . +. .||||||||++||||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~-----~----~~------------------------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA-----K----LR------------------------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH-----H----hc------------------------cCCHHHHHHHHHHHHH
Confidence 78899999999999875 9999985311 0 00 7999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCch-hh-hcCCEEEEEeCCEEEEec
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVP-TI-TDSDMVMVLSYGELVEYD 449 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~-~i-~~~D~I~vl~~G~Ive~G 449 (479)
+++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++ .+ +.||++++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998875 4899999999996 44 469999999999998764
No 254
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.8e-45 Score=335.49 Aligned_cols=177 Identities=34% Similarity=0.536 Sum_probs=161.5
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEE
Q 011713 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (479)
Q Consensus 234 ~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V 313 (479)
+++||+|+|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+++...+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999964 4599999999999999999999999999999999999999999999999999998888899999999
Q ss_pred cCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEE
Q 011713 314 PQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILIL 393 (479)
Q Consensus 314 ~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliL 393 (479)
+| +++..++.+++.+ ....||||||||++||||++++|+++||
T Consensus 79 ~q--------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 6777777766543 2468999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhh-hcCCEEEEEeCCEEEEec
Q 011713 394 DEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTI-TDSDMVMVLSYGELVEYD 449 (479)
Q Consensus 394 DE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G 449 (479)
||||++||+++...+.+.|+++.+ ++|+|++||+++.+ +.||++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999988754 78999999999997 569999999999998754
No 255
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-45 Score=344.60 Aligned_cols=199 Identities=24% Similarity=0.320 Sum_probs=167.5
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCC----CHHHHhcc
Q 011713 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLKDLRTK 309 (479)
Q Consensus 234 ~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~----~~~~lr~~ 309 (479)
.+ ||+++|++. .+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.+. +...+|+.
T Consensus 3 ~~-~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 3 CV-DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred ee-eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 44 899999752 24 99999999 99999999999999999999999999999999999998643 23457889
Q ss_pred ceEEcCCCcccc-ccHHhhcCCCC-CC----CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 011713 310 LSIIPQEPTLFR-GSVRTNLDPLG-MY----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (479)
Q Consensus 310 i~~V~Q~~~lF~-gTi~eNi~~~~-~~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA 383 (479)
++|+||++.+|. .|++||+.+.. .. .++++.++++..++.+. +......||||||||++||||
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~a 145 (214)
T cd03297 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHL-----------LNRYPAQLSGGEKQRVALARA 145 (214)
T ss_pred EEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhH-----------hhcCcccCCHHHHHHHHHHHH
Confidence 999999999986 49999997431 11 12345555555555433 334457899999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEec
Q 011713 384 LLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYD 449 (479)
Q Consensus 384 ll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G 449 (479)
++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 146 LAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999988743 789999999999885 59999999999999876
No 256
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=5.2e-45 Score=329.06 Aligned_cols=164 Identities=32% Similarity=0.448 Sum_probs=151.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++||+++|++. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 5789999999643 45999999999999999999999999999999999999999999999883 68999
Q ss_pred EcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEE
Q 011713 313 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILI 392 (479)
Q Consensus 313 V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~ili 392 (479)
++|++.+|++|++||+.+. ....||||||||++||||++++|+++|
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999742 246899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCE
Q 011713 393 LDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGE 444 (479)
Q Consensus 393 LDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~ 444 (479)
|||||++||+++.+.+.+.+++. ++|+|++||+++....||+|++|++|-
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99999999999999999999886 589999999999888999999998864
No 257
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=7.9e-45 Score=350.67 Aligned_cols=212 Identities=21% Similarity=0.277 Sum_probs=176.8
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhcc--CCCCCceEEECCeecCCCCHHHHhc-
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDLRT- 308 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~--~~p~~G~I~i~g~~i~~~~~~~lr~- 308 (479)
-|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++.+++....++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4899999999964 3599999999999999999999999999999999998 6899999999999999888766655
Q ss_pred cceEEcCCCccccc-cHHhhcCCCC----------CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChh
Q 011713 309 KLSIIPQEPTLFRG-SVRTNLDPLG----------MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 373 (479)
Q Consensus 309 ~i~~V~Q~~~lF~g-Ti~eNi~~~~----------~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgG 373 (479)
.+++++|++.+|.+ |+++|+.+.. +.+ .+++.++++.+++.+. ..+..++ ..||||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~---~~LSgG 155 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPS------FLSRNVN---EGFSGG 155 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchh------hhccccc---cCCCHH
Confidence 48999999999986 7899975321 001 1234455555555311 1222222 259999
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc--CCEEEEEeCCEEEEecC
Q 011713 374 QRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD--SDMVMVLSYGELVEYDL 450 (479)
Q Consensus 374 QrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~--~D~I~vl~~G~Ive~G~ 450 (479)
||||++||||++++|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 156 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~ 235 (252)
T CHL00131 156 EKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999998875 47999999999998875 89999999999999999
Q ss_pred hhhh
Q 011713 451 PSNL 454 (479)
Q Consensus 451 ~~eL 454 (479)
++++
T Consensus 236 ~~~~ 239 (252)
T CHL00131 236 AELA 239 (252)
T ss_pred hhhh
Confidence 9843
No 258
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=2.8e-45 Score=343.13 Aligned_cols=193 Identities=25% Similarity=0.374 Sum_probs=165.5
Q ss_pred EEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCH----HHHhccc
Q 011713 235 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL----KDLRTKL 310 (479)
Q Consensus 235 ~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~----~~lr~~i 310 (479)
++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...|+.+
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4789999964 359999999999999999999999999999999999999999999999999765542 2467889
Q ss_pred eEEcCCCcccc-ccHHhhcCCCC---CC----CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 011713 311 SIIPQEPTLFR-GSVRTNLDPLG---MY----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (479)
Q Consensus 311 ~~V~Q~~~lF~-gTi~eNi~~~~---~~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiAR 382 (479)
+|++|++.+|. .|++||+.+.. .. .++++.++++..++.++..+. ..+||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQK-----------IYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCC-----------hhhCCHHHHHHHHHHH
Confidence 99999999997 69999996421 11 234566777777775544332 3579999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcCCEEEEE
Q 011713 383 VLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVL 440 (479)
Q Consensus 383 All~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl 440 (479)
||+++|++|||||||++||+.+...+.+.|+++. +++|+|++||++..+..||+|++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999998875 379999999999988889999885
No 259
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-44 Score=329.04 Aligned_cols=220 Identities=26% Similarity=0.439 Sum_probs=188.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHH-hccce
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKLS 311 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~l-r~~i~ 311 (479)
++++||+..|.+ ..+|+||||++++||+++++|+||+||||+++.|+|+.+|.+|+|.++|.|+...+++.. |.-|+
T Consensus 4 L~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 4 LEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred eeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 789999999975 349999999999999999999999999999999999999999999999999999988765 77899
Q ss_pred EEcCCCccccc-cHHhhcCCCCCC-CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCC
Q 011713 312 IIPQEPTLFRG-SVRTNLDPLGMY-SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~~~~-~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~ 389 (479)
||||.-.+|.. ||+|||.++... .+++- ....+++..+-+| -+......++..|||||+|-+||||||..+|+
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~~~----~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk 156 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDKEA----QERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSRPK 156 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhccccccc----ccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence 99999999987 999999764311 11111 1111333344455 35556677889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhhccCc
Q 011713 390 ILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLMKTNS 459 (479)
Q Consensus 390 iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~~g 459 (479)
+|+|||||.+|-|.--+.|.+.|+++.+ +-|+++|-++.... +-|||-|||++|+|+.+|+.+||.+...
T Consensus 157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHH
Confidence 9999999999999999999999998874 56999999999865 5699999999999999999999987654
No 260
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.9e-45 Score=335.20 Aligned_cols=172 Identities=29% Similarity=0.497 Sum_probs=156.6
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCH-HHHhccc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKL 310 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~-~~lr~~i 310 (479)
-|+++|++++| +|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++. ..+|+.+
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 38999999998 8999999999999999999999999999999999999999999999999998874 4578899
Q ss_pred eEEcCCC----ccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc
Q 011713 311 SIIPQEP----TLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (479)
Q Consensus 311 ~~V~Q~~----~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~ 386 (479)
+|++|++ .++..|++||+.+... ||||||||++||||+++
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999995 3445799999964210 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEE
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGEL 445 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~I 445 (479)
+|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999998874 47999999999998876 999999999975
No 261
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1e-44 Score=369.80 Aligned_cols=224 Identities=27% Similarity=0.458 Sum_probs=189.6
Q ss_pred cEEEEeEEEEeCCC---------CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCee--cCC
Q 011713 232 RIELEDLKVRYRPN---------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD--ICS 300 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~---------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~--i~~ 300 (479)
-++++|++.+|... ...+++||||++++||++||||+||||||||+++|+|+.+|++|+|.++|.| ++.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 47899999999731 2358999999999999999999999999999999999999999999999977 333
Q ss_pred CCHHHHhccceEEcCCCccc---cccHHhhcC-C---CCCC----CHHHHHHHHHHccHHH-HHHhCCccccccccCCCC
Q 011713 301 MGLKDLRTKLSIIPQEPTLF---RGSVRTNLD-P---LGMY----SDNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEGE 368 (479)
Q Consensus 301 ~~~~~lr~~i~~V~Q~~~lF---~gTi~eNi~-~---~~~~----~~~~i~~a~~~a~l~~-~i~~lp~G~~T~vge~G~ 368 (479)
-....+|+++-+|+|||+-. ..||+++|. + .... ..+++.+.++.+++.+ +..+.| .
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP-----------~ 428 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP-----------H 428 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc-----------h
Confidence 33556788999999999842 459999985 1 1111 2345777788888875 566666 5
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCCEE
Q 011713 369 NWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGEL 445 (479)
Q Consensus 369 ~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G~I 445 (479)
.||||||||+||||||..+|+++|+|||||+||+-+...|.+.|.++.+ +.|.|+|||+++.++. ||||+||++|+|
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~i 508 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRI 508 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeE
Confidence 7999999999999999999999999999999999999999999987654 6999999999999987 999999999999
Q ss_pred EEecChhhhhcc-CchHHHHHH
Q 011713 446 VEYDLPSNLMKT-NSAFSKLVA 466 (479)
Q Consensus 446 ve~G~~~eLl~~-~g~y~~l~~ 466 (479)
||.|+.+++.+. ...|.+..-
T Consensus 509 VE~G~~~~v~~~p~h~Ytr~L~ 530 (539)
T COG1123 509 VEEGPTEKVFENPQHPYTRKLL 530 (539)
T ss_pred EEeCCHHHHhcCCCChHHHHHH
Confidence 999999999874 556765543
No 262
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.2e-44 Score=346.82 Aligned_cols=211 Identities=20% Similarity=0.255 Sum_probs=170.1
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhcc--CCCCCceEEECCeecCCCCHHHHh-cc
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDLR-TK 309 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~--~~p~~G~I~i~g~~i~~~~~~~lr-~~ 309 (479)
|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.+||.++.+++....+ ..
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 789999999974 3599999999999999999999999999999999999 479999999999999888876655 57
Q ss_pred ceEEcCCCccccc-cHHhhcC-------CCCC---CCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhH
Q 011713 310 LSIIPQEPTLFRG-SVRTNLD-------PLGM---YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 374 (479)
Q Consensus 310 i~~V~Q~~~lF~g-Ti~eNi~-------~~~~---~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQ 374 (479)
++|++|++.++.. |..+|+. .... ... +.+.++++.. .+|+++.+... ...|||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~--~~~LS~G~ 150 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALL-------KMPEDLLTRSV--NVGFSGGE 150 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHc-------CCChhhcccCC--CCCCCHHH
Confidence 9999999987764 4434331 1100 011 1111222222 24444443322 13699999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEccCchhhhc--CCEEEEEeCCEEEEecCh
Q 011713 375 RQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITD--SDMVMVLSYGELVEYDLP 451 (479)
Q Consensus 375 rQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaHrl~~i~~--~D~I~vl~~G~Ive~G~~ 451 (479)
|||++||||++++|+||||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 151 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~ 230 (248)
T PRK09580 151 KKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230 (248)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999999988654 6899999999999887 899999999999999998
Q ss_pred hhh
Q 011713 452 SNL 454 (479)
Q Consensus 452 ~eL 454 (479)
++.
T Consensus 231 ~~~ 233 (248)
T PRK09580 231 TLV 233 (248)
T ss_pred HHH
Confidence 854
No 263
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2.7e-44 Score=345.64 Aligned_cols=205 Identities=24% Similarity=0.345 Sum_probs=174.5
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEE
Q 011713 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (479)
Q Consensus 234 ~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V 313 (479)
+++||++. .+|+|+||+|++||+++|+|+||||||||+++|+|++++ +|+|.+||.++.+.+...+++.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEe
Confidence 56778774 179999999999999999999999999999999999964 99999999999988888888899999
Q ss_pred cCCCc-cccccHHhhcCCCCC--CC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc
Q 011713 314 PQEPT-LFRGSVRTNLDPLGM--YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (479)
Q Consensus 314 ~Q~~~-lF~gTi~eNi~~~~~--~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~ 386 (479)
||++. .+..|+++|+.+... .+ .+++.++++..++.+.. ......||||||||++||||++.
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKL-----------GRSVNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHHHHhc
Confidence 99985 456799999975321 11 23455566666554433 23346899999999999999997
Q ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhhc
Q 011713 387 -------RNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 387 -------~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|+++++..
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999998875 478999999999966 5699999999999999999999865
No 264
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.3e-45 Score=311.51 Aligned_cols=196 Identities=26% Similarity=0.408 Sum_probs=172.5
Q ss_pred eCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCcccc
Q 011713 242 YRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR 321 (479)
Q Consensus 242 Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~ 321 (479)
|.....++|+|+||++.+||.+||.||||||||||+|.++-+.+|++|.+++.|.|++.++++.+|++|+|+.|.|.||.
T Consensus 11 y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred hhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 43345569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHhhcCCC-----CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCC
Q 011713 322 GSVRTNLDPL-----GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEA 396 (479)
Q Consensus 322 gTi~eNi~~~-----~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~ 396 (479)
+||.||+-+- ...+.....+.++.+++.+.+ +..+-.+||||||||+||+|-|---|+||+|||+
T Consensus 91 ~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~----------L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 91 DTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSI----------LTKNITELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred cchhhccccchHHhccCCChHHHHHHHHHcCCchhh----------hcchhhhccchHHHHHHHHHHhhcCCceEEecCc
Confidence 9999999641 124555555566666655443 4455688999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchh-hhcCCEEEEEeCCEEEE
Q 011713 397 TASIDSATDAILQRIIREEF--PGSTVITIAHRVPT-ITDSDMVMVLSYGELVE 447 (479)
Q Consensus 397 TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~-i~~~D~I~vl~~G~Ive 447 (479)
|||||+.+.+.|.+.|.++. ++..++.|||.... +++||+++-+..|++-+
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 99999999999999998876 47899999999987 89999999999998743
No 265
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=3.4e-44 Score=341.20 Aligned_cols=190 Identities=25% Similarity=0.375 Sum_probs=162.1
Q ss_pred eeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCcccc-ccHHhhc
Q 011713 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVRTNL 328 (479)
Q Consensus 250 L~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~-gTi~eNi 328 (479)
|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+. ..+||+|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876543 2489999999988 5999999
Q ss_pred CCC-----CCCCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCC
Q 011713 329 DPL-----GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATAS 399 (479)
Q Consensus 329 ~~~-----~~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSa 399 (479)
.+. ...++ +++.++++..++.++..+ ....||||||||++||||++++|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK-----------RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcC-----------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 642 12222 235566666666544333 2357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhh
Q 011713 400 IDSATDAILQRIIREEF--PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 400 LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|+..+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998864 3789999999999875 49999999999999999876664
No 266
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.4e-45 Score=321.54 Aligned_cols=213 Identities=29% Similarity=0.429 Sum_probs=185.8
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
+++.+++.+|++- ..+++||||+++.||.++|.|||||||||++++|..++.|++|+|++||.|..+. +...|++||+
T Consensus 2 l~v~~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcce
Confidence 6789999999763 3389999999999999999999999999999999999999999999999999775 5678999999
Q ss_pred EcCCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 313 IPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 313 V~Q~~~lF~g-Ti~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
++-+.-|+.. |.||||.++. +.+ +.++.+..+..++.+.+ |+++| +||-|+|||++|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~-------~rRv~----~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYL-------DRRVG----EFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHH-------HHHHh----hhchhhHHHHHHHHHH
Confidence 9988888876 9999997542 222 34455555555665554 44454 5999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhccC
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
.+||+++|||||||+||..+.+++++-+.+... ++++|+.||-++.++ -||+++++++|+++..|+.+++.++.
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 999999999999999999999999999998775 999999999999998 69999999999999999999998643
No 267
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-44 Score=340.66 Aligned_cols=223 Identities=27% Similarity=0.467 Sum_probs=184.9
Q ss_pred EEEEeEEEEeCCCC--CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC-C----CCceEEECCeecCCCCHHH
Q 011713 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-P----ENGRILIDGLDICSMGLKD 305 (479)
Q Consensus 233 I~~~~vsf~Y~~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~-p----~~G~I~i~g~~i~~~~~~~ 305 (479)
++++|++..|.... ..+++||||++++||++||||+|||||||+.+.|+|+.+ | .+|+|.++|.|+-.++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999996432 358999999999999999999999999999999999998 4 6799999999999999886
Q ss_pred Hh----ccceEEcCCCcc-ccc--cHHhhc----CCCCCC-C----HHHHHHHHHHccHHH---HHHhCCccccccccCC
Q 011713 306 LR----TKLSIIPQEPTL-FRG--SVRTNL----DPLGMY-S----DNEIWEAMEKCQLKA---TISRLPMLLDSSVSDE 366 (479)
Q Consensus 306 lr----~~i~~V~Q~~~l-F~g--Ti~eNi----~~~~~~-~----~~~i~~a~~~a~l~~---~i~~lp~G~~T~vge~ 366 (479)
+| +.|++|+|||.- |+= ||.+-+ ...... + .++..++++.+++.+ .+...|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------- 151 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------- 151 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC----------
Confidence 53 379999999863 332 444443 211111 1 346788888888864 455666
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhc-CCEEEEEeCC
Q 011713 367 GENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYG 443 (479)
Q Consensus 367 G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-~D~I~vl~~G 443 (479)
..||||||||+.||-|++.+|++||-||||+|||..+.++|.+.|+++. .+.|+|+|||++..+.. ||||+||..|
T Consensus 152 -helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG 230 (316)
T COG0444 152 -HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG 230 (316)
T ss_pred -cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECc
Confidence 6899999999999999999999999999999999999999999998876 48999999999998755 9999999999
Q ss_pred EEEEecChhhhhcc--CchHHHHHH
Q 011713 444 ELVEYDLPSNLMKT--NSAFSKLVA 466 (479)
Q Consensus 444 ~Ive~G~~~eLl~~--~g~y~~l~~ 466 (479)
+|||.|+.++++++ +.+-+.|++
T Consensus 231 ~iVE~g~~~~i~~~P~HPYT~~Ll~ 255 (316)
T COG0444 231 RIVEEGPVEEIFKNPKHPYTRGLLN 255 (316)
T ss_pred EEEEeCCHHHHhcCCCChHHHHHHH
Confidence 99999999999973 344444544
No 268
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-44 Score=385.58 Aligned_cols=224 Identities=25% Similarity=0.425 Sum_probs=186.8
Q ss_pred cEEEEeEEEEeCCC---------CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCC
Q 011713 232 RIELEDLKVRYRPN---------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG 302 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~---------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~ 302 (479)
-|+++||++.|+.. ...+|+||||+|++||++||+|+||||||||+++|+|+.+|++|+|.++|.++..++
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 48999999999621 135999999999999999999999999999999999999999999999999998776
Q ss_pred HH---HHhccceEEcCCCc--ccc-ccHHhhcCCC----CCCC----HHHHHHHHHHccHH-HHHHhCCccccccccCCC
Q 011713 303 LK---DLRTKLSIIPQEPT--LFR-GSVRTNLDPL----GMYS----DNEIWEAMEKCQLK-ATISRLPMLLDSSVSDEG 367 (479)
Q Consensus 303 ~~---~lr~~i~~V~Q~~~--lF~-gTi~eNi~~~----~~~~----~~~i~~a~~~a~l~-~~i~~lp~G~~T~vge~G 367 (479)
.. .+|++|+||+|++. +|. -|+.+|+... ...+ .+++.++++.+++. +...+.|
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~----------- 461 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP----------- 461 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----------
Confidence 43 46788999999984 665 4999998531 1111 24566677777773 3444433
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCCE
Q 011713 368 ENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGE 444 (479)
Q Consensus 368 ~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G~ 444 (479)
..||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||||++|++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 57999999999999999999999999999999999999999999988643 7899999999998865 99999999999
Q ss_pred EEEecChhhhhcc-CchHH-HHHH
Q 011713 445 LVEYDLPSNLMKT-NSAFS-KLVA 466 (479)
Q Consensus 445 Ive~G~~~eLl~~-~g~y~-~l~~ 466 (479)
|++.|+.+++... ...|. .++.
T Consensus 542 iv~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 542 IVEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred EEEecCHHHHhcCCCCHHHHHHHh
Confidence 9999999999863 33454 3443
No 269
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4.5e-44 Score=378.33 Aligned_cols=212 Identities=29% Similarity=0.413 Sum_probs=182.7
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHh-ccc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR-TKL 310 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr-~~i 310 (479)
-|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 4999999999964 4599999999999999999999999999999999999999999999999999888776665 469
Q ss_pred eEEcCCCccccc-cHHhhcCCCCC---CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc
Q 011713 311 SIIPQEPTLFRG-SVRTNLDPLGM---YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (479)
Q Consensus 311 ~~V~Q~~~lF~g-Ti~eNi~~~~~---~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~ 386 (479)
+||+|++.+|.. |++||+.+... ..++++.++++..++.++ ++.. ...||||||||++|||||++
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~----~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-------LDSS----AGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-------ccCC----hhhCCHHHHHHHHHHHHHHc
Confidence 999999998876 99999975321 123455666666655332 2223 35799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhc
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
+|++|||||||++||+.+...+.+.|+++. +++|+|++||++..+.. ||+|++|++|+|++.|+++++..
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999998864 47899999999998754 99999999999999999998764
No 270
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=7.2e-44 Score=320.62 Aligned_cols=159 Identities=33% Similarity=0.544 Sum_probs=148.0
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHH-HHhccce
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKLS 311 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~-~lr~~i~ 311 (479)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. ..|++++
T Consensus 1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 579999999964 3599999999999999999999999999999999999999999999999999988764 4678899
Q ss_pred EEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEE
Q 011713 312 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 391 (479)
Q Consensus 312 ~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~il 391 (479)
|++| ||||||||++||||++++|++|
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhh-cCCEEEEEeCCEEEE
Q 011713 392 ILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGELVE 447 (479)
Q Consensus 392 iLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive 447 (479)
||||||++||+++.+.+.+.|+++. +++|+|++||++..+. .||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999998874 4789999999999775 499999999999975
No 271
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=7.6e-44 Score=331.86 Aligned_cols=194 Identities=27% Similarity=0.345 Sum_probs=168.7
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
++++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.... ..+|++++|
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 478999999964 35999999999999999999999999999999999999999999999999987643 567889999
Q ss_pred EcCCCccc-cccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCE
Q 011713 313 IPQEPTLF-RGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 390 (479)
Q Consensus 313 V~Q~~~lF-~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~i 390 (479)
++|++.++ ..|++||+.+.. ..+++++.++++..++.++..+ . ...||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDR-------P----VAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcC-------c----hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999886 579999997542 3466788888899988755432 2 257999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchh-hhcCCEEEEE
Q 011713 391 LILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPT-ITDSDMVMVL 440 (479)
Q Consensus 391 liLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~-i~~~D~I~vl 440 (479)
+||||||++||+.+.+.+.+.|++.. +++|+|++||+... ...||+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998764 47999999998664 5568998876
No 272
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-44 Score=337.79 Aligned_cols=216 Identities=27% Similarity=0.408 Sum_probs=190.0
Q ss_pred cEEEEeEEEEeCCCC----------------------CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCc
Q 011713 232 RIELEDLKVRYRPNT----------------------PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 289 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~----------------------~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G 289 (479)
.|+++||+.-++.+. ..-++|+||+|+.||+..|.|=||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 488888887775321 1248999999999999999999999999999999999999999
Q ss_pred eEEECCeecCCCCHHHHh----ccceEEcCCCccccc-cHHhhcCCCCC---C----CHHHHHHHHHHccHHHHHHhCCc
Q 011713 290 RILIDGLDICSMGLKDLR----TKLSIIPQEPTLFRG-SVRTNLDPLGM---Y----SDNEIWEAMEKCQLKATISRLPM 357 (479)
Q Consensus 290 ~I~i~g~~i~~~~~~~lr----~~i~~V~Q~~~lF~g-Ti~eNi~~~~~---~----~~~~i~~a~~~a~l~~~i~~lp~ 357 (479)
+|+++|.|+..++.++|| +++++|+|..-||+- ||.||..|+-+ . .++...++++.+||+.|-.+.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 999999999999988874 579999999999875 99999987532 2 3456788999999999999998
Q ss_pred cccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchh-hhcC
Q 011713 358 LLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPT-ITDS 434 (479)
Q Consensus 358 G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~-i~~~ 434 (479)
..||||++||+.|||||..+|+||++|||.|||||--...+|+-|.++- -+||+++|||+|.. ++-.
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 5799999999999999999999999999999999998888888776543 37999999999986 6779
Q ss_pred CEEEEEeCCEEEEecChhhhhccC
Q 011713 435 DMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 435 D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
|||..|++|+|++.||++|++.+.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCc
Confidence 999999999999999999999743
No 273
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-44 Score=378.12 Aligned_cols=211 Identities=26% Similarity=0.391 Sum_probs=178.0
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCceEEECCeecCCCCHHH-Hhc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDICSMGLKD-LRT 308 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p--~~G~I~i~g~~i~~~~~~~-lr~ 308 (479)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+... +|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 3899999999963 3599999999999999999999999999999999999996 8999999999998877654 467
Q ss_pred cceEEcCCCccccc-cHHhhcCCCCC------CCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHH
Q 011713 309 KLSIIPQEPTLFRG-SVRTNLDPLGM------YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 309 ~i~~V~Q~~~lF~g-Ti~eNi~~~~~------~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
.++||||++.+|.. |++||+.+... .+. +++.++++..++ +.........||||||||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqr 151 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKL-----------DINPATPVGNLGLGQQQL 151 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCC-----------CCCcccchhhCCHHHHHH
Confidence 89999999998875 99999975321 122 233344444433 222233346799999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhh
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl 455 (479)
++|||||+.+|++||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+.+++.
T Consensus 152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 999999999999999999999999999999999998864 47899999999998865 9999999999999999988874
No 274
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=4.1e-44 Score=340.76 Aligned_cols=205 Identities=24% Similarity=0.356 Sum_probs=168.7
Q ss_pred eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC----CCceEEECCeecCCCCHHHHhccceEEcCCCc-ccc--
Q 011713 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP----ENGRILIDGLDICSMGLKDLRTKLSIIPQEPT-LFR-- 321 (479)
Q Consensus 249 vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p----~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~-lF~-- 321 (479)
+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..++.++||+|++. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57899999999999999999999999999999999999 899999999998764 223468999999995 343
Q ss_pred ccHHhhcCCC----CCC---CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEe
Q 011713 322 GSVRTNLDPL----GMY---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILD 394 (479)
Q Consensus 322 gTi~eNi~~~----~~~---~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLD 394 (479)
-|+.+|+... ... ..+++.++++..++.+ + ++........||||||||++||||++++|++||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4888887421 111 1344666677666542 1 12334455789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhcc-CchHHH
Q 011713 395 EATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMKT-NSAFSK 463 (479)
Q Consensus 395 E~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~-~g~y~~ 463 (479)
|||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++... ...|.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 99999999999999999998753 789999999999986 5999999999999999999999864 344443
No 275
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-44 Score=378.15 Aligned_cols=212 Identities=24% Similarity=0.339 Sum_probs=178.8
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHH-Hhccc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL 310 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~-lr~~i 310 (479)
-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.+
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 3899999999963 35999999999999999999999999999999999999999999999999998887654 35679
Q ss_pred eEEcCCCccccc-cHHhhcCCCC-------C---CCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHH
Q 011713 311 SIIPQEPTLFRG-SVRTNLDPLG-------M---YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (479)
Q Consensus 311 ~~V~Q~~~lF~g-Ti~eNi~~~~-------~---~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQr 375 (479)
+||+|++.+|.. |++||+.+.. . .+. +++.++++..++. +-.+.++ ..||||||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-------~~~~~~~----~~LSgG~~ 151 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK-------VDLDEKV----ANLSISHK 151 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC-------CCcccch----hhCCHHHH
Confidence 999999998875 9999996421 0 011 2334444444432 2223333 57999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhh
Q 011713 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSN 453 (479)
Q Consensus 376 QRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~e 453 (479)
||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence 99999999999999999999999999999999999998864 47899999999998865 99999999999999999988
Q ss_pred hhc
Q 011713 454 LMK 456 (479)
Q Consensus 454 Ll~ 456 (479)
+..
T Consensus 232 ~~~ 234 (510)
T PRK09700 232 VSN 234 (510)
T ss_pred CCH
Confidence 753
No 276
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.2e-44 Score=331.10 Aligned_cols=193 Identities=22% Similarity=0.298 Sum_probs=164.0
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.. ....+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 789999999964 359999999999999999999999999999999999999999999999999875 34578899999
Q ss_pred EcCCCccc-cccHHhhcCCCC--CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCC
Q 011713 313 IPQEPTLF-RGSVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389 (479)
Q Consensus 313 V~Q~~~lF-~gTi~eNi~~~~--~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~ 389 (479)
++|++.+| ..|++||+.+.. ...+.++.++++..++.+. .+.++ ..||||||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHL-------IDYPC----GLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchh-------hhCCh----hhcCHHHHHHHHHHHHHhcCCC
Confidence 99999986 579999997532 1223455556665555332 23333 4699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcCCEEEE
Q 011713 390 ILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMV 439 (479)
Q Consensus 390 iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~v 439 (479)
+|||||||++||+.+...+.+.|++.. +++|+|++||+...+.+||.-++
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999999863 57899999999999999997543
No 277
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=6.4e-44 Score=340.59 Aligned_cols=191 Identities=29% Similarity=0.413 Sum_probs=158.8
Q ss_pred CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEc-CCCccc-cccH
Q 011713 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP-QEPTLF-RGSV 324 (479)
Q Consensus 247 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~-Q~~~lF-~gTi 324 (479)
+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ...+|++++|++ |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4599999999999999999999999999999999999999999999999987653 346788999997 667776 4699
Q ss_pred HhhcCCCC---CCCHHH----HHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 011713 325 RTNLDPLG---MYSDNE----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (479)
Q Consensus 325 ~eNi~~~~---~~~~~~----i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~T 397 (479)
+||+.+.. ..+.++ +.++++..++.+ ..++.+ ..||||||||++||||++.+|++|||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEE-------LLDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-------HhcCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99985321 223332 334444444433 234443 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCCEEEEec
Q 011713 398 ASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGELVEYD 449 (479)
Q Consensus 398 SaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G 449 (479)
++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999998743 7899999999998755 9999999999998765
No 278
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=8.8e-44 Score=375.72 Aligned_cols=211 Identities=24% Similarity=0.334 Sum_probs=176.7
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHH-Hhccc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL 310 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~-lr~~i 310 (479)
-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.+
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 3899999999963 45999999999999999999999999999999999999999999999999997765544 46789
Q ss_pred eEEcCCCccccc-cHHhhcCCCCC-------CCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHH
Q 011713 311 SIIPQEPTLFRG-SVRTNLDPLGM-------YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (479)
Q Consensus 311 ~~V~Q~~~lF~g-Ti~eNi~~~~~-------~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRl 378 (479)
+||+|++.+|.. |++||+.+... .+. +++.++++..++.+ -.+.+ -..||||||||+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~----~~~LSgG~~qrv 150 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF-------SSDKL----VGELSIGEQQMV 150 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-------CccCc----hhhCCHHHHHHH
Confidence 999999998875 99999975311 122 22334444443322 12333 357999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhh
Q 011713 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 379 aiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
+|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 99999999999999999999999999999999998863 4789999999999886 49999999999999999988764
No 279
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-43 Score=331.23 Aligned_cols=194 Identities=25% Similarity=0.372 Sum_probs=168.9
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.... ..++++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 789999999964 35999999999999999999999999999999999999999999999999987654 457888999
Q ss_pred EcCCCcccc-ccHHhhcCCCC----CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcC
Q 011713 313 IPQEPTLFR-GSVRTNLDPLG----MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (479)
Q Consensus 313 V~Q~~~lF~-gTi~eNi~~~~----~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~ 387 (479)
++|++.++. .|++||+.+.. ..+++++.++++..++.++..+. ...||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVP-----------VRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHHHHHHhcC
Confidence 999998886 59999996431 13456788899999887665432 357999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcC-CEEEEE
Q 011713 388 NRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDS-DMVMVL 440 (479)
Q Consensus 388 p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~-D~I~vl 440 (479)
|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+..| +|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999998864 478999999999999664 677766
No 280
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.8e-43 Score=372.72 Aligned_cols=211 Identities=19% Similarity=0.219 Sum_probs=183.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 4 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 4 LQISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred EEEEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 899999999964 349999999999999999999999999999999999999999999999998877777778888999
Q ss_pred EcCCCcc--c-------cccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 011713 313 IPQEPTL--F-------RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (479)
Q Consensus 313 V~Q~~~l--F-------~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA 383 (479)
++|++.+ | .-|+++|+... ...++++.++++..++.+.....| ..||||||||++||||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la~a 149 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDE-VKDPARCEQLAQQFGITALLDRRF-----------KYLSTGETRKTLLCQA 149 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccc-hhHHHHHHHHHHHcCCHhhhhCCc-----------ccCCHHHHHHHHHHHH
Confidence 9998753 2 45899988642 123456777888887765544333 5799999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhcc
Q 011713 384 LLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 384 ll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
|+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+++..|+.++++..
T Consensus 150 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 150 LMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 999999999999999999999999999998864 37899999999998865 999999999999999999988753
No 281
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-44 Score=318.59 Aligned_cols=223 Identities=26% Similarity=0.426 Sum_probs=183.4
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHH-hccc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKL 310 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~l-r~~i 310 (479)
.+..+|+..+|.. ++|++|+||++++||.|++.||+|+||||.+.++.|+..|++|+|.+||.|++.++...- |--|
T Consensus 4 ~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 4 TLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred EEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 4788999999964 459999999999999999999999999999999999999999999999999999998754 5569
Q ss_pred eEEcCCCccccc-cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCC
Q 011713 311 SIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389 (479)
Q Consensus 311 ~~V~Q~~~lF~g-Ti~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~ 389 (479)
||+||||.+|.+ |++|||...-+..+...+.+-++..+++.++.+ .+...-...|..||||||+|+.|||||..+|+
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhcCCC
Confidence 999999999988 999999632122111122222332333333332 23333345678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEccCch-hhhcCCEEEEEeCCEEEEecChhhhhccC
Q 011713 390 ILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVP-TITDSDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 390 iliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaHrl~-~i~~~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
.++||||++++||.+-..|++.++.+.. |--+++.-|... |+.-|||.|++.+|+|..+|+++|+.++.
T Consensus 160 fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 160 FILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred EEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 9999999999999999999999988764 566666678865 78889999999999999999999998764
No 282
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.1e-43 Score=358.86 Aligned_cols=215 Identities=26% Similarity=0.465 Sum_probs=185.2
Q ss_pred cEEEEeEEEEeCCCCC--ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCC----CceEEECCeecCCCCHHH
Q 011713 232 RIELEDLKVRYRPNTP--LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE----NGRILIDGLDICSMGLKD 305 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~--~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~----~G~I~i~g~~i~~~~~~~ 305 (479)
-++++|++..|..... ++++||||+|.+||.+||||+|||||||+++.|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 4899999999964432 4999999999999999999999999999999999999988 899999999999998876
Q ss_pred Hh----ccceEEcCCCc-cccc--cHHhhcC----CCCC----CCHHHHHHHHHHccHHHHHHh--CCccccccccCCCC
Q 011713 306 LR----TKLSIIPQEPT-LFRG--SVRTNLD----PLGM----YSDNEIWEAMEKCQLKATISR--LPMLLDSSVSDEGE 368 (479)
Q Consensus 306 lr----~~i~~V~Q~~~-lF~g--Ti~eNi~----~~~~----~~~~~i~~a~~~a~l~~~i~~--lp~G~~T~vge~G~ 368 (479)
+| +.|++|||+|. .|+- ||.+-|. .... ...++..+.++.+++.+-... .| .
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yP-----------h 153 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYP-----------H 153 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCC-----------c
Confidence 64 46999999987 5654 6665553 1111 134567778888888655444 44 6
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhc-CCEEEEEeCCEE
Q 011713 369 NWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGEL 445 (479)
Q Consensus 369 ~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-~D~I~vl~~G~I 445 (479)
.||||||||+.||+||..+|++||+||||.+||+.+.++|++.|+++. .+.++|+|||.+..+.. ||||+||++|++
T Consensus 154 eLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~i 233 (539)
T COG1123 154 QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233 (539)
T ss_pred ccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEE
Confidence 899999999999999999999999999999999999999999999876 58999999999999866 999999999999
Q ss_pred EEecChhhhhcc
Q 011713 446 VEYDLPSNLMKT 457 (479)
Q Consensus 446 ve~G~~~eLl~~ 457 (479)
||.|+.++++++
T Consensus 234 VE~G~~~~i~~~ 245 (539)
T COG1123 234 VETGPTEEILSN 245 (539)
T ss_pred EEecCHHHHHhc
Confidence 999999999973
No 283
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.3e-43 Score=374.95 Aligned_cols=214 Identities=28% Similarity=0.450 Sum_probs=179.1
Q ss_pred cEEEEeEEEEeCC---------CCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCC
Q 011713 232 RIELEDLKVRYRP---------NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG 302 (479)
Q Consensus 232 ~I~~~~vsf~Y~~---------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~ 302 (479)
-|+++||+++|+. ...++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|+++|.++..++
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 4899999999952 1245999999999999999999999999999999999999 58999999999998776
Q ss_pred HHH---HhccceEEcCCC--cccc-ccHHhhcCCC---C--CCC----HHHHHHHHHHccHH-HHHHhCCccccccccCC
Q 011713 303 LKD---LRTKLSIIPQEP--TLFR-GSVRTNLDPL---G--MYS----DNEIWEAMEKCQLK-ATISRLPMLLDSSVSDE 366 (479)
Q Consensus 303 ~~~---lr~~i~~V~Q~~--~lF~-gTi~eNi~~~---~--~~~----~~~i~~a~~~a~l~-~~i~~lp~G~~T~vge~ 366 (479)
... +|++++||||++ .+|. .|++||+.+. . ..+ ++++.++++..++. +...+ .
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~ 422 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHR-----------Y 422 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhc-----------C
Confidence 543 578899999998 3665 4999999642 1 111 23455556666553 22222 2
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCC
Q 011713 367 GENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYG 443 (479)
Q Consensus 367 G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G 443 (479)
...||||||||++||||++.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 357999999999999999999999999999999999999999999998743 7899999999998865 9999999999
Q ss_pred EEEEecChhhhhcc
Q 011713 444 ELVEYDLPSNLMKT 457 (479)
Q Consensus 444 ~Ive~G~~~eLl~~ 457 (479)
+|++.|++++++..
T Consensus 503 ~i~~~~~~~~~~~~ 516 (529)
T PRK15134 503 EVVEQGDCERVFAA 516 (529)
T ss_pred EEEEEcCHHHHhcC
Confidence 99999999999863
No 284
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-44 Score=326.93 Aligned_cols=213 Identities=25% Similarity=0.430 Sum_probs=182.7
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHH-hccce
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKLS 311 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~l-r~~i~ 311 (479)
++.++++.+|.+- .+++||||++++||++||+|||||||||++|++.|+|+|++|+|.++|.||..+++... |.-|+
T Consensus 5 L~v~~l~k~FGGl--~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 5 LEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeccceeecCCE--EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 6789999999653 49999999999999999999999999999999999999999999999999999998875 55689
Q ss_pred EEcCCCccccc-cHHhhcCCCCC-------------C--CH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCC
Q 011713 312 IIPQEPTLFRG-SVRTNLDPLGM-------------Y--SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 371 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~~~-------------~--~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LS 371 (479)
--+|.+.+|++ |+.||+..+.. + .+ |+.++.|+.++| +-.-.+...+||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL-----------~~~a~~~A~~Ls 151 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGL-----------GELADRPAGNLS 151 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCC-----------chhhcchhhcCC
Confidence 99999999988 99999953210 1 12 233333444444 334444556899
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCCEEEEe
Q 011713 372 VGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGELVEY 448 (479)
Q Consensus 372 gGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~ 448 (479)
+||+.||.|||||..+|++|+||||.++|.+.-...+.+.|++..+ +.|+++|-|++..+.. ||||+||+.|+++.+
T Consensus 152 yG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAe 231 (250)
T COG0411 152 YGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAE 231 (250)
T ss_pred hhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCccc
Confidence 9999999999999999999999999999999998899999998874 4899999999998765 999999999999999
Q ss_pred cChhhhhccC
Q 011713 449 DLPSNLMKTN 458 (479)
Q Consensus 449 G~~~eLl~~~ 458 (479)
|+|+|..++.
T Consensus 232 G~P~eV~~dp 241 (250)
T COG0411 232 GTPEEVRNNP 241 (250)
T ss_pred CCHHHHhcCH
Confidence 9999988764
No 285
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-43 Score=371.30 Aligned_cols=207 Identities=26% Similarity=0.350 Sum_probs=173.8
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCH-HHHhccc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKL 310 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~-~~lr~~i 310 (479)
-|+++||+++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. +.+|++|
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 3899999999964 359999999999999999999999999999999999999999999999999876543 4568899
Q ss_pred eEEcCCCccccc-cHHhhcCCCC-----C-CCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHH
Q 011713 311 SIIPQEPTLFRG-SVRTNLDPLG-----M-YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 311 ~~V~Q~~~lF~g-Ti~eNi~~~~-----~-~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRla 379 (479)
+||+|++.+|.. |++||+.+.. . .+. +++.++++..++. .........||||||||++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~ 150 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD-----------IDPDTPLKYLSIGQRQMVE 150 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC-----------CCcCCchhhCCHHHHHHHH
Confidence 999999999876 9999997531 1 122 2344444444432 1222334579999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecCh
Q 011713 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLP 451 (479)
Q Consensus 380 iARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~ 451 (479)
|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.++.
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999999998864 47899999999998765 999999999999987653
No 286
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.2e-43 Score=327.26 Aligned_cols=193 Identities=28% Similarity=0.372 Sum_probs=167.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. . .+|++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~~ 77 (207)
T PRK13539 3 LEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACHY 77 (207)
T ss_pred EEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcEE
Confidence 789999999964 359999999999999999999999999999999999999999999999998753 2 28889999
Q ss_pred EcCCCccc-cccHHhhcCCCC---CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 011713 313 IPQEPTLF-RGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (479)
Q Consensus 313 V~Q~~~lF-~gTi~eNi~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p 388 (479)
++|++.++ ..|++||+.+.. ...++++.++++..++.++... | + ..||||||||++||||++++|
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~------~----~~LS~G~~qrl~la~al~~~p 146 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL-P------F----GYLSAGQKRRVALARLLVSNR 146 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcC-C------h----hhcCHHHHHHHHHHHHHhcCC
Confidence 99988775 579999996421 2345678888999988764432 2 1 379999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHH-CCCcEEEEEccCchhhhcCCEEEEEeC
Q 011713 389 RILILDEATASIDSATDAILQRIIREE-FPGSTVITIAHRVPTITDSDMVMVLSY 442 (479)
Q Consensus 389 ~iliLDE~TSaLD~~te~~i~~~l~~~-~~~~TvI~IaHrl~~i~~~D~I~vl~~ 442 (479)
++|||||||++||+.+...+.+.|++. .+++|+|++||++..+.. |+++.++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 147 PIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 999999999999999999999999875 357999999999999998 99988854
No 287
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-43 Score=329.45 Aligned_cols=192 Identities=27% Similarity=0.471 Sum_probs=169.1
Q ss_pred cEEEEeEEEEeCCCC-------CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHH
Q 011713 232 RIELEDLKVRYRPNT-------PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~-------~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~ 304 (479)
-++++|++..|+-.. -.+++||||+|++||+++|||+|||||||+.++|+|+++|++|+|+++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 378999999996432 25899999999999999999999999999999999999999999999999987766
Q ss_pred HHhccceEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHH-HHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 011713 305 DLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~-~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA 383 (479)
.+...+++.+.++.+|+.+ +..+.| ..||||||||++||||
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IARA 123 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIARA 123 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHHH
Confidence 2223577999999999865 667777 5799999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhc-cCc
Q 011713 384 LLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMK-TNS 459 (479)
Q Consensus 384 ll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~-~~g 459 (479)
|.-+|+++++|||||+||.-.+.+|.+.+.++. .+-|.++|||+++.+++ ||||.||..|+|||.|+-+++.+ ..-
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~H 203 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLH 203 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCC
Confidence 999999999999999999999999999987754 37899999999999998 99999999999999999999997 333
Q ss_pred hHHH
Q 011713 460 AFSK 463 (479)
Q Consensus 460 ~y~~ 463 (479)
.|.+
T Consensus 204 pYTk 207 (268)
T COG4608 204 PYTK 207 (268)
T ss_pred HHHH
Confidence 4543
No 288
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-43 Score=380.57 Aligned_cols=217 Identities=24% Similarity=0.351 Sum_probs=177.6
Q ss_pred cEEEEeEEEEeCCC--CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecC----------
Q 011713 232 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC---------- 299 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~---------- 299 (479)
-|+++|++++|+.. ..++|+||||++++||++||||+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 49999999999632 236999999999999999999999999999999999999999999999997552
Q ss_pred CCCHH---HHh-ccceEEcCCC--cccc-ccHHhhcCCC----CCCCH----HHHHHHHHHccHHHHHHhCCcccccccc
Q 011713 300 SMGLK---DLR-TKLSIIPQEP--TLFR-GSVRTNLDPL----GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVS 364 (479)
Q Consensus 300 ~~~~~---~lr-~~i~~V~Q~~--~lF~-gTi~eNi~~~----~~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vg 364 (479)
+.+.. .+| +.|+||+|+| .++. -|++||+.+. ...+. +++.++++..++.+. +....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHHh
Confidence 22322 334 4799999998 5776 4999999642 11222 345566666665210 11122
Q ss_pred CCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-C-CcEEEEEccCchhhhc-CCEEEEEe
Q 011713 365 DEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-P-GSTVITIAHRVPTITD-SDMVMVLS 441 (479)
Q Consensus 365 e~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~-~~TvI~IaHrl~~i~~-~D~I~vl~ 441 (479)
.....||||||||++|||||+.+|++|||||||++||+.+.+.+.+.++++. + ++|+|+|||++..+.. ||||++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 3336799999999999999999999999999999999999999999999875 3 7899999999998754 99999999
Q ss_pred CCEEEEecChhhhhc
Q 011713 442 YGELVEYDLPSNLMK 456 (479)
Q Consensus 442 ~G~Ive~G~~~eLl~ 456 (479)
+|+|++.|++++++.
T Consensus 244 ~G~i~~~g~~~~~~~ 258 (623)
T PRK10261 244 QGEAVETGSVEQIFH 258 (623)
T ss_pred CCeecccCCHHHhhc
Confidence 999999999999875
No 289
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=5.8e-43 Score=325.28 Aligned_cols=192 Identities=23% Similarity=0.341 Sum_probs=164.2
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ..+++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 578999999964 35999999999999999999999999999999999999999999999999988765 467889999
Q ss_pred EcCCCcccc-ccHHhhcCCCC---CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 011713 313 IPQEPTLFR-GSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (479)
Q Consensus 313 V~Q~~~lF~-gTi~eNi~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p 388 (479)
++|++.+|. .|++||+.+.. ...++++.++++..++.++....| ..||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPA-----------AQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCCh-----------hhcCHHHHHHHHHHHHHhcCC
Confidence 999999887 69999996421 112446888888888877654322 579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHH-CCCcEEEEEccCchhhhcCCEEEE
Q 011713 389 RILILDEATASIDSATDAILQRIIREE-FPGSTVITIAHRVPTITDSDMVMV 439 (479)
Q Consensus 389 ~iliLDE~TSaLD~~te~~i~~~l~~~-~~~~TvI~IaHrl~~i~~~D~I~v 439 (479)
+++||||||++||+.+.+.+.+.|+++ .+++|+|++||+...+. |++.+.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEee
Confidence 999999999999999999999999886 45789999999985443 355543
No 290
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.6e-43 Score=371.97 Aligned_cols=218 Identities=25% Similarity=0.420 Sum_probs=179.8
Q ss_pred cEEEEeEEEEeCCC--CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCceEEECCeecCCCCHH
Q 011713 232 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSMGLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-----~~G~I~i~g~~i~~~~~~ 304 (479)
-|+++||+++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 38999999999632 24699999999999999999999999999999999999987 799999999999887654
Q ss_pred H---Hh-ccceEEcCCCc--ccc-ccHHhhcCC----CCCCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCC
Q 011713 305 D---LR-TKLSIIPQEPT--LFR-GSVRTNLDP----LGMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGEN 369 (479)
Q Consensus 305 ~---lr-~~i~~V~Q~~~--lF~-gTi~eNi~~----~~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~ 369 (479)
+ +| ++++||+|++. ++. -|+++|+.+ ....+ .+++.++++..++.+.... .+ .....
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----~~----~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKR----LT----DYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH----Hh----hCCcc
Confidence 3 34 57999999985 444 489998752 11112 3456677777776432100 12 22357
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhc-CCEEEEEeCCEEE
Q 011713 370 WSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGELV 446 (479)
Q Consensus 370 LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Iv 446 (479)
||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++. .++|+|+|||++..+.. ||||++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998864 37899999999998764 9999999999999
Q ss_pred EecChhhhhcc
Q 011713 447 EYDLPSNLMKT 457 (479)
Q Consensus 447 e~G~~~eLl~~ 457 (479)
+.|++++++..
T Consensus 237 ~~g~~~~~~~~ 247 (529)
T PRK15134 237 EQNRAATLFSA 247 (529)
T ss_pred EeCCHHHHhhC
Confidence 99999998753
No 291
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.8e-43 Score=328.27 Aligned_cols=195 Identities=24% Similarity=0.304 Sum_probs=165.3
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
-++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 4899999999964 3599999999999999999999999999999999999999999999999998753 3466899
Q ss_pred EEcCCCccccc-cHHhhcCCC----CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc
Q 011713 312 IIPQEPTLFRG-SVRTNLDPL----GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~----~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~ 386 (479)
|++|++.+|.+ |++||+.+. ....++.+.++++..++.+ .+++.+ ..||||||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~----~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAG-------YEDTLV----RQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChh-------hccCCh----hhCCHHHHHHHHHHHHHhc
Confidence 99999999987 999999532 1112344556666665533 234333 5799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhh-cCCEEEEEeC
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSY 442 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~~D~I~vl~~ 442 (479)
+|++|||||||++||+++.+.+.+.+++.. +++|+|++||+++.+. .||++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999998753 4789999999999885 5899999874
No 292
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=376.12 Aligned_cols=213 Identities=25% Similarity=0.386 Sum_probs=184.6
Q ss_pred cEEEEeEEEEeCCC--CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHH---
Q 011713 232 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL--- 306 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~l--- 306 (479)
-++++|++++|++. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 48999999999642 2469999999999999999999999999999999999999999999999999999887764
Q ss_pred -hccceEEcCCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHH
Q 011713 307 -RTKLSIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 307 -r~~i~~V~Q~~~lF~g-Ti~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
|+.++|++|++.+|++ |+.||+.+.. ..+ ++++.++++..++.+++.. ....|||||+||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~-----------~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEY-----------QPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcC-----------CcccCCHHHHHH
Confidence 5789999999999975 9999996421 111 2234455555555544433 346899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhh
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
++|||||+++|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.++.||++++|++|+++++|+.+|..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999999999998875 479999999999999999999999999999999999886
No 293
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.1e-42 Score=374.92 Aligned_cols=198 Identities=25% Similarity=0.334 Sum_probs=169.8
Q ss_pred CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCC--CceEEECCeecCCCCHHHHhccceEEcCCCccccc-c
Q 011713 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE--NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-S 323 (479)
Q Consensus 247 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~--~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~g-T 323 (479)
+.+|+|+|+++++||++||+||||||||||+++|+|+.+|+ +|+|.+||.++. ...+++++||+|++.+|.. |
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 45999999999999999999999999999999999999985 999999999874 2456789999999999964 9
Q ss_pred HHhhcCCC-----C-CCCHHH----HHHHHHHccHHHHHHhCCccccccccCC-CCCCChhHHHHHHHHHHhhcCCCEEE
Q 011713 324 VRTNLDPL-----G-MYSDNE----IWEAMEKCQLKATISRLPMLLDSSVSDE-GENWSVGQRQLFCLGRVLLKRNRILI 392 (479)
Q Consensus 324 i~eNi~~~-----~-~~~~~~----i~~a~~~a~l~~~i~~lp~G~~T~vge~-G~~LSgGQrQRlaiARAll~~p~ili 392 (479)
++||+.+. + ..++++ +.++++..+ |++..||.+|+. ...||||||||++|||||+++|+||+
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC-------ChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 99999642 1 233333 233333333 344568999864 67899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchh--hhcCCEEEEEeCCEEEEecChhhhh
Q 011713 393 LDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPT--ITDSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 393 LDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~--i~~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
||||||+||+.+...+.+.|+++. +++|+|+++|+++. .+.||+|++|++|+++..|+++++.
T Consensus 230 LDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 230 LDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295 (659)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHH
Confidence 999999999999999999999875 58999999999984 5679999999999999999999985
No 294
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-43 Score=368.02 Aligned_cols=212 Identities=23% Similarity=0.328 Sum_probs=175.1
Q ss_pred EEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCH-HHHhccceEE
Q 011713 235 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKLSII 313 (479)
Q Consensus 235 ~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~-~~lr~~i~~V 313 (479)
++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|+.++||
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 4689999964 359999999999999999999999999999999999999999999999999976654 4467889999
Q ss_pred cCCCcccc-ccHHhhcCCCC----C--CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc
Q 011713 314 PQEPTLFR-GSVRTNLDPLG----M--YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (479)
Q Consensus 314 ~Q~~~lF~-gTi~eNi~~~~----~--~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~ 386 (479)
||++.+|. .|++||+.+.. . .+.++.++. +.+.++.+ |++.........||||||||++|||||++
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRD-----TKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHH-----HHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 99998776 49999997431 1 122222111 22333333 33333444457899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhh
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+++++.
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 999999999999999999999999998864 4789999999999876 49999999999999999988864
No 295
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6.4e-43 Score=370.98 Aligned_cols=219 Identities=24% Similarity=0.392 Sum_probs=176.4
Q ss_pred cEEEEeEEEEeCC---CCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEC-Cee---cCCCC--
Q 011713 232 RIELEDLKVRYRP---NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID-GLD---ICSMG-- 302 (479)
Q Consensus 232 ~I~~~~vsf~Y~~---~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~-g~~---i~~~~-- 302 (479)
-|+++||+++|++ ...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 4999999999953 23469999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHHhccceEEcCCCccccc-cHHhhcCCC-C-CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhH
Q 011713 303 -LKDLRTKLSIIPQEPTLFRG-SVRTNLDPL-G-MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 374 (479)
Q Consensus 303 -~~~lr~~i~~V~Q~~~lF~g-Ti~eNi~~~-~-~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQ 374 (479)
...+|++|+||||++.+|.. |++||+.+. . ... ++++.++++..++.+. ..+.........|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHHH
Confidence 23467789999999988875 999999631 1 111 2344555565555320 00001122235799999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCCEEEEecCh
Q 011713 375 RQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLP 451 (479)
Q Consensus 375 rQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~ 451 (479)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|++++.|++
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999988642 7899999999998865 999999999999999999
Q ss_pred hhhhc
Q 011713 452 SNLMK 456 (479)
Q Consensus 452 ~eLl~ 456 (479)
+++.+
T Consensus 513 ~~~~~ 517 (520)
T TIGR03269 513 EEIVE 517 (520)
T ss_pred HHHHh
Confidence 88754
No 296
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-42 Score=334.04 Aligned_cols=212 Identities=22% Similarity=0.272 Sum_probs=173.2
Q ss_pred cEEEEeEEEEeCC------------------CCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEE
Q 011713 232 RIELEDLKVRYRP------------------NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI 293 (479)
Q Consensus 232 ~I~~~~vsf~Y~~------------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i 293 (479)
+|+++||+.+|.. ...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 4778888777643 1235899999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhccceEEcCCCcccc-ccHHhhcCCC---CCCCHHHHH----HHHHHccHHHHHHhCCccccccccC
Q 011713 294 DGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVRTNLDPL---GMYSDNEIW----EAMEKCQLKATISRLPMLLDSSVSD 365 (479)
Q Consensus 294 ~g~~i~~~~~~~lr~~i~~V~Q~~~lF~-gTi~eNi~~~---~~~~~~~i~----~a~~~a~l~~~i~~lp~G~~T~vge 365 (479)
+|. +++++|++.+++ .|+++|+.+. ...+.++.. ++++..++.+++ ..
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~ 139 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFI-----------YQ 139 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cC
Confidence 994 467788887664 5999999642 123344433 344444444433 33
Q ss_pred CCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCC
Q 011713 366 EGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYG 443 (479)
Q Consensus 366 ~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G 443 (479)
....||||||||++||||++++|++|||||||++||+.+.+.+.+.+.++. .++|+|++||++..+.. ||+|++|++|
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G 219 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECC
Confidence 456899999999999999999999999999999999999999999998764 47899999999998865 9999999999
Q ss_pred EEEEecChhhhhccCchHHHHHHH
Q 011713 444 ELVEYDLPSNLMKTNSAFSKLVAE 467 (479)
Q Consensus 444 ~Ive~G~~~eLl~~~g~y~~l~~~ 467 (479)
+|++.|++++++.+...|.+.+..
T Consensus 220 ~i~~~g~~~~~~~~~~~~~~~~~~ 243 (264)
T PRK13546 220 KLKDYGELDDVLPKYEAFLNDFKK 243 (264)
T ss_pred EEEEeCCHHHHHHHhHHHHHHHHh
Confidence 999999999999866555555543
No 297
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.1e-42 Score=333.58 Aligned_cols=220 Identities=30% Similarity=0.510 Sum_probs=186.1
Q ss_pred ccEEEEeEEEEeCCC---------CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCC
Q 011713 231 GRIELEDLKVRYRPN---------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM 301 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~---------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~ 301 (479)
.-++.+||...|+-. .-.+.++|||++++||+++|||+||||||||-..|+|+.+++ |+|.++|.++..+
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 358999999988532 124799999999999999999999999999999999999876 9999999999999
Q ss_pred CHHH---HhccceEEcCCCc--cc-cccHHhhcC----CCC-C----CCHHHHHHHHHHccHHHHH-HhCCccccccccC
Q 011713 302 GLKD---LRTKLSIIPQEPT--LF-RGSVRTNLD----PLG-M----YSDNEIWEAMEKCQLKATI-SRLPMLLDSSVSD 365 (479)
Q Consensus 302 ~~~~---lr~~i~~V~Q~~~--lF-~gTi~eNi~----~~~-~----~~~~~i~~a~~~a~l~~~i-~~lp~G~~T~vge 365 (479)
+.++ +|+++-+|+|||+ |= .-||.+=|. ... . -.++++.+|++.+|++.-. .+.|
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP--------- 424 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP--------- 424 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCC---------
Confidence 8776 5889999999998 22 236655542 111 1 2357889999999997644 3445
Q ss_pred CCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhc-CCEEEEEeC
Q 011713 366 EGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSY 442 (479)
Q Consensus 366 ~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-~D~I~vl~~ 442 (479)
..+|||||||||||||+.-+|++++|||||||||.....+|.+.++++- .+-+-++|||+|..++. ||+++||++
T Consensus 425 --hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~ 502 (534)
T COG4172 425 --HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRD 502 (534)
T ss_pred --cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeC
Confidence 5799999999999999999999999999999999999999999998763 47799999999999987 999999999
Q ss_pred CEEEEecChhhhhcc-CchHH
Q 011713 443 GELVEYDLPSNLMKT-NSAFS 462 (479)
Q Consensus 443 G~Ive~G~~~eLl~~-~g~y~ 462 (479)
|+|||+|+-++++++ ...|.
T Consensus 503 GkiVE~G~~~~if~~P~~~YT 523 (534)
T COG4172 503 GKIVEQGPTEAVFANPQHEYT 523 (534)
T ss_pred CEEeeeCCHHHHhcCCCcHHH
Confidence 999999999999974 44554
No 298
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.3e-42 Score=367.17 Aligned_cols=210 Identities=27% Similarity=0.366 Sum_probs=174.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCceEEECCeecCCCCHHH-Hhcc
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDICSMGLKD-LRTK 309 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p--~~G~I~i~g~~i~~~~~~~-lr~~ 309 (479)
|+++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+... .|+.
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 789999999963 3599999999999999999999999999999999999987 7999999999998877654 4678
Q ss_pred ceEEcCCCccccc-cHHhhcCCCCC-------CCHH----HHHHHHHHccHHHHHHhCCccc-cccccCCCCCCChhHHH
Q 011713 310 LSIIPQEPTLFRG-SVRTNLDPLGM-------YSDN----EIWEAMEKCQLKATISRLPMLL-DSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 310 i~~V~Q~~~lF~g-Ti~eNi~~~~~-------~~~~----~i~~a~~~a~l~~~i~~lp~G~-~T~vge~G~~LSgGQrQ 376 (479)
++||||++.+|.. |++||+.+... .+.+ ++.++++..++. +.+ +.+ ...|||||||
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~----~~~LSgG~~q 148 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLD-------ADNVTRP----VGDYGGGQQQ 148 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCC-------CCcccCc----hhhCCHHHHH
Confidence 9999999988875 99999964311 1112 233333333321 111 222 3469999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhh
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eL 454 (479)
|++|||||+++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999999999998764 47899999999998865 999999999999999987765
Q ss_pred h
Q 011713 455 M 455 (479)
Q Consensus 455 l 455 (479)
.
T Consensus 229 ~ 229 (500)
T TIGR02633 229 S 229 (500)
T ss_pred C
Confidence 3
No 299
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.3e-42 Score=329.19 Aligned_cols=198 Identities=26% Similarity=0.380 Sum_probs=162.4
Q ss_pred EEEEeEEEEeCC----C-CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEC--Ce--ecCCCCH
Q 011713 233 IELEDLKVRYRP----N-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID--GL--DICSMGL 303 (479)
Q Consensus 233 I~~~~vsf~Y~~----~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~--g~--~i~~~~~ 303 (479)
|+++||+++|+. . .+++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++ |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 789999999963 1 2469999999999999999999999999999999999999999999998 42 6666665
Q ss_pred HH---H-hccceEEcCCCccccc-cHHhhcCCC---CCCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCC
Q 011713 304 KD---L-RTKLSIIPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 371 (479)
Q Consensus 304 ~~---l-r~~i~~V~Q~~~lF~g-Ti~eNi~~~---~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LS 371 (479)
.. + ++.++|++|++.+|.. |++||+.+. ...+ ++++.++++..++.+... + .....||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~----~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW------H----LPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh------h----CCcccCC
Confidence 43 3 4579999999998875 999998631 1122 234455555555543221 1 2356899
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhh-cCCEEEEE
Q 011713 372 VGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVL 440 (479)
Q Consensus 372 gGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~~D~I~vl 440 (479)
||||||++||||++++|++|||||||++||+.+...+.+.|++.. +++|+|++||++..+. .||+|+.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999998864 4789999999999885 69999876
No 300
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-42 Score=308.28 Aligned_cols=213 Identities=24% Similarity=0.397 Sum_probs=187.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+.+|+|++-.+ +.+|+++||+++|||.+||+||||||||||+|.|+|...|++|++.+||.+++++++.++-++-++
T Consensus 2 i~a~nls~~~~G--r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLAG--RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEeec--ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 788999988754 349999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCcc-ccccHHhhcCCCC-------CCCHHH--HHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 011713 313 IPQEPTL-FRGSVRTNLDPLG-------MYSDNE--IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (479)
Q Consensus 313 V~Q~~~l-F~gTi~eNi~~~~-------~~~~~~--i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiAR 382 (479)
+||+..| |+-|++|-+.++. +..+++ ..+|+.++++..|-.+. =..|||||+||+.+||
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----------y~~LSGGEqQRVqlAR 148 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD-----------YRTLSGGEQQRVQLAR 148 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc-----------hhhcCchHHHHHHHHH
Confidence 9999997 9999999986542 222444 67788888887765442 2579999999999999
Q ss_pred HhhcC------CCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhh
Q 011713 383 VLLKR------NRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 383 All~~------p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eL 454 (479)
.|.+- +++|+||||||+||......+++..+++. .+..|+.|=|+|... ..||||++|.+||++..|++++.
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence 99863 35899999999999999999999998875 478999999999965 56999999999999999999999
Q ss_pred hccC
Q 011713 455 MKTN 458 (479)
Q Consensus 455 l~~~ 458 (479)
+..+
T Consensus 229 lt~E 232 (259)
T COG4559 229 LTDE 232 (259)
T ss_pred cCHH
Confidence 8654
No 301
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.1e-42 Score=299.48 Aligned_cols=206 Identities=26% Similarity=0.364 Sum_probs=176.5
Q ss_pred cEEEEeEEEEeCCC--CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHH---H
Q 011713 232 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---L 306 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~---l 306 (479)
-|++++++.+-+.. .-.+|++|+|.|++||.+|||||||||||||+-+|+|+-+|++|+|.+.|+++.+++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 37888888777543 235899999999999999999999999999999999999999999999999999998664 3
Q ss_pred -hccceEEcCCCcccc-ccHHhhcCC-C---CC-C--CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHH
Q 011713 307 -RTKLSIIPQEPTLFR-GSVRTNLDP-L---GM-Y--SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 307 -r~~i~~V~Q~~~lF~-gTi~eNi~~-~---~~-~--~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
.+++|+|+|..+|.+ -|-.||+.. . ++ . ..+.-.+-++.+|+.+-+...| .+|||||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-----------~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-----------AQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc-----------cccCchHHHH
Confidence 467999999999875 499999852 1 22 1 2233556677777777766666 6899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhcCCEEEEEeCCEEEEe
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITDSDMVMVLSYGELVEY 448 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~ 448 (479)
+|||||+.-.|+||+-||||-+||.+|-.+|-+.+..+- .+.|.++|||+++....|||++.|.+|+|++.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999886643 47899999999999999999999999999863
No 302
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=8.3e-43 Score=330.07 Aligned_cols=192 Identities=24% Similarity=0.384 Sum_probs=162.1
Q ss_pred EEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCcc---ccccHHhhcCCC
Q 011713 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL---FRGSVRTNLDPL 331 (479)
Q Consensus 255 l~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~l---F~gTi~eNi~~~ 331 (479)
|+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..|++++|+||++.+ |+.|+++|+.+.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998764 357789999999976 457999998532
Q ss_pred C---------C--CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCC
Q 011713 332 G---------M--YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASI 400 (479)
Q Consensus 332 ~---------~--~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaL 400 (479)
. . ..++++.++++..++.++... . ...||||||||++||||++++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADR-------P----VGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcC-------C----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 1 1 123457778888887655433 2 2469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHC-CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhccCchHHHH
Q 011713 401 DSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMKTNSAFSKL 464 (479)
Q Consensus 401 D~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l 464 (479)
|+.+...+.+.|+++. +++|+|++||+++.+. .||+|+++ +|++++.|+++++.+.+ .+.++
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~~-~~~~~ 208 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDPA-PWMTT 208 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcChH-HHHHH
Confidence 9999999999998875 4789999999999875 59999999 79999999999987653 34443
No 303
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.1e-42 Score=321.21 Aligned_cols=173 Identities=29% Similarity=0.442 Sum_probs=148.5
Q ss_pred CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCC--CCHHHHhccceEEcCCC--ccccc
Q 011713 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS--MGLKDLRTKLSIIPQEP--TLFRG 322 (479)
Q Consensus 247 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~--~~~~~lr~~i~~V~Q~~--~lF~g 322 (479)
+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .....+|+.++|++|++ .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 459999999999999999999999999999999999999999999999999852 23456788999999998 57888
Q ss_pred cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeC
Q 011713 323 SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDE 395 (479)
Q Consensus 323 Ti~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE 395 (479)
|++||+.+.. ..+ ++++.++++..++.++..+.| ..||||||||++||||++++|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT-----------HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999997421 222 235667777777776555443 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchh
Q 011713 396 ATASIDSATDAILQRIIREEF-PGSTVITIAHRVPT 430 (479)
Q Consensus 396 ~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~ 430 (479)
||++||+.+.+.+.+.|++.. +++|+|++||++..
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999999998864 47899999999864
No 304
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.4e-42 Score=320.27 Aligned_cols=188 Identities=18% Similarity=0.341 Sum_probs=160.9
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++||+++|++ +.++ ++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ++.++|
T Consensus 2 l~~~~l~~~~~~--~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~ 74 (195)
T PRK13541 2 LSLHQLQFNIEQ--KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTY 74 (195)
T ss_pred eEEEEeeEEECC--cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEe
Confidence 789999999963 3344 599999999999999999999999999999999999999999999887643 356999
Q ss_pred EcCCCcc-ccccHHhhcCCCC-C-CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCC
Q 011713 313 IPQEPTL-FRGSVRTNLDPLG-M-YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389 (479)
Q Consensus 313 V~Q~~~l-F~gTi~eNi~~~~-~-~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~ 389 (479)
++|++.+ |..|++||+.+.. . ..++++.++++..++.++..+ .+..||||||||++||||++++|+
T Consensus 75 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rl~la~al~~~p~ 143 (195)
T PRK13541 75 IGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDE-----------KCYSLSSGMQKIVAIARLIACQSD 143 (195)
T ss_pred ccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhcc-----------ChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9998754 6789999997532 1 245677778888887665433 356899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHH-CCCcEEEEEccCchhhhcCCEEE
Q 011713 390 ILILDEATASIDSATDAILQRIIREE-FPGSTVITIAHRVPTITDSDMVM 438 (479)
Q Consensus 390 iliLDE~TSaLD~~te~~i~~~l~~~-~~~~TvI~IaHrl~~i~~~D~I~ 438 (479)
++||||||++||+.+.+.+.+.++.. .+++|+|++||+++.++.||-|.
T Consensus 144 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 144 LWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 99999999999999999999999753 45799999999999999999763
No 305
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.8e-42 Score=367.58 Aligned_cols=211 Identities=28% Similarity=0.467 Sum_probs=174.7
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCceEEEC----------------
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPENGRILID---------------- 294 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~--~p~~G~I~i~---------------- 294 (479)
|+++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 578999999963 35999999999999999999999999999999999996 7999999997
Q ss_pred -------CeecC-------CCC---HHHHhccceEEcCC-Ccccc-ccHHhhcCCC---CCCC----HHHHHHHHHHccH
Q 011713 295 -------GLDIC-------SMG---LKDLRTKLSIIPQE-PTLFR-GSVRTNLDPL---GMYS----DNEIWEAMEKCQL 348 (479)
Q Consensus 295 -------g~~i~-------~~~---~~~lr~~i~~V~Q~-~~lF~-gTi~eNi~~~---~~~~----~~~i~~a~~~a~l 348 (479)
|.++. ..+ ...+|+.++||+|+ +.+|. .|++||+.+. ...+ ++++.++++..++
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 33321 111 23467889999998 56776 4999999641 1122 2356666777776
Q ss_pred HHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEcc
Q 011713 349 KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAH 426 (479)
Q Consensus 349 ~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaH 426 (479)
.++..+. ...||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||
T Consensus 159 ~~~~~~~-----------~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtH 227 (520)
T TIGR03269 159 SHRITHI-----------ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227 (520)
T ss_pred hhhhhcC-----------cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 5544333 36799999999999999999999999999999999999999999998874 3789999999
Q ss_pred Cchhhhc-CCEEEEEeCCEEEEecChhhhhc
Q 011713 427 RVPTITD-SDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 427 rl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
++..+.. ||+|++|++|++++.|+++++..
T Consensus 228 d~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 228 WPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred CHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 9999864 99999999999999999988765
No 306
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-41 Score=348.95 Aligned_cols=211 Identities=23% Similarity=0.279 Sum_probs=174.3
Q ss_pred cEEEEeEEEEeCCC-CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccc
Q 011713 232 RIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i 310 (479)
.++++|++|+|++. .+++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999753 24699999999999999999999999999999999999999999999999752
Q ss_pred eEEcCCCcccc-ccHHhhcCCC---CCCCHHH----HHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 011713 311 SIIPQEPTLFR-GSVRTNLDPL---GMYSDNE----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (479)
Q Consensus 311 ~~V~Q~~~lF~-gTi~eNi~~~---~~~~~~~----i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiAR 382 (479)
++.+.+.++. .|++||+.+. ...+.++ +.++++.+++.+++... ...||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~-----------~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQP-----------VKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCC-----------cccCCHHHHHHHHHHH
Confidence 1223344443 4999998642 1233333 44567777776665443 3679999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhccCch
Q 011713 383 VLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKTNSA 460 (479)
Q Consensus 383 All~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~~g~ 460 (479)
||+.+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++...-..
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~~ 236 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDE 236 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHHH
Confidence 9999999999999999999999999999998864 47899999999998865 999999999999999999999876555
Q ss_pred HHHHHH
Q 011713 461 FSKLVA 466 (479)
Q Consensus 461 y~~l~~ 466 (479)
|.+.+.
T Consensus 237 ~~~~~~ 242 (549)
T PRK13545 237 FLKKYN 242 (549)
T ss_pred HHHHHh
Confidence 555443
No 307
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-42 Score=301.74 Aligned_cols=213 Identities=26% Similarity=0.419 Sum_probs=185.7
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCC----------
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM---------- 301 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~---------- 301 (479)
.++.+|+..+|+.. .||++|||+.++|+.|.|+|.|||||||+++++.=+-.|+.|+|.++|..|+--
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 58999999999754 399999999999999999999999999999999999999999999999877422
Q ss_pred ---CHHHHhccceEEcCCCccccc-cHHhhcCCCC----CCC-H---HHHHHHHHHccHHHHHHhCCccccccccCCCCC
Q 011713 302 ---GLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLG----MYS-D---NEIWEAMEKCQLKATISRLPMLLDSSVSDEGEN 369 (479)
Q Consensus 302 ---~~~~lr~~i~~V~Q~~~lF~g-Ti~eNi~~~~----~~~-~---~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~ 369 (479)
..+.+|.+.++|+|..-|++- |+.||..-.+ ..+ . |+-+.-+.++|+.+--+..| ..
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----------~~ 152 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP-----------AH 152 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----------cc
Confidence 245689999999999999975 9999984111 122 2 33445577888888777776 68
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEE
Q 011713 370 WSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVE 447 (479)
Q Consensus 370 LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive 447 (479)
|||||+||.||||||.-+|+++++|||||||||+--.++.+.++++. .+||.++|||-+...++ +.+++.+++|.|-|
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 99999999999999999999999999999999999888888888865 58999999999999998 79999999999999
Q ss_pred ecChhhhhcc
Q 011713 448 YDLPSNLMKT 457 (479)
Q Consensus 448 ~G~~~eLl~~ 457 (479)
+|+|+++..+
T Consensus 233 ~G~P~qvf~n 242 (256)
T COG4598 233 EGPPEQVFGN 242 (256)
T ss_pred cCChHHHhcC
Confidence 9999999974
No 308
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-42 Score=364.80 Aligned_cols=217 Identities=24% Similarity=0.362 Sum_probs=174.7
Q ss_pred cEEEEeEEEEeCC-CCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC-CCCceEEECCeecCCCCH-HHHhc
Q 011713 232 RIELEDLKVRYRP-NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-PENGRILIDGLDICSMGL-KDLRT 308 (479)
Q Consensus 232 ~I~~~~vsf~Y~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~-p~~G~I~i~g~~i~~~~~-~~lr~ 308 (479)
-|+++||++.|+. ...++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++...+. +.+|+
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999953 23459999999999999999999999999999999999999 599999999999875543 45677
Q ss_pred cceEEcCCC---cccc-ccHHhhcCCCC--CC------CHHHHHHHHHHccHHHHHHhCCccccc-cccCCCCCCChhHH
Q 011713 309 KLSIIPQEP---TLFR-GSVRTNLDPLG--MY------SDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVGQR 375 (479)
Q Consensus 309 ~i~~V~Q~~---~lF~-gTi~eNi~~~~--~~------~~~~i~~a~~~a~l~~~i~~lp~G~~T-~vge~G~~LSgGQr 375 (479)
.++||+|++ .+|. -|+.||+.+.. .. +.++. ...+.++++.+ |++. ........||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE-----LKTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHH-----HHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 3665 59999996421 11 11111 11223344443 2221 12333467999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhh
Q 011713 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSN 453 (479)
Q Consensus 376 QRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~e 453 (479)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|+|+..|+.++
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998764 47999999999998765 99999999999999999887
Q ss_pred hh
Q 011713 454 LM 455 (479)
Q Consensus 454 Ll 455 (479)
+.
T Consensus 492 ~~ 493 (506)
T PRK13549 492 LT 493 (506)
T ss_pred CC
Confidence 64
No 309
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=4.8e-42 Score=324.96 Aligned_cols=193 Identities=26% Similarity=0.312 Sum_probs=155.8
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
+.++|++.+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... ....
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~-- 93 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGG-- 93 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----cccc--
Confidence 677888888864 4599999999999999999999999999999999999999999999999876421 1111
Q ss_pred EcCCCccccccHHhhcCCCC---CCCHH----HHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhh
Q 011713 313 IPQEPTLFRGSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 385 (479)
Q Consensus 313 V~Q~~~lF~gTi~eNi~~~~---~~~~~----~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll 385 (479)
.+..+.|++||+.+.. ..+.+ ++.++++..++.+. +++++ ..||||||||++||||++
T Consensus 94 ----~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LSgG~~qrv~laral~ 158 (224)
T cd03220 94 ----GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDF-------IDLPV----KTYSSGMKARLAFAIATA 158 (224)
T ss_pred ----cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-------hhCCh----hhCCHHHHHHHHHHHHHh
Confidence 1223579999996421 12222 34445555444333 34444 569999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEec
Q 011713 386 KRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYD 449 (479)
Q Consensus 386 ~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G 449 (479)
++|+++||||||++||+.+.+.+.+.|++.. +++|+|++||++..+. .||+|++|++|++++.|
T Consensus 159 ~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 159 LEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999998864 3689999999999875 59999999999998865
No 310
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.2e-42 Score=374.32 Aligned_cols=215 Identities=21% Similarity=0.299 Sum_probs=179.2
Q ss_pred cEEEEeEEEEeCC-------CCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEECCeecCCC
Q 011713 232 RIELEDLKVRYRP-------NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSM 301 (479)
Q Consensus 232 ~I~~~~vsf~Y~~-------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~---~G~I~i~g~~i~~~ 301 (479)
+++|.++. +++. .++++|+|+|+++++||.+||+||||||||||+++|+|..+|. +|+|.+||.++.
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~-- 93 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID-- 93 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC--
Confidence 45666665 4422 2456999999999999999999999999999999999999885 899999999875
Q ss_pred CHHHHhccceEEcCCCccccc-cHHhhcCCCC------CCCHHHHHHHHHHccHHHHHHh--CCccccccccCC--CCCC
Q 011713 302 GLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLG------MYSDNEIWEAMEKCQLKATISR--LPMLLDSSVSDE--GENW 370 (479)
Q Consensus 302 ~~~~lr~~i~~V~Q~~~lF~g-Ti~eNi~~~~------~~~~~~i~~a~~~a~l~~~i~~--lp~G~~T~vge~--G~~L 370 (479)
...+|+.++||+|++.+|+. ||+|||.+.. ..+.++. ...+++.++. |++..||.+|+. +..|
T Consensus 94 -~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~~L 167 (617)
T TIGR00955 94 -AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEK-----RERVDEVLQALGLRKCANTRIGVPGRVKGL 167 (617)
T ss_pred -HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHH-----HHHHHHHHHHcCchhcCcCccCCCCCCCCc
Confidence 46789999999999999965 9999996421 1222221 1223334443 345789999985 4789
Q ss_pred ChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEccCch--hhhcCCEEEEEeCCEEEE
Q 011713 371 SVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVP--TITDSDMVMVLSYGELVE 447 (479)
Q Consensus 371 SgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaHrl~--~i~~~D~I~vl~~G~Ive 447 (479)
|||||||++|||||+++|++++||||||+||+.+...+.+.+++..+ ++|+|+++|+++ ..+.+|+|++|++|++++
T Consensus 168 SgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~ 247 (617)
T TIGR00955 168 SGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAY 247 (617)
T ss_pred CcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEE
Confidence 99999999999999999999999999999999999999999998754 899999999996 367899999999999999
Q ss_pred ecChhhhh
Q 011713 448 YDLPSNLM 455 (479)
Q Consensus 448 ~G~~~eLl 455 (479)
.|+++++.
T Consensus 248 ~G~~~~~~ 255 (617)
T TIGR00955 248 LGSPDQAV 255 (617)
T ss_pred ECCHHHHH
Confidence 99999884
No 311
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=6.9e-42 Score=395.57 Aligned_cols=215 Identities=23% Similarity=0.357 Sum_probs=187.8
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccc
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i 310 (479)
..|+++||+++|+++.+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +...+|+++
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 3699999999996434569999999999999999999999999999999999999999999999999975 566789999
Q ss_pred eEEcCCCccccc-cHHhhcCCC---CCCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 011713 311 SIIPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (479)
Q Consensus 311 ~~V~Q~~~lF~g-Ti~eNi~~~---~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiAR 382 (479)
||+||++.+|+. |++|||.+. ...+ ++++.+.++..++.+.. .....+||||||||++|||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~-----------~~~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKR-----------NEEAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHH
Confidence 999999999975 999999642 1122 24456666666664433 2334679999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhcc
Q 011713 383 VLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 383 All~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
||+.+|++||||||||+||+.+.+.+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|+.++|.++
T Consensus 1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999999998789999999999999864 999999999999999999999764
No 312
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-42 Score=363.90 Aligned_cols=208 Identities=22% Similarity=0.359 Sum_probs=170.1
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCH-HHHhccc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKL 310 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~-~~lr~~i 310 (479)
-|+++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.+
T Consensus 265 ~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 265 VFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred EEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 499999999763 28999999999999999999999999999999999999999999999999876544 4567889
Q ss_pred eEEcCCC---ccccc-cHHhhcCCCCC------------CCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCC
Q 011713 311 SIIPQEP---TLFRG-SVRTNLDPLGM------------YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENW 370 (479)
Q Consensus 311 ~~V~Q~~---~lF~g-Ti~eNi~~~~~------------~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~L 370 (479)
+||||++ .+|.. |++||+.+... .+. +++.++++..++. ++..++++ ..|
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~----~~L 410 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK------CHSVNQNI----TEL 410 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCC------CCCccCcc----ccC
Confidence 9999984 57765 99999974311 011 1223333333221 02234444 569
Q ss_pred ChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEe
Q 011713 371 SVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEY 448 (479)
Q Consensus 371 SgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~ 448 (479)
|||||||++|||||+++|+|||||||||+||+.+...+.+.|+++. +++|+|+|||++..+. .||+|++|++|++++.
T Consensus 411 SgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 490 (510)
T PRK09700 411 SGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490 (510)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998763 4789999999999775 5999999999999998
Q ss_pred cChhh
Q 011713 449 DLPSN 453 (479)
Q Consensus 449 G~~~e 453 (479)
++..+
T Consensus 491 ~~~~~ 495 (510)
T PRK09700 491 LTNRD 495 (510)
T ss_pred ecCcc
Confidence 87634
No 313
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.5e-41 Score=391.88 Aligned_cols=210 Identities=23% Similarity=0.357 Sum_probs=181.1
Q ss_pred cEEEEeEEEEeC--CCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCceEEECCeecCCCCHHHH
Q 011713 232 RIELEDLKVRYR--PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE---PENGRILIDGLDICSMGLKDL 306 (479)
Q Consensus 232 ~I~~~~vsf~Y~--~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~---p~~G~I~i~g~~i~~~~~~~l 306 (479)
.++++||+++|+ +..+++|+|||+++++||++||+||||||||||+++|+|+.+ |++|+|++||.++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 379999999995 234569999999999999999999999999999999999998 78999999999985 257
Q ss_pred hccceEEcCCCc-cccccHHhhcCCC-----C-CCCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHH
Q 011713 307 RTKLSIIPQEPT-LFRGSVRTNLDPL-----G-MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (479)
Q Consensus 307 r~~i~~V~Q~~~-lF~gTi~eNi~~~-----~-~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQr 375 (479)
|+.++||+|++. ++..|++|||.+. + ..++ +++.++++..++. +-.|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-------SYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhCCCeeCCCCCCCCHHHh
Confidence 899999999876 4567999999742 1 2333 2355666666654 3479999999999999999
Q ss_pred HHHHHHHHhhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHH-CCCcEEEEEccCchhh--hcCCEEEEEeCC-EEEEecC
Q 011713 376 QLFCLGRVLLKRNR-ILILDEATASIDSATDAILQRIIREE-FPGSTVITIAHRVPTI--TDSDMVMVLSYG-ELVEYDL 450 (479)
Q Consensus 376 QRlaiARAll~~p~-iliLDE~TSaLD~~te~~i~~~l~~~-~~~~TvI~IaHrl~~i--~~~D~I~vl~~G-~Ive~G~ 450 (479)
||++|||||+.+|+ ||+||||||+||+.+...+++.|+++ .+++|+|+++|+++.. +.+|++++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 99999999999999999999999987 4589999999999963 679999999997 9999998
Q ss_pred hh
Q 011713 451 PS 452 (479)
Q Consensus 451 ~~ 452 (479)
..
T Consensus 988 ~~ 989 (1394)
T TIGR00956 988 LG 989 (1394)
T ss_pred cc
Confidence 64
No 314
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-41 Score=341.92 Aligned_cols=208 Identities=28% Similarity=0.412 Sum_probs=176.9
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHH-Hhccc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL 310 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~-lr~~i 310 (479)
-++++|++.+|++- ++|+|+||++.+||.+|++|+||||||||+|.|+|.|+|++|+|.+||.+..-.++.+ ...-|
T Consensus 8 ll~~~~i~K~FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 8 LLELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred eeeeecceEEcCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 48999999999764 4999999999999999999999999999999999999999999999999999777665 45569
Q ss_pred eEEcCCCccccc-cHHhhcCCCCC-------CCHHHHHHHHHHccHHHHHHhC--CccccccccCCCCCCChhHHHHHHH
Q 011713 311 SIIPQEPTLFRG-SVRTNLDPLGM-------YSDNEIWEAMEKCQLKATISRL--PMLLDSSVSDEGENWSVGQRQLFCL 380 (479)
Q Consensus 311 ~~V~Q~~~lF~g-Ti~eNi~~~~~-------~~~~~i~~a~~~a~l~~~i~~l--p~G~~T~vge~G~~LSgGQrQRlai 380 (479)
+.|.||..|++. ||.|||-++.+ .+..++.+.++.+ +..+ +...+++|+ +||+||||.++|
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~-----l~~lg~~~~~~~~v~----~LsiaqrQ~VeI 156 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAREL-----LARLGLDIDPDTLVG----DLSIAQRQMVEI 156 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHH-----HHHcCCCCChhhhhh----hCCHHHHHHHHH
Confidence 999999999976 99999965432 2334444433332 2222 123677776 599999999999
Q ss_pred HHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecC
Q 011713 381 GRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDL 450 (479)
Q Consensus 381 ARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~ 450 (479)
|||+..+++|||||||||+|+..-.+.+.+.++++. +|.++|+||||+..+.. ||||.||.||+.+..++
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 999999999999999999999988888889998876 68999999999998755 99999999999998776
No 315
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-41 Score=290.41 Aligned_cols=213 Identities=28% Similarity=0.417 Sum_probs=185.0
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCe--ecCCCC----HHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL--DICSMG----LKD 305 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~--~i~~~~----~~~ 305 (479)
+|+++|++|.|+.. .+|.||+|+-+.||++.+.||||+|||||++.|.=+--|.+|+..|.|. |.++.+ ..+
T Consensus 2 sirv~~in~~yg~~--q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~ 79 (242)
T COG4161 2 SIQLNGINCFYGAH--QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD 79 (242)
T ss_pred ceEEcccccccccc--hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHH
Confidence 48999999999654 3899999999999999999999999999999999999999999999875 444332 457
Q ss_pred HhccceEEcCCCccccc-cHHhhcC--CCC--CCCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 306 LRTKLSIIPQEPTLFRG-SVRTNLD--PLG--MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 306 lr~~i~~V~Q~~~lF~g-Ti~eNi~--~~~--~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
+|+.+|+|+|...|++- |+.||+. +.. ..++ .+-.+.++...+.+|.+++| ..|||||+|
T Consensus 80 lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqqq 148 (242)
T COG4161 80 LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQQ 148 (242)
T ss_pred HHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchhh
Confidence 99999999999999876 9999984 211 2232 34556677888888888888 679999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhh
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eL 454 (479)
|+||||||..+|++|++||||++|||+-..++.+.|+++.. |.|-++|||.....+. |.+++.|++|+|||+|+++-.
T Consensus 149 rvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred hHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 99999999999999999999999999999999999998764 8899999999998876 999999999999999998876
Q ss_pred hcc
Q 011713 455 MKT 457 (479)
Q Consensus 455 l~~ 457 (479)
-+.
T Consensus 229 t~p 231 (242)
T COG4161 229 TEP 231 (242)
T ss_pred cCc
Confidence 553
No 316
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.1e-41 Score=356.52 Aligned_cols=212 Identities=22% Similarity=0.335 Sum_probs=171.3
Q ss_pred cEEEEeEEEEeCCC-CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCceEEECCeecCCCCH-HHHhc
Q 011713 232 RIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICSMGL-KDLRT 308 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-~~G~I~i~g~~i~~~~~-~~lr~ 308 (479)
-|+++|++++|+++ ...+|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 49999999999432 23599999999999999999999999999999999999996 89999999999875443 56788
Q ss_pred cceEEcCCC---cccc-ccHHhhcCCCC--C------CCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCCh
Q 011713 309 KLSIIPQEP---TLFR-GSVRTNLDPLG--M------YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSV 372 (479)
Q Consensus 309 ~i~~V~Q~~---~lF~-gTi~eNi~~~~--~------~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSg 372 (479)
+++||||++ .+|. .|+++|+.+.. . ... +++.++++..++.+ .-.+.++ ..|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT------ASPFLPI----GRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC------CCccCcc----ccCCH
Confidence 999999996 4665 59999997521 0 111 22333444433210 0123333 56999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecC
Q 011713 373 GQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDL 450 (479)
Q Consensus 373 GQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~ 450 (479)
|||||++||||++.+|++|||||||++||+.+...+++.++++. ++.|+|+|||+++.+.. ||++++|++|+|+..++
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999888764 47899999999998865 99999999999998776
Q ss_pred hhh
Q 011713 451 PSN 453 (479)
Q Consensus 451 ~~e 453 (479)
-++
T Consensus 487 ~~~ 489 (500)
T TIGR02633 487 NHA 489 (500)
T ss_pred ccc
Confidence 544
No 317
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=6.5e-41 Score=387.54 Aligned_cols=215 Identities=18% Similarity=0.246 Sum_probs=187.2
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccc
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i 310 (479)
.-|+++||+++|++...++|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.++|.++.+ +....|++|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 3599999999997533569999999999999999999999999999999999999999999999999965 456788899
Q ss_pred eEEcCCCccccc-cHHhhcCCC---CCCCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 011713 311 SIIPQEPTLFRG-SVRTNLDPL---GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (479)
Q Consensus 311 ~~V~Q~~~lF~g-Ti~eNi~~~---~~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiAR 382 (479)
||+||++.++.. |++||+.+. ...++ +.+.++++..++.++.++.+ ..||||||||++|||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~-----------~~LSGGqKqRLslA~ 2083 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA-----------GTYSGGNKRKLSTAI 2083 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999998875 999999642 12222 33456677777766554433 579999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhcc
Q 011713 383 VLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 383 All~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
||+.+|+||+|||||++||+.+.+.+.+.|++.. +++|+|++||.++.++. ||||++|++|+++..|+.++|.++
T Consensus 2084 ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2084 ALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 9999999999999999999999999999998863 58999999999999875 999999999999999999999764
No 318
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-41 Score=355.08 Aligned_cols=207 Identities=22% Similarity=0.314 Sum_probs=164.9
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+|+|
T Consensus 2 l~i~~ls~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 68 (530)
T PRK15064 2 LSTANITMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGK 68 (530)
T ss_pred EEEEEEEEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEE
Confidence 789999999963 35999999999999999999999999999999999999999999999972 46999
Q ss_pred EcCCCccccc-cHHhhcCCCCC-----------------CCHH---HHHHHH----------HHccHHHHHHhCCccccc
Q 011713 313 IPQEPTLFRG-SVRTNLDPLGM-----------------YSDN---EIWEAM----------EKCQLKATISRLPMLLDS 361 (479)
Q Consensus 313 V~Q~~~lF~g-Ti~eNi~~~~~-----------------~~~~---~i~~a~----------~~a~l~~~i~~lp~G~~T 361 (479)
|+|++.+|.. |++||+.+... ...+ .+.+.. ....+.+.++.+ |++.
T Consensus 69 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~ 146 (530)
T PRK15064 69 LRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIPE 146 (530)
T ss_pred EeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCCh
Confidence 9999988865 99999864210 0000 000000 001122333333 3322
Q ss_pred cc-cCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEE
Q 011713 362 SV-SDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMV 439 (479)
Q Consensus 362 ~v-ge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~v 439 (479)
.. ......||||||||++|||||+.+|++|||||||++||+++...+.+.|.+ .++|+|+|||+++.+.. ||+|++
T Consensus 147 ~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~~ 224 (530)
T PRK15064 147 EQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMAD 224 (530)
T ss_pred hHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEE
Confidence 11 123468999999999999999999999999999999999999999999975 47999999999998765 999999
Q ss_pred EeCCEE-EEecChhhhhc
Q 011713 440 LSYGEL-VEYDLPSNLMK 456 (479)
Q Consensus 440 l~~G~I-ve~G~~~eLl~ 456 (479)
|++|++ +..|++++.++
T Consensus 225 l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 225 LDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EeCCEEEEecCCHHHHHH
Confidence 999999 47899998875
No 319
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.7e-41 Score=355.78 Aligned_cols=210 Identities=21% Similarity=0.346 Sum_probs=170.6
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCH-HHHhccc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKL 310 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~-~~lr~~i 310 (479)
-|+++||++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|+++
T Consensus 257 ~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 257 RLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred EEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence 489999984 27999999999999999999999999999999999999999999999999987765 3467889
Q ss_pred eEEcCCC---cccc-ccHHhhcCCCC-----C----CCHHHHHHHHHHccHHHHHHhCCcccc-ccccCCCCCCChhHHH
Q 011713 311 SIIPQEP---TLFR-GSVRTNLDPLG-----M----YSDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQRQ 376 (479)
Q Consensus 311 ~~V~Q~~---~lF~-gTi~eNi~~~~-----~----~~~~~i~~a~~~a~l~~~i~~lp~G~~-T~vge~G~~LSgGQrQ 376 (479)
+||||++ .+|. -|++||+.+.. . .+.++.. ..+.++++.+ |+. -........|||||||
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGekq 402 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQ-----QAVSDFIRLF--NIKTPSMEQAIGLLSGGNQQ 402 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHH-----HHHHHHHHhc--CCCCCCccCchhhCCHHHHH
Confidence 9999997 3554 59999996421 0 1111111 1122333332 221 1233444679999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhh
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eL 454 (479)
|++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+.. ||+|++|++|+|+..|+.+++
T Consensus 403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 9999999999999999999999999999999999998874 47899999999998765 999999999999999988775
Q ss_pred h
Q 011713 455 M 455 (479)
Q Consensus 455 l 455 (479)
.
T Consensus 483 ~ 483 (501)
T PRK10762 483 T 483 (501)
T ss_pred C
Confidence 3
No 320
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-41 Score=354.95 Aligned_cols=208 Identities=22% Similarity=0.342 Sum_probs=170.3
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCH-HHHhccc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKL 310 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~-~~lr~~i 310 (479)
.++++|+++. .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. +..|+.+
T Consensus 257 ~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 330 (501)
T PRK11288 257 RLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGI 330 (501)
T ss_pred EEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCC
Confidence 4899999842 38999999999999999999999999999999999999999999999999875543 4567889
Q ss_pred eEEcCCCc---ccc-ccHHhhcCCCCC---------CCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChh
Q 011713 311 SIIPQEPT---LFR-GSVRTNLDPLGM---------YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 373 (479)
Q Consensus 311 ~~V~Q~~~---lF~-gTi~eNi~~~~~---------~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgG 373 (479)
+|+||++. +|. .|+.||+.+... .+. +++.++++..++. ++-.++++ ..||||
T Consensus 331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~----~~LSgG 400 (501)
T PRK11288 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIK------TPSREQLI----MNLSGG 400 (501)
T ss_pred EEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcc------cCCccCcc----ccCCHH
Confidence 99999973 554 699999864311 011 1233333333321 11234443 579999
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecCh
Q 011713 374 QRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLP 451 (479)
Q Consensus 374 QrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~ 451 (479)
||||++||||++.+|++|||||||++||+.+...+.+.|+++. .+.|+|+|||+++.+. .||++++|++|++++.|++
T Consensus 401 q~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~ 480 (501)
T PRK11288 401 NQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAR 480 (501)
T ss_pred HHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcc
Confidence 9999999999999999999999999999999999999998864 4789999999999885 5999999999999999998
Q ss_pred hhhh
Q 011713 452 SNLM 455 (479)
Q Consensus 452 ~eLl 455 (479)
+|..
T Consensus 481 ~~~~ 484 (501)
T PRK11288 481 EQAT 484 (501)
T ss_pred ccCC
Confidence 8765
No 321
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=353.98 Aligned_cols=202 Identities=16% Similarity=0.306 Sum_probs=172.9
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +.++
T Consensus 319 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~ 385 (530)
T PRK15064 319 ALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIG 385 (530)
T ss_pred eEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEE
Confidence 5999999999964 35999999999999999999999999999999999999999999999882 5799
Q ss_pred EEcCCCc--ccc-ccHHhhcCCCC--CCCHHHHHHHHHHccHH-HHHHhCCccccccccCCCCCCChhHHHHHHHHHHhh
Q 011713 312 IIPQEPT--LFR-GSVRTNLDPLG--MYSDNEIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 385 (479)
Q Consensus 312 ~V~Q~~~--lF~-gTi~eNi~~~~--~~~~~~i~~a~~~a~l~-~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll 385 (479)
||+|++. ++. .|+++|+.... ...++++.++++..++. +... .....||||||||++||||++
T Consensus 386 ~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgGq~qrv~la~al~ 454 (530)
T PRK15064 386 YYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIK-----------KSVKVLSGGEKGRMLFGKLMM 454 (530)
T ss_pred EEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhc-----------CcccccCHHHHHHHHHHHHHh
Confidence 9999974 443 59999986321 23455677777777762 3322 223679999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCEEE-EecChhhhhccCc
Q 011713 386 KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGELV-EYDLPSNLMKTNS 459 (479)
Q Consensus 386 ~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Iv-e~G~~~eLl~~~g 459 (479)
++|++|||||||++||+.+...+.+.|+++ +.|+|+|||+++.+.. ||+|++|++|+++ ..|+++++++.+|
T Consensus 455 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~ 528 (530)
T PRK15064 455 QKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQG 528 (530)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHhC
Confidence 999999999999999999999999999886 4699999999998875 9999999999998 7899988876544
No 322
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=4.3e-41 Score=335.06 Aligned_cols=180 Identities=26% Similarity=0.398 Sum_probs=156.5
Q ss_pred EEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccc-cHHhhcCCCC---CCC----H
Q 011713 265 VVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLG---MYS----D 336 (479)
Q Consensus 265 ivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~g-Ti~eNi~~~~---~~~----~ 336 (479)
|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .+++++||+|++.+|.. |++||+.+.. ..+ +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999987664 46789999999999976 9999997531 122 2
Q ss_pred HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC
Q 011713 337 NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF 416 (479)
Q Consensus 337 ~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~ 416 (479)
+++.++++..++.++..+.| ..||||||||++|||||+++|++||||||||+||+.+...+.+.|++..
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~-----------~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKP-----------HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcCCcchhcCCh-----------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 45667777777766555444 5799999999999999999999999999999999999999999998865
Q ss_pred C--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhcc
Q 011713 417 P--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 417 ~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++++...
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 3 789999999999865 5999999999999999999999874
No 323
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.3e-40 Score=355.30 Aligned_cols=208 Identities=24% Similarity=0.346 Sum_probs=166.8
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
-|+++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ +.+|+
T Consensus 6 ~l~i~~l~~~y~~~-~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~ 73 (556)
T PRK11819 6 IYTMNRVSKVVPPK-KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVG 73 (556)
T ss_pred EEEEeeEEEEeCCC-CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 48999999999622 4599999999999999999999999999999999999999999999975 24799
Q ss_pred EEcCCCccccc-cHHhhcCCCC-C----------------CC----------HHHHHHHHHHcc-------HHHHHHhCC
Q 011713 312 IIPQEPTLFRG-SVRTNLDPLG-M----------------YS----------DNEIWEAMEKCQ-------LKATISRLP 356 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~~-~----------------~~----------~~~i~~a~~~a~-------l~~~i~~lp 356 (479)
||||+|.+|+. |++||+.+.. . .. .+++.++++.++ +.+.++.+
T Consensus 74 ~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 152 (556)
T PRK11819 74 YLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL- 152 (556)
T ss_pred EEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC-
Confidence 99999999876 9999996421 0 00 011122222211 12222222
Q ss_pred ccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CC
Q 011713 357 MLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SD 435 (479)
Q Consensus 357 ~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D 435 (479)
|++ ........||||||||++||||++.+|++|||||||++||+.+...+.+.|++.. .|+|+|||+++.+.. ||
T Consensus 153 -gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~d 228 (556)
T PRK11819 153 -RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVAG 228 (556)
T ss_pred -CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcC
Confidence 221 1233345799999999999999999999999999999999999999999998863 699999999998876 89
Q ss_pred EEEEEeCCEEE-EecChhhhhc
Q 011713 436 MVMVLSYGELV-EYDLPSNLMK 456 (479)
Q Consensus 436 ~I~vl~~G~Iv-e~G~~~eLl~ 456 (479)
+|++|++|+++ ..|++++.++
T Consensus 229 ~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 229 WILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred eEEEEeCCEEEEecCCHHHHHH
Confidence 99999999986 7899998765
No 324
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.5e-41 Score=324.04 Aligned_cols=200 Identities=24% Similarity=0.355 Sum_probs=159.0
Q ss_pred EeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEE-----------ECCeecCCCCHH
Q 011713 236 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL-----------IDGLDICSMGLK 304 (479)
Q Consensus 236 ~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~-----------i~g~~i~~~~~~ 304 (479)
.||+|+|++. .++|+|+|+ +++||++||+||||||||||+++|+|+++|++|+|. ++|.++.+...+
T Consensus 4 ~~~~~~y~~~-~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPN-SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCc-chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 4688999643 359999994 999999999999999999999999999999999996 889988776443
Q ss_pred HHhc--cceEEcCCCccccccHHhhcCC--CCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 011713 305 DLRT--KLSIIPQEPTLFRGSVRTNLDP--LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 380 (479)
Q Consensus 305 ~lr~--~i~~V~Q~~~lF~gTi~eNi~~--~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlai 380 (479)
..|. .+++++|++.++..++.+|+.. .....++++.++++..++.+. +......||||||||++|
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~l 150 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHV-----------LDRNIDQLSGGELQRVAI 150 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHH
Confidence 3333 3688888777665444444421 111123556666666665433 334557899999999999
Q ss_pred HHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEccCchhhhc-CCEEEEEeCCEEEEec
Q 011713 381 GRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITD-SDMVMVLSYGELVEYD 449 (479)
Q Consensus 381 ARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G 449 (479)
|||++++|+++||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++| +|++++.|
T Consensus 151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE-CCCCCcce
Confidence 9999999999999999999999999999999988754 7999999999999885 9999999 56676644
No 325
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2.3e-40 Score=291.38 Aligned_cols=143 Identities=32% Similarity=0.529 Sum_probs=134.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
++++|++++|++ .++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.+||. ..++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 67 (144)
T cd03221 1 IELENLSKTYGG--KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGY 67 (144)
T ss_pred CEEEEEEEEECC--ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEE
Confidence 478999999964 35999999999999999999999999999999999999999999999994 47999
Q ss_pred EcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEE
Q 011713 313 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILI 392 (479)
Q Consensus 313 V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~ili 392 (479)
++| ||+||+||++||||++++|+++|
T Consensus 68 ~~~------------------------------------------------------lS~G~~~rv~laral~~~p~ill 93 (144)
T cd03221 68 FEQ------------------------------------------------------LSGGEKMRLALAKLLLENPNLLL 93 (144)
T ss_pred Ecc------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 999 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCE
Q 011713 393 LDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGE 444 (479)
Q Consensus 393 LDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~ 444 (479)
|||||++||+.+...+.+.++++ ++|+|++||+++.+.. ||++++|++|+
T Consensus 94 lDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 94 LDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999886 5799999999999865 89999999986
No 326
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.6e-40 Score=354.51 Aligned_cols=208 Identities=24% Similarity=0.335 Sum_probs=171.3
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
-|+++||+++|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..|+
T Consensus 4 ~i~~~nls~~~~~~-~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~ 71 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVG 71 (552)
T ss_pred EEEEeeEEEecCCC-CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 48999999999633 4599999999999999999999999999999999999999999999975 24799
Q ss_pred EEcCCCccccc-cHHhhcCCCC-C-----------------C-C--------HHHHHHHHHHccHHH-------HHHhCC
Q 011713 312 IIPQEPTLFRG-SVRTNLDPLG-M-----------------Y-S--------DNEIWEAMEKCQLKA-------TISRLP 356 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~~-~-----------------~-~--------~~~i~~a~~~a~l~~-------~i~~lp 356 (479)
||+|+|.+|+. |++||+.++. . . . .+++.++++.+++++ .+..+
T Consensus 72 ~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 150 (552)
T TIGR03719 72 YLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL- 150 (552)
T ss_pred EEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC-
Confidence 99999999865 9999996421 0 0 1 123555555555432 23332
Q ss_pred ccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CC
Q 011713 357 MLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SD 435 (479)
Q Consensus 357 ~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D 435 (479)
|++ ........||||||||++||||++.+|++|||||||++||+.+...+.+.|++. ++|+|+|||+++.+.. ||
T Consensus 151 -~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~d 226 (552)
T TIGR03719 151 -RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVAG 226 (552)
T ss_pred -CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcC
Confidence 232 123345689999999999999999999999999999999999999999999876 3699999999999876 89
Q ss_pred EEEEEeCCEEE-EecChhhhhc
Q 011713 436 MVMVLSYGELV-EYDLPSNLMK 456 (479)
Q Consensus 436 ~I~vl~~G~Iv-e~G~~~eLl~ 456 (479)
+|++|++|+++ ..|++++.++
T Consensus 227 ~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 227 WILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred eEEEEECCEEEEecCCHHHHHH
Confidence 99999999976 7799998765
No 327
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.4e-40 Score=318.49 Aligned_cols=192 Identities=25% Similarity=0.322 Sum_probs=157.5
Q ss_pred EEeCCCCCceeeeeeEEee-----CCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEc
Q 011713 240 VRYRPNTPLVLKGITCTFK-----EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP 314 (479)
Q Consensus 240 f~Y~~~~~~vL~~isl~i~-----~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~ 314 (479)
|+|++..+ .|+|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .|+|+|
T Consensus 1 ~~y~~~~~-~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~ 67 (246)
T cd03237 1 YTYPTMKK-TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKP 67 (246)
T ss_pred CCCccccc-ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEec
Confidence 67875544 8888988887 69999999999999999999999999999999999984 699999
Q ss_pred CCCc-cccccHHhhcCCCC-CC--CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCE
Q 011713 315 QEPT-LFRGSVRTNLDPLG-MY--SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 390 (479)
Q Consensus 315 Q~~~-lF~gTi~eNi~~~~-~~--~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~i 390 (479)
|++. .|..|++||+.... .. ..+...++++..++.+... .....||||||||++|||||+++|++
T Consensus 68 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~qrv~iaraL~~~p~l 136 (246)
T cd03237 68 QYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILD-----------REVPELSGGELQRVAIAACLSKDADI 136 (246)
T ss_pred ccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9997 47889999996321 11 1233455666666554332 33457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhc-CCEEEEEeCCEEE--EecChhhhh
Q 011713 391 LILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGELV--EYDLPSNLM 455 (479)
Q Consensus 391 liLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Iv--e~G~~~eLl 455 (479)
+||||||++||+.+...+.+.|+++. .++|+|+|||++..+.. ||+|++|+++..+ ..+++.++.
T Consensus 137 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 137 YLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 99999999999999999999998875 37999999999999875 9999999776544 456666654
No 328
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=2.7e-40 Score=310.31 Aligned_cols=188 Identities=20% Similarity=0.243 Sum_probs=155.0
Q ss_pred eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEE-ECCeecCCCCHHHHhccceEEcCCCccccc-cHHh
Q 011713 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL-IDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRT 326 (479)
Q Consensus 249 vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~-i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~g-Ti~e 326 (479)
+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|++ |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 79999999999999999999999999999999999999999997 777543 13467788876 9999
Q ss_pred hcCCC---CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHH
Q 011713 327 NLDPL---GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSA 403 (479)
Q Consensus 327 Ni~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~ 403 (479)
|+.+. ...+.+++.+.+. ....++..++++++ .||||||||++||||++++|+++||||||+++|+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCY------QLTQLEQCYTDRVS----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHH------HHhChhHHhhchHh----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 99642 1234444333221 12334555666664 49999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhccCc
Q 011713 404 TDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMKTNS 459 (479)
Q Consensus 404 te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~~g 459 (479)
+.+.+.+.+.+..+++|+|++||+++.+. .||+|++|++|++++.|+-+++.+..+
T Consensus 139 ~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 195 (213)
T PRK15177 139 TQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATALFE 195 (213)
T ss_pred HHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHHHH
Confidence 99999998876666789999999999986 699999999999999999888764433
No 329
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=4.9e-38 Score=315.74 Aligned_cols=414 Identities=19% Similarity=0.179 Sum_probs=275.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchH
Q 011713 14 TRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIV-AIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV 92 (479)
Q Consensus 14 ~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (479)
.|+++|++..-..+......++.+.+.++.+..-++....+...+ ++.-.++...+.+...+..-+..-.+.+..+++-
T Consensus 186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR 265 (659)
T KOG0060|consen 186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR 265 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence 589999988876666666666666655555544444333222222 2222222223333333333333333333444444
Q ss_pred HHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hC----
Q 011713 93 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVL------LP---- 162 (479)
Q Consensus 93 ~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---- 162 (479)
-.-.+...+.+.|--|+.++.......+.++...+..........|+.++.+++. ....++.++ ..
T Consensus 266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~----Ylg~ilsy~vi~~p~Fs~h~y 341 (659)
T KOG0060|consen 266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFD----YLGGILSYVVIAIPFFSGHVY 341 (659)
T ss_pred hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhheeeEEeeeeeccccc
Confidence 4455667788899999988766655555555544443333444445544333322 111111110 01
Q ss_pred CcccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--------------C-CCCc-cCCC
Q 011713 163 GKHLPGFVGLSL----SYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPE--------------P-PAII-EETK 222 (479)
Q Consensus 163 ~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e--------------~-~~~~-~~~~ 222 (479)
+.+++..+...+ .+...+...+..+......+..-..-..||.++++.-.+ . +... ....
T Consensus 342 ~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~ 421 (659)
T KOG0060|consen 342 DDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLP 421 (659)
T ss_pred CCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCC
Confidence 233333222211 122233344444444444555555667788777642100 0 0000 0000
Q ss_pred C--CCCCCCCccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCC
Q 011713 223 P--PASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 300 (479)
Q Consensus 223 ~--~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~ 300 (479)
+ ...+|....|+|++|++.-|.+.+.+.+|+||+|+.|+.+.|.||||||||+|++.|.|+|+..+|++.--...-.
T Consensus 422 ~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~- 500 (659)
T KOG0060|consen 422 PGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP- 500 (659)
T ss_pred CCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC-
Confidence 1 1123445679999999998876665778899999999999999999999999999999999999999985332111
Q ss_pred CCHHHHhccceEEcCCCccccccHHhhcCCC--------CCCCHHHHHHHHHHccHHHHHHhCCcccccccc-CCCCCCC
Q 011713 301 MGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL--------GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVS-DEGENWS 371 (479)
Q Consensus 301 ~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~--------~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vg-e~G~~LS 371 (479)
+.+-||||.|+.-.||+||-+.+- +.++|++|.+.++.+++.+.+++ .+|+|+++- |-..-||
T Consensus 501 -------~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS 572 (659)
T KOG0060|consen 501 -------KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLS 572 (659)
T ss_pred -------CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcC
Confidence 458999999999999999998531 13789999999999999987776 479998775 6678999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeC
Q 011713 372 VGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSY 442 (479)
Q Consensus 372 gGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~ 442 (479)
+||+||+|.||.++.+|++-||||+|||+|.+.|..+.+.+++. +.|.|.|.||.+.-+.-|.++-|+.
T Consensus 573 ~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 573 PGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecC
Confidence 99999999999999999999999999999999999999999885 8999999999999999999999986
No 330
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.2e-40 Score=350.28 Aligned_cols=211 Identities=22% Similarity=0.354 Sum_probs=170.8
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHH-Hhccc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL 310 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~-lr~~i 310 (479)
-|+++|+++ .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... +|+.|
T Consensus 268 ~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 268 VLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred eEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 489999983 1699999999999999999999999999999999999999999999999998776654 46789
Q ss_pred eEEcCCC---ccccc-cHHhhcCCC-----CC-CCHHHHHHHHHHccHHHHHHhCCcccc-ccccCCCCCCChhHHHHHH
Q 011713 311 SIIPQEP---TLFRG-SVRTNLDPL-----GM-YSDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 311 ~~V~Q~~---~lF~g-Ti~eNi~~~-----~~-~~~~~i~~a~~~a~l~~~i~~lp~G~~-T~vge~G~~LSgGQrQRla 379 (479)
+||||++ .+|.. |+.+|+... .. ....+.+ ..+.+++..+ |+. .........||||||||++
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl~ 413 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN-----AVLERYRRAL--NIKFNHAEQAARTLSGGNQQKVL 413 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH-----HHHHHHHHHc--CCCCCCccCccccCCcHHHHHHH
Confidence 9999986 36654 999998421 00 0111111 1122334333 232 2233334679999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhc
Q 011713 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 380 iARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|+..|+.+++..
T Consensus 414 la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 414 IAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred HHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence 9999999999999999999999999999999998864 47999999999999865 99999999999999999887753
No 331
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=4.8e-40 Score=346.64 Aligned_cols=205 Identities=21% Similarity=0.290 Sum_probs=166.3
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCceEEECCeecCC-CCHHHHhcc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICS-MGLKDLRTK 309 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-~~G~I~i~g~~i~~-~~~~~lr~~ 309 (479)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. .+...+|++
T Consensus 260 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 260 RIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred eEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 5999999999964 3499999999999999999999999999999999999876 69999999987632 233457889
Q ss_pred ceEEcCCCcccc---ccHHhhcCCC--C------CCC---HHHHHHHHHHccHHH-HHHhCCccccccccCCCCCCChhH
Q 011713 310 LSIIPQEPTLFR---GSVRTNLDPL--G------MYS---DNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEGENWSVGQ 374 (479)
Q Consensus 310 i~~V~Q~~~lF~---gTi~eNi~~~--~------~~~---~~~i~~a~~~a~l~~-~i~~lp~G~~T~vge~G~~LSgGQ 374 (479)
|+|++|++.++. .|+++++... . ... ++++.++++..++.+ .. +. ....|||||
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~~LSgGq 406 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA-------DA----PFHSLSWGQ 406 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc-------cC----chhhCCHHH
Confidence 999999987643 4677776321 0 011 234556666666543 22 22 235799999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC-C-cEEEEEccCchhhhc--CCEEEEEeCCEEEEec
Q 011713 375 RQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-G-STVITIAHRVPTITD--SDMVMVLSYGELVEYD 449 (479)
Q Consensus 375 rQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~-~-~TvI~IaHrl~~i~~--~D~I~vl~~G~Ive~G 449 (479)
|||++||||++++|++|||||||++||+.+...+.+.|+++.+ + .|+|+|||+++.+.. ||++++|++|+|++.-
T Consensus 407 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 407 QRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999999999999999999999988753 3 469999999999864 8999999999998753
No 332
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-40 Score=303.17 Aligned_cols=196 Identities=22% Similarity=0.329 Sum_probs=177.5
Q ss_pred eeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCC----CCHHHHhccceEEcCCCccccc-cHHh
Q 011713 252 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS----MGLKDLRTKLSIIPQEPTLFRG-SVRT 326 (479)
Q Consensus 252 ~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~----~~~~~lr~~i~~V~Q~~~lF~g-Ti~e 326 (479)
++||+.+.-..+||-|+||||||||+|++.|+..|++|+|.+||.-+.+ +...--+++||||+||.-||.- |++-
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 5889998889999999999999999999999999999999999986643 4555668899999999999976 9999
Q ss_pred hcCCCCC-CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHH
Q 011713 327 NLDPLGM-YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATD 405 (479)
Q Consensus 327 Ni~~~~~-~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te 405 (479)
||+++.. .+.++..+++...|+.+..+++| ..||||||||+||+|||+.+|++|++|||.|+||-...
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 9998753 45778899999999999999999 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCC--CcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhhccC
Q 011713 406 AILQRIIREEFP--GSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 406 ~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
++++-.++++.+ +--++.|||.+..+ +.||++++|++|++...|.-+|.++..
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 999999988765 56899999999876 559999999999999999999998654
No 333
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-40 Score=344.69 Aligned_cols=211 Identities=19% Similarity=0.318 Sum_probs=167.6
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHH-HHhccc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKL 310 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~-~lr~~i 310 (479)
-|+++|++++| +++|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.++|.++...+.. .+|+.+
T Consensus 250 ~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 250 ILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred EEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence 58999999975 2499999999999999999999999999999999999999999999999999877654 357789
Q ss_pred eEEcCCCc---ccc-ccHHhhcCC-----C-C--C-CCHHHHHHHHHHccHHHHHHhCCccccc-cccCCCCCCChhHHH
Q 011713 311 SIIPQEPT---LFR-GSVRTNLDP-----L-G--M-YSDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVGQRQ 376 (479)
Q Consensus 311 ~~V~Q~~~---lF~-gTi~eNi~~-----~-~--~-~~~~~i~~a~~~a~l~~~i~~lp~G~~T-~vge~G~~LSgGQrQ 376 (479)
+|+||++. +|. .|+.+|... . . . .+..+..+ .+.++++.+ |+.. ........|||||||
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGq~q 398 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSM--RVKTPGHRTQIGSLSGGNQQ 398 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhc--CccCCCcccccccCCcHHHH
Confidence 99999963 566 477766321 1 1 1 12111111 122334443 1210 123334579999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhh
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSN 453 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~e 453 (479)
|++||||++++|+||||||||++||+.+...+.+.|+++. +++|+|+|||+++.+. .||++++|++|+++..++.++
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 9999999999999999999999999999999999998764 4899999999999885 599999999999998886643
No 334
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-39 Score=286.67 Aligned_cols=202 Identities=24% Similarity=0.326 Sum_probs=171.2
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
+..+++|.+|++...++|+|+|++|.+||.++++||||||||||+|+++||.+|..|+|.+||.+|..-.. .=|+
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----ergv 78 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERGV 78 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----ccee
Confidence 56788999998765669999999999999999999999999999999999999999999999999876543 3589
Q ss_pred EcCCCccccc-cHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 313 IPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 313 V~Q~~~lF~g-Ti~eNi~~~~---~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
|+|++-|++= |+.||+.++- ..+. +...+.+..+|+.++=.+.+ ..||||||||+.|||||
T Consensus 79 VFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----------~qLSGGmrQRvGiARAL 147 (259)
T COG4525 79 VFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYI-----------WQLSGGMRQRVGIARAL 147 (259)
T ss_pred EeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccce-----------EeecchHHHHHHHHHHh
Confidence 9999999985 9999997641 2222 33455666777766544333 57999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhh-hcCCEEEEEeC--CEEEEecC
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTI-TDSDMVMVLSY--GELVEYDL 450 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~~D~I~vl~~--G~Ive~G~ 450 (479)
.-+|+.|+||||.+|||.-|.+.+++.+-++. .++-+++|||..+.. --|++++||.- |+|++.=+
T Consensus 148 a~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~ 218 (259)
T COG4525 148 AVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLP 218 (259)
T ss_pred hcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecC
Confidence 99999999999999999999999999987754 489999999999875 45999999975 89997643
No 335
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3.3e-39 Score=320.71 Aligned_cols=206 Identities=28% Similarity=0.398 Sum_probs=173.8
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCH-HHHhccc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKL 310 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~-~~lr~~i 310 (479)
.+++++++.+|++ -.+++||||++++||..||.|+||+|||||+++|.|+|+|++|+|++||++++=-++ +..|.-|
T Consensus 4 ~l~~~~itK~f~~--~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 4 ALEMRGITKRFPG--VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred eEEEeccEEEcCC--EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 4899999999983 348999999999999999999999999999999999999999999999999986555 4678889
Q ss_pred eEEcCCCccccc-cHHhhcCCCCCC------CH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHH
Q 011713 311 SIIPQEPTLFRG-SVRTNLDPLGMY------SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 311 ~~V~Q~~~lF~g-Ti~eNi~~~~~~------~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRla 379 (479)
|+|.|.+.|++. |+.|||.++.+. +. +++.+.++..| ||--.|..| ..||-|||||+.
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yG-------l~vdp~~~V----~dLsVG~qQRVE 150 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYG-------LPVDPDAKV----ADLSVGEQQRVE 150 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhC-------CCCCcccee----ecCCcchhHHHH
Confidence 999999999987 999999765422 22 23333333322 233344444 469999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecC
Q 011713 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDL 450 (479)
Q Consensus 380 iARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~ 450 (479)
|-+||+++|++||||||||-|-|.--+.+.+.++++. .|+|+|+|||++..++. |||+-||.+|+++..-+
T Consensus 151 IlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 151 ILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999999998888889998865 59999999999998876 99999999999875443
No 336
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-40 Score=288.34 Aligned_cols=219 Identities=28% Similarity=0.436 Sum_probs=189.4
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++||+.+|.. +.+|+|+|++|++|..++|+||+|+|||||+.+++|+.++++|+|.+||.++.+++-++|-+.+++
T Consensus 2 I~i~nv~K~y~~--~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 2 ITIENVSKSYGT--KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred eeehhhhHhhCC--EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 789999999964 459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCcccc-ccHHhhcCCCC-CC--------CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 011713 313 IPQEPTLFR-GSVRTNLDPLG-MY--------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (479)
Q Consensus 313 V~Q~~~lF~-gTi~eNi~~~~-~~--------~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiAR 382 (479)
+-|+.++-. -||||=+.|++ ++ +...+.+|++-.+|.+.-.+. =..||||||||--||.
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dry-----------Ld~LSGGQrQRAfIAM 148 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRY-----------LDELSGGQRQRAFIAM 148 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHh-----------HHhcccchhhhhhhhe
Confidence 999999755 49999887653 22 233466777776665432221 1469999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhccCc
Q 011713 383 VLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKTNS 459 (479)
Q Consensus 383 All~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~~g 459 (479)
.+.++.+-++||||..+||-.....+++.++++.. +||+++|-|+...... +|.|+-|++|+++.+|+++|+++.+
T Consensus 149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~- 227 (252)
T COG4604 149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPE- 227 (252)
T ss_pred eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHH-
Confidence 99999999999999999999999999999988653 8999999999998876 8999999999999999999999753
Q ss_pred hHHHHH
Q 011713 460 AFSKLV 465 (479)
Q Consensus 460 ~y~~l~ 465 (479)
...++|
T Consensus 228 ~L~eiy 233 (252)
T COG4604 228 ILSEIY 233 (252)
T ss_pred HHHHHh
Confidence 234444
No 337
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-38 Score=285.40 Aligned_cols=155 Identities=41% Similarity=0.632 Sum_probs=145.3
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEE
Q 011713 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (479)
Q Consensus 234 ~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V 313 (479)
+++|++|+|++. ++|+++||+|++|+.++|+|+||||||||+++|+|+++|++|+|+++|.++.+.....+++.++|+
T Consensus 1 ~~~~~~~~~~~~--~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 1 EIENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred CeEEEEEEeCCe--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 368999999643 599999999999999999999999999999999999999999999999999888788889999999
Q ss_pred cCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEE
Q 011713 314 PQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILIL 393 (479)
Q Consensus 314 ~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliL 393 (479)
+| |||||+||++||||++.+|+++||
T Consensus 79 ~q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 79 PQ------------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred ee------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEccCchhhhc-CCEEEEEeCCE
Q 011713 394 DEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITD-SDMVMVLSYGE 444 (479)
Q Consensus 394 DE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaHrl~~i~~-~D~I~vl~~G~ 444 (479)
||||++||.++...+.+.+.+..+ ++|++++||+++.+.. ||++++|++|+
T Consensus 105 DEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 105 DEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999999988654 5899999999999988 59999999985
No 338
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2e-38 Score=343.69 Aligned_cols=197 Identities=18% Similarity=0.273 Sum_probs=164.6
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
-|+++||+|+|++. +++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++ +.+|+
T Consensus 508 ~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~ig 575 (718)
T PLN03073 508 IISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRMA 575 (718)
T ss_pred eEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeEE
Confidence 59999999999643 3599999999999999999999999999999999999999999999876 24799
Q ss_pred EEcCCCccccccHHhhcC--C---CCCCCHHHHHHHHHHccHHH-HHHhCCccccccccCCCCCCChhHHHHHHHHHHhh
Q 011713 312 IIPQEPTLFRGSVRTNLD--P---LGMYSDNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 385 (479)
Q Consensus 312 ~V~Q~~~lF~gTi~eNi~--~---~~~~~~~~i~~a~~~a~l~~-~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll 385 (479)
|++|++. ...++.+|.. + ....+++++.++++..++.+ .... ....||||||||++||||++
T Consensus 576 yv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~-----------~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 576 VFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ-----------PMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcC-----------CccccCHHHHHHHHHHHHHh
Confidence 9999873 2234555532 1 12345778888888888753 2222 23679999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCEEE-EecChhhh
Q 011713 386 KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGELV-EYDLPSNL 454 (479)
Q Consensus 386 ~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Iv-e~G~~~eL 454 (479)
++|++|||||||++||+.+...+.+.+.+. + .|+|+|||++..+.. ||+|++|++|+++ ..|++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999998999988875 3 599999999999875 9999999999998 57877663
No 339
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.2e-38 Score=288.56 Aligned_cols=145 Identities=27% Similarity=0.335 Sum_probs=131.7
Q ss_pred EeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcC
Q 011713 236 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ 315 (479)
Q Consensus 236 ~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q 315 (479)
.||+++|++ .++++|+ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ++|++|
T Consensus 4 ~~l~~~~~~--~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q 68 (177)
T cd03222 4 PDCVKRYGV--FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQ 68 (177)
T ss_pred CCeEEEECC--EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEcc
Confidence 588999964 3589984 9999999999999999999999999999999999999999953 788988
Q ss_pred CCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeC
Q 011713 316 EPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDE 395 (479)
Q Consensus 316 ~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE 395 (479)
++. ||||||||++||||++.+|+++||||
T Consensus 69 ~~~---------------------------------------------------LSgGq~qrv~laral~~~p~lllLDE 97 (177)
T cd03222 69 YID---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDE 97 (177)
T ss_pred cCC---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 653 99999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHC-C-CcEEEEEccCchhhhc-CCEEEEEeCCEEE
Q 011713 396 ATASIDSATDAILQRIIREEF-P-GSTVITIAHRVPTITD-SDMVMVLSYGELV 446 (479)
Q Consensus 396 ~TSaLD~~te~~i~~~l~~~~-~-~~TvI~IaHrl~~i~~-~D~I~vl~~G~Iv 446 (479)
||++||+.+.+.+.+.+++.. + ++|+|+|||+++.+.. ||+|++|+++-.+
T Consensus 98 Pts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 98 PSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 999999999999999998864 3 3899999999999874 9999999988665
No 340
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.6e-38 Score=336.49 Aligned_cols=201 Identities=20% Similarity=0.271 Sum_probs=164.5
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++ ++ .|+
T Consensus 324 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~i~ 390 (556)
T PRK11819 324 VIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------KLA 390 (556)
T ss_pred EEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------EEE
Confidence 5999999999964 3599999999999999999999999999999999999999999999954 21 599
Q ss_pred EEcCCC-cccc-ccHHhhcCCCC---C--CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 312 IIPQEP-TLFR-GSVRTNLDPLG---M--YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 312 ~V~Q~~-~lF~-gTi~eNi~~~~---~--~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
||||++ .++. -|++||+.+.. . ..+++..++++..++.+. ..+.. ...||||||||++||||+
T Consensus 391 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~----~~~LSgG~~qrv~la~al 460 (556)
T PRK11819 391 YVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG------DQQKK----VGVLSGGERNRLHLAKTL 460 (556)
T ss_pred EEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh------HhcCc----hhhCCHHHHHHHHHHHHH
Confidence 999997 5665 49999996421 1 123334445555544211 12233 357999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeC-CEEEE-ecChhhhhcc
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSY-GELVE-YDLPSNLMKT 457 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~-G~Ive-~G~~~eLl~~ 457 (479)
+.+|++|||||||++||+.+...+.+.|+++ + .|+|+|||+++.+.. ||+|++|++ |++.+ .|+++++++.
T Consensus 461 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 461 KQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9999999999999999999999999999886 3 499999999998765 999999996 88874 7888877654
No 341
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=6e-38 Score=334.71 Aligned_cols=200 Identities=21% Similarity=0.266 Sum_probs=162.5
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ ++ .|+
T Consensus 322 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i~ 388 (552)
T TIGR03719 322 VIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KLA 388 (552)
T ss_pred EEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EEE
Confidence 5999999999964 3599999999999999999999999999999999999999999999955 21 699
Q ss_pred EEcCCCc-ccc-ccHHhhcCCCC---CCC--HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 312 IIPQEPT-LFR-GSVRTNLDPLG---MYS--DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 312 ~V~Q~~~-lF~-gTi~eNi~~~~---~~~--~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
||||++. ++. -|++||+.+.. ... +.+..++++..++.+. -.+. ....||||||||++||||+
T Consensus 389 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~----~~~~LSgGe~qrv~la~al 458 (552)
T TIGR03719 389 YVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGS------DQQK----KVGQLSGGERNRVHLAKTL 458 (552)
T ss_pred EEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChh------HhcC----chhhCCHHHHHHHHHHHHH
Confidence 9999973 665 59999996431 111 2233444444444211 0122 2357999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeC-CEEE-EecChhhhhc
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSY-GELV-EYDLPSNLMK 456 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~-G~Iv-e~G~~~eLl~ 456 (479)
+.+|++|||||||++||+.+...+.+.|+++. .|+|+|||++..+.. ||+|++|++ |+++ ..|+++++.+
T Consensus 459 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 459 KSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 99999999999999999999999999999873 499999999998865 999999997 5876 4577766543
No 342
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-38 Score=339.53 Aligned_cols=198 Identities=20% Similarity=0.321 Sum_probs=165.8
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
-|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. .+++
T Consensus 312 ~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 378 (638)
T PRK10636 312 LLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLG 378 (638)
T ss_pred eEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEE
Confidence 5999999999964 45999999999999999999999999999999999999999999999741 2699
Q ss_pred EEcCCC--cccc-ccHHhhcCC-CCCCCHHHHHHHHHHccHH-HHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc
Q 011713 312 IIPQEP--TLFR-GSVRTNLDP-LGMYSDNEIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (479)
Q Consensus 312 ~V~Q~~--~lF~-gTi~eNi~~-~~~~~~~~i~~a~~~a~l~-~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~ 386 (479)
|++|++ .++. .|+.+++.. .....++++.++++..++. +.. +.++ ..||||||||++||||+++
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~-------~~~~----~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKV-------TEET----RRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHh-------cCch----hhCCHHHHHHHHHHHHHhc
Confidence 999985 3443 378888742 2223345666666666653 122 2233 5799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCEEE-EecChhhhh
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGELV-EYDLPSNLM 455 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Iv-e~G~~~eLl 455 (479)
+|++|||||||++||+.+...+.+.|+++ . .|+|+|||++..+.. ||+|++|++|+++ ..|++++..
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 99999999999999999999999999987 3 599999999998865 9999999999997 689988864
No 343
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=7.1e-38 Score=360.44 Aligned_cols=211 Identities=23% Similarity=0.295 Sum_probs=177.9
Q ss_pred cEEEEeEEEEeCC-----------CCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCceEEECCeec
Q 011713 232 RIELEDLKVRYRP-----------NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDI 298 (479)
Q Consensus 232 ~I~~~~vsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p--~~G~I~i~g~~i 298 (479)
.+.|+||++..+. +...+|+|||++++||+.+||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 6899999999842 223699999999999999999999999999999999999874 789999999886
Q ss_pred CCCCHHHHhccceEEcCCCccccc-cHHhhcCCC------CCCCHH----HHHHHHHHccHHHHHHhCCccccccccCCC
Q 011713 299 CSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPL------GMYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEG 367 (479)
Q Consensus 299 ~~~~~~~lr~~i~~V~Q~~~lF~g-Ti~eNi~~~------~~~~~~----~i~~a~~~a~l~~~i~~lp~G~~T~vge~G 367 (479)
+ ...+|+.+|||+|++.++.. |++|||.+. .+.+.+ .+.++++..++.+. .|+.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 4 34577889999999887764 999999642 122322 35667777776542 477787655
Q ss_pred -CCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchh--hhcCCEEEEEeC-
Q 011713 368 -ENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPT--ITDSDMVMVLSY- 442 (479)
Q Consensus 368 -~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~--i~~~D~I~vl~~- 442 (479)
..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|+++. +++|+|+++|+++. .+.||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6899999999999999999999999999999999999999999999875 47999999999984 577999999996
Q ss_pred CEEEEecChh
Q 011713 443 GELVEYDLPS 452 (479)
Q Consensus 443 G~Ive~G~~~ 452 (479)
|+++..|+..
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999853
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=7.4e-38 Score=338.60 Aligned_cols=199 Identities=21% Similarity=0.339 Sum_probs=163.5
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
-|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+ |.++ .|+
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 4899999999964 35999999999999999999999999999999999999999999999 4332 599
Q ss_pred EEcCCC-ccccc-cHHhhcCCCC-CC--C--HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 312 IIPQEP-TLFRG-SVRTNLDPLG-MY--S--DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 312 ~V~Q~~-~lF~g-Ti~eNi~~~~-~~--~--~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
|++|++ .++.. |+.||+.... .. + ..++.+.++..++.. +..++++ ..||||||||++||||+
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~LSgGekqRl~la~al 455 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHP------KRAMTPV----KALSGGERNRLLLARLF 455 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCH------HHHhChh----hhCCHHHHHHHHHHHHH
Confidence 999986 46655 9999996421 11 1 334444455444421 1133444 46999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEe-CCEEEE-ecChhhhh
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLS-YGELVE-YDLPSNLM 455 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~-~G~Ive-~G~~~eLl 455 (479)
+.+|++|||||||++||+.+...+.+.++++ +.|+|+|||++..+.. ||+|++|+ +|+|++ .|++++.+
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 9999999999999999999999999999876 4699999999998865 99999998 899986 67877764
No 345
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=9e-38 Score=301.67 Aligned_cols=223 Identities=25% Similarity=0.424 Sum_probs=187.5
Q ss_pred cEEEEeEEEEeC--CCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCceEEECCeecCCCCHH
Q 011713 232 RIELEDLKVRYR--PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSMGLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~--~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-----~~G~I~i~g~~i~~~~~~ 304 (479)
-++++|+|.+|. +....+++||||.|++||++|+||+||||||--++.++|+++- .+|+|.++|.|+-..+.+
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 378899988874 3345699999999999999999999999999999999999864 479999999999999999
Q ss_pred HHhc----cceEEcCCCcc-cc--ccHHhh----cCCC----CCCCHHHHHHHHHHccHHH---HHHhCCccccccccCC
Q 011713 305 DLRT----KLSIIPQEPTL-FR--GSVRTN----LDPL----GMYSDNEIWEAMEKCQLKA---TISRLPMLLDSSVSDE 366 (479)
Q Consensus 305 ~lr~----~i~~V~Q~~~l-F~--gTi~eN----i~~~----~~~~~~~i~~a~~~a~l~~---~i~~lp~G~~T~vge~ 366 (479)
++|+ +|++++|||.- .+ -||..- |... ..+-.+++.+.++.+|+.+ .++..|
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP---------- 155 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP---------- 155 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC----------
Confidence 8887 79999999973 22 144433 3321 2345678888999998854 344444
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhc-CCEEEEEeCC
Q 011713 367 GENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYG 443 (479)
Q Consensus 367 G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-~D~I~vl~~G 443 (479)
..||||||||+.||-||..+|++||-||||.|||.....+|.+.|+++. .+..+++|||+|..++. ||||+||.+|
T Consensus 156 -HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G 234 (534)
T COG4172 156 -HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHG 234 (534)
T ss_pred -cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEecc
Confidence 6799999999999999999999999999999999999999999998864 37899999999999987 9999999999
Q ss_pred EEEEecChhhhhc-cCchHHHHH
Q 011713 444 ELVEYDLPSNLMK-TNSAFSKLV 465 (479)
Q Consensus 444 ~Ive~G~~~eLl~-~~g~y~~l~ 465 (479)
+|||+|+-++|.+ ....|.+..
T Consensus 235 ~ivE~~~t~~lF~~PqHpYTr~L 257 (534)
T COG4172 235 EIVETGTTETLFAAPQHPYTRKL 257 (534)
T ss_pred EEeecCcHHHHhhCCCChHHHHH
Confidence 9999999999997 445565543
No 346
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=9.3e-38 Score=332.71 Aligned_cols=191 Identities=25% Similarity=0.307 Sum_probs=163.1
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
-++++|++++|++ . .|+++||+|++||++||+||||||||||+++|+|+.+|++|+|.++ ..++
T Consensus 340 ~l~~~~ls~~~~~--~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD--F-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC--E-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 4899999999964 2 5999999999999999999999999999999999999999999986 1599
Q ss_pred EEcCCCcc-ccccHHhhcCCCC-CC-CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 011713 312 IIPQEPTL-FRGSVRTNLDPLG-MY-SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (479)
Q Consensus 312 ~V~Q~~~l-F~gTi~eNi~~~~-~~-~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p 388 (479)
|+||++.+ ++.|++||+.+.. .. .+..+.++++..++.+...+.| ..||||||||++|||||+++|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-----------~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNV-----------KDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCc-----------ccCCHHHHHHHHHHHHHhcCC
Confidence 99999875 5669999997431 22 2345567777777765443332 579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCCEEEEecC
Q 011713 389 RILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGELVEYDL 450 (479)
Q Consensus 389 ~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~ 450 (479)
++|||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+.. ||||++|++ ++...|+
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999999999999999999998743 7899999999998764 999999965 8877776
No 347
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.1e-38 Score=281.15 Aligned_cols=203 Identities=26% Similarity=0.374 Sum_probs=171.7
Q ss_pred CCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCc--ccc-
Q 011713 245 NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT--LFR- 321 (479)
Q Consensus 245 ~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~--lF~- 321 (479)
..+++|+++||+|+.|+.|-|+|.+|||||||++.++|-..|++|+|+|||+|+..++...--..++-|+|||- .|.
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 34579999999999999999999999999999999999999999999999999999999998889999999997 354
Q ss_pred ccHHhhcCCC----C--CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeC
Q 011713 322 GSVRTNLDPL----G--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDE 395 (479)
Q Consensus 322 gTi~eNi~~~----~--~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE 395 (479)
-||.||+.+. . ..+.. ...-+.....+-+..+|.|++-.++++-.-|||||||-++|+-|.++.|+||+|||
T Consensus 97 lTieENl~la~~Rg~~rgl~~~--ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDE 174 (263)
T COG1101 97 LTIEENLALAESRGKKRGLSSA--LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDE 174 (263)
T ss_pred ccHHHHHHHHHhcCcccccchh--hhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecc
Confidence 4999999532 1 11211 01112233445688899999999999988999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchh-hhcCCEEEEEeCCEEEEec
Q 011713 396 ATASIDSATDAILQRIIREEF--PGSTVITIAHRVPT-ITDSDMVMVLSYGELVEYD 449 (479)
Q Consensus 396 ~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~-i~~~D~I~vl~~G~Ive~G 449 (479)
=|+||||.+...+++.=.+.- .+-|+++|||.+.- +..-+|.++|++|+||-.=
T Consensus 175 HTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 175 HTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred hhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 999999999888887655532 35799999999986 4557999999999999643
No 348
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=7.2e-38 Score=272.30 Aligned_cols=212 Identities=27% Similarity=0.409 Sum_probs=175.1
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCcc-cc-----
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL-FR----- 321 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~l-F~----- 321 (479)
.+.+.|||++++|+++||+|.+|||||||+++|.|..+|++|+|++||.++.-=+...--++|-+++|||.- |+
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 478999999999999999999999999999999999999999999999999776766667889999999852 32
Q ss_pred ccH-----HhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCC
Q 011713 322 GSV-----RTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEA 396 (479)
Q Consensus 322 gTi-----~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~ 396 (479)
|+| +-|=.+.++...+++.+.++.+|+. |+--+-. -..||.|||||+|+||||.-+|+|+|-|||
T Consensus 107 GqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~------Pdhan~~----~~~la~~QKQRVaLARALIL~P~iIIaDeA 176 (267)
T COG4167 107 GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLL------PDHANYY----PHMLAPGQKQRVALARALILRPKIIIADEA 176 (267)
T ss_pred hhHhcchhhhcccCChHHHHHHHHHHHHHhccC------ccccccc----hhhcCchhHHHHHHHHHHhcCCcEEEehhh
Confidence 233 2232222334567899999999874 5432222 257999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHH--CCCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhcc--CchHHHHHHHHH
Q 011713 397 TASIDSATDAILQRIIREE--FPGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKT--NSAFSKLVAEYR 469 (479)
Q Consensus 397 TSaLD~~te~~i~~~l~~~--~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~--~g~y~~l~~~~~ 469 (479)
..+||.....++.+.+-++ ..|-.-|.|+.++..+++ +|+|+||++|+++|.|+..++++. ...-++|++...
T Consensus 177 l~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~~~TkRlieShF 254 (267)
T COG4167 177 LASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIESHF 254 (267)
T ss_pred hhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCccHHHHHHHHHHh
Confidence 9999999988887776554 347899999999999998 899999999999999999999973 445566666543
No 349
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=334.32 Aligned_cols=207 Identities=22% Similarity=0.308 Sum_probs=157.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++||+++|++ +++|+|+||+|++|+++|||||||||||||+++|+|+++|++|+|.++|.. .++|
T Consensus 2 i~i~nls~~~g~--~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~ 68 (638)
T PRK10636 2 IVFSSLQIRRGV--RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAW 68 (638)
T ss_pred EEEEEEEEEeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEE
Confidence 789999999964 359999999999999999999999999999999999999999999999842 4788
Q ss_pred EcCCCccccccHHhhcCCCC----CCCH-----------HHHHHH---HH-------HccHHHHHHhCCcccc-ccccCC
Q 011713 313 IPQEPTLFRGSVRTNLDPLG----MYSD-----------NEIWEA---ME-------KCQLKATISRLPMLLD-SSVSDE 366 (479)
Q Consensus 313 V~Q~~~lF~gTi~eNi~~~~----~~~~-----------~~i~~a---~~-------~a~l~~~i~~lp~G~~-T~vge~ 366 (479)
++|++..+..|+.+++.-.. ..+. ..+... .. ...+.+.+..+ |+. ......
T Consensus 69 ~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~ 146 (638)
T PRK10636 69 VNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLERP 146 (638)
T ss_pred EecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcCc
Confidence 88876555555555442100 0000 000000 00 01122233332 232 112233
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCEE
Q 011713 367 GENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGEL 445 (479)
Q Consensus 367 G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~I 445 (479)
-..||||||||++|||||+.+|++|||||||++||+++...+.+.|++. +.|+|+|||++..+.. ||+|++|++|++
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i 224 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSL 224 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEE
Confidence 4579999999999999999999999999999999999999999998875 5799999999999865 999999999999
Q ss_pred EE-ecChhhhhc
Q 011713 446 VE-YDLPSNLMK 456 (479)
Q Consensus 446 ve-~G~~~eLl~ 456 (479)
+. .|+++....
T Consensus 225 ~~~~g~~~~~~~ 236 (638)
T PRK10636 225 FEYTGNYSSFEV 236 (638)
T ss_pred EEecCCHHHHHH
Confidence 74 788887764
No 350
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.6e-37 Score=280.99 Aligned_cols=157 Identities=23% Similarity=0.288 Sum_probs=129.4
Q ss_pred CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHH
Q 011713 246 TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVR 325 (479)
Q Consensus 246 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~ 325 (479)
..++|+|+||++++|++++|+||||||||||+++++ +++|+|.++|.. ... .|+.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH----------
Confidence 356999999999999999999999999999999985 379999998752 221 2445788877
Q ss_pred hhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcC--CCEEEEeCCCCCCCHH
Q 011713 326 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR--NRILILDEATASIDSA 403 (479)
Q Consensus 326 eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~--p~iliLDE~TSaLD~~ 403 (479)
.++++..++. .. .+......||||||||++||||++++ |+++||||||++||++
T Consensus 68 --------------~~~l~~~~L~---------~~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~ 123 (176)
T cd03238 68 --------------LQFLIDVGLG---------YL-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQ 123 (176)
T ss_pred --------------HHHHHHcCCC---------cc-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHH
Confidence 1233333321 11 24556678999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHC-CCcEEEEEccCchhhhcCCEEEEEeCCEE
Q 011713 404 TDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVLSYGEL 445 (479)
Q Consensus 404 te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl~~G~I 445 (479)
+.+.+.+.+++.. .++|+|+|||+++.++.||+|++|++|+.
T Consensus 124 ~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 124 DINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 9999999998865 48999999999999999999999966443
No 351
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-36 Score=277.80 Aligned_cols=206 Identities=23% Similarity=0.298 Sum_probs=171.2
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCH-HHHhccc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKL 310 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~-~~lr~~i 310 (479)
-|+|+||+++|.+ +++|+|||++|++||+.+|+|+||||||||++++.+.++|++|.+.+.|+....-+. .++|++|
T Consensus 31 li~l~~v~v~r~g--k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~I 108 (257)
T COG1119 31 LIELKNVSVRRNG--KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRI 108 (257)
T ss_pred eEEecceEEEECC--EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHh
Confidence 5999999999964 469999999999999999999999999999999999999999999999999988887 9999999
Q ss_pred eEEcCCCc---cccccHHhhcC--CC------C-CCCHHHH---HHHHHHccHHHHHHhCCccccccccCCCCCCChhHH
Q 011713 311 SIIPQEPT---LFRGSVRTNLD--PL------G-MYSDNEI---WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (479)
Q Consensus 311 ~~V~Q~~~---lF~gTi~eNi~--~~------~-~~~~~~i---~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQr 375 (479)
|+|+-+-. .=+.+++|=+. ++ . +.++++. ...++..++.+.. +..=..||-|||
T Consensus 109 G~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la-----------~r~~~~LS~Ge~ 177 (257)
T COG1119 109 GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLA-----------DRPFGSLSQGEQ 177 (257)
T ss_pred CccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhc-----------cCchhhcCHhHH
Confidence 99986443 22446776652 11 1 3455443 3345555555432 222357999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC---CcEEEEEccCchhhhc-CCEEEEEeCCEEEEecC
Q 011713 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP---GSTVITIAHRVPTITD-SDMVMVLSYGELVEYDL 450 (479)
Q Consensus 376 QRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~---~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~ 450 (479)
||+-|||||+++|++|||||||++||......+.+.+.+... ..|+|+|||+.+.+.. .++++.+++|+++.+|.
T Consensus 178 rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 178 RRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 999999999999999999999999999999888888887653 5799999999998766 69999999999998874
No 352
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=3e-36 Score=326.08 Aligned_cols=205 Identities=23% Similarity=0.315 Sum_probs=154.9
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++||+++|++ .++|+|+||+|++|+++|||||||||||||+++|+|+++|++|+|.++|.. .+++
T Consensus 4 l~i~~ls~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~~ 70 (635)
T PRK11147 4 ISIHGAWLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVAR 70 (635)
T ss_pred EEEeeEEEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEEE
Confidence 899999999964 359999999999999999999999999999999999999999999998731 2566
Q ss_pred EcCCCcc-ccccHHhhcCCCC-------------------CCCHHHHHHH------HH-------HccHHHHHHhCCccc
Q 011713 313 IPQEPTL-FRGSVRTNLDPLG-------------------MYSDNEIWEA------ME-------KCQLKATISRLPMLL 359 (479)
Q Consensus 313 V~Q~~~l-F~gTi~eNi~~~~-------------------~~~~~~i~~a------~~-------~a~l~~~i~~lp~G~ 359 (479)
++|++.. ..+++.+++.... +..++.+... +. ...+.+.+..+ |+
T Consensus 71 l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl 148 (635)
T PRK11147 71 LQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--GL 148 (635)
T ss_pred eccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--CC
Confidence 7776532 2245555431000 0000101000 00 01122233332 22
Q ss_pred cccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEE
Q 011713 360 DSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVM 438 (479)
Q Consensus 360 ~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~ 438 (479)
. ....-..||||||||++|||||+.+|+||||||||++||+.+...+.+.|.++ +.|+|+|||+...+.. ||+|+
T Consensus 149 ~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~i~ 224 (635)
T PRK11147 149 D--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATRIV 224 (635)
T ss_pred C--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCeEE
Confidence 1 12233579999999999999999999999999999999999999999999886 3699999999999865 99999
Q ss_pred EEeCCEEEE-ecChhhhhc
Q 011713 439 VLSYGELVE-YDLPSNLMK 456 (479)
Q Consensus 439 vl~~G~Ive-~G~~~eLl~ 456 (479)
+|++|+++. .|++++.++
T Consensus 225 ~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 225 DLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred EEECCEEEEecCCHHHHHH
Confidence 999999985 699888765
No 353
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=5.3e-37 Score=354.30 Aligned_cols=200 Identities=23% Similarity=0.211 Sum_probs=168.0
Q ss_pred CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccC----CCCCceEEECCeecCCCCHHHHhccceEEcCCCccccc
Q 011713 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV----EPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG 322 (479)
Q Consensus 247 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~----~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~g 322 (479)
+++|+|+|+++++||.+||+||||||||||+|+|+|.. .|.+|+|.+||.++.+.. ..+|+.++||+|++.+|..
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 35899999999999999999999999999999999986 579999999999987654 3567889999999988875
Q ss_pred -cHHhhcCCCC----------CCCHHHH-----HHHHHHccHHHHHHhCCccccccccC-CCCCCChhHHHHHHHHHHhh
Q 011713 323 -SVRTNLDPLG----------MYSDNEI-----WEAMEKCQLKATISRLPMLLDSSVSD-EGENWSVGQRQLFCLGRVLL 385 (479)
Q Consensus 323 -Ti~eNi~~~~----------~~~~~~i-----~~a~~~a~l~~~i~~lp~G~~T~vge-~G~~LSgGQrQRlaiARAll 385 (479)
|++||+.+.. ..+.++. .++++..+ |.+-.||.+|+ ....||||||||++|||||+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYG-------LSHTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcC-------cccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 9999996421 1233332 12333333 34457888985 45689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCch-h-hhcCCEEEEEeCCEEEEecChhhh
Q 011713 386 KRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVP-T-ITDSDMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 386 ~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~-~-i~~~D~I~vl~~G~Ive~G~~~eL 454 (479)
.+|+|++||||||+||+.+...+.+.|+++.+ ++|+|+++|+++ . .+.+|+|++|++|+++..|+.+++
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence 99999999999999999999999999998753 799999999974 4 456999999999999999999887
No 354
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.5e-37 Score=277.49 Aligned_cols=215 Identities=24% Similarity=0.420 Sum_probs=184.6
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.+++++|+.+|++ ..+++|+||.++||+..+++|+|||||||.+++|+|+.+|++|+|.++|.+++. ..+.+||
T Consensus 2 ~L~ie~vtK~Fg~--k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSFGD--KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIG 75 (300)
T ss_pred ceEEecchhccCc--eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcc
Confidence 3799999999964 459999999999999999999999999999999999999999999999999875 4577999
Q ss_pred EEcCCCccccc-cHHhhcCCCC---CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcC
Q 011713 312 IIPQEPTLFRG-SVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~ 387 (479)
|+|-|--|+.- |+.|-|.++. ..+.+|+.+- +..|.+++.-. -.-...-..||-|..|+|-+--|++++
T Consensus 76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~~i~--~~~~~kIk~LSKGnqQKIQfisaviHe 148 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERLEIV--GKKTKKIKELSKGNQQKIQFISAVIHE 148 (300)
T ss_pred cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhcccc--ccccchHHHhhhhhhHHHHHHHHHhcC
Confidence 99999999976 9999997642 4556655433 44577766421 112234467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhccCc
Q 011713 388 NRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKTNS 459 (479)
Q Consensus 388 p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~~g 459 (479)
|+++|||||.|+|||.+.+.+.+.+.++. +|.|+|+-|||++.++. ||+++.|++|+.|-+|+-++..+..|
T Consensus 149 PeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 149 PELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred CCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 99999999999999999999999998865 58999999999999976 99999999999999999998876443
No 355
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=5.4e-37 Score=326.84 Aligned_cols=193 Identities=26% Similarity=0.357 Sum_probs=158.8
Q ss_pred EeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEE-----------ECCeecCCCCHH
Q 011713 236 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL-----------IDGLDICSMGLK 304 (479)
Q Consensus 236 ~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~-----------i~g~~i~~~~~~ 304 (479)
++++++|+++ ..+|++++ ++++||++||+||||||||||+++|+|+++|++|+|. ++|.++.++...
T Consensus 77 ~~~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 77 EEPVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred cCceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 4489999753 35899999 9999999999999999999999999999999999998 999988654321
Q ss_pred --HHhcc----ceEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHH
Q 011713 305 --DLRTK----LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (479)
Q Consensus 305 --~lr~~----i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRl 378 (479)
..+.. +.+++|.|.+|.+|++||+... ...+++.++++..++.+.. |+.+ ..||||||||+
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~--~~~~~~~~~l~~l~l~~~~-------~~~~----~~LSgGe~qrv 221 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV--DERGKLDEVVERLGLENIL-------DRDI----SELSGGELQRV 221 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhh--hHHHHHHHHHHHcCCchhh-------cCCh----hhCCHHHHHHH
Confidence 11123 4455667778889999999632 1235667777777765432 3333 56999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCC
Q 011713 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYG 443 (479)
Q Consensus 379 aiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G 443 (479)
+||||++++|++||||||||+||+.+...+.+.|+++.+++|+|+|+|+++.+.. ||+|++|++|
T Consensus 222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999987668999999999998865 9999999874
No 356
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.5e-36 Score=347.70 Aligned_cols=205 Identities=23% Similarity=0.289 Sum_probs=168.0
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEECCeecCCCCHHHHhccceEEcCCCccccc-c
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-S 323 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~g-T 323 (479)
.+|+|+|+.|+|||.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+.. .|+.++||+|++.+|.. |
T Consensus 179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcCc
Confidence 4899999999999999999999999999999999999998 999999999987654 37889999999888764 9
Q ss_pred HHhhcCCCC-------------CCCHH----------HHH---HHHHHcc------HHHHHH--hCCccccccccCCC-C
Q 011713 324 VRTNLDPLG-------------MYSDN----------EIW---EAMEKCQ------LKATIS--RLPMLLDSSVSDEG-E 368 (479)
Q Consensus 324 i~eNi~~~~-------------~~~~~----------~i~---~a~~~a~------l~~~i~--~lp~G~~T~vge~G-~ 368 (479)
++|||.+.. +.+.+ ++. +++...+ .++.++ .|.+-.||.||+.. .
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 999996421 00111 111 1111111 122333 34555689998654 6
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCc--hhhhcCCEEEEEeCCE
Q 011713 369 NWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRV--PTITDSDMVMVLSYGE 444 (479)
Q Consensus 369 ~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl--~~i~~~D~I~vl~~G~ 444 (479)
.||||||||++|||+++.+|++|+|||||++||+.+...+.+.|++.. .++|+|+++|++ .....+|+|++|++|+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 899999999999999999999999999999999999999999999874 378999999997 3567799999999999
Q ss_pred EEEecChhhhh
Q 011713 445 LVEYDLPSNLM 455 (479)
Q Consensus 445 Ive~G~~~eLl 455 (479)
++..|+.++++
T Consensus 416 ivy~G~~~~~~ 426 (1470)
T PLN03140 416 IVYQGPRDHIL 426 (1470)
T ss_pred EEEeCCHHHHH
Confidence 99999998885
No 357
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-35 Score=264.11 Aligned_cols=214 Identities=28% Similarity=0.343 Sum_probs=184.5
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhcc--CCCCCceEEECCeecCCCCHHHH-hc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDL-RT 308 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~--~~p~~G~I~i~g~~i~~~~~~~l-r~ 308 (479)
-++++|++.+-.+. +.+|++|||+|++||..||.||||||||||.+.|+|. |++++|+|++||.||.++++++. |.
T Consensus 3 ~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 3 MLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 37899999888543 3599999999999999999999999999999999996 58999999999999999998875 66
Q ss_pred cceEEcCCCccccc-cHHhhcCCC--C--C------CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHH
Q 011713 309 KLSIIPQEPTLFRG-SVRTNLDPL--G--M------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 309 ~i~~V~Q~~~lF~g-Ti~eNi~~~--~--~------~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
-|.+-+|.|.=++| |+.+-|+.. . . ...+++.++++..++++... +-.|. ..+|||||.|
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l------~R~vN---~GFSGGEkKR 152 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFL------ERYVN---EGFSGGEKKR 152 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHh------hcccC---CCcCcchHHH
Confidence 79999999999999 888877521 1 1 12467888888888877221 22333 4699999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcC--CEEEEEeCCEEEEecChhhh
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDS--DMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~--D~I~vl~~G~Ive~G~~~eL 454 (479)
.-|+.+++-+|++.|||||-|+||.++-+.|-+.++.+. +++++++|||.-..+... |++.||-+|+|+..|.+ ||
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el 231 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-EL 231 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HH
Confidence 999999999999999999999999999999999998875 589999999999988875 99999999999999999 77
Q ss_pred hc
Q 011713 455 MK 456 (479)
Q Consensus 455 l~ 456 (479)
..
T Consensus 232 ~~ 233 (251)
T COG0396 232 AE 233 (251)
T ss_pred HH
Confidence 64
No 358
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.7e-35 Score=318.17 Aligned_cols=220 Identities=19% Similarity=0.227 Sum_probs=163.1
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccC---CCCCceEEECCeecCC--CCH--
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV---EPENGRILIDGLDICS--MGL-- 303 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~---~p~~G~I~i~g~~i~~--~~~-- 303 (479)
..|+++|++|+|++ .++|+|+||+|++|+++||||+||||||||+++|+|.. .|.+|+|.+.++++.. .+.
T Consensus 176 ~~I~i~nls~~y~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 176 KDIHMENFSISVGG--RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eeEEEceEEEEeCC--CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 36999999999964 34999999999999999999999999999999999864 5899999876554321 111
Q ss_pred ----------HHHhccceEEcCCCccccccHHhhcCCC--CCCCH----HHHHHHHHHccH----------HHHHHhCCc
Q 011713 304 ----------KDLRTKLSIIPQEPTLFRGSVRTNLDPL--GMYSD----NEIWEAMEKCQL----------KATISRLPM 357 (479)
Q Consensus 304 ----------~~lr~~i~~V~Q~~~lF~gTi~eNi~~~--~~~~~----~~i~~a~~~a~l----------~~~i~~lp~ 357 (479)
..+++.+++++|+|.+...+..+|.... ...+. +++.++++..++ ...+..+
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l-- 331 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL-- 331 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC--
Confidence 1235668999998876544555554211 11111 233333333222 1122222
Q ss_pred cccc-cccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CC
Q 011713 358 LLDS-SVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SD 435 (479)
Q Consensus 358 G~~T-~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D 435 (479)
|++. .....-..||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ ++|+|+|||++..+.. ||
T Consensus 332 gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d 409 (718)
T PLN03073 332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVT 409 (718)
T ss_pred CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCC
Confidence 2211 111122579999999999999999999999999999999999999999999886 6899999999999876 99
Q ss_pred EEEEEeCCEEE-EecChhhhhc
Q 011713 436 MVMVLSYGELV-EYDLPSNLMK 456 (479)
Q Consensus 436 ~I~vl~~G~Iv-e~G~~~eLl~ 456 (479)
+|++|++|+++ ..|++++..+
T Consensus 410 ~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 410 DILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred EEEEEECCEEEEeCCCHHHHHH
Confidence 99999999996 6788877654
No 359
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=7.8e-36 Score=260.69 Aligned_cols=136 Identities=42% Similarity=0.716 Sum_probs=126.3
Q ss_pred eeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccc-cHHhhc
Q 011713 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNL 328 (479)
Q Consensus 250 L~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~g-Ti~eNi 328 (479)
|+|+||+|++|++++|+|+||||||||+++|+|.++|++|+|.+||.++.+.+...+|+.++|++|++.+|.+ |++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999988 59999
Q ss_pred CCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 011713 329 DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA 398 (479)
Q Consensus 329 ~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TS 398 (479)
..+++++++++..++.+ ..++.++.+...||||||||++||||++++|++|||||||+
T Consensus 80 -----~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -----ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -----HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -----ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 34677888888887754 45778888889999999999999999999999999999996
No 360
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.5e-34 Score=265.15 Aligned_cols=189 Identities=23% Similarity=0.319 Sum_probs=158.2
Q ss_pred CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHh
Q 011713 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326 (479)
Q Consensus 247 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~e 326 (479)
.++|+||||++++||++||||++|||||||+++|+|.|+|++|+|.++|.--.-+.. ..|+-| +-|-||
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~l-----g~Gf~p------elTGre 108 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-----GAGFDP------ELTGRE 108 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhc-----ccCCCc------ccchHH
Confidence 369999999999999999999999999999999999999999999999942211111 122222 248899
Q ss_pred hcCCC-------CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCC
Q 011713 327 NLDPL-------GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATAS 399 (479)
Q Consensus 327 Ni~~~-------~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSa 399 (479)
||.+. ...-++.+.+..+-+.|.+|+.. || .+.|.|.+-|||+|=|.-.+|+|||+||..|.
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-------Pv----ktYSSGM~aRLaFsia~~~~pdILllDEvlav 177 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-------PV----KTYSSGMYARLAFSVATHVEPDILLLDEVLAV 177 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-------ch----hhccHHHHHHHHHhhhhhcCCCEEEEehhhhc
Confidence 99532 12235566777888899998753 33 67999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-CCCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhcc
Q 011713 400 IDSATDAILQRIIREE-FPGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 400 LD~~te~~i~~~l~~~-~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
-|+.=.++-.+.++++ .+++|+|+|||.++.++. |||+++|++|+|+..|++++.++.
T Consensus 178 GD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 178 GDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH
Confidence 9999888777888877 678999999999999977 999999999999999999998753
No 361
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4e-35 Score=313.15 Aligned_cols=215 Identities=27% Similarity=0.394 Sum_probs=184.5
Q ss_pred ccEEEEeEEEEeCCC---CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC---CCceEEECCeecCCCCHH
Q 011713 231 GRIELEDLKVRYRPN---TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP---ENGRILIDGLDICSMGLK 304 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~---~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p---~~G~I~i~g~~i~~~~~~ 304 (479)
..++|+|+++.-+.. .+.+|+|||.+++|||..||.||||||||||++.|+|..++ .+|+|++||. ..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cCchh
Confidence 368999999988654 36699999999999999999999999999999999999975 7999999994 45678
Q ss_pred HHhccceEEcCCCccccc-cHHhhcCCC------CCCC----HHHHHHHHHHccHHHHHHhCCccccccccC-CCCCCCh
Q 011713 305 DLRTKLSIIPQEPTLFRG-SVRTNLDPL------GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSD-EGENWSV 372 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~lF~g-Ti~eNi~~~------~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge-~G~~LSg 372 (479)
.+|+..|||+||..+++. ||+|++.+. ...+ ++++++.++.-++.+ + -||.+|. ++..+||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~-~------~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEK-C------ADTLIGNPGIRGLSG 173 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChh-h------ccceecCCCCCcccc
Confidence 899999999999999976 999999532 1123 345555666665542 2 4788874 3468999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchh--hhcCCEEEEEeCCEEEEec
Q 011713 373 GQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPT--ITDSDMVMVLSYGELVEYD 449 (479)
Q Consensus 373 GQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~--i~~~D~I~vl~~G~Ive~G 449 (479)
|||+|++||--++.||+||+||||||+||+.+...+.+.|+++. +|||||+.=|.++. ....|++++|.+|+++..|
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999999999999999999999999999999999999999865 49999999999985 5779999999999999999
Q ss_pred Chhhhh
Q 011713 450 LPSNLM 455 (479)
Q Consensus 450 ~~~eLl 455 (479)
+.+++.
T Consensus 254 ~~~~~~ 259 (613)
T KOG0061|consen 254 SPRELL 259 (613)
T ss_pred CHHHHH
Confidence 998875
No 362
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=244.80 Aligned_cols=192 Identities=23% Similarity=0.357 Sum_probs=163.7
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEECCeecCCCCHHHHhc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDLRT 308 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~---~G~I~i~g~~i~~~~~~~lr~ 308 (479)
.+.++||+.+.++. -.|-|+|++|.+||++-|.||||||||||+.-+.|++.++ +|++.+|++++.-++. -++
T Consensus 2 ~l~l~nvsl~l~g~--cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa--~qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA--AQR 77 (213)
T ss_pred ceeeeeeeecCCCc--eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch--hhh
Confidence 46789999887653 3899999999999999999999999999999999999884 8999999999998765 478
Q ss_pred cceEEcCCCccccc-cHHhhcCCC------CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 011713 309 KLSIIPQEPTLFRG-SVRTNLDPL------GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (479)
Q Consensus 309 ~i~~V~Q~~~lF~g-Ti~eNi~~~------~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiA 381 (479)
++|+++||++||+- ++-+||.+. +++.......|+++.++..+..+-| ..||||||-|+++-
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL~ 146 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVALL 146 (213)
T ss_pred heeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHHH
Confidence 99999999999986 999999642 1344566778999999999998888 57999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH--HCCCcEEEEEccCchhhhcCCEEE
Q 011713 382 RVLLKRNRILILDEATASIDSATDAILQRIIRE--EFPGSTVITIAHRVPTITDSDMVM 438 (479)
Q Consensus 382 RAll~~p~iliLDE~TSaLD~~te~~i~~~l~~--~~~~~TvI~IaHrl~~i~~~D~I~ 438 (479)
|+|+..|+.++||||.|.||..-...+.+-... ...+--+|.|||++.-+..-.|++
T Consensus 147 R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVi 205 (213)
T COG4136 147 RALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVI 205 (213)
T ss_pred HHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeee
Confidence 999999999999999999999877776665433 224788999999999887544443
No 363
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.7e-35 Score=255.86 Aligned_cols=214 Identities=23% Similarity=0.367 Sum_probs=184.1
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECC-eecCCCCHHHH-hcc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG-LDICSMGLKDL-RTK 309 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g-~~i~~~~~~~l-r~~ 309 (479)
.++++||+.++++- .+|+|+||++.+||.-+|+||||+||||++..|.|--+|++|+++++| .|++.++.... |.-
T Consensus 5 iL~~~~vsVsF~GF--~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 5 ILYLDGVSVSFGGF--KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred eEEEeceEEEEcce--eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 47899999999764 389999999999999999999999999999999999999999999999 99999987776 666
Q ss_pred ceEEcCCCccccc-cHHhhcCCC--C-------------CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChh
Q 011713 310 LSIIPQEPTLFRG-SVRTNLDPL--G-------------MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 373 (479)
Q Consensus 310 i~~V~Q~~~lF~g-Ti~eNi~~~--~-------------~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgG 373 (479)
||==+|.|..|.. |++||+... . ....+++.+++...+|.+.-... ...||-|
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~-----------A~~LSHG 151 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRL-----------AALLSHG 151 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhh-----------hhhhccc
Confidence 9999999999987 999999421 1 11234677788777776644332 3679999
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChh
Q 011713 374 QRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPS 452 (479)
Q Consensus 374 QrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~ 452 (479)
|||++-|+..+.++|++|+||||++++-.+.....-+.++.+.+.+++++|-|++..++. ||+|-||..|.+...|+.+
T Consensus 152 qKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld 231 (249)
T COG4674 152 QKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLD 231 (249)
T ss_pred hhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHH
Confidence 999999999999999999999999999555445666778888889999999999999976 9999999999999999999
Q ss_pred hhhccC
Q 011713 453 NLMKTN 458 (479)
Q Consensus 453 eLl~~~ 458 (479)
++-++.
T Consensus 232 ~v~~dp 237 (249)
T COG4674 232 EVQNDP 237 (249)
T ss_pred HhhcCc
Confidence 986543
No 364
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=2.3e-34 Score=299.39 Aligned_cols=208 Identities=27% Similarity=0.382 Sum_probs=164.7
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++|++++|++ +++|+|+||++.+|+++||||+||||||||+++|.|...|++|+|...+. -+++
T Consensus 3 ~i~~~~ls~~~g~--~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~ 69 (530)
T COG0488 3 MITLENLSLAYGD--RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVG 69 (530)
T ss_pred eEEEeeeEEeeCC--ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEE
Confidence 4899999999943 45999999999999999999999999999999999999999999998762 1699
Q ss_pred EEcCCCccccc-cHHhhcCCCC-CC--CHHHHHHHHH------------------H-------ccHHHHHHhCCccc-cc
Q 011713 312 IIPQEPTLFRG-SVRTNLDPLG-MY--SDNEIWEAME------------------K-------CQLKATISRLPMLL-DS 361 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~~-~~--~~~~i~~a~~------------------~-------a~l~~~i~~lp~G~-~T 361 (479)
|++|++.+.++ |+++.+..+. +. -..+++++.. . +.+...+..|.-.- ++
T Consensus 70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~ 149 (530)
T COG0488 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDR 149 (530)
T ss_pred EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccC
Confidence 99999999976 9999885321 10 0111111110 0 11122222221100 44
Q ss_pred cccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEE
Q 011713 362 SVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVL 440 (479)
Q Consensus 362 ~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl 440 (479)
++ ..||||||-|++|||||+.+|++|+|||||.+||.++-.-+.+-|.++ ++ |+|+|||+-..+.. |++|+-+
T Consensus 150 ~~----~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 150 PV----SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred ch----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEe
Confidence 55 469999999999999999999999999999999999999998888764 55 99999999999987 9999999
Q ss_pred eCCEEE-EecChhhhhccC
Q 011713 441 SYGELV-EYDLPSNLMKTN 458 (479)
Q Consensus 441 ~~G~Iv-e~G~~~eLl~~~ 458 (479)
+.|++. ..|+|+.-++..
T Consensus 224 d~g~l~~y~Gny~~~~~~r 242 (530)
T COG0488 224 DRGKLTPYKGNYSSYLEQK 242 (530)
T ss_pred cCCceeEecCCHHHHHHHH
Confidence 999886 578888877643
No 365
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=7.5e-34 Score=269.02 Aligned_cols=188 Identities=20% Similarity=0.229 Sum_probs=125.6
Q ss_pred CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHH-HHHhccCCCCCceEEECC-------eecCCC---CHHHHhc-cceEE
Q 011713 246 TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLI-SALFRLVEPENGRILIDG-------LDICSM---GLKDLRT-KLSII 313 (479)
Q Consensus 246 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~-~lL~g~~~p~~G~I~i~g-------~~i~~~---~~~~lr~-~i~~V 313 (479)
..++|+|+||+|++||++||+|+||||||||+ ..+. .+|++.+.. ..+..+ ....++. ..++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 34599999999999999999999999999996 4432 134432210 011001 0111221 23344
Q ss_pred cCCCcc-cc--cc---HHhhcCCC----CCCCHHHHHHHHHHccHHHHHHhCCccccc-cccCCCCCCChhHHHHHHHHH
Q 011713 314 PQEPTL-FR--GS---VRTNLDPL----GMYSDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVGQRQLFCLGR 382 (479)
Q Consensus 314 ~Q~~~l-F~--gT---i~eNi~~~----~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T-~vge~G~~LSgGQrQRlaiAR 382 (479)
.|++.. ++ .+ +.+...+. .....++..+.++.. |+.. ........||||||||++|||
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgG~~qrv~lar 150 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDV-----------GLGYLTLSRSAPTLSGGEAQRIRLAT 150 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHC-----------CCCcccccCccCcCCHHHHHHHHHHH
Confidence 444431 11 02 11111110 000111112222222 2322 244556789999999999999
Q ss_pred HhhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcCCEEEEE------eCCEEEEec
Q 011713 383 VLLKRN--RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVL------SYGELVEYD 449 (479)
Q Consensus 383 All~~p--~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl------~~G~Ive~G 449 (479)
|++++| ++|||||||++||+.+...+.+.|++.. ++.|+|+|||+++.++.||+|++| ++|+|+++|
T Consensus 151 al~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 151 QIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 999998 5999999999999999999999998764 478999999999999999999999 999999987
No 366
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=5.2e-32 Score=281.78 Aligned_cols=202 Identities=20% Similarity=0.314 Sum_probs=172.5
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccc
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i 310 (479)
.-++++|++|+|++. +++++++||.|++|++||||||||+|||||+|+|+|-..|.+|+|.++-. -++
T Consensus 320 ~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~i 387 (530)
T COG0488 320 LVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VKI 387 (530)
T ss_pred eeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eEE
Confidence 358999999999765 56999999999999999999999999999999999999999999987642 269
Q ss_pred eEEcCCC-ccccc-cHHhhcCCC-CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcC
Q 011713 311 SIIPQEP-TLFRG-SVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (479)
Q Consensus 311 ~~V~Q~~-~lF~g-Ti~eNi~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~ 387 (479)
||.+|+. .++.. |+.|++.-. ++..+.+++..|...++...- ..++| ..||||||-|+.||+.++.+
T Consensus 388 gyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~------~~~~v----~~LSGGEk~Rl~La~ll~~~ 457 (530)
T COG0488 388 GYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGED------QEKPV----GVLSGGEKARLLLAKLLLQP 457 (530)
T ss_pred EEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHH------HhCch----hhcCHhHHHHHHHHHHhccC
Confidence 9999988 44443 899998643 244478899998888775432 23444 46999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCEEEEe-cChhhhhcc
Q 011713 388 NRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGELVEY-DLPSNLMKT 457 (479)
Q Consensus 388 p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~-G~~~eLl~~ 457 (479)
|.+|||||||.+||.++-..+.++|.++ .-|+|+|||+...+.. |++|+++++ ++.+. |++++..+.
T Consensus 458 pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 458 PNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 9999999999999999999999999886 4699999999999987 999999999 77776 888776553
No 367
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=100.00 E-value=4.3e-30 Score=255.26 Aligned_cols=411 Identities=15% Similarity=0.187 Sum_probs=273.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011713 14 TRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLI----VAIPTVIVAKYIQGYYLSSARELMRMNGTTKA 89 (479)
Q Consensus 14 ~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (479)
+++|+|+........+....+...++.++.+.+.+.-.+-.... ++..++.+...+.+.+.++..++...++...+
T Consensus 221 ~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g 300 (728)
T KOG0064|consen 221 NSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKG 300 (728)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhcc
Confidence 46899999888888888888877777766655444433222211 11111222233445555555555555556667
Q ss_pred chHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------h
Q 011713 90 PIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVL--------L 161 (479)
Q Consensus 90 ~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 161 (479)
.+...-+-.+.+-++|-.|+..+...++.++..+..........+...|+...-+++.-.+....+.+++. .
T Consensus 301 ~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~ 380 (728)
T KOG0064|consen 301 YLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLA 380 (728)
T ss_pred HHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccC
Confidence 77777778889999999999998888887777766655554444445555443333322111111111000 0
Q ss_pred C-Ccc---cHHH--HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----------C--CCCCC-Cc
Q 011713 162 P-GKH---LPGF--VGLSLS---YALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHL-----------P--PEPPA-II 218 (479)
Q Consensus 162 ~-~~~---~~g~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~-----------~--~e~~~-~~ 218 (479)
. +.. ..+. .-.+.+ ........+..++..+.++.+...--.|+++.++. + +|... ..
T Consensus 381 s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~ 460 (728)
T KOG0064|consen 381 SEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRT 460 (728)
T ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccC
Confidence 0 110 0111 111111 12223344455566666666666666777654421 0 00000 00
Q ss_pred -c---CCCCCCC---CCCCccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE
Q 011713 219 -E---ETKPPAS---WPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 291 (479)
Q Consensus 219 -~---~~~~~~~---~~~~~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I 291 (479)
. ...+.+. ......|.++||-.--|.. ..+...++|+|++|-.+.|.||+|||||+|.+.|.|+||...|..
T Consensus 461 ~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~-~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L 539 (728)
T KOG0064|consen 461 IDESRNSNPLPTTDAIRNFNGIILENIPVITPAG-DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLL 539 (728)
T ss_pred ccccccCCcCCccchhhcccceEEecCceeccCc-ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCee
Confidence 0 0000000 0112358999997766654 448999999999999999999999999999999999999988877
Q ss_pred EECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCC--------CCCCHHHHHHHHHHccHHHHHHhCCccccccc
Q 011713 292 LIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL--------GMYSDNEIWEAMEKCQLKATISRLPMLLDSSV 363 (479)
Q Consensus 292 ~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~--------~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~v 363 (479)
.+-- +.+|-|+||.|+.=-||+||-|-+- ..++|+++++.++.+.|+...+ -..|+|..-
T Consensus 540 ~~P~-----------~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~q-r~~g~da~~ 607 (728)
T KOG0064|consen 540 SIPR-----------PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQ-REGGWDAVR 607 (728)
T ss_pred ecCC-----------CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHH-hccChhhhc
Confidence 6532 2369999999999999999998531 2478999999999999986554 466777543
Q ss_pred cCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEE
Q 011713 364 SDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVL 440 (479)
Q Consensus 364 ge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl 440 (479)
+--.-||||+|||++.||.++++|+--+|||+|||+-++.|..+.++.++. |-+.|.||||++..+.-..++-.
T Consensus 608 -dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 608 -DWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred -cHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHHhc
Confidence 334579999999999999999999999999999999999999999998874 88999999999998877666666
No 368
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-33 Score=243.03 Aligned_cols=188 Identities=25% Similarity=0.413 Sum_probs=159.2
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
++.+|++..-+ ...++.++||++.+||.+-|.||||||||||+++|+|+.+|++|+|+++|.+++... +++++.+-|
T Consensus 3 L~a~~L~~~R~--e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~y 79 (209)
T COG4133 3 LEAENLSCERG--ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLY 79 (209)
T ss_pred chhhhhhhccC--cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHH
Confidence 34556665543 345999999999999999999999999999999999999999999999999998754 456888899
Q ss_pred EcCCCccccc-cHHhhcCCCC----CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcC
Q 011713 313 IPQEPTLFRG-SVRTNLDPLG----MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (479)
Q Consensus 313 V~Q~~~lF~g-Ti~eNi~~~~----~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~ 387 (479)
+--.+-+-.. |+.||+.|.. ..+++.+++|+..++|..+ ..+| + .+||.||+.|+||||-++..
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp------~----~~LSAGQqRRvAlArL~ls~ 148 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLP------V----GQLSAGQQRRVALARLWLSP 148 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccc------h----hhcchhHHHHHHHHHHHcCC
Confidence 9888888665 9999998632 3578999999999999764 3344 4 36999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcC
Q 011713 388 NRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDS 434 (479)
Q Consensus 388 p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~ 434 (479)
+|++|||||+++||.+.+..+-..+.... ++-.||..||..-.+..+
T Consensus 149 ~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~a 196 (209)
T COG4133 149 APLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIASA 196 (209)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCcc
Confidence 99999999999999999999988887654 578999999998766543
No 369
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7e-33 Score=255.92 Aligned_cols=209 Identities=23% Similarity=0.329 Sum_probs=159.2
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEc-CCCccc-cccHH
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP-QEPTLF-RGSVR 325 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~-Q~~~lF-~gTi~ 325 (479)
++.+||||+||||++++++|+|||||||++|+|.|+..|++|.|.++|.+=.+ +.+++-+++++|. |...+. .-.+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechhh
Confidence 48999999999999999999999999999999999999999999999976444 3344444555543 433331 22233
Q ss_pred hhcCCC---CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCH
Q 011713 326 TNLDPL---GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDS 402 (479)
Q Consensus 326 eNi~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~ 402 (479)
|-+... -++++++..+-+ ..+++-| +++..+-..-..||-|||-|.-||-|||++|+||.|||||=+||.
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~-----~~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV 189 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERL-----DFLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV 189 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHH-----HHHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcch
Confidence 333211 134444443321 1122222 333334444578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHC--CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhccCchHHHH
Q 011713 403 ATDAILQRIIREEF--PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMKTNSAFSKL 464 (479)
Q Consensus 403 ~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l 464 (479)
.+...|.+.+++.. .++||+..||.++-+. .||||+.++.|+++..|+.++|.++-|.|+++
T Consensus 190 ~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~~k~~ 254 (325)
T COG4586 190 NAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEF 254 (325)
T ss_pred hHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCCceEE
Confidence 99999999998753 5899999999999875 59999999999999999999998776666544
No 370
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=7.5e-32 Score=233.00 Aligned_cols=227 Identities=24% Similarity=0.424 Sum_probs=176.7
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECC-----eecCCCCHHH-
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG-----LDICSMGLKD- 305 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g-----~~i~~~~~~~- 305 (479)
-++++++|..|.+.. --+||||++.|||..+|||+||||||||+++|.+-+.|++|+|.+.- .|+-.++..+
T Consensus 6 LL~V~~lsk~Yg~~~--gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 6 LLSVSGLSKLYGPGK--GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred ceeehhhhhhhCCCc--CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 378999999997643 68999999999999999999999999999999999999999999865 3444444433
Q ss_pred ---HhccceEEcCCCc--c-ccccHHhhcC----CCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHH
Q 011713 306 ---LRTKLSIIPQEPT--L-FRGSVRTNLD----PLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (479)
Q Consensus 306 ---lr~~i~~V~Q~~~--l-F~gTi~eNi~----~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQr 375 (479)
+|.--|+|.|+|- | ..-|---||- .-+.----.|++ .+.+|+++.+-. .+.+.+....+|||.+
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~-----~a~~WL~~VEI~-~~RiDD~PrtFSGGMq 157 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRA-----EAQDWLEEVEID-LDRIDDLPRTFSGGMQ 157 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHH-----HHHHHHHhcccC-cccccCcccccchHHH
Confidence 3556899999994 1 1111122331 000000011221 234677665433 3467778899999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChh
Q 011713 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPS 452 (479)
Q Consensus 376 QRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~ 452 (479)
||+.|||-|+..|+++.+||||-+||......+.+.++.+-. +-.++++||.+..++. +||..||++|+++|+|-.+
T Consensus 158 QRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTD 237 (258)
T COG4107 158 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTD 237 (258)
T ss_pred HHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccccc
Confidence 999999999999999999999999999999999999987653 6799999999999876 9999999999999999888
Q ss_pred hhhc-cCchHHHHHH
Q 011713 453 NLMK-TNSAFSKLVA 466 (479)
Q Consensus 453 eLl~-~~g~y~~l~~ 466 (479)
..+. ....|.++.-
T Consensus 238 rvLDDP~hPYTQLLV 252 (258)
T COG4107 238 RVLDDPHHPYTQLLV 252 (258)
T ss_pred ccccCCCCchHHHHH
Confidence 8886 5566877653
No 371
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.98 E-value=4.4e-32 Score=259.77 Aligned_cols=192 Identities=25% Similarity=0.312 Sum_probs=137.2
Q ss_pred eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHh-----c-cC----CCCCc-----------eEEECCeecCCCCHH---
Q 011713 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALF-----R-LV----EPENG-----------RILIDGLDICSMGLK--- 304 (479)
Q Consensus 249 vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~-----g-~~----~p~~G-----------~I~i~g~~i~~~~~~--- 304 (479)
.|+|+|++||.|..++|.|.||||||||++-++ + +. .|..+ -|.+|..||..-+..
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 699999999999999999999999999998653 1 22 13322 355565555432111
Q ss_pred -------HHhc----------------cceEEcCCCcc-ccccHHhhcCCCCCC-CHHHHHHHHHHccHHHHHHhCCccc
Q 011713 305 -------DLRT----------------KLSIIPQEPTL-FRGSVRTNLDPLGMY-SDNEIWEAMEKCQLKATISRLPMLL 359 (479)
Q Consensus 305 -------~lr~----------------~i~~V~Q~~~l-F~gTi~eNi~~~~~~-~~~~i~~a~~~a~l~~~i~~lp~G~ 359 (479)
.+|+ .+.|..++... .+-|+.||+.++... ..++..++++.+ |+
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~v-----------gL 158 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDV-----------GL 158 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHc-----------CC
Confidence 1111 12233333332 233555555432211 112223333333 44
Q ss_pred cc-cccCCCCCCChhHHHHHHHHHHhhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcC
Q 011713 360 DS-SVSDEGENWSVGQRQLFCLGRVLLKR---NRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDS 434 (479)
Q Consensus 360 ~T-~vge~G~~LSgGQrQRlaiARAll~~---p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~ 434 (479)
+. .++.....|||||+||++|||||+++ |+++||||||++||+.+...+.+.|+++. ++.|+|+|+|++..++.|
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 43 35777789999999999999999996 79999999999999999999999998865 478999999999999999
Q ss_pred CEEEEE------eCCEEEEecCh
Q 011713 435 DMVMVL------SYGELVEYDLP 451 (479)
Q Consensus 435 D~I~vl------~~G~Ive~G~~ 451 (479)
|+|++| ++|+|+++|++
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999974
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.98 E-value=3.8e-32 Score=251.57 Aligned_cols=164 Identities=21% Similarity=0.294 Sum_probs=134.2
Q ss_pred eeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCC---------ceEEECCeecCCCCHHHHhccceEEcCCCcccc
Q 011713 251 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN---------GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR 321 (479)
Q Consensus 251 ~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~---------G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~ 321 (479)
+++++++++| .++|+||||||||||+++|.++..|.. |++.++|.++.. ...++++++|+|+|..+-
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~~ 89 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGRY 89 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCce
Confidence 5789999999 999999999999999999999986653 468888877654 224678999999998871
Q ss_pred ccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhh----cCCCEEEEeCCC
Q 011713 322 GSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL----KRNRILILDEAT 397 (479)
Q Consensus 322 gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll----~~p~iliLDE~T 397 (479)
+ ....+++.++++. ++-.+.+ ...||||||||++|||++. ++|+++||||||
T Consensus 90 ~----------~~~~~~~~~~l~~----------~~~~~~~----~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 90 S----------IISQGDVSEIIEA----------PGKKVQR----LSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred e----------EEehhhHHHHHhC----------CCccccc----hhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 1 1123455555555 2223333 3579999999999999986 567999999999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeC
Q 011713 398 ASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSY 442 (479)
Q Consensus 398 SaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~ 442 (479)
++||+.+...+.+.|++..++.|+|+|||++..++.||+++.+..
T Consensus 146 ~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 146 AALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred ccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 999999999999999998778999999999999999999999854
No 373
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.97 E-value=6.3e-31 Score=247.00 Aligned_cols=192 Identities=17% Similarity=0.094 Sum_probs=144.6
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEee-CCcEEEEEcCCCCcHHHHHHHHh-ccCCCCCceEEECCeecCCCCHHHHhcc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFK-EGTRVGVVGRTGSGKTTLISALF-RLVEPENGRILIDGLDICSMGLKDLRTK 309 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~-~Ge~vaivG~sGsGKSTL~~lL~-g~~~p~~G~I~i~g~~i~~~~~~~lr~~ 309 (479)
.|+++|+. +|.+. ++|+|+.. +|+.++|+||||||||||+++|. .+|.+..+....+ .....+.....+..
T Consensus 5 ~i~l~nf~-~y~~~-----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE-----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc-----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEE
Confidence 58999998 77533 46777654 59999999999999999999999 5777776766654 22234445566778
Q ss_pred ceEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCcc-ccccccCCCCCCChhHHHHHHHHHHhhc--
Q 011713 310 LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPML-LDSSVSDEGENWSVGQRQLFCLGRVLLK-- 386 (479)
Q Consensus 310 i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G-~~T~vge~G~~LSgGQrQRlaiARAll~-- 386 (479)
|++++|++. ....+.... ..+.++..+... ++.| +++.+......|||||+||++||||+..
T Consensus 78 v~~~f~~~~----~~~~~~r~~-gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p 142 (213)
T cd03279 78 VSFTFQLGG----KKYRVERSR-GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALALSE 142 (213)
T ss_pred EEEEEEECC----eEEEEEEec-CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHH
Confidence 999999883 222233322 344444443320 1222 4455556678999999999999999974
Q ss_pred --------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEccCchhhhc-CCEEEEEeCCEE
Q 011713 387 --------RNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITD-SDMVMVLSYGEL 445 (479)
Q Consensus 387 --------~p~iliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaHrl~~i~~-~D~I~vl~~G~I 445 (479)
+|+++||||||++||+.+...+.+.++++.+ ++|+|+|||+++.+.. ||+|+++++|.+
T Consensus 143 ~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 143 VLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 6789999999999999999999999988765 7899999999998765 899999999863
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=7.4e-31 Score=251.84 Aligned_cols=192 Identities=21% Similarity=0.303 Sum_probs=139.3
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHh----------------ccCCCCCc------
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF----------------RLVEPENG------ 289 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~----------------g~~~p~~G------ 289 (479)
.|+++|. .+|.+ ..++++++ |++++|+||||||||||+++|+ ++..+.+|
T Consensus 3 ~i~~~nf-ksy~~--~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 74 (243)
T cd03272 3 QVIIQGF-KSYKD--QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSA 74 (243)
T ss_pred EEEEeCc-cCccc--CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceE
Confidence 3566654 13543 23778876 8999999999999999999998 44455555
Q ss_pred --eEEECCeecCC-C--CHHHHhccceEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHH--HhCCccc---
Q 011713 290 --RILIDGLDICS-M--GLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATI--SRLPMLL--- 359 (479)
Q Consensus 290 --~I~i~g~~i~~-~--~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i--~~lp~G~--- 359 (479)
+|.+++.+-.. + ....+++.++++||++.++. ...+.++++.+++.+++...- ..+|+|.
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~----------~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~ 144 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDK----------KNVTKNDVMNLLESAGFSRSNPYYIVPQGKINS 144 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECC----------eEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHH
Confidence 55555532110 0 12235666777777665543 134567788888877664311 0122332
Q ss_pred ----cccccCCCCCCChhHHHHHHHHHHhh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhh
Q 011713 360 ----DSSVSDEGENWSVGQRQLFCLGRVLL----KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTI 431 (479)
Q Consensus 360 ----~T~vge~G~~LSgGQrQRlaiARAll----~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i 431 (479)
+....+.+..||||||||++||||++ ++|+++||||||++||+.+.+.+.+.++++.+++|+|+++|+.+..
T Consensus 145 l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~ 224 (243)
T cd03272 145 LTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELL 224 (243)
T ss_pred hhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 22335677899999999999999996 4689999999999999999999999999987788999999999988
Q ss_pred hcCCEEEEEe
Q 011713 432 TDSDMVMVLS 441 (479)
Q Consensus 432 ~~~D~I~vl~ 441 (479)
+.||+|++|+
T Consensus 225 ~~~d~i~~l~ 234 (243)
T cd03272 225 EVADKFYGVK 234 (243)
T ss_pred hhCCEEEEEE
Confidence 8899999985
No 375
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.2e-30 Score=224.77 Aligned_cols=200 Identities=24% Similarity=0.347 Sum_probs=148.5
Q ss_pred EEEEeEEEEeC-----CCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECC----eecCCCCH
Q 011713 233 IELEDLKVRYR-----PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG----LDICSMGL 303 (479)
Q Consensus 233 I~~~~vsf~Y~-----~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g----~~i~~~~~ 303 (479)
+..+||+.++- +-.-|||+|+||+++.||++++-||||||||||++.|-+-|.|++|+|.+.. +|+-.-.+
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 67788876652 2234699999999999999999999999999999999999999999999853 35544444
Q ss_pred HH----HhccceEEcCCCccccc-c----HHhhcC-CCCCCC--HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCC
Q 011713 304 KD----LRTKLSIIPQEPTLFRG-S----VRTNLD-PLGMYS--DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 371 (479)
Q Consensus 304 ~~----lr~~i~~V~Q~~~lF~g-T----i~eNi~-~~~~~~--~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LS 371 (479)
.+ -|+.||||+|---..+- + +.|-+. .+-+.+ .++....+...++.+-+-+|| ...+|
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~La----------PaTFS 154 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLA----------PATFS 154 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCC----------CcccC
Confidence 43 36679999994332221 1 222221 111111 122333344444444444443 36899
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeC
Q 011713 372 VGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSY 442 (479)
Q Consensus 372 gGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~ 442 (479)
|||+||+.|||.+.-|-|||+|||||++||..+.+.+.+.|++.+ +|+.+|=|=|+-+.-+. |||++-|..
T Consensus 155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred CchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 999999999999999999999999999999999999999998754 58999999999876655 899987743
No 376
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.97 E-value=2.6e-30 Score=287.60 Aligned_cols=218 Identities=21% Similarity=0.342 Sum_probs=190.6
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCC-CHHHHhcc
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM-GLKDLRTK 309 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~-~~~~lr~~ 309 (479)
..+..+|++..|+.... +.+++|+.+++||+.++-|+|||||||+++++.|...|++|++.++|.++..- +.+..|++
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 46899999999986654 89999999999999999999999999999999999999999999999999864 45569999
Q ss_pred ceEEcCCCccccc-cHHhhcCCC---CCCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 011713 310 LSIIPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (479)
Q Consensus 310 i~~V~Q~~~lF~g-Ti~eNi~~~---~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiA 381 (479)
+||+||+..|++. |.||.+.+. .... .+.+.+.|+..++.++... ++ ..+|||+|+||++|
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~-------~~----~~ySgG~kRkLs~a 710 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK-------QV----RTYSGGNKRRLSFA 710 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc-------ch----hhCCCcchhhHHHH
Confidence 9999999999987 999999642 1222 2346777777877765443 33 57999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCC-cEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhccCc
Q 011713 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEFPG-STVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKTNS 459 (479)
Q Consensus 382 RAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~-~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~~g 459 (479)
-|++.+|++++|||||+++||.+++.+.+.+.+..++ +.+|..||.++..+. |||+..|.+|++..-|+.++|-++-|
T Consensus 711 ialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG 790 (885)
T KOG0059|consen 711 IALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRYG 790 (885)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhcC
Confidence 9999999999999999999999999999999998764 499999999999987 99999999999999999999976544
Q ss_pred h
Q 011713 460 A 460 (479)
Q Consensus 460 ~ 460 (479)
.
T Consensus 791 ~ 791 (885)
T KOG0059|consen 791 S 791 (885)
T ss_pred C
Confidence 3
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=1e-28 Score=237.99 Aligned_cols=178 Identities=19% Similarity=0.275 Sum_probs=137.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCC-CceEEECCe-ecCCCC--HHHHhccceEEcCCCcc---------c-cccHH
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGL-DICSMG--LKDLRTKLSIIPQEPTL---------F-RGSVR 325 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~~p~-~G~I~i~g~-~i~~~~--~~~lr~~i~~V~Q~~~l---------F-~gTi~ 325 (479)
...++||||||||||||++.|+++..|+ .|+++..|. |+-... ....+..+++++|++.. . .-||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6799999999999999999999999886 568888876 432211 11234589999999631 2 34788
Q ss_pred hhcCCCC---------CCCHHHHHHHHHHccHH----HH---------HHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 011713 326 TNLDPLG---------MYSDNEIWEAMEKCQLK----AT---------ISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (479)
Q Consensus 326 eNi~~~~---------~~~~~~i~~a~~~a~l~----~~---------i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA 383 (479)
+|+.... ....+++.++++.+++. .| +..++ .........||||||||++||||
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~----~~~~~~~~~lS~G~~qr~~la~a 180 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMG----GVWKESLTELSGGQRSLVALSLI 180 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhH----HhhcccccccCHHHHHHHHHHHH
Confidence 8874321 13457788888888874 00 11111 12334456899999999999999
Q ss_pred hh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEe
Q 011713 384 LL----KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLS 441 (479)
Q Consensus 384 ll----~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~ 441 (479)
+. ++|+++||||||++||+.+...+.+.|++..++.|+|+|||+.+.++.||+++-+.
T Consensus 181 l~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 181 LALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred HHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 97 68899999999999999999999999999888899999999999999999998774
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=5.3e-29 Score=233.10 Aligned_cols=184 Identities=20% Similarity=0.249 Sum_probs=138.4
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHh-ccc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR-TKL 310 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr-~~i 310 (479)
.|+++|.- +|.+ ..+++++++ +.++|+|||||||||++++|. +++|.+. ...| +++
T Consensus 5 ~l~l~nfk-~~~~--~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~-----~~~~~~~i 61 (212)
T cd03274 5 KLVLENFK-SYAG--EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRA-----SKMRQKKL 61 (212)
T ss_pred EEEEECcc-cCCC--CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCH-----HHhhhhhH
Confidence 47888875 6753 348999987 899999999999999999997 3355443 2334 679
Q ss_pred eEEcCCCccccc-cHHhhcCCCCCC-CHHHH-----HHHHHH----ccHHHHHHhCCccccccccCCCCCCChhHHHHHH
Q 011713 311 SIIPQEPTLFRG-SVRTNLDPLGMY-SDNEI-----WEAMEK----CQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 311 ~~V~Q~~~lF~g-Ti~eNi~~~~~~-~~~~i-----~~a~~~----a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRla 379 (479)
++++|+..+++. |.++++.++... ..+.+ ...-.. .+-...+..||++.++.++ .||+|||||++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~----~lS~G~~~r~~ 137 (212)
T cd03274 62 SDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS----NLSGGEKTLSS 137 (212)
T ss_pred HHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh----hcCHHHHHHHH
Confidence 999999887665 777777543211 11100 000000 0111134556888887754 69999999999
Q ss_pred HHHHhhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeC
Q 011713 380 LGRVLLK----RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSY 442 (479)
Q Consensus 380 iARAll~----~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~ 442 (479)
||||+.. +|++++|||||++||+.+...+.+.++++.++.|+|+|||+....+.||+|++|..
T Consensus 138 la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 138 LALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 9999963 58999999999999999999999999998888999999999988899999999964
No 379
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=1.9e-29 Score=218.33 Aligned_cols=207 Identities=20% Similarity=0.308 Sum_probs=173.8
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
+.++||+..- =|-.+|..+.+||.+=+|||+|||||||+--++|+. |-+|+|.++|.|+..++..++-++=+|
T Consensus 4 ~qln~v~~~t------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 4 MQLNDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeeccccccc------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHH
Confidence 5677776432 266789999999999999999999999999999997 579999999999999999999999999
Q ss_pred EcCCC-ccccccHHhhcCCCCCC--CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc---
Q 011713 313 IPQEP-TLFRGSVRTNLDPLGMY--SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK--- 386 (479)
Q Consensus 313 V~Q~~-~lF~gTi~eNi~~~~~~--~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~--- 386 (479)
..|+. ..|.-.+...+++..++ -.+++.++|++.+++ -.++..-..|||||+||+-+|-.++.
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~-----------DKL~Rs~~qLSGGEWQRVRLAav~LQv~P 145 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALD-----------DKLGRSTNQLSGGEWQRVRLAAVVLQITP 145 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhccc-----------chhhhhhhhcCcccceeeEEeEEEEEecC
Confidence 98865 47888899988764322 234555555555544 34444557899999999999999886
Q ss_pred --CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCch-hhhcCCEEEEEeCCEEEEecChhhhhcc
Q 011713 387 --RN--RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVP-TITDSDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 387 --~p--~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~-~i~~~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
|| ++||||||.++||...+..+...|.++. .|.|+|+..|++. |+++||+++.+..|++...|..+|.+..
T Consensus 146 d~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 146 DANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 33 6999999999999999999888888876 4899999999997 8999999999999999999999999865
No 380
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.95 E-value=2.5e-28 Score=227.38 Aligned_cols=162 Identities=24% Similarity=0.257 Sum_probs=129.4
Q ss_pred eEEeeCCcEEEEEcCCCCcHHHHHHHHh----ccCCCCCceEEECCeecCCCCHHHHhccceEEcCCC-----ccccc-c
Q 011713 254 TCTFKEGTRVGVVGRTGSGKTTLISALF----RLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP-----TLFRG-S 323 (479)
Q Consensus 254 sl~i~~Ge~vaivG~sGsGKSTL~~lL~----g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~-----~lF~g-T 323 (479)
++++.+| +++|+||||||||||++.|. |...|.+|.+..+...+. ....+..+++++|++ .++.. |
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~---~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIR---EGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHh---CCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 4566677 99999999999999999984 998898887762222222 234567899999998 44433 8
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHH------HHHHHHhhcCCCEEEEeCCC
Q 011713 324 VRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL------FCLGRVLLKRNRILILDEAT 397 (479)
Q Consensus 324 i~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQR------laiARAll~~p~iliLDE~T 397 (479)
+.+|+.+. .++++.+.+ .+....||+||+|| ++||||+..+|+++||||||
T Consensus 93 ~~~~~~~~---~~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~ 149 (204)
T cd03240 93 ILENVIFC---HQGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPT 149 (204)
T ss_pred Hhhceeee---chHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCc
Confidence 89998653 233433222 33456899999996 79999999999999999999
Q ss_pred CCCCHHHHH-HHHHHHHHHCC--CcEEEEEccCchhhhcCCEEEEEeC
Q 011713 398 ASIDSATDA-ILQRIIREEFP--GSTVITIAHRVPTITDSDMVMVLSY 442 (479)
Q Consensus 398 SaLD~~te~-~i~~~l~~~~~--~~TvI~IaHrl~~i~~~D~I~vl~~ 442 (479)
++||+.+.. .+.+.+++..+ ++|+|+|||++..+..||+|++|++
T Consensus 150 ~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 150 TNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred cccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 999999988 99999988765 7899999999999999999999965
No 381
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.95 E-value=9.1e-28 Score=264.47 Aligned_cols=104 Identities=26% Similarity=0.381 Sum_probs=93.8
Q ss_pred cccc-cccCCCCCCChhHHHHHHHHHHhhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhh
Q 011713 358 LLDS-SVSDEGENWSVGQRQLFCLGRVLLKRN---RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT 432 (479)
Q Consensus 358 G~~T-~vge~G~~LSgGQrQRlaiARAll~~p---~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~ 432 (479)
|++. .++.....||||||||++|||+|+++| +++||||||++||+.+...+.+.|+++. +++|+|+|+|++..++
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 5554 467778899999999999999999999 9999999999999999999999998875 5789999999999999
Q ss_pred cCCEEEEE------eCCEEEEecChhhhhccCchH
Q 011713 433 DSDMVMVL------SYGELVEYDLPSNLMKTNSAF 461 (479)
Q Consensus 433 ~~D~I~vl------~~G~Ive~G~~~eLl~~~g~y 461 (479)
.||+|++| ++|+|++.|+++++.+....|
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~ 932 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASY 932 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccH
Confidence 99999999 799999999999999755433
No 382
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.95 E-value=6.1e-29 Score=248.68 Aligned_cols=196 Identities=23% Similarity=0.323 Sum_probs=165.8
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
-|.++||+|+|+++. .+++++||-|..+++||+|||+|+|||||+|++.|...|..|.|.-.-+. +++
T Consensus 389 vi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KLP 456 (614)
T ss_pred eEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cch
Confidence 589999999998654 79999999999999999999999999999999999999999999765432 233
Q ss_pred EEcC---CCccccccHHhhcCC-CC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc
Q 011713 312 IIPQ---EPTLFRGSVRTNLDP-LG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (479)
Q Consensus 312 ~V~Q---~~~lF~gTi~eNi~~-~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~ 386 (479)
+-.| +..-++-|..||+.. ++ .-..+++...+..+|+....+..|. .+||+|||.|++.||..++
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHhc
Confidence 3334 334567788888853 33 3567889999999999865555542 5799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCEEEE-ecCh
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGELVE-YDLP 451 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive-~G~~ 451 (479)
.|.||+|||||++||.++-....++|.++ .-++|+|||....|.+ |++|++.+||++.. .|.+
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccH
Confidence 99999999999999999999999999986 4689999999999987 89999999999864 4443
No 383
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.95 E-value=5.8e-27 Score=268.11 Aligned_cols=212 Identities=23% Similarity=0.265 Sum_probs=152.6
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHH---------HHhccCCCCCc--------eEEEC
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLIS---------ALFRLVEPENG--------RILID 294 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~---------lL~g~~~p~~G--------~I~i~ 294 (479)
.++++|++. ..|+|+||+|++||.++|+|+||||||||++ +|.|...+..+ -|.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 478888752 2699999999999999999999999999999 55664333111 13444
Q ss_pred CeecCCCCH----------HHHhc---------cc-----eEEcCC------------------C---------------
Q 011713 295 GLDICSMGL----------KDLRT---------KL-----SIIPQE------------------P--------------- 317 (479)
Q Consensus 295 g~~i~~~~~----------~~lr~---------~i-----~~V~Q~------------------~--------------- 317 (479)
-.++..-.. +++|+ .. .+.+|. |
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 444432111 14441 11 122331 0
Q ss_pred -----ccccc-cHHhhcCCCC-CC-----CHHHHHHHHHHccHHHHHHhCCcccccc-ccCCCCCCChhHHHHHHHHHHh
Q 011713 318 -----TLFRG-SVRTNLDPLG-MY-----SDNEIWEAMEKCQLKATISRLPMLLDSS-VSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 318 -----~lF~g-Ti~eNi~~~~-~~-----~~~~i~~a~~~a~l~~~i~~lp~G~~T~-vge~G~~LSgGQrQRlaiARAl 384 (479)
..+.+ ||.||+.+.. ++ +.+++.+.++ .++.+ |++.. .+.....|||||+||++|||||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~------~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAraL 824 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIH------ALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYEL 824 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHH------HHHHc--CCcchhhcCccccCCHHHHHHHHHHHHH
Confidence 13333 7888886531 11 1233333321 22222 56554 6777789999999999999999
Q ss_pred h---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcCCEEEEEe------CCEEEEecChhhh
Q 011713 385 L---KRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVLS------YGELVEYDLPSNL 454 (479)
Q Consensus 385 l---~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl~------~G~Ive~G~~~eL 454 (479)
+ ++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|+|++..++.||+|++|. +|++++.|+++++
T Consensus 825 ~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 825 LAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred hhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHH
Confidence 8 5999999999999999999999999998865 4789999999999998999999996 8999999999999
Q ss_pred hccC
Q 011713 455 MKTN 458 (479)
Q Consensus 455 l~~~ 458 (479)
+...
T Consensus 905 ~~~~ 908 (1809)
T PRK00635 905 IHLH 908 (1809)
T ss_pred Hhcc
Confidence 8644
No 384
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.1e-26 Score=236.21 Aligned_cols=211 Identities=26% Similarity=0.396 Sum_probs=171.8
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHH-HHhccc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKL 310 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~-~lr~~i 310 (479)
-++++|++.. ..++|+||++++||+++|.|--|||+|=+++.|.|..++.+|+|.+||.++.--++. ..+.-|
T Consensus 263 ~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi 336 (500)
T COG1129 263 VLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGI 336 (500)
T ss_pred EEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCC
Confidence 3677777642 158899999999999999999999999999999999999999999999988877655 788899
Q ss_pred eEEcCCCc---cc-cccHHhhcCCC--CCCCHH-HHHHHHHHccHHHHHHhCCc---cccccccCCCCCCChhHHHHHHH
Q 011713 311 SIIPQEPT---LF-RGSVRTNLDPL--GMYSDN-EIWEAMEKCQLKATISRLPM---LLDSSVSDEGENWSVGQRQLFCL 380 (479)
Q Consensus 311 ~~V~Q~~~---lF-~gTi~eNi~~~--~~~~~~-~i~~a~~~a~l~~~i~~lp~---G~~T~vge~G~~LSgGQrQRlai 380 (479)
+|||-|-- || .-||++|+.+. ...+.- -+...-+..-..+++.+|.- +.+.++ .+||||-+|++.|
T Consensus 337 ~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v----~~LSGGNQQKVvl 412 (500)
T COG1129 337 AYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI----GTLSGGNQQKVVL 412 (500)
T ss_pred EeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh----hcCCchhhhhHHH
Confidence 99998653 55 45999999743 111111 23444555556677777742 334444 5799999999999
Q ss_pred HHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChh
Q 011713 381 GRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPS 452 (479)
Q Consensus 381 ARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~ 452 (479)
||.|..+|+||||||||-++|.-+.+.|++.|+++. +|+++|+||-.+..+- .||||+||.+|+|+..=+.+
T Consensus 413 arwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 413 ARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred HHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccc
Confidence 999999999999999999999999999999999875 5899999999998765 79999999999999743333
No 385
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=2.4e-27 Score=258.99 Aligned_cols=198 Identities=28% Similarity=0.359 Sum_probs=167.8
Q ss_pred CCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEECCeecCCCCHHHHhccceEEcCCCc-ccc
Q 011713 245 NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--PENGRILIDGLDICSMGLKDLRTKLSIIPQEPT-LFR 321 (479)
Q Consensus 245 ~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~--p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~-lF~ 321 (479)
+.+..|+||+=-++||..+|++|+||||||||+++|+|=-. ..+|+|+|||.+..+ +..++.+|||.|++. +=.
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 44569999999999999999999999999999999998653 258999999999876 788999999999764 656
Q ss_pred ccHHhhcCCC------CCCCHH----HHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCC-CE
Q 011713 322 GSVRTNLDPL------GMYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN-RI 390 (479)
Q Consensus 322 gTi~eNi~~~------~~~~~~----~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p-~i 390 (479)
-||||-|.+. .+.+++ -++++++..++.++- |..||.-|..||..||.||.||=-|+.|| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 6999999531 234433 356677777766554 45689999999999999999999999999 89
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchh--hhcCCEEEEEeC-CEEEEecChh
Q 011713 391 LILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPT--ITDSDMVMVLSY-GELVEYDLPS 452 (479)
Q Consensus 391 liLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~--i~~~D~I~vl~~-G~Ive~G~~~ 452 (479)
|.||||||+||+++...|++.++++. .|+|+++.=|.+|. .+..|+++.|++ |+.|-.|+..
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 99999999999999999999999875 59999999999985 688999999965 8899887643
No 386
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.94 E-value=5.1e-27 Score=225.45 Aligned_cols=182 Identities=17% Similarity=0.190 Sum_probs=134.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCee-c------CCCCHHHHhccceEEcCCC--ccccccHHhhcC--
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD-I------CSMGLKDLRTKLSIIPQEP--TLFRGSVRTNLD-- 329 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~-i------~~~~~~~lr~~i~~V~Q~~--~lF~gTi~eNi~-- 329 (479)
..++|+||||||||||+..|.++..+..|++..++.+ + ...+.....-.+.+..|++ .++..+++++-.
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998888888765421 1 1111223333455555653 345555555432
Q ss_pred -C-CCCCCHHHHHHHHHHccHHHHHHh--CCccccccccCC---------CCCCChhHHHHHHHHHHhhcC----CCEEE
Q 011713 330 -P-LGMYSDNEIWEAMEKCQLKATISR--LPMLLDSSVSDE---------GENWSVGQRQLFCLGRVLLKR----NRILI 392 (479)
Q Consensus 330 -~-~~~~~~~~i~~a~~~a~l~~~i~~--lp~G~~T~vge~---------G~~LSgGQrQRlaiARAll~~----p~ili 392 (479)
. +...+.+++.+.++.++++.+... +|+|.=+.+.+. ...||||||||++||||++.+ |+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 1 224678888899999998533211 233433333332 267999999999999999864 89999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEccCchhhhcCCEEEEEeC
Q 011713 393 LDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITDSDMVMVLSY 442 (479)
Q Consensus 393 LDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaHrl~~i~~~D~I~vl~~ 442 (479)
|||||++||+.+...+.+.|++..+ +.|+|+|||+.+.++.||++++|..
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 9999999999999999999998865 7899999999999999999999864
No 387
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=1.2e-25 Score=247.32 Aligned_cols=216 Identities=25% Similarity=0.331 Sum_probs=147.4
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHh------ccCC----C-----------CCce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF------RLVE----P-----------ENGR 290 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~------g~~~----p-----------~~G~ 290 (479)
.++++|++. ..|+|+||+|++|+.++|+|+||||||||++=.+ ++.. | -.--
T Consensus 612 ~l~l~~~~~-------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (924)
T TIGR00630 612 FLTLKGARE-------NNLKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKV 684 (924)
T ss_pred eEEEEeCcc-------CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcccccCCCCcCccccccCCCce
Confidence 488888862 2599999999999999999999999999998222 1111 1 1123
Q ss_pred EEECCeecCCCC----------HHHHhccceEEcC------CCccccccH--------------HhhcCC----------
Q 011713 291 ILIDGLDICSMG----------LKDLRTKLSIIPQ------EPTLFRGSV--------------RTNLDP---------- 330 (479)
Q Consensus 291 I~i~g~~i~~~~----------~~~lr~~i~~V~Q------~~~lF~gTi--------------~eNi~~---------- 330 (479)
|.||-.++..-+ .+.+|+.++=.|+ .+-.|+-.. .-++.+
T Consensus 685 v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 764 (924)
T TIGR00630 685 IHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEV 764 (924)
T ss_pred EEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccCCCC
Confidence 555555553221 2356666665544 233343211 100000
Q ss_pred --CCCCCHHH---------HHHHHH--HccHHHHHHhCCc-----------cccc-cccCCCCCCChhHHHHHHHHHHhh
Q 011713 331 --LGMYSDNE---------IWEAME--KCQLKATISRLPM-----------LLDS-SVSDEGENWSVGQRQLFCLGRVLL 385 (479)
Q Consensus 331 --~~~~~~~~---------i~~a~~--~a~l~~~i~~lp~-----------G~~T-~vge~G~~LSgGQrQRlaiARAll 385 (479)
+..+.+|- |-+++. ...+.+|+..+|. |++. .++.....|||||+||++|||+|.
T Consensus 765 C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~~~~~~i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~ 844 (924)
T TIGR00630 765 CKGKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELS 844 (924)
T ss_pred cCCceeChHHHhceeCCCCHHHHhCCcHHHHHHHHHhccchhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHh
Confidence 00111110 111111 0111223333321 5554 467888899999999999999999
Q ss_pred c---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcCCEEEEE------eCCEEEEecChhhh
Q 011713 386 K---RNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVL------SYGELVEYDLPSNL 454 (479)
Q Consensus 386 ~---~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl------~~G~Ive~G~~~eL 454 (479)
+ +|+++||||||++||+.+...+.+.|+++. ++.|+|+|+|++..++.||+|++| ++|+|++.|+++++
T Consensus 845 ~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 845 KRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 7 599999999999999999999999998875 489999999999999999999999 79999999999886
No 388
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.93 E-value=7.9e-25 Score=218.36 Aligned_cols=213 Identities=25% Similarity=0.383 Sum_probs=174.4
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeec-CCCCHHHHhc-
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI-CSMGLKDLRT- 308 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i-~~~~~~~lr~- 308 (479)
.-++++|++..-+.. -+.+++|||++++||+++|.|-+|-|-+-|+.+|+|+..|.+|+|.++|.|+ ..+++..+|+
T Consensus 256 ~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 256 VVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred eEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 358999999865432 3579999999999999999999999999999999999999999999999997 6778887766
Q ss_pred cceEEcCCCc----cccccHHhhcCCCC--C--------CCHHHHHHHHHHccHHHHHHhC---CccccccccCCCCCCC
Q 011713 309 KLSIIPQEPT----LFRGSVRTNLDPLG--M--------YSDNEIWEAMEKCQLKATISRL---PMLLDSSVSDEGENWS 371 (479)
Q Consensus 309 ~i~~V~Q~~~----lF~gTi~eNi~~~~--~--------~~~~~i~~a~~~a~l~~~i~~l---p~G~~T~vge~G~~LS 371 (479)
-++|||.|.+ ..+-|+.||+.+.. . .+..++.+.++. .++++ +.+-++++ .+||
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~-----li~~fdVr~~~~~~~a----~~LS 405 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARE-----LIEEFDVRAPSPDAPA----RSLS 405 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHH-----HHHHcCccCCCCCcch----hhcC
Confidence 5999999884 56679999995421 1 233444443333 23322 33444444 5799
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEec
Q 011713 372 VGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYD 449 (479)
Q Consensus 372 gGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G 449 (479)
||..||+-+||-+.++|++||..+||-+||..+.+.|++.|.+.. +|+.+++||-.|..+- -||||.||.+|+|+...
T Consensus 406 GGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~ 485 (501)
T COG3845 406 GGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIV 485 (501)
T ss_pred CcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccc
Confidence 999999999999999999999999999999999999999887754 6899999999999764 59999999999999877
Q ss_pred Chhh
Q 011713 450 LPSN 453 (479)
Q Consensus 450 ~~~e 453 (479)
++++
T Consensus 486 ~~~~ 489 (501)
T COG3845 486 PPEE 489 (501)
T ss_pred cccc
Confidence 7665
No 389
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.1e-24 Score=217.27 Aligned_cols=213 Identities=18% Similarity=0.244 Sum_probs=174.2
Q ss_pred CccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhcc
Q 011713 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (479)
Q Consensus 230 ~~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~ 309 (479)
+..+++.+|+|.|+++.++.+.++++.+..-+++++||++|+||||+++++.+-..|..|-+-+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 346999999999988876799999999999999999999999999999999999999999998876 668
Q ss_pred ceEEcCCCccc-cccHH--hhc-CCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhh
Q 011713 310 LSIIPQEPTLF-RGSVR--TNL-DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 385 (479)
Q Consensus 310 i~~V~Q~~~lF-~gTi~--eNi-~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll 385 (479)
|+|-.|.-.=| +-.+- |-+ ..++.-++||+++.|...|+...+..-| -..||||||-|+++|-..+
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTW 498 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhc
Confidence 88888866533 22221 111 1123348999999999988876554432 1569999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCEEEE-ecChhhhhccCchHHH
Q 011713 386 KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGELVE-YDLPSNLMKTNSAFSK 463 (479)
Q Consensus 386 ~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive-~G~~~eLl~~~g~y~~ 463 (479)
.+|.+|+|||||..||.++-..+-++|+++. --||+|||..+.++. |+.+++.++|++.. .|+ -..|++
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~-------~~~yKk 569 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGG-------IDKYKK 569 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeEEEcCCcEEeeecc-------HHHHHH
Confidence 9999999999999999999999999998863 469999999999987 99999999999975 222 124777
Q ss_pred HHHHHHHhh
Q 011713 464 LVAEYRSSY 472 (479)
Q Consensus 464 l~~~~~~~~ 472 (479)
+...+.+..
T Consensus 570 l~~~e~~~~ 578 (582)
T KOG0062|consen 570 LLGAELRAK 578 (582)
T ss_pred HHHHHHhhh
Confidence 777665544
No 390
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.92 E-value=5e-24 Score=213.60 Aligned_cols=219 Identities=19% Similarity=0.241 Sum_probs=147.5
Q ss_pred CccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhcc
Q 011713 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (479)
Q Consensus 230 ~~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~ 309 (479)
...|.++|++++|.+. ++++|..|++++|++++|+|++||||||+++.+.|--.|..-++-+--.+ +++.+..+..-
T Consensus 73 s~dvk~~sls~s~~g~--~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls-~e~~ps~~~av 149 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHGV--ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLS-REIEPSEKQAV 149 (614)
T ss_pred cccceeeeeeeccCCc--eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhc-ccCCCchHHHH
Confidence 3469999999999753 58999999999999999999999999999999999888855444321100 11111111110
Q ss_pred ceEEcCCCccccccHH-------hhcCCC-CCC---CHHHHHHHHHHccHHHHHHh----C-Ccccccc-ccCCCCCCCh
Q 011713 310 LSIIPQEPTLFRGSVR-------TNLDPL-GMY---SDNEIWEAMEKCQLKATISR----L-PMLLDSS-VSDEGENWSV 372 (479)
Q Consensus 310 i~~V~Q~~~lF~gTi~-------eNi~~~-~~~---~~~~i~~a~~~a~l~~~i~~----l-p~G~~T~-vge~G~~LSg 372 (479)
|..+.+..+.+ |++.-. ++. .-+++++-+...+.+.+=.+ | ..|.... ....-.+|||
T Consensus 150 -----~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~Sg 224 (614)
T KOG0927|consen 150 -----QAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSG 224 (614)
T ss_pred -----HHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCc
Confidence 11111111111 222110 110 11122222222222211110 0 1122222 2233468999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCE-EEEecC
Q 011713 373 GQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGE-LVEYDL 450 (479)
Q Consensus 373 GQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~-Ive~G~ 450 (479)
|||.|++|||||+.+|++|+|||||.+||.++-.-+.+.|.+.... |+++++|.-.++.. |..|+.|++++ +...|+
T Consensus 225 GwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gn 303 (614)
T KOG0927|consen 225 GWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGN 303 (614)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeecCC
Confidence 9999999999999999999999999999999999998888876332 89999999999977 99999999999 668899
Q ss_pred hhhhhcc
Q 011713 451 PSNLMKT 457 (479)
Q Consensus 451 ~~eLl~~ 457 (479)
+++.+..
T Consensus 304 ydqy~~t 310 (614)
T KOG0927|consen 304 YDQYVKT 310 (614)
T ss_pred HHHHhhH
Confidence 9998864
No 391
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=2.4e-24 Score=199.64 Aligned_cols=172 Identities=17% Similarity=0.208 Sum_probs=117.9
Q ss_pred eeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCC-CHHHHhccceEEcCCCccccccHHhhc
Q 011713 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM-GLKDLRTKLSIIPQEPTLFRGSVRTNL 328 (479)
Q Consensus 250 L~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~-~~~~lr~~i~~V~Q~~~lF~gTi~eNi 328 (479)
++++++++.+| ..+|+||||||||||+..|.-.+..... ....|..+.++ ....-...|.+++|+.-++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 35677777776 7799999999999999998744332211 01112211110 00111345777877766554 2
Q ss_pred CCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh----hcCCCEEEEeCCCCCCCHHH
Q 011713 329 DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL----LKRNRILILDEATASIDSAT 404 (479)
Q Consensus 329 ~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl----l~~p~iliLDE~TSaLD~~t 404 (479)
.....+.++ +.+++.. .+-.+. ...+||+|||||++||||+ +.+|+++||||||++||+.+
T Consensus 84 -~~~~~~~~~---------~~~~l~~-~~~~~~----~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~ 148 (198)
T cd03276 84 -PLCVLSQDM---------ARSFLTS-NKAAVR----DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVN 148 (198)
T ss_pred -cCCHHHHHH---------HHHHhcc-ccccCC----cccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHH
Confidence 111111223 3334433 222333 3458999999999999999 68999999999999999999
Q ss_pred HHHHHHHHHHHCC----CcEEEEEccCchhhhcCCEEEEEeCCE
Q 011713 405 DAILQRIIREEFP----GSTVITIAHRVPTITDSDMVMVLSYGE 444 (479)
Q Consensus 405 e~~i~~~l~~~~~----~~TvI~IaHrl~~i~~~D~I~vl~~G~ 444 (479)
...+.+.|.+..+ ++|+|++||++..+..+|+|-||..|+
T Consensus 149 ~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 149 RKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 9999999888642 358999999999999999999998754
No 392
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=4.9e-24 Score=207.88 Aligned_cols=197 Identities=22% Similarity=0.285 Sum_probs=152.9
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
-+-+.||+|.|++. .|.+++++|-|.--.+||||||+|.|||||++||.|-++|+.|+.+=|. |=+||
T Consensus 586 vLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~iG 653 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRIG 653 (807)
T ss_pred eeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeeee
Confidence 46789999999865 4599999999999999999999999999999999999999999876543 44688
Q ss_pred EEcCCCc--c-ccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 011713 312 IIPQEPT--L-FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (479)
Q Consensus 312 ~V~Q~~~--l-F~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p 388 (479)
+.-|..- | -..|-.|.+.-.-+.+.++.+.++-..||..-. +|. .-..||||||-|+++|-.-++.|
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHA-------HTi---kikdLSGGQKaRValaeLal~~P 723 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHA-------HTI---KIKDLSGGQKARVALAELALGGP 723 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhcc-------ceE---eeeecCCcchHHHHHHHHhcCCC
Confidence 8877542 1 223555555322234566677777776664322 222 12579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCC-EEEEEeCCEEEE-ecChh
Q 011713 389 RILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSD-MVMVLSYGELVE-YDLPS 452 (479)
Q Consensus 389 ~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D-~I~vl~~G~Ive-~G~~~ 452 (479)
+||||||||.+||.++-..+-++|+++ +-.||+|||.-..+...| ..+|+++-.|-| .|.++
T Consensus 724 DvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFe 787 (807)
T KOG0066|consen 724 DVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFE 787 (807)
T ss_pred CEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhhccccHH
Confidence 999999999999999999999999987 457999999988876644 466777665543 34443
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.6e-24 Score=216.08 Aligned_cols=202 Identities=22% Similarity=0.307 Sum_probs=148.4
Q ss_pred CccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhcc
Q 011713 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (479)
Q Consensus 230 ~~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~ 309 (479)
..+|..++.+.+|++ +..|++-++++..|.+.++||++|+|||||++.|.. |.|..-.++ +++|.-
T Consensus 78 ~~Di~~~~fdLa~G~--k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~ 143 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG--KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGD 143 (582)
T ss_pred ccceeeeeeeeeecc--hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheecc
Confidence 357999999999974 458999999999999999999999999999999998 444332211 111111
Q ss_pred ceEEcCCCccccccHHhhcCCCC-----CCCHHHHHH-HHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 011713 310 LSIIPQEPTLFRGSVRTNLDPLG-----MYSDNEIWE-AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (479)
Q Consensus 310 i~~V~Q~~~lF~gTi~eNi~~~~-----~~~~~~i~~-a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA 383 (479)
-....|+ .+=.+|-+.-+.... ..+-++|.. ++.-.|..+..+..|- ..||||.|-|+|||||
T Consensus 144 ~t~~~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt----------~slSGGWrMrlaLARA 212 (582)
T KOG0062|consen 144 DTEALQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT----------KSLSGGWRMRLALARA 212 (582)
T ss_pred chHHHhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc----------cccCcchhhHHHHHHH
Confidence 1111111 122223222221111 113456665 7777777777766663 5799999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCEEE-EecChhhhhccC
Q 011713 384 LLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGELV-EYDLPSNLMKTN 458 (479)
Q Consensus 384 ll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Iv-e~G~~~eLl~~~ 458 (479)
++.+||||+|||||..||..+-.-+.+.|..+. .|+|+|||+-..+.. |.-|+.+++-|+- ..|++++..+.+
T Consensus 213 lf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k 287 (582)
T KOG0062|consen 213 LFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTK 287 (582)
T ss_pred HhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhh
Confidence 999999999999999999999888888887753 899999999999977 8889999887773 577877776644
No 394
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.90 E-value=5.4e-24 Score=202.60 Aligned_cols=192 Identities=17% Similarity=0.239 Sum_probs=141.3
Q ss_pred EEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEE--ECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCC
Q 011713 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL--IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG 332 (479)
Q Consensus 255 l~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~--i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~ 332 (479)
+.+.+||+++|+|++|+|||||++.+.+..+...+++. +-...-+..+..++.+.+. ..++-.+. +
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~-----~~~v~~~~-------~ 78 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVK-----GEVIASTF-------D 78 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhc-----cEEEEecC-------C
Confidence 57889999999999999999999999999887644333 2222222255666655550 00111110 0
Q ss_pred CCCHHH------HHHHHH---Hcc-----HHHHHHhCCccccccccCCCCCCChhH--------HHHHHHHHHhhcCCCE
Q 011713 333 MYSDNE------IWEAME---KCQ-----LKATISRLPMLLDSSVSDEGENWSVGQ--------RQLFCLGRVLLKRNRI 390 (479)
Q Consensus 333 ~~~~~~------i~~a~~---~a~-----l~~~i~~lp~G~~T~vge~G~~LSgGQ--------rQRlaiARAll~~p~i 390 (479)
.....+ +.+.++ ..| +-|.+.++|+++++.+++.|..+|||| +||+++||+++++++|
T Consensus 79 ~~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsI 158 (249)
T cd01128 79 EPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSL 158 (249)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCce
Confidence 111111 111111 112 225578999999999999999999999 9999999999999999
Q ss_pred EEEeCCCCCCCHHHHHH-HHHHHHHHC-CCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHH
Q 011713 391 LILDEATASIDSATDAI-LQRIIREEF-PGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAE 467 (479)
Q Consensus 391 liLDE~TSaLD~~te~~-i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~ 467 (479)
.+| ||+.+|+.+|.. ++ +.+.. .++|.|++|||+++..++|.|.||+.|++ |++|+..++.|+.+++.
T Consensus 159 t~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~~~~~~~~~~~ 228 (249)
T cd01128 159 TII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLDPEELQRMWLL 228 (249)
T ss_pred EEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCCHHHHHHHHHH
Confidence 999 999999877653 43 34443 57999999999999999999999999997 88999888889888653
No 395
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.90 E-value=4.4e-23 Score=183.86 Aligned_cols=219 Identities=23% Similarity=0.386 Sum_probs=172.9
Q ss_pred EEEeEEEEe--CCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC----CCCceEEECCeecCCCCHHHHh
Q 011713 234 ELEDLKVRY--RPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE----PENGRILIDGLDICSMGLKDLR 307 (479)
Q Consensus 234 ~~~~vsf~Y--~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~----p~~G~I~i~g~~i~~~~~~~lr 307 (479)
.++|++..+ +...-.+.+++|++.+.||.-++||+||||||-++|.++|... .+.-+..+|++|+-++++..-|
T Consensus 5 DIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RR 84 (330)
T COG4170 5 DIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR 84 (330)
T ss_pred cccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhh
Confidence 344444433 2333358999999999999999999999999999999999865 3556677899999999999888
Q ss_pred cc----ceEEcCCCccccc---c----HHhhcC---CCC------CCCHHHHHHHHHHccHHH--HH-HhCCcccccccc
Q 011713 308 TK----LSIIPQEPTLFRG---S----VRTNLD---PLG------MYSDNEIWEAMEKCQLKA--TI-SRLPMLLDSSVS 364 (479)
Q Consensus 308 ~~----i~~V~Q~~~lF~g---T----i~eNi~---~~~------~~~~~~i~~a~~~a~l~~--~i-~~lp~G~~T~vg 364 (479)
+- |++++|||.-.-+ + +-+||- +-+ .-...+..+.+.++|+.| .| .+.|
T Consensus 85 k~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP-------- 156 (330)
T COG4170 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP-------- 156 (330)
T ss_pred hhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc--------
Confidence 74 6899999975432 2 456772 211 123456677888898854 23 3444
Q ss_pred CCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhh-cCCEEEEEe
Q 011713 365 DEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTIT-DSDMVMVLS 441 (479)
Q Consensus 365 e~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~~D~I~vl~ 441 (479)
..|--|+-|++.||-|+..+|++||-||||.++|+.|..+|...+.+.- .+.|+++|+|++.++. .||+|-||-
T Consensus 157 ---~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlY 233 (330)
T COG4170 157 ---YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLY 233 (330)
T ss_pred ---chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEE
Confidence 3466788999999999999999999999999999999999999987764 4689999999999985 499999999
Q ss_pred CCEEEEecChhhhhc-cCchHHH
Q 011713 442 YGELVEYDLPSNLMK-TNSAFSK 463 (479)
Q Consensus 442 ~G~Ive~G~~~eLl~-~~g~y~~ 463 (479)
=|+-+|.+.-++|++ .+-.|.+
T Consensus 234 CGQ~~ESa~~e~l~~~PhHPYTq 256 (330)
T COG4170 234 CGQTVESAPSEELVTMPHHPYTQ 256 (330)
T ss_pred ecccccccchhHHhcCCCCchHH
Confidence 999999999999997 4445544
No 396
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.89 E-value=5.7e-23 Score=186.93 Aligned_cols=85 Identities=19% Similarity=0.245 Sum_probs=78.5
Q ss_pred HHhCCccccccccCCCCCCChhHHHHHHHHHHhh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEcc
Q 011713 352 ISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL----KRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAH 426 (479)
Q Consensus 352 i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll----~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaH 426 (479)
+..+|+|-.|++ ||||||||++|||++. .+|+++|+||||++||+...+.+.+.+.+..+ ++|+|+|||
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 667899999988 9999999999999985 79999999999999999999999999988754 589999999
Q ss_pred CchhhhcCCEEEEEeC
Q 011713 427 RVPTITDSDMVMVLSY 442 (479)
Q Consensus 427 rl~~i~~~D~I~vl~~ 442 (479)
+++.+..+|+++++++
T Consensus 157 ~~~~~~~adrvi~i~~ 172 (178)
T cd03239 157 KKEMFENADKLIGVLF 172 (178)
T ss_pred CHHHHhhCCeEEEEEE
Confidence 9999999999999976
No 397
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.89 E-value=7.6e-23 Score=201.13 Aligned_cols=179 Identities=23% Similarity=0.372 Sum_probs=134.0
Q ss_pred EEEEeCCCCCceeeeeeEEee-----CCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 238 LKVRYRPNTPLVLKGITCTFK-----EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 238 vsf~Y~~~~~~vL~~isl~i~-----~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
--+.|++-. ..+.++.|++. .||.++++||+|-||||++++|+|..+|++|. ..++ +++|
T Consensus 341 ~lv~y~~~~-k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSy 405 (591)
T COG1245 341 TLVEYPDLK-KTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSY 405 (591)
T ss_pred eeeecchhe-eecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEee
Confidence 334554332 25666777655 57889999999999999999999999999998 2222 6899
Q ss_pred EcCCCc-cccccHHhhcCCC-CC-CCHHHH-HHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 011713 313 IPQEPT-LFRGSVRTNLDPL-GM-YSDNEI-WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (479)
Q Consensus 313 V~Q~~~-lF~gTi~eNi~~~-~~-~~~~~i-~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p 388 (479)
=||-.. -|+||+++-+.-. +. +.+.-+ .+.++-.++++. +|.+ -..|||||.||+|||-||.+++
T Consensus 406 KPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i-------~e~~----v~~LSGGELQRvaIaa~L~reA 474 (591)
T COG1245 406 KPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDL-------LERP----VDELSGGELQRVAIAAALSREA 474 (591)
T ss_pred cceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHH-------Hhcc----cccCCchhHHHHHHHHHhcccc
Confidence 999554 4899999877421 11 111111 122333333332 2333 3579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhc-CCEEEEEeC
Q 011713 389 RILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSY 442 (479)
Q Consensus 389 ~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-~D~I~vl~~ 442 (479)
++++||||++.||.+..-.+-++|++.. .++|.++|-|++..+.. +||++|.+.
T Consensus 475 DlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 475 DLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred CEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 9999999999999998888888888754 47899999999999887 899999964
No 398
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.88 E-value=2.3e-21 Score=172.39 Aligned_cols=208 Identities=24% Similarity=0.280 Sum_probs=151.4
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCC-CCH------
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS-MGL------ 303 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~-~~~------ 303 (479)
..|+++++.|+|+..+ |++-|+|+++|+|.+..+||.+|||||||+|+|.|-.-...|.|.+.|.+--. -++
T Consensus 12 ~aievsgl~f~y~~~d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVSD-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred ceEEEeccEEecccCC-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 4699999999998765 59999999999999999999999999999999999998888999999965321 111
Q ss_pred ----HHHhccceEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHH--HhCCccccccccCCCCCCChhHHHH
Q 011713 304 ----KDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATI--SRLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 304 ----~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i--~~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
.+|++..++-- |..|- .+++-+++. .-++-.++- +.|-+=+|-.+.=+-..+|-|||+|
T Consensus 91 ~YLGgeW~~~~~~ag-evplq-----------~D~sae~mi---fgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRR 155 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAG-EVPLQ-----------GDISAEHMI---FGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRR 155 (291)
T ss_pred eEecccccccccccc-ccccc-----------ccccHHHHH---hhccCCChhHhhhhhhheeccceEEEeeccccchhh
Confidence 12333332222 11111 122222221 111111110 1111123333333446789999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhh
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eL 454 (479)
+.|+..||+.=++|+|||.|-.||......+.+-+++.. +++|++..||=...++. +.+++.|.+|+++..-++++.
T Consensus 156 VQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i 235 (291)
T KOG2355|consen 156 VQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKI 235 (291)
T ss_pred hHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchh
Confidence 999999999999999999999999999999999998754 58999999999998764 899999999999985544443
No 399
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=1.3e-21 Score=183.24 Aligned_cols=180 Identities=15% Similarity=0.159 Sum_probs=115.6
Q ss_pred eeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCcc---cccc----
Q 011713 251 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL---FRGS---- 323 (479)
Q Consensus 251 ~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~l---F~gT---- 323 (479)
+++.+++.+| ..+|+|+||||||||+..|.-..-...... . +.-...++.+ .=.++..+ |...
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~---~---r~~~~~~~i~---~g~~~~~v~~~~~~~~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL---G---RAKKVGEFVK---RGCDEGTIEIELYGNPGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc---c---cccCHHHHhh---CCCCcEEEEEEEEeCCCcc
Confidence 4455555444 558999999999999998865442211100 0 0001112111 10111111 1111
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHH----hhcCCCEEEEeCCCCC
Q 011713 324 VRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV----LLKRNRILILDEATAS 399 (479)
Q Consensus 324 i~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA----ll~~p~iliLDE~TSa 399 (479)
..+|++. ..+.+.+.+++..... +.+..+|.+.+.. ..+...||||||||+.+|++ ++.+|+++|+||||++
T Consensus 85 ~~~n~~~--~~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~ 160 (213)
T cd03277 85 QVDNLCQ--FLPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQG 160 (213)
T ss_pred ccCCceE--EEchHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEeccccc
Confidence 2344431 1355666677666655 5566777766532 44667899999999887755 4589999999999999
Q ss_pred CCHHHHHHHHHHHHHHCC--C-cEEEEEccCchhh-hcCC--EEEEEeCCE
Q 011713 400 IDSATDAILQRIIREEFP--G-STVITIAHRVPTI-TDSD--MVMVLSYGE 444 (479)
Q Consensus 400 LD~~te~~i~~~l~~~~~--~-~TvI~IaHrl~~i-~~~D--~I~vl~~G~ 444 (479)
||+.+.+.+.+.+.+..+ + .|+|+|||++... ..|| +|++|++|+
T Consensus 161 LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 161 MDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred CCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 999999999999988754 3 4799999998554 4465 788888776
No 400
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.5e-21 Score=190.50 Aligned_cols=77 Identities=17% Similarity=0.124 Sum_probs=71.5
Q ss_pred CCChhHHHHHHHHHHhhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCE
Q 011713 369 NWSVGQRQLFCLGRVLLK----RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGE 444 (479)
Q Consensus 369 ~LSgGQrQRlaiARAll~----~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~ 444 (479)
.|||||+||++|||+++. +|+++||||||++||+.+...+.+.+.+..+++|+|+|||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 499999999999997654 9999999999999999999999999999888899999999999989999999999875
Q ss_pred E
Q 011713 445 L 445 (479)
Q Consensus 445 I 445 (479)
.
T Consensus 250 ~ 250 (276)
T cd03241 250 E 250 (276)
T ss_pred C
Confidence 4
No 401
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.86 E-value=1.3e-21 Score=181.89 Aligned_cols=145 Identities=16% Similarity=0.151 Sum_probs=108.3
Q ss_pred eeeeeEEeeCCc-EEEEEcCCCCcHHHHHHHHh--------ccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccc
Q 011713 250 LKGITCTFKEGT-RVGVVGRTGSGKTTLISALF--------RLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF 320 (479)
Q Consensus 250 L~~isl~i~~Ge-~vaivG~sGsGKSTL~~lL~--------g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF 320 (479)
.-++||++++|+ .++|+||||||||||++.+. |++-|....+ .++|+.|....+
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~~l 79 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFADI 79 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEEec
Confidence 457999999996 69999999999999999998 6555532111 233333331111
Q ss_pred cccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCC
Q 011713 321 RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASI 400 (479)
Q Consensus 321 ~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaL 400 (479)
. .++ .+.++-..+|+|+||+..|++++ .+|+++++||||+++
T Consensus 80 g-------------~~~------------------------~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~gl 121 (200)
T cd03280 80 G-------------DEQ------------------------SIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGT 121 (200)
T ss_pred C-------------chh------------------------hhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCC
Confidence 0 000 11122257999999999999985 899999999999999
Q ss_pred CHHHHHHHHH-HHHHHC-CCcEEEEEccCchhhhcCCEEEEEeCCEEEEec
Q 011713 401 DSATDAILQR-IIREEF-PGSTVITIAHRVPTITDSDMVMVLSYGELVEYD 449 (479)
Q Consensus 401 D~~te~~i~~-~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G 449 (479)
|+.+...+.. .++.+. .++|+|++||.....+.||++++|++|+++..+
T Consensus 122 D~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 122 DPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 9999777754 455543 378999999998777889999999999998663
No 402
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.84 E-value=5.9e-21 Score=209.27 Aligned_cols=204 Identities=26% Similarity=0.304 Sum_probs=168.5
Q ss_pred CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC---CCceEEECCeecCCCCHHHHhccceEEcCCCccccc-
Q 011713 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP---ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG- 322 (479)
Q Consensus 247 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p---~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~g- 322 (479)
..+|+|+|.-++||+.+-+.||.|||||||++.|+|-.+- ..|+|.+||.+.+++.. ++.++|.+|+...|..
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 3589999999999999999999999999999999997764 35699999999999877 8899999999888876
Q ss_pred cHHhhcCCC-----C-----CCCHHHHHHHHHHccHHHHHHhCCccccccccCCC-CCCChhHHHHHHHHHHhhcCCCEE
Q 011713 323 SVRTNLDPL-----G-----MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEG-ENWSVGQRQLFCLGRVLLKRNRIL 391 (479)
Q Consensus 323 Ti~eNi~~~-----~-----~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G-~~LSgGQrQRlaiARAll~~p~il 391 (479)
|+||-|.+. + +.++.|-.++.... .=-+-.|....||.||++. ...|||||.|+++|-++..+|+++
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~--~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~ 282 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDY--LLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASIL 282 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHH--HHHHhCchhhccceecccccccccCcccceeeeeeeeecCccee
Confidence 999999642 1 12223322111111 1113356678999999765 689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCch--hhhcCCEEEEEeCCEEEEecChhhhh
Q 011713 392 ILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVP--TITDSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 392 iLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~--~i~~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
.+||+|-+||+.|.-++.++|++..+ +.|.++.=|..+ +....|.|++|.+|+++-+|+.++.+
T Consensus 283 ~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 283 FWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred eeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence 99999999999999999999988653 677777777765 67889999999999999999988875
No 403
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.84 E-value=1.7e-20 Score=182.61 Aligned_cols=196 Identities=25% Similarity=0.439 Sum_probs=151.2
Q ss_pred CccEEEEeEEEEeCCC------------------------CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhcc--
Q 011713 230 HGRIELEDLKVRYRPN------------------------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL-- 283 (479)
Q Consensus 230 ~~~I~~~~vsf~Y~~~------------------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~-- 283 (479)
.+.+.|+|++..|... ..++|+|+||+|+||+.++|||+|||||||++++++|.
T Consensus 355 ~~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~ 434 (593)
T COG2401 355 EGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK 434 (593)
T ss_pred CCccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhh
Confidence 4568888888776321 13689999999999999999999999999999999985
Q ss_pred ------CCCCCceEEECCeecCCCCHHHHhccceEEcC--CCccccccHHhhcCCCCCC-CHHHHHHHHHHccHHHHHHh
Q 011713 284 ------VEPENGRILIDGLDICSMGLKDLRTKLSIIPQ--EPTLFRGSVRTNLDPLGMY-SDNEIWEAMEKCQLKATISR 354 (479)
Q Consensus 284 ------~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q--~~~lF~gTi~eNi~~~~~~-~~~~i~~a~~~a~l~~~i~~ 354 (479)
|.|++|.|.+--..++. .+|- ||.+=.-||.|-+. ... +-..-.+.++.+|+.|-+.
T Consensus 435 ~~~ee~y~p~sg~v~vp~nt~~a-----------~iPge~Ep~f~~~tilehl~--s~tGD~~~AveILnraGlsDAvl- 500 (593)
T COG2401 435 GRGEEKYRPDSGKVEVPKNTVSA-----------LIPGEYEPEFGEVTILEHLR--SKTGDLNAAVEILNRAGLSDAVL- 500 (593)
T ss_pred cccccccCCCCCceeccccchhh-----------ccCcccccccCchhHHHHHh--hccCchhHHHHHHHhhccchhhh-
Confidence 78999999875433322 2333 33332337777763 211 2233457888888877553
Q ss_pred CCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhh
Q 011713 355 LPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTIT 432 (479)
Q Consensus 355 lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~ 432 (479)
|-... ..||-|||-|..||+++...|.+++.||.-|.||+.|...+...|.++. .+.|.++||||.+.+.
T Consensus 501 ----yRr~f----~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~ 572 (593)
T COG2401 501 ----YRRKF----SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGN 572 (593)
T ss_pred ----hhccH----hhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHh
Confidence 22222 4699999999999999999999999999999999999999999998876 5899999999999886
Q ss_pred c--CCEEEEEeCCEEEE
Q 011713 433 D--SDMVMVLSYGELVE 447 (479)
Q Consensus 433 ~--~D~I~vl~~G~Ive 447 (479)
. -|+++.+.=|+...
T Consensus 573 AL~PD~li~vgYg~v~~ 589 (593)
T COG2401 573 ALRPDTLILVGYGKVPV 589 (593)
T ss_pred ccCCceeEEeecccccc
Confidence 5 59988887776543
No 404
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.84 E-value=9e-20 Score=190.79 Aligned_cols=225 Identities=28% Similarity=0.393 Sum_probs=153.4
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHH-----HHhccC-----CCC-----Cc------e
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLIS-----ALFRLV-----EPE-----NG------R 290 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~-----lL~g~~-----~p~-----~G------~ 290 (479)
.+++++++ . .=|+||+.+||-|..++|.|-||||||||++ .+.+.. +|. .| -
T Consensus 606 ~L~l~gA~-----~--nNLkni~v~iPLg~~t~VTGVSGSGKSTLIn~tL~~a~~~~l~~~~~~p~~~~~i~G~e~idkv 678 (935)
T COG0178 606 WLELKGAR-----R--NNLKNIDVEIPLGVFTCVTGVSGSGKSTLINDTLVPALARHLNGTKEEPGPYKKIEGLEHIDKV 678 (935)
T ss_pred eEEEeccc-----c--cCcccceeecccccEEEEEecCCCCHHHhHHHHHHHHHHHHhccCCCCCCCcceeechhhcCeE
Confidence 46666653 1 1499999999999999999999999999993 222221 111 12 2
Q ss_pred EEECCeecCCCC----------HHHHhccceEEcC------CCccccccHH--------------hhcCCCC--------
Q 011713 291 ILIDGLDICSMG----------LKDLRTKLSIIPQ------EPTLFRGSVR--------------TNLDPLG-------- 332 (479)
Q Consensus 291 I~i~g~~i~~~~----------~~~lr~~i~~V~Q------~~~lF~gTi~--------------eNi~~~~-------- 332 (479)
|.||--||..-+ .++.|+.++-.|. .+--|+-.+. =.+.|.+
T Consensus 679 I~IdQsPIGRTpRSNPATYtg~Fd~IR~lFA~tpeAK~rGyk~grFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~Cev 758 (935)
T COG0178 679 IDIDQSPIGRTPRSNPATYTGVFDDIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEV 758 (935)
T ss_pred EEecCCCCCCCCCCCccchhcchHHHHHHHhcChHHHHcCCCcccccccCCCcCCccccCCceEEEEeccCCCceeeCCC
Confidence 444444443322 2345555543333 1222322111 0110100
Q ss_pred ----CCCH---------HHHHHHHHH--ccHHHHHHhCC-----------ccccc-cccCCCCCCChhHHHHHHHHHHhh
Q 011713 333 ----MYSD---------NEIWEAMEK--CQLKATISRLP-----------MLLDS-SVSDEGENWSVGQRQLFCLGRVLL 385 (479)
Q Consensus 333 ----~~~~---------~~i~~a~~~--a~l~~~i~~lp-----------~G~~T-~vge~G~~LSgGQrQRlaiARAll 385 (479)
.+.+ .-|-++|.. ..+.+|.+..| -|+.. .+|.....|||||.|||-||.-|.
T Consensus 759 C~GkRYn~EtLev~ykGK~IadVL~MTveEA~~FF~~~p~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~ 838 (935)
T COG0178 759 CHGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELS 838 (935)
T ss_pred cCCcccccceEEEEECCccHHHHHhccHHHHHHHHhcchHHHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHh
Confidence 0111 123333332 23456666655 25553 578999999999999999999999
Q ss_pred cCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcCCEEEEE------eCCEEEEecChhhhh
Q 011713 386 KRN---RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVL------SYGELVEYDLPSNLM 455 (479)
Q Consensus 386 ~~p---~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl------~~G~Ive~G~~~eLl 455 (479)
+++ -++||||||.+|-.+--+++++.|.++. +|.|||+|-|.|..++.||+|+=| +.|+|+.+|||+|+.
T Consensus 839 k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva 918 (935)
T COG0178 839 KRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVA 918 (935)
T ss_pred hccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEEEcCCCCCCCCceEEEecCHHHHH
Confidence 998 8999999999999999889999988865 589999999999999999999998 789999999999999
Q ss_pred ccCchHHH
Q 011713 456 KTNSAFSK 463 (479)
Q Consensus 456 ~~~g~y~~ 463 (479)
+..+.|-.
T Consensus 919 ~~~~S~Tg 926 (935)
T COG0178 919 KVKASYTG 926 (935)
T ss_pred hCccchhH
Confidence 86555543
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.83 E-value=9.2e-20 Score=209.46 Aligned_cols=210 Identities=18% Similarity=0.244 Sum_probs=146.2
Q ss_pred eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHh------cc---CCCCCceEEECCeecCCCC----------HHHHhcc
Q 011713 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALF------RL---VEPENGRILIDGLDICSMG----------LKDLRTK 309 (479)
Q Consensus 249 vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~------g~---~~p~~G~I~i~g~~i~~~~----------~~~lr~~ 309 (479)
=|+|++++||-|..++|.|.||||||||++=.+ .+ ++.-+--|.||-.||..-+ .+.+|+-
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 489999999999999999999999999997443 11 1333445888877775433 3456666
Q ss_pred ceEEcC------CCcccccc--------------HHhhcCCCC------------CCCHH-----------------HHH
Q 011713 310 LSIIPQ------EPTLFRGS--------------VRTNLDPLG------------MYSDN-----------------EIW 340 (479)
Q Consensus 310 i~~V~Q------~~~lF~gT--------------i~eNi~~~~------------~~~~~-----------------~i~ 340 (479)
++-.|+ .+-.|+-. ++=++.|.+ .+.+| .+.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 654332 12222211 111111111 11111 111
Q ss_pred HHHHHc----cHHHHHHhCC-ccccc-cccCCCCCCChhHHHHHHHHHHhhcC---CCEEEEeCCCCCCCHHHHHHHHHH
Q 011713 341 EAMEKC----QLKATISRLP-MLLDS-SVSDEGENWSVGQRQLFCLGRVLLKR---NRILILDEATASIDSATDAILQRI 411 (479)
Q Consensus 341 ~a~~~a----~l~~~i~~lp-~G~~T-~vge~G~~LSgGQrQRlaiARAll~~---p~iliLDE~TSaLD~~te~~i~~~ 411 (479)
+|++-- .+..-++.|. -|+.. .+|+.-..|||||.|||-||.-|.++ +.++||||||.+|++..-+.+.+.
T Consensus 1665 ea~~~F~~~~~i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~ 1744 (1809)
T PRK00635 1665 EVAETFPFLKKIQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQ 1744 (1809)
T ss_pred HHHHHhhccHHHHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHH
Confidence 222111 1111111111 24443 57899999999999999999999976 789999999999999999999999
Q ss_pred HHHHC-CCcEEEEEccCchhhhcCCEEEEE------eCCEEEEecChhhhhccC
Q 011713 412 IREEF-PGSTVITIAHRVPTITDSDMVMVL------SYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 412 l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl------~~G~Ive~G~~~eLl~~~ 458 (479)
++++. .+.|+|+|.|++..++.||+|+-| +.|+|+..||++++.+..
T Consensus 1745 l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~ 1798 (1809)
T PRK00635 1745 LRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASK 1798 (1809)
T ss_pred HHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCC
Confidence 88864 589999999999999999999999 679999999999999754
No 406
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.82 E-value=8e-20 Score=164.10 Aligned_cols=135 Identities=24% Similarity=0.310 Sum_probs=100.2
Q ss_pred eEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce-EEcCCCccccccHHhhcCCCC
Q 011713 254 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS-IIPQEPTLFRGSVRTNLDPLG 332 (479)
Q Consensus 254 sl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~-~V~Q~~~lF~gTi~eNi~~~~ 332 (479)
++.+.++..+.|+|||||||||+++.+.-..-..+|.+.... +. +.+ .+|+...-|
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~------------ 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL------------ 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE------------
Confidence 444555679999999999999999997665555555444310 00 111 122222111
Q ss_pred CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc----CCCEEEEeCCCCCCCHHHHHHH
Q 011713 333 MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK----RNRILILDEATASIDSATDAIL 408 (479)
Q Consensus 333 ~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~----~p~iliLDE~TSaLD~~te~~i 408 (479)
.-+. .+||+||+||++|||++.. +|+++|||||++++|+.....+
T Consensus 72 --------------------------i~~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l 120 (162)
T cd03227 72 --------------------------IFTR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQAL 120 (162)
T ss_pred --------------------------ehhe-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 0000 1199999999999999987 7899999999999999999999
Q ss_pred HHHHHHHCC-CcEEEEEccCchhhhcCCEEEEEeC
Q 011713 409 QRIIREEFP-GSTVITIAHRVPTITDSDMVMVLSY 442 (479)
Q Consensus 409 ~~~l~~~~~-~~TvI~IaHrl~~i~~~D~I~vl~~ 442 (479)
.+.+.+... ++|+|++||+++....+|+++.|+.
T Consensus 121 ~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 121 AEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 998887643 5899999999999999999999964
No 407
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.80 E-value=1.6e-19 Score=177.97 Aligned_cols=188 Identities=26% Similarity=0.386 Sum_probs=129.6
Q ss_pred eEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCee-----cCCCCHHHHhc---
Q 011713 237 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD-----ICSMGLKDLRT--- 308 (479)
Q Consensus 237 ~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~-----i~~~~~~~lr~--- 308 (479)
++.-+|..+. ..|..+- ..++|+.++|+|++|-||||-+++|+|...|+=|+- ++-+ ++.+.-.+|..
T Consensus 79 e~vHRYg~Ng-FkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF~ 154 (591)
T COG1245 79 EVVHRYGVNG-FKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYFK 154 (591)
T ss_pred cceeeccCCc-eEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHHH
Confidence 4667886543 2344432 256899999999999999999999999999987753 2211 00000001000
Q ss_pred -----------cceEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHH
Q 011713 309 -----------KLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 309 -----------~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
++-||--=|-.+.|+++|=+. ++-+.-..++.++.| +++..+...-..||||+-||
T Consensus 155 ~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk-----------~~de~g~~devve~l--~L~nvl~r~v~~LSGGELQr 221 (591)
T COG1245 155 KLYEGELRAVHKPQYVDLIPKVVKGKVGELLK-----------KVDERGKFDEVVERL--GLENVLDRDVSELSGGELQR 221 (591)
T ss_pred HHHcCCcceecchHHHHHHHHHhcchHHHHHH-----------hhhhcCcHHHHHHHh--cchhhhhhhhhhcCchHHHH
Confidence 111111122233344333322 111112345556555 46666666678899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEccCchhhhc-CCEEEEEe
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITD-SDMVMVLS 441 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaHrl~~i~~-~D~I~vl~ 441 (479)
+|||-|++|+++++++|||||-||....-..-+.|+++.+ +++||+|-|+|+.+.. +|-|.++-
T Consensus 222 ~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 222 VAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 9999999999999999999999999988888888888887 6999999999999987 88887774
No 408
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.80 E-value=1.1e-19 Score=171.10 Aligned_cols=152 Identities=14% Similarity=0.117 Sum_probs=114.2
Q ss_pred CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce-EEcCCCccccccHH
Q 011713 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS-IIPQEPTLFRGSVR 325 (479)
Q Consensus 247 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~-~V~Q~~~lF~gTi~ 325 (479)
..+.+|+++++++|+.++|.|||||||||+++.+.- -.+..++| +||.+...+. +.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~~ 73 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--IV 73 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--cc
Confidence 468999999999999999999999999999999981 13455666 7777653222 22
Q ss_pred hhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh--hcCCCEEEEeCC---CCCC
Q 011713 326 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL--LKRNRILILDEA---TASI 400 (479)
Q Consensus 326 eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl--l~~p~iliLDE~---TSaL 400 (479)
+.+ +...++.+.+ ..++|.|++|+..+|+++ +.+|+++||||| |+++
T Consensus 74 ~~i--------------l~~~~l~d~~--------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~l 125 (222)
T cd03285 74 DCI--------------LARVGASDSQ--------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTY 125 (222)
T ss_pred cee--------------Eeeeccccch--------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChH
Confidence 222 1112221111 256899999999999999 899999999999 9999
Q ss_pred CHHHHH-HHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecC
Q 011713 401 DSATDA-ILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDL 450 (479)
Q Consensus 401 D~~te~-~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~ 450 (479)
|+.... .+.+.+.+ ..++|+|++||..+..+.||++..+++|++...++
T Consensus 126 D~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 126 DGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 998754 33355544 34799999999766666799999999999987654
No 409
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.1e-18 Score=169.93 Aligned_cols=189 Identities=20% Similarity=0.249 Sum_probs=117.9
Q ss_pred eeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC-----------------------------------------CCC
Q 011713 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----------------------------------------PEN 288 (479)
Q Consensus 250 L~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~-----------------------------------------p~~ 288 (479)
+++.++++.+| ..+|+|||||||||++..|.-+.. ...
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~ 90 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGG 90 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCc
Confidence 34566777776 588999999999999887643221 011
Q ss_pred ceEEECCeecCC-CCHHHHhccceEEcCCCccccccHHhhcCCC----CCCC--H----HHHHHHHHHccHHHHHHhCCc
Q 011713 289 GRILIDGLDICS-MGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL----GMYS--D----NEIWEAMEKCQLKATISRLPM 357 (479)
Q Consensus 289 G~I~i~g~~i~~-~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~----~~~~--~----~~i~~a~~~a~l~~~i~~lp~ 357 (479)
..+++||..++. -+...+-..|.+.|++..|+.++-.+-..+. .... - +++.+++++- .+. .+-|+
T Consensus 91 ~~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~--~~~-~~g~~ 167 (270)
T cd03242 91 RKARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQR--NAL-LKGPH 167 (270)
T ss_pred eEEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH--HHH-hCCCC
Confidence 245567766654 1222333446667777778855432222111 1111 1 1222222221 111 11355
Q ss_pred cccccccCCC----CCCChhHHHHHHHHHHhh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Q 011713 358 LLDSSVSDEG----ENWSVGQRQLFCLGRVLL---------KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITI 424 (479)
Q Consensus 358 G~~T~vge~G----~~LSgGQrQRlaiARAll---------~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~I 424 (479)
..+..+.-++ ..+|+||+|+++|||++. ++|+++||||||++||+.....+.+.+.+.. .++++
T Consensus 168 ~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~ 244 (270)
T cd03242 168 RDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVT 244 (270)
T ss_pred hhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEE
Confidence 5444443223 347999999999999974 7999999999999999999999999997652 45555
Q ss_pred ccCchhhhc-C---CEEEEEeCCEE
Q 011713 425 AHRVPTITD-S---DMVMVLSYGEL 445 (479)
Q Consensus 425 aHrl~~i~~-~---D~I~vl~~G~I 445 (479)
+|....+.. | ++|+.+++|+|
T Consensus 245 ~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 245 TTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred eCCchhccchhccCccEEEEeCcEE
Confidence 555444433 4 78999999986
No 410
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.76 E-value=5e-19 Score=144.95 Aligned_cols=75 Identities=20% Similarity=0.177 Sum_probs=71.5
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhh
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN 327 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eN 327 (479)
++|++++|++++||.++|+||||||||||++++. +|++.++|.|+..++.++.++.++++||+ +|++|||||
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 5899999999999999999999999999999986 89999999999999999999999999998 999999999
Q ss_pred cCC
Q 011713 328 LDP 330 (479)
Q Consensus 328 i~~ 330 (479)
|.+
T Consensus 75 i~~ 77 (107)
T cd00820 75 IFL 77 (107)
T ss_pred cee
Confidence 974
No 411
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.76 E-value=2.4e-18 Score=160.30 Aligned_cols=153 Identities=12% Similarity=0.102 Sum_probs=102.5
Q ss_pred eeEEeeCCcEEEEEcCCCCcHHHHHHHHhc-cCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCC
Q 011713 253 ITCTFKEGTRVGVVGRTGSGKTTLISALFR-LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL 331 (479)
Q Consensus 253 isl~i~~Ge~vaivG~sGsGKSTL~~lL~g-~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~ 331 (479)
.++++.+|++++|+|||||||||+++.+.+ .+.+..|...- ..+..+++..|....|. ..+++
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-----------~~~~~i~~~dqi~~~~~--~~d~i--- 85 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-----------AESASIPLVDRIFTRIG--AEDSI--- 85 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-----------ccccccCCcCEEEEEec--Ccccc---
Confidence 345556899999999999999999999994 33222232110 01223333333222221 11111
Q ss_pred CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 011713 332 GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRI 411 (479)
Q Consensus 332 ~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~ 411 (479)
.++-..+|++++| +..+.+.+.+|+++||||||+++|+.....+...
T Consensus 86 --------------------------------~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ 132 (202)
T cd03243 86 --------------------------------SDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYA 132 (202)
T ss_pred --------------------------------cCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHH
Confidence 1111334555554 6767788899999999999999999876655443
Q ss_pred -HHHHC-CCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhh
Q 011713 412 -IREEF-PGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 412 -l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eL 454 (479)
++... .++++|++||+...++.+|++..+++|++.+.++..++
T Consensus 133 ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 133 VLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 34332 47899999999999999999999999999988875444
No 412
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.75 E-value=2.3e-18 Score=159.55 Aligned_cols=144 Identities=17% Similarity=0.143 Sum_probs=96.2
Q ss_pred CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCcccc-ccHH
Q 011713 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVR 325 (479)
Q Consensus 247 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~-gTi~ 325 (479)
++|++|++++. |+.++|+||||||||||++.|.+..- +...|.++... .+++|...+|. -|++
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccch
Confidence 45888887765 79999999999999999999987542 22466655321 25667555665 4999
Q ss_pred hhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHH
Q 011713 326 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATD 405 (479)
Q Consensus 326 eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te 405 (479)
||+..+.....++..+ +.+.++.+. +++|+++|+||||+++|+...
T Consensus 78 d~l~~~~s~~~~e~~~------~~~iL~~~~----------------------------~~~p~llllDEp~~glD~~~~ 123 (199)
T cd03283 78 DDLRDGISYFYAELRR------LKEIVEKAK----------------------------KGEPVLFLLDEIFKGTNSRER 123 (199)
T ss_pred hccccccChHHHHHHH------HHHHHHhcc----------------------------CCCCeEEEEecccCCCCHHHH
Confidence 9997543222222211 222222221 079999999999999999986
Q ss_pred HHHHH-HHHHH-CCCcEEEEEccCchhhhcC---CEEEEE
Q 011713 406 AILQR-IIREE-FPGSTVITIAHRVPTITDS---DMVMVL 440 (479)
Q Consensus 406 ~~i~~-~l~~~-~~~~TvI~IaHrl~~i~~~---D~I~vl 440 (479)
..+.. .++.+ .++.|+|++||++..+... ++|-.+
T Consensus 124 ~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 124 QAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 65543 34443 2478999999999876543 455444
No 413
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.75 E-value=4.6e-18 Score=187.99 Aligned_cols=100 Identities=24% Similarity=0.308 Sum_probs=89.6
Q ss_pred ccccc-ccCCCCCCChhHHHHHHHHHHhhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc
Q 011713 358 LLDSS-VSDEGENWSVGQRQLFCLGRVLLKRN--RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD 433 (479)
Q Consensus 358 G~~T~-vge~G~~LSgGQrQRlaiARAll~~p--~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~ 433 (479)
|++.. ....-..|||||+||++|||||..+| ++|||||||++||+.....+.+.|+++. ++.|+|+|+|++..+..
T Consensus 477 GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~ 556 (943)
T PRK00349 477 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRA 556 (943)
T ss_pred ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 45432 45556789999999999999999997 9999999999999999999999998875 48999999999999999
Q ss_pred CCEEEEE------eCCEEEEecChhhhhcc
Q 011713 434 SDMVMVL------SYGELVEYDLPSNLMKT 457 (479)
Q Consensus 434 ~D~I~vl------~~G~Ive~G~~~eLl~~ 457 (479)
||+|++| ++|+|+..|+++++++.
T Consensus 557 aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 557 ADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred CCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 9999999 99999999999998764
No 414
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=2.1e-17 Score=192.21 Aligned_cols=119 Identities=18% Similarity=0.182 Sum_probs=105.2
Q ss_pred cccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH------HHHHHHHhhcCCCEEE
Q 011713 319 LFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ------LFCLGRVLLKRNRILI 392 (479)
Q Consensus 319 lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ------RlaiARAll~~p~ili 392 (479)
.|+||++|||.+.++++++ +.|++.++.++|+..+|.| ||.++.+| .||||||| |++||||++.+|++|+
T Consensus 1153 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il~ 1228 (1311)
T TIGR00606 1153 TYRGQDIEYIEIRSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGIIA 1228 (1311)
T ss_pred HcCccHHHHhhcCCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEEE
Confidence 4999999999985566666 7899999999999999999 99999886 89999999 9999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHC------CCcEEEEEccCchhhh------cCCEEEEEe
Q 011713 393 LDEATASIDSATDAILQRIIREEF------PGSTVITIAHRVPTIT------DSDMVMVLS 441 (479)
Q Consensus 393 LDE~TSaLD~~te~~i~~~l~~~~------~~~TvI~IaHrl~~i~------~~D~I~vl~ 441 (479)
|||||++||+.+...+.+.|..+. .+.|+|+|||++..+. .||+.|.+.
T Consensus 1229 lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606 1229 LDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLK 1289 (1311)
T ss_pred eeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeee
Confidence 999999999999998888887652 3689999999999875 467777663
No 415
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.73 E-value=1.2e-15 Score=146.42 Aligned_cols=182 Identities=16% Similarity=0.280 Sum_probs=148.1
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
+||+++++|++++|+++|++.++..+...+..++..++.+++.+++++.++|+++++++.+.++..++...+.++.++..
T Consensus 90 ~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~ 169 (275)
T PF00664_consen 90 SYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIFSKKIRKLS 169 (275)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhhcccccccc
Confidence 47888999999999999999999999999999999999999999999999999999888777777777777777777777
Q ss_pred HHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-
Q 011713 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI-V- 159 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 159 (479)
+...+..++..+.+.|.++|+++||+|+.|+++.+++.+..++..+...+......+.......+..+...++.++. .
T Consensus 170 ~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 249 (275)
T PF00664_consen 170 KKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVLILIFGAYL 249 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888999999999999999999999999999999998888777777666666666655555554333333332 2
Q ss_pred -HhCCcccHHHHHHHHHHHHHHHHH
Q 011713 160 -LLPGKHLPGFVGLSLSYALTLSSI 183 (479)
Q Consensus 160 -~~~~~~~~g~~~~~~~~~~~~~~~ 183 (479)
...|.+++|.+.+++.|...+..|
T Consensus 250 ~~~~g~~s~g~~~~~~~~~~~~~~p 274 (275)
T PF00664_consen 250 SVINGQISIGTLVAFLSLSSQLINP 274 (275)
T ss_dssp -HCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHhh
Confidence 244889999888888877766655
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.72 E-value=3.2e-17 Score=157.98 Aligned_cols=142 Identities=17% Similarity=0.227 Sum_probs=106.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCC-HHHHhccceEEcCCCccccccHHhhcCCCCCCCHHHH
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG-LKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEI 339 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~-~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i 339 (479)
..++|+||+|||||||++.|+|++.|++|+|.++|.++..++ ..++...++++||...--..++.+|-. ..+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~------k~~- 184 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCP------KAE- 184 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccch------HHH-
Confidence 689999999999999999999999999999999999998775 567888899999965332234444420 110
Q ss_pred HHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCc
Q 011713 340 WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGS 419 (479)
Q Consensus 340 ~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~ 419 (479)
+ -..++|+ .+|+++|+|||++. ..+...++....++
T Consensus 185 -------~-----------------------------~~~~i~~--~~P~villDE~~~~------e~~~~l~~~~~~G~ 220 (270)
T TIGR02858 185 -------G-----------------------------MMMLIRS--MSPDVIVVDEIGRE------EDVEALLEALHAGV 220 (270)
T ss_pred -------H-----------------------------HHHHHHh--CCCCEEEEeCCCcH------HHHHHHHHHHhCCC
Confidence 1 1455566 39999999999742 33444444444689
Q ss_pred EEEEEccCchh--h------------hcCCEEEEEeCCEEEEecChhhhh
Q 011713 420 TVITIAHRVPT--I------------TDSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 420 TvI~IaHrl~~--i------------~~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
|+|+++|..+. + ..+||+++|++|+ ..|+.+++.
T Consensus 221 ~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 221 SIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred EEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 99999997655 3 4489999999887 677776654
No 417
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.72 E-value=1.8e-17 Score=182.96 Aligned_cols=100 Identities=24% Similarity=0.302 Sum_probs=89.5
Q ss_pred ccccc-ccCCCCCCChhHHHHHHHHHHhhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc
Q 011713 358 LLDSS-VSDEGENWSVGQRQLFCLGRVLLKRN--RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD 433 (479)
Q Consensus 358 G~~T~-vge~G~~LSgGQrQRlaiARAll~~p--~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~ 433 (479)
|++.. ++.....|||||+||++|||||..+| ++|||||||++||+.....+.+.|+++. +++|+|+|+|+++.++.
T Consensus 475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~ 554 (924)
T TIGR00630 475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRA 554 (924)
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 44432 46667899999999999999999986 8999999999999999999999998874 47899999999999999
Q ss_pred CCEEEEE------eCCEEEEecChhhhhcc
Q 011713 434 SDMVMVL------SYGELVEYDLPSNLMKT 457 (479)
Q Consensus 434 ~D~I~vl------~~G~Ive~G~~~eLl~~ 457 (479)
||+|++| ++|+|++.|+++++...
T Consensus 555 aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 555 ADYVIDIGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred CCEEEEecccccCCCCEEeeccCHHHHhcC
Confidence 9999999 99999999999998653
No 418
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=6.8e-17 Score=158.29 Aligned_cols=209 Identities=20% Similarity=0.308 Sum_probs=133.4
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhc--cCCCCCceEEECCeecCCCCHHHH---
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR--LVEPENGRILIDGLDICSMGLKDL--- 306 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g--~~~p~~G~I~i~g~~i~~~~~~~l--- 306 (479)
+|.++|.+.+-.+ +..+.|-||.|-.|.++++|||+|-|||||++-|.. |--|..=.+++..+.+-.-+...+
T Consensus 264 DIKiEnF~ISA~G--k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tv 341 (807)
T KOG0066|consen 264 DIKIENFDISAQG--KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTV 341 (807)
T ss_pred cceeeeeeeeccc--ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHH
Confidence 4788887776543 347889999999999999999999999999998873 333443344444433211110000
Q ss_pred ----hccceEEcCCCccccccHHhhcCCCCCCCHHHHHHH---HHHccH-------HHHHHhCCccccccccCCC-CCCC
Q 011713 307 ----RTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEA---MEKCQL-------KATISRLPMLLDSSVSDEG-ENWS 371 (479)
Q Consensus 307 ----r~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a---~~~a~l-------~~~i~~lp~G~~T~vge~G-~~LS 371 (479)
.++..++..+.-|. .-|--+...-.|++.++ ++..|+ ...+..| |++-.+-++. ..+|
T Consensus 342 l~aD~kRl~lLeee~~L~-----~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGL--GFskEMQ~rPt~kFS 414 (807)
T KOG0066|consen 342 LKADKKRLALLEEEAKLM-----SQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGL--GFSKEMQERPTTKFS 414 (807)
T ss_pred HHhhHHHHHHHHHHHHHH-----HHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhc--CCChhHhcCCccccC
Confidence 00111111110000 00000000001222222 222222 1222222 5666666665 5799
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCEEE-Eec
Q 011713 372 VGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGELV-EYD 449 (479)
Q Consensus 372 gGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Iv-e~G 449 (479)
||.|-|++|||||+-.|-+|.|||||.+||-..---+-..|..+ .+|.++|+|.-+.+.+ |..|+.||+-++. ..|
T Consensus 415 GGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrG 492 (807)
T KOG0066|consen 415 GGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRG 492 (807)
T ss_pred CceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhhhhcc
Confidence 99999999999999999999999999999987766666666665 4899999999999987 9999999998875 355
Q ss_pred Ch
Q 011713 450 LP 451 (479)
Q Consensus 450 ~~ 451 (479)
+|
T Consensus 493 NY 494 (807)
T KOG0066|consen 493 NY 494 (807)
T ss_pred hH
Confidence 54
No 419
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.65 E-value=3.4e-16 Score=146.93 Aligned_cols=151 Identities=13% Similarity=0.185 Sum_probs=102.8
Q ss_pred CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccc-cHH
Q 011713 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVR 325 (479)
Q Consensus 247 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~g-Ti~ 325 (479)
+.+.+|++++.++ +.++|+|||||||||+++.+.+..-.. + .|.. .+ ..+..++++.| +|.. ++.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~--~---~g~~---vp--~~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLA--Q---IGSF---VP--ASKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHh--c---cCCe---ec--cccceecceee---EeccCCch
Confidence 4589999999987 999999999999999999997643211 0 1111 11 11235565544 2321 334
Q ss_pred hhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH----HHHHHHHh--hcCCCEEEEeCC---
Q 011713 326 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ----LFCLGRVL--LKRNRILILDEA--- 396 (479)
Q Consensus 326 eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ----RlaiARAl--l~~p~iliLDE~--- 396 (479)
||+ |.||.+ +..+++++ ..+|+++|||||
T Consensus 84 ~~l------------------------------------------s~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~g 121 (216)
T cd03284 84 DDL------------------------------------------AGGRSTFMVEMVETANILNNATERSLVLLDEIGRG 121 (216)
T ss_pred hhh------------------------------------------ccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 444 333332 23355554 369999999999
Q ss_pred CCCCCHHH-HHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhh
Q 011713 397 TASIDSAT-DAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 397 TSaLD~~t-e~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eL 454 (479)
|+++|... ...+.+.+.+. .++|+|++||.....+.+|++..+++|++...++.+++
T Consensus 122 t~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 122 TSTYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred CChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 99999865 34555665442 47899999999887788898888899998877766655
No 420
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.63 E-value=1.6e-15 Score=140.92 Aligned_cols=140 Identities=16% Similarity=0.110 Sum_probs=95.4
Q ss_pred CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE-EcCCCccccccH
Q 011713 246 TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI-IPQEPTLFRGSV 324 (479)
Q Consensus 246 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~-V~Q~~~lF~gTi 324 (479)
.+++.+|+++++++|+.++|.|||||||||+++.+.++. +..++|. ||-.. ..-++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~ 71 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPI 71 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccC
Confidence 346999999999999999999999999999999998873 3333332 22211 11245
Q ss_pred HhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHH
Q 011713 325 RTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSAT 404 (479)
Q Consensus 325 ~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~t 404 (479)
.|||... + +.+..+.++...+|+|++|+ ..+-++..+|+++|||||++++|+..
T Consensus 72 ~d~I~~~-----------------------~--~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~ 125 (204)
T cd03282 72 FNRLLSR-----------------------L--SNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSAD 125 (204)
T ss_pred hhheeEe-----------------------c--CCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHH
Confidence 5555210 0 11111233446789999976 45555778999999999999999976
Q ss_pred HHHH-HHHHHHHC-CCcEEEEEccCchhhhcC
Q 011713 405 DAIL-QRIIREEF-PGSTVITIAHRVPTITDS 434 (479)
Q Consensus 405 e~~i-~~~l~~~~-~~~TvI~IaHrl~~i~~~ 434 (479)
-..+ .+.++.+. .++++|++||..+.++.+
T Consensus 126 ~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 126 GFAISLAILECLIKKESTVFFATHFRDIAAIL 157 (204)
T ss_pred HHHHHHHHHHHHHhcCCEEEEECChHHHHHHh
Confidence 3333 23333322 389999999999887654
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.62 E-value=1.7e-15 Score=143.06 Aligned_cols=169 Identities=21% Similarity=0.287 Sum_probs=101.4
Q ss_pred eeeeEEeeCCcEEEEEcCCCCcHHHHHHHH-hccCC--CCCceEEECCeecCCC------CHHHHhccceEEcCCCccc-
Q 011713 251 KGITCTFKEGTRVGVVGRTGSGKTTLISAL-FRLVE--PENGRILIDGLDICSM------GLKDLRTKLSIIPQEPTLF- 320 (479)
Q Consensus 251 ~~isl~i~~Ge~vaivG~sGsGKSTL~~lL-~g~~~--p~~G~I~i~g~~i~~~------~~~~lr~~i~~V~Q~~~lF- 320 (479)
+...+.+.| ..++|+|||||||||++..| .-|.. ..+.+ +...+++ ........|....+++--.
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r----~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~ 90 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFR----GSKLKDLINKSGSDQDSKSAEVELIFDNSDEEF 90 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-----SSGGTCB--BTTB---SEEEEEEEEECTTEES
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHccccccc----ccccccccccccccccccccccccccccccccc
Confidence 345555554 59999999999999999999 34432 11111 1111111 1112223344443332211
Q ss_pred ---cc--cHHhhcC--------CC-CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHH---
Q 011713 321 ---RG--SVRTNLD--------PL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV--- 383 (479)
Q Consensus 321 ---~g--Ti~eNi~--------~~-~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA--- 383 (479)
.. .|...+. .. ...+..++.+.+....+... .||||||-+++||=-
T Consensus 91 ~~~~~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~-----------------~lSgGEk~~~~Lal~lA~ 153 (220)
T PF02463_consen 91 ELDKKEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE-----------------FLSGGEKSLVALALLLAL 153 (220)
T ss_dssp SSSSSEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT-----------------GS-HHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-----------------cccccccccccccccccc
Confidence 11 1111111 01 12344555554444433221 899999999999833
Q ss_pred -hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEe
Q 011713 384 -LLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLS 441 (479)
Q Consensus 384 -ll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~ 441 (479)
-++++|++||||+.++||+.....+.+.|++..+++-+|++||+......||+.+.+.
T Consensus 154 ~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 154 QRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp HTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3567899999999999999999999999999988899999999999999999988763
No 422
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.61 E-value=2.7e-15 Score=147.03 Aligned_cols=200 Identities=24% Similarity=0.340 Sum_probs=141.1
Q ss_pred EEeCCCCCceeeeeeEEeeCCc-----EEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEc
Q 011713 240 VRYRPNTPLVLKGITCTFKEGT-----RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP 314 (479)
Q Consensus 240 f~Y~~~~~~vL~~isl~i~~Ge-----~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~ 314 (479)
+.|++.. ..+.++.|.|+.|+ .+...|++|-||||++++++|..+|++|. ++..+ +++|=|
T Consensus 343 y~Yp~m~-k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSykp 408 (592)
T KOG0063|consen 343 YSYPKMK-KTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYKP 408 (592)
T ss_pred eccCcce-eeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceeccc
Confidence 5576543 47899999999985 68899999999999999999999998762 22222 477888
Q ss_pred CCCc-cccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEE
Q 011713 315 QEPT-LFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILIL 393 (479)
Q Consensus 315 Q~~~-lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliL 393 (479)
|... =|.||+|.=+. +.+|.+...-+....+.+ |-..+..++..-.+||||+.||+|||-+|=+.+++++.
T Consensus 409 qkispK~~~tvR~ll~-------~kIr~ay~~pqF~~dvmk-pL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYli 480 (592)
T KOG0063|consen 409 QKISPKREGTVRQLLH-------TKIRDAYMHPQFVNDVMK-PLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLI 480 (592)
T ss_pred cccCccccchHHHHHH-------HHhHhhhcCHHHHHhhhh-hhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEe
Confidence 8654 58899988653 222222222222122221 22233344455578999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHH--CCCcEEEEEccCchhhhc-CCEEEEEeCC--EEEEecChhhhhccCchH
Q 011713 394 DEATASIDSATDAILQRIIREE--FPGSTVITIAHRVPTITD-SDMVMVLSYG--ELVEYDLPSNLMKTNSAF 461 (479)
Q Consensus 394 DE~TSaLD~~te~~i~~~l~~~--~~~~TvI~IaHrl~~i~~-~D~I~vl~~G--~Ive~G~~~eLl~~~g~y 461 (479)
|||.+-||++.....-+.+++. ...+|-.+|-|.+-.... |||++|.+.- ...-.-+++.|++....|
T Consensus 481 DEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~gmN~f 553 (592)
T KOG0063|consen 481 DEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLAGMNRF 553 (592)
T ss_pred cCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHHHhHHH
Confidence 9999999998866655556553 357999999999876654 9999999763 223334556665533333
No 423
>PRK00064 recF recombination protein F; Reviewed
Probab=99.60 E-value=2e-14 Score=145.40 Aligned_cols=76 Identities=22% Similarity=0.375 Sum_probs=65.8
Q ss_pred CCCChhHHHHHHHHHHhh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc---CC
Q 011713 368 ENWSVGQRQLFCLGRVLL---------KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD---SD 435 (479)
Q Consensus 368 ~~LSgGQrQRlaiARAll---------~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~---~D 435 (479)
..+|+||+|+++||+++. ++||||+||||+|.||+.....+.+.+.+. ++++++.||.+..+.. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 468999999999999884 799999999999999999999998888653 4688999998776543 46
Q ss_pred EEEEEeCCEE
Q 011713 436 MVMVLSYGEL 445 (479)
Q Consensus 436 ~I~vl~~G~I 445 (479)
+++.|++|+|
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 424
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.59 E-value=1.2e-15 Score=164.16 Aligned_cols=106 Identities=18% Similarity=0.261 Sum_probs=90.9
Q ss_pred HHHHHHHHccHHHHHHhCCccccccccCCC------CCCChhHHHHHHHHHHhh----------cCCCEEEEeCCC-CCC
Q 011713 338 EIWEAMEKCQLKATISRLPMLLDSSVSDEG------ENWSVGQRQLFCLGRVLL----------KRNRILILDEAT-ASI 400 (479)
Q Consensus 338 ~i~~a~~~a~l~~~i~~lp~G~~T~vge~G------~~LSgGQrQRlaiARAll----------~~p~iliLDE~T-SaL 400 (479)
.+.+.|+..+. ++...+|+++++.+++.| ..||||||||++||||++ .+|++||||||| ++|
T Consensus 432 ~~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~l 510 (562)
T PHA02562 432 QINHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGAL 510 (562)
T ss_pred HHHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCccc
Confidence 34455555543 455567999999999888 689999999999999887 589999999998 789
Q ss_pred CHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeC-CEE
Q 011713 401 DSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSY-GEL 445 (479)
Q Consensus 401 D~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~-G~I 445 (479)
|+.+...+.+.|.+. +++|+|+|||+......||++++|++ |+.
T Consensus 511 d~~~~~~~~~~l~~~-~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 511 DAEGTKALLSILDSL-KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred chhHHHHHHHHHHhC-CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 999999999999988 78999999999998899999999986 554
No 425
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.53 E-value=1.9e-13 Score=140.07 Aligned_cols=177 Identities=19% Similarity=0.218 Sum_probs=127.2
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECC---eecCC-----CCHHHHhccceEEcCCCcc
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG---LDICS-----MGLKDLRTKLSIIPQEPTL 319 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g---~~i~~-----~~~~~lr~~i~~V~Q~~~l 319 (479)
.+++++ +++.+|++++|+|+||+|||||+++|+|+++|+.|.|.+.| .++.+ ++...+++.+.+|.+-
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~--- 222 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS--- 222 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC---
Confidence 489999 99999999999999999999999999999999999999954 44443 3455677778877531
Q ss_pred ccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCcccccccc-CCCCCCChhHHHH-HHHHHHhhcCCCEEEEeCCC
Q 011713 320 FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVS-DEGENWSVGQRQL-FCLGRVLLKRNRILILDEAT 397 (479)
Q Consensus 320 F~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vg-e~G~~LSgGQrQR-laiARAll~~p~iliLDE~T 397 (479)
++..-+++..+.-.+.+.|+... +|.|-.+- +.=+++- |.|| |++ .+.+|| .|
T Consensus 223 ------------~~~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~Dsltr~A--~A~rEisl---~~ge~P------~~ 277 (438)
T PRK07721 223 ------------DQPALMRIKGAYTATAIAEYFRD--QGLNVMLMMDSVTRVA--MAQREIGL---AVGEPP------TT 277 (438)
T ss_pred ------------CCCHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEeChHHHH--HHHHHHHH---hcCCCC------cc
Confidence 12223455555445555566654 47776543 2212111 1111 111 123454 58
Q ss_pred CCCCHHHHHHHHHHHHHHC---CCc-----EEEEEccCchhhhcCCEEEEEeCCEEEEecChhhh
Q 011713 398 ASIDSATDAILQRIIREEF---PGS-----TVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 398 SaLD~~te~~i~~~l~~~~---~~~-----TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eL 454 (479)
+++|+..-..+.+.+++.. +|. |+++.+|+++. ..||++.++.+|+|+..++..+-
T Consensus 278 ~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~~ 341 (438)
T PRK07721 278 KGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLANK 341 (438)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHHC
Confidence 9999999998888888765 465 99999999985 77999999999999998875443
No 426
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.49 E-value=3.7e-14 Score=133.45 Aligned_cols=143 Identities=17% Similarity=0.203 Sum_probs=87.1
Q ss_pred EEEEEcCCCCcHHHHH-HHHhccCCC-----------------CCceEEECCeecCCC-CHHHHhccceEEcCCC-c--c
Q 011713 262 RVGVVGRTGSGKTTLI-SALFRLVEP-----------------ENGRILIDGLDICSM-GLKDLRTKLSIIPQEP-T--L 319 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~-~lL~g~~~p-----------------~~G~I~i~g~~i~~~-~~~~lr~~i~~V~Q~~-~--l 319 (479)
+++++|++|||||||+ +++.|.+++ +.|.+.+++.|...- ....+|. +++.+.. + .
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~--~~~~~~~~~i~v 88 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRD--GYYIKGQCAIIM 88 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhH--HHhccCCEEEEE
Confidence 6999999999999999 688888765 568888888887532 1122221 2222221 1 2
Q ss_pred cccc-----------------HHhhcC---CCCCCC--HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCCh--hHH
Q 011713 320 FRGS-----------------VRTNLD---PLGMYS--DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSV--GQR 375 (479)
Q Consensus 320 F~gT-----------------i~eNi~---~~~~~~--~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSg--GQr 375 (479)
|+.| ..+|+. .+...+ +.++. .+. ..+.....-.+- .+ ...|| -|+
T Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~--~~~---~~~~~~~~~~~~-e~----Sa~~~~~v~~ 158 (215)
T PTZ00132 89 FDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVK--ARQ---ITFHRKKNLQYY-DI----SAKSNYNFEK 158 (215)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCC--HHH---HHHHHHcCCEEE-EE----eCCCCCCHHH
Confidence 3333 223432 111111 11110 000 012222111111 11 12233 399
Q ss_pred HHHHHHHHhhcCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHC
Q 011713 376 QLFCLGRVLLKRNRILILDEAT-----ASIDSATDAILQRIIREEF 416 (479)
Q Consensus 376 QRlaiARAll~~p~iliLDE~T-----SaLD~~te~~i~~~l~~~~ 416 (479)
+++.|||+++.+|++++||||| ++||+.+.+.+.+.++++.
T Consensus 159 ~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 159 PFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999 9999999999999998763
No 427
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.47 E-value=3.7e-13 Score=126.10 Aligned_cols=135 Identities=16% Similarity=0.153 Sum_probs=91.1
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhc--cCCCCCceEEECCeecCCCCHHHHhccceEEcCCCcccc--cc
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR--LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR--GS 323 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g--~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~--gT 323 (479)
+|-+|+++.=..+.+++|+||+|+||||+++.+.. .. +..|...... .-.+++..|...-+. +|
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccC
Confidence 46666666422237999999999999999999983 23 5566554322 124667766543221 12
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHH
Q 011713 324 VRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSA 403 (479)
Q Consensus 324 i~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~ 403 (479)
+.+++ ..| .-+-||+++|+++..+|+++|||||++++|+.
T Consensus 85 i~~~~--------------------S~f--------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~ 124 (213)
T cd03281 85 VSSGQ--------------------SAF--------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTE 124 (213)
T ss_pred hhhcc--------------------chH--------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHH
Confidence 22222 111 23459999999999999999999999999997
Q ss_pred H-HHHHHHHHHHHCC----CcEEEEEccCchhhhcC
Q 011713 404 T-DAILQRIIREEFP----GSTVITIAHRVPTITDS 434 (479)
Q Consensus 404 t-e~~i~~~l~~~~~----~~TvI~IaHrl~~i~~~ 434 (479)
. .......++.+.+ +.++|++||.++.++..
T Consensus 125 ~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 125 DGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 5 4444445555432 24899999999987764
No 428
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.43 E-value=3.2e-13 Score=144.54 Aligned_cols=77 Identities=14% Similarity=0.145 Sum_probs=72.3
Q ss_pred CCCChhHHHHHHHHHHhhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCC
Q 011713 368 ENWSVGQRQLFCLGRVLLKR----NRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYG 443 (479)
Q Consensus 368 ~~LSgGQrQRlaiARAll~~----p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G 443 (479)
..|||||+||++|||+++.. |++|||||||++||+.+...+.+.|+++.+++|+|+|||++..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 46899999999999999975 69999999999999999999999999988899999999999999999999999987
Q ss_pred E
Q 011713 444 E 444 (479)
Q Consensus 444 ~ 444 (479)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 6
No 429
>PRK10869 recombination and repair protein; Provisional
Probab=99.42 E-value=4.2e-13 Score=142.51 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=71.6
Q ss_pred CCChhHHHHHHHHHHhhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCE
Q 011713 369 NWSVGQRQLFCLGRVLLK----RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGE 444 (479)
Q Consensus 369 ~LSgGQrQRlaiARAll~----~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~ 444 (479)
.+||||+||++|||+++. +|+++|||||+++||..+...+.+.|+++.+++|+|+|||.+..+..||++++++++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 479999999999999996 5899999999999999999999999999888899999999999999999999998865
No 430
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.41 E-value=3.2e-13 Score=123.98 Aligned_cols=76 Identities=12% Similarity=0.132 Sum_probs=54.3
Q ss_pred CCCCChhHHHHHHHHHHhhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHC--CCcEEEEEccCchhhhcCCEEEEEe
Q 011713 367 GENWSVGQRQLFCLGRVLLK--RNRILILDEATASIDSATDAILQ-RIIREEF--PGSTVITIAHRVPTITDSDMVMVLS 441 (479)
Q Consensus 367 G~~LSgGQrQRlaiARAll~--~p~iliLDE~TSaLD~~te~~i~-~~l~~~~--~~~TvI~IaHrl~~i~~~D~I~vl~ 441 (479)
-..+|+|++| +++++.. +|+++|+|||++++|+.....+. ..++.+. .++++|++||..+..+.+|+---++
T Consensus 59 ~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~ 135 (185)
T smart00534 59 LSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVR 135 (185)
T ss_pred ccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccce
Confidence 3567887776 5555555 99999999999999999766554 4444443 3789999999998777777533334
Q ss_pred CCEE
Q 011713 442 YGEL 445 (479)
Q Consensus 442 ~G~I 445 (479)
+++.
T Consensus 136 ~~~~ 139 (185)
T smart00534 136 NLHM 139 (185)
T ss_pred EEEE
Confidence 4443
No 431
>PRK13695 putative NTPase; Provisional
Probab=99.36 E-value=8.9e-13 Score=119.80 Aligned_cols=79 Identities=15% Similarity=0.057 Sum_probs=64.1
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCE
Q 011713 367 GENWSVGQRQLFCLGRVLLKRNRILILDEA--TASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGE 444 (479)
Q Consensus 367 G~~LSgGQrQRlaiARAll~~p~iliLDE~--TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~ 444 (479)
...+||+++-+..+++..+++|+++++||| +..+|+...+.+.+++ ..++++|+++|+-..-..+|+|..+.+|+
T Consensus 76 ~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~~~~ 152 (174)
T PRK13695 76 VVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRPGGR 152 (174)
T ss_pred EEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccCCcE
Confidence 346999999999999999999999999994 4455555455555554 24799999999966667799999999999
Q ss_pred EEEe
Q 011713 445 LVEY 448 (479)
Q Consensus 445 Ive~ 448 (479)
|.+.
T Consensus 153 i~~~ 156 (174)
T PRK13695 153 VYEL 156 (174)
T ss_pred EEEE
Confidence 9875
No 432
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.35 E-value=1.4e-12 Score=142.86 Aligned_cols=144 Identities=19% Similarity=0.228 Sum_probs=97.2
Q ss_pred cEEEEeEEEEeCCCCCceeee-----eeEEeeCC-cEEEEEcCCCCcHHHHHHHHhcc-CCCCCceEEECCeecCCCCHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKG-----ITCTFKEG-TRVGVVGRTGSGKTTLISALFRL-VEPENGRILIDGLDICSMGLK 304 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~-----isl~i~~G-e~vaivG~sGsGKSTL~~lL~g~-~~p~~G~I~i~g~~i~~~~~~ 304 (479)
.+.++++.. |++++ +|+++.+| ++++|+||||+||||+++.+.+. +-+..|
T Consensus 295 ~i~l~~~rh-------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G--------------- 352 (771)
T TIGR01069 295 KIILENARH-------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG--------------- 352 (771)
T ss_pred CEEEccccC-------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC---------------
Confidence 577777654 23433 78888887 99999999999999999999987 333333
Q ss_pred HHhccceEEcCCCc-cccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 011713 305 DLRTKLSIIPQEPT-LFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (479)
Q Consensus 305 ~lr~~i~~V~Q~~~-lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA 383 (479)
.+||.... .+ .+.+++. ....+++ . +.++-..||+|++|+..|+++
T Consensus 353 ------~~Vpa~~~~~~--~~~d~i~--~~i~~~~------------s-----------i~~~LStfS~~m~~~~~il~~ 399 (771)
T TIGR01069 353 ------IPIPANEHSEI--PYFEEIF--ADIGDEQ------------S-----------IEQNLSTFSGHMKNISAILSK 399 (771)
T ss_pred ------CCccCCccccc--cchhhee--eecChHh------------H-----------HhhhhhHHHHHHHHHHHHHHh
Confidence 14444331 11 1222221 0111110 0 112235689999999999998
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHC-CCcEEEEEccCchhh
Q 011713 384 LLKRNRILILDEATASIDSATDAILQ-RIIREEF-PGSTVITIAHRVPTI 431 (479)
Q Consensus 384 ll~~p~iliLDE~TSaLD~~te~~i~-~~l~~~~-~~~TvI~IaHrl~~i 431 (479)
+ .+|+++|||||++++|+..-..+. ..++.+. .++++|++||..+..
T Consensus 400 ~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 400 T-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 7 789999999999999999876664 4444432 578999999997653
No 433
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.34 E-value=4.9e-12 Score=118.83 Aligned_cols=137 Identities=16% Similarity=0.080 Sum_probs=83.5
Q ss_pred CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhc-cCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHH
Q 011713 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR-LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVR 325 (479)
Q Consensus 247 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g-~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~ 325 (479)
+++.+|+++.+++|++++|.||||+||||+++.+.+ .+.++.|.....- . -.+++.+|=..-+ ...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~----------~~~~~~~~i~~~~--~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S----------ATLSIFDSVLTRM--GAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c----------eEEeccceEEEEe--cCc
Confidence 468999999999999999999999999999999999 7778888754332 1 1233332211111 112
Q ss_pred hhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHH
Q 011713 326 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATD 405 (479)
Q Consensus 326 eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te 405 (479)
|++.-+...=..|+.+ ++-.=.-..+|+++|||||.++.|+...
T Consensus 85 d~~~~~~StF~~e~~~------------------------------------~~~il~~~~~~sLvllDE~~~gT~~~d~ 128 (222)
T cd03287 85 DSIQHGMSTFMVELSE------------------------------------TSHILSNCTSRSLVILDELGRGTSTHDG 128 (222)
T ss_pred cccccccchHHHHHHH------------------------------------HHHHHHhCCCCeEEEEccCCCCCChhhH
Confidence 2221100000112221 1111112247999999999666654433
Q ss_pred ----HHHHHHHHHHCCCcEEEEEccCchhhhc
Q 011713 406 ----AILQRIIREEFPGSTVITIAHRVPTITD 433 (479)
Q Consensus 406 ----~~i~~~l~~~~~~~TvI~IaHrl~~i~~ 433 (479)
..+.+.+.+. .++|+|++||..+....
T Consensus 129 ~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 129 IAIAYATLHYLLEE-KKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHHHHHHHhc-cCCeEEEEcccHHHHHH
Confidence 3444554443 47899999999887543
No 434
>PRK14079 recF recombination protein F; Provisional
Probab=99.32 E-value=2.4e-11 Score=122.31 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=62.5
Q ss_pred CCCChhHHHHHHHHHHhh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEE
Q 011713 368 ENWSVGQRQLFCLGRVLL---------KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVM 438 (479)
Q Consensus 368 ~~LSgGQrQRlaiARAll---------~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~ 438 (479)
.-+|+||++++++|+.|. .+||+++||||+|.||+.....+.+.+.... .+.|..|+ .-..+|+++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t~---~~~~~~~~~ 336 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGTE---APPGAALTL 336 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcCC---CCCCCceEE
Confidence 357999999999999998 8999999999999999999888888886532 34444443 445689999
Q ss_pred EEeCCEEEEec
Q 011713 439 VLSYGELVEYD 449 (479)
Q Consensus 439 vl~~G~Ive~G 449 (479)
++++|++.-..
T Consensus 337 ~~~~~~~~~~~ 347 (349)
T PRK14079 337 RIEAGVFTPEA 347 (349)
T ss_pred EEeccEecCCC
Confidence 99999986543
No 435
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.31 E-value=2.8e-12 Score=127.10 Aligned_cols=143 Identities=19% Similarity=0.185 Sum_probs=99.9
Q ss_pred eeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCC
Q 011713 253 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG 332 (479)
Q Consensus 253 isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~ 332 (479)
+++.+++|+.++|+|++|||||||++.|+++++|..|.+.++ |..++.+.. +..+.++.+. +-....
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~----------~~~~~~ 203 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSK----------GGQGLA 203 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecC----------CCCCcC
Confidence 457788999999999999999999999999999999988885 334433321 1222222110 000000
Q ss_pred CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 011713 333 MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRII 412 (479)
Q Consensus 333 ~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l 412 (479)
..+ ..=.++++|-.+|+++++|||.+ .+ ..+.+
T Consensus 204 ~~~----------------------------------------~~~~l~~~Lr~~pd~ii~gE~r~---~e----~~~~l 236 (308)
T TIGR02788 204 KVT----------------------------------------PKDLLQSCLRMRPDRIILGELRG---DE----AFDFI 236 (308)
T ss_pred ccC----------------------------------------HHHHHHHHhcCCCCeEEEeccCC---HH----HHHHH
Confidence 111 11245567778999999999997 22 33445
Q ss_pred HHHCCC-cEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhh
Q 011713 413 REEFPG-STVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 413 ~~~~~~-~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl 455 (479)
+....+ .+++...|-.+.....||+..|..|++...|...+.+
T Consensus 237 ~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 237 RAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 444344 4669999999988889999999999999989888876
No 436
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.31 E-value=3.6e-11 Score=114.09 Aligned_cols=155 Identities=12% Similarity=0.157 Sum_probs=90.1
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHH-HHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTL-ISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL-~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
+.++++...+++ -+++|+.+.|+|++||||||+ .+++.++.++.+..+++.. +.+++++.+++
T Consensus 8 ~~~~~ld~~l~g-----------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~----e~~~~~~~~~~- 71 (230)
T PRK08533 8 LSRDELHKRLGG-----------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST----QLTTTEFIKQM- 71 (230)
T ss_pred EEEeeeehhhCC-----------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC----CCCHHHHHHHH-
Confidence 555666554432 279999999999999999999 6899998776555555442 11222222221
Q ss_pred EEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccH--HHHHHhCCcccc-ccccCCCCCCChhHHHHHHHHHHhh---
Q 011713 312 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQL--KATISRLPMLLD-SSVSDEGENWSVGQRQLFCLGRVLL--- 385 (479)
Q Consensus 312 ~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l--~~~i~~lp~G~~-T~vge~G~~LSgGQrQRlaiARAll--- 385 (479)
+..+. ++++.. +.+. -.+. ..+|+++.++-.+++.+-
T Consensus 72 --------------------------------~~~g~~~~~~~~~--~~l~~~~~~---~~~~~~~~~~~~l~~il~~~~ 114 (230)
T PRK08533 72 --------------------------------MSLGYDINKKLIS--GKLLYIPVY---PLLSGNSEKRKFLKKLMNTRR 114 (230)
T ss_pred --------------------------------HHhCCchHHHhhc--CcEEEEEec---ccccChHHHHHHHHHHHHHHH
Confidence 11111 011100 0000 0000 135666555544444433
Q ss_pred -cCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHCC-CcEEEEEccCchhh--------hc-CCEEEEEe
Q 011713 386 -KRNRILILDEATASI----DSATDAILQRIIREEFP-GSTVITIAHRVPTI--------TD-SDMVMVLS 441 (479)
Q Consensus 386 -~~p~iliLDE~TSaL----D~~te~~i~~~l~~~~~-~~TvI~IaHrl~~i--------~~-~D~I~vl~ 441 (479)
.+|+++++||||+.+ |+...+.+.+.++.+.+ ++|+++ ||..... +. ||-|+.|+
T Consensus 115 ~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 115 FYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred hcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 369999999999999 66666778888776644 666555 5554432 22 57777776
No 437
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.28 E-value=5.7e-12 Score=124.00 Aligned_cols=162 Identities=25% Similarity=0.372 Sum_probs=112.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce--------------------------
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS-------------------------- 311 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~-------------------------- 311 (479)
+||+..++||.+|-||||-++.|+|-.+|.-|.-- ++ .+|..-++
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~p--------p~w~~il~~frgselq~yftk~le~~lk~~~kpQ 168 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NP--------PDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQ 168 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CC--------cchHHHhhhhhhHHHhhhhhhhccccccCcCChH
Confidence 58999999999999999999999999999877531 12 12222222
Q ss_pred EEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEE
Q 011713 312 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 391 (479)
Q Consensus 312 ~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~il 391 (479)
||.|=|-.-.|++.+++.-- .+.+...+++...+|.. .+...-..||||+-||.|||-+...+++++
T Consensus 169 yvd~ipr~~k~~v~~~l~~~--~~r~~~~~~~~~~~L~~-----------~~~re~~~lsggelqrfaia~~~vq~advy 235 (592)
T KOG0063|consen 169 YVDQIPRAVKGTVGSLLDRK--DERDNKEEVCDQLDLNN-----------LLDREVEQLSGGELQRFAIAMVCVQKADVY 235 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhcccHHHHHHHHHHhh-----------HHHhhhhhcccchhhhhhhhhhhhhhccee
Confidence 22222222333444433210 01111222333332222 222233579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEe
Q 011713 392 ILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLS 441 (479)
Q Consensus 392 iLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~ 441 (479)
++|||.|-||.....+--.+|+.+. .++=+|+|-|.|+.+.. .|-|.++-
T Consensus 236 MFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 236 MFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred EecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 9999999999998887778888765 58999999999999876 78887774
No 438
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.24 E-value=4.7e-12 Score=128.45 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=56.7
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCc-eEEECCeecCCCCHHHHhccceEEcCCC
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RILIDGLDICSMGLKDLRTKLSIIPQEP 317 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G-~I~i~g~~i~~~~~~~lr~~i~~V~Q~~ 317 (479)
.+|++||+++++||.++|+||||||||||++ .++.+|++| +|.+||.++...+..+++..- +|+|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence 4899999999999999999999999999999 778888888 799999999887655443322 777754
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.23 E-value=8e-11 Score=107.98 Aligned_cols=81 Identities=12% Similarity=0.118 Sum_probs=59.1
Q ss_pred ccccCCCCCCChhHHH-----HHHHHHH-hhcCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHC-CCcEEEEEccCchh
Q 011713 361 SSVSDEGENWSVGQRQ-----LFCLGRV-LLKRNRILILDEATASID---SATDAILQRIIREEF-PGSTVITIAHRVPT 430 (479)
Q Consensus 361 T~vge~G~~LSgGQrQ-----RlaiARA-ll~~p~iliLDE~TSaLD---~~te~~i~~~l~~~~-~~~TvI~IaHrl~~ 430 (479)
..+......+|+||+| +..+.++ .-.+|+++++||||+.+| ......+.+.++.+. .+.|+|+++|....
T Consensus 63 ~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 63 AIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGL 142 (187)
T ss_pred EEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccC
Confidence 3344445678999998 3444444 456899999999999999 666666666665543 47899999998764
Q ss_pred ---------hh-cCCEEEEEe
Q 011713 431 ---------IT-DSDMVMVLS 441 (479)
Q Consensus 431 ---------i~-~~D~I~vl~ 441 (479)
+. .||.|+.|+
T Consensus 143 ~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 143 EGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred CCcccCcCceeEeeeEEEEEE
Confidence 33 489999997
No 440
>PRK01156 chromosome segregation protein; Provisional
Probab=99.22 E-value=2.4e-11 Score=137.64 Aligned_cols=76 Identities=24% Similarity=0.346 Sum_probs=66.6
Q ss_pred CCCCCChhHHHHHHH------HHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC---C-cEEEEEccCchhhhcCC
Q 011713 366 EGENWSVGQRQLFCL------GRVLLKRNRILILDEATASIDSATDAILQRIIREEFP---G-STVITIAHRVPTITDSD 435 (479)
Q Consensus 366 ~G~~LSgGQrQRlai------ARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~---~-~TvI~IaHrl~~i~~~D 435 (479)
....|||||+||+|| ||+++.+|++++|||||++||+.+...+.+.+..... + .|+|+|||+...+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 357899999999975 5999999999999999999999998888888764321 2 58999999999999999
Q ss_pred EEEEEe
Q 011713 436 MVMVLS 441 (479)
Q Consensus 436 ~I~vl~ 441 (479)
+|+.++
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999997
No 441
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.22 E-value=4.4e-11 Score=126.34 Aligned_cols=95 Identities=23% Similarity=0.319 Sum_probs=83.3
Q ss_pred cCCCCCCChhHHHHHHHHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcCCEEEEE
Q 011713 364 SDEGENWSVGQRQLFCLGRVLLKR--NRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVL 440 (479)
Q Consensus 364 ge~G~~LSgGQrQRlaiARAll~~--p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl 440 (479)
......|||||.|||-||+-+-.+ -=++|||||+.+|=+.--.++.++|+++. .|.|+|+|-|+..+++.||+|+=|
T Consensus 476 ~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iIDi 555 (935)
T COG0178 476 SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDI 555 (935)
T ss_pred cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEee
Confidence 344578999999999999999877 35889999999998877667777877765 489999999999999999999987
Q ss_pred ------eCCEEEEecChhhhhccC
Q 011713 441 ------SYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 441 ------~~G~Ive~G~~~eLl~~~ 458 (479)
..|+|+.+|+++|+|+++
T Consensus 556 GPgAG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 556 GPGAGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred CCCCCcCCCEEEEccCHHHHHhCC
Confidence 789999999999999865
No 442
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.20 E-value=8.5e-11 Score=119.73 Aligned_cols=168 Identities=15% Similarity=0.162 Sum_probs=117.4
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.++-++++-.|... ..+++++ +++.+|++++|+|++|+|||||++.|+|..+|+.|.|.+.|..-+
T Consensus 130 ~~~r~~i~~~l~TG-iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~------------ 195 (432)
T PRK06793 130 AFEREEITDVFETG-IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR------------ 195 (432)
T ss_pred chheechhhccCCC-CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc------------
Confidence 46667777667533 3488885 999999999999999999999999999999999998877664332
Q ss_pred EEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhh------
Q 011713 312 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL------ 385 (479)
Q Consensus 312 ~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll------ 385 (479)
+++|.+. +.+...++. .|.+=-.-.+-|.|+|+|.+.+.+..
T Consensus 196 -----------ev~e~~~-----------~~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~ 243 (432)
T PRK06793 196 -----------EVKDFIR-----------KELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEYFRD 243 (432)
T ss_pred -----------cHHHHHH-----------HHhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2222221 111111110 11111233567999999999999888
Q ss_pred -cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcCCEEEEEeCCEEEEecC
Q 011713 386 -KRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVLSYGELVEYDL 450 (479)
Q Consensus 386 -~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~ 450 (479)
.++-++++||+|...|+. +.|-..+.+.. .+.|..+-+|-.+.++.|-+ .++|.|...++
T Consensus 244 ~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 244 QGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred cCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEE
Confidence 788999999999999997 44444555443 46788888885555566554 47888875543
No 443
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.19 E-value=4.4e-11 Score=131.66 Aligned_cols=78 Identities=15% Similarity=0.107 Sum_probs=59.7
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHH-CCCcEEEEEccCchhhhcC-CEEEEEeCC
Q 011713 367 GENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRI-IREE-FPGSTVITIAHRVPTITDS-DMVMVLSYG 443 (479)
Q Consensus 367 G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~-l~~~-~~~~TvI~IaHrl~~i~~~-D~I~vl~~G 443 (479)
-..+|+|++|+..|+|++ .+|+++|||||++++|+.....+..+ +..+ ..++++|++||.......+ |+..+ .++
T Consensus 388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v-~~~ 465 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGV-ENA 465 (782)
T ss_pred hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCe-EEE
Confidence 367899999999999999 88999999999999999886666544 4333 2478999999998876653 44333 345
Q ss_pred EEE
Q 011713 444 ELV 446 (479)
Q Consensus 444 ~Iv 446 (479)
.+.
T Consensus 466 ~~~ 468 (782)
T PRK00409 466 SVE 468 (782)
T ss_pred EEE
Confidence 553
No 444
>PRK03918 chromosome segregation protein; Provisional
Probab=99.18 E-value=4.6e-11 Score=135.35 Aligned_cols=75 Identities=27% Similarity=0.275 Sum_probs=66.7
Q ss_pred CCCChhHHH------HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEccCchhhhcCCEEEEE
Q 011713 368 ENWSVGQRQ------LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITDSDMVMVL 440 (479)
Q Consensus 368 ~~LSgGQrQ------RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaHrl~~i~~~D~I~vl 440 (479)
..|||||+| |+||||++..+|+++||||||++||+.....+.+.|..... +.|+|+|||+......||++++|
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l 866 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRV 866 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEE
Confidence 468999999 56667789999999999999999999999999999887643 57999999999988889999999
Q ss_pred eC
Q 011713 441 SY 442 (479)
Q Consensus 441 ~~ 442 (479)
+.
T Consensus 867 ~~ 868 (880)
T PRK03918 867 SL 868 (880)
T ss_pred Ee
Confidence 83
No 445
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.17 E-value=3.8e-11 Score=140.04 Aligned_cols=75 Identities=24% Similarity=0.293 Sum_probs=68.4
Q ss_pred CCCCCChhHHHHHHHHHHh----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEE
Q 011713 366 EGENWSVGQRQLFCLGRVL----LKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVL 440 (479)
Q Consensus 366 ~G~~LSgGQrQRlaiARAl----l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl 440 (479)
....||||||||++|||++ +++||++||||||++||+.+...+.+.|....++.++|+|||++..+..||+++.+
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 3457999999999999998 57889999999999999999999999999887788999999999999999998755
No 446
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.15 E-value=6.9e-11 Score=109.61 Aligned_cols=118 Identities=23% Similarity=0.269 Sum_probs=76.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC-CceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCCCCCHHHHH
Q 011713 262 RVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIW 340 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~~p~-~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~ 340 (479)
.+.|+||+||||||+++.|++.+++. .|.|..-+.++. +... ...+++.|.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~~---~~~~~i~q~------------------------ 54 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVHE---SKRSLINQR------------------------ 54 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cccc---Cccceeeec------------------------
Confidence 58999999999999999999988754 567665544431 1100 011111111
Q ss_pred HHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcE
Q 011713 341 EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGST 420 (479)
Q Consensus 341 ~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~T 420 (479)
.+|.+...++. ++++|+..+|+++++||+. |.++-..+ ++....+.+
T Consensus 55 ---------------------~vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~---l~~a~~G~~ 101 (198)
T cd01131 55 ---------------------EVGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLA---LTAAETGHL 101 (198)
T ss_pred ---------------------ccCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHH---HHHHHcCCE
Confidence 01111111111 5889999999999999996 66654333 334446889
Q ss_pred EEEEccCchhhhcCCEEEEE
Q 011713 421 VITIAHRVPTITDSDMVMVL 440 (479)
Q Consensus 421 vI~IaHrl~~i~~~D~I~vl 440 (479)
++.++|..+.....||++.+
T Consensus 102 v~~t~Ha~~~~~~~~Rl~~l 121 (198)
T cd01131 102 VMSTLHTNSAAKTIDRIIDV 121 (198)
T ss_pred EEEEecCCcHHHHHhHHHhh
Confidence 99999999887777777655
No 447
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.14 E-value=1.9e-10 Score=127.83 Aligned_cols=66 Identities=14% Similarity=0.150 Sum_probs=57.6
Q ss_pred hcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHC-CCcEEEEEccCchhh----------hcCCEEEEEeCCEEEEecC
Q 011713 385 LKRNRILILDEATASI-DSATDAILQRIIREEF-PGSTVITIAHRVPTI----------TDSDMVMVLSYGELVEYDL 450 (479)
Q Consensus 385 l~~p~iliLDE~TSaL-D~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i----------~~~D~I~vl~~G~Ive~G~ 450 (479)
..+|+++++|||+++| |+...+.+.+.+++.. .+.++|++||.++.+ ..||+.++|.+|++.+.|+
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 5799999999999999 6888889998888753 588999999999886 4799999999999977664
No 448
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.14 E-value=1.3e-10 Score=133.28 Aligned_cols=76 Identities=18% Similarity=0.093 Sum_probs=68.7
Q ss_pred CCCChhHHHHHHHHHHhhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CC
Q 011713 368 ENWSVGQRQLFCLGRVLLK----------RNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SD 435 (479)
Q Consensus 368 ~~LSgGQrQRlaiARAll~----------~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D 435 (479)
..|||||++|++||+||.. +|++|+|||||++||+++-..+.+.|.++. .++||++|||....... +|
T Consensus 949 ~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~~ 1028 (1042)
T TIGR00618 949 ATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIPH 1028 (1042)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhCC
Confidence 5799999999999999985 799999999999999999999999998764 47899999999998765 89
Q ss_pred EEEEEeCC
Q 011713 436 MVMVLSYG 443 (479)
Q Consensus 436 ~I~vl~~G 443 (479)
+|.|++.|
T Consensus 1029 ~i~v~~~~ 1036 (1042)
T TIGR00618 1029 RILVKKTN 1036 (1042)
T ss_pred EEEEEECC
Confidence 99999765
No 449
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=99.10 E-value=3.4e-10 Score=113.26 Aligned_cols=81 Identities=20% Similarity=0.292 Sum_probs=65.9
Q ss_pred HHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEEEEeCCCCCceee-----------eeeEEeeCCcEEEEE
Q 011713 198 IVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK-----------GITCTFKEGTRVGVV 266 (479)
Q Consensus 198 ~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~-----------~isl~i~~Ge~vaiv 266 (479)
..+.+|++++++.++.... .+ . ...+.++|+||+|.||++. ++|+ |+++.|.+||+++||
T Consensus 104 ~~~~ER~~~Ll~v~~vn~~-----~~-e--~~~~ri~Fe~LTf~YP~er-~~Le~~~~~~~~R~id~~~pig~Gq~~~Iv 174 (415)
T TIGR00767 104 PKEGERYFALLKVESVNGD-----DP-E--KAKNRVLFENLTPLYPNER-LRLETSTEDLSTRVLDLFAPIGKGQRGLIV 174 (415)
T ss_pred cccHhHHHHHhCCCccCCC-----Cc-c--ccCCCeEEEEeeecCCCcc-ceeecCccccceeeeeeEEEeCCCCEEEEE
Confidence 4578999999997654211 11 1 1346799999999998654 6897 999999999999999
Q ss_pred cCCCCcHHHHHHHHhccCCCC
Q 011713 267 GRTGSGKTTLISALFRLVEPE 287 (479)
Q Consensus 267 G~sGsGKSTL~~lL~g~~~p~ 287 (479)
||+|||||||+++|.+.+...
T Consensus 175 G~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 175 APPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCCCChhHHHHHHHHhhccc
Confidence 999999999999999998654
No 450
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.10 E-value=1.5e-10 Score=135.02 Aligned_cols=85 Identities=24% Similarity=0.330 Sum_probs=74.1
Q ss_pred cccccccCCC------CCCChhHHHHHHHHHHhh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccC
Q 011713 358 LLDSSVSDEG------ENWSVGQRQLFCLGRVLL----KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHR 427 (479)
Q Consensus 358 G~~T~vge~G------~~LSgGQrQRlaiARAll----~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHr 427 (479)
|++..+...| ..||||||++++||+++. ++||++|||||+++||+.....+.+.|....++.++|+|||+
T Consensus 1057 ~~~~~~~~~~~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~ 1136 (1164)
T TIGR02169 1057 GLELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLR 1136 (1164)
T ss_pred CeEEEEEcCCCCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECc
Confidence 4555554333 379999999999999997 578999999999999999999999999988888899999999
Q ss_pred chhhhcCCEEEEEeC
Q 011713 428 VPTITDSDMVMVLSY 442 (479)
Q Consensus 428 l~~i~~~D~I~vl~~ 442 (479)
..++..||+++.+..
T Consensus 1137 ~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1137 SPMIEYADRAIGVTM 1151 (1164)
T ss_pred HHHHHhcceeEeEEE
Confidence 999999999988754
No 451
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.09 E-value=8.3e-10 Score=98.27 Aligned_cols=129 Identities=21% Similarity=0.162 Sum_probs=77.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCCCCCHHHHHH
Q 011713 262 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWE 341 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~ 341 (479)
.++|.|++|+||||+++.+++...+..|.+.+-+.+... ...+.+. ...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~---~~~~~~~------------------~~~---------- 49 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI---EELTERL------------------IGE---------- 49 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch---HHHHHHH------------------hhh----------
Confidence 368999999999999999999988777777664433221 1111110 000
Q ss_pred HHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCH----------HHHHHHHHH
Q 011713 342 AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDS----------ATDAILQRI 411 (479)
Q Consensus 342 a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~----------~te~~i~~~ 411 (479)
.....++.. ..+.......+.++.++++.+++.-.+|+++|+||+++-++. ...+.+.+.
T Consensus 50 ---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l 119 (165)
T cd01120 50 ---------SLKGALDNL-IIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELREL 119 (165)
T ss_pred ---------hhccccccE-EEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 000000111 111111122344555578889999999999999999965544 434555555
Q ss_pred HHHHC-CCcEEEEEccCchhh
Q 011713 412 IREEF-PGSTVITIAHRVPTI 431 (479)
Q Consensus 412 l~~~~-~~~TvI~IaHrl~~i 431 (479)
+.... .+.|+|+++|.....
T Consensus 120 ~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 120 LERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHhcCCceEEEEEecCCcc
Confidence 44443 389999999988654
No 452
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.06 E-value=4.9e-09 Score=90.21 Aligned_cols=117 Identities=33% Similarity=0.361 Sum_probs=84.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCCCC-ceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCCCCCHH
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLVEPEN-GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDN 337 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~-G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~ 337 (479)
++..+.|+||+||||||+++.+++.+.... +.+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 478999999999999999999999987665 4555555333222211111
Q ss_pred HHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHH-------
Q 011713 338 EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQR------- 410 (479)
Q Consensus 338 ~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~------- 410 (479)
.....+......++..++..+++|-..+|+++++||+....+.........
T Consensus 51 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~ 108 (148)
T smart00382 51 ----------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLL 108 (148)
T ss_pred ----------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHH
Confidence 223334455678888999999999988899999999999999988765543
Q ss_pred HHHHHCCCcEEEEEccC
Q 011713 411 IIREEFPGSTVITIAHR 427 (479)
Q Consensus 411 ~l~~~~~~~TvI~IaHr 427 (479)
.......+..+|.++|.
T Consensus 109 ~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 109 LLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHhcCCCEEEEEeCC
Confidence 22334457788888884
No 453
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.05 E-value=4.1e-10 Score=105.07 Aligned_cols=79 Identities=24% Similarity=0.346 Sum_probs=65.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCC------------CCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHH
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLVE------------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVR 325 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~~------------p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~ 325 (479)
++|+.++|+||||||||||+++|++.++ |..|+ ++|.|+..++.+++++.+ .|+.+++.+|+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEEC
Confidence 5899999999999999999999999986 88898 699999999998888854 588889999999
Q ss_pred hhcCCCCCCCHHHHHHHHH
Q 011713 326 TNLDPLGMYSDNEIWEAME 344 (479)
Q Consensus 326 eNi~~~~~~~~~~i~~a~~ 344 (479)
+|. ++ .+.+.+.++++
T Consensus 78 ~~~-y~--~~~~~i~~~l~ 93 (205)
T PRK00300 78 GNY-YG--TPRSPVEEALA 93 (205)
T ss_pred Ccc-cc--CcHHHHHHHHH
Confidence 885 32 34555655543
No 454
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.02 E-value=2.2e-09 Score=100.59 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=80.5
Q ss_pred CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCC-CceEEECCeecCCCCHHHHhccceEEcCCCccccc-cH
Q 011713 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SV 324 (479)
Q Consensus 247 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~-~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~g-Ti 324 (479)
.+|-+|++|++++|++++|.||+|+||||+++.+....-.. .|.- ++- + +..++++ ..+|.. .-
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~----vpa-----~--~~~i~~~---~~i~~~~~~ 82 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMD----VPA-----K--SMRLSLV---DRIFTRIGA 82 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCc----cCc-----c--ccEeccc---cEEEEecCc
Confidence 46899999999999999999999999999999887542110 0100 000 0 0011111 111211 22
Q ss_pred HhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHH
Q 011713 325 RTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSAT 404 (479)
Q Consensus 325 ~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~t 404 (479)
.||+..+...=..|+ +|++-.=....+|.++|||||.+++|+..
T Consensus 83 ~d~~~~~~StF~~e~------------------------------------~~~~~il~~~~~~sLvLlDE~~~Gt~~~d 126 (218)
T cd03286 83 RDDIMKGESTFMVEL------------------------------------SETANILRHATPDSLVILDELGRGTSTHD 126 (218)
T ss_pred ccccccCcchHHHHH------------------------------------HHHHHHHHhCCCCeEEEEecccCCCCchH
Confidence 233321110001122 22211111124689999999999999987
Q ss_pred HHHHHHH-HHHHCC--CcEEEEEccCchhhhcC
Q 011713 405 DAILQRI-IREEFP--GSTVITIAHRVPTITDS 434 (479)
Q Consensus 405 e~~i~~~-l~~~~~--~~TvI~IaHrl~~i~~~ 434 (479)
...+..+ ++.+.+ ++++|++||..+.....
T Consensus 127 g~~la~ail~~L~~~~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 127 GYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHh
Confidence 6665555 444433 79999999998876553
No 455
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.98 E-value=6.3e-09 Score=99.19 Aligned_cols=74 Identities=19% Similarity=0.100 Sum_probs=51.8
Q ss_pred CCChhHHHHHHHHHHhhc--CCCEEEEeCCCCCCCH---HHHHHHHHHHHHH-CCCcEEEEEccCchh-------hh-cC
Q 011713 369 NWSVGQRQLFCLGRVLLK--RNRILILDEATASIDS---ATDAILQRIIREE-FPGSTVITIAHRVPT-------IT-DS 434 (479)
Q Consensus 369 ~LSgGQrQRlaiARAll~--~p~iliLDE~TSaLD~---~te~~i~~~l~~~-~~~~TvI~IaHrl~~-------i~-~~ 434 (479)
..|.++++.+..++..+. +|+++++||||+.+|. +.-..+.+.++.+ ..++|+++++|.... +. -+
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~ 179 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSIC 179 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhhe
Confidence 456788999999999998 8999999999965543 3333443344432 357899999997653 22 25
Q ss_pred CEEEEEeC
Q 011713 435 DMVMVLSY 442 (479)
Q Consensus 435 D~I~vl~~ 442 (479)
|-++.|+.
T Consensus 180 DgvI~L~~ 187 (234)
T PRK06067 180 DVYLKLRA 187 (234)
T ss_pred EEEEEEEe
Confidence 66776663
No 456
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.97 E-value=1.3e-09 Score=104.12 Aligned_cols=63 Identities=24% Similarity=0.352 Sum_probs=53.1
Q ss_pred CCChhHHHHHHHHHHhhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEccCchhh
Q 011713 369 NWSVGQRQLFCLGRVLLKRN---RILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTI 431 (479)
Q Consensus 369 ~LSgGQrQRlaiARAll~~p---~iliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaHrl~~i 431 (479)
.+|.|++|.+.|+-+++..+ .++++|||-++|.|...+.+.+.|.+..+ +.-+|+.||.+..+
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 45999999999999998776 89999999999999999999999988766 78999999998765
No 457
>PRK02224 chromosome segregation protein; Provisional
Probab=98.94 E-value=1.6e-09 Score=122.84 Aligned_cols=76 Identities=24% Similarity=0.309 Sum_probs=66.5
Q ss_pred CCCChhHHH------HHHHHHHhhcC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHCC-C-cEEEEEccCchhhhc
Q 011713 368 ENWSVGQRQ------LFCLGRVLLKR-----N-RILILDEATASIDSATDAILQRIIREEFP-G-STVITIAHRVPTITD 433 (479)
Q Consensus 368 ~~LSgGQrQ------RlaiARAll~~-----p-~iliLDE~TSaLD~~te~~i~~~l~~~~~-~-~TvI~IaHrl~~i~~ 433 (479)
..||||||| |+|+||++..+ | +++||||||++||+.....+.+.|..+.. + .++|+|||+...+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 489999999 99999999864 2 67999999999999999999988887653 3 489999999999999
Q ss_pred CCEEEEEeCC
Q 011713 434 SDMVMVLSYG 443 (479)
Q Consensus 434 ~D~I~vl~~G 443 (479)
||++++|...
T Consensus 860 ad~~~~~~~~ 869 (880)
T PRK02224 860 ADDLVRVEKD 869 (880)
T ss_pred cCeeEEeecC
Confidence 9999999754
No 458
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.93 E-value=1.7e-09 Score=110.33 Aligned_cols=86 Identities=19% Similarity=0.289 Sum_probs=71.2
Q ss_pred CccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEC---CeecCCCCHHHH
Q 011713 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID---GLDICSMGLKDL 306 (479)
Q Consensus 230 ~~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~---g~~i~~~~~~~l 306 (479)
.+.++.++++..|... ..+++.++ +|.+||+++|+|+||||||||++.|.|+.+|+.|.|.+. |.++.++..+.+
T Consensus 137 p~~~~r~~v~~~l~TG-i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 137 PPAMTRARVETGLRTG-VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCCeEeecceEEcCCC-cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 4568999999999644 34899996 999999999999999999999999999999999999885 577766554433
Q ss_pred ----hccceEEcCCC
Q 011713 307 ----RTKLSIIPQEP 317 (479)
Q Consensus 307 ----r~~i~~V~Q~~ 317 (479)
++.|++|+|..
T Consensus 215 ~~~r~rtI~vV~qsd 229 (450)
T PRK06002 215 ADNLKKAVAVVATSD 229 (450)
T ss_pred HHhhCCeEEEEEcCC
Confidence 35789998844
No 459
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.90 E-value=3.3e-09 Score=121.24 Aligned_cols=76 Identities=24% Similarity=0.176 Sum_probs=64.8
Q ss_pred CCCCChhHHHHHHHHHHhhc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCE
Q 011713 367 GENWSVGQRQLFCLGRVLLK--------RNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDM 436 (479)
Q Consensus 367 G~~LSgGQrQRlaiARAll~--------~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~ 436 (479)
-..|||||+|+++|||||.. +|++|+|||||++||+.+-..+++.|..+. .|+||++|||-...... ..+
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~q 1026 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQ 1026 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccce
Confidence 36799999999999999995 899999999999999999999999998874 58999999996666555 455
Q ss_pred EEEEeC
Q 011713 437 VMVLSY 442 (479)
Q Consensus 437 I~vl~~ 442 (479)
|.|-..
T Consensus 1027 i~V~k~ 1032 (1047)
T PRK10246 1027 IKVKKI 1032 (1047)
T ss_pred EEEEEC
Confidence 666544
No 460
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.80 E-value=1.4e-09 Score=114.46 Aligned_cols=156 Identities=17% Similarity=0.171 Sum_probs=97.5
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHH--hccCCCCCceEEECCeecCCCCHHHHhcc---ceEEcCCCccccccHHhhcCC
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISAL--FRLVEPENGRILIDGLDICSMGLKDLRTK---LSIIPQEPTLFRGSVRTNLDP 330 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL--~g~~~p~~G~I~i~g~~i~~~~~~~lr~~---i~~V~Q~~~lF~gTi~eNi~~ 330 (479)
=+++|..+.|.|++|||||||..-+ .|.-++.+..+++.. +-++++++++ +++-.|+..- .+++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~----eE~~~~l~~~~~~~G~~~~~~~~-----~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF----EESPQDIIKNARSFGWDLQKLVD-----EGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE----ecCHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence 4789999999999999999999866 355555566777765 2355555554 4444332210 112221
Q ss_pred CCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHH--HHhhcCCCEEEEeCCCCCCCHHHHHHH
Q 011713 331 LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG--RVLLKRNRILILDEATASIDSATDAIL 408 (479)
Q Consensus 331 ~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiA--RAll~~p~iliLDE~TSaLD~~te~~i 408 (479)
....+.......++..++.+++..++ ..+|+|++||+.|+ .++..+|+.. ....+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~l~~i~-----------~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l 146 (484)
T TIGR02655 88 LDASPDPEGQDVVGGFDLSALIERIN-----------YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREI 146 (484)
T ss_pred EecCchhccccccccCCHHHHHHHHH-----------HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHH
Confidence 11011111112344556666665554 46899999999999 6776665443 3455566
Q ss_pred HHHHHHHC-CCcEEEEEccCchh--------h-h-cCCEEEEEe
Q 011713 409 QRIIREEF-PGSTVITIAHRVPT--------I-T-DSDMVMVLS 441 (479)
Q Consensus 409 ~~~l~~~~-~~~TvI~IaHrl~~--------i-~-~~D~I~vl~ 441 (479)
.+.++.+. .++|+|+++|.... + + -||.|+.|+
T Consensus 147 ~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 147 FRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 66665543 48999999998753 2 3 379999887
No 461
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.78 E-value=7.6e-08 Score=85.53 Aligned_cols=83 Identities=20% Similarity=0.227 Sum_probs=64.0
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEE
Q 011713 369 NWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELV 446 (479)
Q Consensus 369 ~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Iv 446 (479)
..|-||-=-=-+.|.+ ++.-|+|||||-|+|.|.-+-.+...|+++. .|.-+|+.||.+=.+.. --.|+-++.|-+.
T Consensus 129 ~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~~ 207 (233)
T COG3910 129 HMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGIE 207 (233)
T ss_pred hhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCcc
Confidence 4588887665666665 4678999999999999999999998888865 47889999999876654 4688989888754
Q ss_pred EecChhh
Q 011713 447 EYDLPSN 453 (479)
Q Consensus 447 e~G~~~e 453 (479)
+ -+++|
T Consensus 208 ~-~~fe~ 213 (233)
T COG3910 208 E-RDFEE 213 (233)
T ss_pred c-cchHH
Confidence 3 34444
No 462
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.77 E-value=1.2e-07 Score=106.16 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=47.3
Q ss_pred HHHHhhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc
Q 011713 380 LGRVLLKRNRILILDEATASI-DSATDAILQRIIREEF-PGSTVITIAHRVPTITD 433 (479)
Q Consensus 380 iARAll~~p~iliLDE~TSaL-D~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~ 433 (479)
|+|++..+|+++++|||++.| |+...+.+.+.++... .+.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 788999999999999999999 6888888888887653 58899999999998764
No 463
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.76 E-value=5.3e-08 Score=97.80 Aligned_cols=173 Identities=22% Similarity=0.253 Sum_probs=117.5
Q ss_pred EEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHh-ccCCCCCceEEECCeecCCCCHHHHhccceEEcCC
Q 011713 238 LKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF-RLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQE 316 (479)
Q Consensus 238 vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~-g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~ 316 (479)
|+|..|... .+.+ +-||+| .+.|||..=-|||||++.|. |.|+---| ||. +.+-..+
T Consensus 227 ve~~LP~~g--~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGR-----------E~VVT~~-- 284 (448)
T PF09818_consen 227 VEIELPNGG--TVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGR-----------EFVVTDP-- 284 (448)
T ss_pred EEEECCCCC--EEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCc-----------eEEEECC--
Confidence 677766533 4555 468999 99999999999999999997 77775444 442 1111111
Q ss_pred CccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCC
Q 011713 317 PTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEA 396 (479)
Q Consensus 317 ~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~ 396 (479)
+-... .+.|- +..+.+.+..||.+||.|.||.-- .-.+=||---|=-.|..|+=..+++|++||=
T Consensus 285 ---------~avki--rAEDG---R~V~~vDISpFI~~LP~g~dT~~F-sT~~ASGSTSqAAnI~EAlE~Ga~~LLiDED 349 (448)
T PF09818_consen 285 ---------DAVKI--RAEDG---RSVEGVDISPFINNLPGGKDTTCF-STENASGSTSQAANIMEALEAGARLLLIDED 349 (448)
T ss_pred ---------CceEE--EecCC---ceEeCccchHHHhhCCCCCCCCcc-cccCCCchHHHHHHHHHHHHcCCCEEEEcCc
Confidence 00000 11111 234567788999999999999832 2246699999999999999999999999999
Q ss_pred CCCC-----CHHHHHHH-------------HHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEE
Q 011713 397 TASI-----DSATDAIL-------------QRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVE 447 (479)
Q Consensus 397 TSaL-----D~~te~~i-------------~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive 447 (479)
|||- |...++.+ ...+.+...-.|++++.--=..+.-||+|++||+=+..+
T Consensus 350 tsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~~d 418 (448)
T PF09818_consen 350 TSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRPKD 418 (448)
T ss_pred ccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccchh
Confidence 9996 55556555 223333333334444444445678899999999876543
No 464
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.76 E-value=1.1e-08 Score=102.95 Aligned_cols=87 Identities=26% Similarity=0.306 Sum_probs=65.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCC--CC-ceEEECCeecCCCCHHHHhccceEEcCCCc-----cccccHHhhcC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLVEP--EN-GRILIDGLDICSMGLKDLRTKLSIIPQEPT-----LFRGSVRTNLD 329 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~~p--~~-G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~-----lF~gTi~eNi~ 329 (479)
++|..++|+||+||||||+++.|++++.+ .+ +.|.....|+ ++..+.++...++|+|... -|..+++++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 48999999999999999999999999843 33 4676666565 5777777777888888643 58888999886
Q ss_pred CCC------CC-CHHHHHHHHHH
Q 011713 330 PLG------MY-SDNEIWEAMEK 345 (479)
Q Consensus 330 ~~~------~~-~~~~i~~a~~~ 345 (479)
..+ +. +.|.+..|++.
T Consensus 211 ~~Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 211 RKPHAILVGEARDAETISAALEA 233 (358)
T ss_pred cCCCEEeeeeeCCHHHHHHHHHH
Confidence 433 33 44556667777
No 465
>PRK01889 GTPase RsgA; Reviewed
Probab=98.75 E-value=5.9e-09 Score=105.22 Aligned_cols=97 Identities=21% Similarity=0.266 Sum_probs=73.6
Q ss_pred eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhc
Q 011713 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL 328 (479)
Q Consensus 249 vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi 328 (479)
-++.+.-.+++|++++++|+||+|||||++.|+|...|..|+|.+++..-.. ...++++.+++|+.++|+.+-..|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 3566666788999999999999999999999999999999999998754332 2345689999999999998877777
Q ss_pred CCCCC-----CCHHHHHHHHHHccH
Q 011713 329 DPLGM-----YSDNEIWEAMEKCQL 348 (479)
Q Consensus 329 ~~~~~-----~~~~~i~~a~~~a~l 348 (479)
.+... ....++.+.++.|..
T Consensus 261 ~l~~~~~~l~~~f~~~~~~~~~c~f 285 (356)
T PRK01889 261 QLWDAEDGVEETFSDIEELAAQCRF 285 (356)
T ss_pred cccCchhhHHHhHHHHHHHHccCCC
Confidence 65321 112345555555543
No 466
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.75 E-value=6.7e-09 Score=106.05 Aligned_cols=80 Identities=19% Similarity=0.303 Sum_probs=63.2
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCc---eEEECCeecCCCCHHHH------hccceEEcCCCc
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG---RILIDGLDICSMGLKDL------RTKLSIIPQEPT 318 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G---~I~i~g~~i~~~~~~~l------r~~i~~V~Q~~~ 318 (479)
.+++++ |++.+||+++|+|+||||||||+++|+|+++|+.+ .|-.+|.+++++..+.+ |..+++++|+..
T Consensus 144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s 222 (434)
T PRK07196 144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADES 222 (434)
T ss_pred eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCC
Confidence 489999 99999999999999999999999999999999864 34445556655544444 557899999987
Q ss_pred cccc-cHHhhc
Q 011713 319 LFRG-SVRTNL 328 (479)
Q Consensus 319 lF~g-Ti~eNi 328 (479)
.+.. ++.+|+
T Consensus 223 ~~~rl~a~e~a 233 (434)
T PRK07196 223 PLMRIKATELC 233 (434)
T ss_pred hhhhHHHHHHH
Confidence 6643 566665
No 467
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.73 E-value=1.1e-08 Score=93.85 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=57.1
Q ss_pred eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCc--ccc-ccHH
Q 011713 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT--LFR-GSVR 325 (479)
Q Consensus 249 vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~--lF~-gTi~ 325 (479)
..+=+.+.+++|+.++|+||+||||||+++.|+++++|+.|.|.+.+.+-..++ .+..++++.|.+. .+. -|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 445566789999999999999999999999999999999999999775432221 2445667666543 222 3666
Q ss_pred hhc
Q 011713 326 TNL 328 (479)
Q Consensus 326 eNi 328 (479)
+++
T Consensus 91 ~~l 93 (186)
T cd01130 91 DLL 93 (186)
T ss_pred HHH
Confidence 665
No 468
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.71 E-value=1.1e-08 Score=105.90 Aligned_cols=159 Identities=19% Similarity=0.242 Sum_probs=91.8
Q ss_pred eeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcC
Q 011713 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 329 (479)
Q Consensus 250 L~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~ 329 (479)
+++.++.+++|+.+++|||||+||||++..|++.+.+..|.. +|++|++|+ |.-+..|||.
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQLr 306 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQLR 306 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHHH
Confidence 344555567899999999999999999999999887776642 578899888 5566778875
Q ss_pred CCC-----C----CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHH-HHHHHHHHhhcCC-----CEEEEe
Q 011713 330 PLG-----M----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR-QLFCLGRVLLKRN-----RILILD 394 (479)
Q Consensus 330 ~~~-----~----~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQr-QRlaiARAll~~p-----~iliLD 394 (479)
.+. . .+..+... .+..+.+.....|..-|.+ |+ ..+.-+.+++.++ .+|+||
T Consensus 307 ~~AeilGVpv~~~~~~~Dl~~---------aL~~L~d~d~VLIDTaGr~----~~d~~~~e~~~~l~~~~~p~e~~LVLd 373 (484)
T PRK06995 307 IYGKILGVPVHAVKDAADLRL---------ALSELRNKHIVLIDTIGMS----QRDRMVSEQIAMLHGAGAPVKRLLLLN 373 (484)
T ss_pred HHHHHhCCCeeccCCchhHHH---------HHHhccCCCeEEeCCCCcC----hhhHHHHHHHHHHhccCCCCeeEEEEe
Confidence 211 1 11222221 2233433333344443321 21 1233344445454 689999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhh----------cCCEEEEEeCCEEE
Q 011713 395 EATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT----------DSDMVMVLSYGELV 446 (479)
Q Consensus 395 E~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~----------~~D~I~vl~~G~Iv 446 (479)
..|.. ..+.+.++... .+.+-+++|+--++.+ .-=-|..+-.|+=|
T Consensus 374 At~~~------~~l~~i~~~f~~~~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~V 430 (484)
T PRK06995 374 ATSHG------DTLNEVVQAYRGPGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRV 430 (484)
T ss_pred CCCcH------HHHHHHHHHhccCCCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCCC
Confidence 98877 23333333322 2566777776433221 12236677777644
No 469
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.71 E-value=2.6e-08 Score=95.27 Aligned_cols=44 Identities=18% Similarity=0.375 Sum_probs=34.8
Q ss_pred hhcCCCEEEEeCCCCC------CCHHHHHHHHHHHHHHC--CCcEEEEEccCc
Q 011713 384 LLKRNRILILDEATAS------IDSATDAILQRIIREEF--PGSTVITIAHRV 428 (479)
Q Consensus 384 ll~~p~iliLDE~TSa------LD~~te~~i~~~l~~~~--~~~TvI~IaHrl 428 (479)
..++|+++|+| |+++ +|+..-..+.+.+.+.. .++|+|+++|..
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 35799999999 7654 68887777888877654 379999999976
No 470
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.71 E-value=1.5e-09 Score=117.71 Aligned_cols=28 Identities=36% Similarity=0.488 Sum_probs=24.1
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhccCC
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVE 285 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~ 285 (479)
++++| +.|+||+|+||||+++.+++...
T Consensus 183 ~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 183 KIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred CCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 55666 99999999999999999988653
No 471
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.66 E-value=1e-07 Score=95.96 Aligned_cols=120 Identities=21% Similarity=0.220 Sum_probs=76.8
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCCCCC
Q 011713 257 FKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYS 335 (479)
Q Consensus 257 i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~~~ 335 (479)
.+++..+.|.||+||||||+++.|++.+++ .+|.|..-+.++.-. .......+.|
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q-------------------- 174 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQ-------------------- 174 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEc--------------------
Confidence 357899999999999999999999997764 467776544332110 0000000000
Q ss_pred HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 011713 336 DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREE 415 (479)
Q Consensus 336 ~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~ 415 (479)
..+|..+.. --=++++||-.+|+++++||+. |+++.....++ .
T Consensus 175 -------------------------~evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a---a 217 (343)
T TIGR01420 175 -------------------------REVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALTA---A 217 (343)
T ss_pred -------------------------cccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH---H
Confidence 011111111 1235778898999999999997 88887654443 3
Q ss_pred CCCcEEEEEccCchhhhcCCEE
Q 011713 416 FPGSTVITIAHRVPTITDSDMV 437 (479)
Q Consensus 416 ~~~~TvI~IaHrl~~i~~~D~I 437 (479)
..|.+++...|..+.....+|+
T Consensus 218 ~tGh~v~~T~Ha~~~~~~~~Rl 239 (343)
T TIGR01420 218 ETGHLVFGTLHTNSAAQTIERI 239 (343)
T ss_pred HcCCcEEEEEcCCCHHHHHHHH
Confidence 4588999999997766544444
No 472
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.64 E-value=4.7e-08 Score=98.99 Aligned_cols=63 Identities=22% Similarity=0.338 Sum_probs=56.6
Q ss_pred CCCChhHHHHHHHHHHhhc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh
Q 011713 368 ENWSVGQRQLFCLGRVLLK---------RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT 432 (479)
Q Consensus 368 ~~LSgGQrQRlaiARAll~---------~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~ 432 (479)
..+|.||+++++||.++.. +|||||||||+|.||+.....+.+.|.+. +.+++++||.+..+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 3589999999999999999 99999999999999999999999998753 679999999987654
No 473
>PRK08149 ATP synthase SpaL; Validated
Probab=98.60 E-value=4.8e-08 Score=99.67 Aligned_cols=66 Identities=24% Similarity=0.348 Sum_probs=57.7
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCC---ceEEECCeecCCCCHHHHh----ccceEEc
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN---GRILIDGLDICSMGLKDLR----TKLSIIP 314 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~---G~I~i~g~~i~~~~~~~lr----~~i~~V~ 314 (479)
.+++++ +++.+||+++|+|+||+|||||++.|++..+++. |.|-.+|.++.++..+.++ +++++|.
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~ 212 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVY 212 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEE
Confidence 489999 9999999999999999999999999999999988 9999999999887766654 4455553
No 474
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.57 E-value=6.1e-08 Score=89.01 Aligned_cols=56 Identities=23% Similarity=0.313 Sum_probs=48.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCc
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~ 318 (479)
|+.++|+||||||||||+++|.+...| .+.+++..+........++.+++++|+..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEFF 57 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHHH
Confidence 789999999999999999999999876 58888888887766677788889988753
No 475
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.53 E-value=6.6e-07 Score=92.23 Aligned_cols=180 Identities=18% Similarity=0.147 Sum_probs=116.0
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhh
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN 327 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eN 327 (479)
.+++++ +++.+||+++|+|+||+|||||++.|+|..+|+.|.+...|..-+++. ++.+. ++.+.-.++
T Consensus 152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~--~~~~~---------~~~~~~l~~ 219 (440)
T TIGR01026 152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVR--EFIEH---------DLGEEGLKR 219 (440)
T ss_pred eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHH--HHHHH---------Hhcccccce
Confidence 489999 999999999999999999999999999999999988777665544322 11111 111111122
Q ss_pred cC-C---CCCCCHHHHHHHHHHccHHHHHHhCCcccccccc-CCCCCCChhHHHHHHHHHHhhcCCCEEEEeC--CCCCC
Q 011713 328 LD-P---LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVS-DEGENWSVGQRQLFCLGRVLLKRNRILILDE--ATASI 400 (479)
Q Consensus 328 i~-~---~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vg-e~G~~LSgGQrQRlaiARAll~~p~iliLDE--~TSaL 400 (479)
-. . .++..-+++..+.-.+-+.++... +|+|-.+= +.=+++- |.|| .++ +.+.| .+.+.
T Consensus 220 tvvv~~~~d~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~DslTr~A--~A~R-Eis---------l~~ge~P~~~Gy 285 (440)
T TIGR01026 220 SVVVVATSDQSPLLRLKGAYVATAIAEYFRD--QGKDVLLLMDSVTRFA--MAQR-EIG---------LAAGEPPATKGY 285 (440)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeChHHHH--HHHH-HHH---------HhcCCCCccccc
Confidence 11 1 123344555555555555566654 47776542 3222221 1222 111 12344 35689
Q ss_pred CHHHHHHHHHHHHHHCC-Cc-------EEEEEccCchhhhcCCEEEEEeCCEEEEecChhhh
Q 011713 401 DSATDAILQRIIREEFP-GS-------TVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 401 D~~te~~i~~~l~~~~~-~~-------TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eL 454 (479)
|+..-..+.+.+++... ++ |+++-+|++ +=.-+|++.-+.+|+|+-.++-++.
T Consensus 286 pp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~-~dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 286 TPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDM-NEPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred ChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCC-CcchhhhhccccceEEEEecchhhC
Confidence 99988888888877543 46 888889998 3445899999999999987765554
No 476
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.53 E-value=4e-07 Score=95.12 Aligned_cols=64 Identities=23% Similarity=0.262 Sum_probs=56.8
Q ss_pred EEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCC
Q 011713 235 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 300 (479)
Q Consensus 235 ~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~ 300 (479)
++|++..|+. ..+++++++.+.+|+.++++|++|||||||++.|.|+.+|.+|++.+++..|..
T Consensus 187 ~~d~~~v~Gq--~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s 250 (506)
T PRK09862 187 QHDLSDVIGQ--EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILS 250 (506)
T ss_pred ccCeEEEECc--HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhh
Confidence 5588888853 348999999999999999999999999999999999999999999999876643
No 477
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.52 E-value=2e-07 Score=86.41 Aligned_cols=106 Identities=28% Similarity=0.325 Sum_probs=68.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCCCCCHHHHHH
Q 011713 262 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWE 341 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~ 341 (479)
+++|+|++|||||||++.+.+.+.+..| +.+-..|.......++....++++|+..+. +..|-+.......+-
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~~~~~--- 75 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERILG---VETGGCPHTAIREDA--- 75 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCceeh---hhcCCCccceeccCH---
Confidence 6899999999999999999999888655 555556776666677777889999987652 111222111111111
Q ss_pred HHHHccHHHHHHhCCccccccccCCCCCCChhH
Q 011713 342 AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 374 (479)
Q Consensus 342 a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQ 374 (479)
+...+.+.+++.++|++-.+.|+-.|..+|.-.
T Consensus 76 ~~~~~~L~~l~~~~~~~D~iiIEt~G~~l~~~~ 108 (199)
T TIGR00101 76 SMNLEAVAEMEARFPPLEMVFIESGGDNLSATF 108 (199)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCCccccc
Confidence 122334556666777555567777776666554
No 478
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.52 E-value=6.2e-08 Score=89.84 Aligned_cols=106 Identities=19% Similarity=0.180 Sum_probs=59.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHh-----hcCCC--CCC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT-----NLDPL--GMY 334 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~e-----Ni~~~--~~~ 334 (479)
.++|+|+||||||||++.|.+++ ..|.+.+-+.| .+...-+.++ +..+. ...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD-------------------SYYKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec-------------------ccccccccccHHHhccCCCCCCCcc
Confidence 37999999999999999999998 34444443333 2221111111 11111 122
Q ss_pred CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCH
Q 011713 335 SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDS 402 (479)
Q Consensus 335 ~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~ 402 (479)
+.+.+.+.+.... .|- .+.-...+.|.|++++-.+ .+.+|+++|+|.|.+..++
T Consensus 60 ~~~~~~~~l~~l~---------~~~--~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 60 DFDLLISHLQDLK---------NGK--SVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred cHHHHHHHHHHHH---------CCC--CEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 3333333333221 111 1111224567777765544 5688999999999999876
No 479
>PLN02796 D-glycerate 3-kinase
Probab=98.48 E-value=3.9e-08 Score=97.14 Aligned_cols=62 Identities=24% Similarity=0.360 Sum_probs=53.7
Q ss_pred CceeeeeeEEe---eCCcE-----EEEEcCCCCcHHHHHHHHhccCCCC---CceEEECCeecCCCCHHHHhc
Q 011713 247 PLVLKGITCTF---KEGTR-----VGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDLRT 308 (479)
Q Consensus 247 ~~vL~~isl~i---~~Ge~-----vaivG~sGsGKSTL~~lL~g~~~p~---~G~I~i~g~~i~~~~~~~lr~ 308 (479)
.++++++++++ ++|+. +||+|+||||||||++.|.+++.+. .|.|.+||..+.......+++
T Consensus 79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 45899999998 67887 9999999999999999999999875 688999999887766666665
No 480
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.45 E-value=3.8e-06 Score=94.07 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=39.0
Q ss_pred eeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCe
Q 011713 252 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL 296 (479)
Q Consensus 252 ~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~ 296 (479)
-+|+++.++..++|+|+||||||||++.|++.+....++|.+-+.
T Consensus 438 ~~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i~~~D~ 482 (800)
T PRK13898 438 YFNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFFFDK 482 (800)
T ss_pred EEEEEEcCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeEEEeCC
Confidence 457888889999999999999999999999988887888777554
No 481
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.44 E-value=5.3e-07 Score=85.86 Aligned_cols=134 Identities=22% Similarity=0.266 Sum_probs=78.6
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhcc-CCC------CCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcC
Q 011713 257 FKEGTRVGVVGRTGSGKTTLISALFRL-VEP------ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 329 (479)
Q Consensus 257 i~~Ge~vaivG~sGsGKSTL~~lL~g~-~~p------~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~ 329 (479)
+++|+.+.|+|++|||||||+.-++.. ..| ..+.+++++.+ .++.+.+++.. |.......++.+|+.
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~--~~~~~rl~~~~----~~~~~~~~~~~~~i~ 89 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG--TFRPERLVQIA----ERFGLDPEEVLDNIY 89 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC--CcCHHHHHHHH----HHhccChHhHhcCEE
Confidence 789999999999999999999988633 334 37889998865 34455544432 111112245677776
Q ss_pred CCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCC----CHH--
Q 011713 330 PLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASI----DSA-- 403 (479)
Q Consensus 330 ~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaL----D~~-- 403 (479)
+....+.+++.+.++. +.+.+.+- .+++++++|-.++-. +..
T Consensus 90 ~~~~~~~~~l~~~l~~--l~~~l~~~------------------------------~~~~liVIDSis~~~~~~~~~~~~ 137 (235)
T cd01123 90 VARAYNSDHQLQLLEE--LEAILIES------------------------------SRIKLVIVDSVTALFRAEFDGRGE 137 (235)
T ss_pred EEecCCHHHHHHHHHH--HHHHHhhc------------------------------CCeeEEEEeCcHHHHHHHhcCCcc
Confidence 5444455555443332 22222211 168999999988632 111
Q ss_pred -HH--H---HHHHHHHHHC--CCcEEEEEccCc
Q 011713 404 -TD--A---ILQRIIREEF--PGSTVITIAHRV 428 (479)
Q Consensus 404 -te--~---~i~~~l~~~~--~~~TvI~IaHrl 428 (479)
.+ + .+...|+++. .++|+|++.|-.
T Consensus 138 ~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~ 170 (235)
T cd01123 138 LAERQQHLAKLLRTLKRLADEFNVAVVITNQVT 170 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEe
Confidence 11 2 3334444332 478888776643
No 482
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.44 E-value=3.3e-07 Score=83.45 Aligned_cols=62 Identities=23% Similarity=0.318 Sum_probs=46.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEE-----------CCeecCCCCHHHHh-----ccceEEcCCCccccc
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILI-----------DGLDICSMGLKDLR-----TKLSIIPQEPTLFRG 322 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i-----------~g~~i~~~~~~~lr-----~~i~~V~Q~~~lF~g 322 (479)
|+.++|+|||||||||+++.|++.+.+. |.+.+ +|.+...++.+++. +.++.+.|...++.|
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 55544 66676666666653 347788887655554
No 483
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.43 E-value=2e-07 Score=85.00 Aligned_cols=78 Identities=24% Similarity=0.348 Sum_probs=54.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC------------CCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhh
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLVE------------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN 327 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~~------------p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eN 327 (479)
|+.++|+||||||||||++.|++.++ |..|+ ++|.+..-++.+.+.+.+ +++.+++.+++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 78999999999999999999999874 33343 356555555555665553 57777777777777
Q ss_pred cCCCCCCCHHHHHHHHHH
Q 011713 328 LDPLGMYSDNEIWEAMEK 345 (479)
Q Consensus 328 i~~~~~~~~~~i~~a~~~ 345 (479)
. ++ .+.+.+.++++.
T Consensus 76 ~-y~--~~~~~i~~~~~~ 90 (180)
T TIGR03263 76 Y-YG--TPKSPVEEALAA 90 (180)
T ss_pred e-eC--CcHHHHHHHHHC
Confidence 4 22 345566666544
No 484
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.43 E-value=7.6e-07 Score=103.51 Aligned_cols=44 Identities=36% Similarity=0.511 Sum_probs=37.0
Q ss_pred eeEEeeCCcEEEEEcCCCCcHHHHHHHHh-ccCCCCCceEEECCe
Q 011713 253 ITCTFKEGTRVGVVGRTGSGKTTLISALF-RLVEPENGRILIDGL 296 (479)
Q Consensus 253 isl~i~~Ge~vaivG~sGsGKSTL~~lL~-g~~~p~~G~I~i~g~ 296 (479)
+++..+.++.++|+|++|+|||||++.+. ++....+|.+++++.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 46677889999999999999999999995 555566899998763
No 485
>PRK15494 era GTPase Era; Provisional
Probab=98.42 E-value=1.5e-07 Score=94.48 Aligned_cols=54 Identities=26% Similarity=0.308 Sum_probs=49.7
Q ss_pred CCccEEEEeEEEEeCCCCCceeeeeeEEeeCCc-------EEEEEcCCCCcHHHHHHHHhcc
Q 011713 229 SHGRIELEDLKVRYRPNTPLVLKGITCTFKEGT-------RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 229 ~~~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge-------~vaivG~sGsGKSTL~~lL~g~ 283 (479)
..|.+++++++|+|+ ..+++++++++++++|+ +|+|||++|+|||||++.|.|-
T Consensus 15 ~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 15 FKGDTEALAAAVRED-ASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred hCCccccccccccCC-CCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 467899999999999 55679999999999999 9999999999999999999875
No 486
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.40 E-value=2e-07 Score=95.52 Aligned_cols=100 Identities=22% Similarity=0.316 Sum_probs=71.6
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCceEEE---CCeecCCCCHHHHh---ccceEE-----cC
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILI---DGLDICSMGLKDLR---TKLSII-----PQ 315 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-~~G~I~i---~g~~i~~~~~~~lr---~~i~~V-----~Q 315 (479)
.+++++ |++.+||+++|+|+||||||||++.|+|+.++ +.|.|.+ .|.++.++..+.++ .+.++| +|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q 231 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ 231 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence 378888 99999999999999999999999999999844 4467776 55777776666665 235566 89
Q ss_pred CCc------cccccHHhhcCCC-CC-----CCHHHHHHHHHHccH
Q 011713 316 EPT------LFRGSVRTNLDPL-GM-----YSDNEIWEAMEKCQL 348 (479)
Q Consensus 316 ~~~------lF~gTi~eNi~~~-~~-----~~~~~i~~a~~~a~l 348 (479)
+|. ....+|.|.+... .+ -+..++.+|++.+++
T Consensus 232 ~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 232 SSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred CHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCc
Confidence 774 2234677777422 22 134566677777766
No 487
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.39 E-value=1.6e-06 Score=74.99 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC------CCcEEEEEccCch
Q 011713 375 RQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF------PGSTVITIAHRVP 429 (479)
Q Consensus 375 rQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~------~~~TvI~IaHrl~ 429 (479)
.+.....++...++.++++||+-.. ++.....+.+.+.... .+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5666677777889999999998765 5556667777777653 4678888888654
No 488
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.39 E-value=3.3e-07 Score=83.25 Aligned_cols=53 Identities=26% Similarity=0.369 Sum_probs=41.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhc-cceEEcCCC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT-KLSIIPQEP 317 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~-~i~~V~Q~~ 317 (479)
+||.++|+|+|||||||+++.|++++.| +.++|.++.. ...+|+ ..++.+|+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~--~~~~r~~~~g~~~~~~ 55 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHP--AKNIDKMSQGIPLTDE 55 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCC--HhHHHHHhcCCCCCcc
Confidence 6999999999999999999999999887 6899988743 233443 345555553
No 489
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.38 E-value=5.5e-07 Score=105.36 Aligned_cols=61 Identities=25% Similarity=0.244 Sum_probs=54.6
Q ss_pred CCCCChhHHHHHH----HHHH--------hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCch
Q 011713 367 GENWSVGQRQLFC----LGRV--------LLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVP 429 (479)
Q Consensus 367 G~~LSgGQrQRla----iARA--------ll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~ 429 (479)
...||||||||++ +|+| +..+|++++|||||+++|+.+...+++.+.++ +.++|++||++-
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSEREW 1317 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccchh
Confidence 4689999999996 6766 55799999999999999999999999999887 789999999874
No 490
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.37 E-value=1.6e-06 Score=93.68 Aligned_cols=110 Identities=16% Similarity=0.243 Sum_probs=68.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCCCCc--------eEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENG--------RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 330 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G--------~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~ 330 (479)
..+.+.|+||+|+||||+++++.++..+..| -|.+||.++. ++...+. ++ +|. ++.++.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i~--------~~-llg-~~~~~~-- 240 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREVT--------NP-LLG-SVHDPI-- 240 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHHh--------HH-hcC-CccHHH--
Confidence 3567999999999999999999999865444 4888886653 3332221 11 111 111110
Q ss_pred CCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHH
Q 011713 331 LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQR 410 (479)
Q Consensus 331 ~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~ 410 (479)
.+...+.++..++.+.... . -..+||| +|+||| +..||+.....+.+
T Consensus 241 -----~~~a~~~l~~~gl~~~~~g-------~----v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 241 -----YQGARRDLAETGVPEPKTG-------L----VTDAHGG----------------VLFIDE-IGELDPLLQNKLLK 287 (615)
T ss_pred -----HHHHHHHHHHcCCCchhcC-------c----hhhcCCC----------------eEEEec-cccCCHHHHHHHHH
Confidence 1222333444444322211 1 1356777 999999 79999999999988
Q ss_pred HHHH
Q 011713 411 IIRE 414 (479)
Q Consensus 411 ~l~~ 414 (479)
.+++
T Consensus 288 ~Le~ 291 (615)
T TIGR02903 288 VLED 291 (615)
T ss_pred HHhh
Confidence 8865
No 491
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.37 E-value=5.3e-06 Score=78.71 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=39.5
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHh-ccCCCCCceEEECCeecCCCCHHHH---hccceEEcCC
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALF-RLVEPENGRILIDGLDICSMGLKDL---RTKLSIIPQE 316 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~-g~~~p~~G~I~i~g~~i~~~~~~~l---r~~i~~V~Q~ 316 (479)
=+++|+.++|.|++|||||||+..++ ....+.++.+++.. +.+.+++ .+.+++.+|+
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~----e~~~~~i~~~~~~~g~~~~~ 76 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT----EESRESIIRQAAQFGMDFEK 76 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc----cCCHHHHHHHHHHhCCCHHH
Confidence 48899999999999999999988654 34455666777766 2333443 2345555554
No 492
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.36 E-value=9.7e-07 Score=100.14 Aligned_cols=78 Identities=26% Similarity=0.317 Sum_probs=66.3
Q ss_pred CCCCChhHHHHHH------HHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEccCchhhhcCCEE
Q 011713 367 GENWSVGQRQLFC------LGRVLLKR--NRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITDSDMV 437 (479)
Q Consensus 367 G~~LSgGQrQRla------iARAll~~--p~iliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaHrl~~i~~~D~I 437 (479)
-..|||||+=.++ ||..+-.+ -+.++|||||.+||+++-..+.++|.+... +++||+|||.-.....+|.+
T Consensus 813 ~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~~ 892 (908)
T COG0419 813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADVR 892 (908)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCeE
Confidence 3589999987554 45555667 699999999999999999999999988765 69999999999999999999
Q ss_pred EEEeCCE
Q 011713 438 MVLSYGE 444 (479)
Q Consensus 438 ~vl~~G~ 444 (479)
+.++...
T Consensus 893 i~V~k~~ 899 (908)
T COG0419 893 IRVKKDG 899 (908)
T ss_pred EEEEecC
Confidence 9987643
No 493
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.34 E-value=3.3e-07 Score=79.77 Aligned_cols=73 Identities=25% Similarity=0.357 Sum_probs=54.9
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCC-------------CCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcC
Q 011713 263 VGVVGRTGSGKTTLISALFRLVEP-------------ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 329 (479)
Q Consensus 263 vaivG~sGsGKSTL~~lL~g~~~p-------------~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~ 329 (479)
++|+||||||||||++.|++.+++ ..|+ ++|++..-++..++++. +.|..++..++...|.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~~---~~~~~f~e~~~~~~~~- 75 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFERL---IENGEFLEWAEFHGNY- 75 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHHH---HHcCCeEEEEEEcCEE-
Confidence 789999999999999999999764 3444 48888877788887764 5678888888888885
Q ss_pred CCCCCCHHHHHHHH
Q 011713 330 PLGMYSDNEIWEAM 343 (479)
Q Consensus 330 ~~~~~~~~~i~~a~ 343 (479)
++ .+.+.+.++.
T Consensus 76 yg--~~~~~i~~~~ 87 (137)
T cd00071 76 YG--TSKAAVEEAL 87 (137)
T ss_pred ec--CcHHHHHHHH
Confidence 22 3445555544
No 494
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.33 E-value=3e-07 Score=85.93 Aligned_cols=29 Identities=31% Similarity=0.597 Sum_probs=26.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLVEP 286 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~~p 286 (479)
++|+.++|+|+||||||||++.|.+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999764
No 495
>PTZ00035 Rad51 protein; Provisional
Probab=98.32 E-value=3.5e-06 Score=84.42 Aligned_cols=81 Identities=20% Similarity=0.261 Sum_probs=58.3
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhccCC-C-----CCceE-EECCeecCCCCHHHHhccceEEcCCCccccccHHhhc
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVE-P-----ENGRI-LIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL 328 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~-p-----~~G~I-~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi 328 (479)
=|++|+.+.|+|++|||||||+..++.... | .+|.+ +||+... ++++.+ ..+.|.+-++..++.+||
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~--f~~eri----~~ia~~~g~~~~~~l~nI 187 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT--FRPERI----VQIAERFGLDPEDVLDNI 187 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC--CCHHHH----HHHHHHhCCChHhHhhce
Confidence 478999999999999999999999886655 4 46666 8888543 455543 334666667777899999
Q ss_pred CCCCCCCHHHHHHH
Q 011713 329 DPLGMYSDNEIWEA 342 (479)
Q Consensus 329 ~~~~~~~~~~i~~a 342 (479)
.+....+.++..+.
T Consensus 188 ~~~~~~~~e~~~~~ 201 (337)
T PTZ00035 188 AYARAYNHEHQMQL 201 (337)
T ss_pred EEEccCCHHHHHHH
Confidence 76555555554443
No 496
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.29 E-value=1.5e-06 Score=79.87 Aligned_cols=70 Identities=11% Similarity=0.070 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEccCchh---hhcCCEEEEEeCCE
Q 011713 373 GQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPT---ITDSDMVMVLSYGE 444 (479)
Q Consensus 373 GQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaHrl~~---i~~~D~I~vl~~G~ 444 (479)
|+-+|-+||.++..||+.+..+| +-+||...+.+.+.+.+... +.++++-+|.+.. -..||.+++++.+.
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~ 134 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSP 134 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECCH
Confidence 77899999999999999988887 77999999999888877643 4699999999853 45699999988764
No 497
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.28 E-value=6.6e-07 Score=82.98 Aligned_cols=56 Identities=25% Similarity=0.356 Sum_probs=42.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCceEEECCeecCCCCHHHHhccceEEcCCC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~ 317 (479)
++|+.++|+|+||||||||++.|.+.+.+ ..|.+.+||.++.. .+...++|.+|+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~----~~~~~~~~~~~~~ 78 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH----GLCSDLGFSDADR 78 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh----hhhhcCCcCcccH
Confidence 56899999999999999999999997654 35689999977652 2223455555553
No 498
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.25 E-value=1.2e-06 Score=89.75 Aligned_cols=67 Identities=19% Similarity=0.310 Sum_probs=57.4
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCC
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 300 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~ 300 (479)
.++.++++..|... ..+++++ +++.+||+++|+|+||+|||||++.|+|...|+.|.+.+.|..-++
T Consensus 129 ~~~r~~v~~~l~tG-i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRgrE 195 (433)
T PRK07594 129 AMVRQPITQPLMTG-IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE 195 (433)
T ss_pred ceeccCHhheeCCC-ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCchH
Confidence 47788888777544 3499999 9999999999999999999999999999999999988887754433
No 499
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.25 E-value=1.1e-06 Score=89.83 Aligned_cols=52 Identities=27% Similarity=0.418 Sum_probs=48.1
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCC
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 300 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~ 300 (479)
.+++++ +++.+|++++|+|++|+|||||+++|++..+|+.|.|...|..-++
T Consensus 126 ~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~e 177 (413)
T TIGR03497 126 KAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGRE 177 (413)
T ss_pred eeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHH
Confidence 489999 9999999999999999999999999999999999999988876554
No 500
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.25 E-value=3.1e-06 Score=81.82 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLVEP 286 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~~p 286 (479)
+|++++++|++|+||||++..|++.+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~ 101 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHG 101 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 6799999999999999999999988743
Done!