Query 011713
Match_columns 479
No_of_seqs 386 out of 2769
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 13:49:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 2.2E-97 8E-102 857.2 43.0 468 1-471 842-1319(1321)
2 4f4c_A Multidrug resistance pr 100.0 1E-95 4E-100 843.3 56.4 468 1-470 184-655 (1321)
3 3qf4_A ABC transporter, ATP-bi 100.0 3.8E-90 1.3E-94 739.5 54.9 467 2-471 112-581 (587)
4 3qf4_B Uncharacterized ABC tra 100.0 3.4E-90 1.2E-94 741.8 47.1 469 1-474 125-596 (598)
5 4a82_A Cystic fibrosis transme 100.0 1.1E-89 3.8E-94 735.5 49.4 464 2-468 110-576 (578)
6 3b5x_A Lipid A export ATP-bind 100.0 5.2E-88 1.8E-92 723.6 58.9 463 2-469 114-580 (582)
7 3b60_A Lipid A export ATP-bind 100.0 4.6E-88 1.6E-92 724.0 57.8 463 1-468 113-579 (582)
8 2yl4_A ATP-binding cassette SU 100.0 3.5E-87 1.2E-91 718.9 56.4 468 2-472 111-587 (595)
9 3g5u_A MCG1178, multidrug resi 100.0 3.9E-86 1.3E-90 761.8 45.8 467 1-469 156-626 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 8E-82 2.7E-86 726.0 45.6 470 1-472 797-1274(1284)
11 3nh6_A ATP-binding cassette SU 100.0 6E-75 2.1E-79 569.9 25.2 279 190-472 14-293 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 1.5E-62 5.1E-67 470.1 31.4 239 230-468 5-245 (247)
13 2ghi_A Transport protein; mult 100.0 6.1E-61 2.1E-65 462.4 29.2 238 231-469 16-255 (260)
14 1mv5_A LMRA, multidrug resista 100.0 1.6E-61 5.4E-66 462.5 20.1 235 233-468 2-238 (243)
15 2ixe_A Antigen peptide transpo 100.0 2E-60 6.7E-65 461.3 27.1 241 231-471 15-260 (271)
16 3gd7_A Fusion complex of cysti 100.0 3.5E-59 1.2E-63 471.9 26.5 231 227-458 14-244 (390)
17 2cbz_A Multidrug resistance-as 100.0 5.8E-58 2E-62 435.8 24.2 226 232-470 3-231 (237)
18 2pze_A Cystic fibrosis transme 100.0 1.6E-57 5.4E-62 430.8 25.6 222 231-465 5-227 (229)
19 3gfo_A Cobalt import ATP-bindi 100.0 3.7E-55 1.3E-59 424.1 19.4 219 232-462 7-239 (275)
20 3tif_A Uncharacterized ABC tra 100.0 1.2E-54 4.1E-59 412.5 19.8 213 233-455 2-233 (235)
21 3tui_C Methionine import ATP-b 100.0 1.7E-54 5.7E-59 431.9 21.3 216 231-457 23-254 (366)
22 1ji0_A ABC transporter; ATP bi 100.0 2E-53 7E-58 405.4 24.3 218 232-457 6-229 (240)
23 2bbs_A Cystic fibrosis transme 100.0 8.4E-54 2.9E-58 417.7 21.6 216 231-464 39-255 (290)
24 4g1u_C Hemin import ATP-bindin 100.0 3.2E-53 1.1E-57 409.5 21.8 213 232-457 11-238 (266)
25 2olj_A Amino acid ABC transpor 100.0 4.9E-53 1.7E-57 407.0 22.3 214 232-458 24-250 (263)
26 1vpl_A ABC transporter, ATP-bi 100.0 1.7E-52 5.7E-57 401.9 24.1 212 231-456 14-235 (256)
27 2yz2_A Putative ABC transporte 100.0 1.6E-52 5.5E-57 405.1 23.0 211 233-457 3-228 (266)
28 2pcj_A ABC transporter, lipopr 100.0 7.2E-53 2.5E-57 397.5 19.3 207 232-451 4-223 (224)
29 1b0u_A Histidine permease; ABC 100.0 3.6E-52 1.2E-56 401.6 24.2 214 232-458 6-244 (262)
30 3fvq_A Fe(3+) IONS import ATP- 100.0 3.5E-52 1.2E-56 415.1 23.3 214 232-458 4-230 (359)
31 1g6h_A High-affinity branched- 100.0 2.4E-52 8.1E-57 402.1 21.4 210 232-454 7-240 (257)
32 3rlf_A Maltose/maltodextrin im 100.0 3.9E-52 1.3E-56 417.4 21.3 211 232-457 3-224 (381)
33 2onk_A Molybdate/tungstate ABC 100.0 4.3E-52 1.5E-56 395.5 19.4 208 233-458 2-218 (240)
34 2qi9_C Vitamin B12 import ATP- 100.0 6.2E-52 2.1E-56 396.4 20.4 206 233-456 5-222 (249)
35 2ihy_A ABC transporter, ATP-bi 100.0 3.4E-52 1.1E-56 404.8 18.8 213 232-457 21-253 (279)
36 2yyz_A Sugar ABC transporter, 100.0 1.7E-51 5.9E-56 411.4 22.6 211 233-458 4-225 (359)
37 1z47_A CYSA, putative ABC-tran 100.0 1.1E-51 3.9E-56 411.6 19.9 214 231-458 13-237 (355)
38 3d31_A Sulfate/molybdate ABC t 100.0 2.2E-51 7.4E-56 409.4 21.0 210 233-458 2-219 (348)
39 2d2e_A SUFC protein; ABC-ATPas 100.0 4.3E-51 1.5E-55 391.8 22.1 208 233-453 4-230 (250)
40 1v43_A Sugar-binding transport 100.0 4.4E-51 1.5E-55 410.3 22.6 212 232-458 11-233 (372)
41 2it1_A 362AA long hypothetical 100.0 1.5E-51 5E-56 412.3 18.9 212 232-458 3-225 (362)
42 1oxx_K GLCV, glucose, ABC tran 100.0 1.5E-51 5.1E-56 412.0 18.5 213 233-458 4-232 (353)
43 1g29_1 MALK, maltose transport 100.0 9.1E-51 3.1E-55 408.8 19.1 212 232-458 3-231 (372)
44 2zu0_C Probable ATP-dependent 100.0 2.5E-50 8.4E-55 389.9 19.9 211 232-455 20-253 (267)
45 2pjz_A Hypothetical protein ST 100.0 1.7E-50 5.9E-55 389.2 18.3 206 233-456 2-215 (263)
46 2nq2_C Hypothetical ABC transp 100.0 3.8E-50 1.3E-54 385.3 18.3 200 232-457 4-218 (253)
47 1sgw_A Putative ABC transporte 100.0 2.1E-49 7.3E-54 370.0 12.8 195 232-446 10-211 (214)
48 2v9p_A Replication protein E1; 100.0 1.2E-46 4.2E-51 367.9 -19.3 229 169-468 44-275 (305)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 6.6E-40 2.2E-44 346.3 13.5 198 232-456 287-493 (538)
50 3bk7_A ABC transporter ATP-bin 100.0 1.2E-39 4E-44 347.9 14.3 198 232-456 357-563 (607)
51 2iw3_A Elongation factor 3A; a 100.0 2.7E-39 9.4E-44 356.2 15.9 197 232-450 671-981 (986)
52 3ozx_A RNAse L inhibitor; ATP 100.0 4.6E-39 1.6E-43 339.0 15.6 198 232-455 269-476 (538)
53 3bk7_A ABC transporter ATP-bin 100.0 1.6E-38 5.5E-43 339.1 10.6 193 236-443 95-304 (607)
54 3j16_B RLI1P; ribosome recycli 100.0 8.4E-38 2.9E-42 332.9 13.8 197 236-457 350-560 (608)
55 1yqt_A RNAse L inhibitor; ATP- 100.0 2.3E-38 7.8E-43 334.5 9.0 196 233-443 21-234 (538)
56 3ux8_A Excinuclease ABC, A sub 100.0 7.5E-38 2.6E-42 340.4 12.7 213 238-461 326-645 (670)
57 2iw3_A Elongation factor 3A; a 100.0 4.1E-36 1.4E-40 330.9 24.2 197 231-457 434-636 (986)
58 3ux8_A Excinuclease ABC, A sub 100.0 6.3E-37 2.2E-41 333.2 15.8 204 247-459 31-301 (670)
59 3pih_A Uvrabc system protein A 100.0 2.6E-36 8.9E-41 332.4 17.6 207 248-464 598-910 (916)
60 3j16_B RLI1P; ribosome recycli 100.0 5.2E-36 1.8E-40 319.2 11.6 196 237-445 82-299 (608)
61 3ozx_A RNAse L inhibitor; ATP 100.0 3E-36 1E-40 317.6 7.3 192 237-444 4-214 (538)
62 4aby_A DNA repair protein RECN 100.0 2.5E-34 8.6E-39 295.9 13.4 200 249-449 50-381 (415)
63 2vf7_A UVRA2, excinuclease ABC 100.0 4.1E-34 1.4E-38 312.5 14.6 218 231-461 501-832 (842)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 1E-37 3.4E-42 322.6 -14.8 190 232-456 118-338 (460)
65 2r6f_A Excinuclease ABC subuni 100.0 2.9E-33 9.9E-38 306.0 17.8 215 232-463 629-949 (972)
66 2ygr_A Uvrabc system protein A 100.0 8.8E-33 3E-37 303.2 15.7 217 231-464 646-968 (993)
67 1e69_A Chromosome segregation 100.0 8.2E-31 2.8E-35 260.5 15.5 201 252-453 17-310 (322)
68 3b85_A Phosphate starvation-in 100.0 3.2E-32 1.1E-36 253.0 -4.4 159 248-446 14-173 (208)
69 1z6g_A Guanylate kinase; struc 100.0 7.8E-32 2.7E-36 253.0 -10.4 165 249-442 12-193 (218)
70 2pt7_A CAG-ALFA; ATPase, prote 99.9 2.2E-30 7.5E-35 257.6 -5.2 141 235-445 151-292 (330)
71 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 3.5E-27 1.2E-31 237.9 16.9 82 366-447 276-364 (365)
72 4gp7_A Metallophosphoesterase; 99.9 3.7E-29 1.3E-33 225.7 0.9 150 252-438 1-169 (171)
73 1ye8_A Protein THEP1, hypothet 99.9 5.3E-29 1.8E-33 225.9 0.3 147 262-447 2-159 (178)
74 2dpy_A FLII, flagellum-specifi 99.9 9.7E-30 3.3E-34 261.5 -11.2 194 231-456 130-344 (438)
75 1tq4_A IIGP1, interferon-induc 99.9 2.8E-28 9.4E-33 247.8 -5.5 167 248-438 37-248 (413)
76 2f1r_A Molybdopterin-guanine d 99.9 1.2E-27 4.2E-32 215.0 -6.5 111 261-391 3-125 (171)
77 3sop_A Neuronal-specific septi 99.9 1.1E-26 3.8E-31 224.4 -2.1 150 262-432 4-154 (270)
78 3aez_A Pantothenate kinase; tr 99.9 8.6E-28 3E-32 236.8 -11.2 174 230-444 41-246 (312)
79 2eyu_A Twitching motility prot 99.9 4.9E-28 1.7E-32 232.8 -15.5 184 233-430 6-242 (261)
80 3b9q_A Chloroplast SRP recepto 99.9 2E-26 6.9E-31 226.0 -4.8 173 251-446 91-285 (302)
81 2ewv_A Twitching motility prot 99.9 1.4E-27 4.9E-32 241.1 -14.2 175 248-430 126-353 (372)
82 2o5v_A DNA replication and rep 99.9 1.7E-23 5.9E-28 209.3 14.3 83 369-456 265-356 (359)
83 1znw_A Guanylate kinase, GMP k 99.9 3.7E-26 1.3E-30 212.5 -6.9 169 245-441 7-202 (207)
84 2i3b_A HCR-ntpase, human cance 99.9 1.7E-25 5.7E-30 204.6 -4.3 172 260-466 1-182 (189)
85 2og2_A Putative signal recogni 99.9 2.5E-25 8.4E-30 222.3 -3.8 173 251-446 148-342 (359)
86 2obl_A ESCN; ATPase, hydrolase 99.9 1.1E-24 3.8E-29 217.4 -0.5 195 231-455 44-254 (347)
87 1lvg_A Guanylate kinase, GMP k 99.9 1.1E-26 3.9E-31 214.4 -14.0 159 257-442 1-173 (198)
88 1tf7_A KAIC; homohexamer, hexa 99.9 2.3E-24 7.9E-29 227.8 -3.7 172 241-443 20-210 (525)
89 3pih_A Uvrabc system protein A 99.9 9.9E-22 3.4E-26 216.6 12.2 167 278-458 386-562 (916)
90 4ad8_A DNA repair protein RECN 99.8 2.2E-21 7.7E-26 204.6 12.1 76 369-444 396-474 (517)
91 1cr0_A DNA primase/helicase; R 99.8 4.3E-22 1.5E-26 195.2 5.8 181 248-445 23-237 (296)
92 3qkt_A DNA double-strand break 99.8 1.7E-20 5.9E-25 187.4 17.4 74 368-441 247-327 (339)
93 1lw7_A Transcriptional regulat 99.8 1.5E-23 5.2E-28 211.7 -4.8 147 249-397 157-329 (365)
94 2vf7_A UVRA2, excinuclease ABC 99.8 1.8E-21 6.2E-26 212.9 9.9 180 268-457 270-476 (842)
95 2o8b_B DNA mismatch repair pro 99.8 2.1E-21 7.2E-26 217.5 8.4 170 231-451 749-937 (1022)
96 3asz_A Uridine kinase; cytidin 99.8 8.9E-24 3E-28 196.7 -10.6 143 257-428 3-161 (211)
97 1pzn_A RAD51, DNA repair and r 99.8 4.7E-22 1.6E-26 199.1 1.0 166 249-455 119-314 (349)
98 1tf7_A KAIC; homohexamer, hexa 99.8 1.5E-21 5.2E-26 206.2 3.6 153 254-444 275-444 (525)
99 2jeo_A Uridine-cytidine kinase 99.8 1.8E-22 6E-27 192.6 -3.5 166 246-456 11-187 (245)
100 1w1w_A Structural maintenance 99.8 1.7E-20 5.9E-25 193.5 9.9 74 369-442 333-411 (430)
101 2r6f_A Excinuclease ABC subuni 99.8 1.8E-20 6.2E-25 205.3 10.1 94 364-457 499-601 (972)
102 1pui_A ENGB, probable GTP-bind 99.8 1.1E-21 3.8E-26 181.8 0.2 169 233-416 4-197 (210)
103 2gza_A Type IV secretion syste 99.8 7.6E-23 2.6E-27 205.9 -8.4 148 234-383 137-301 (361)
104 2ehv_A Hypothetical protein PH 99.8 5.5E-22 1.9E-26 189.0 -2.2 181 233-442 7-207 (251)
105 1ewq_A DNA mismatch repair pro 99.8 1E-20 3.4E-25 206.1 6.0 145 231-434 549-704 (765)
106 3szr_A Interferon-induced GTP- 99.8 3.3E-22 1.1E-26 214.2 -5.6 190 232-455 10-236 (608)
107 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 8.7E-20 3E-24 159.6 10.5 88 358-445 41-142 (148)
108 4a74_A DNA repair and recombin 99.8 2.1E-20 7.3E-25 175.7 7.0 148 256-444 21-201 (231)
109 3jvv_A Twitching mobility prot 99.8 7.7E-21 2.6E-25 190.2 4.0 147 236-443 92-246 (356)
110 3thx_A DNA mismatch repair pro 99.8 8.1E-20 2.8E-24 202.3 9.9 166 231-454 630-811 (934)
111 2qag_C Septin-7; cell cycle, c 99.8 1.4E-20 4.9E-25 191.7 0.3 166 231-431 10-180 (418)
112 2ygr_A Uvrabc system protein A 99.8 4.9E-19 1.7E-23 194.7 12.1 95 363-457 515-618 (993)
113 1rj9_A FTSY, signal recognitio 99.8 1E-19 3.5E-24 178.4 4.1 163 259-444 101-284 (304)
114 3kta_B Chromosome segregation 99.8 1.8E-18 6.2E-23 155.1 11.1 78 368-445 63-146 (173)
115 2qnr_A Septin-2, protein NEDD5 99.8 2.7E-20 9.2E-25 182.7 -1.2 162 236-430 2-169 (301)
116 1odf_A YGR205W, hypothetical 3 99.8 3.8E-21 1.3E-25 187.3 -8.6 128 259-404 30-169 (290)
117 1s96_A Guanylate kinase, GMP k 99.7 3.7E-19 1.3E-23 166.3 2.2 141 254-456 10-160 (219)
118 2w0m_A SSO2452; RECA, SSPF, un 99.7 1.3E-18 4.6E-23 163.4 4.8 165 248-444 10-193 (235)
119 3c8u_A Fructokinase; YP_612366 99.7 2.1E-21 7.3E-26 180.4 -15.3 119 257-397 19-140 (208)
120 3thx_B DNA mismatch repair pro 99.7 3.7E-18 1.2E-22 188.6 5.7 158 232-437 640-805 (918)
121 2qag_B Septin-6, protein NEDD5 99.7 2.8E-18 9.7E-23 174.0 4.0 179 232-426 16-217 (427)
122 2cvh_A DNA repair and recombin 99.7 1.7E-17 5.7E-22 154.7 6.9 151 248-443 7-185 (220)
123 1nij_A Hypothetical protein YJ 99.7 8.4E-19 2.9E-23 173.5 -2.6 143 261-429 5-190 (318)
124 1nlf_A Regulatory protein REPA 99.7 8.3E-17 2.8E-21 156.2 9.5 151 256-431 26-184 (279)
125 1wb9_A DNA mismatch repair pro 99.7 1.3E-17 4.5E-22 182.6 3.9 164 232-448 577-750 (800)
126 1zp6_A Hypothetical protein AT 99.7 1.1E-18 3.8E-23 159.3 -4.1 161 256-437 5-169 (191)
127 1n0w_A DNA repair protein RAD5 99.6 2E-16 6.7E-21 149.7 8.9 148 256-443 20-209 (243)
128 2qm8_A GTPase/ATPase; G protei 99.6 1.4E-18 4.8E-23 173.1 -10.6 177 233-415 30-258 (337)
129 1sxj_E Activator 1 40 kDa subu 99.6 2.6E-15 8.7E-20 150.4 7.3 140 261-431 37-177 (354)
130 2yhs_A FTSY, cell division pro 99.5 4E-15 1.4E-19 152.8 7.8 150 250-426 283-447 (503)
131 2bdt_A BH3686; alpha-beta prot 99.5 1.1E-17 3.9E-22 152.5 -10.5 165 260-455 2-183 (189)
132 3auy_A DNA double-strand break 99.5 8.6E-15 3E-19 147.8 9.1 74 368-441 279-359 (371)
133 2bbw_A Adenylate kinase 4, AK4 99.5 2.1E-16 7.2E-21 150.4 -3.8 146 259-416 26-197 (246)
134 2oap_1 GSPE-2, type II secreti 99.5 2.3E-17 7.8E-22 172.6 -12.1 172 248-435 248-458 (511)
135 3e70_C DPA, signal recognition 99.5 1.1E-14 3.6E-19 144.0 7.6 163 256-446 125-307 (328)
136 1p9r_A General secretion pathw 99.5 1.2E-17 4.1E-22 170.3 -14.6 127 249-392 158-314 (418)
137 1htw_A HI0065; nucleotide-bind 99.5 5.1E-16 1.7E-20 137.3 -2.3 86 236-329 11-96 (158)
138 3lda_A DNA repair protein RAD5 99.5 1.7E-14 5.7E-19 146.3 8.0 147 256-444 174-364 (400)
139 2rcn_A Probable GTPase ENGC; Y 99.5 2.1E-15 7.3E-20 150.0 1.1 122 249-385 205-329 (358)
140 2kjq_A DNAA-related protein; s 99.5 3.5E-14 1.2E-18 124.4 5.7 91 249-427 30-124 (149)
141 3ec2_A DNA replication protein 99.4 6.8E-14 2.3E-18 126.3 5.5 110 254-429 32-144 (180)
142 2yv5_A YJEQ protein; hydrolase 99.4 2.3E-14 7.7E-19 140.5 0.4 113 256-382 161-300 (302)
143 1sq5_A Pantothenate kinase; P- 99.4 1.7E-15 5.8E-20 149.1 -7.9 136 231-402 36-199 (308)
144 2x8a_A Nuclear valosin-contain 99.4 7E-16 2.4E-20 149.2 -11.1 142 248-412 34-190 (274)
145 1cke_A CK, MSSA, protein (cyti 99.4 3.8E-15 1.3E-19 139.5 -6.1 129 259-398 4-151 (227)
146 3lnc_A Guanylate kinase, GMP k 99.4 5.5E-16 1.9E-20 146.1 -12.6 144 249-415 16-176 (231)
147 1udx_A The GTP-binding protein 99.3 2.2E-13 7.4E-18 138.7 2.6 152 250-426 147-306 (416)
148 1u0l_A Probable GTPase ENGC; p 99.3 3.5E-13 1.2E-17 132.0 4.0 102 255-357 164-290 (301)
149 3tr0_A Guanylate kinase, GMP k 99.3 4.1E-12 1.4E-16 116.7 9.1 152 254-414 1-186 (205)
150 1ls1_A Signal recognition part 99.3 1.2E-12 4.2E-17 127.6 5.3 142 233-425 77-219 (295)
151 4e22_A Cytidylate kinase; P-lo 99.3 2.4E-13 8.3E-18 129.7 -0.1 108 249-365 19-144 (252)
152 1vma_A Cell division protein F 99.2 8E-12 2.7E-16 122.2 7.5 98 253-398 97-197 (306)
153 3euj_A Chromosome partition pr 99.2 3.1E-12 1.1E-16 131.8 4.3 65 234-303 8-72 (483)
154 2px0_A Flagellar biosynthesis 99.2 1.9E-11 6.6E-16 119.1 7.7 138 258-447 103-246 (296)
155 3a00_A Guanylate kinase, GMP k 99.2 9.4E-12 3.2E-16 112.9 3.8 127 260-395 1-169 (186)
156 1t9h_A YLOQ, probable GTPase E 99.2 2.7E-12 9.2E-17 125.3 -0.4 94 255-350 168-287 (307)
157 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 4.6E-14 1.6E-18 142.3 -14.0 169 256-451 16-208 (392)
158 1oix_A RAS-related protein RAB 99.1 1.6E-11 5.4E-16 111.8 1.4 141 262-414 31-188 (191)
159 1iy2_A ATP-dependent metallopr 99.1 2.1E-13 7.2E-18 132.0 -12.2 136 234-397 51-195 (278)
160 2dy1_A Elongation factor G; tr 99.1 1.1E-10 3.8E-15 126.1 7.0 132 254-430 3-138 (665)
161 1in4_A RUVB, holliday junction 99.1 1.1E-13 3.7E-18 137.7 -15.7 150 235-415 21-192 (334)
162 2dr3_A UPF0273 protein PH0284; 99.1 1.6E-10 5.5E-15 109.0 6.6 166 249-442 11-196 (247)
163 1qhl_A Protein (cell division 99.0 4.6E-12 1.6E-16 118.4 -4.5 75 232-316 9-91 (227)
164 2zr9_A Protein RECA, recombina 99.0 5.2E-10 1.8E-14 111.5 9.7 143 256-450 57-237 (349)
165 3ney_A 55 kDa erythrocyte memb 99.0 6.5E-11 2.2E-15 107.9 2.4 83 255-345 14-109 (197)
166 1ixz_A ATP-dependent metallopr 99.0 3.8E-13 1.3E-17 128.3 -13.1 138 233-398 26-172 (254)
167 3k1j_A LON protease, ATP-depen 99.0 1.8E-11 6.3E-16 131.2 -1.9 156 247-414 47-227 (604)
168 2ius_A DNA translocase FTSK; n 99.0 1.2E-11 4.1E-16 128.4 -4.0 161 252-429 159-343 (512)
169 2r6a_A DNAB helicase, replicat 99.0 5.3E-10 1.8E-14 115.7 7.7 176 249-445 192-401 (454)
170 1kgd_A CASK, peripheral plasma 99.0 8.5E-11 2.9E-15 106.0 0.7 81 258-344 3-94 (180)
171 1svm_A Large T antigen; AAA+ f 98.9 8.6E-12 2.9E-16 125.3 -7.5 136 248-398 157-312 (377)
172 2qt1_A Nicotinamide riboside k 98.9 4.2E-10 1.5E-14 103.6 2.9 105 253-397 14-119 (207)
173 2f9l_A RAB11B, member RAS onco 98.9 8.7E-10 3E-14 100.7 4.5 136 262-414 7-164 (199)
174 3nwj_A ATSK2; P loop, shikimat 98.8 6E-10 2E-14 105.7 -0.9 52 232-284 17-72 (250)
175 2ce7_A Cell division protein F 98.8 1.5E-08 5E-13 104.8 9.3 123 248-440 39-183 (476)
176 2j41_A Guanylate kinase; GMP, 98.7 2.1E-09 7.2E-14 98.5 1.5 63 255-320 1-63 (207)
177 3uie_A Adenylyl-sulfate kinase 98.7 5.6E-10 1.9E-14 102.3 -3.3 50 249-299 14-65 (200)
178 2qtf_A Protein HFLX, GTP-bindi 98.7 6.3E-09 2.2E-13 104.2 3.8 142 262-415 181-351 (364)
179 3cr8_A Sulfate adenylyltranfer 98.7 3.3E-09 1.1E-13 111.6 1.6 87 256-347 365-468 (552)
180 3kta_A Chromosome segregation 98.7 1.4E-09 4.6E-14 97.9 -1.3 98 251-349 18-136 (182)
181 4eun_A Thermoresistant glucoki 98.7 3.2E-09 1.1E-13 97.2 0.7 61 254-320 23-84 (200)
182 2dhr_A FTSH; AAA+ protein, hex 98.6 8.6E-10 3E-14 114.6 -4.9 138 234-399 42-188 (499)
183 1zu4_A FTSY; GTPase, signal re 98.6 7.4E-09 2.5E-13 101.8 1.8 68 249-316 94-171 (320)
184 3tau_A Guanylate kinase, GMP k 98.6 8.1E-09 2.8E-13 95.2 1.6 68 258-328 6-84 (208)
185 3t34_A Dynamin-related protein 98.6 5E-08 1.7E-12 97.7 7.0 46 248-296 25-72 (360)
186 3hr8_A Protein RECA; alpha and 98.5 4.6E-07 1.6E-11 90.0 11.8 60 256-318 57-117 (356)
187 2vp4_A Deoxynucleoside kinase; 98.5 5E-09 1.7E-13 98.2 -2.9 65 253-321 13-87 (230)
188 1jjv_A Dephospho-COA kinase; P 98.5 4.1E-08 1.4E-12 90.0 2.5 126 262-442 4-132 (206)
189 3ice_A Transcription terminati 98.5 1.7E-08 5.8E-13 100.1 -0.2 54 230-284 131-198 (422)
190 2z43_A DNA repair and recombin 98.5 1.4E-07 4.6E-12 93.1 6.2 29 256-284 103-131 (324)
191 3vaa_A Shikimate kinase, SK; s 98.4 7E-08 2.4E-12 88.1 3.4 39 246-284 11-49 (199)
192 2ffh_A Protein (FFH); SRP54, s 98.4 2.3E-07 7.8E-12 94.3 6.6 160 235-426 79-246 (425)
193 2e87_A Hypothetical protein PH 98.4 3.2E-07 1.1E-11 91.7 6.9 61 368-429 230-293 (357)
194 4a1f_A DNAB helicase, replicat 98.4 7.3E-07 2.5E-11 87.9 8.7 103 249-401 35-141 (338)
195 2xau_A PRE-mRNA-splicing facto 98.4 4E-07 1.4E-11 100.0 7.5 64 369-432 190-256 (773)
196 3kl4_A SRP54, signal recogniti 98.3 6.5E-07 2.2E-11 91.2 7.7 41 259-299 96-136 (433)
197 2eyu_A Twitching motility prot 98.3 1.6E-07 5.5E-12 89.6 1.9 59 377-441 88-146 (261)
198 3m6a_A ATP-dependent protease 98.3 1.7E-07 5.8E-12 98.9 1.5 58 235-295 86-143 (543)
199 1rz3_A Hypothetical protein rb 98.3 2.4E-07 8.3E-12 84.7 2.2 48 256-303 18-65 (201)
200 1knq_A Gluconate kinase; ALFA/ 98.2 3.1E-07 1E-11 81.7 2.4 53 258-316 6-59 (175)
201 1v5w_A DMC1, meiotic recombina 98.2 8.7E-07 3E-11 88.0 4.1 28 256-283 118-145 (343)
202 1uf9_A TT1252 protein; P-loop, 98.2 1.3E-07 4.6E-12 86.0 -1.9 33 260-297 8-40 (203)
203 3tqc_A Pantothenate kinase; bi 98.1 4E-07 1.4E-11 89.2 0.9 45 249-293 75-127 (321)
204 1fnn_A CDC6P, cell division co 98.1 3.7E-06 1.3E-10 84.3 7.6 44 386-430 124-171 (389)
205 3r20_A Cytidylate kinase; stru 98.1 8.4E-07 2.9E-11 82.9 2.5 70 260-329 9-96 (233)
206 1sxj_C Activator 1 40 kDa subu 98.1 6.3E-07 2.2E-11 88.8 1.0 43 248-290 32-76 (340)
207 3b9p_A CG5977-PA, isoform A; A 98.0 8E-06 2.7E-10 79.0 8.2 71 371-441 97-187 (297)
208 2pez_A Bifunctional 3'-phospho 98.0 5.4E-07 1.9E-11 80.5 -0.4 41 258-299 3-45 (179)
209 2z4s_A Chromosomal replication 98.0 7.5E-06 2.6E-10 84.0 7.6 65 387-451 194-263 (440)
210 1ypw_A Transitional endoplasmi 98.0 1.7E-06 5.7E-11 95.5 2.2 32 255-286 233-264 (806)
211 1f6b_A SAR1; gtpases, N-termin 98.0 1.7E-06 5.9E-11 78.5 1.8 58 239-298 6-71 (198)
212 3lxx_A GTPase IMAP family memb 98.0 4.1E-05 1.4E-09 71.6 11.0 28 262-289 31-58 (239)
213 2qor_A Guanylate kinase; phosp 97.9 1.3E-06 4.4E-11 79.9 -0.1 69 256-327 8-87 (204)
214 1ega_A Protein (GTP-binding pr 97.9 4.6E-06 1.6E-10 81.2 3.5 144 259-432 7-163 (301)
215 2qby_A CDC6 homolog 1, cell di 97.9 3.7E-06 1.3E-10 84.0 2.8 31 258-288 43-73 (386)
216 1lv7_A FTSH; alpha/beta domain 97.9 5.2E-05 1.8E-09 71.6 10.5 43 249-295 36-78 (257)
217 1mky_A Probable GTP-binding pr 97.9 5.4E-06 1.9E-10 85.1 3.8 61 261-321 181-253 (439)
218 3bh0_A DNAB-like replicative h 97.9 1.8E-05 6.1E-10 77.5 7.3 34 249-282 57-90 (315)
219 4eaq_A DTMP kinase, thymidylat 97.9 4.5E-06 1.6E-10 77.9 2.7 44 250-294 13-59 (229)
220 2p67_A LAO/AO transport system 97.9 2E-06 6.9E-11 85.3 0.1 52 248-299 44-95 (341)
221 3llm_A ATP-dependent RNA helic 97.8 1.1E-05 3.7E-10 75.5 4.8 130 257-423 73-213 (235)
222 1u94_A RECA protein, recombina 97.8 8.5E-05 2.9E-09 73.8 11.3 46 249-295 50-99 (356)
223 1kag_A SKI, shikimate kinase I 97.8 6.9E-06 2.3E-10 72.6 3.0 33 259-295 3-35 (173)
224 1m7g_A Adenylylsulfate kinase; 97.8 2.6E-06 8.9E-11 78.3 0.1 43 255-297 20-64 (211)
225 4fcw_A Chaperone protein CLPB; 97.8 3.3E-05 1.1E-09 75.0 7.3 32 260-291 47-78 (311)
226 2q6t_A DNAB replication FORK h 97.8 0.00011 3.6E-09 75.6 11.2 172 249-441 189-396 (444)
227 2www_A Methylmalonic aciduria 97.8 7.2E-06 2.5E-10 81.5 2.0 43 258-300 72-114 (349)
228 1l8q_A Chromosomal replication 97.8 2.3E-05 7.9E-10 76.8 5.7 29 259-287 36-64 (324)
229 1m2o_B GTP-binding protein SAR 97.7 1.9E-05 6.5E-10 71.0 4.3 48 249-297 13-68 (190)
230 2w58_A DNAI, primosome compone 97.7 2.5E-05 8.6E-10 70.9 5.0 27 261-287 55-81 (202)
231 3h4m_A Proteasome-activating n 97.7 0.00013 4.4E-09 69.9 9.7 28 257-284 48-75 (285)
232 2gj8_A MNME, tRNA modification 97.7 2.7E-05 9.2E-10 68.8 4.4 27 258-284 2-28 (172)
233 1sxj_D Activator 1 41 kDa subu 97.7 8.4E-06 2.9E-10 80.6 0.9 43 387-430 133-175 (353)
234 3cf0_A Transitional endoplasmi 97.6 0.00017 5.7E-09 70.0 9.2 31 255-285 44-74 (301)
235 4dcu_A GTP-binding protein ENG 97.6 9.7E-05 3.3E-09 76.1 7.3 57 372-431 87-144 (456)
236 3bos_A Putative DNA replicatio 97.6 2.3E-05 7.8E-10 72.7 2.2 28 259-286 51-78 (242)
237 2jaq_A Deoxyguanosine kinase; 97.5 4.8E-06 1.6E-10 75.6 -2.6 68 262-329 2-85 (205)
238 1j8m_F SRP54, signal recogniti 97.5 1.5E-05 5.1E-10 77.3 0.7 47 253-300 92-138 (297)
239 3n70_A Transport activator; si 97.5 0.00029 1E-08 60.3 8.8 29 258-286 22-50 (145)
240 1njg_A DNA polymerase III subu 97.5 3.7E-05 1.3E-09 70.9 3.2 45 386-431 125-169 (250)
241 1y63_A LMAJ004144AAA protein; 97.5 4.5E-05 1.5E-09 68.3 3.2 32 252-283 2-33 (184)
242 2i1q_A DNA repair and recombin 97.4 9.2E-05 3.1E-09 72.5 4.9 27 256-282 94-120 (322)
243 2yvu_A Probable adenylyl-sulfa 97.4 5.1E-05 1.7E-09 67.9 2.0 40 256-295 9-49 (186)
244 3uk6_A RUVB-like 2; hexameric 97.4 0.00047 1.6E-08 68.4 9.1 40 258-297 68-107 (368)
245 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 0.0001 3.5E-09 63.7 3.7 29 252-281 16-44 (149)
246 2wji_A Ferrous iron transport 97.4 0.00017 5.7E-09 63.0 5.0 25 261-285 4-28 (165)
247 2ohf_A Protein OLA1, GTP-bindi 97.3 8.3E-05 2.9E-09 74.6 3.4 41 256-296 18-69 (396)
248 2p5t_B PEZT; postsegregational 97.3 5.7E-05 1.9E-09 71.4 1.5 41 256-298 28-68 (253)
249 3t61_A Gluconokinase; PSI-biol 97.3 6.3E-05 2.2E-09 68.3 1.7 34 260-297 18-51 (202)
250 2wjg_A FEOB, ferrous iron tran 97.3 0.00013 4.4E-09 64.8 3.6 23 261-283 8-30 (188)
251 1xp8_A RECA protein, recombina 97.3 0.0013 4.5E-08 65.4 11.3 28 256-283 70-97 (366)
252 3dm5_A SRP54, signal recogniti 97.3 0.0017 5.7E-08 66.1 11.8 36 259-294 99-134 (443)
253 1ex7_A Guanylate kinase; subst 97.3 0.0001 3.6E-09 66.2 2.6 74 263-344 4-90 (186)
254 2qag_A Septin-2, protein NEDD5 97.2 2.1E-05 7.3E-10 78.5 -2.2 57 230-294 15-71 (361)
255 1np6_A Molybdopterin-guanine d 97.2 0.00012 4E-09 65.1 2.6 38 260-297 6-46 (174)
256 4ag6_A VIRB4 ATPase, type IV s 97.2 0.00017 5.8E-09 72.7 4.1 56 238-294 11-69 (392)
257 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.0019 6.4E-08 60.6 10.8 26 259-284 38-63 (262)
258 2zej_A Dardarin, leucine-rich 97.2 0.00018 6.1E-09 64.1 3.4 26 262-287 4-29 (184)
259 2v1u_A Cell division control p 97.1 0.00019 6.3E-09 71.6 3.2 28 258-285 42-69 (387)
260 1lw7_A Transcriptional regulat 97.1 5.9E-06 2E-10 82.7 -7.8 87 369-457 258-356 (365)
261 2chg_A Replication factor C sm 97.1 0.00091 3.1E-08 60.5 7.6 44 386-430 101-144 (226)
262 2if2_A Dephospho-COA kinase; a 97.1 0.00024 8.1E-09 64.4 3.5 21 262-282 3-23 (204)
263 1ko7_A HPR kinase/phosphatase; 97.1 0.00026 8.8E-09 68.7 3.6 46 248-294 133-182 (314)
264 2vhj_A Ntpase P4, P4; non- hyd 97.1 0.00078 2.7E-08 65.4 7.0 28 255-282 118-145 (331)
265 3ihw_A Centg3; RAS, centaurin, 97.1 0.0005 1.7E-08 61.2 5.1 36 262-297 22-66 (184)
266 3d8b_A Fidgetin-like protein 1 97.0 0.0019 6.6E-08 64.1 9.7 27 258-284 115-141 (357)
267 3syl_A Protein CBBX; photosynt 97.0 0.0036 1.2E-07 60.3 11.1 25 260-284 67-91 (309)
268 1xwi_A SKD1 protein; VPS4B, AA 97.0 0.0042 1.4E-07 60.6 11.5 27 258-284 43-69 (322)
269 1qhx_A CPT, protein (chloramph 97.0 0.0004 1.4E-08 61.3 3.6 26 260-285 3-28 (178)
270 3cm0_A Adenylate kinase; ATP-b 97.0 0.00032 1.1E-08 62.4 2.9 27 258-284 2-28 (186)
271 2ga8_A Hypothetical 39.9 kDa p 97.0 0.00012 4.1E-09 72.2 -0.1 37 248-284 10-48 (359)
272 2ewv_A Twitching motility prot 96.9 0.00026 9E-09 70.8 2.2 57 377-439 199-255 (372)
273 1fzq_A ADP-ribosylation factor 96.9 0.00046 1.6E-08 61.2 3.5 24 260-283 16-39 (181)
274 1gtv_A TMK, thymidylate kinase 96.9 0.00012 4.1E-09 66.8 -0.5 26 262-287 2-27 (214)
275 2b8t_A Thymidine kinase; deoxy 96.9 0.0011 3.8E-08 61.2 5.8 50 387-440 89-149 (223)
276 3qks_A DNA double-strand break 96.8 0.00061 2.1E-08 62.0 3.7 29 252-281 16-44 (203)
277 3kb2_A SPBC2 prophage-derived 96.8 0.00054 1.8E-08 59.9 3.2 23 262-284 3-25 (173)
278 1jal_A YCHF protein; nucleotid 96.8 0.0008 2.7E-08 66.7 4.6 36 260-295 2-48 (363)
279 2orw_A Thymidine kinase; TMTK, 96.8 0.00089 3E-08 59.9 4.5 52 387-442 76-138 (184)
280 1gvn_B Zeta; postsegregational 96.8 0.00067 2.3E-08 65.3 3.9 35 259-295 32-66 (287)
281 3trf_A Shikimate kinase, SK; a 96.8 0.00062 2.1E-08 60.5 3.4 26 259-284 4-29 (185)
282 3co5_A Putative two-component 96.8 0.0026 8.8E-08 54.2 7.2 28 258-285 25-52 (143)
283 3bgw_A DNAB-like replicative h 96.8 0.0018 6E-08 66.3 7.1 35 249-283 186-220 (444)
284 1kht_A Adenylate kinase; phosp 96.8 0.00065 2.2E-08 60.5 3.4 27 259-285 2-28 (192)
285 1q3t_A Cytidylate kinase; nucl 96.8 0.00067 2.3E-08 63.1 3.3 35 257-291 13-50 (236)
286 2v54_A DTMP kinase, thymidylat 96.8 0.00076 2.6E-08 60.8 3.6 26 259-284 3-28 (204)
287 2rhm_A Putative kinase; P-loop 96.7 0.00071 2.4E-08 60.4 3.2 27 258-284 3-29 (193)
288 3t15_A Ribulose bisphosphate c 96.7 0.0021 7E-08 62.0 6.6 25 260-284 36-60 (293)
289 3cmw_A Protein RECA, recombina 96.7 0.0062 2.1E-07 71.4 11.5 39 257-295 729-768 (1706)
290 3zvl_A Bifunctional polynucleo 96.7 0.0076 2.6E-07 61.1 11.1 29 256-284 254-282 (416)
291 1vht_A Dephospho-COA kinase; s 96.7 0.00099 3.4E-08 61.0 3.9 32 259-295 3-34 (218)
292 3lw7_A Adenylate kinase relate 96.7 0.00082 2.8E-08 58.6 3.2 19 262-280 3-21 (179)
293 3iij_A Coilin-interacting nucl 96.7 0.00056 1.9E-08 60.6 2.0 27 258-284 9-35 (180)
294 2qp9_X Vacuolar protein sortin 96.6 0.0054 1.9E-07 60.7 9.0 27 258-284 82-108 (355)
295 3pfi_A Holliday junction ATP-d 96.6 0.01 3.5E-07 57.9 11.0 25 261-285 56-80 (338)
296 2c95_A Adenylate kinase 1; tra 96.6 0.0011 3.6E-08 59.4 3.2 27 258-284 7-33 (196)
297 2qby_B CDC6 homolog 3, cell di 96.6 0.00063 2.2E-08 67.8 1.8 25 260-284 45-69 (384)
298 2wwf_A Thymidilate kinase, put 96.6 0.0012 4E-08 60.0 3.4 27 258-284 8-34 (212)
299 2zan_A Vacuolar protein sortin 96.5 0.013 4.5E-07 59.8 11.4 27 258-284 165-191 (444)
300 2plr_A DTMP kinase, probable t 96.5 0.0013 4.4E-08 59.6 3.4 28 259-286 3-30 (213)
301 2ze6_A Isopentenyl transferase 96.5 0.0011 3.7E-08 62.5 3.0 24 261-284 2-25 (253)
302 1nn5_A Similar to deoxythymidy 96.5 0.0013 4.5E-08 59.7 3.4 28 257-284 6-33 (215)
303 1via_A Shikimate kinase; struc 96.5 0.00098 3.4E-08 58.7 2.4 23 262-284 6-28 (175)
304 1jr3_A DNA polymerase III subu 96.5 0.0061 2.1E-07 60.3 8.5 43 387-430 119-161 (373)
305 3cbq_A GTP-binding protein REM 96.5 0.0014 4.9E-08 58.8 3.6 22 262-283 25-46 (195)
306 3io5_A Recombination and repai 96.5 0.0049 1.7E-07 59.6 7.3 38 257-295 26-66 (333)
307 2bwj_A Adenylate kinase 5; pho 96.5 0.00057 2E-08 61.4 0.7 29 256-284 8-36 (199)
308 2lkc_A Translation initiation 96.5 0.0035 1.2E-07 54.7 5.8 26 258-283 6-31 (178)
309 2erx_A GTP-binding protein DI- 96.4 0.0026 8.9E-08 55.0 4.8 21 262-282 5-25 (172)
310 1hqc_A RUVB; extended AAA-ATPa 96.4 0.0069 2.4E-07 58.7 8.3 26 259-284 37-62 (324)
311 1ly1_A Polynucleotide kinase; 96.4 0.0015 5.2E-08 57.4 3.2 22 261-282 3-24 (181)
312 3pxi_A Negative regulator of g 96.4 0.0064 2.2E-07 66.5 8.8 23 262-284 523-545 (758)
313 1xjc_A MOBB protein homolog; s 96.4 0.0011 3.9E-08 58.3 2.2 35 261-295 5-42 (169)
314 1tev_A UMP-CMP kinase; ploop, 96.4 0.0017 5.9E-08 57.8 3.3 26 259-284 2-27 (196)
315 2vli_A Antibiotic resistance p 96.4 0.0013 4.4E-08 58.2 2.5 27 258-284 3-29 (183)
316 3u61_B DNA polymerase accessor 96.3 0.0051 1.7E-07 59.8 6.8 44 387-431 105-149 (324)
317 1nks_A Adenylate kinase; therm 96.3 0.0017 5.9E-08 57.7 3.1 24 262-285 3-26 (194)
318 2dby_A GTP-binding protein; GD 96.3 0.0014 4.7E-08 65.3 2.6 22 262-283 3-24 (368)
319 3lxw_A GTPase IMAP family memb 96.3 0.0018 6.2E-08 60.7 3.2 24 261-284 22-45 (247)
320 3q72_A GTP-binding protein RAD 96.3 0.0018 6.3E-08 55.8 3.1 23 262-284 4-26 (166)
321 2qmh_A HPR kinase/phosphorylas 96.3 0.0032 1.1E-07 56.7 4.4 34 249-283 24-57 (205)
322 1z2a_A RAS-related protein RAB 96.3 0.002 6.7E-08 55.6 3.0 22 262-283 7-28 (168)
323 1aky_A Adenylate kinase; ATP:A 96.3 0.0023 8E-08 58.6 3.6 27 258-284 2-28 (220)
324 3fb4_A Adenylate kinase; psych 96.2 0.0021 7.3E-08 58.5 3.2 23 262-284 2-24 (216)
325 2ew1_A RAS-related protein RAB 96.2 0.004 1.4E-07 56.2 5.0 21 262-282 28-48 (201)
326 3t5d_A Septin-7; GTP-binding p 96.2 0.002 7E-08 61.3 3.1 22 262-283 10-31 (274)
327 1z0j_A RAB-22, RAS-related pro 96.2 0.0031 1.1E-07 54.4 4.0 23 262-284 8-30 (170)
328 1zd8_A GTP:AMP phosphotransfer 96.2 0.0021 7E-08 59.3 3.0 27 258-284 5-31 (227)
329 2nzj_A GTP-binding protein REM 96.2 0.0024 8.3E-08 55.5 3.3 23 262-284 6-28 (175)
330 1ksh_A ARF-like protein 2; sma 96.2 0.0051 1.8E-07 54.2 5.5 26 258-283 16-41 (186)
331 3iby_A Ferrous iron transport 96.2 0.0025 8.5E-08 60.1 3.5 23 262-284 3-25 (256)
332 3q85_A GTP-binding protein REM 96.2 0.0025 8.5E-08 55.1 3.2 23 262-284 4-26 (169)
333 1kao_A RAP2A; GTP-binding prot 96.2 0.0023 8E-08 54.9 3.0 21 262-282 5-25 (167)
334 3dl0_A Adenylate kinase; phosp 96.2 0.0021 7.1E-08 58.6 2.8 23 262-284 2-24 (216)
335 3vfd_A Spastin; ATPase, microt 96.2 0.027 9.1E-07 56.3 11.2 27 258-284 146-172 (389)
336 3k53_A Ferrous iron transport 96.2 0.0022 7.6E-08 60.9 3.1 24 262-285 5-28 (271)
337 2cdn_A Adenylate kinase; phosp 96.2 0.0028 9.6E-08 57.1 3.6 25 260-284 20-44 (201)
338 1sxj_B Activator 1 37 kDa subu 96.2 0.0069 2.4E-07 58.4 6.7 43 387-430 107-149 (323)
339 2ged_A SR-beta, signal recogni 96.2 0.0024 8E-08 56.8 3.0 25 260-284 48-72 (193)
340 1zuh_A Shikimate kinase; alpha 96.2 0.0027 9.1E-08 55.4 3.3 25 260-284 7-31 (168)
341 2ce2_X GTPase HRAS; signaling 96.2 0.0023 7.9E-08 54.8 2.8 22 262-283 5-26 (166)
342 2z0h_A DTMP kinase, thymidylat 96.2 0.0025 8.7E-08 56.9 3.2 24 262-285 2-25 (197)
343 2dyk_A GTP-binding protein; GT 96.1 0.0025 8.6E-08 54.5 3.0 23 262-284 3-25 (161)
344 2pt5_A Shikimate kinase, SK; a 96.1 0.0027 9.2E-08 55.3 3.2 23 262-284 2-24 (168)
345 1ukz_A Uridylate kinase; trans 96.1 0.0023 8E-08 57.6 2.9 25 260-284 15-39 (203)
346 3ake_A Cytidylate kinase; CMP 96.1 0.0024 8.2E-08 57.6 3.0 23 262-284 4-26 (208)
347 1u8z_A RAS-related protein RAL 96.1 0.0025 8.7E-08 54.7 3.0 22 262-283 6-27 (168)
348 2oil_A CATX-8, RAS-related pro 96.1 0.0033 1.1E-07 55.8 3.8 22 262-283 27-48 (193)
349 3clv_A RAB5 protein, putative; 96.1 0.0034 1.2E-07 55.9 3.8 23 261-283 8-30 (208)
350 2iyv_A Shikimate kinase, SK; t 96.1 0.0022 7.6E-08 56.8 2.6 24 261-284 3-26 (184)
351 1g16_A RAS-related protein SEC 96.1 0.0025 8.5E-08 55.0 2.8 22 262-283 5-26 (170)
352 1c1y_A RAS-related protein RAP 96.1 0.0026 9E-08 54.7 3.0 21 262-282 5-25 (167)
353 3tw8_B RAS-related protein RAB 96.1 0.0029 9.8E-08 55.3 3.2 22 262-283 11-32 (181)
354 1z08_A RAS-related protein RAB 96.1 0.0027 9.2E-08 54.9 3.0 22 262-283 8-29 (170)
355 3eie_A Vacuolar protein sortin 96.1 0.01 3.5E-07 57.7 7.5 27 258-284 49-75 (322)
356 1zak_A Adenylate kinase; ATP:A 96.1 0.0024 8.1E-08 58.6 2.8 27 259-285 4-30 (222)
357 2grj_A Dephospho-COA kinase; T 96.1 0.0028 9.7E-08 57.0 3.2 24 261-284 13-36 (192)
358 1e6c_A Shikimate kinase; phosp 96.1 0.0025 8.4E-08 55.7 2.7 24 261-284 3-26 (173)
359 1ek0_A Protein (GTP-binding pr 96.1 0.0028 9.5E-08 54.6 3.0 22 262-283 5-26 (170)
360 1wms_A RAB-9, RAB9, RAS-relate 96.1 0.0028 9.7E-08 55.2 3.0 22 262-283 9-30 (177)
361 1ky3_A GTP-binding protein YPT 96.1 0.0028 9.7E-08 55.3 3.0 22 262-283 10-31 (182)
362 1svi_A GTP-binding protein YSX 96.1 0.0027 9.3E-08 56.4 2.9 24 260-283 23-46 (195)
363 3tqf_A HPR(Ser) kinase; transf 96.1 0.0046 1.6E-07 54.3 4.2 34 248-282 5-38 (181)
364 2fn4_A P23, RAS-related protei 96.1 0.0028 9.4E-08 55.4 2.9 22 262-283 11-32 (181)
365 1m7b_A RND3/RHOE small GTP-bin 96.0 0.0045 1.5E-07 54.6 4.2 22 262-283 9-30 (184)
366 3a8t_A Adenylate isopentenyltr 96.0 0.0036 1.2E-07 61.2 3.8 28 258-285 38-65 (339)
367 1a7j_A Phosphoribulokinase; tr 96.0 0.0017 5.9E-08 62.5 1.5 26 259-284 4-29 (290)
368 3pqc_A Probable GTP-binding pr 96.0 0.0029 9.9E-08 56.0 2.9 24 261-284 24-47 (195)
369 2bcg_Y Protein YP2, GTP-bindin 96.0 0.0058 2E-07 54.9 5.0 21 262-282 10-30 (206)
370 1qf9_A UMP/CMP kinase, protein 96.0 0.003 1E-07 56.1 2.9 25 260-284 6-30 (194)
371 2pbr_A DTMP kinase, thymidylat 96.0 0.0033 1.1E-07 55.9 3.2 23 262-284 2-24 (195)
372 1r2q_A RAS-related protein RAB 96.0 0.0032 1.1E-07 54.3 3.0 21 262-282 8-28 (170)
373 3t1o_A Gliding protein MGLA; G 96.0 0.0033 1.1E-07 55.8 3.1 25 262-286 16-40 (198)
374 3tlx_A Adenylate kinase 2; str 96.0 0.0035 1.2E-07 58.6 3.4 26 259-284 28-53 (243)
375 3b1v_A Ferrous iron uptake tra 96.0 0.0033 1.1E-07 59.9 3.3 24 261-284 4-27 (272)
376 3hu3_A Transitional endoplasmi 96.0 0.0095 3.3E-07 61.6 7.0 28 257-284 235-262 (489)
377 4dsu_A GTPase KRAS, isoform 2B 96.0 0.0033 1.1E-07 55.3 3.0 22 262-283 6-27 (189)
378 4b4t_L 26S protease subunit RP 96.0 0.011 3.7E-07 60.0 7.1 30 256-285 211-240 (437)
379 1uj2_A Uridine-cytidine kinase 96.0 0.0033 1.1E-07 59.0 3.2 24 261-284 23-46 (252)
380 2cxx_A Probable GTP-binding pr 95.9 0.0033 1.1E-07 55.5 2.9 22 262-283 3-24 (190)
381 1r8s_A ADP-ribosylation factor 95.9 0.0036 1.2E-07 53.8 3.0 21 262-282 2-22 (164)
382 3bc1_A RAS-related protein RAB 95.9 0.0035 1.2E-07 55.3 3.0 21 262-282 13-33 (195)
383 2hxs_A RAB-26, RAS-related pro 95.9 0.004 1.4E-07 54.2 3.3 22 262-283 8-29 (178)
384 3t5g_A GTP-binding protein RHE 95.9 0.0062 2.1E-07 53.3 4.5 20 262-281 8-27 (181)
385 1upt_A ARL1, ADP-ribosylation 95.9 0.0038 1.3E-07 53.9 3.0 23 260-282 7-29 (171)
386 2y8e_A RAB-protein 6, GH09086P 95.9 0.0036 1.2E-07 54.5 2.8 21 262-282 16-36 (179)
387 3kkq_A RAS-related protein M-R 95.9 0.0076 2.6E-07 52.8 5.0 21 262-282 20-40 (183)
388 2g6b_A RAS-related protein RAB 95.9 0.0039 1.3E-07 54.4 3.0 22 262-283 12-33 (180)
389 4bas_A ADP-ribosylation factor 95.8 0.0058 2E-07 54.3 4.1 22 261-282 18-39 (199)
390 3a4m_A L-seryl-tRNA(SEC) kinas 95.8 0.0044 1.5E-07 58.5 3.4 27 258-284 2-28 (260)
391 2gf0_A GTP-binding protein DI- 95.8 0.0067 2.3E-07 53.9 4.4 22 261-282 9-30 (199)
392 1moz_A ARL1, ADP-ribosylation 95.8 0.0033 1.1E-07 55.2 2.3 24 259-282 17-40 (183)
393 3auy_A DNA double-strand break 95.8 0.0057 2E-07 60.9 4.3 31 250-281 16-46 (371)
394 1wf3_A GTP-binding protein; GT 95.8 0.0043 1.5E-07 60.0 3.2 22 262-283 9-30 (301)
395 3con_A GTPase NRAS; structural 95.8 0.0042 1.4E-07 55.0 3.0 22 262-283 23-44 (190)
396 2efe_B Small GTP-binding prote 95.8 0.0043 1.5E-07 54.2 3.0 22 262-283 14-35 (181)
397 1z0f_A RAB14, member RAS oncog 95.8 0.0043 1.5E-07 54.0 3.0 22 262-283 17-38 (179)
398 2xtp_A GTPase IMAP family memb 95.8 0.0043 1.5E-07 58.3 3.1 23 261-283 23-45 (260)
399 2f6r_A COA synthase, bifunctio 95.8 0.0043 1.5E-07 59.3 3.2 23 260-282 75-97 (281)
400 1qvr_A CLPB protein; coiled co 95.8 0.012 4.2E-07 65.2 7.2 35 261-295 589-624 (854)
401 2a9k_A RAS-related protein RAL 95.8 0.0045 1.5E-07 54.3 3.0 21 262-282 20-40 (187)
402 1gwn_A RHO-related GTP-binding 95.8 0.0069 2.4E-07 54.8 4.2 22 262-283 30-51 (205)
403 2fv8_A H6, RHO-related GTP-bin 95.8 0.0025 8.5E-08 57.6 1.2 35 249-283 14-48 (207)
404 3be4_A Adenylate kinase; malar 95.7 0.0049 1.7E-07 56.4 3.2 26 259-284 4-29 (217)
405 2bme_A RAB4A, RAS-related prot 95.7 0.0045 1.6E-07 54.4 2.8 22 262-283 12-33 (186)
406 2gf9_A RAS-related protein RAB 95.7 0.0049 1.7E-07 54.6 3.0 22 262-283 24-45 (189)
407 2cjw_A GTP-binding protein GEM 95.7 0.0049 1.7E-07 55.1 3.0 22 262-283 8-29 (192)
408 2fg5_A RAB-22B, RAS-related pr 95.7 0.0048 1.6E-07 54.9 2.9 22 262-283 25-46 (192)
409 2j37_W Signal recognition part 95.7 0.013 4.5E-07 60.6 6.5 26 260-285 101-126 (504)
410 2il1_A RAB12; G-protein, GDP, 95.7 0.0054 1.8E-07 54.6 3.2 22 262-283 28-49 (192)
411 1iqp_A RFCS; clamp loader, ext 95.7 0.0037 1.3E-07 60.5 2.2 42 387-429 110-151 (327)
412 1vg8_A RAS-related protein RAB 95.7 0.005 1.7E-07 55.2 3.0 22 262-283 10-31 (207)
413 2qu8_A Putative nucleolar GTP- 95.7 0.0055 1.9E-07 56.3 3.3 23 261-283 30-52 (228)
414 4dhe_A Probable GTP-binding pr 95.7 0.0029 1E-07 57.7 1.4 25 260-284 29-53 (223)
415 1sky_E F1-ATPase, F1-ATP synth 95.7 0.0027 9.1E-08 64.9 1.2 43 249-292 141-183 (473)
416 3cmu_A Protein RECA, recombina 95.7 0.041 1.4E-06 65.4 11.2 39 257-295 380-419 (2050)
417 2bov_A RAla, RAS-related prote 95.7 0.0051 1.7E-07 55.1 3.0 22 262-283 16-37 (206)
418 1z06_A RAS-related protein RAB 95.7 0.0053 1.8E-07 54.4 3.0 21 262-282 22-42 (189)
419 3reg_A RHO-like small GTPase; 95.7 0.0084 2.9E-07 53.3 4.4 22 262-283 25-46 (194)
420 2r8r_A Sensor protein; KDPD, P 95.7 0.0075 2.6E-07 55.5 4.0 23 259-281 4-27 (228)
421 1e4v_A Adenylate kinase; trans 95.7 0.0053 1.8E-07 55.9 3.0 23 262-284 2-24 (214)
422 3oes_A GTPase rhebl1; small GT 95.6 0.005 1.7E-07 55.2 2.8 23 261-283 25-47 (201)
423 1zbd_A Rabphilin-3A; G protein 95.6 0.0058 2E-07 54.7 3.2 22 262-283 10-31 (203)
424 3tkl_A RAS-related protein RAB 95.6 0.0054 1.8E-07 54.4 3.0 22 262-283 18-39 (196)
425 3d3q_A TRNA delta(2)-isopenten 95.6 0.0051 1.7E-07 60.3 2.9 25 261-285 8-32 (340)
426 3exa_A TRNA delta(2)-isopenten 95.6 0.0063 2.2E-07 58.8 3.6 25 260-284 3-27 (322)
427 3cmw_A Protein RECA, recombina 95.6 0.035 1.2E-06 65.1 10.3 35 249-284 370-407 (1706)
428 2h57_A ADP-ribosylation factor 95.6 0.0053 1.8E-07 54.4 2.8 24 261-284 22-45 (190)
429 3i8s_A Ferrous iron transport 95.6 0.0056 1.9E-07 58.3 3.2 23 262-284 5-27 (274)
430 3iev_A GTP-binding protein ERA 95.6 0.0057 1.9E-07 59.3 3.2 23 261-283 11-33 (308)
431 1mh1_A RAC1; GTP-binding, GTPa 95.6 0.0057 2E-07 53.6 3.0 21 262-282 7-27 (186)
432 1nrj_B SR-beta, signal recogni 95.6 0.0056 1.9E-07 55.6 3.0 24 261-284 13-36 (218)
433 3dz8_A RAS-related protein RAB 95.6 0.0055 1.9E-07 54.4 2.8 23 262-284 25-47 (191)
434 3llu_A RAS-related GTP-binding 95.6 0.0065 2.2E-07 54.3 3.3 26 261-286 21-46 (196)
435 2o52_A RAS-related protein RAB 95.6 0.0062 2.1E-07 54.6 3.1 22 262-283 27-48 (200)
436 2a5j_A RAS-related protein RAB 95.5 0.006 2.1E-07 54.1 3.0 22 262-283 23-44 (191)
437 4b4t_K 26S protease regulatory 95.5 0.071 2.4E-06 53.9 11.1 29 256-284 202-230 (428)
438 2h92_A Cytidylate kinase; ross 95.5 0.0052 1.8E-07 56.0 2.5 25 260-284 3-27 (219)
439 1ypw_A Transitional endoplasmi 95.5 0.00067 2.3E-08 74.8 -4.2 46 253-300 504-549 (806)
440 3cnl_A YLQF, putative uncharac 95.5 0.007 2.4E-07 57.3 3.4 30 261-290 100-129 (262)
441 1zj6_A ADP-ribosylation factor 95.5 0.0066 2.3E-07 53.6 3.1 24 259-282 15-38 (187)
442 2xb4_A Adenylate kinase; ATP-b 95.5 0.0067 2.3E-07 55.7 3.2 23 262-284 2-24 (223)
443 3a1s_A Iron(II) transport prot 95.5 0.0068 2.3E-07 57.2 3.3 23 262-284 7-29 (258)
444 1h65_A Chloroplast outer envel 95.5 0.0063 2.2E-07 57.7 3.1 23 262-284 41-63 (270)
445 3def_A T7I23.11 protein; chlor 95.5 0.0065 2.2E-07 57.3 3.2 22 262-283 38-59 (262)
446 2h17_A ADP-ribosylation factor 95.5 0.0058 2E-07 53.7 2.6 23 261-283 22-44 (181)
447 4b4t_M 26S protease regulatory 95.5 0.019 6.6E-07 58.1 6.7 29 256-284 211-239 (434)
448 2atv_A RERG, RAS-like estrogen 95.5 0.0067 2.3E-07 54.1 3.0 23 261-283 29-51 (196)
449 1zd9_A ADP-ribosylation factor 95.5 0.0067 2.3E-07 53.7 3.0 21 262-282 24-44 (188)
450 1ak2_A Adenylate kinase isoenz 95.5 0.0081 2.8E-07 55.5 3.6 26 259-284 15-40 (233)
451 3cph_A RAS-related protein SEC 95.5 0.0067 2.3E-07 54.6 3.0 24 260-283 20-43 (213)
452 2p5s_A RAS and EF-hand domain 95.4 0.0069 2.3E-07 54.2 3.0 24 260-283 28-51 (199)
453 2j1l_A RHO-related GTP-binding 95.4 0.0073 2.5E-07 54.9 3.2 21 262-282 36-56 (214)
454 1x3s_A RAS-related protein RAB 95.4 0.007 2.4E-07 53.6 3.0 22 262-283 17-38 (195)
455 1jwy_B Dynamin A GTPase domain 95.4 0.0068 2.3E-07 58.6 3.1 23 262-284 26-48 (315)
456 3bwd_D RAC-like GTP-binding pr 95.4 0.0081 2.8E-07 52.5 3.3 24 260-283 8-31 (182)
457 3tmk_A Thymidylate kinase; pho 95.4 0.0085 2.9E-07 54.9 3.4 29 258-286 3-31 (216)
458 2f7s_A C25KG, RAS-related prot 95.4 0.0081 2.8E-07 54.4 3.3 22 262-283 27-48 (217)
459 3c5c_A RAS-like protein 12; GD 95.4 0.0076 2.6E-07 53.4 3.0 21 262-282 23-43 (187)
460 2iwr_A Centaurin gamma 1; ANK 95.4 0.0056 1.9E-07 53.4 2.1 22 261-282 8-29 (178)
461 3cmu_A Protein RECA, recombina 95.4 0.02 6.9E-07 68.0 7.3 35 248-282 1067-1103(2050)
462 2q3h_A RAS homolog gene family 95.4 0.0083 2.8E-07 53.6 3.2 24 260-283 20-43 (201)
463 1jbk_A CLPB protein; beta barr 95.4 0.0086 2.9E-07 52.5 3.3 28 258-285 41-68 (195)
464 2b6h_A ADP-ribosylation factor 95.4 0.0079 2.7E-07 53.6 3.1 25 258-282 27-51 (192)
465 2aka_B Dynamin-1; fusion prote 95.4 0.007 2.4E-07 57.9 2.9 24 261-284 27-50 (299)
466 3v9p_A DTMP kinase, thymidylat 95.3 0.0072 2.5E-07 55.9 2.7 28 258-285 23-50 (227)
467 3crm_A TRNA delta(2)-isopenten 95.3 0.0075 2.6E-07 58.7 3.0 25 261-285 6-30 (323)
468 3pvs_A Replication-associated 95.3 0.0022 7.6E-08 65.6 -0.8 124 251-397 39-166 (447)
469 2gco_A H9, RHO-related GTP-bin 95.3 0.0075 2.6E-07 54.1 2.8 22 262-283 27-48 (201)
470 2fu5_C RAS-related protein RAB 95.3 0.0055 1.9E-07 53.8 1.9 22 262-283 10-31 (183)
471 2g3y_A GTP-binding protein GEM 95.3 0.0089 3E-07 54.5 3.3 23 261-283 38-60 (211)
472 2wsm_A Hydrogenase expression/ 95.3 0.0076 2.6E-07 54.8 2.9 24 261-284 31-54 (221)
473 4edh_A DTMP kinase, thymidylat 95.3 0.0095 3.2E-07 54.5 3.4 29 258-286 4-32 (213)
474 4djt_A GTP-binding nuclear pro 95.3 0.005 1.7E-07 55.9 1.5 22 262-283 13-34 (218)
475 1p5z_B DCK, deoxycytidine kina 95.3 0.0071 2.4E-07 57.0 2.5 28 258-285 22-49 (263)
476 2fh5_B SR-beta, signal recogni 95.2 0.012 3.9E-07 53.3 3.7 23 261-283 8-30 (214)
477 3lv8_A DTMP kinase, thymidylat 95.2 0.01 3.5E-07 55.2 3.4 28 259-286 26-53 (236)
478 3foz_A TRNA delta(2)-isopenten 95.2 0.0095 3.3E-07 57.4 3.2 26 260-285 10-35 (316)
479 3q3j_B RHO-related GTP-binding 95.2 0.013 4.3E-07 53.3 3.9 23 261-283 28-50 (214)
480 2atx_A Small GTP binding prote 95.2 0.0093 3.2E-07 52.9 2.9 22 262-283 20-41 (194)
481 2x77_A ADP-ribosylation factor 95.2 0.0076 2.6E-07 53.3 2.3 24 259-282 21-44 (189)
482 2ocp_A DGK, deoxyguanosine kin 95.2 0.0095 3.3E-07 55.3 3.1 27 259-285 1-27 (241)
483 3r7w_A Gtpase1, GTP-binding pr 95.2 0.01 3.5E-07 57.4 3.4 26 259-284 2-27 (307)
484 4gzl_A RAS-related C3 botulinu 95.2 0.0099 3.4E-07 53.5 3.0 23 260-282 30-52 (204)
485 3ld9_A DTMP kinase, thymidylat 95.2 0.011 3.8E-07 54.4 3.4 28 258-285 19-46 (223)
486 2chq_A Replication factor C sm 95.1 0.01 3.5E-07 57.1 3.3 23 262-284 40-62 (319)
487 4tmk_A Protein (thymidylate ki 95.1 0.011 3.9E-07 53.9 3.4 27 259-285 2-28 (213)
488 4b4t_J 26S protease regulatory 95.1 0.029 9.8E-07 56.2 6.5 29 257-285 179-207 (405)
489 1ltq_A Polynucleotide kinase; 95.1 0.01 3.5E-07 57.0 3.2 23 261-283 3-25 (301)
490 3umf_A Adenylate kinase; rossm 95.1 0.0071 2.4E-07 55.5 1.9 29 256-284 25-53 (217)
491 1a5t_A Delta prime, HOLB; zinc 95.1 0.093 3.2E-06 51.2 10.1 42 387-429 108-149 (334)
492 3euj_A Chromosome partition pr 95.0 0.047 1.6E-06 56.0 7.9 77 361-441 371-464 (483)
493 2hf9_A Probable hydrogenase ni 95.0 0.011 3.7E-07 54.0 2.8 24 261-284 39-62 (226)
494 2hup_A RAS-related protein RAB 95.0 0.011 3.8E-07 53.0 2.9 22 262-283 31-52 (201)
495 2xxa_A Signal recognition part 95.0 0.1 3.4E-06 53.0 10.2 35 259-293 99-134 (433)
496 4b4t_H 26S protease regulatory 94.9 0.033 1.1E-06 56.6 6.3 29 256-284 239-267 (467)
497 3geh_A MNME, tRNA modification 94.9 0.012 4E-07 60.5 3.0 26 258-283 222-247 (462)
498 2p65_A Hypothetical protein PF 94.9 0.01 3.6E-07 51.8 2.4 29 258-286 41-69 (187)
499 1puj_A YLQF, conserved hypothe 94.9 0.016 5.6E-07 55.3 3.8 28 260-287 120-147 (282)
500 3cpj_B GTP-binding protein YPT 94.9 0.013 4.4E-07 53.5 3.0 22 262-283 15-36 (223)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.2e-97 Score=857.21 Aligned_cols=468 Identities=22% Similarity=0.307 Sum_probs=376.1
Q ss_pred CCcccc--CCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 1 MLFFDS--TPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAR 78 (479)
Q Consensus 1 ~~~f~~--~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 78 (479)
++||+. +++|++++|+++|++.++..++..+..++..++.+++.++++++++|++++++++++++..+...++.+..+
T Consensus 842 ~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~ 921 (1321)
T 4f4c_A 842 IGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFT 921 (1321)
T ss_dssp SSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred chhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579986 789999999999999999999999999999999999999999999999998877777666655544443332
Q ss_pred HHHHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 79 ELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI 158 (479)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (479)
.......+..++....+.|+++|+++||+|++|+.+.++|.+..+...+...+......+...+...+..+...++.++.
T Consensus 922 ~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 1001 (1321)
T 4f4c_A 922 GKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMG 1001 (1321)
T ss_dssp SCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22333334455677888999999999999999999999999988887776555444443333333222222222222222
Q ss_pred HH--hCCccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEE
Q 011713 159 VL--LPGKHL--PGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIE 234 (479)
Q Consensus 159 ~~--~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~ 234 (479)
.. ..+..+ .+.+..++.+......++..+...+..++++..+++|+.++++.+++.+. ...+...++..|.|+
T Consensus 1002 ~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~~~~~~~~g~I~ 1078 (1321)
T 4f4c_A 1002 LALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDS---LSLAGEKKKLYGKVI 1078 (1321)
T ss_dssp HHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCT---TCCCSBCCCCCCCEE
T ss_pred HHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCC---ccCCCCCCCCCCeEE
Confidence 21 223333 33333333333333345556667778889999999999999987665432 122233456678999
Q ss_pred EEeEEEEeCCC-CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEE
Q 011713 235 LEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (479)
Q Consensus 235 ~~~vsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V 313 (479)
|+||+|+||++ +.+||+||||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+|++++++++||++|++|
T Consensus 1079 f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V 1158 (1321)
T 4f4c_A 1079 FKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIV 1158 (1321)
T ss_dssp EEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEE
T ss_pred EEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 99999999754 34699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccHHhhcCCC---CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCE
Q 011713 314 PQEPTLFRGSVRTNLDPL---GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 390 (479)
Q Consensus 314 ~Q~~~lF~gTi~eNi~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~i 390 (479)
||||+||+|||||||+++ ++++|+++++||++|++++||++||+||||+|||+|.+|||||||||||||||+|||+|
T Consensus 1159 ~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~I 1238 (1321)
T 4f4c_A 1159 SQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKI 1238 (1321)
T ss_dssp CSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSE
T ss_pred CCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCE
Confidence 999999999999999876 36899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHHHH
Q 011713 391 LILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEYRS 470 (479)
Q Consensus 391 liLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~~~ 470 (479)
||||||||+||++||+.|+++|++.+++||+|+||||++|+++||||+|||+|+|+|+|+|+||++++|.|++||+.|..
T Consensus 1239 LiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~~g~y~~L~~~Q~~ 1318 (1321)
T 4f4c_A 1239 LLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQMT 1318 (1321)
T ss_dssp EEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHCC------------
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred h
Q 011713 471 S 471 (479)
Q Consensus 471 ~ 471 (479)
.
T Consensus 1319 e 1319 (1321)
T 4f4c_A 1319 E 1319 (1321)
T ss_dssp -
T ss_pred c
Confidence 3
No 2
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1e-95 Score=843.30 Aligned_cols=468 Identities=21% Similarity=0.285 Sum_probs=408.7
Q ss_pred CCccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (479)
Q Consensus 1 ~~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
++||+++++|++++|+++|++.++..+...+..++..++.++++++++++++|+++++++.++++..++..++.+..++.
T Consensus 184 ~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~ 263 (1321)
T 4f4c_A 184 ISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTF 263 (1321)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999887766666666666666666666
Q ss_pred HHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 011713 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI-- 158 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 158 (479)
.+......++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+......+......++..+..+++.++.
T Consensus 264 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 343 (1321)
T 4f4c_A 264 AIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVG 343 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667778888999999999999999999999999999888777766555544444443333333333333333322
Q ss_pred HHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeE
Q 011713 159 VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (479)
Q Consensus 159 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~v 238 (479)
....|.+++|.+.+++.|...+..|+..+...+..++++.++++|++++++.+++.+...+. .....+..++|+|+||
T Consensus 344 ~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~--~~~~~~~~g~I~~~nv 421 (1321)
T 4f4c_A 344 WVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKA--GRKDMKIKGDITVENV 421 (1321)
T ss_dssp HHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSC--CCCCCCCCCCEEEEEE
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc--cccCCCCCCcEEEEEe
Confidence 22458899999999999999999999999999999999999999999999976653321111 1112234678999999
Q ss_pred EEEeCCC-CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCC
Q 011713 239 KVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (479)
Q Consensus 239 sf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~ 317 (479)
+|+|+.. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.++||++||||||+|
T Consensus 422 sF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~ 501 (1321)
T 4f4c_A 422 HFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEP 501 (1321)
T ss_dssp EECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSC
T ss_pred eeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcc
Confidence 9999753 457999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCC
Q 011713 318 TLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEA 396 (479)
Q Consensus 318 ~lF~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~ 396 (479)
+||+|||||||.++. ++++|++++||+.|++++||+.||+||||.|||+|.+||||||||||||||+++||+|||||||
T Consensus 502 ~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~ 581 (1321)
T 4f4c_A 502 ALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEA 581 (1321)
T ss_dssp CCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred eeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecc
Confidence 999999999999875 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHHHH
Q 011713 397 TASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEYRS 470 (479)
Q Consensus 397 TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~~~ 470 (479)
|||||+++|+.++++|+++.++||+|+||||++++++||+|+||++|+|+|+|+|+||++++|.|+++++.|..
T Consensus 582 tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~~q~~ 655 (1321)
T 4f4c_A 582 TSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQTF 655 (1321)
T ss_dssp TTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987753
No 3
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.8e-90 Score=739.48 Aligned_cols=467 Identities=24% Similarity=0.333 Sum_probs=400.1
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
.||+++++|++++|+++|++.++.++...+..++..++.+++.+++++.++|+++++++.++++..++..++.+..++..
T Consensus 112 ~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~ 191 (587)
T 3qf4_A 112 SNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLF 191 (587)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999988888888888888888899999999988776666665555555555555555
Q ss_pred HHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 011713 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 159 (479)
+...+..+++.+.+.|.++|+++||+|++|+.+.++|.+..+...+...+......+......++..+..++++++ ..
T Consensus 192 ~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~ 271 (587)
T 3qf4_A 192 RKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVL 271 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677888999999999999999999999999999888777766655444433333333333333322222222 12
Q ss_pred HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEE
Q 011713 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (479)
Q Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vs 239 (479)
...|.+++|.+.+++.|...+..++..+...+..++++..+++|+.++++.+++.+.. ..+...++..+.|+++||+
T Consensus 272 v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~i~~~~v~ 348 (587)
T 3qf4_A 272 VRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEA---DNALALPNVEGSVSFENVE 348 (587)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCC---TTCBCCSCCCCCEEEEEEE
T ss_pred HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC---CCccccCCCCCcEEEEEEE
Confidence 2458899999999999998888899889999999999999999999999876543211 1111111245689999999
Q ss_pred EEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCcc
Q 011713 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (479)
Q Consensus 240 f~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~l 319 (479)
|+|+++.+++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|++
T Consensus 349 ~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 428 (587)
T 3qf4_A 349 FRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVL 428 (587)
T ss_dssp ECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCC
T ss_pred EEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcC
Confidence 99986666799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 011713 320 FRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA 398 (479)
Q Consensus 320 F~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TS 398 (479)
|++||+|||.++. +.++++++++++.++++++++++|+||||.+||+|.+||||||||++||||++++|+|||||||||
T Consensus 429 f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts 508 (587)
T 3qf4_A 429 FSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTS 508 (587)
T ss_dssp CSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCT
T ss_pred cCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 9999999998764 588999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHHHHh
Q 011713 399 SIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEYRSS 471 (479)
Q Consensus 399 aLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~~~~ 471 (479)
+||+++|+.+++.+++..+++|+|+||||+++++.||||++|++|+|+|+|+|+||+++++.|+++|+.+...
T Consensus 509 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~~ 581 (587)
T 3qf4_A 509 SVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYESQFGN 581 (587)
T ss_dssp TSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHHhcc
Confidence 9999999999999999989999999999999999999999999999999999999999999999999887543
No 4
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.4e-90 Score=741.83 Aligned_cols=469 Identities=26% Similarity=0.368 Sum_probs=408.2
Q ss_pred CCccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (479)
Q Consensus 1 ~~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
++||+++++|++++|+++|++.++..+...+..++..++.+++.+++++.++|+++++++.++++..++..++.+..++.
T Consensus 125 ~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~ 204 (598)
T 3qf4_B 125 VGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKY 204 (598)
T ss_dssp THHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999899999999999999999999999999887766666666666666666666
Q ss_pred HHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 011713 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI-- 158 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 158 (479)
.+...+..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...+......+......++..+..++++++.
T Consensus 205 ~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 284 (598)
T 3qf4_B 205 FYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGW 284 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677778889999999999999999999999999999888877766555544444444444444443333332222
Q ss_pred HHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeE
Q 011713 159 VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (479)
Q Consensus 159 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~v 238 (479)
....|.+++|.+++++.|...+..++..+...+..++++..+++|+.++++.+++.+.. . ....++..+.|+++||
T Consensus 285 l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~--~--~~~~~~~~~~i~~~~v 360 (598)
T 3qf4_B 285 LALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDP--D--AVELREVRGEIEFKNV 360 (598)
T ss_dssp HGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCS--S--CCCCCSCCCCEEEEEE
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--C--CCCCCCCCCeEEEEEE
Confidence 22347889999989888888888899999999999999999999999999987653211 1 1111234568999999
Q ss_pred EEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCc
Q 011713 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (479)
Q Consensus 239 sf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~ 318 (479)
+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|+
T Consensus 361 ~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~ 439 (598)
T 3qf4_B 361 WFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTI 439 (598)
T ss_dssp ECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCC
T ss_pred EEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCc
Confidence 9999754 459999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 011713 319 LFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (479)
Q Consensus 319 lF~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~T 397 (479)
+|++||+|||.++. ..++++++++++.++++++++++|+||||.+||+|.+||||||||++||||++++|+||||||||
T Consensus 440 lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpt 519 (598)
T 3qf4_B 440 LFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEAT 519 (598)
T ss_dssp CCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCC
T ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 99999999998764 57889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHHHHhhhh
Q 011713 398 ASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEYRSSYKR 474 (479)
Q Consensus 398 SaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~~~~~~~ 474 (479)
|+||+++++.+++.+++..+++|+|+||||+++++.||+|++|++|+|+++|+|+||++++|.|+++++.+.....+
T Consensus 520 s~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~ 596 (598)
T 3qf4_B 520 SNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQYGLVVE 596 (598)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHHHHHHHHGGGGG
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHHhhhhhc
Confidence 99999999999999999888999999999999999999999999999999999999999999999999988765544
No 5
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.1e-89 Score=735.53 Aligned_cols=464 Identities=23% Similarity=0.330 Sum_probs=400.5
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
+||+++++|++++|+++|++.++.++...+..++..++.+++++++++.++|+++++++.++++...+..++.++.++..
T Consensus 110 ~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~ 189 (578)
T 4a82_A 110 RFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLT 189 (578)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999988887777888888888888999999999988876666666555556666666666
Q ss_pred HHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 011713 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 159 (479)
+...+..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...+......+.......+..+..+++.++ ..
T Consensus 190 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~ 269 (578)
T 4a82_A 190 RERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYL 269 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777889999999999999999999999999999988877766655554444444443333333322222222 12
Q ss_pred HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEE
Q 011713 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (479)
Q Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vs 239 (479)
...|.+++|.+.+++.|...+..|+..+...+..++++..+++|+.++++.+++.+.. ......++..+.|+++||+
T Consensus 270 v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~i~~~~v~ 346 (578)
T 4a82_A 270 AISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNG---VGAQPIEIKQGRIDIDHVS 346 (578)
T ss_dssp HHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCC---TTCCCCCCCSCCEEEEEEE
T ss_pred HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC---CCccccCCCCCeEEEEEEE
Confidence 2347889999999999999999999999999999999999999999999976653211 1111112245689999999
Q ss_pred EEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCcc
Q 011713 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (479)
Q Consensus 240 f~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~l 319 (479)
|+|++..+++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|++
T Consensus 347 ~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l 426 (578)
T 4a82_A 347 FQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNIL 426 (578)
T ss_dssp ECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCC
T ss_pred EEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCcc
Confidence 99986556799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 011713 320 FRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA 398 (479)
Q Consensus 320 F~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TS 398 (479)
|++||+|||.++. +.++++++++++.++++++++++|+|+||.+||+|.+||||||||++||||++++|+|||||||||
T Consensus 427 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts 506 (578)
T 4a82_A 427 FSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATS 506 (578)
T ss_dssp CSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred CcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 9999999998754 578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHH
Q 011713 399 SIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEY 468 (479)
Q Consensus 399 aLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~ 468 (479)
+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|++|+|+++|+|+||+++++.|+++|+.|
T Consensus 507 ~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~~q 576 (578)
T 4a82_A 507 ALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQ 576 (578)
T ss_dssp TCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHhh
Confidence 9999999999999999988999999999999999999999999999999999999999999999998654
No 6
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=5.2e-88 Score=723.58 Aligned_cols=463 Identities=21% Similarity=0.350 Sum_probs=406.4
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
+||+++++|++++|+++|++.++.++...+..++..++.+++.++++++++|+++++++.++++..++...+.+..++..
T Consensus 114 ~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~ 193 (582)
T 3b5x_A 114 RFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKIS 193 (582)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999988999999999999999999999999988877666666666666666666666
Q ss_pred HHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 011713 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI--V 159 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 159 (479)
+...+..+++.+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+......+......++..+...+++++. .
T Consensus 194 ~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 273 (582)
T 3b5x_A 194 RNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVD 273 (582)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667778899999999999999999999999999999988888777666666666655555555444433333221 2
Q ss_pred HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEE
Q 011713 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLK 239 (479)
Q Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vs 239 (479)
...|.+++|.+.+++.|...+..|+..+...+..++++..+++|+.++++.+++.+. ...+ .++..+.|+++||+
T Consensus 274 v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~i~~~~v~ 348 (582)
T 3b5x_A 274 SIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN---GKYE--AERVNGEVDVKDVT 348 (582)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC---CCCC--CCCCCCeEEEEEEE
Confidence 245889999999999999999999999999999999999999999999987654321 1111 11234579999999
Q ss_pred EEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCcc
Q 011713 240 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 319 (479)
Q Consensus 240 f~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~l 319 (479)
|+|+++.+++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|++
T Consensus 349 ~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l 428 (582)
T 3b5x_A 349 FTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHL 428 (582)
T ss_pred EEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCcc
Confidence 99975435699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhcCCCC--CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 011713 320 FRGSVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (479)
Q Consensus 320 F~gTi~eNi~~~~--~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~T 397 (479)
|++|++|||.++. +.++++++++++.++++++++++|+||||.+||+|.+||||||||++||||++++|+||||||||
T Consensus 429 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpt 508 (582)
T 3b5x_A 429 FNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEAT 508 (582)
T ss_pred ccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 9999999998754 57889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHHH
Q 011713 398 ASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEYR 469 (479)
Q Consensus 398 SaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~~ 469 (479)
|+||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|+|++.|+|+||+++++.|+++++.|.
T Consensus 509 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b5x_A 509 SALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQF 580 (582)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHhh
Confidence 999999999999999998889999999999999999999999999999999999999999999999998774
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=4.6e-88 Score=723.96 Aligned_cols=463 Identities=21% Similarity=0.305 Sum_probs=406.3
Q ss_pred CCccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (479)
Q Consensus 1 ~~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
++||+++++|++++|+++|++.++.++...+..++..++.+++.++++++++|+++++++.++++..++..++.+..++.
T Consensus 113 ~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 192 (582)
T 3b60_A 113 VAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSI 192 (582)
T ss_dssp STHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999998877666666666666666666666
Q ss_pred HHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLIVL 160 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (479)
.+...+..+++.+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+......+......++..+...+++++..+
T Consensus 193 ~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 272 (582)
T 3b60_A 193 SKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASF 272 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777889999999999999999999999999999998888877776666666666655555544443333333221
Q ss_pred --hCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeE
Q 011713 161 --LPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (479)
Q Consensus 161 --~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~v 238 (479)
..|.+++|.+.+++.|...+..|+..+...+..++++..+++|+.++++.+++.+. ...+ .++..+.|+++||
T Consensus 273 ~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~i~~~~v 347 (582)
T 3b60_A 273 PSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE---GKRV--IDRATGDLEFRNV 347 (582)
T ss_dssp SSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC---CCBC--CSCCCCCEEEEEE
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC---CCCC--CCCCCCcEEEEEE
Confidence 23788999999999999999999999999999999999999999999987654321 1111 1123457999999
Q ss_pred EEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCc
Q 011713 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 318 (479)
Q Consensus 239 sf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~ 318 (479)
+|+|+++.+++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|.
T Consensus 348 ~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~ 427 (582)
T 3b60_A 348 TFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVH 427 (582)
T ss_dssp EECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCC
T ss_pred EEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCc
Confidence 99997543569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHhhcCCCC--CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCC
Q 011713 319 LFRGSVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEA 396 (479)
Q Consensus 319 lF~gTi~eNi~~~~--~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~ 396 (479)
+|++|++|||.++. +.++++++++++.++++++++++|+||||.+||+|.+||||||||++||||++++|+|||||||
T Consensus 428 l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEp 507 (582)
T 3b60_A 428 LFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 507 (582)
T ss_dssp CCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETT
T ss_pred CCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECc
Confidence 99999999998753 5789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHH
Q 011713 397 TASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEY 468 (479)
Q Consensus 397 TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~ 468 (479)
||+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|++|+|++.|+|+||+++++.|+++++.|
T Consensus 508 ts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q 579 (582)
T 3b60_A 508 TSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579 (582)
T ss_dssp TSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHh
Confidence 999999999999999999878999999999999999999999999999999999999999999999999876
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=3.5e-87 Score=718.93 Aligned_cols=468 Identities=26% Similarity=0.355 Sum_probs=387.0
Q ss_pred CccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 2 LFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELM 81 (479)
Q Consensus 2 ~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (479)
+||+++++|++++|+++|++.++..+...+..++..++.+++.++++++++|+++++++..+++..++...+.+..++..
T Consensus 111 ~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~ 190 (595)
T 2yl4_A 111 AFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLT 190 (595)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999888889999999999999999999999988766666655555555555555566
Q ss_pred HHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 011713 82 RMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALL--IV 159 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 159 (479)
+...+..+++.+.+.|.++|+++||+|+.|+.+.++|.+..+...+...+......+......++..+..+++.++ ..
T Consensus 191 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 270 (595)
T 2yl4_A 191 KVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLL 270 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666667788999999999999999999999999999988888777666555555555444444433333322222 12
Q ss_pred HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCcc-EEEEeE
Q 011713 160 LLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGR-IELEDL 238 (479)
Q Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~-I~~~~v 238 (479)
...|.+++|.+.+++.|...+..|+..+...+..++++..+++|+.++++.+++.+.. .. ..+ ..+..+. |+++||
T Consensus 271 v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~~-~~~-~~~~~~~~i~~~~v 347 (595)
T 2yl4_A 271 MGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFN-EG-VIL-NEKSFQGALEFKNV 347 (595)
T ss_dssp HHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSS-CS-BCC-CTTTCCCCEEEEEE
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC-CC-CCC-CcCCCCCeEEEEEE
Confidence 3458899999999999999999999999999999999999999999999876543211 11 111 1123457 999999
Q ss_pred EEEeCCC-CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCC
Q 011713 239 KVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (479)
Q Consensus 239 sf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~ 317 (479)
+|+|++. .+++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|
T Consensus 348 ~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~ 427 (595)
T 2yl4_A 348 HFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 427 (595)
T ss_dssp EEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSC
T ss_pred EEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCC
Confidence 9999753 346999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHhhcCCCC-C---CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEE
Q 011713 318 TLFRGSVRTNLDPLG-M---YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILIL 393 (479)
Q Consensus 318 ~lF~gTi~eNi~~~~-~---~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliL 393 (479)
.+|++|++|||.++. . .++++++++++.++++++++++|+|+||++||+|.+||||||||++||||++++|+||||
T Consensus 428 ~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illl 507 (595)
T 2yl4_A 428 ILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLL 507 (595)
T ss_dssp CCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred cccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999998653 2 688999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhc-cCchHHHHHHHHHHhh
Q 011713 394 DEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMK-TNSAFSKLVAEYRSSY 472 (479)
Q Consensus 394 DE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~-~~g~y~~l~~~~~~~~ 472 (479)
|||||+||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|+|++.|+|+||++ .++.|+++++.|....
T Consensus 508 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~q~~~~ 587 (595)
T 2yl4_A 508 DEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQSFIS 587 (595)
T ss_dssp ECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC------C-------------
T ss_pred ECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCChHHHHHHHHhhccc
Confidence 999999999999999999999878999999999999999999999999999999999999998 5899999998875543
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.9e-86 Score=761.81 Aligned_cols=467 Identities=22% Similarity=0.300 Sum_probs=398.2
Q ss_pred CCccccCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 1 MLFFDSTPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAREL 80 (479)
Q Consensus 1 ~~~f~~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
++||+++++|++++|+++|++.++..++..+..++..++.+++.+++++.++|+++++++++++++.++..++.+..++.
T Consensus 156 ~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~ 235 (1284)
T 3g5u_A 156 IGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSF 235 (1284)
T ss_dssp THHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999888777777776666676666666
Q ss_pred HHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 011713 81 MRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI-- 158 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 158 (479)
.+...+..++.++.+.|+++|+++||+|++|+++.++|.+..+...+...+.............++..+...++.++.
T Consensus 236 ~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 315 (1284)
T 3g5u_A 236 TDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTS 315 (1284)
T ss_dssp HHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677778889999999999999999999999999999888877766554443333333333333333222222221
Q ss_pred HHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeE
Q 011713 159 VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 238 (479)
Q Consensus 159 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~v 238 (479)
....+.+++|.+.+++.+......++..+...+..++.+..+++|++++++.+++.+........ ..+..+.|+|+||
T Consensus 316 lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~--~~~~~g~i~~~~v 393 (1284)
T 3g5u_A 316 LVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHK--PDNIQGNLEFKNI 393 (1284)
T ss_dssp HHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCC--CTTCCCCEEEEEE
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCC--CCCCCCeEEEEEE
Confidence 12336677776666655555666677778888889999999999999999876543221111111 1123578999999
Q ss_pred EEEeCCC-CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCC
Q 011713 239 KVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (479)
Q Consensus 239 sf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~ 317 (479)
+|+|++. .+++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++++++|++|+||||+|
T Consensus 394 ~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 473 (1284)
T 3g5u_A 394 HFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEP 473 (1284)
T ss_dssp EECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSC
T ss_pred EEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCC
Confidence 9999753 346999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCC
Q 011713 318 TLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEA 396 (479)
Q Consensus 318 ~lF~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~ 396 (479)
+||++||+|||.++. ++++++++++++.+++++++.++|+||||.+||+|.+||||||||||||||++++|+|||||||
T Consensus 474 ~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEp 553 (1284)
T 3g5u_A 474 VLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEA 553 (1284)
T ss_dssp CCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred ccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999999999998754 6889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHHH
Q 011713 397 TASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEYR 469 (479)
Q Consensus 397 TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~~ 469 (479)
||+||+++|+.+++.+++..+++|+|+||||++++++||+|+||++|+|+|+|+|+||++++|.|++++..+.
T Consensus 554 ts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 626 (1284)
T 3g5u_A 554 TSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQT 626 (1284)
T ss_dssp TCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHhh
Confidence 9999999999999999998889999999999999999999999999999999999999999999999987653
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=8e-82 Score=725.96 Aligned_cols=470 Identities=20% Similarity=0.283 Sum_probs=378.9
Q ss_pred CCccc--cCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 1 MLFFD--STPVGRIFTRVSSDMSTMDFDLPSAISLSAAATTDVFIIIAVMASVTWPVLIVAIPTVIVAKYIQGYYLSSAR 78 (479)
Q Consensus 1 ~~~f~--~~~~G~l~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 78 (479)
++||+ ++++|++++|+++|++.++..++..+..++..++.+++.+++++.++|+++++++.++++..++.....+..+
T Consensus 797 ~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~ 876 (1284)
T 3g5u_A 797 VSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLS 876 (1284)
T ss_dssp SHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888 4799999999999999999999999999999999999999999999999887765555554443333333333
Q ss_pred HHHHHhhhcccchHHHHHHHHchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011713 79 ELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIETLQNLIILTAALLI 158 (479)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (479)
..........+.....+.|+++|+++||+|+.|+.+.++|.+..+...+...+..............+..+...++.++.
T Consensus 877 ~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 956 (1284)
T 3g5u_A 877 GQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFG 956 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333445566789999999999999999999999998887776555444333333222222222222222222221
Q ss_pred HH--hCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEE
Q 011713 159 VL--LPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELE 236 (479)
Q Consensus 159 ~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~ 236 (479)
.. ..+.++.+.+..++.+......++..+......+.++..+++|+.++++.+++........ ...++..+.|+|+
T Consensus 957 ~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~--~~~~~~~g~i~~~ 1034 (1284)
T 3g5u_A 957 AYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQG--LKPNMLEGNVQFS 1034 (1284)
T ss_dssp HCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSC--CCTTTTSCCEEEE
T ss_pred HHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccc--ccccCCCCcEEEE
Confidence 11 1255666666555555555555555565556667788999999999998765532211111 1112345789999
Q ss_pred eEEEEeCCC-CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcC
Q 011713 237 DLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ 315 (479)
Q Consensus 237 ~vsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q 315 (479)
||+|+|++. ..++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++++++|++|+||||
T Consensus 1035 ~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 1114 (1284)
T 3g5u_A 1035 GVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQ 1114 (1284)
T ss_dssp EEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEES
T ss_pred EEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECC
Confidence 999999753 2469999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccHHhhcCCCC---CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEE
Q 011713 316 EPTLFRGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILI 392 (479)
Q Consensus 316 ~~~lF~gTi~eNi~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~ili 392 (479)
||.+|++||+|||.++. ..++++++++++.+++++++.++|+||||++||+|.+||||||||+||||||+++|+|||
T Consensus 1115 ~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLi 1194 (1284)
T 3g5u_A 1115 EPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILL 1194 (1284)
T ss_dssp SCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEE
T ss_pred CCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999998753 468999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHHHHhh
Q 011713 393 LDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEYRSSY 472 (479)
Q Consensus 393 LDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~~~~~ 472 (479)
||||||+||+++++.|++.|++..+++|+|+||||+++++.||||+||++|+|+|.|+|+||++++|.|++||+.|....
T Consensus 1195 LDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~~g~y~~l~~~q~~~~ 1274 (1284)
T 3g5u_A 1195 LDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAK 1274 (1284)
T ss_dssp EESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHSCSHHHHHHHHHC---
T ss_pred EeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHHhhcc
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999876544
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=6e-75 Score=569.88 Aligned_cols=279 Identities=24% Similarity=0.413 Sum_probs=249.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCCCCccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCC
Q 011713 190 WYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRT 269 (479)
Q Consensus 190 ~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~s 269 (479)
+...++.+.++++|++++++.+++.... .. .....+..+.|+|+||+|+|++. +++|+||||+|++||++||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~-~~~~~~~~~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~s 89 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDL--PG-AGPLRFQKGRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPS 89 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCC--TT-CBCCCCSSCCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSS
T ss_pred cchhHHHHHHHHHHHHHHHhCCcccccc--cc-ccccCCCCCeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCC
Confidence 4456778889999999999754432211 00 11111234679999999999754 46999999999999999999999
Q ss_pred CCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHccH
Q 011713 270 GSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQL 348 (479)
Q Consensus 270 GsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~-~~~~~~i~~a~~~a~l 348 (479)
|||||||+++|+|+|+|++|+|++||.|+.+++..++|++|+||||+|++|++||+|||.++. ..++++++++++.+++
T Consensus 90 GsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l 169 (306)
T 3nh6_A 90 GAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGI 169 (306)
T ss_dssp CHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTC
T ss_pred CchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999999999999998764 5788999999999999
Q ss_pred HHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCc
Q 011713 349 KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRV 428 (479)
Q Consensus 349 ~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl 428 (479)
++++..+|+||+|.+|++|.+||||||||++|||||+++|+|||||||||+||+.++..|++.|+++.+++|+|+||||+
T Consensus 170 ~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l 249 (306)
T 3nh6_A 170 HDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRL 249 (306)
T ss_dssp HHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSH
T ss_pred HHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred hhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHHHHhh
Q 011713 429 PTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEYRSSY 472 (479)
Q Consensus 429 ~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~~~~~ 472 (479)
+++..||+|+||++|+|++.|+|+||++.++.|+++|+.+....
T Consensus 250 ~~~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q~~~~ 293 (306)
T 3nh6_A 250 STVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQGQE 293 (306)
T ss_dssp HHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHHCC-
T ss_pred HHHHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999876543
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.5e-62 Score=470.08 Aligned_cols=239 Identities=32% Similarity=0.534 Sum_probs=224.2
Q ss_pred CccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhcc
Q 011713 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (479)
Q Consensus 230 ~~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~ 309 (479)
..+|+++||+|+|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++...+|++
T Consensus 5 ~~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 5 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp CEEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred cCceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 34799999999995323469999999999999999999999999999999999999999999999999999998899999
Q ss_pred ceEEcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 011713 310 LSIIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (479)
Q Consensus 310 i~~V~Q~~~lF~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p 388 (479)
|+||||+|.+|++|++||+.++. ..++++++++++.+++.+++.++|.|+++.+++.+.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998753 45678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhcc-CchHHHHHHH
Q 011713 389 RILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKT-NSAFSKLVAE 467 (479)
Q Consensus 389 ~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~-~g~y~~l~~~ 467 (479)
++||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++++. ++.|.+++..
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~ 244 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHh
Confidence 999999999999999999999999988678999999999999988999999999999999999999987 8899988875
Q ss_pred H
Q 011713 468 Y 468 (479)
Q Consensus 468 ~ 468 (479)
+
T Consensus 245 ~ 245 (247)
T 2ff7_A 245 Q 245 (247)
T ss_dssp H
T ss_pred h
Confidence 4
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=6.1e-61 Score=462.39 Aligned_cols=238 Identities=32% Similarity=0.506 Sum_probs=223.0
Q ss_pred ccEEEEeEEEEeCCCC-CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhcc
Q 011713 231 GRIELEDLKVRYRPNT-PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~ 309 (479)
+.|+++||+|+|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++| +|+|.+||.++.+++...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 3599999999997532 4699999999999999999999999999999999999987 8999999999998888899999
Q ss_pred ceEEcCCCccccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCC
Q 011713 310 LSIIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 388 (479)
Q Consensus 310 i~~V~Q~~~lF~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p 388 (479)
|+||||+|.+|+.|++|||.++. ..+++++.++++.+++.+++..+|+|++|.+++.+.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999998643 35678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHH
Q 011713 389 RILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEY 468 (479)
Q Consensus 389 ~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~ 468 (479)
+|||||||||+||+.++..+.+.|+++.+++|+|+|||+++.++.||+|++|++|+|++.|+++++++.++.|.+++..+
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 254 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNMQ 254 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHhh
Confidence 99999999999999999999999999888899999999999998999999999999999999999999889999998766
Q ss_pred H
Q 011713 469 R 469 (479)
Q Consensus 469 ~ 469 (479)
.
T Consensus 255 ~ 255 (260)
T 2ghi_A 255 S 255 (260)
T ss_dssp H
T ss_pred h
Confidence 4
No 14
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-61 Score=462.52 Aligned_cols=235 Identities=29% Similarity=0.558 Sum_probs=220.2
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++||+|+|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++|+|
T Consensus 2 l~~~~l~~~y~~~-~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEEeCCC-CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 7899999999533 459999999999999999999999999999999999999999999999999998887888999999
Q ss_pred EcCCCccccccHHhhcCCC--CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCE
Q 011713 313 IPQEPTLFRGSVRTNLDPL--GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 390 (479)
Q Consensus 313 V~Q~~~lF~gTi~eNi~~~--~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~i 390 (479)
|||+|.+|++|++|||.++ ...++++++++++.+++.+++.++|.|+++.+++.+.+||||||||++|||||+++|++
T Consensus 81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999875 24567889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHH
Q 011713 391 LILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEY 468 (479)
Q Consensus 391 liLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~ 468 (479)
||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.++.||+|++|++|++++.|+++++++..+.|++++..+
T Consensus 161 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 238 (243)
T 1mv5_A 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238 (243)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHCC
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHHHhh
Confidence 999999999999999999999988767899999999999998899999999999999999999998888888887643
No 15
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2e-60 Score=461.35 Aligned_cols=241 Identities=29% Similarity=0.448 Sum_probs=220.6
Q ss_pred ccEEEEeEEEEeCC-CCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhcc
Q 011713 231 GRIELEDLKVRYRP-NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~ 309 (479)
+.|+++||+|+|++ ...++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999964 22469999999999999999999999999999999999999999999999999998888889999
Q ss_pred ceEEcCCCccccccHHhhcCCCC-CCCH-HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcC
Q 011713 310 LSIIPQEPTLFRGSVRTNLDPLG-MYSD-NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (479)
Q Consensus 310 i~~V~Q~~~lF~gTi~eNi~~~~-~~~~-~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~ 387 (479)
|+||||+|.+|+.|++|||.++. ..++ +++.++++.+++.++++.+|+|+++.+++.+.+||||||||++|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998643 3333 678888899999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHH
Q 011713 388 NRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLV 465 (479)
Q Consensus 388 p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~ 465 (479)
|+|||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|+|++.|+++++++..+.|.+++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 254 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHHH
Confidence 999999999999999999999999998754 899999999999998899999999999999999999999889999998
Q ss_pred HHHHHh
Q 011713 466 AEYRSS 471 (479)
Q Consensus 466 ~~~~~~ 471 (479)
+.+...
T Consensus 255 ~~~~~~ 260 (271)
T 2ixe_A 255 EALAAP 260 (271)
T ss_dssp HC----
T ss_pred HHhhcc
Confidence 766443
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-59 Score=471.94 Aligned_cols=231 Identities=36% Similarity=0.662 Sum_probs=218.9
Q ss_pred CCCCccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHH
Q 011713 227 WPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL 306 (479)
Q Consensus 227 ~~~~~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~l 306 (479)
|+..+.|+++||+|+|++...++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|++||.++.+++...+
T Consensus 14 ~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~ 92 (390)
T 3gd7_A 14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQW 92 (390)
T ss_dssp SSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHH
T ss_pred CCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHH
Confidence 44556899999999997545569999999999999999999999999999999999998 99999999999999999999
Q ss_pred hccceEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc
Q 011713 307 RTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (479)
Q Consensus 307 r~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~ 386 (479)
|++|+||||++.+|+.|++||+.+.....+++++++++.+++.+++.++|.+|+|.++++|.+||||||||+||||||++
T Consensus 93 rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 93 RKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp HHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred hCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998655667899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccC
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
+|++||||||||+||+.+...+++.|++..+++|+|+|||+++.+..||||+||++|+|++.|+++|+++..
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p 244 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP 244 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999887789999999999999999999999999999999999999743
No 17
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=5.8e-58 Score=435.84 Aligned_cols=226 Identities=24% Similarity=0.420 Sum_probs=207.5
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++||+|+|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|+
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 3899999999964345699999999999999999999999999999999999999999999999 499
Q ss_pred EEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEE
Q 011713 312 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 391 (479)
Q Consensus 312 ~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~il 391 (479)
||||+|.+|+.|++|||.++...++++..++++.+++.+++..+|.|++|.+++.+.+||||||||++|||||+++|++|
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll 149 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 149 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred EEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999865444456677888889998899999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHH---HHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHH
Q 011713 392 ILDEATASIDSATDAILQRIIR---EEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEY 468 (479)
Q Consensus 392 iLDE~TSaLD~~te~~i~~~l~---~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~ 468 (479)
|||||||+||+.++..+.+.+. +..+++|+|+|||+++.+..||+|++|++|+|++.|+++++++.++.|.+++..|
T Consensus 150 lLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 229 (237)
T 2cbz_A 150 LFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTY 229 (237)
T ss_dssp EEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHT
T ss_pred EEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHHHHH
Confidence 9999999999999999999984 4446899999999999998899999999999999999999999999999998876
Q ss_pred HH
Q 011713 469 RS 470 (479)
Q Consensus 469 ~~ 470 (479)
..
T Consensus 230 ~~ 231 (237)
T 2cbz_A 230 AS 231 (237)
T ss_dssp CC
T ss_pred Hh
Confidence 54
No 18
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.6e-57 Score=430.81 Aligned_cols=222 Identities=23% Similarity=0.362 Sum_probs=201.5
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccc
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i 310 (479)
+.|+++||+|+|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 35999999999974445699999999999999999999999999999999999999999999998 59
Q ss_pred eEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCE
Q 011713 311 SIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 390 (479)
Q Consensus 311 ~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~i 390 (479)
+||||+|.+|++|++||+.++....+.+..++++.+++.+++..+|.+++|.+++.+.+||||||||++|||||+++|++
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 151 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 151 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999986544455567778888999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHH-HHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHH
Q 011713 391 LILDEATASIDSATDAILQRII-REEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLV 465 (479)
Q Consensus 391 liLDE~TSaLD~~te~~i~~~l-~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~ 465 (479)
||||||||+||+.+++.+.+.+ ++..+++|+|++||+++.++.||+|++|++|++++.|+++++++.++.|.+++
T Consensus 152 llLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 227 (229)
T 2pze_A 152 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227 (229)
T ss_dssp EEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHHHHH
T ss_pred EEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHh
Confidence 9999999999999999999874 55556899999999999988899999999999999999999998777776654
No 19
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.7e-55 Score=424.11 Aligned_cols=219 Identities=26% Similarity=0.425 Sum_probs=187.7
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecC--CCCHHHHhcc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDLRTK 309 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~--~~~~~~lr~~ 309 (479)
-|+++||+|+|++. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++. +.+...+|++
T Consensus 7 ~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 7 ILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred EEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 48999999999754 35999999999999999999999999999999999999999999999999994 3345678999
Q ss_pred ceEEcCCC--ccccccHHhhcCCC---CCCCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 011713 310 LSIIPQEP--TLFRGSVRTNLDPL---GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 380 (479)
Q Consensus 310 i~~V~Q~~--~lF~gTi~eNi~~~---~~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlai 380 (479)
||||||+| .+|..|++||+.++ ...+. +++.++++.+++.++.. .....||||||||++|
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv~i 154 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVAI 154 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CCcccCCHHHHHHHHH
Confidence 99999998 57888999999642 12333 34666777776654332 2336799999999999
Q ss_pred HHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhcc
Q 011713 381 GRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 381 ARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
||||+.+|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. ||||++|++|+|++.|++++++..
T Consensus 155 AraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 155 AGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998875 38999999999999865 999999999999999999999876
Q ss_pred CchHH
Q 011713 458 NSAFS 462 (479)
Q Consensus 458 ~g~y~ 462 (479)
...+.
T Consensus 235 ~~~~~ 239 (275)
T 3gfo_A 235 KEVIR 239 (275)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 20
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.2e-54 Score=412.49 Aligned_cols=213 Identities=23% Similarity=0.380 Sum_probs=180.3
Q ss_pred EEEEeEEEEeCCCC--CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHH----
Q 011713 233 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL---- 306 (479)
Q Consensus 233 I~~~~vsf~Y~~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~l---- 306 (479)
|+++||+|+|+... .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996432 359999999999999999999999999999999999999999999999999999988764
Q ss_pred hccceEEcCCCccccc-cHHhhcCCC------CCCCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHH
Q 011713 307 RTKLSIIPQEPTLFRG-SVRTNLDPL------GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (479)
Q Consensus 307 r~~i~~V~Q~~~lF~g-Ti~eNi~~~------~~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQr 375 (479)
|++|+||||+|.+|.. |++||+.+. ...+. +++.++++.+++.+.. .......||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhCCHHHH
Confidence 4579999999999987 999999531 12222 3445555555543211 1234567999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhh
Q 011713 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSN 453 (479)
Q Consensus 376 QRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~e 453 (479)
||++|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++..+.||+|++|++|+|++.|+.++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 999999999999999999999999999999999999988753 899999999999888899999999999999998877
Q ss_pred hh
Q 011713 454 LM 455 (479)
Q Consensus 454 Ll 455 (479)
+.
T Consensus 232 ~~ 233 (235)
T 3tif_A 232 FD 233 (235)
T ss_dssp --
T ss_pred hc
Confidence 53
No 21
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.7e-54 Score=431.91 Aligned_cols=216 Identities=26% Similarity=0.425 Sum_probs=189.4
Q ss_pred ccEEEEeEEEEeCCC--CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHH---
Q 011713 231 GRIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD--- 305 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~--- 305 (479)
.-|+++||+++|+.. ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+..++..+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 359999999999643 235899999999999999999999999999999999999999999999999999998765
Q ss_pred HhccceEEcCCCccccc-cHHhhcCCC---CCCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHH
Q 011713 306 LRTKLSIIPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 306 lr~~i~~V~Q~~~lF~g-Ti~eNi~~~---~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
+|++||||||++.+|.. |++||+.+. ...+ .+++.++++.+++.++..+.| .+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~-----------~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----------SNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCT-----------TTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHH
Confidence 47899999999999876 999999642 1223 345667777777665444333 6899999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhh
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eL 454 (479)
++|||||+.+|++||||||||+||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++|+|++.|+++++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999998864 38999999999999865 999999999999999999999
Q ss_pred hcc
Q 011713 455 MKT 457 (479)
Q Consensus 455 l~~ 457 (479)
+..
T Consensus 252 ~~~ 254 (366)
T 3tui_C 252 FSH 254 (366)
T ss_dssp HSS
T ss_pred HhC
Confidence 874
No 22
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2e-53 Score=405.44 Aligned_cols=218 Identities=25% Similarity=0.405 Sum_probs=185.5
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHH-hccc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKL 310 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~l-r~~i 310 (479)
-|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ |+.|
T Consensus 6 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred eEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 469999999999999999999999999999999999999999999999999998887765 4569
Q ss_pred eEEcCCCccccc-cHHhhcCCCC--CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcC
Q 011713 311 SIIPQEPTLFRG-SVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (479)
Q Consensus 311 ~~V~Q~~~lF~g-Ti~eNi~~~~--~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~ 387 (479)
+||||++.+|.+ |++||+.++. ..+.++..+.+ .+.++.++ |++...+....+||||||||++|||||+++
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 157 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMSR 157 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred EEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999999987 9999997532 12222322222 22334443 344455566788999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhhcc
Q 011713 388 NRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 388 p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
|++||||||||+||+.+.+.+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|+++++++.
T Consensus 158 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 99999999999999999999999998875 589999999999876 56999999999999999999998754
No 23
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=8.4e-54 Score=417.74 Aligned_cols=216 Identities=23% Similarity=0.372 Sum_probs=182.6
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccc
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i 310 (479)
+.|+++||+|.| .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 39 ~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i 101 (290)
T 2bbs_A 39 DSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 101 (290)
T ss_dssp -----------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CE
T ss_pred ceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EE
Confidence 469999999964 3499999999999999999999999999999999999999999999998 59
Q ss_pred eEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCE
Q 011713 311 SIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 390 (479)
Q Consensus 311 ~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~i 390 (479)
+||||++.+|++|++||+. +....+.++.++++.+++.+++..+|.+++|.+++.+.+||||||||++|||||+++|++
T Consensus 102 ~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l 180 (290)
T 2bbs_A 102 SFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180 (290)
T ss_dssp EEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCE
Confidence 9999999999999999997 433345566778888999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHH-HHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHH
Q 011713 391 LILDEATASIDSATDAILQRII-REEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKL 464 (479)
Q Consensus 391 liLDE~TSaLD~~te~~i~~~l-~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l 464 (479)
||||||||+||+.++..+.+.+ ++..+++|+|+|||+++.+..||+|++|++|++++.|+++++++..+.|.+.
T Consensus 181 llLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 255 (290)
T 2bbs_A 181 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSK 255 (290)
T ss_dssp EEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHHCHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhhcHHHHHH
Confidence 9999999999999999999864 4555689999999999999889999999999999999999998755555544
No 24
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3.2e-53 Score=409.46 Aligned_cols=213 Identities=23% Similarity=0.322 Sum_probs=188.7
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
-|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+++...+++.++
T Consensus 11 ~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 11 LLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred eEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 5999999999964 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcc-ccccHHhhcCCCC-----CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhh
Q 011713 312 IIPQEPTL-FRGSVRTNLDPLG-----MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 385 (479)
Q Consensus 312 ~V~Q~~~l-F~gTi~eNi~~~~-----~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll 385 (479)
||+|++.+ |..|++||+.++. ....+++.++++..++.++..+ . ...||||||||++|||||+
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LSgGq~QRv~iAraL~ 157 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR-------D----YRVLSGGEQQRVQLARVLA 157 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTS-------B----GGGCCHHHHHHHHHHHHHH
T ss_pred EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcC-------C----cccCCHHHHHHHHHHHHHh
Confidence 99999987 6679999996531 2235667778888776543222 2 2479999999999999999
Q ss_pred c------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhc
Q 011713 386 K------RNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 386 ~------~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
+ +|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||||++|++|+|++.|++++++.
T Consensus 158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 9 9999999999999999999999999988743 579999999999986 599999999999999999999986
Q ss_pred c
Q 011713 457 T 457 (479)
Q Consensus 457 ~ 457 (479)
.
T Consensus 238 ~ 238 (266)
T 4g1u_C 238 A 238 (266)
T ss_dssp H
T ss_pred c
Confidence 4
No 25
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=4.9e-53 Score=406.95 Aligned_cols=214 Identities=26% Similarity=0.431 Sum_probs=185.7
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecC--CCCHHHHhcc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDLRTK 309 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~--~~~~~~lr~~ 309 (479)
-|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|++
T Consensus 24 ~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 24 MIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp SEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 4999999999953 45999999999999999999999999999999999999999999999999985 3455678889
Q ss_pred ceEEcCCCccccc-cHHhhcCCC----CCCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 011713 310 LSIIPQEPTLFRG-SVRTNLDPL----GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 380 (479)
Q Consensus 310 i~~V~Q~~~lF~g-Ti~eNi~~~----~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlai 380 (479)
|+||||++.+|.. |++||+.++ ...+ ++++.++++..++.++. .....+||||||||++|
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGqkQRv~l 170 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKA-----------HAYPDSLSGGQAQRVAI 170 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGT-----------TSCGGGSCHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCChhhCCHHHHHHHHH
Confidence 9999999999987 999999652 1222 24566667776665432 23346799999999999
Q ss_pred HHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhccC
Q 011713 381 GRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 381 ARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
||||+.+|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.|+++++++..
T Consensus 171 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
T 2olj_A 171 ARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250 (263)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999999999998864 4899999999999986 59999999999999999999998643
No 26
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-52 Score=401.93 Aligned_cols=212 Identities=25% Similarity=0.411 Sum_probs=186.3
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccc
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i 310 (479)
+.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+ ....+|++|
T Consensus 14 ~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i 90 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 90 (256)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred CeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcE
Confidence 46999999999953 469999999999999999999999999999999999999999999999999976 566788999
Q ss_pred eEEcCCCccccc-cHHhhcCCCC---CCCH----HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 011713 311 SIIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (479)
Q Consensus 311 ~~V~Q~~~lF~g-Ti~eNi~~~~---~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiAR 382 (479)
+||||++.+|.+ |++||+.+.. ..+. +++.++++.+++.++..+ ...+||||||||++|||
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~qRv~lAr 159 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD-----------RVSTYSKGMVRKLLIAR 159 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGS-----------BGGGCCHHHHHHHHHHH
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcC-----------ChhhCCHHHHHHHHHHH
Confidence 999999999887 9999996421 2222 456677777776544332 23579999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhc
Q 011713 383 VLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 383 All~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
||+++|++||||||||+||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 160 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999998874 48999999999999876 99999999999999999999975
No 27
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-52 Score=405.15 Aligned_cols=211 Identities=28% Similarity=0.379 Sum_probs=187.5
Q ss_pred EEEEeEEEEeCCCC---CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhcc
Q 011713 233 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (479)
Q Consensus 233 I~~~~vsf~Y~~~~---~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~ 309 (479)
|+++||+|+|+.+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 79999999996222 4699999999999999999999999999999999999999999999999998642 67889
Q ss_pred ceEEcCCC--ccccccHHhhcCCCC------CCCHHHHHHHHHHccHH--HHHHhCCccccccccCCCCCCChhHHHHHH
Q 011713 310 LSIIPQEP--TLFRGSVRTNLDPLG------MYSDNEIWEAMEKCQLK--ATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 310 i~~V~Q~~--~lF~gTi~eNi~~~~------~~~~~~i~~a~~~a~l~--~~i~~lp~G~~T~vge~G~~LSgGQrQRla 379 (479)
|+||||+| .+|..|++||+.++. ...++++.++++.+++. ++..+.| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999996 567889999997531 12256788899999987 7665554 579999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhhcc
Q 011713 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 380 iARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
|||||+++|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998874 48999999999999875 999999999999999999999864
No 28
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=7.2e-53 Score=397.50 Aligned_cols=207 Identities=24% Similarity=0.288 Sum_probs=178.1
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHH---Hh-
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LR- 307 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~---lr- 307 (479)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 4 ILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred EEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 3899999999964 46999999999999999999999999999999999999999999999999998887653 34
Q ss_pred ccceEEcCCCccccc-cHHhhcCCC---CCCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHH
Q 011713 308 TKLSIIPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 308 ~~i~~V~Q~~~lF~g-Ti~eNi~~~---~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRla 379 (479)
++|+||||++.+|.. |++||+.+. ...+ ++++.++++..++.++. .....+||||||||++
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv~ 150 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKL-----------SRKPYELSGGEQQRVA 150 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCT-----------TCCGGGSCHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHH
Confidence 789999999999875 999999642 1122 23455666666554332 2334689999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcCCEEEEEeCCEEEEecCh
Q 011713 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLP 451 (479)
Q Consensus 380 iARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~ 451 (479)
|||||+.+|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.++.||+|++|++|++++.|+.
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 151 IARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEeee
Confidence 9999999999999999999999999999999998864 48999999999998888999999999999999873
No 29
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=3.6e-52 Score=401.61 Aligned_cols=214 Identities=25% Similarity=0.400 Sum_probs=186.5
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCC----------C
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS----------M 301 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~----------~ 301 (479)
-|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|+|+++|++|+|.++|.++.. +
T Consensus 6 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 3999999999953 459999999999999999999999999999999999999999999999999862 4
Q ss_pred CH---HHHhccceEEcCCCccccc-cHHhhcCCC----CCCC----HHHHHHHHHHccHHHH-HHhCCccccccccCCCC
Q 011713 302 GL---KDLRTKLSIIPQEPTLFRG-SVRTNLDPL----GMYS----DNEIWEAMEKCQLKAT-ISRLPMLLDSSVSDEGE 368 (479)
Q Consensus 302 ~~---~~lr~~i~~V~Q~~~lF~g-Ti~eNi~~~----~~~~----~~~i~~a~~~a~l~~~-i~~lp~G~~T~vge~G~ 368 (479)
+. ..+|++|+||||++.+|.. |++||+.++ ...+ ++++.++++..++.++ ..+.| .
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~ 152 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP-----------V 152 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------G
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCc-----------c
Confidence 43 3568899999999999887 999999652 1222 3457778888887766 44333 5
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhh-cCCEEEEEeCCEEE
Q 011713 369 NWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGELV 446 (479)
Q Consensus 369 ~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Iv 446 (479)
+||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+++
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 799999999999999999999999999999999999999999998864 4899999999999986 59999999999999
Q ss_pred EecChhhhhccC
Q 011713 447 EYDLPSNLMKTN 458 (479)
Q Consensus 447 e~G~~~eLl~~~ 458 (479)
+.|+++++++..
T Consensus 233 ~~g~~~~~~~~~ 244 (262)
T 1b0u_A 233 EEGDPEQVFGNP 244 (262)
T ss_dssp EEECHHHHHHSC
T ss_pred EeCCHHHHHhCc
Confidence 999999998643
No 30
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.5e-52 Score=415.11 Aligned_cols=214 Identities=23% Similarity=0.350 Sum_probs=184.4
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCC--CCHHHHhcc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS--MGLKDLRTK 309 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~--~~~~~lr~~ 309 (479)
.|+++||+++|++ .++|+||||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+ ......+++
T Consensus 4 ~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 4 ALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 4899999999953 459999999999999999999999999999999999999999999999999832 223345788
Q ss_pred ceEEcCCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 011713 310 LSIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (479)
Q Consensus 310 i~~V~Q~~~lF~g-Ti~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiA 381 (479)
||||+|++.+|.. |++|||.++. ..+ ++++.++++.+++.++..+.| ..||||||||++||
T Consensus 82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRValA 150 (359)
T 3fvq_A 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP-----------HELSGGQQQRAALA 150 (359)
T ss_dssp CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG-----------GGSCHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999999999976 9999997642 111 346777888887766554444 57999999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhccC
Q 011713 382 RVLLKRNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 382 RAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
|||+.+|++||||||||+||+.+...+.+.+.+.. .++|+|+|||+++.+. .||||+||++|+|++.|+++|++...
T Consensus 151 rAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 151 RALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence 99999999999999999999999999988776543 4899999999999875 59999999999999999999998743
No 31
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.4e-52 Score=402.13 Aligned_cols=210 Identities=20% Similarity=0.280 Sum_probs=179.9
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHH-HHhccc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKL 310 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~-~lr~~i 310 (479)
-|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+.. .+|+.|
T Consensus 7 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 7 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999963 4599999999999999999999999999999999999999999999999999887653 467889
Q ss_pred eEEcCCCcccc-ccHHhhcCCCC-C---------------CC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCC
Q 011713 311 SIIPQEPTLFR-GSVRTNLDPLG-M---------------YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGEN 369 (479)
Q Consensus 311 ~~V~Q~~~lF~-gTi~eNi~~~~-~---------------~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~ 369 (479)
+||||++.+|. .|++||+.+.. . .+ .+++.++++..+ ++........+
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~ 153 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK-----------LSHLYDRKAGE 153 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTT-----------CGGGTTSBGGG
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcC-----------CchhhCCCchh
Confidence 99999999986 59999996531 1 11 123344444443 44344455578
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhh-cCCEEEEEeCCEEEE
Q 011713 370 WSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTIT-DSDMVMVLSYGELVE 447 (479)
Q Consensus 370 LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive 447 (479)
||||||||++|||||+++|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++
T Consensus 154 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998864 3899999999999875 599999999999999
Q ss_pred ecChhhh
Q 011713 448 YDLPSNL 454 (479)
Q Consensus 448 ~G~~~eL 454 (479)
.|+++++
T Consensus 234 ~g~~~~~ 240 (257)
T 1g6h_A 234 EGRGEEE 240 (257)
T ss_dssp EEESHHH
T ss_pred EeCHHHh
Confidence 9999993
No 32
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3.9e-52 Score=417.40 Aligned_cols=211 Identities=24% Similarity=0.338 Sum_probs=186.6
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++||+++|++ ..+|+||||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++...++. ++.|+
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 78 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEE
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEE
Confidence 3899999999963 4599999999999999999999999999999999999999999999999999988765 46799
Q ss_pred EEcCCCccccc-cHHhhcCCC---CCCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 011713 312 IIPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~---~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA 383 (479)
||+|++.+|.. |++|||.++ ...+ ++++.++++.+++.++..+.| ..||||||||++||||
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----------~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 147 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG-----------GGSCHHHHHHHHHHHH
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hHCCHHHHHHHHHHHH
Confidence 99999999976 999999753 1233 345677788877765544444 5799999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhcc
Q 011713 384 LLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 384 ll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~ 457 (479)
|+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||||+||++|+|++.|+++|++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~ 224 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 9999999999999999999999999999988743 899999999999875 5999999999999999999999874
No 33
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=4.3e-52 Score=395.55 Aligned_cols=208 Identities=24% Similarity=0.343 Sum_probs=180.4
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++||+++|++ +|+|+||++++ |.+||+||||||||||+++|+|+++|++|+|.++|.++.+.+ .+|++|+|
T Consensus 2 l~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (240)
T 2onk_A 2 FLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGF 74 (240)
T ss_dssp CEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBC
T ss_pred EEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEE
Confidence 689999999952 69999999999 999999999999999999999999999999999999997643 35788999
Q ss_pred EcCCCccccc-cHHhhcCCCCCC-----CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc
Q 011713 313 IPQEPTLFRG-SVRTNLDPLGMY-----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (479)
Q Consensus 313 V~Q~~~lF~g-Ti~eNi~~~~~~-----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~ 386 (479)
|||++.+|.. |++||+.+.... .++++.++++..++.++..+ ...+||||||||++|||||++
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDR-----------KPARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTC-----------CGGGSCHHHHHHHHHHHHHTT
T ss_pred EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcC-----------ChhhCCHHHHHHHHHHHHHHc
Confidence 9999999987 999999764221 13456666776666443322 235799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhccC
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++++..
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 9999999999999999999999999988743 899999999999764 59999999999999999999998654
No 34
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=6.2e-52 Score=396.36 Aligned_cols=206 Identities=19% Similarity=0.271 Sum_probs=186.2
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++||+|+ ++|+|+||+|++||+++|+||||||||||+++|+|+++|+ |+|.++|.++.+++...+|++++|
T Consensus 5 l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~ 77 (249)
T 2qi9_C 5 MQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY 77 (249)
T ss_dssp EEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEE
Confidence 899999986 4899999999999999999999999999999999999999 999999999998888899999999
Q ss_pred EcCCCccccc-cHHhhcCCCC--CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCC
Q 011713 313 IPQEPTLFRG-SVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389 (479)
Q Consensus 313 V~Q~~~lF~g-Ti~eNi~~~~--~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~ 389 (479)
|||++.+|.+ |++||+.++. ..+++++.++++..++.++.. .....||||||||++|||||+++|+
T Consensus 78 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~lAraL~~~p~ 146 (249)
T 2qi9_C 78 LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----------RSTNQLSGGEWQRVRLAAVVLQITP 146 (249)
T ss_dssp ECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTT-----------SBGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred ECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999998876 9999997642 124677888888888765432 2346899999999999999999999
Q ss_pred -------EEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhhc
Q 011713 390 -------ILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 390 -------iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
+||||||||+||+.+...+.+.|+++. +++|+|++||+++.+ ..||++++|++|++++.|+++++++
T Consensus 147 ~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 147 QANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred cCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999998874 489999999999998 5699999999999999999999976
No 35
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=3.4e-52 Score=404.78 Aligned_cols=213 Identities=20% Similarity=0.272 Sum_probs=183.4
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecC--CCCHHHHhcc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDLRTK 309 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~--~~~~~~lr~~ 309 (479)
-|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|++
T Consensus 21 ~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 98 (279)
T 2ihy_A 21 LIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH 98 (279)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred eEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence 5999999999964 45999999999999999999999999999999999999999999999999998 7788889999
Q ss_pred ceEEcCCCcc-ccc--cHHhhcCCCC--------CCC---HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHH
Q 011713 310 LSIIPQEPTL-FRG--SVRTNLDPLG--------MYS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 375 (479)
Q Consensus 310 i~~V~Q~~~l-F~g--Ti~eNi~~~~--------~~~---~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQr 375 (479)
|+||||++.+ |.. |++||+.++. ..+ .+++.++++..++.++ ......+||||||
T Consensus 99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqk 167 (279)
T 2ihy_A 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAK-----------AQQYIGYLSTGEK 167 (279)
T ss_dssp EEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGG-----------TTSBGGGSCHHHH
T ss_pred EEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHH
Confidence 9999999875 555 9999997531 112 2345566666665433 2233457999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC-CcEE--EEEccCchhhh-cCCEEEEEeCCEEEEecCh
Q 011713 376 QLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTV--ITIAHRVPTIT-DSDMVMVLSYGELVEYDLP 451 (479)
Q Consensus 376 QRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~-~~Tv--I~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~ 451 (479)
||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+ |+|||+++.+. .||+|++|++|+|++.|++
T Consensus 168 qRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 247 (279)
T 2ihy_A 168 QRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAV 247 (279)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999988643 7899 99999999875 5999999999999999999
Q ss_pred hhhhcc
Q 011713 452 SNLMKT 457 (479)
Q Consensus 452 ~eLl~~ 457 (479)
+++++.
T Consensus 248 ~~~~~~ 253 (279)
T 2ihy_A 248 EDILTS 253 (279)
T ss_dssp HHHCSH
T ss_pred HHHhcc
Confidence 998754
No 36
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.7e-51 Score=411.38 Aligned_cols=211 Identities=25% Similarity=0.396 Sum_probs=187.7
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +++|+|
T Consensus 4 l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 79 (359)
T 2yyz_A 4 IRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGM 79 (359)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEE
T ss_pred EEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEE
Confidence 899999999953 4599999999999999999999999999999999999999999999999999887753 678999
Q ss_pred EcCCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 313 IPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 313 V~Q~~~lF~g-Ti~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
|+|++.+|.. |++||+.++. ..+ ++++.++++..++.++..+.| .+||||||||++|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQLSGGQQQRVALARAL 148 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999976 9999997532 111 356788888888876655554 57999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhhccC
Q 011713 385 LKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|++++.
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999999999988643 79999999999987 459999999999999999999998754
No 37
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.1e-51 Score=411.64 Aligned_cols=214 Identities=26% Similarity=0.425 Sum_probs=187.8
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccc
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i 310 (479)
..|+++||+++|+++ .++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .|++|
T Consensus 13 ~~l~~~~l~~~y~g~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 89 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG-ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNV 89 (355)
T ss_dssp EEEEEEEEEECCTTS-TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSE
T ss_pred ceEEEEEEEEEEcCC-CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcE
Confidence 369999999999422 359999999999999999999999999999999999999999999999999987654 47889
Q ss_pred eEEcCCCccccc-cHHhhcCCC---CCCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 011713 311 SIIPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (479)
Q Consensus 311 ~~V~Q~~~lF~g-Ti~eNi~~~---~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiAR 382 (479)
+||+|++.+|.. |++|||.++ ...+ ++++.++++..++.++..+.| .+||||||||++|||
T Consensus 90 g~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRvalAr 158 (355)
T 1z47_A 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-----------HELSGGQQQRVALAR 158 (355)
T ss_dssp EEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 999999999986 999999752 1222 356778888888766655544 579999999999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhccC
Q 011713 383 VLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 383 All~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|++++++++.
T Consensus 159 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 159 ALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999988643 799999999999875 59999999999999999999998743
No 38
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.2e-51 Score=409.39 Aligned_cols=210 Identities=24% Similarity=0.417 Sum_probs=186.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
|+++||+++|++ . +|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .|++|+|
T Consensus 2 l~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 76 (348)
T 3d31_A 2 IEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAF 76 (348)
T ss_dssp EEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEE
T ss_pred EEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEE
Confidence 789999999953 4 9999999999999999999999999999999999999999999999999987654 4788999
Q ss_pred EcCCCccccc-cHHhhcCCC----CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcC
Q 011713 313 IPQEPTLFRG-SVRTNLDPL----GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (479)
Q Consensus 313 V~Q~~~lF~g-Ti~eNi~~~----~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~ 387 (479)
|+|++.+|+. |++||+.++ ....++++.++++..++.++..+.| .+||||||||++|||||+++
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRvalAraL~~~ 145 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVTN 145 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTSC
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHHHHcC
Confidence 9999999987 999999753 1122377888888888766554444 57999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhhccC
Q 011713 388 NRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 388 p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|++++++++.
T Consensus 146 P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999988743 79999999999976 559999999999999999999998743
No 39
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=4.3e-51 Score=391.79 Aligned_cols=208 Identities=23% Similarity=0.298 Sum_probs=172.2
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhcc--CCCCCceEEECCeecCCCCHHHH-hcc
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDL-RTK 309 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~--~~p~~G~I~i~g~~i~~~~~~~l-r~~ 309 (479)
|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.++|.++.+.+.... |..
T Consensus 4 l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 4 LEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred EEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 899999999963 4699999999999999999999999999999999999 89999999999999998887665 456
Q ss_pred ceEEcCCCccccc-cHHhhcCCC-----C-CCC----HHHHHHHHHHccHH-HHHHhCCccccccccCCCCC-CChhHHH
Q 011713 310 LSIIPQEPTLFRG-SVRTNLDPL-----G-MYS----DNEIWEAMEKCQLK-ATISRLPMLLDSSVSDEGEN-WSVGQRQ 376 (479)
Q Consensus 310 i~~V~Q~~~lF~g-Ti~eNi~~~-----~-~~~----~~~i~~a~~~a~l~-~~i~~lp~G~~T~vge~G~~-LSgGQrQ 376 (479)
++||||+|.+|.+ |++||+.+. . ..+ .+++.++++..++. ++ .+.++ .. |||||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~~~----~~~LSgGqkQ 150 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESY-------LSRYL----NEGFSGGEKK 150 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGG-------GGSBT----TCC----HHH
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhH-------hcCCc----ccCCCHHHHH
Confidence 9999999999986 999999642 1 112 23444555555441 21 22222 34 9999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc--CCEEEEEeCCEEEEecChhh
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD--SDMVMVLSYGELVEYDLPSN 453 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~--~D~I~vl~~G~Ive~G~~~e 453 (479)
|++|||||+++|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++.
T Consensus 151 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 151 RNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999999999999999885 47999999999999876 59999999999999999873
No 40
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=4.4e-51 Score=410.32 Aligned_cols=212 Identities=24% Similarity=0.373 Sum_probs=181.9
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++.. +++|+
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 86 (372)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEE
Confidence 4999999999953 4599999999999999999999999999999999999999999999999999887654 57899
Q ss_pred EEcCCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 011713 312 IIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA 383 (479)
||+|++.+|.. |++|||.++. ..+ ++++.++++..++.++..+.| .+||||||||++||||
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalArA 155 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVARA 155 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999976 9999997642 223 245777888887766555544 6899999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhhccC
Q 011713 384 LLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 384 ll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
|+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|++++++++.
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999999999999988643 79999999999987 469999999999999999999998743
No 41
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.5e-51 Score=412.35 Aligned_cols=212 Identities=23% Similarity=0.384 Sum_probs=186.4
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +++|+
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (362)
T 2it1_A 3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVG 78 (362)
T ss_dssp CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEE
Confidence 3899999999953 4599999999999999999999999999999999999999999999999999887754 57899
Q ss_pred EEcCCCccccc-cHHhhcCCC---CCCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 011713 312 IIPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~---~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA 383 (479)
||+|++.+|.. |++||+.++ ...+ ++++.++++..++.++..+.| .+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalArA 147 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP-----------WQLSGGQQQRVAIARA 147 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG-----------GGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999986 999999753 1222 345777788877765544444 5799999999999999
Q ss_pred hhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhhccC
Q 011713 384 LLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 384 ll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~~~ 458 (479)
|+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|++++++++.
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999999988743 79999999999986 459999999999999999999998753
No 42
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.5e-51 Score=412.03 Aligned_cols=213 Identities=23% Similarity=0.375 Sum_probs=186.6
Q ss_pred EEEEeEEEEeCCCCCc--eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCC---HHHHh
Q 011713 233 IELEDLKVRYRPNTPL--VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG---LKDLR 307 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~--vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~---~~~lr 307 (479)
|+++||+++|++ .+ +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ....|
T Consensus 4 l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 4 IIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp EEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 899999999954 45 999999999999999999999999999999999999999999999999987621 23457
Q ss_pred ccceEEcCCCccccc-cHHhhcCCCC---CCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHH
Q 011713 308 TKLSIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 308 ~~i~~V~Q~~~lF~g-Ti~eNi~~~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRla 379 (479)
++|+||+|++.+|.. |++||+.++. ..+ ++++.++++..++.++..+.| .+||||||||++
T Consensus 82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSGGq~QRva 150 (353)
T 1oxx_K 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQRVA 150 (353)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHH
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHH
Confidence 889999999999986 9999997532 122 346778888888776655544 579999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhhhc
Q 011713 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 380 iARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
|||||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|++.
T Consensus 151 lAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988743 799999999999875 599999999999999999999987
Q ss_pred cC
Q 011713 457 TN 458 (479)
Q Consensus 457 ~~ 458 (479)
+.
T Consensus 231 ~p 232 (353)
T 1oxx_K 231 NP 232 (353)
T ss_dssp SC
T ss_pred Cc
Confidence 53
No 43
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=9.1e-51 Score=408.80 Aligned_cols=212 Identities=22% Similarity=0.343 Sum_probs=185.1
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCC------CCHHH
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS------MGLKD 305 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~------~~~~~ 305 (479)
.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+ ++.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~-- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP-- 78 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--
Confidence 3899999999953 459999999999999999999999999999999999999999999999999876 554
Q ss_pred HhccceEEcCCCccccc-cHHhhcCCC---CCCC----HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHH
Q 011713 306 LRTKLSIIPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 306 lr~~i~~V~Q~~~lF~g-Ti~eNi~~~---~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
.+++|+||+|++.+|.. |++||+.++ ...+ ++++.++++..++.++..+.| .+||||||||
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QR 147 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQR 147 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHHH
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc-----------ccCCHHHHHH
Confidence 36789999999999975 999999753 1222 245677788777765544444 5799999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhh-cCCEEEEEeCCEEEEecChhhh
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTIT-DSDMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~~D~I~vl~~G~Ive~G~~~eL 454 (479)
+||||||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++++
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988643 799999999999875 5999999999999999999999
Q ss_pred hccC
Q 011713 455 MKTN 458 (479)
Q Consensus 455 l~~~ 458 (479)
+.+.
T Consensus 228 ~~~p 231 (372)
T 1g29_1 228 YDKP 231 (372)
T ss_dssp HHSC
T ss_pred HhCc
Confidence 8743
No 44
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.5e-50 Score=389.87 Aligned_cols=211 Identities=19% Similarity=0.249 Sum_probs=177.6
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhcc--CCCCCceEEECCeecCCCCHHHH-hc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDL-RT 308 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~--~~p~~G~I~i~g~~i~~~~~~~l-r~ 308 (479)
.|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.++|.++.+++...+ |.
T Consensus 20 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 20 MLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 5999999999953 4699999999999999999999999999999999999 67999999999999988887665 45
Q ss_pred cceEEcCCCccccc-cHHhhcCCC--------C--CCCHH----HHHHHHHHccHHHHHHhCCccccccccCCC--CCCC
Q 011713 309 KLSIIPQEPTLFRG-SVRTNLDPL--------G--MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEG--ENWS 371 (479)
Q Consensus 309 ~i~~V~Q~~~lF~g-Ti~eNi~~~--------~--~~~~~----~i~~a~~~a~l~~~i~~lp~G~~T~vge~G--~~LS 371 (479)
.|+||+|+|.+|.+ |++||+.+. . ..+.+ ++.++++..+ +++.+.++. .+||
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~~~LS 166 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLK-----------MPEDLLTRSVNVGFS 166 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTT-----------CCTTTTTSBTTTTCC
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcC-----------CChhHhcCCcccCCC
Confidence 69999999999887 899998531 0 12222 3334444433 333222222 2599
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc--CCEEEEEeCCEEEEe
Q 011713 372 VGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD--SDMVMVLSYGELVEY 448 (479)
Q Consensus 372 gGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~--~D~I~vl~~G~Ive~ 448 (479)
||||||++|||||+++|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 167 gGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 167 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999875 47999999999999875 899999999999999
Q ss_pred cChhhhh
Q 011713 449 DLPSNLM 455 (479)
Q Consensus 449 G~~~eLl 455 (479)
|+++++.
T Consensus 247 g~~~~~~ 253 (267)
T 2zu0_C 247 GDFTLVK 253 (267)
T ss_dssp ECTTHHH
T ss_pred cCHHHHh
Confidence 9999874
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.7e-50 Score=389.18 Aligned_cols=206 Identities=22% Similarity=0.314 Sum_probs=179.5
Q ss_pred EEEEeEEEEeCCC--CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccc
Q 011713 233 IELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (479)
Q Consensus 233 I~~~~vsf~Y~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i 310 (479)
|+++||+++|++. ..++|+|+||+|+ ||+++|+||||||||||+++|+|++ |++|+|.++|.++.+. .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999641 1459999999999 9999999999999999999999999 9999999999998765 33 7889
Q ss_pred e-EEcCCCccccccHHhhcCCCC---CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc
Q 011713 311 S-IIPQEPTLFRGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (479)
Q Consensus 311 ~-~V~Q~~~lF~gTi~eNi~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~ 386 (479)
+ ||||++.+ ..|++||+.+.. ...++++.++++..++.+ ........+||||||||++|||||++
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LSgGqkqRv~lAraL~~ 145 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGE----------EILRRKLYKLSAGQSVLVRTSLALAS 145 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCG----------GGGGSBGGGSCHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCCh----------hHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 9 99999999 889999997531 345667777777765540 33344456899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCC-EEEEEeCCEEEEecChhhhhc
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSD-MVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D-~I~vl~~G~Ive~G~~~eLl~ 456 (479)
+|++||||||||+||+.+.+.+.+.|+++.+ |+|++||+++.+. .|| +|++|++|++++.|+++++.+
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 146 QPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999999988754 9999999999875 699 999999999999999999974
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3.8e-50 Score=385.29 Aligned_cols=200 Identities=21% Similarity=0.332 Sum_probs=173.4
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
-|+++||+++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|. +|++|+
T Consensus 4 ~l~i~~l~~~y~~~-~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEEETTT-TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred eEEEeeEEEEeCCC-CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 38999999999622 4699999999999999999999999999999999999999999998 466899
Q ss_pred EEcCCCccc-cccHHhhcCCCC----C----CC---HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHH
Q 011713 312 IIPQEPTLF-RGSVRTNLDPLG----M----YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 312 ~V~Q~~~lF-~gTi~eNi~~~~----~----~~---~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRla 379 (479)
||||++.+| ..|++||+.++. . .. ++++.++++..++.++..+ ...+||||||||++
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~qrv~ 138 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKR-----------EFTSLSGGQRQLIL 138 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTS-----------BGGGSCHHHHHHHH
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcC-----------ChhhCCHHHHHHHH
Confidence 999999987 569999997531 0 11 2456777777776544332 34689999999999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhh-hcCCEEEEEeCCEEEEecChhhhhc
Q 011713 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP--GSTVITIAHRVPTI-TDSDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 380 iARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|++||+++.+ +.||+|++|++|+ ++.|+++++++
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 99999999999999999999999999999999988753 79999999999988 5699999999999 99999999875
Q ss_pred c
Q 011713 457 T 457 (479)
Q Consensus 457 ~ 457 (479)
.
T Consensus 218 ~ 218 (253)
T 2nq2_C 218 S 218 (253)
T ss_dssp H
T ss_pred c
Confidence 4
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.1e-49 Score=369.99 Aligned_cols=195 Identities=27% Similarity=0.381 Sum_probs=166.0
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.|+++||+++|++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+.|+
T Consensus 10 ~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~ 81 (214)
T 1sgw_A 10 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF 81 (214)
T ss_dssp EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred eEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEE
Confidence 5999999999964 5999999999999999999999999999999999999999999999999986 3688999
Q ss_pred EEcCCCccccc-cHHhhcCCC----C-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhh
Q 011713 312 IIPQEPTLFRG-SVRTNLDPL----G-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 385 (479)
Q Consensus 312 ~V~Q~~~lF~g-Ti~eNi~~~----~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll 385 (479)
||||++.+|.+ |++||+.++ . ...++++.++++..++ +.. ......||||||||++|||||+
T Consensus 82 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~-~~~~~~LSgGqkqrv~laraL~ 149 (214)
T 1sgw_A 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV-----------LDL-KKKLGELSQGTIRRVQLASTLL 149 (214)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTC-----------CCT-TSBGGGSCHHHHHHHHHHHHTT
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCC-----------CcC-CCChhhCCHHHHHHHHHHHHHH
Confidence 99999999987 999999642 1 2235566667666554 333 4456789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcCCEEEEEeCCEEE
Q 011713 386 KRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVLSYGELV 446 (479)
Q Consensus 386 ~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl~~G~Iv 446 (479)
++|++||||||||+||+.+...+.+.|+++. +++|+|++||+++.+..++..+++.+|+|-
T Consensus 150 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~~~~~ 211 (214)
T 1sgw_A 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYSTKID 211 (214)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGBC---
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeCCccc
Confidence 9999999999999999999999999998865 478999999999998875444556677764
No 48
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=1.2e-46 Score=367.87 Aligned_cols=229 Identities=14% Similarity=0.124 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccCCCCCCCCC-CCccEEEEeEEEEeCCCCC
Q 011713 169 FVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWP-SHGRIELEDLKVRYRPNTP 247 (479)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~e~~~~~~~~~~~~~~~-~~~~I~~~~vsf~Y~~~~~ 247 (479)
...+++.+..+ ..++..+...+..++++..+.+|+.++++.+++... . ...++ ..+.|+++||+|+|+ .
T Consensus 44 n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~---~---~~~~~~~~~~i~~~~vs~~y~---~ 113 (305)
T 2v9p_A 44 NARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLAT---G---EGSWKSILTFFNYQNIELITF---I 113 (305)
T ss_dssp HHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCC---S---SCCTHHHHHHHHHTTCCHHHH---H
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC---C---CCcccccCCeEEEEEEEEEcC---h
Confidence 33444444333 355667777888889999999999999986443211 0 01111 123599999999996 4
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHh-
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT- 326 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~e- 326 (479)
++|+|+||+|++|+++|||||||||||||+++|+|+| +|+| +++|+|++++|.+|+++
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~~ 172 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLADT 172 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTTC
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHHH
Confidence 6999999999999999999999999999999999999 8998 45789999999999998
Q ss_pred hcCCCCCCCHHHHHHHHHHccHHHHHHh-CCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHH
Q 011713 327 NLDPLGMYSDNEIWEAMEKCQLKATISR-LPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATD 405 (479)
Q Consensus 327 Ni~~~~~~~~~~i~~a~~~a~l~~~i~~-lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te 405 (479)
||.+.+++++ +++++++. ||+|+| |.+|||||||| |||++++|+||| ||+||+.++
T Consensus 173 ni~~~~~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~ 229 (305)
T 2v9p_A 173 RAALVDDATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAE 229 (305)
T ss_dssp SCEEEEEECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTC
T ss_pred hhccCccccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHH
Confidence 9987544443 45678888 999998 78999999999 999999999999 999999999
Q ss_pred HHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHHHH
Q 011713 406 AILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVAEY 468 (479)
Q Consensus 406 ~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~~~ 468 (479)
..+.. +|||+++++.||+| +|++|+|++.|+|++| ++.|+++|..+
T Consensus 230 ~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~~~~ 275 (305)
T 2v9p_A 230 DRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLWGRL 275 (305)
T ss_dssp GGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHSTTTT
T ss_pred HHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHHHHc
Confidence 88852 39999999999999 9999999999999999 78899988754
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=6.6e-40 Score=346.32 Aligned_cols=198 Identities=25% Similarity=0.316 Sum_probs=165.3
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +..|+
T Consensus 287 ~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~ 350 (538)
T 1yqt_A 287 LVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVA 350 (538)
T ss_dssp EEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEE
T ss_pred EEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEE
Confidence 5899999999953 3799999999999999999999999999999999999999999985 23699
Q ss_pred EEcCCCcc-ccccHHhhcCCC--CC-CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcC
Q 011713 312 IIPQEPTL-FRGSVRTNLDPL--GM-YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (479)
Q Consensus 312 ~V~Q~~~l-F~gTi~eNi~~~--~~-~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~ 387 (479)
||||++.. +..|+.||+... .. ...+++.++++..++.+ ........||||||||++|||||+++
T Consensus 351 ~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGe~qrv~lAraL~~~ 419 (538)
T 1yqt_A 351 YKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIID-----------LYDREVNELSGGELQRVAIAATLLRD 419 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGG-----------GTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred EEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 99999976 567999988532 11 12333444444444322 22333457999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhc-CCEEEEEeC--CEEEEecChhhhhc
Q 011713 388 NRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSY--GELVEYDLPSNLMK 456 (479)
Q Consensus 388 p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-~D~I~vl~~--G~Ive~G~~~eLl~ 456 (479)
|++|||||||++||+.+...+.+.|+++. .++|+|+|||++..+.. ||||++|++ |+++..|++++++.
T Consensus 420 p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999999999999999874 38999999999999864 999999996 88889999988874
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.2e-39 Score=347.89 Aligned_cols=198 Identities=25% Similarity=0.326 Sum_probs=166.3
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.++++|++++|++ ..|+++||++++||++||+||||||||||+++|+|+++|++|+|.+ +.+|+
T Consensus 357 ~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~ 420 (607)
T 3bk7_A 357 LVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVA 420 (607)
T ss_dssp EEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEE
T ss_pred EEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEE
Confidence 5899999999954 3799999999999999999999999999999999999999999986 24799
Q ss_pred EEcCCCcc-ccccHHhhcCCC--CC-CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcC
Q 011713 312 IIPQEPTL-FRGSVRTNLDPL--GM-YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (479)
Q Consensus 312 ~V~Q~~~l-F~gTi~eNi~~~--~~-~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~ 387 (479)
||||++.+ ++.|++||+... .. ...+.+.++++..++.++ .+.+ ...||||||||++|||||+++
T Consensus 421 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~----~~~LSGGe~QRv~iAraL~~~ 489 (607)
T 3bk7_A 421 YKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDL-------YDRN----VEDLSGGELQRVAIAATLLRD 489 (607)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTT-------TTSB----GGGCCHHHHHHHHHHHHHTSC
T ss_pred EEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchH-------hcCC----hhhCCHHHHHHHHHHHHHHhC
Confidence 99999876 567999998532 11 123344555555544322 2333 357999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhc-CCEEEEEeC--CEEEEecChhhhhc
Q 011713 388 NRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSY--GELVEYDLPSNLMK 456 (479)
Q Consensus 388 p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-~D~I~vl~~--G~Ive~G~~~eLl~ 456 (479)
|++|||||||++||+.+...+.+.|+++. .++|+|+|||++..+.. ||||++|++ |+++..|++++++.
T Consensus 490 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999999999999999999999999864 48999999999998875 999999997 88888999998875
No 51
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.7e-39 Score=356.17 Aligned_cols=197 Identities=20% Similarity=0.282 Sum_probs=151.6
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
-|+++||+|+|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. .+|+
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I~ 739 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRIA 739 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCEE
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cceE
Confidence 49999999999754456999999999999999999999999999999999999999999999872 1356
Q ss_pred EEcCCCcc-----ccc----------------------------------------------------------------
Q 011713 312 IIPQEPTL-----FRG---------------------------------------------------------------- 322 (479)
Q Consensus 312 ~V~Q~~~l-----F~g---------------------------------------------------------------- 322 (479)
||+|++.. ++.
T Consensus 740 yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~ 819 (986)
T 2iw3_A 740 YIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC 819 (986)
T ss_dssp EECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred eeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence 66665421 011
Q ss_pred --cHHhhcCCCC------------------------------------------CCCHHHHHHHHHHccHHHHHHhCCcc
Q 011713 323 --SVRTNLDPLG------------------------------------------MYSDNEIWEAMEKCQLKATISRLPML 358 (479)
Q Consensus 323 --Ti~eNi~~~~------------------------------------------~~~~~~i~~a~~~a~l~~~i~~lp~G 358 (479)
|++||+.+.. ...++++.++++..++.+...
T Consensus 820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~----- 894 (986)
T 2iw3_A 820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV----- 894 (986)
T ss_dssp EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH-----
T ss_pred hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh-----
Confidence 2344443210 012234444555554432110
Q ss_pred ccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhh-cCCEE
Q 011713 359 LDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTIT-DSDMV 437 (479)
Q Consensus 359 ~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~-~~D~I 437 (479)
.......||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||+++.+. .||+|
T Consensus 895 ----~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrV 968 (986)
T 2iw3_A 895 ----SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEV 968 (986)
T ss_dssp ----HHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEE
T ss_pred ----cCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEE
Confidence 12234579999999999999999999999999999999999999999999875 579999999999886 59999
Q ss_pred EEEeCCEEEEecC
Q 011713 438 MVLSYGELVEYDL 450 (479)
Q Consensus 438 ~vl~~G~Ive~G~ 450 (479)
++|++|++++.|+
T Consensus 969 ivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 969 WAVKDGRMTPSGH 981 (986)
T ss_dssp ECCBTTBCCC---
T ss_pred EEEECCEEEEeCC
Confidence 9999999998774
No 52
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.6e-39 Score=339.00 Aligned_cols=198 Identities=20% Similarity=0.255 Sum_probs=165.5
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccce
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
.++++|++++|++ ..|++.||+|++||++||+||||||||||+++|+|+++|++|+|.++| ..++
T Consensus 269 ~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i~ 333 (538)
T 3ozx_A 269 KMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QILS 333 (538)
T ss_dssp EEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCEE
T ss_pred eEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eeeE
Confidence 5899999999964 378999999999999999999999999999999999999999999876 3689
Q ss_pred EEcCCCcc-ccccHHhhcCCC-CC---CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc
Q 011713 312 IIPQEPTL-FRGSVRTNLDPL-GM---YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (479)
Q Consensus 312 ~V~Q~~~l-F~gTi~eNi~~~-~~---~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~ 386 (479)
|+||++.. |..|+++|+... .. ...+.+.++++..++.++. ......||||||||++|||||++
T Consensus 334 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGGq~QRv~iAraL~~ 402 (538)
T 3ozx_A 334 YKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLL-----------ESNVNDLSGGELQKLYIAATLAK 402 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCT-----------TSBGGGCCHHHHHHHHHHHHHHS
T ss_pred eechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHh-----------cCChhhCCHHHHHHHHHHHHHHc
Confidence 99999875 578999998532 11 2234456666666664332 22335799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhc-CCEEEEEeC--CEEEEecChhhhh
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSY--GELVEYDLPSNLM 455 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-~D~I~vl~~--G~Ive~G~~~eLl 455 (479)
+|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||+||++ |.+...|++.++.
T Consensus 403 ~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 403 EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 999999999999999999999999998874 47999999999999875 999999987 5666677766654
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.6e-38 Score=339.08 Aligned_cols=193 Identities=24% Similarity=0.348 Sum_probs=155.9
Q ss_pred EeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE---------EECCeecCCCCHHH-
Q 011713 236 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI---------LIDGLDICSMGLKD- 305 (479)
Q Consensus 236 ~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I---------~i~g~~i~~~~~~~- 305 (479)
+||+++|++. ..+|+|+| ++++||++||+||||||||||+++|+|+++|++|++ .++|.++.++....
T Consensus 95 ~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~ 172 (607)
T 3bk7_A 95 EDCVHRYGVN-AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLK 172 (607)
T ss_dssp GSEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CCeEEEECCC-CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhh
Confidence 8999999643 24899999 999999999999999999999999999999999996 45666554321111
Q ss_pred -HhccceEEcCCCc----cccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 011713 306 -LRTKLSIIPQEPT----LFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 380 (479)
Q Consensus 306 -lr~~i~~V~Q~~~----lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlai 380 (479)
.+..+++++|... ++.+|++||+.... ..+++.++++..++.++. +..+ ..||||||||++|
T Consensus 173 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~--~~~~~~~~L~~lgL~~~~-------~~~~----~~LSGGekQRvaI 239 (607)
T 3bk7_A 173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD--EVGKFEEVVKELELENVL-------DREL----HQLSGGELQRVAI 239 (607)
T ss_dssp HTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC--CSSCHHHHHHHTTCTTGG-------GSBG----GGCCHHHHHHHHH
T ss_pred hhhcceEEeechhhhchhhccccHHHHhhhhH--HHHHHHHHHHHcCCCchh-------CCCh----hhCCHHHHHHHHH
Confidence 2346889988743 44579999985321 234567788877764432 3333 4699999999999
Q ss_pred HHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCC
Q 011713 381 GRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYG 443 (479)
Q Consensus 381 ARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G 443 (479)
||||+++|++||||||||+||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|
T Consensus 240 AraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 240 AAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 999999999999999999999999999999998864 48999999999998865 9999999865
No 54
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-38 Score=332.95 Aligned_cols=197 Identities=23% Similarity=0.300 Sum_probs=164.1
Q ss_pred EeEEEEeCCCCCceeeeeeEEeeCC-----cEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccc
Q 011713 236 EDLKVRYRPNTPLVLKGITCTFKEG-----TRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (479)
Q Consensus 236 ~~vsf~Y~~~~~~vL~~isl~i~~G-----e~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i 310 (479)
++++|+|++. ..+++|+||++++| |++||+||||||||||+++|+|+.+|++|+. +. +..+
T Consensus 350 ~~~~~~y~~~-~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i 415 (608)
T 3j16_B 350 ASRAFSYPSL-KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNV 415 (608)
T ss_dssp SSSCCEECCE-EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCE
T ss_pred cceeEEecCc-ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcE
Confidence 6788999753 34899999999999 7899999999999999999999999999972 21 3469
Q ss_pred eEEcCCCc-cccccHHhhcCC--CC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc
Q 011713 311 SIIPQEPT-LFRGSVRTNLDP--LG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (479)
Q Consensus 311 ~~V~Q~~~-lF~gTi~eNi~~--~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~ 386 (479)
+|+||++. .|..|+++|+.. .. ....+...++++..++.++ .+.. -..||||||||++|||||+.
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~----~~~LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDI-------IDQE----VQHLSGGELQRVAIVLALGI 484 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTT-------SSSB----SSSCCHHHHHHHHHHHHTTS
T ss_pred EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhh-------hcCC----hhhCCHHHHHHHHHHHHHHh
Confidence 99999976 578899999842 11 2344555666666665432 2223 35799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhc-CCEEEEEeC--CEEEEecChhhhhcc
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSY--GELVEYDLPSNLMKT 457 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-~D~I~vl~~--G~Ive~G~~~eLl~~ 457 (479)
+|+||||||||++||+.+...+.+.|+++. .++|+|+|||++..+.. ||||++|++ |+++..|++++++..
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 999999999999999999999999998864 48999999999998865 999999997 999999999999874
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.3e-38 Score=334.54 Aligned_cols=196 Identities=25% Similarity=0.332 Sum_probs=154.3
Q ss_pred EEE-EeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE---------EECCeecCCCC
Q 011713 233 IEL-EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI---------LIDGLDICSMG 302 (479)
Q Consensus 233 I~~-~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I---------~i~g~~i~~~~ 302 (479)
.++ +||+++|++. .++|+|+| +|++||++||+||||||||||+++|+|+++|++|++ .++|.++....
T Consensus 21 ~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~ 98 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN-AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98 (538)
T ss_dssp ---CCCEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred hhHhcCcEEEECCc-cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH
Confidence 466 6999999643 25899999 999999999999999999999999999999999996 45665543221
Q ss_pred HHH--HhccceEEcCCCcc----ccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 303 LKD--LRTKLSIIPQEPTL----FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 303 ~~~--lr~~i~~V~Q~~~l----F~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
... .+..+++++|+..+ +.+|+++|+.... ..+++.++++..++.++ .+.++ ..|||||||
T Consensus 99 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~--~~~~~~~~l~~lgl~~~-------~~~~~----~~LSgGekQ 165 (538)
T 1yqt_A 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD--ETGKLEEVVKALELENV-------LEREI----QHLSGGELQ 165 (538)
T ss_dssp HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC--SSSCHHHHHHHTTCTTT-------TTSBG----GGCCHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh--HHHHHHHHHHHcCCChh-------hhCCh----hhCCHHHHH
Confidence 111 13468899997654 3468999885311 13456777777776432 23333 469999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhc-CCEEEEEeCC
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITD-SDMVMVLSYG 443 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-~D~I~vl~~G 443 (479)
|++|||||+.+|++||||||||+||+.+...+.+.|+++. .++|+|+|||++..+.. ||+|++|++|
T Consensus 166 Rv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 166 RVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999999999999999999999999999999999998764 48999999999998865 9999999865
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=7.5e-38 Score=340.44 Aligned_cols=213 Identities=24% Similarity=0.271 Sum_probs=153.0
Q ss_pred EEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHh----------------------ccCCCCCceEEECC
Q 011713 238 LKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF----------------------RLVEPENGRILIDG 295 (479)
Q Consensus 238 vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~----------------------g~~~p~~G~I~i~g 295 (479)
..+.+.+...++|+||||+|++||++||+||||||||||+++++ |+ .+.+|.|.++|
T Consensus 326 ~~~~~~~~~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl-~~~~~~i~~~~ 404 (670)
T 3ux8_A 326 RWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGL-EHLDKVIDIDQ 404 (670)
T ss_dssp CEEEEEEECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECG-GGCSEEEECCS
T ss_pred cceeecCccccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccc-cccCceeEecc
Confidence 34444333345899999999999999999999999999998764 33 33457899999
Q ss_pred eecCCCCHHHHhcc-----------------------------------------ceEEcCCCccc--------------
Q 011713 296 LDICSMGLKDLRTK-----------------------------------------LSIIPQEPTLF-------------- 320 (479)
Q Consensus 296 ~~i~~~~~~~lr~~-----------------------------------------i~~V~Q~~~lF-------------- 320 (479)
.++...+....+.. .++++|+..++
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~ 484 (670)
T 3ux8_A 405 SPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKR 484 (670)
T ss_dssp SCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCC
T ss_pred ccCCCCCCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcc
Confidence 98876543222111 12333332221
Q ss_pred -------------------cccHHhhcCCCCCCC-HHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 011713 321 -------------------RGSVRTNLDPLGMYS-DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 380 (479)
Q Consensus 321 -------------------~gTi~eNi~~~~~~~-~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlai 380 (479)
.-|++||+.+..... .++..+++...++ + +...+.....||||||||++|
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~l~~~~l---------~-~~~~~~~~~~LSgG~~qrv~i 554 (670)
T 3ux8_A 485 YNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGL---------G-YMKLGQPATTLSGGEAQRVKL 554 (670)
T ss_dssp BCHHHHTCCBTTBCHHHHHTSBHHHHHHHTTTCHHHHHHHHHHHHTTC---------T-TSBTTCCGGGCCHHHHHHHHH
T ss_pred cChhhhheeecCCCHHHHhhCCHHHHHHHHHHhhhHHHHHHHHHHcCC---------c-hhhccCCchhCCHHHHHHHHH
Confidence 246777765432211 1222333333222 1 123455567899999999999
Q ss_pred HHHhhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcCCEEEEE------eCCEEEEecC
Q 011713 381 GRVLLKRN---RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVL------SYGELVEYDL 450 (479)
Q Consensus 381 ARAll~~p---~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl------~~G~Ive~G~ 450 (479)
||||+++| ++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.++.||||++| ++|+|++.|+
T Consensus 555 AraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~ 634 (670)
T 3ux8_A 555 AAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGT 634 (670)
T ss_dssp HHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEEC
T ss_pred HHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecC
Confidence 99999887 5999999999999999999999998864 489999999999999999999999 8999999999
Q ss_pred hhhhhccCchH
Q 011713 451 PSNLMKTNSAF 461 (479)
Q Consensus 451 ~~eLl~~~g~y 461 (479)
++|+.+....|
T Consensus 635 ~~~~~~~~~~~ 645 (670)
T 3ux8_A 635 PEEVAEVKESH 645 (670)
T ss_dssp HHHHHTCTTCH
T ss_pred HHHHHhCCccH
Confidence 99998755444
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4.1e-36 Score=330.94 Aligned_cols=197 Identities=21% Similarity=0.266 Sum_probs=164.4
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccc
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i 310 (479)
..+...|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+| |+| +|.+... +.++
T Consensus 434 ~~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~ 497 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRT 497 (986)
T ss_dssp CEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCE
T ss_pred ceeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeE
Confidence 35888899999964 459999999999999999999999999999999995 554 5654321 1247
Q ss_pred eEEcCCC-ccc-cccHHhhcCCC-CCCCHHHHHHHHHHccH-HHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc
Q 011713 311 SIIPQEP-TLF-RGSVRTNLDPL-GMYSDNEIWEAMEKCQL-KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (479)
Q Consensus 311 ~~V~Q~~-~lF-~gTi~eNi~~~-~~~~~~~i~~a~~~a~l-~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~ 386 (479)
+|++|++ .++ .-|+.||+... ... ++++.++++..++ .++..+.+ ..||||||||++|||||+.
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~-----------~~LSGGqkQRvaLArAL~~ 565 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPI-----------SALSGGWKMKLALARAVLR 565 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBG-----------GGCCHHHHHHHHHHHHHHT
T ss_pred EEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCc-----------ccCCHHHHHHHHHHHHHhc
Confidence 8999986 444 45999999641 112 7788899999988 44444332 4699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCEEE-EecChhhhhcc
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGELV-EYDLPSNLMKT 457 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Iv-e~G~~~eLl~~ 457 (479)
+|+||||||||++||+.+...+.+.|++ .++|+|+|||++..+.. ||+|++|++|+++ ..|+++++++.
T Consensus 566 ~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~ 636 (986)
T 2iw3_A 566 NADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKK 636 (986)
T ss_dssp TCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhh
Confidence 9999999999999999999999999988 68999999999999865 9999999999997 58999998753
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=6.3e-37 Score=333.16 Aligned_cols=204 Identities=22% Similarity=0.291 Sum_probs=137.8
Q ss_pred CceeeeeeEEeeCCcEEEEEcCCCCcHHHHH---------------------HHHhccCCCC-------CceEEECCeec
Q 011713 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLI---------------------SALFRLVEPE-------NGRILIDGLDI 298 (479)
Q Consensus 247 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~---------------------~lL~g~~~p~-------~G~I~i~g~~i 298 (479)
..+|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.++
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999998 8999999998 55666777655
Q ss_pred CCCCHHHHhccceEEcCCCccc--------------------cccHHhhcCCCCC--CCH--HH-----HHHHHHHccHH
Q 011713 299 CSMGLKDLRTKLSIIPQEPTLF--------------------RGSVRTNLDPLGM--YSD--NE-----IWEAMEKCQLK 349 (479)
Q Consensus 299 ~~~~~~~lr~~i~~V~Q~~~lF--------------------~gTi~eNi~~~~~--~~~--~~-----i~~a~~~a~l~ 349 (479)
.. ..|+.+++|+|.+.++ .-|++||+.+... ..+ .+ +.++++..
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 43 2355677777765443 3489999875321 111 11 11111111
Q ss_pred HHHHhCCcccccc-ccCCCCCCChhHHHHHHHHHHhhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEc
Q 011713 350 ATISRLPMLLDSS-VSDEGENWSVGQRQLFCLGRVLLKRNR--ILILDEATASIDSATDAILQRIIREEF-PGSTVITIA 425 (479)
Q Consensus 350 ~~i~~lp~G~~T~-vge~G~~LSgGQrQRlaiARAll~~p~--iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~Ia 425 (479)
+.++.+ |++.. .......||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. +++|+|+||
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 122222 22211 122345799999999999999999998 999999999999999999999998764 479999999
Q ss_pred cCchhhhcCCEEEEE------eCCEEEEecChhhhhccCc
Q 011713 426 HRVPTITDSDMVMVL------SYGELVEYDLPSNLMKTNS 459 (479)
Q Consensus 426 Hrl~~i~~~D~I~vl------~~G~Ive~G~~~eLl~~~g 459 (479)
|+++.+..||+|++| ++|++++.|+++++.+...
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence 999999899999999 8999999999999987654
No 59
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.6e-36 Score=332.36 Aligned_cols=207 Identities=24% Similarity=0.302 Sum_probs=153.6
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHH---------HHHhccCC------CCCc------eEEECCeecCCCCH---
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLI---------SALFRLVE------PENG------RILIDGLDICSMGL--- 303 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~---------~lL~g~~~------p~~G------~I~i~g~~i~~~~~--- 303 (479)
..|+||||+|++|+.++|+|+||||||||+ +++.+... +.+| .|.+|..++.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 34444333 3333 35566655543221
Q ss_pred -------HHHh-------------------------------ccceEEcCCCccccc-----------------------
Q 011713 304 -------KDLR-------------------------------TKLSIIPQEPTLFRG----------------------- 322 (479)
Q Consensus 304 -------~~lr-------------------------------~~i~~V~Q~~~lF~g----------------------- 322 (479)
+.+| +..|+++|+..++++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 1112 235677777766543
Q ss_pred ----------cHHhhcCCCCCC-CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCC---
Q 011713 323 ----------SVRTNLDPLGMY-SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN--- 388 (479)
Q Consensus 323 ----------Ti~eNi~~~~~~-~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p--- 388 (479)
|++||+.++... ..++..++++.+|+ |+ ..+|+.+..||||||||++|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL---------~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~p 827 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGL---------GY-VKLGQPATTLSGGEAQRIKLASELRKRDTGR 827 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTG---------GG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSS
T ss_pred cCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCC---------ch-hhccCCccCCCHHHHHHHHHHHHHhhCCCCC
Confidence 334444322211 11233333444333 22 3478888999999999999999999876
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcCCEEEEE------eCCEEEEecChhhhhccCchH
Q 011713 389 RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVL------SYGELVEYDLPSNLMKTNSAF 461 (479)
Q Consensus 389 ~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl------~~G~Ive~G~~~eLl~~~g~y 461 (479)
+||||||||++||+.+.+.+++.|+++. +++|+|+|+|+++.++.||+|++| ++|+|+++|+|+|+++..+.|
T Consensus 828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~sy 907 (916)
T 3pih_A 828 TLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSY 907 (916)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchH
Confidence 7999999999999999999999998864 489999999999999999999999 999999999999999977666
Q ss_pred HHH
Q 011713 462 SKL 464 (479)
Q Consensus 462 ~~l 464 (479)
...
T Consensus 908 t~~ 910 (916)
T 3pih_A 908 TGR 910 (916)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 60
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-36 Score=319.18 Aligned_cols=196 Identities=24% Similarity=0.333 Sum_probs=149.0
Q ss_pred eEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE-----------EECCeecCCCCHHH
Q 011713 237 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-----------LIDGLDICSMGLKD 305 (479)
Q Consensus 237 ~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I-----------~i~g~~i~~~~~~~ 305 (479)
|++++|++. ...|++++ ++++||.+||+||||||||||+++|+|+++|++|+| .++|.++..+....
T Consensus 82 ~~~~~Y~~~-~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~ 159 (608)
T 3j16_B 82 HVTHRYSAN-SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM 159 (608)
T ss_dssp TEEEECSTT-SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHH
T ss_pred CeEEEECCC-ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHH
Confidence 578999754 34788888 699999999999999999999999999999999998 34444433332333
Q ss_pred Hhccce--EEcCCCc----cccc---cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 306 LRTKLS--IIPQEPT----LFRG---SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 306 lr~~i~--~V~Q~~~----lF~g---Ti~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
+++.+. +.+|... .+.+ ++.+++.......++++.++++..++.++..+ . -..|||||||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~-------~----~~~LSgGe~Q 228 (608)
T 3j16_B 160 LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKR-------D----IEKLSGGELQ 228 (608)
T ss_dssp HHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGS-------C----TTTCCHHHHH
T ss_pred HHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCC-------C----hHHCCHHHHH
Confidence 333332 3333322 1222 45555532223455778888888776543322 2 3579999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEccCchhhhc-CCEEEEEeCCEE
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITD-SDMVMVLSYGEL 445 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaHrl~~i~~-~D~I~vl~~G~I 445 (479)
|++|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|..
T Consensus 229 rv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 229 RFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 99999999999999999999999999999999999998754 7999999999998876 999999998754
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=3e-36 Score=317.56 Aligned_cols=192 Identities=20% Similarity=0.285 Sum_probs=151.6
Q ss_pred eEEEEeCCCCCceeeeeeEEee-CCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE-----------EECCeecCCCCHH
Q 011713 237 DLKVRYRPNTPLVLKGITCTFK-EGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-----------LIDGLDICSMGLK 304 (479)
Q Consensus 237 ~vsf~Y~~~~~~vL~~isl~i~-~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I-----------~i~g~~i~~~~~~ 304 (479)
+++.+|.++. ++-..|.++ +||.+||+||||||||||+|+|+|+++|++|+| .++|.++..+...
T Consensus 4 ~~~~~~~~~~---f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~ 80 (538)
T 3ozx_A 4 EVIHRYKVNG---FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80 (538)
T ss_dssp CEEEESSTTS---CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHH
T ss_pred CCceecCCCc---eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHH
Confidence 5678897653 444445554 899999999999999999999999999999999 6777666432222
Q ss_pred HH------hccceEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHH
Q 011713 305 DL------RTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (479)
Q Consensus 305 ~l------r~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRl 378 (479)
.. +..+.+++|.+.++.+|+++++... ...+++.++++..++.+. .+..+ ..||||||||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~--~~~~~~~~~l~~l~l~~~-------~~~~~----~~LSgGe~Qrv 147 (538)
T 3ozx_A 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKI--DERGKKDEVKELLNMTNL-------WNKDA----NILSGGGLQRL 147 (538)
T ss_dssp HHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHH--CCSSCHHHHHHHTTCGGG-------TTSBG----GGCCHHHHHHH
T ss_pred HhhcccchhhccchhhhhhhhccCcHHHHhhcc--hhHHHHHHHHHHcCCchh-------hcCCh----hhCCHHHHHHH
Confidence 11 2235566666777888999987421 123456677777776432 23344 46999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhc-CCEEEEEeCCE
Q 011713 379 CLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITD-SDMVMVLSYGE 444 (479)
Q Consensus 379 aiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~-~D~I~vl~~G~ 444 (479)
+|||||+++|+|||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|.
T Consensus 148 ~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 148 LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 9999999999999999999999999999999999998889999999999998765 99999998764
No 62
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=100.00 E-value=2.5e-34 Score=295.85 Aligned_cols=200 Identities=19% Similarity=0.175 Sum_probs=152.9
Q ss_pred eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC--------------------------------------CCCce
Q 011713 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--------------------------------------PENGR 290 (479)
Q Consensus 249 vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~--------------------------------------p~~G~ 290 (479)
+|++++|++++| +++|+|+||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 799999999999 999999999999999999966653 45889
Q ss_pred EEECCeecCCCCHHHHhcc-ceEEcCCCccccccHHhhcCCCCCCCH---------------------------------
Q 011713 291 ILIDGLDICSMGLKDLRTK-LSIIPQEPTLFRGSVRTNLDPLGMYSD--------------------------------- 336 (479)
Q Consensus 291 I~i~g~~i~~~~~~~lr~~-i~~V~Q~~~lF~gTi~eNi~~~~~~~~--------------------------------- 336 (479)
+++||.+++..++.++++. +++++|++.++-.+-.++..+.+....
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999987777888777 799999998887665444322111110
Q ss_pred ------------HHHHHHHH------H-------ccHHHHHHhC--C----------------ccccc---cccCCCCC-
Q 011713 337 ------------NEIWEAME------K-------CQLKATISRL--P----------------MLLDS---SVSDEGEN- 369 (479)
Q Consensus 337 ------------~~i~~a~~------~-------a~l~~~i~~l--p----------------~G~~T---~vge~G~~- 369 (479)
+++.+... . ..+.+.+..+ | .|++. .++.++..
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 00000000 0 0111222222 1 12232 34444444
Q ss_pred -------CChhHHHHHHHHHHhhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEE
Q 011713 370 -------WSVGQRQLFCLGRVLLKRN--RILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVL 440 (479)
Q Consensus 370 -------LSgGQrQRlaiARAll~~p--~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl 440 (479)
||||||||++|||+++.+| ++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..||+|++|
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 8999999999999999999 9999999999999999999999999988899999999999999999999999
Q ss_pred ----eCCEEEEec
Q 011713 441 ----SYGELVEYD 449 (479)
Q Consensus 441 ----~~G~Ive~G 449 (479)
++|+++...
T Consensus 369 ~k~~~~G~~~~~~ 381 (415)
T 4aby_A 369 EKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEeccCCceEEEE
Confidence 999998653
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=4.1e-34 Score=312.53 Aligned_cols=218 Identities=23% Similarity=0.328 Sum_probs=159.4
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHH-HhccC-------CC----------------
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISA-LFRLV-------EP---------------- 286 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~l-L~g~~-------~p---------------- 286 (479)
..|+++|+++ .+|+||||+|++||++||+|+||||||||++. |+|+. .|
T Consensus 501 ~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~ 573 (842)
T 2vf7_A 501 GWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS 573 (842)
T ss_dssp CEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred ceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence 3599999986 16999999999999999999999999999996 66543 22
Q ss_pred --CCc-------eEEECCeecCCCCH----------HHHhccceEEcC---------C----------------------
Q 011713 287 --ENG-------RILIDGLDICSMGL----------KDLRTKLSIIPQ---------E---------------------- 316 (479)
Q Consensus 287 --~~G-------~I~i~g~~i~~~~~----------~~lr~~i~~V~Q---------~---------------------- 316 (479)
.+| .|.+||.++...+. +.+|+.++.+|+ .
T Consensus 574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~ 653 (842)
T 2vf7_A 574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE 653 (842)
T ss_dssp CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence 467 68999988865432 345544433332 1
Q ss_pred Cccc------------------------c-ccHHhhcCCCCCCCHHHHHHHH----HHccHHHHHHhCCccccc-cccCC
Q 011713 317 PTLF------------------------R-GSVRTNLDPLGMYSDNEIWEAM----EKCQLKATISRLPMLLDS-SVSDE 366 (479)
Q Consensus 317 ~~lF------------------------~-gTi~eNi~~~~~~~~~~i~~a~----~~a~l~~~i~~lp~G~~T-~vge~ 366 (479)
-.++ . -||.||+.+. -.+..... +.....+.++.+ |+.. .++..
T Consensus 654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~lt----v~e~l~~~~~~~~~~~~~~~L~~~--gL~~~~l~~~ 727 (842)
T 2vf7_A 654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALT----VDEAHDFFADESAIFRALDTLREV--GLGYLRLGQP 727 (842)
T ss_dssp TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCB----HHHHHHHTTTSHHHHHHHHHHHHT--TCTTSBTTCC
T ss_pred hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhcc----HHHHHHHhhcchHHHHHHHHHHHc--CCCcccccCC
Confidence 0111 1 2555555321 00000000 001123344444 3433 35667
Q ss_pred CCCCChhHHHHHHHHHHhhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcCCEEEEE--
Q 011713 367 GENWSVGQRQLFCLGRVLLKR---NRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVL-- 440 (479)
Q Consensus 367 G~~LSgGQrQRlaiARAll~~---p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl-- 440 (479)
...||||||||++|||+|+++ |+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.++.||+|++|
T Consensus 728 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~p 807 (842)
T 2vf7_A 728 ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGP 807 (842)
T ss_dssp GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECS
T ss_pred cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECC
Confidence 789999999999999999996 69999999999999999999999998864 589999999999999899999999
Q ss_pred ----eCCEEEEecChhhhhccCchH
Q 011713 441 ----SYGELVEYDLPSNLMKTNSAF 461 (479)
Q Consensus 441 ----~~G~Ive~G~~~eLl~~~g~y 461 (479)
++|+|++.|+++++++....|
T Consensus 808 ~~g~~~G~Iv~~g~~~el~~~~~~~ 832 (842)
T 2vf7_A 808 GAGEDGGRLVAQGTPAEVAQAAGSV 832 (842)
T ss_dssp SSGGGCCSEEEEECHHHHTTCTTCS
T ss_pred CCCCCCCEEEEEcCHHHHHhCchhH
Confidence 799999999999998765433
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-37 Score=322.59 Aligned_cols=190 Identities=14% Similarity=0.054 Sum_probs=153.5
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCc-e-EEECCeecCCCCHHHHhcc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-R-ILIDGLDICSMGLKDLRTK 309 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G-~-I~i~g~~i~~~~~~~lr~~ 309 (479)
.++++||+|+|+ ++||++++|++++|+||||||||||+++|+|++.|++| + |++|| +.|+.
T Consensus 118 mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg---------~~~~~ 180 (460)
T 2npi_A 118 MKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL---------DPQQP 180 (460)
T ss_dssp HHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC---------CTTSC
T ss_pred hhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC---------CccCC
Confidence 356666766663 79999999999999999999999999999999999999 9 99998 13788
Q ss_pred ceEEcCCCcccc----ccHHhhcCCCCCC-----CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 011713 310 LSIIPQEPTLFR----GSVRTNLDPLGMY-----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 380 (479)
Q Consensus 310 i~~V~Q~~~lF~----gTi~eNi~~~~~~-----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlai 380 (479)
+++|||++.+|. .|++||+ ++... .++++.++++.. |++.... ...||||||||++|
T Consensus 181 i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~LSgGq~qrlal 246 (460)
T 2npi_A 181 IFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKDLYLECISQLGQ 246 (460)
T ss_dssp SSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHHHHHHHHHHHHH
T ss_pred eeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhhhhHHHHHHHHH
Confidence 999999996653 4899998 53211 122233333333 3433332 57899999999999
Q ss_pred HHH--hhcCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCch------hh-hcCCE-----EEEEe
Q 011713 381 GRV--LLKRNRI----LILDE-ATASIDSATDAILQRIIREEFPGSTVITIAHRVP------TI-TDSDM-----VMVLS 441 (479)
Q Consensus 381 ARA--ll~~p~i----liLDE-~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~------~i-~~~D~-----I~vl~ 441 (479)
||| |+++|++ ||||| ||++||+. ...+.+.+++. ++|+|+|+|+.+ .+ +.||+ |++|+
T Consensus 247 Ara~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~ 323 (460)
T 2npi_A 247 VVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIP 323 (460)
T ss_dssp HHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEEC
T ss_pred HHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEe
Confidence 999 9999999 99999 99999999 66777777664 789999999987 44 45999 99999
Q ss_pred -CCEEEEecChhhhhc
Q 011713 442 -YGELVEYDLPSNLMK 456 (479)
Q Consensus 442 -~G~Ive~G~~~eLl~ 456 (479)
+|+|+ .|+++++.+
T Consensus 324 k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 324 KLDGVS-AVDDVYKRS 338 (460)
T ss_dssp CCTTCC-CCCHHHHHH
T ss_pred CCCcEE-ECCHHHHhh
Confidence 99999 999998854
No 65
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=2.9e-33 Score=305.99 Aligned_cols=215 Identities=24% Similarity=0.328 Sum_probs=157.6
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHh-cc----C---CCCCc-------------e
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF-RL----V---EPENG-------------R 290 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~-g~----~---~p~~G-------------~ 290 (479)
.++++|++. ..|+||||+|++||.+||+|+||||||||++.|+ |. + .+..| .
T Consensus 629 ~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 701 (972)
T 2r6f_A 629 WLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKV 701 (972)
T ss_dssp EEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEE
T ss_pred EEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceE
Confidence 588999852 2699999999999999999999999999999864 21 1 12233 4
Q ss_pred EEECCeecCCCC---HH-------HHh---------ccceEEcCCCcc---------------------c----------
Q 011713 291 ILIDGLDICSMG---LK-------DLR---------TKLSIIPQEPTL---------------------F---------- 320 (479)
Q Consensus 291 I~i~g~~i~~~~---~~-------~lr---------~~i~~V~Q~~~l---------------------F---------- 320 (479)
|.+||.++..-+ +. ..| +.++|++|...+ |
T Consensus 702 I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~ 781 (972)
T 2r6f_A 702 IDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEV 781 (972)
T ss_dssp EEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTT
T ss_pred EEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccc
Confidence 788988875322 11 122 346888885321 1
Q ss_pred ---------------c-c--------cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccc-cccCCCCCCChhHH
Q 011713 321 ---------------R-G--------SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVGQR 375 (479)
Q Consensus 321 ---------------~-g--------Ti~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T-~vge~G~~LSgGQr 375 (479)
. - |+.||+.++.... ++.+ ..+.++.+ |+.. .++.....||||||
T Consensus 782 c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~--~~~~------~~~~L~~~--gL~~~~l~~~~~~LSGGek 851 (972)
T 2r6f_A 782 CHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIP--KIKR------KLETLYDV--GLGYMKLGQPATTLSGGEA 851 (972)
T ss_dssp TTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCH--HHHH------HHHHHHHT--TCSSSBTTCCGGGCCHHHH
T ss_pred cccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcch--hHHH------HHHHHHHc--CCCcccccCchhhCCHHHH
Confidence 0 1 2233332211110 1111 12344444 4554 56677789999999
Q ss_pred HHHHHHHHhhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcCCEEEEE------eCCEE
Q 011713 376 QLFCLGRVLLKRN---RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVL------SYGEL 445 (479)
Q Consensus 376 QRlaiARAll~~p---~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl------~~G~I 445 (479)
||++|||||+++| ++|||||||++||+.+...+.+.|+++. +++|+|+|||++..++.||+|++| ++|+|
T Consensus 852 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~I 931 (972)
T 2r6f_A 852 QRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQI 931 (972)
T ss_dssp HHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSE
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEE
Confidence 9999999999875 9999999999999999999999998864 589999999999999999999999 79999
Q ss_pred EEecChhhhhccCchHHH
Q 011713 446 VEYDLPSNLMKTNSAFSK 463 (479)
Q Consensus 446 ve~G~~~eLl~~~g~y~~ 463 (479)
++.|+++++.+....|..
T Consensus 932 v~~g~~~el~~~~~~~t~ 949 (972)
T 2r6f_A 932 VAVGTPEEVAEVKESHTG 949 (972)
T ss_dssp EEEESHHHHHTCTTCHHH
T ss_pred EEecCHHHHHhCchhHHH
Confidence 999999999986554543
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=8.8e-33 Score=303.23 Aligned_cols=217 Identities=24% Similarity=0.320 Sum_probs=156.1
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHh-----ccCC---CCCce------------
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF-----RLVE---PENGR------------ 290 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~-----g~~~---p~~G~------------ 290 (479)
..++++|++. .+|+||||+|++|+++||+|+||||||||+++|+ +.+. +..|.
T Consensus 646 ~~L~v~~l~~-------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 646 RQLTVVGARE-------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp SEEEEEEECS-------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred ceEEEecCcc-------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 3589999852 2699999999999999999999999999999864 2222 23443
Q ss_pred -EEECCeecCCCC---H-------HHHh---------ccceEEcCCCcc---------------------c---------
Q 011713 291 -ILIDGLDICSMG---L-------KDLR---------TKLSIIPQEPTL---------------------F--------- 320 (479)
Q Consensus 291 -I~i~g~~i~~~~---~-------~~lr---------~~i~~V~Q~~~l---------------------F--------- 320 (479)
|.+|+.++...+ + +..| +..+|++|...+ |
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 556666664221 1 1122 346788775321 0
Q ss_pred -----------------cccHHhh--------cCCCCCCCHHHHHHHHHHccHHHHHHhCCccccc-cccCCCCCCChhH
Q 011713 321 -----------------RGSVRTN--------LDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVGQ 374 (479)
Q Consensus 321 -----------------~gTi~eN--------i~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T-~vge~G~~LSgGQ 374 (479)
.-++.|| +.++.... ++.+ ..+.+..+ |+.. .++.....|||||
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~~--~~~~------~~~~L~~l--gL~~~~l~~~~~~LSGGe 868 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIA--GVHR------YLRTLVDV--GLGYVRLGQPAPTLSGGE 868 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTCH--HHHH------HHHHHHHT--TGGGSBTTCCGGGSCHHH
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcch--HHHH------HHHHHHHc--CCCcccccCccccCCHHH
Confidence 0123332 22111110 1111 12344444 4444 5677778999999
Q ss_pred HHHHHHHHHhhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcCCEEEEE------eCCE
Q 011713 375 RQLFCLGRVLLKRN---RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVL------SYGE 444 (479)
Q Consensus 375 rQRlaiARAll~~p---~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl------~~G~ 444 (479)
|||++|||||+++| ++|||||||++||+.+...+.+.|+++. .++|+|+|||++..++.||+|++| ++|+
T Consensus 869 kQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G~ 948 (993)
T 2ygr_A 869 AQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGT 948 (993)
T ss_dssp HHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCSE
T ss_pred HHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCCE
Confidence 99999999999875 9999999999999999999999998864 589999999999999999999999 6999
Q ss_pred EEEecChhhhhccCchHHHH
Q 011713 445 LVEYDLPSNLMKTNSAFSKL 464 (479)
Q Consensus 445 Ive~G~~~eLl~~~g~y~~l 464 (479)
|++.|+++++.+....|...
T Consensus 949 Iv~~G~~~el~~~~~~~t~~ 968 (993)
T 2ygr_A 949 VVAQGTPEDVAAVPASYTGK 968 (993)
T ss_dssp EEEEECHHHHHHCTTCHHHH
T ss_pred EEEecCHHHHHhCCHHHHHH
Confidence 99999999998865555443
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=8.2e-31 Score=260.51 Aligned_cols=201 Identities=16% Similarity=0.227 Sum_probs=145.7
Q ss_pred eeeEEeeCCcEEEEEcCCCCcHHHHHHHHhcc------------------------------------------------
Q 011713 252 GITCTFKEGTRVGVVGRTGSGKTTLISALFRL------------------------------------------------ 283 (479)
Q Consensus 252 ~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~------------------------------------------------ 283 (479)
++++++.+| .++|+|+||||||||++.|..+
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 578888999 9999999999999999999843
Q ss_pred --CCCCCceEEECCeecCCCCHHHHhccceEEcCCCccc-cccHHhhcCCCCCC----------------CHHHHHHHHH
Q 011713 284 --VEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLDPLGMY----------------SDNEIWEAME 344 (479)
Q Consensus 284 --~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF-~gTi~eNi~~~~~~----------------~~~~i~~a~~ 344 (479)
+.+.+|.+++||.+++..+...+...+++.||+..++ .|++.+|+...+.. +.+++.+.+.
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~~ 175 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFN 175 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3445689999999986666677777899999998765 88999988643210 0111222211
Q ss_pred Hc------------cH-HHHHHhCCccccccccC------CCCCCChhHHHHHHHHHHhh----cCCCEEEEeCCCCCCC
Q 011713 345 KC------------QL-KATISRLPMLLDSSVSD------EGENWSVGQRQLFCLGRVLL----KRNRILILDEATASID 401 (479)
Q Consensus 345 ~a------------~l-~~~i~~lp~G~~T~vge------~G~~LSgGQrQRlaiARAll----~~p~iliLDE~TSaLD 401 (479)
.. .+ ......++.|+++.++. ....||||||||++|||||. ++|++||||||||+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD 255 (322)
T 1e69_A 176 RFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLD 255 (322)
T ss_dssp HHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCC
T ss_pred HHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCC
Confidence 11 00 01113456677775442 24589999999999999996 7899999999999999
Q ss_pred HHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEE--EEEeCCEEE-EecChhh
Q 011713 402 SATDAILQRIIREEFPGSTVITIAHRVPTITDSDMV--MVLSYGELV-EYDLPSN 453 (479)
Q Consensus 402 ~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I--~vl~~G~Iv-e~G~~~e 453 (479)
+.+...+.+.+++..+++|+|+|||++..+..||++ ++|++|+.. ...+.++
T Consensus 256 ~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 256 DYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 999999999999987789999999999888899987 888888653 3334443
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.96 E-value=3.2e-32 Score=253.01 Aligned_cols=159 Identities=17% Similarity=0.150 Sum_probs=103.6
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhh
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN 327 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eN 327 (479)
.+|+|| ++||+++|+||||||||||+++|+|+ +|++|+|. +.++.. +...+|++++||||++ +||
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HHH
Confidence 489985 89999999999999999999999999 99999994 333331 2234688999999998 667
Q ss_pred c-CCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHH
Q 011713 328 L-DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDA 406 (479)
Q Consensus 328 i-~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~ 406 (479)
+ .+.... .+.+........+.+.++. |+ |||||++|||||+.+|++||||||||+ +..
T Consensus 79 l~~~~~~~-~~~~~~~~~~~~~~~~l~~---gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~ 137 (208)
T 3b85_A 79 IDPYLRPL-HDALRDMVEPEVIPKLMEA---GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPA 137 (208)
T ss_dssp -CTTTHHH-HHHHTTTSCTTHHHHHHHT---TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHH
T ss_pred HHHHHHHH-HHHHHHhccHHHHHHHHHh---CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHH
Confidence 6 321100 0000000001112223322 22 999999999999999999999999999 888
Q ss_pred HHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEE
Q 011713 407 ILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELV 446 (479)
Q Consensus 407 ~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Iv 446 (479)
.+.+.|+++.+++|+| +||+++.+. ++...++|...
T Consensus 138 ~l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~~~ 173 (208)
T 3b85_A 138 QMKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGLRL 173 (208)
T ss_dssp HHHHHHTTBCTTCEEE-EEEC---------------CCHH
T ss_pred HHHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcHHH
Confidence 8999998875578999 999988654 45556677543
No 69
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.95 E-value=7.8e-32 Score=252.96 Aligned_cols=165 Identities=12% Similarity=0.052 Sum_probs=123.4
Q ss_pred eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCH-HHHhccceEEcCCCccccc-----
Q 011713 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKLSIIPQEPTLFRG----- 322 (479)
Q Consensus 249 vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~-~~lr~~i~~V~Q~~~lF~g----- 322 (479)
.|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |+++...+. ...++.++|++|++.+|..
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 699999999999999999999999999999999999 6 99999 887755432 3457789999999877753
Q ss_pred ------cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHH-----HHHhhcCCCEE
Q 011713 323 ------SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL-----GRVLLKRNRIL 391 (479)
Q Consensus 323 ------Ti~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlai-----ARAll~~p~il 391 (479)
++.+|. ++ .+.+++.++++... ...++ ..|||||+||++| ||+++++|+++
T Consensus 88 ~~l~~~~~~~~~-~g--~~~~~i~~~l~~~~------------~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 88 DFLEYDNYANNF-YG--TLKSEYDKAKEQNK------------ICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp CEEEEEEETTEE-EE--EEHHHHHHHHHTTC------------EEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred chhhhhhccccc-CC--CcHHHHHHHHhCCC------------cEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 333331 11 23455666655432 12222 6799999999999 99999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeC
Q 011713 392 ILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSY 442 (479)
Q Consensus 392 iLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~ 442 (479)
+|||||+++|.++|..|++.+.+..+++| ++| +..||.|+|+++
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 99999999999999999999988777777 788 688999998865
No 70
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.95 E-value=2.2e-30 Score=257.58 Aligned_cols=141 Identities=21% Similarity=0.179 Sum_probs=118.8
Q ss_pred EEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEc
Q 011713 235 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP 314 (479)
Q Consensus 235 ~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~ 314 (479)
|++|+| | +++++++|+++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ ++....+|+.+++++
T Consensus 151 ~~~v~f-y----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~ 223 (330)
T 2pt7_A 151 YNLLDN-K----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFF 223 (330)
T ss_dssp TTTSTT-H----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEEC
T ss_pred cCchhh-H----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEe
Confidence 778888 7 358999999999999999999999999999999999999999999999975 333333455566553
Q ss_pred CCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEe
Q 011713 315 QEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILD 394 (479)
Q Consensus 315 Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLD 394 (479)
| |||+||++|||||.++|+++|||
T Consensus 224 -------------------------------------------g-------------gg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 224 -------------------------------------------G-------------GNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp -------------------------------------------B-------------TTBCHHHHHHHHTTSCCSEEEEC
T ss_pred -------------------------------------------C-------------CChhHHHHHHHHhhhCCCEEEEc
Confidence 0 89999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCc-EEEEEccCchhhhcCCEEEEEeCCEE
Q 011713 395 EATASIDSATDAILQRIIREEFPGS-TVITIAHRVPTITDSDMVMVLSYGEL 445 (479)
Q Consensus 395 E~TSaLD~~te~~i~~~l~~~~~~~-TvI~IaHrl~~i~~~D~I~vl~~G~I 445 (479)
|||+. .+.+.++.+..++ |+|+++|+++....||||++|++|+.
T Consensus 248 E~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 248 ELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp CCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred CCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 99992 2445565555554 79999999998899999999998863
No 71
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.95 E-value=3.5e-27 Score=237.92 Aligned_cols=82 Identities=18% Similarity=0.269 Sum_probs=75.4
Q ss_pred CCCCCChhHHHHHHHHHHhh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcCCEEE
Q 011713 366 EGENWSVGQRQLFCLGRVLL------KRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVM 438 (479)
Q Consensus 366 ~G~~LSgGQrQRlaiARAll------~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~ 438 (479)
....||||||||++|||||. .+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++....||+|+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~ 355 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKL 355 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEE
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE
Confidence 34579999999999999999 7999999999999999999999999998864 4799999999999988999999
Q ss_pred EEeCCEEEE
Q 011713 439 VLSYGELVE 447 (479)
Q Consensus 439 vl~~G~Ive 447 (479)
+|++|+|++
T Consensus 356 ~l~~G~i~~ 364 (365)
T 3qf7_A 356 RITGGVVVN 364 (365)
T ss_dssp EEETTEEC-
T ss_pred EEECCEEEe
Confidence 999999975
No 72
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.94 E-value=3.7e-29 Score=225.71 Aligned_cols=150 Identities=14% Similarity=0.149 Sum_probs=107.9
Q ss_pred eeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCc--cccccHHhhcC
Q 011713 252 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT--LFRGSVRTNLD 329 (479)
Q Consensus 252 ~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~--lF~gTi~eNi~ 329 (479)
||||++++||.++|+||||||||||++++.+ |...+ +.+.+| ++++|++. .+.++..+++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVL- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHH-
Confidence 6899999999999999999999999999653 22222 233444 66778753 2222222221
Q ss_pred CCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHH----
Q 011713 330 PLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATD---- 405 (479)
Q Consensus 330 ~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te---- 405 (479)
... ....+..|+.+.+... ...|||||||++||||+..+|++|+|||||++||+.++
T Consensus 63 ----------~~~--------~~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~ 123 (171)
T 4gp7_A 63 ----------HYI--------VSKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTD 123 (171)
T ss_dssp ----------HHH--------HHHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSS
T ss_pred ----------HHH--------HHHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccC
Confidence 111 1112234666555543 34599999999999999999999999999999999954
Q ss_pred ------------HHHHHHHHHHC-CCcEEEEEccCchhhhcCCEEE
Q 011713 406 ------------AILQRIIREEF-PGSTVITIAHRVPTITDSDMVM 438 (479)
Q Consensus 406 ------------~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~ 438 (479)
+.+.+.++++. ++.|+|+|||+++.+..++++.
T Consensus 124 ~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~~ 169 (171)
T 4gp7_A 124 RQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFER 169 (171)
T ss_dssp CCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEEE
T ss_pred CCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhcc
Confidence 67777765542 4899999999999998877653
No 73
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.94 E-value=5.3e-29 Score=225.87 Aligned_cols=147 Identities=14% Similarity=0.184 Sum_probs=110.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCCCCCHHHHHH
Q 011713 262 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWE 341 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~ 341 (479)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ |..+|+. .. .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~-~------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SS-K------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EE-T-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hh-h-------
Confidence 689999999999999999999995 677887765443225678999999987 4445552 10 0
Q ss_pred HHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHH-----hhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHH
Q 011713 342 AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV-----LLKRNRILILDE--ATASIDSATDAILQRIIRE 414 (479)
Q Consensus 342 a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA-----ll~~p~iliLDE--~TSaLD~~te~~i~~~l~~ 414 (479)
+ .+ .+..++..+.+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.+++
T Consensus 63 -----~-------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 63 -----F-------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp -----T-------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred -----c-------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 0 00 0134666778899999999999996 999999999999 9999999999999999876
Q ss_pred HCCCcEEEEEcc---Cchhhhc-CCEEEEEeCCEEEE
Q 011713 415 EFPGSTVITIAH---RVPTITD-SDMVMVLSYGELVE 447 (479)
Q Consensus 415 ~~~~~TvI~IaH---rl~~i~~-~D~I~vl~~G~Ive 447 (479)
.+.|+|+++| +...+.. ||+ .+|+|++
T Consensus 129 --~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 129 --PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp --TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred --CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 4677999996 5566554 666 5677776
No 74
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.93 E-value=9.7e-30 Score=261.52 Aligned_cols=194 Identities=14% Similarity=0.133 Sum_probs=157.2
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCe---ecCCCC-----
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL---DICSMG----- 302 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~---~i~~~~----- 302 (479)
..++++||++.|+.. ..+|+++ |+|++||+++|+||||||||||+++|+|+++|++|.|.++|. ++.++.
T Consensus 130 ~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 458999999999633 4599999 999999999999999999999999999999999999999998 565432
Q ss_pred HHHHhccceEEcCC-C-ccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccc-cccCCCCCCChhHHHHHH
Q 011713 303 LKDLRTKLSIIPQE-P-TLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 303 ~~~lr~~i~~V~Q~-~-~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T-~vge~G~~LSgGQrQRla 379 (479)
...+++.++||+|+ . ....-|+.+|+... .+.... .+.+. .+-+...+||+|| ||++
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~-----ae~~~~--------------~~~~v~~~ld~l~~lS~g~-qrvs 267 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRI-----AEDFRD--------------RGQHVLLIMDSLTRYAMAQ-REIA 267 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHH-----HHHHHT--------------TTCEEEEEEECHHHHHHHH-HHHH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHH-----HHHHHh--------------CCCCHHHHHHhHHHHHHHH-HHHH
Confidence 35688999999995 3 33455888887531 121110 01110 0113356899999 9999
Q ss_pred HHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC-----Cc-----EEEEEccCchhhhcCCEEEEEeCCEEEEec
Q 011713 380 LGRVLLKRNRILILDEATASIDSATDAILQRIIREEFP-----GS-----TVITIAHRVPTITDSDMVMVLSYGELVEYD 449 (479)
Q Consensus 380 iARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~-----~~-----TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G 449 (479)
|| +++|++ |++||+.+...+.+.+++..+ ++ |++++||+++ ...||++++|.+|+|+..|
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSR 337 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECH
T ss_pred HH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeC
Confidence 99 899998 999999999999999988755 54 9999999999 7789999999999999999
Q ss_pred Chhhhhc
Q 011713 450 LPSNLMK 456 (479)
Q Consensus 450 ~~~eLl~ 456 (479)
+++++..
T Consensus 338 ~~~~~~~ 344 (438)
T 2dpy_A 338 RLAEAGH 344 (438)
T ss_dssp HHHHTTC
T ss_pred CHHHccC
Confidence 9998864
No 75
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.93 E-value=2.8e-28 Score=247.77 Aligned_cols=167 Identities=16% Similarity=0.125 Sum_probs=133.4
Q ss_pred ceeeeeeEEeeCCc--------------------EEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHh
Q 011713 248 LVLKGITCTFKEGT--------------------RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR 307 (479)
Q Consensus 248 ~vL~~isl~i~~Ge--------------------~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr 307 (479)
.+|+||||++++|+ .+||+||||||||||+|+|+|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 48999999999999 99999999999999999999999999999999997753 2
Q ss_pred ccceEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChh--HHHHHHHHHHhh
Q 011713 308 TKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG--QRQLFCLGRVLL 385 (479)
Q Consensus 308 ~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgG--QrQRlaiARAll 385 (479)
.++++|++...+-|+.||+.++. ..+++.+.++..++.+ ++..+ . |||| ||||++||||+.
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~--~~~~~~~~L~~~~L~~--------~~~~~----~-lS~G~~~kqrv~la~aL~ 172 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGS--TNFPPDTYLEKMKFYE--------YDFFI----I-ISATRFKKNDIDIAKAIS 172 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGG--SSCCHHHHHHHTTGGG--------CSEEE----E-EESSCCCHHHHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccc--hHHHHHHHHHHcCCCc--------cCCeE----E-eCCCCccHHHHHHHHHHH
Confidence 27899998655679999986542 2345666777776532 23222 2 8999 999999999999
Q ss_pred c----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHC----------CCcEEEEEccCchh--hhc-CCEEE
Q 011713 386 K----------RNRILILDEATASIDSATDAILQRIIREEF----------PGSTVITIAHRVPT--ITD-SDMVM 438 (479)
Q Consensus 386 ~----------~p~iliLDE~TSaLD~~te~~i~~~l~~~~----------~~~TvI~IaHrl~~--i~~-~D~I~ 438 (479)
+ +|++++|||||++||+.+...+.+.+++.. ..+++++.||.++. ++. ||+|.
T Consensus 173 ~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 173 MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 9 999999999999999999888888887752 13567788998885 554 77764
No 76
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.92 E-value=1.2e-27 Score=214.95 Aligned_cols=111 Identities=17% Similarity=0.195 Sum_probs=90.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEECCeecCCCC---HHHHh-ccce----EEcCCCccccccHHhhcC
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMG---LKDLR-TKLS----IIPQEPTLFRGSVRTNLD 329 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~~p~---~G~I~i~g~~i~~~~---~~~lr-~~i~----~V~Q~~~lF~gTi~eNi~ 329 (479)
++++|||+||||||||+++|+|+|+|+ .|.|.+||.++.+++ .+++| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988887 77888 5788 899999988 322
Q ss_pred CCCCCCHHHHHHHHHHccHHHHHHh-CCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEE
Q 011713 330 PLGMYSDNEIWEAMEKCQLKATISR-LPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 391 (479)
Q Consensus 330 ~~~~~~~~~i~~a~~~a~l~~~i~~-lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~il 391 (479)
.+ ++. .+++++++.. +| ||||.|+|+ |||||||||+||||++++|++.
T Consensus 77 ----~~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 ----VS-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp ----CC-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred ----CC-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 11 222 7899999999 99 999999995 9999999999999999999873
No 77
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.91 E-value=1.1e-26 Score=224.38 Aligned_cols=150 Identities=17% Similarity=0.180 Sum_probs=98.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccc-cHHhhcCCCCCCCHHHHH
Q 011713 262 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIW 340 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~g-Ti~eNi~~~~~~~~~~i~ 340 (479)
++|||||||||||||+|+|+|++.|++|+|.++|.++.. ...++.+++++|++.++.. |+.||+.++.....++.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999988743 3456789999999998876 999999865432222222
Q ss_pred HHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcE
Q 011713 341 EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGST 420 (479)
Q Consensus 341 ~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~T 420 (479)
+.+......++...++ ..||||||||+++|||+.. +++|||||++||+.. ..+++.+.+ .++
T Consensus 81 ~~i~~~~~~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~~---~~~ 142 (270)
T 3sop_A 81 EPIEKYINEQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLSK---VVN 142 (270)
T ss_dssp HHHHHHHHHHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHHT---TSE
T ss_pred HHHHHHHHHHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHHh---cCc
Confidence 2222222234444333 2599999999999999875 999999999999986 344444443 389
Q ss_pred EEEEccCchhhh
Q 011713 421 VITIAHRVPTIT 432 (479)
Q Consensus 421 vI~IaHrl~~i~ 432 (479)
+|+|.|+..++.
T Consensus 143 vI~Vi~K~D~lt 154 (270)
T 3sop_A 143 IIPVIAKADTMT 154 (270)
T ss_dssp EEEEETTGGGSC
T ss_pred EEEEEeccccCC
Confidence 999999987764
No 78
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.91 E-value=8.6e-28 Score=236.76 Aligned_cols=174 Identities=13% Similarity=0.167 Sum_probs=130.0
Q ss_pred CccEEEEeEEEEeCCCCCceeeeeeEE-----------------------eeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 011713 230 HGRIELEDLKVRYRPNTPLVLKGITCT-----------------------FKEGTRVGVVGRTGSGKTTLISALFRLVEP 286 (479)
Q Consensus 230 ~~~I~~~~vsf~Y~~~~~~vL~~isl~-----------------------i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p 286 (479)
.+.|+++||++.|. |+++++++. +++|+.+||+||||||||||+++|+|+++|
T Consensus 41 ~~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 41 GEQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp TCCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34699999999994 477887775 899999999999999999999999999999
Q ss_pred CCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCC--CC----CHHHHHHHHHHccHHHHHHhCCcccc
Q 011713 287 ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG--MY----SDNEIWEAMEKCQLKATISRLPMLLD 360 (479)
Q Consensus 287 ~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~--~~----~~~~i~~a~~~a~l~~~i~~lp~G~~ 360 (479)
..|. +++++|+|++++|+.|++||+.+.. .. +.+.+. ++++.+..|+.
T Consensus 117 ~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~---------~~L~~l~~~~~ 170 (312)
T 3aez_A 117 WDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALM---------RFVTSVKSGSD 170 (312)
T ss_dssp STTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHH---------HHHHHHHTTCS
T ss_pred cCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHH---------HHHHHhCCCcc
Confidence 8664 4799999999999999999996422 11 223333 34444444443
Q ss_pred -ccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhh--hcCCEE
Q 011713 361 -SSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTI--TDSDMV 437 (479)
Q Consensus 361 -T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i--~~~D~I 437 (479)
..+ ..|||||+||+++|||++.+|+|||||||++.+|+.. ..+.+.. + .+|+|+|..+.. ...+|.
T Consensus 171 ~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~R~ 239 (312)
T 3aez_A 171 YACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVSRF 239 (312)
T ss_dssp CEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHHHH
T ss_pred cCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHHHH
Confidence 444 4799999999999999999999999999999998622 1233332 2 457777777653 235565
Q ss_pred EEEeCCE
Q 011713 438 MVLSYGE 444 (479)
Q Consensus 438 ~vl~~G~ 444 (479)
+.+.+|+
T Consensus 240 ~~~rd~~ 246 (312)
T 3aez_A 240 LAMRTTA 246 (312)
T ss_dssp HHHTTTG
T ss_pred HHHHhcc
Confidence 5555544
No 79
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.90 E-value=4.9e-28 Score=232.75 Aligned_cols=184 Identities=18% Similarity=0.159 Sum_probs=149.4
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCC-CceEEECCeecCCCCHHHHhccce
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGLDICSMGLKDLRTKLS 311 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~-~G~I~i~g~~i~~~~~~~lr~~i~ 311 (479)
++++|++|. ++|+|+| +++|+.++|+||||||||||+++|+|+++|+ +|+|.++|.++..+. +..++
T Consensus 6 ~~l~~l~~~------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~ 73 (261)
T 2eyu_A 6 PEFKKLGLP------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKS 73 (261)
T ss_dssp CCGGGSSCC------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSS
T ss_pred CChHHCCCH------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcce
Confidence 345566542 4899999 9999999999999999999999999999998 999999999886543 45578
Q ss_pred EEcC-----CCccccccHHhhcCCCCCC-------CHHHHHHHHHHcc-----------------HHHHH----------
Q 011713 312 IIPQ-----EPTLFRGSVRTNLDPLGMY-------SDNEIWEAMEKCQ-----------------LKATI---------- 352 (479)
Q Consensus 312 ~V~Q-----~~~lF~gTi~eNi~~~~~~-------~~~~i~~a~~~a~-----------------l~~~i---------- 352 (479)
+++| ++..|..+|+.++...++. +.+.++.+++.+. ++..+
T Consensus 74 ~v~q~~~gl~~~~l~~~la~aL~~~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~ 153 (261)
T 2eyu_A 74 IVNQREVGEDTKSFADALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQ 153 (261)
T ss_dssp EEEEEEBTTTBSCHHHHHHHHHHHCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHH
T ss_pred eeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccch
Confidence 8888 6667788888888543332 6666666666542 12221
Q ss_pred --HhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCE--EEEeCCCCCCCHHH---------HHHHHHHHHHHCCCc
Q 011713 353 --SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI--LILDEATASIDSAT---------DAILQRIIREEFPGS 419 (479)
Q Consensus 353 --~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~i--liLDE~TSaLD~~t---------e~~i~~~l~~~~~~~ 419 (479)
..+++++++.|++++..+|+| ||+++||+++.+|++ +|+||+||++|... +..++++++...+|+
T Consensus 154 ~~~~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~ 231 (261)
T 2eyu_A 154 VRIVLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGL 231 (261)
T ss_dssp HHHHHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCC
Confidence 235678999999999999999 999999999999999 99999999999873 457888888888999
Q ss_pred EEEEEccCchh
Q 011713 420 TVITIAHRVPT 430 (479)
Q Consensus 420 TvI~IaHrl~~ 430 (479)
|.+.++||++.
T Consensus 232 t~~~~a~r~~~ 242 (261)
T 2eyu_A 232 ITLEDAMEASP 242 (261)
T ss_dssp SCHHHHHHHCS
T ss_pred CCHHHHHHHhC
Confidence 99999999873
No 80
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.90 E-value=2e-26 Score=225.95 Aligned_cols=173 Identities=20% Similarity=0.215 Sum_probs=126.2
Q ss_pred eeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCC----HHHH--hccceEEcCCCc-ccc-c
Q 011713 251 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKDL--RTKLSIIPQEPT-LFR-G 322 (479)
Q Consensus 251 ~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~----~~~l--r~~i~~V~Q~~~-lF~-g 322 (479)
+++||++++|+.++|||||||||||+++.|+|++.|++|+|.++|.|+.... +..| |..+++|+|++. ++. .
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4578899999999999999999999999999999999999999999987653 2334 457999999997 665 4
Q ss_pred cHHhhcCCCC--CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCC--EEEEeCCCC
Q 011713 323 SVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR--ILILDEATA 398 (479)
Q Consensus 323 Ti~eNi~~~~--~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~--iliLDE~TS 398 (479)
|++||+.+.. ..+ . ..++.+|+.+. .+..+ ..|| |||++||||+..+|+ +|+|| ||+
T Consensus 171 ~v~e~l~~~~~~~~d-~---~lldt~gl~~~-------~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYD-V---VLCDTSGRLHT-------NYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHTTCS-E---EEECCCCCSSC-------CHHHH----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHcCCc-c---hHHhcCCCCcc-------hhHHH----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 8999985321 110 0 11122222111 11122 2378 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEEcc---------Cchhhh-cCCEEEEEeCCEEE
Q 011713 399 SIDSATDAILQRIIREEFPGSTVITIAH---------RVPTIT-DSDMVMVLSYGELV 446 (479)
Q Consensus 399 aLD~~te~~i~~~l~~~~~~~TvI~IaH---------rl~~i~-~~D~I~vl~~G~Iv 446 (479)
++|+.+.. +.+.+. .+.|+|++|| .++.+. ..+.|.++..|+.+
T Consensus 232 glD~~~~~---~~~~~~-~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 232 GLNMLPQA---REFNEV-VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGGHHHH---HHHHHH-TCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CcCHHHHH---HHHHHh-cCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 99998653 223322 3789999999 444443 46899999999754
No 81
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.90 E-value=1.4e-27 Score=241.11 Aligned_cols=175 Identities=18% Similarity=0.156 Sum_probs=147.7
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCC-CceEEECCeecCCCCHHHHhccceEEcC-----CCcccc
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGLDICSMGLKDLRTKLSIIPQ-----EPTLFR 321 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~-~G~I~i~g~~i~~~~~~~lr~~i~~V~Q-----~~~lF~ 321 (479)
++|++++ +++|+.++|+|||||||||++++|+|+++|+ +|+|.+.|.++. + .+|+.+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3677765 8999999999999999999999999999998 899988776664 2 36788999999 899999
Q ss_pred ccHHhhcCCCCCC-------CHHHHHHHHHHccH-----------------HHHH------------HhCCccccccccC
Q 011713 322 GSVRTNLDPLGMY-------SDNEIWEAMEKCQL-----------------KATI------------SRLPMLLDSSVSD 365 (479)
Q Consensus 322 gTi~eNi~~~~~~-------~~~~i~~a~~~a~l-----------------~~~i------------~~lp~G~~T~vge 365 (479)
++|++||...++. +++.++.+++.++. +..+ ..+++++++.|++
T Consensus 200 ~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~q 279 (372)
T 2ewv_A 200 DALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 279 (372)
T ss_dssp HHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEE
Confidence 9999999865544 67778888887653 1221 1246799999999
Q ss_pred CCCCCChhHHHHHHHHHHhhcCCCE--EEEeCCCCCCCHH----H-----HHHHHHHHHHHCCCcEEEEEccCchh
Q 011713 366 EGENWSVGQRQLFCLGRVLLKRNRI--LILDEATASIDSA----T-----DAILQRIIREEFPGSTVITIAHRVPT 430 (479)
Q Consensus 366 ~G~~LSgGQrQRlaiARAll~~p~i--liLDE~TSaLD~~----t-----e~~i~~~l~~~~~~~TvI~IaHrl~~ 430 (479)
++..+||| ||+++||+++.+|+| +|+||+||+||.. + +..++++++...+|+|.+.++||++.
T Consensus 280 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 280 RLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 99999999 899999999999999 9999999999975 3 44678888888899999999999984
No 82
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.90 E-value=1.7e-23 Score=209.29 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=76.7
Q ss_pred CCChhHHHHHHHHHHhh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEE
Q 011713 369 NWSVGQRQLFCLGRVLL---------KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMV 439 (479)
Q Consensus 369 ~LSgGQrQRlaiARAll---------~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~v 439 (479)
.|||||+||++|||+|. .+|||||||||||+||+.....+.+.+.+.. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998864 89999999 444 8999999
Q ss_pred EeCCEEEEecChhhhhc
Q 011713 440 LSYGELVEYDLPSNLMK 456 (479)
Q Consensus 440 l~~G~Ive~G~~~eLl~ 456 (479)
|++|+|++.|+++++.+
T Consensus 340 l~~G~i~~~g~~~~~~~ 356 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQAE 356 (359)
T ss_dssp EETTEEEECCCTTTSCT
T ss_pred EECCEEEecCCHHHHhc
Confidence 99999999999998843
No 83
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.89 E-value=3.7e-26 Score=212.46 Aligned_cols=169 Identities=14% Similarity=0.080 Sum_probs=112.5
Q ss_pred CCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccc-c
Q 011713 245 NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-S 323 (479)
Q Consensus 245 ~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~g-T 323 (479)
+..++|+| .+|++||+++|+||||||||||+++|+|+++ .|.+++.....-.....++.++|++|++.+|.. |
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 80 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLI 80 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHH
Confidence 34568999 7999999999999999999999999999996 355554222111112346789999999988865 6
Q ss_pred HHhhcCC----CC-----CCCHHHHHHH----------HHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 324 VRTNLDP----LG-----MYSDNEIWEA----------MEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 324 i~eNi~~----~~-----~~~~~~i~~a----------~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
+.+|+.. .. ..+.+++.+. ++..++.++....|. .|| ||
T Consensus 81 ~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----------~lS-----------~l 138 (207)
T 1znw_A 81 DQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE-----------AVT-----------VF 138 (207)
T ss_dssp HTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT-----------SEE-----------EE
T ss_pred hcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC-----------cEE-----------EE
Confidence 6677631 11 1223333333 334455555555553 234 89
Q ss_pred hcCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHC--CCcEEEEEccCchhhhc-CCEEEEEe
Q 011713 385 LKRNRILILDEATASI----DSATDAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLS 441 (479)
Q Consensus 385 l~~p~iliLDE~TSaL----D~~te~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-~D~I~vl~ 441 (479)
+.+|++++|||||+++ |+.+.+.+.+.++++. .++|+|+|||+++.+.. ||+|++|.
T Consensus 139 ~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 139 LAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp EECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred EECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 9999999999999998 6778888888888764 37899999999998764 99999984
No 84
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.89 E-value=1.7e-25 Score=204.56 Aligned_cols=172 Identities=16% Similarity=0.195 Sum_probs=131.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCCCCCHHHH
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEI 339 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i 339 (479)
|++++|+||||||||||+++|+|+++ ++| |.+||.+..++. .+++++++++|+. .++ ++|+.... ...+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~-~~~~-- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVG-LEPP-- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECC-CCCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhccc-ccCC--
Confidence 78999999999999999999999999 999 999999986654 5789999999986 454 45553211 0000
Q ss_pred HHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHH-HHHH---HhhcCCCEEEEeC--CCCCCCHHHHHHHHHHHH
Q 011713 340 WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF-CLGR---VLLKRNRILILDE--ATASIDSATDAILQRIIR 413 (479)
Q Consensus 340 ~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRl-aiAR---All~~p~iliLDE--~TSaLD~~te~~i~~~l~ 413 (479)
+...+.++|+.|..+|+|||+++ +++| |+.++|++||||| ||..+|+..-+.+.+.++
T Consensus 70 ----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 70 ----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp ----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 11234488999999999999999 5566 7899999999999 898899988777777776
Q ss_pred HHCCCcEEEE--E--ccCchhhhcCCEEEEEeCCEEEEecChhhhhccCchHHHHHH
Q 011713 414 EEFPGSTVIT--I--AHRVPTITDSDMVMVLSYGELVEYDLPSNLMKTNSAFSKLVA 466 (479)
Q Consensus 414 ~~~~~~TvI~--I--aHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~~~g~y~~l~~ 466 (479)
. .+|+|+ | +||.+ ...+|+|..+++|+|++-... +++..|.++++
T Consensus 134 ~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~~~----nr~~~~~~i~~ 182 (189)
T 2i3b_A 134 T---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVTKE----NRNHLLPDIVT 182 (189)
T ss_dssp C---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECCSS----SGGGHHHHHHH
T ss_pred C---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeChH----hHHHHHHHHHH
Confidence 3 345553 3 49886 567899999999999985431 24455555554
No 85
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.89 E-value=2.5e-25 Score=222.26 Aligned_cols=173 Identities=20% Similarity=0.215 Sum_probs=127.3
Q ss_pred eeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCC----HHHH--hccceEEcCCCc-ccc-c
Q 011713 251 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKDL--RTKLSIIPQEPT-LFR-G 322 (479)
Q Consensus 251 ~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~----~~~l--r~~i~~V~Q~~~-lF~-g 322 (479)
+++||++++|+.++|||||||||||+++.|+|++.|++|+|.++|.|+.... +..| |..|++++|++. ++. .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578899999999999999999999999999999999999999999986643 2333 567999999987 654 5
Q ss_pred cHHhhcCCCC--CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCC--EEEEeCCCC
Q 011713 323 SVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR--ILILDEATA 398 (479)
Q Consensus 323 Ti~eNi~~~~--~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~--iliLDE~TS 398 (479)
|++||+.+.. ..+ . ..++.+|+.+. .+..+ ..|| |||++||||+..+|+ +|+|| ||+
T Consensus 228 tv~e~l~~~~~~~~d-~---~lldt~Gl~~~-------~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-ptt 288 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD-V---VLCDTSGRLHT-------NYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNT 288 (359)
T ss_dssp HHHHHHHHHHHTTCS-E---EEEECCCCSSC-------CHHHH----HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGG
T ss_pred hHHHHHHHHHhCCCH-H---HHHHhcCCChh-------hhhHH----HHHH---HHHHHHHHHHhcCCCceEEEEc-CCC
Confidence 8999986321 111 0 11122222111 11112 2377 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEEcc---------Cchhhh-cCCEEEEEeCCEEE
Q 011713 399 SIDSATDAILQRIIREEFPGSTVITIAH---------RVPTIT-DSDMVMVLSYGELV 446 (479)
Q Consensus 399 aLD~~te~~i~~~l~~~~~~~TvI~IaH---------rl~~i~-~~D~I~vl~~G~Iv 446 (479)
++|+.+.. +.+.+. .+.|+|++|| .++.+. ..+.|..+..|+.+
T Consensus 289 glD~~~~~---~~~~~~-~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 289 GLNMLPQA---REFNEV-VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp GGGGHHHH---HHHHHH-TCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CCCHHHHH---HHHHHh-cCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 99998653 223322 3789999999 344443 46899999999743
No 86
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.88 E-value=1.1e-24 Score=217.41 Aligned_cols=195 Identities=13% Similarity=0.101 Sum_probs=149.0
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCC-------CH
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM-------GL 303 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~-------~~ 303 (479)
.-++.+++++.|+.. ..+|+++ |+|.+||+++|+|+||||||||+++|+|+.+|+.|.|.+.|.+.+++ ..
T Consensus 44 ~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp CSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 358899999999633 4599999 99999999999999999999999999999999999999999652211 11
Q ss_pred HHHhccceEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccc-cCCCCCCChhHHHHHHHHH
Q 011713 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSV-SDEGENWSVGQRQLFCLGR 382 (479)
Q Consensus 304 ~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~v-ge~G~~LSgGQrQRlaiAR 382 (479)
..+++.+.+++|.. ....+++..+.....+.++... .|.+..+ -+.-.+||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~---------------~~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la- 182 (347)
T 2obl_A 122 STLSKCVLVVTTSD---------------RPALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA- 182 (347)
T ss_dssp HHHTTEEEEEECTT---------------SCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH-
T ss_pred hhhhceEEEEECCC---------------CCHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH-
Confidence 22333344444321 1124556666666666665443 3433211 13456899999 999999
Q ss_pred HhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC---CCc-----EEEEEccCchhhhcCCEEEEEeCCEEEEecChhhh
Q 011713 383 VLLKRNRILILDEATASIDSATDAILQRIIREEF---PGS-----TVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 383 All~~p~iliLDE~TSaLD~~te~~i~~~l~~~~---~~~-----TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eL 454 (479)
+.+|++ |+++|+.....+.+.+++.. +|. |++++||+++ -.-||+++++.+|+|+..|+.+++
T Consensus 183 --l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 183 --SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp --TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred --cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence 688988 99999999999999998864 366 8999999999 666999999999999999998887
Q ss_pred h
Q 011713 455 M 455 (479)
Q Consensus 455 l 455 (479)
.
T Consensus 254 ~ 254 (347)
T 2obl_A 254 N 254 (347)
T ss_dssp T
T ss_pred C
Confidence 4
No 87
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.88 E-value=1.1e-26 Score=214.45 Aligned_cols=159 Identities=14% Similarity=0.142 Sum_probs=127.5
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhccCC-------------CCCceEEECCeecCCCCHHHHhccceEEcCCCcccccc
Q 011713 257 FKEGTRVGVVGRTGSGKTTLISALFRLVE-------------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGS 323 (479)
Q Consensus 257 i~~Ge~vaivG~sGsGKSTL~~lL~g~~~-------------p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gT 323 (479)
+++|++++|+||||||||||+++|+|+|+ |..|+ ++|.++..++.+.+|+.+ +|++++|.+|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999997 88998 599999999999999986 7999999999
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHH-HhhcCCCEEEEeCCCCCCCH
Q 011713 324 VRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR-VLLKRNRILILDEATASIDS 402 (479)
Q Consensus 324 i~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiAR-All~~p~iliLDE~TSaLD~ 402 (479)
+.+|+ ++ .++++++++++.....-+ .-.|+|+++.... ++ .|| +++++|++++|||+|+++|.
T Consensus 76 ~~~n~-~g--~~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 76 FSGNL-YG--TSKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp ETTEE-EE--EEHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred ecCcc-CC--CCHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 99998 43 367889999886432111 2246777776431 12 677 89999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeC
Q 011713 403 ATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSY 442 (479)
Q Consensus 403 ~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~ 442 (479)
++|+.|++.|.+..++ +.++| ++ ..+|+|+|+++
T Consensus 140 ~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 140 ETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp SCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 9999999999876544 46678 55 88999999875
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.87 E-value=2.3e-24 Score=227.85 Aligned_cols=172 Identities=19% Similarity=0.139 Sum_probs=123.2
Q ss_pred EeCCCCCceeeeeeE-EeeCCcEEEEEcCCCCcHHHHHHH--HhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCC
Q 011713 241 RYRPNTPLVLKGITC-TFKEGTRVGVVGRTGSGKTTLISA--LFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 317 (479)
Q Consensus 241 ~Y~~~~~~vL~~isl-~i~~Ge~vaivG~sGsGKSTL~~l--L~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~ 317 (479)
+|+.. .++|+|||+ .|++|+.++|+||||||||||+++ +.|+++|.+|.|+++|.+. .......++.+++++|++
T Consensus 20 ~~~~g-~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~ 97 (525)
T 1tf7_A 20 KMRTM-IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKL 97 (525)
T ss_dssp EECCC-CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHH
T ss_pred cccCC-chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHh
Confidence 34433 459999999 999999999999999999999999 6799999999999999873 223445667899999997
Q ss_pred ccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 011713 318 TLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (479)
Q Consensus 318 ~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~T 397 (479)
... +|+.......+++.+++++..++.++..+.| ..|||| +|++++|||||
T Consensus 98 ~~~-----~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~g-------------~~~~lilDe~t 148 (525)
T 1tf7_A 98 VDE-----GKLFILDASPDPEGQEVVGGFDLSALIERIN-----------YAIQKY-------------RARRVSIDSVT 148 (525)
T ss_dssp HHT-----TSEEEEECCCCSSCCSCCSSHHHHHHHHHHH-----------HHHHHH-------------TCSEEEEECST
T ss_pred hcc-----CcEEEEecCcccchhhhhcccCHHHHHHHHH-----------HHHHHc-------------CCCEEEECCHH
Confidence 632 2232110000011112233333433333332 234555 58899999999
Q ss_pred CC-----CCHHHHHHHHHHHHHHC-CCcEEEEEccCchhh---------hc-CCEEEEEeCC
Q 011713 398 AS-----IDSATDAILQRIIREEF-PGSTVITIAHRVPTI---------TD-SDMVMVLSYG 443 (479)
Q Consensus 398 Sa-----LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i---------~~-~D~I~vl~~G 443 (479)
+. +|+...+.+.+.++.+. .++|+|+|+|+++.+ .. ||+|++|++|
T Consensus 149 ~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 149 SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp TTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 84 58888888888887764 489999999999874 44 9999999983
No 89
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.85 E-value=9.9e-22 Score=216.63 Aligned_cols=167 Identities=20% Similarity=0.221 Sum_probs=121.2
Q ss_pred HHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCc
Q 011713 278 SALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPM 357 (479)
Q Consensus 278 ~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~ 357 (479)
.+.-+.+.|+.|+|+++|.++.++....+.+.++++.+-. -+..++. --.++.+..+. ..+++..+
T Consensus 386 ~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~----l~~~~~~------~~~~~~~~~~~--~~~~L~~v-- 451 (916)
T 3pih_A 386 VCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLN----LTERERE------IVGELLKEIEK--RLEFLVDV-- 451 (916)
T ss_dssp TTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCC----CCTTTTT------THHHHHHHHHH--HHHHHHTT--
T ss_pred hcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhcc----CcHHHHH------HHHhhHHHHHH--HHHHHHHc--
Confidence 3445677899999999999987655444455555433211 0111111 01111111111 12334443
Q ss_pred ccccc-ccCCCCCCChhHHHHHHHHHHhhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEccCchhhhc
Q 011713 358 LLDSS-VSDEGENWSVGQRQLFCLGRVLLKRNR--ILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITD 433 (479)
Q Consensus 358 G~~T~-vge~G~~LSgGQrQRlaiARAll~~p~--iliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaHrl~~i~~ 433 (479)
|++.. .......||||||||++|||||.++|+ +|||||||++||+.....+.+.|+++.. ++|+|+|+|++..+..
T Consensus 452 gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~ 531 (916)
T 3pih_A 452 GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRN 531 (916)
T ss_dssp TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHT
T ss_pred CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 44322 344456899999999999999999887 9999999999999999999999998753 8999999999999999
Q ss_pred CCEEEEE------eCCEEEEecChhhhhccC
Q 011713 434 SDMVMVL------SYGELVEYDLPSNLMKTN 458 (479)
Q Consensus 434 ~D~I~vl------~~G~Ive~G~~~eLl~~~ 458 (479)
||+|++| ++|+|+..|+++++++..
T Consensus 532 aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 532 ADHIIDIGPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp CSEEEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred CCEEEEEcCCcccCCCEEEEeechhhhhcCc
Confidence 9999999 999999999999998753
No 90
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.85 E-value=2.2e-21 Score=204.58 Aligned_cols=76 Identities=13% Similarity=0.104 Sum_probs=71.1
Q ss_pred CC-ChhHHHHHHHHHHhhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCE
Q 011713 369 NW-SVGQRQLFCLGRVLLKRN--RILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGE 444 (479)
Q Consensus 369 ~L-SgGQrQRlaiARAll~~p--~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~ 444 (479)
.| ||||+||++||||++.+| ++|||||||++||+.+...|.+.|+++.+++|+|+|||++..+..||++++|++|.
T Consensus 396 ~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~~ 474 (517)
T 4ad8_A 396 DVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQV 474 (517)
T ss_dssp SSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECCE
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 45 999999999999999999 99999999999999999999999998877899999999999999999999996553
No 91
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.85 E-value=4.3e-22 Score=195.24 Aligned_cols=181 Identities=13% Similarity=0.107 Sum_probs=122.4
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCc-eEEECCeecCCCCHHHHhccceEEcCCCccccccHHh
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G-~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~e 326 (479)
++|+++++.+++|+.++|+||||||||||++.|++.+.|++| .|.+.+.+ .+...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 379999999999999999999999999999999999999988 77665433 4566777776666555432 2223
Q ss_pred hcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhH-HHHHHHHHHhhcCCCEEEEeCCCC---C---
Q 011713 327 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ-RQLFCLGRVLLKRNRILILDEATA---S--- 399 (479)
Q Consensus 327 Ni~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQ-rQRlaiARAll~~p~iliLDE~TS---a--- 399 (479)
|+..+ ..++++..++++. .+...+-+ +.+....+|.+| +||+. |+++..+|+++|+||||+ +
T Consensus 97 ~l~~~-~~~~~~~~~~~~~-----~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 97 SLKRE-IIENGKFDQWFDE-----LFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHHH-HHHHTHHHHHHHH-----HHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred ccccC-CCCHHHHHHHHHH-----HhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 33211 1123333332221 22222222 223224688999 67777 999999999999999999 4
Q ss_pred CCH-HHHHHHHHHHHHHCC--CcEEEEEccCc--h--------------------hhh-cCCEEEEEeCCEE
Q 011713 400 IDS-ATDAILQRIIREEFP--GSTVITIAHRV--P--------------------TIT-DSDMVMVLSYGEL 445 (479)
Q Consensus 400 LD~-~te~~i~~~l~~~~~--~~TvI~IaHrl--~--------------------~i~-~~D~I~vl~~G~I 445 (479)
+|. .....+.+.|+++.+ ++|+|+++|.. . .+. .||+|++|++|+.
T Consensus 166 ~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 344 444677777776542 89999999995 3 444 5999999999875
No 92
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.85 E-value=1.7e-20 Score=187.37 Aligned_cols=74 Identities=26% Similarity=0.278 Sum_probs=67.3
Q ss_pred CCCChhHHH------HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcCCEEEEE
Q 011713 368 ENWSVGQRQ------LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVL 440 (479)
Q Consensus 368 ~~LSgGQrQ------RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl 440 (479)
..||||||| |+++|||++.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+......||+|++|
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~l 326 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRI 326 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEEE
Confidence 569999999 6788899999999999999999999999999999998754 468999999998888889999998
Q ss_pred e
Q 011713 441 S 441 (479)
Q Consensus 441 ~ 441 (479)
+
T Consensus 327 ~ 327 (339)
T 3qkt_A 327 S 327 (339)
T ss_dssp E
T ss_pred E
Confidence 5
No 93
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.85 E-value=1.5e-23 Score=211.71 Aligned_cols=147 Identities=15% Similarity=0.193 Sum_probs=109.6
Q ss_pred eeeeeeEEeeC--CcEEEEEcCCCCcHHHHHHHHhccCCCCC----ceEEE----CCeecCCCCHHHHhccceEEcCCCc
Q 011713 249 VLKGITCTFKE--GTRVGVVGRTGSGKTTLISALFRLVEPEN----GRILI----DGLDICSMGLKDLRTKLSIIPQEPT 318 (479)
Q Consensus 249 vL~~isl~i~~--Ge~vaivG~sGsGKSTL~~lL~g~~~p~~----G~I~i----~g~~i~~~~~~~lr~~i~~V~Q~~~ 318 (479)
+.+.|++++++ |++++|+|+||||||||+++|+|+|+|++ |+|++ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45689999999 99999999999999999999999999999 99987 46665 5666666 56999999999
Q ss_pred cccccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCcc--ccc--------cccCCCCCCChhHHHHHHHHHHh---
Q 011713 319 LFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPML--LDS--------SVSDEGENWSVGQRQLFCLGRVL--- 384 (479)
Q Consensus 319 lF~gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G--~~T--------~vge~G~~LSgGQrQRlaiARAl--- 384 (479)
+|.+|++|||.++. +..+...+..+...+...++..++.+ ++. +..++|.++|+||+||++++|+|
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l 314 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKL 314 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHH
T ss_pred HHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHH
Confidence 99999999997643 33455566665555556666666544 443 23367788899999999999998
Q ss_pred hc--CCCEEEEeCCC
Q 011713 385 LK--RNRILILDEAT 397 (479)
Q Consensus 385 l~--~p~iliLDE~T 397 (479)
++ +++++++||||
T Consensus 315 ~~~~~~~ililde~~ 329 (365)
T 1lw7_A 315 LDKYKVPYIEIESPS 329 (365)
T ss_dssp HHGGGCCCEEEECSS
T ss_pred HHHcCCCEEEeCCCC
Confidence 77 78999999986
No 94
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.84 E-value=1.8e-21 Score=212.89 Aligned_cols=180 Identities=17% Similarity=0.213 Sum_probs=134.9
Q ss_pred CCCCcHHHHHHHHhcc---------CCCCCceEEECCeecCC---CCHHHHhccceEEcCCCccccccHHhhcCCCCCCC
Q 011713 268 RTGSGKTTLISALFRL---------VEPENGRILIDGLDICS---MGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYS 335 (479)
Q Consensus 268 ~sGsGKSTL~~lL~g~---------~~p~~G~I~i~g~~i~~---~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~~~ 335 (479)
.|..||+++.+.+... |.|..|+|.++|.+|.+ ++..++...+.-++|++..+. | +...+.. .
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~~--~ 344 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGH-A--ERVKNRP--E 344 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCS-T--TSSSSCS--S
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcc-c--chhhcch--h
Confidence 4667899998887662 45688999999999988 666776666666666665332 2 2222211 1
Q ss_pred HHHHH-----HHHHHccHHHHHHhCCcccccc-ccCCCCCCChhHHHHHHHHHHhhcCC--CEEEEeCCCCCCCHHHHHH
Q 011713 336 DNEIW-----EAMEKCQLKATISRLPMLLDSS-VSDEGENWSVGQRQLFCLGRVLLKRN--RILILDEATASIDSATDAI 407 (479)
Q Consensus 336 ~~~i~-----~a~~~a~l~~~i~~lp~G~~T~-vge~G~~LSgGQrQRlaiARAll~~p--~iliLDE~TSaLD~~te~~ 407 (479)
+.++. ++.+... ++..+ |++.. ++..-..|||||||||+|||||.++| .+|||||||++||+...+.
T Consensus 345 ~~~i~~~i~~ei~~rl~---~L~~v--GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~ 419 (842)
T 2vf7_A 345 QAIALQRMAADLVKRLD---VLLHL--GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEA 419 (842)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHT--TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHH
T ss_pred hHHHHHHHHHHHHHHHH---HHHhC--CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHH
Confidence 11111 2222221 33333 44432 45555689999999999999999999 5999999999999999999
Q ss_pred HHHHHHHHC-CCcEEEEEccCchhhhcCCEEEEE------eCCEEEEecChhhhhcc
Q 011713 408 LQRIIREEF-PGSTVITIAHRVPTITDSDMVMVL------SYGELVEYDLPSNLMKT 457 (479)
Q Consensus 408 i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl------~~G~Ive~G~~~eLl~~ 457 (479)
+.+.|+++. .+.|+|+|+||+..+..||+|++| ++|+++..|+++++++.
T Consensus 420 L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 420 LLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp HHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred HHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence 999888764 489999999999999999999999 79999999999999875
No 95
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.83 E-value=2.1e-21 Score=217.52 Aligned_cols=170 Identities=16% Similarity=0.142 Sum_probs=122.1
Q ss_pred ccEEEEe-----EEEEeCCCCCceeeeeeEEeeC-------CcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeec
Q 011713 231 GRIELED-----LKVRYRPNTPLVLKGITCTFKE-------GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI 298 (479)
Q Consensus 231 ~~I~~~~-----vsf~Y~~~~~~vL~~isl~i~~-------Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i 298 (479)
+.|+++| |++.|+++ .++++|++|++++ |+.++|+|||||||||+++.+ |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------ 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------ 814 (1022)
T ss_dssp CCEEEEEECCCC------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred ceEEEEeccccEEEEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence 3599999 99999533 4699999999987 999999999999999999999 99863
Q ss_pred CCCCHHHHhccce-EEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHH
Q 011713 299 CSMGLKDLRTKLS-IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 299 ~~~~~~~lr~~i~-~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
+.++| ||||++. .-|+.|||... .|+.+.+. .|. ..+|+++++
T Consensus 815 --------~aqiG~~Vpq~~~--~l~v~d~I~~r--------------ig~~d~~~---~~~--------stf~~em~~- 858 (1022)
T 2o8b_B 815 --------MAQMGCYVPAEVC--RLTPIDRVFTR--------------LGASDRIM---SGE--------STFFVELSE- 858 (1022)
T ss_dssp --------HHTTTCCEESSEE--EECCCSBEEEE--------------CC--------------------CHHHHHHHH-
T ss_pred --------HhheeEEeccCcC--CCCHHHHHHHH--------------cCCHHHHh---hch--------hhhHHHHHH-
Confidence 34666 9999984 55788887411 12222221 122 346766664
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHC-C-CcEEEEEccCchhhhc-CCEEEEEeCCEEE--EecCh
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSAT-DAILQRIIREEF-P-GSTVITIAHRVPTITD-SDMVMVLSYGELV--EYDLP 451 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~t-e~~i~~~l~~~~-~-~~TvI~IaHrl~~i~~-~D~I~vl~~G~Iv--e~G~~ 451 (479)
+++||++..+|+++||||||+++|+.. ...+.+.++.+. + ++|+|++||.++.+.. ||++.|+ +|++. +.|+.
T Consensus 859 ~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 859 TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENEC 937 (1022)
T ss_dssp HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-----
T ss_pred HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCc
Confidence 999999999999999999999999987 455666666654 3 7999999999998765 8998886 58887 55543
No 96
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.83 E-value=8.9e-24 Score=196.67 Aligned_cols=143 Identities=16% Similarity=0.211 Sum_probs=109.2
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccc---cHHhhcC--CC
Q 011713 257 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG---SVRTNLD--PL 331 (479)
Q Consensus 257 i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~g---Ti~eNi~--~~ 331 (479)
.++|+++||+|+||||||||+++|.|++.| ++++|+|++++|+. |+++|+. +.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999875 58999999999854 5666653 22
Q ss_pred C--CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCC-------CCH
Q 011713 332 G--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATAS-------IDS 402 (479)
Q Consensus 332 ~--~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSa-------LD~ 402 (479)
. ..+.+++.++++..++.+++.. | .++...|+++. |+||+++||+++.+|+++++||||++ ||+
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~s~g~~~~-----~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~ 133 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM-P-VYDFRAYTRSP-----RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDA 133 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE-C-CEETTTTEECS-----SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEEC
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC-C-cccCcccCCCC-----CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeC
Confidence 1 2455778888777665544433 3 33333333221 46899999999999999999999999 999
Q ss_pred HHHHHHHHHHHHH--CCCcEEEEEccCc
Q 011713 403 ATDAILQRIIREE--FPGSTVITIAHRV 428 (479)
Q Consensus 403 ~te~~i~~~l~~~--~~~~TvI~IaHrl 428 (479)
.++..+.+.+.+. .+++|++.++|+.
T Consensus 134 ~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 134 DADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp CHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999888764 2588999999984
No 97
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.83 E-value=4.7e-22 Score=199.11 Aligned_cols=166 Identities=19% Similarity=0.132 Sum_probs=121.3
Q ss_pred eeeee-eEEeeCCcEEEEEcCCCCcHHHHHHHHhccC--CCCC----ce-EEECCeecCCCCHHHHhccceEEcCCCccc
Q 011713 249 VLKGI-TCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPEN----GR-ILIDGLDICSMGLKDLRTKLSIIPQEPTLF 320 (479)
Q Consensus 249 vL~~i-sl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~--~p~~----G~-I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF 320 (479)
.|+++ ++.|++|+.++|+||+|||||||++.+++.+ +|++ |+ |++|+.+.. .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 56665 6899999999999999999999999999999 6776 67 999997651 256788999999999
Q ss_pred cccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhh-------cCCCEEEE
Q 011713 321 RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL-------KRNRILIL 393 (479)
Q Consensus 321 ~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll-------~~p~iliL 393 (479)
..++.+||.+....+ |++|+|++.++++++ .+|+++|+
T Consensus 193 ~~~v~~ni~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIl 237 (349)
T 1pzn_A 193 PDEVLKHIYVARAFN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIV 237 (349)
T ss_dssp HHHHGGGEEEEECCS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEE
T ss_pred HHHHhhCEEEEecCC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEE
Confidence 889999997532222 345777777777777 68999999
Q ss_pred eCCCCCCCHHH------------HHHHHHHHHHHC--CCcEEEEEccCchhhhc-CCEEEEEeCCEEEEecChhhhh
Q 011713 394 DEATASIDSAT------------DAILQRIIREEF--PGSTVITIAHRVPTITD-SDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 394 DE~TSaLD~~t------------e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-~D~I~vl~~G~Ive~G~~~eLl 455 (479)
||||+.+|++. -..+...|.++. .++|+|+++|....... ++.+.+...|++++++.+..|.
T Consensus 238 Ds~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 238 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp ETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred eCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 99999999863 134444444433 38999999998775542 3456788899999988887775
No 98
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.82 E-value=1.5e-21 Score=206.24 Aligned_cols=153 Identities=14% Similarity=0.085 Sum_probs=113.1
Q ss_pred eEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCCC
Q 011713 254 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM 333 (479)
Q Consensus 254 sl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~ 333 (479)
+..+++|+.++|+|+||||||||++.+++...|. |+ +.+.+++|++. .++++|.... .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~-g 332 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSW-G 332 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTT-S
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHc-C
Confidence 4489999999999999999999999999999885 53 11445566652 2444444211 1
Q ss_pred CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHH-----HHHHH
Q 011713 334 YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSA-----TDAIL 408 (479)
Q Consensus 334 ~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~-----te~~i 408 (479)
.+.++ +.. .|+..........|||||+||+++||++..+|++||+| ||++||.. ..+.+
T Consensus 333 ~~~~~------------~~~---~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i 396 (525)
T 1tf7_A 333 MDFEE------------MER---QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFV 396 (525)
T ss_dssp CCHHH------------HHH---TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHH
T ss_pred CCHHH------------HHh---CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHH
Confidence 12111 111 12222223334579999999999999999999999999 99999998 77777
Q ss_pred HHHHHHHC-CCcEEEEEccCc----------hhhh-cCCEEEEEeCCE
Q 011713 409 QRIIREEF-PGSTVITIAHRV----------PTIT-DSDMVMVLSYGE 444 (479)
Q Consensus 409 ~~~l~~~~-~~~TvI~IaHrl----------~~i~-~~D~I~vl~~G~ 444 (479)
.+.++.+. .++|+|+|+|.. ..+. .||+|++|++|+
T Consensus 397 ~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 397 IGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 77776653 489999999998 5555 489999999987
No 99
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.82 E-value=1.8e-22 Score=192.59 Aligned_cols=166 Identities=13% Similarity=0.154 Sum_probs=106.4
Q ss_pred CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHH
Q 011713 246 TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVR 325 (479)
Q Consensus 246 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~ 325 (479)
..++|+|+||++++|+.+||+||||||||||+++|+|++ |.+.++ ..++.+++++|+++...-|..
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 345999999999999999999999999999999999977 666554 367889999999744445888
Q ss_pred hhcCCC-C--C------CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCC
Q 011713 326 TNLDPL-G--M------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEA 396 (479)
Q Consensus 326 eNi~~~-~--~------~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~ 396 (479)
+|+.+. . . .+.+++.+.++ .+.++.+..+ ..||+||+||+++ ++++.+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~---------~l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLK---------NIVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHH---------HHHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHH---------HHHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 887421 1 1 12222333322 2223444444 4699999999988 688899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhh-hc-CCEEEEEeCCEEEEecChhhhhc
Q 011713 397 TASIDSATDAILQRIIREEFPGSTVITIAHRVPTI-TD-SDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 397 TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i-~~-~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
....|.. +.+. .+.|++++||...-+ +. ++.+ ++|+ +.+++++
T Consensus 143 ~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 143 LVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp TTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred cccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 8877754 2222 378999999974333 33 3333 6665 5666653
No 100
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.82 E-value=1.7e-20 Score=193.46 Aligned_cols=74 Identities=19% Similarity=0.247 Sum_probs=68.4
Q ss_pred CCChhHHHHHHHHHHhh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEEccCchhhhcCCEEEEEeC
Q 011713 369 NWSVGQRQLFCLGRVLL----KRNRILILDEATASIDSATDAILQRIIREEFP-GSTVITIAHRVPTITDSDMVMVLSY 442 (479)
Q Consensus 369 ~LSgGQrQRlaiARAll----~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~IaHrl~~i~~~D~I~vl~~ 442 (479)
.||||||||++|||+|. ++||++|||||||+||+.+...+.+.|++... +.++|+|||+...+..||+++++..
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~~ 411 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVYR 411 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEEE
Confidence 39999999999999999 68999999999999999999999999988754 6899999999998999999999863
No 101
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.81 E-value=1.8e-20 Score=205.27 Aligned_cols=94 Identities=22% Similarity=0.314 Sum_probs=86.0
Q ss_pred cCCCCCCChhHHHHHHHHHHhhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcCCEEEEE
Q 011713 364 SDEGENWSVGQRQLFCLGRVLLKRN--RILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMVL 440 (479)
Q Consensus 364 ge~G~~LSgGQrQRlaiARAll~~p--~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~vl 440 (479)
...-..|||||||||+||++|..+| ++|||||||++||+..-..+.+.|+++. .|.|+|+|+||+..+..||+|++|
T Consensus 499 dR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~L 578 (972)
T 2r6f_A 499 SRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDI 578 (972)
T ss_dssp SSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEe
Confidence 4444689999999999999999985 9999999999999999899999998875 489999999999999999999999
Q ss_pred ------eCCEEEEecChhhhhcc
Q 011713 441 ------SYGELVEYDLPSNLMKT 457 (479)
Q Consensus 441 ------~~G~Ive~G~~~eLl~~ 457 (479)
++|+|+..|+++++++.
T Consensus 579 gpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 579 GPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp CSSSGGGCCSEEEEECTTTTTTC
T ss_pred CCCccCCCCEEEEecCHHHHHhh
Confidence 79999999999999874
No 102
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.81 E-value=1.1e-21 Score=181.81 Aligned_cols=169 Identities=14% Similarity=0.171 Sum_probs=106.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccC-----CCCCceEEE-------CCeecCC
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV-----EPENGRILI-------DGLDICS 300 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~-----~p~~G~I~i-------~g~~i~~ 300 (479)
|+++|++|+|+. ++|++ |++++|++++|+|++|||||||++.|+|.. .|+.|.+.+ ++..+-+
T Consensus 4 l~~~~~~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~D 78 (210)
T 1pui_A 4 LNYQQTHFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 78 (210)
T ss_dssp -------CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEE
T ss_pred hhhhhhhheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEE
Confidence 789999999962 47888 899999999999999999999999999998 888898765 2333322
Q ss_pred CC-----------HHHHhccceEEcCCCccccc-cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCC
Q 011713 301 MG-----------LKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGE 368 (479)
Q Consensus 301 ~~-----------~~~lr~~i~~V~Q~~~lF~g-Ti~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~ 368 (479)
.+ .+.+++.++++.|+...+++ ++..++.......++++.+.++.. .+|. -.++..-.
T Consensus 79 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-------~~~~---~~v~nK~D 148 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS-------NIAV---LVLLTKAD 148 (210)
T ss_dssp CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-------TCCE---EEEEECGG
T ss_pred CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHc-------CCCe---EEEEeccc
Confidence 11 13466666677765544443 444444321111122333333211 2231 12344445
Q ss_pred CCChhHHHH-HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC
Q 011713 369 NWSVGQRQL-FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF 416 (479)
Q Consensus 369 ~LSgGQrQR-laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~ 416 (479)
.+|+||||| +..||+++++|+++++||||||+|...-..+.+.|.+..
T Consensus 149 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 149 KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 789999999 899999999999999999999999999888888887754
No 103
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.81 E-value=7.6e-23 Score=205.90 Aligned_cols=148 Identities=17% Similarity=0.105 Sum_probs=117.8
Q ss_pred EEEeEEEE---eCCCCCcee---------eeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCC
Q 011713 234 ELEDLKVR---YRPNTPLVL---------KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM 301 (479)
Q Consensus 234 ~~~~vsf~---Y~~~~~~vL---------~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~ 301 (479)
+|+||+|+ |++..+++| +++||++++|+.++|+||||||||||+++|+|+++|++|.|+++|. .++
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PEL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--ccc
Confidence 89999999 964333466 9999999999999999999999999999999999999999999985 466
Q ss_pred CHHHHhccceEEc-CCCcc---ccccHHhhcCCC-CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 302 GLKDLRTKLSIIP-QEPTL---FRGSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 302 ~~~~lr~~i~~V~-Q~~~l---F~gTi~eNi~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
....+|+.+++++ |++.+ +..|+++||... ...++..+...++.+.++++++.+|.|++|.+++-+.+-+.+..+
T Consensus 215 ~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~ 294 (361)
T 2gza_A 215 FLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTFE 294 (361)
T ss_dssp CCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHHH
T ss_pred CccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHH
Confidence 6666788999999 99886 888999999642 223344444445567788899999999999999988888889999
Q ss_pred HHHHHHH
Q 011713 377 LFCLGRV 383 (479)
Q Consensus 377 RlaiARA 383 (479)
|+.....
T Consensus 295 Rl~~l~~ 301 (361)
T 2gza_A 295 RLALMVL 301 (361)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9987763
No 104
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.81 E-value=5.5e-22 Score=189.01 Aligned_cols=181 Identities=15% Similarity=0.132 Sum_probs=110.2
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHh--ccCCCCCceEEECCeecCCCCHHHHhccc
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF--RLVEPENGRILIDGLDICSMGLKDLRTKL 310 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~--g~~~p~~G~I~i~g~~i~~~~~~~lr~~i 310 (479)
++++++++.|+.-+. +|.+ .|++|+.++|+||||||||||++.|+ ++.++.+|.+.+++.+..+ .....++.+
T Consensus 7 ~~~~~i~tg~~~lD~-~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 81 (251)
T 2ehv_A 7 QPVRRVKSGIPGFDE-LIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMASF 81 (251)
T ss_dssp -CCCEECCSCTTTGG-GTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHTT
T ss_pred cccceeecCCHhHHH-HhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHHc
Confidence 555666666643211 3333 78999999999999999999999999 7767788888888754221 123345678
Q ss_pred eEEcCCCccccc-cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCC
Q 011713 311 SIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389 (479)
Q Consensus 311 ~~V~Q~~~lF~g-Ti~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~ 389 (479)
++++|++..+.. ++.++..........+...... ..+-++.+....+..-..+|+
T Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~l~~~~p~ 137 (251)
T 2ehv_A 82 GWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLED------------------------RFNVDNFLRYIYRVVKAINAK 137 (251)
T ss_dssp TCCHHHHHHTTSEEEEC-------------------------------------------CCHHHHHHHHHHHHHHTTCS
T ss_pred CCChHHHhhcCCEEEEEccccccccccccceeccC------------------------cccHHHHHHHHHHHHHhhCCC
Confidence 898887654432 3334332110000000000000 112334333334444457999
Q ss_pred EEEEeCCCCCCC-----HHHHHHHHHHHHHHC-CCcEEEEEccCchhh----------hcC-CEEEEEeC
Q 011713 390 ILILDEATASID-----SATDAILQRIIREEF-PGSTVITIAHRVPTI----------TDS-DMVMVLSY 442 (479)
Q Consensus 390 iliLDE~TSaLD-----~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i----------~~~-D~I~vl~~ 442 (479)
+++|||||+.+| +...+.+.+.++.+. .++|+|++||.++.+ ..| |+|++|++
T Consensus 138 ~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 138 RLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp EEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred EEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 999999999997 555555777766553 489999999999876 457 99999953
No 105
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.81 E-value=1e-20 Score=206.09 Aligned_cols=145 Identities=16% Similarity=0.207 Sum_probs=114.4
Q ss_pred ccEEEEeEEEEeCC---CCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC-CCCceEEECCeecCCCCHHHH
Q 011713 231 GRIELEDLKVRYRP---NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-PENGRILIDGLDICSMGLKDL 306 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~---~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~-p~~G~I~i~g~~i~~~~~~~l 306 (479)
+.|++++. ++|- ..+++++|+||+ |+.++|+|||||||||++++++|+.. |+.|.+. + ..
T Consensus 549 ~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a~ 612 (765)
T 1ewq_A 549 DRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------AE 612 (765)
T ss_dssp SSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------SS
T ss_pred CcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------hh
Confidence 46888887 4543 345799999999 99999999999999999999999974 7788752 1 12
Q ss_pred hccceEEcCCCccccc-cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh-
Q 011713 307 RTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL- 384 (479)
Q Consensus 307 r~~i~~V~Q~~~lF~g-Ti~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl- 384 (479)
+..+++++| +|.. ++.||+.. .+|+|++|++.+|+++
T Consensus 613 ~~~i~~v~~---i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il~ 651 (765)
T 1ewq_A 613 EAHLPLFDG---IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALILK 651 (765)
T ss_dssp EEEECCCSE---EEEECCC--------------------------------------------CCSHHHHHHHHHHHHHH
T ss_pred ccceeeHHH---hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHHH
Confidence 457888887 5543 66666531 2588999999999999
Q ss_pred -hcCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHCCCcEEEEEccCchhhhcC
Q 011713 385 -LKRNRILILDEA---TASIDSATD-AILQRIIREEFPGSTVITIAHRVPTITDS 434 (479)
Q Consensus 385 -l~~p~iliLDE~---TSaLD~~te-~~i~~~l~~~~~~~TvI~IaHrl~~i~~~ 434 (479)
+.+|+++||||| ||+||+.+. ..+.+.+.+ .++|+|++||..+....|
T Consensus 652 ~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 652 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred hccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 999999999999 999999875 578888877 589999999998877655
No 106
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.81 E-value=3.3e-22 Score=214.16 Aligned_cols=190 Identities=16% Similarity=0.220 Sum_probs=124.1
Q ss_pred cEEEEeEEEEeCCCCCceeeee----------eEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCceEEECCeecCC
Q 011713 232 RIELEDLKVRYRPNTPLVLKGI----------TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICS 300 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~i----------sl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-~~G~I~i~g~~i~~ 300 (479)
.++++|+++.|++..+++|+.+ ++++|. +|||||||||||||+++|+|++.| ++|.|+++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 4899999999965434455555 366765 999999999999999999999988 79999999998632
Q ss_pred ---CCHHHHhccceEEcCCCccccc-cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHH
Q 011713 301 ---MGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 376 (479)
Q Consensus 301 ---~~~~~lr~~i~~V~Q~~~lF~g-Ti~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQ 376 (479)
-....+|+.++|++|++.+++. |+++||.. +... +... +..+| ++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~-----------~~~~------~~~~-----------~~~~s---~~ 135 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINK-----------AQNA------IAGE-----------GMGIS---HE 135 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHH-----------HHHH------HHCS-----------SSCCC---SC
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHH-----------HHHH------hcCC-----------ccccc---hH
Confidence 1245689999999999988765 89998842 1110 1000 11122 24
Q ss_pred HHHHHHHhhcCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHCC---CcEEEEEccCchhh--------h-----cC
Q 011713 377 LFCLGRVLLKRNRILILDEA------TASIDSATDAILQRIIREEFP---GSTVITIAHRVPTI--------T-----DS 434 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~------TSaLD~~te~~i~~~l~~~~~---~~TvI~IaHrl~~i--------~-----~~ 434 (479)
++.++.+...+|+++++||| |++||+.....+.+.++++.. +.++++++|.+... + ..
T Consensus 136 ~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~ 215 (608)
T 3szr_A 136 LITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGD 215 (608)
T ss_dssp CEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCC
T ss_pred HHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCC
Confidence 44555555668999999999 999999999999999988642 46788889997632 1 23
Q ss_pred CEEEEEeCCEEEEecChhhhh
Q 011713 435 DMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 435 D~I~vl~~G~Ive~G~~~eLl 455 (479)
..|.|+.++.+++.|+.+++.
T Consensus 216 rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 216 RTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp SEEEEEECGGGSSSSSTTCCC
T ss_pred ceEEEecchhhcCcccHHHHH
Confidence 669999999999999876554
No 107
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.81 E-value=8.7e-20 Score=159.60 Aligned_cols=88 Identities=24% Similarity=0.211 Sum_probs=75.7
Q ss_pred cccccc-----cCCCCCCChhHHHHHHHH------HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEc
Q 011713 358 LLDSSV-----SDEGENWSVGQRQLFCLG------RVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVITIA 425 (479)
Q Consensus 358 G~~T~v-----ge~G~~LSgGQrQRlaiA------RAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~Ia 425 (479)
+|++.+ ......||||||||++|| ||++.+|+++||||||++||+.+...+.+.+.++. +++|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 666665 234568999999999876 99999999999999999999999999999998864 478999999
Q ss_pred cCchhhhcCCEEEEE--eCCEE
Q 011713 426 HRVPTITDSDMVMVL--SYGEL 445 (479)
Q Consensus 426 Hrl~~i~~~D~I~vl--~~G~I 445 (479)
|++.....||+|++| ++|..
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTEE
T ss_pred ChHHHHHhCCEEEEEEcCCCeE
Confidence 999777789999999 56643
No 108
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.80 E-value=2.1e-20 Score=175.66 Aligned_cols=148 Identities=20% Similarity=0.201 Sum_probs=102.7
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhccCCC-------CCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhc
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEP-------ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL 328 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-------~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi 328 (479)
-+++|+.++|+||||||||||+++|+|.+.| ..|.|++++.+. +. ++++++++|+..++..|+.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6899999999999999999999999997666 455888888652 11 2357778888888888999998
Q ss_pred CCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhh-------cCCCEEEEeCCCCCCC
Q 011713 329 DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL-------KRNRILILDEATASID 401 (479)
Q Consensus 329 ~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll-------~~p~iliLDE~TSaLD 401 (479)
.+....+..+ |++++..+++++ .+|++++|||||+.+|
T Consensus 95 ~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 95 YVARAFNSNH-----------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp EEEECCSHHH-----------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred EEEecCChHH-----------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 6533222211 222233333333 4899999999999999
Q ss_pred HH-------HH-----HHHHHHHHHHC--CCcEEEEEcc----Cchhhhc-CCEEEEEeCCE
Q 011713 402 SA-------TD-----AILQRIIREEF--PGSTVITIAH----RVPTITD-SDMVMVLSYGE 444 (479)
Q Consensus 402 ~~-------te-----~~i~~~l~~~~--~~~TvI~IaH----rl~~i~~-~D~I~vl~~G~ 444 (479)
++ .+ ..+.+.+.++. .++|+|+++| ....+.. ||++++|++|+
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 140 SEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 84 22 24555555543 3899999999 4444655 89999999863
No 109
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.80 E-value=7.7e-21 Score=190.16 Aligned_cols=147 Identities=20% Similarity=0.169 Sum_probs=111.4
Q ss_pred EeEEEEeCCCCCceeeeeeE-------EeeCCcEEEEEcCCCCcHHHHHHHHhccCCCC-CceEEECCeecCCCCHHHHh
Q 011713 236 EDLKVRYRPNTPLVLKGITC-------TFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGLDICSMGLKDLR 307 (479)
Q Consensus 236 ~~vsf~Y~~~~~~vL~~isl-------~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~-~G~I~i~g~~i~~~~~~~lr 307 (479)
.+++++|.+...+.|+++.+ ...+|+.++|+|||||||||++++|+|+++|+ +|.|...+.++. +. ++
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hh---hh
Confidence 67888886666678888887 78899999999999999999999999999997 577765544432 22 23
Q ss_pred ccceEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcC
Q 011713 308 TKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 387 (479)
Q Consensus 308 ~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~ 387 (479)
...++++|.+.-.. + .+-.+ +|||||..+
T Consensus 168 ~~~~~v~q~~~~~~-----~------~~~~~----------------------------------------~La~aL~~~ 196 (356)
T 3jvv_A 168 SKKCLVNQREVHRD-----T------LGFSE----------------------------------------ALRSALRED 196 (356)
T ss_dssp CSSSEEEEEEBTTT-----B------SCHHH----------------------------------------HHHHHTTSC
T ss_pred ccccceeeeeeccc-----c------CCHHH----------------------------------------HHHHHhhhC
Confidence 44566666543211 0 11111 999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCC
Q 011713 388 NRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYG 443 (479)
Q Consensus 388 p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G 443 (479)
|++++||||| |.++...+.++. ..|+|+++++|..+.+..+||+++|..|
T Consensus 197 PdvillDEp~---d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 197 PDIILVGEMR---DLETIRLALTAA---ETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp CSEEEESCCC---SHHHHHHHHHHH---HTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred cCEEecCCCC---CHHHHHHHHHHH---hcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 9999999999 787766555543 3589999999999999889999988544
No 110
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.79 E-value=8.1e-20 Score=202.34 Aligned_cols=166 Identities=13% Similarity=0.081 Sum_probs=119.2
Q ss_pred ccEEEEeEEEEeCC---CCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHH--------hccCCCCCceEEECCeecC
Q 011713 231 GRIELEDLKVRYRP---NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISAL--------FRLVEPENGRILIDGLDIC 299 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~---~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL--------~g~~~p~~G~I~i~g~~i~ 299 (479)
+.|++++...-+-. +.+.+++|++|++++|+.++|+|||||||||+++++ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 35788776433311 234699999999999999999999999999999999 56555544321
Q ss_pred CCCHHHHhccceEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHH
Q 011713 300 SMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 379 (479)
Q Consensus 300 ~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRla 379 (479)
++ +.+.+. ...++.+.+ ...+|+|++++..
T Consensus 702 ----------~~------------~~d~i~--------------~~ig~~d~l--------------~~~lStf~~e~~~ 731 (934)
T 3thx_A 702 ----------VS------------IVDCIL--------------ARVGAGDSQ--------------LKGVSTFMAEMLE 731 (934)
T ss_dssp ----------EE------------CCSEEE--------------EECC-----------------------CHHHHHHHH
T ss_pred ----------ch------------HHHHHH--------------HhcCchhhH--------------HHhHhhhHHHHHH
Confidence 01 011110 001111111 1357888888888
Q ss_pred HHHHh--hcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHC--CCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhh
Q 011713 380 LGRVL--LKRNRILILDEATASIDSATDAIL-QRIIREEF--PGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNL 454 (479)
Q Consensus 380 iARAl--l~~p~iliLDE~TSaLD~~te~~i-~~~l~~~~--~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eL 454 (479)
+|+++ +.+|+++||||||+++|+.....+ ...++.+. .++|+|++||..+....||++..+++|++...++.+++
T Consensus 732 ~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 732 TASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp HHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred HHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence 88888 899999999999999999887666 44444443 48999999999998899999999999999988877776
No 111
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.78 E-value=1.4e-20 Score=191.68 Aligned_cols=166 Identities=16% Similarity=0.147 Sum_probs=101.9
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccc
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 310 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i 310 (479)
+.|.++||+++|+. .++++|+||+| +|||+||||||||++.|+|...|..| .+|.++... ....++.+
T Consensus 10 ~~l~~~~l~~~y~~--~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~i 77 (418)
T 2qag_C 10 GYVGFANLPNQVYR--KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQS 77 (418)
T ss_dssp -----CCCCCCTTT--TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEE
T ss_pred CcEEEEecceeECC--EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeeeE
Confidence 35899999999964 45999999998 99999999999999999999886666 244433221 11224678
Q ss_pred eEEcCCCccc-cccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCC
Q 011713 311 SIIPQEPTLF-RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 389 (479)
Q Consensus 311 ~~V~Q~~~lF-~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~ 389 (479)
++++|++.++ .-||.||+.++...+.++.++. +.+++.. .++.+.+||++||||++++|+
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d~~ 138 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPDNR 138 (418)
T ss_dssp ECC------CEEEEEEECC-----------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCCC-
T ss_pred EEEEecCCcccceeeeechhhhhhccchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccCCC
Confidence 9999998877 5699999875432222222222 2233332 234466789999999999999
Q ss_pred ---EEEEeCCC-CCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhh
Q 011713 390 ---ILILDEAT-ASIDSATDAILQRIIREEFPGSTVITIAHRVPTI 431 (479)
Q Consensus 390 ---iliLDE~T-SaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i 431 (479)
+|++|||| ++||+... .+++ .+..+.++|+|.|+...+
T Consensus 139 ~~vlL~ldePt~~~L~~~d~-~~lk---~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDI-EFMK---RLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHH-HHHH---HHTTTSEEEEEEESTTSS
T ss_pred eeEEEEEecCcccCCCHHHH-HHHH---HHhccCcEEEEEEcccCc
Confidence 99999999 69998763 3333 344578999999988764
No 112
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.78 E-value=4.9e-19 Score=194.69 Aligned_cols=95 Identities=20% Similarity=0.277 Sum_probs=86.2
Q ss_pred ccCCCCCCChhHHHHHHHHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEEEccCchhhhcCCEEEE
Q 011713 363 VSDEGENWSVGQRQLFCLGRVLLKR--NRILILDEATASIDSATDAILQRIIREEF-PGSTVITIAHRVPTITDSDMVMV 439 (479)
Q Consensus 363 vge~G~~LSgGQrQRlaiARAll~~--p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~IaHrl~~i~~~D~I~v 439 (479)
+...-..|||||||||+||+||..+ |++|||||||++||+..-..+.+.|+++. .|.|+|+|+||+..+..||+|++
T Consensus 515 l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~ 594 (993)
T 2ygr_A 515 LSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVD 594 (993)
T ss_dssp TTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEE
T ss_pred cCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEE
Confidence 3444568999999999999999998 58999999999999999889998888764 48999999999999999999999
Q ss_pred E------eCCEEEEecChhhhhcc
Q 011713 440 L------SYGELVEYDLPSNLMKT 457 (479)
Q Consensus 440 l------~~G~Ive~G~~~eLl~~ 457 (479)
| ++|+++..|+++++++.
T Consensus 595 Lgp~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 595 IGPGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp ECSSSGGGCCSCCEEECHHHHHHC
T ss_pred ecCccccCCCEEEEeeCHHHhhhh
Confidence 9 79999999999999874
No 113
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.77 E-value=1e-19 Score=178.38 Aligned_cols=163 Identities=17% Similarity=0.131 Sum_probs=108.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCC----HHHH--hccceEEcCCCccccc-cHHhhcCCC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKDL--RTKLSIIPQEPTLFRG-SVRTNLDPL 331 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~----~~~l--r~~i~~V~Q~~~lF~g-Ti~eNi~~~ 331 (479)
+|+.++|||||||||||+++.|+|++.|++|+|.++|.|+.... +..| |..+++|+|++.+++. |+++|+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999987654 2233 4679999999987764 777877421
Q ss_pred CCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCC--EEEEeCCCCCCCHHHHHHHH
Q 011713 332 GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR--ILILDEATASIDSATDAILQ 409 (479)
Q Consensus 332 ~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~--iliLDE~TSaLD~~te~~i~ 409 (479)
. ..+.+..+-..+...+. ....++..++||.+||||+..+|+ +|.|| |+++.| +.
T Consensus 181 -----------~-~~~~d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~~ 237 (304)
T 1rj9_A 181 -----------K-ARGYDLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------GL 237 (304)
T ss_dssp -----------H-HHTCSEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------HH
T ss_pred -----------H-hCCCCEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------HH
Confidence 0 00100001011111110 112246677999999999999999 55566 455443 33
Q ss_pred HHHHHHC--CCcEEEEEccCchhhhcC----------CEEEEEeCCE
Q 011713 410 RIIREEF--PGSTVITIAHRVPTITDS----------DMVMVLSYGE 444 (479)
Q Consensus 410 ~~l~~~~--~~~TvI~IaHrl~~i~~~----------D~I~vl~~G~ 444 (479)
+.+++.. .+.|+|++||...+.+.. -.|..+-.|+
T Consensus 238 ~~~~~~~~~~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge 284 (304)
T 1rj9_A 238 EQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE 284 (304)
T ss_dssp HHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred HHHHHHHHHcCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence 3333221 278999999986554322 3566666655
No 114
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.76 E-value=1.8e-18 Score=155.15 Aligned_cols=78 Identities=26% Similarity=0.317 Sum_probs=71.3
Q ss_pred CCCChhHHHHHHHHHHhh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEE--e
Q 011713 368 ENWSVGQRQLFCLGRVLL----KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVL--S 441 (479)
Q Consensus 368 ~~LSgGQrQRlaiARAll----~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl--~ 441 (479)
..||||||||++|||++. ++||++||||||++||+.+...+.+.|++..++.++|+|||+...+..||+++.+ +
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~~ 142 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSMR 142 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEec
Confidence 579999999999999996 5679999999999999999999999999998889999999999999999999865 5
Q ss_pred CCEE
Q 011713 442 YGEL 445 (479)
Q Consensus 442 ~G~I 445 (479)
+|..
T Consensus 143 ~g~s 146 (173)
T 3kta_B 143 DGVS 146 (173)
T ss_dssp TTEE
T ss_pred CCEE
Confidence 6654
No 115
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.76 E-value=2.7e-20 Score=182.70 Aligned_cols=162 Identities=17% Similarity=0.109 Sum_probs=80.4
Q ss_pred EeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhcc-CCCCCceEEECCeecCCCCHHHHhccceEEc
Q 011713 236 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL-VEPENGRILIDGLDICSMGLKDLRTKLSIIP 314 (479)
Q Consensus 236 ~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~-~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~ 314 (479)
+||++.|+. ..+++|++|+| +|+|+||||||||++.|+|. ..|++| |.++|.++.. .. -++.+++++
T Consensus 2 ~~l~~~~~~--~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~--~~~~~~~~~ 69 (301)
T 2qnr_A 2 SNLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV--QIEASTVEI 69 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEE
T ss_pred CCCcceECC--EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc--eEeeEEEEe
Confidence 478888853 35999999998 99999999999999999998 889999 9999987654 11 146789999
Q ss_pred CCCccc-cccHHhhcCCCCCCCH-HHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEE
Q 011713 315 QEPTLF-RGSVRTNLDPLGMYSD-NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILI 392 (479)
Q Consensus 315 Q~~~lF-~gTi~eNi~~~~~~~~-~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~ili 392 (479)
|++.++ .-|+.||..++..... ++.....+. +.+. ++..+ ..+|||||||+++|||+. +++
T Consensus 70 q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~-------~~~~~----~~~sgg~rqrv~~ara~~----ll~ 132 (301)
T 2qnr_A 70 EERGVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQ-------FERYL----HDESGLNRRHIIDNRVHC----CFY 132 (301)
T ss_dssp C---CCEEEEEEEEC-----------CTTHHHH--HHHH-------HHHHH----HHHTSSCCTTCCCCCCCE----EEE
T ss_pred cCCCcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHH-------HHHHH----HHhCHHhhhhhhhhhhhh----eee
Confidence 987654 4589998865322111 111111111 1111 11112 358999999999999985 999
Q ss_pred EeCCCCC-CCHHHHHHHHHHHHHHCC--CcEEEEEccCchh
Q 011713 393 LDEATAS-IDSATDAILQRIIREEFP--GSTVITIAHRVPT 430 (479)
Q Consensus 393 LDE~TSa-LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~ 430 (479)
+||||++ ||+... +.++++.+ +.++|+..|++.+
T Consensus 133 ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 133 FISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp EECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred eecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 9999985 999874 33333332 5678888898753
No 116
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.75 E-value=3.8e-21 Score=187.34 Aligned_cols=128 Identities=10% Similarity=0.019 Sum_probs=94.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCC-C---C
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG-M---Y 334 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~-~---~ 334 (479)
++.+|+|+|+||||||||+++|.+++.+. | . . ++.+.+|+||+++|+.++++|+.+.. + .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 57899999999999999999999999874 2 0 1 45566779999999999999985321 0 0
Q ss_pred CHHHHHHHHHHccHHHHHHhCCcccccc------ccCCCCCCChhHHHHHHHH--HHhhcCCCEEEEeCCCCCCCHHH
Q 011713 335 SDNEIWEAMEKCQLKATISRLPMLLDSS------VSDEGENWSVGQRQLFCLG--RVLLKRNRILILDEATASIDSAT 404 (479)
Q Consensus 335 ~~~~i~~a~~~a~l~~~i~~lp~G~~T~------vge~G~~LSgGQrQRlaiA--RAll~~p~iliLDE~TSaLD~~t 404 (479)
+....-++.....+.+++..++.|++|. +...+.++||||+||+++| |++ +|+|+|+||+|+++|+++
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000011223445778899999998874 4566789999999999998 666 999999999999999864
No 117
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.73 E-value=3.7e-19 Score=166.34 Aligned_cols=141 Identities=16% Similarity=0.135 Sum_probs=105.5
Q ss_pred eEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCceEEECCeecCCCCHHHHhccceEEcCCCccccc-cH----Hh
Q 011713 254 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SV----RT 326 (479)
Q Consensus 254 sl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p--~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~g-Ti----~e 326 (479)
.-+.++|+.++|+||||||||||+++|+|+++| ..|.|.+.+.+.+. ..++.++|++|++.+|.. |+ .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 346789999999999999999999999999986 78999999876543 246789999999998876 44 46
Q ss_pred hcCCCCC---CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHH
Q 011713 327 NLDPLGM---YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSA 403 (479)
Q Consensus 327 Ni~~~~~---~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~ 403 (479)
|+.+... .+.+++ +.++..++++||| ||+.
T Consensus 86 ~~~~~~~~yg~~~~~v------------------------------------------~~~l~~G~illLD-----LD~~ 118 (219)
T 1s96_A 86 HAEVFGNYYGTSREAI------------------------------------------EQVLATGVDVFLD-----IDWQ 118 (219)
T ss_dssp EEEETTEEEEEEHHHH------------------------------------------HHHHTTTCEEEEE-----CCHH
T ss_pred HHHHHhccCCCCHHHH------------------------------------------HHHHhcCCeEEEE-----ECHH
Confidence 6653221 112222 3333446999999 9999
Q ss_pred HHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEeCCEEEEecChhhhhc
Q 011713 404 TDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLSYGELVEYDLPSNLMK 456 (479)
Q Consensus 404 te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~G~~~eLl~ 456 (479)
+...+.+.+. +++|+++++|+++.++. |+ ++.| .++.+++.+
T Consensus 119 ~~~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 119 GAQQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 9999988775 58999999999998876 43 6677 577777754
No 118
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.73 E-value=1.3e-18 Score=163.42 Aligned_cols=165 Identities=10% Similarity=0.028 Sum_probs=114.8
Q ss_pred ceeeeeeE-EeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhc---cceEEcCCCcccccc
Q 011713 248 LVLKGITC-TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT---KLSIIPQEPTLFRGS 323 (479)
Q Consensus 248 ~vL~~isl-~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~---~i~~V~Q~~~lF~gT 323 (479)
+.|+++.. .+++|+.++|+||||||||||++.+++...+.+|.|.+.+.+. +.+.+++ .+++.+|+..
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~----- 81 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYI----- 81 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGB-----
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHh-----
Confidence 47889888 8999999999999999999999999999888889998876543 3444433 3444444321
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCC--EEEEeCCCCCC-
Q 011713 324 VRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR--ILILDEATASI- 400 (479)
Q Consensus 324 i~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~--iliLDE~TSaL- 400 (479)
.+++......... .+ +. + +- ...|.+|.++...+.+...+|+ ++|+||||+.+
T Consensus 82 -~~~~~~~~~~~~~--------~~--------~~-~---~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~ 137 (235)
T 2w0m_A 82 -EKKLIIIDALMKE--------KE--------DQ-W---SL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFL 137 (235)
T ss_dssp -TTTEEEEECCC--------------------CT-T---BC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSS
T ss_pred -hCCEEEEeccccc--------cC--------ce-e---ee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhc
Confidence 1122111111100 00 00 0 11 1238999988888887778999 99999999888
Q ss_pred -CHHHHHHHHHHHHHHC--CCcEEEEEccCc--------hhhh-cCCEEEEEeCCE
Q 011713 401 -DSATDAILQRIIREEF--PGSTVITIAHRV--------PTIT-DSDMVMVLSYGE 444 (479)
Q Consensus 401 -D~~te~~i~~~l~~~~--~~~TvI~IaHrl--------~~i~-~~D~I~vl~~G~ 444 (479)
|+.....+.+.|+++. .++|+|+++|.. ..+. .||+|++|++.+
T Consensus 138 ~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 138 DKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp SCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 9988778888887653 479999999998 3354 499999998653
No 119
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.72 E-value=2.1e-21 Score=180.38 Aligned_cols=119 Identities=16% Similarity=0.162 Sum_probs=92.0
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCCCCCH
Q 011713 257 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSD 336 (479)
Q Consensus 257 i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~ 336 (479)
.++|++++|+||||||||||+++|+|+++|+ | ..+++|+|+.+.++.+.++|+.....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~--- 76 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPR--- 76 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGG---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhccccc---
Confidence 5789999999999999999999999999986 4 25788888888888888887642110
Q ss_pred HHHHHHHHHccHHHHHHhCCcc--ccccccCCCCCCChhHHHHHHHH-HHhhcCCCEEEEeCCC
Q 011713 337 NEIWEAMEKCQLKATISRLPML--LDSSVSDEGENWSVGQRQLFCLG-RVLLKRNRILILDEAT 397 (479)
Q Consensus 337 ~~i~~a~~~a~l~~~i~~lp~G--~~T~vge~G~~LSgGQrQRlaiA-RAll~~p~iliLDE~T 397 (479)
..+..+.+...+.+++..++.| ++++++++|..+|+||+||+++| |+++.+++++++|||.
T Consensus 77 ~~~~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 77 KGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp TTSGGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred CCCCchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 0001111222344455666655 88899999999999999999998 9999999999999985
No 120
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.71 E-value=3.7e-18 Score=188.61 Aligned_cols=158 Identities=11% Similarity=0.081 Sum_probs=104.3
Q ss_pred cEEEEeEEEEe-----CCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHH
Q 011713 232 RIELEDLKVRY-----RPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL 306 (479)
Q Consensus 232 ~I~~~~vsf~Y-----~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~l 306 (479)
.|++++..--. +.+.++|++|+||++++|+.++|+|||||||||+++++.++.- +
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~--------------------~ 699 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI--------------------M 699 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH--------------------H
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH--------------------H
Confidence 57777643211 1124579999999999999999999999999999999875321 1
Q ss_pred hccceEEcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhc
Q 011713 307 RTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 386 (479)
Q Consensus 307 r~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~ 386 (479)
.+.-.+||++..-+ ++.+++. ...++.+.+. .+-..+|+|++|+..|+|+ ..
T Consensus 700 aq~g~~vpa~~~~i--~~~d~i~--------------~~ig~~d~l~-----------~~~stfs~em~~~~~il~~-a~ 751 (918)
T 3thx_B 700 AQIGSYVPAEEATI--GIVDGIF--------------TRMGAADNIY-----------KGRSTFMEELTDTAEIIRK-AT 751 (918)
T ss_dssp HHHTCCBSSSEEEE--ECCSEEE--------------EEC---------------------CCHHHHHHHHHHHHHH-CC
T ss_pred hhcCccccchhhhh--hHHHHHH--------------HhCChHHHHH-----------HhHHHhhHHHHHHHHHHHh-cc
Confidence 11122344432111 1112221 0111111111 1124689999999999999 88
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HHHHHH--CCCcEEEEEccCchhhhcCCEE
Q 011713 387 RNRILILDEATASIDSATDAILQ-RIIREE--FPGSTVITIAHRVPTITDSDMV 437 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~-~~l~~~--~~~~TvI~IaHrl~~i~~~D~I 437 (479)
+|+++||||||+++|+.....+. ..++.+ ..++|+|++||.++....||+.
T Consensus 752 ~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 752 SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 99999999999999998877766 445544 2589999999999887766643
No 121
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.70 E-value=2.8e-18 Score=174.05 Aligned_cols=179 Identities=15% Similarity=0.146 Sum_probs=116.0
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcE--EEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhcc
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTR--VGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 309 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~--vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~ 309 (479)
.+++++ +++|++ .+ |+++||++++|+. +|||||||||||||+++|+|+. ++|.++...++...++.
T Consensus 16 ~l~~~~-~~~y~~--~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~ 83 (427)
T 2qag_B 16 TVPLAG-HVGFDS--LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQS 83 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEE
T ss_pred eEEEee-EEEECC--ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEee
Confidence 356666 778853 34 9999999999999 9999999999999999999994 45666655545556778
Q ss_pred ceEEcCCCcccc-ccHHhhcCCCCCCCHHHHHHH----HHHccHHHHHHhC-------Ccccccc----c---cCCCCCC
Q 011713 310 LSIIPQEPTLFR-GSVRTNLDPLGMYSDNEIWEA----MEKCQLKATISRL-------PMLLDSS----V---SDEGENW 370 (479)
Q Consensus 310 i~~V~Q~~~lF~-gTi~eNi~~~~~~~~~~i~~a----~~~a~l~~~i~~l-------p~G~~T~----v---ge~G~~L 370 (479)
+++++|++.++. -|+.||+.++...+.+.-|+. ++. .+.+++... +..-|+. + -+.+..|
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l 162 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSL 162 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---
T ss_pred EEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCC
Confidence 999999998874 599999987654443322221 111 222333332 2223333 2 3555667
Q ss_pred ChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HC-CCcEEEEEcc
Q 011713 371 SVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIRE-EF-PGSTVITIAH 426 (479)
Q Consensus 371 SgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~-~~-~~~TvI~IaH 426 (479)
+-.+ +.++|+|-.+++|+++|+||..|.+.--..+.+.+++ +. .+..++.|+.
T Consensus 163 ~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 163 KSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred CHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 7666 7999999999999999999999988766677777775 43 4678888874
No 122
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.69 E-value=1.7e-17 Score=154.70 Aligned_cols=151 Identities=18% Similarity=0.089 Sum_probs=98.4
Q ss_pred ceeeeeeE-EeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHh
Q 011713 248 LVLKGITC-TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326 (479)
Q Consensus 248 ~vL~~isl-~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~e 326 (479)
+.|+++.. -+++|+.++|+||+|||||||++.+++ .+..+.++++..+ .++...+++.. +
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~~~---------------~ 67 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQMA---------------E 67 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHHHH---------------H
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHHHH---------------H
Confidence 35667665 699999999999999999999999999 4444555555432 12233332210 0
Q ss_pred hcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChh--HHHHHHHHHHhhcC-CCEEEEeCCCCCCCHH
Q 011713 327 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG--QRQLFCLGRVLLKR-NRILILDEATASIDSA 403 (479)
Q Consensus 327 Ni~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgG--QrQRlaiARAll~~-p~iliLDE~TSaLD~~ 403 (479)
.. ..+.++ +...+. +. .+|++ |+|+++.+|+++++ |+++|+||||+.+|+.
T Consensus 68 ~~----~~~~~~------------~~~~~~------~~----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~ 121 (220)
T 2cvh_A 68 TR----GLNPEE------------ALSRFI------LF----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE 121 (220)
T ss_dssp TT----TCCHHH------------HHHHEE------EE----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred hc----CCChHH------------HhhcEE------EE----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence 00 011111 111110 11 22334 47899999999986 9999999999999985
Q ss_pred HH--------HHHHHHHHHHCC--CcEEEEEccCch-------------hh-hcCCEEEEEeCC
Q 011713 404 TD--------AILQRIIREEFP--GSTVITIAHRVP-------------TI-TDSDMVMVLSYG 443 (479)
Q Consensus 404 te--------~~i~~~l~~~~~--~~TvI~IaHrl~-------------~i-~~~D~I~vl~~G 443 (479)
.+ ..+.+.|+++.+ ++|+|+++|... .+ ..||+|++|++.
T Consensus 122 ~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 122 ENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 42 334444555433 789999999865 23 459999999765
No 123
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.69 E-value=8.4e-19 Score=173.49 Aligned_cols=143 Identities=20% Similarity=0.220 Sum_probs=109.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC--------CCCCceEEECCeecCCCC---------------HHHHhccceEE---c
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLV--------EPENGRILIDGLDICSMG---------------LKDLRTKLSII---P 314 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~--------~p~~G~I~i~g~~i~~~~---------------~~~lr~~i~~V---~ 314 (479)
+.++|+|+||||||||++.|+|++ .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999998 889999999999998763 45778889988 7
Q ss_pred CCCcc-ccccHHhhcCCCCCCCHHHHHHHH----------------HHccHHHHHHhCCccccccccCCCCCCChhHHHH
Q 011713 315 QEPTL-FRGSVRTNLDPLGMYSDNEIWEAM----------------EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 377 (479)
Q Consensus 315 Q~~~l-F~gTi~eNi~~~~~~~~~~i~~a~----------------~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQR 377 (479)
|++.+ |+.++.||..++. .+.+.+.+ ..+++.++...+ .++|+||+||
T Consensus 85 q~~~~~~~~~v~E~~~l~~---p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------------~~ls~g~~Q~ 149 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMAD---PGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------------NQFTIAQSQV 149 (318)
T ss_dssp HHTSCCCSEEEEEEETTCC---HHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------------HHCHHHHHHH
T ss_pred hcCCCCCCEEEEeCCCCCC---HHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------------hhchHHHHHH
Confidence 88764 6889999997532 22232222 111222222221 1589999999
Q ss_pred HHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCch
Q 011713 378 FCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVP 429 (479)
Q Consensus 378 laiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~ 429 (479)
...+|+++.+|+++ ||| ..+.+.+++..++.|+++++|...
T Consensus 150 ~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 150 GYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp HTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred HhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 99999999999987 888 677777877778899999999743
No 124
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.67 E-value=8.3e-17 Score=156.22 Aligned_cols=151 Identities=14% Similarity=0.128 Sum_probs=99.6
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcC-CCCCC
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD-PLGMY 334 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~-~~~~~ 334 (479)
.+++|+.++|+||+|||||||++.+++... .|.+. .|.+..+ +..+.|++.+... ..+..++. .+.+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~~~ 94 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGAHL 94 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHTTS
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHhhc
Confidence 478999999999999999999999998764 56663 3543321 2356777665432 22323321 11223
Q ss_pred CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC--CCCHHHH---HHHH
Q 011713 335 SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA--SIDSATD---AILQ 409 (479)
Q Consensus 335 ~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TS--aLD~~te---~~i~ 409 (479)
+.++..++++... +....+.....||+||+|++ |+++++|+++||||||+ ++|.... ..+.
T Consensus 95 ~~~~~~~~~~~l~-----------l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~ 160 (279)
T 1nlf_A 95 SAEERQAVADGLL-----------IQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVI 160 (279)
T ss_dssp CHHHHHHHHHHEE-----------ECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHH
T ss_pred ChhhhhhccCceE-----------EeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHH
Confidence 3343333333332 22233445677999998865 78899999999999999 9998544 6777
Q ss_pred HHHHHHC--CCcEEEEEccCchhh
Q 011713 410 RIIREEF--PGSTVITIAHRVPTI 431 (479)
Q Consensus 410 ~~l~~~~--~~~TvI~IaHrl~~i 431 (479)
+.|.++. .++|+|+|+|.....
T Consensus 161 ~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 161 GRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHcCCEEEEEecCCCcc
Confidence 7777653 389999999987654
No 125
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.67 E-value=1.3e-17 Score=182.57 Aligned_cols=164 Identities=11% Similarity=0.067 Sum_probs=107.0
Q ss_pred cEEEEeEEEEeCC-----CCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCceEEECCeecCCCCHHH
Q 011713 232 RIELEDLKVRYRP-----NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICSMGLKD 305 (479)
Q Consensus 232 ~I~~~~vsf~Y~~-----~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-~~G~I~i~g~~i~~~~~~~ 305 (479)
.|++++. ++|- ..+.+++|+||+ ++|+.++|+|||||||||++++++|+..+ ..| ..+..
T Consensus 577 ~i~i~~~--rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa----- 642 (800)
T 1wb9_A 577 GIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA----- 642 (800)
T ss_dssp CEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS-----
T ss_pred CEEEEec--cccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch-----
Confidence 4777664 2321 234699999999 99999999999999999999999997532 222 11110
Q ss_pred HhccceEEcCCCccccc-cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 306 LRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 306 lr~~i~~V~Q~~~lF~g-Ti~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
-+..+++++| +|.. ++.||+.. |. ..+|+++++ ++.+...
T Consensus 643 ~~~~i~~~~~---i~~~~~~~d~l~~---------------------------~~--------stf~~e~~~-~~~il~~ 683 (800)
T 1wb9_A 643 QKVEIGPIDR---IFTRVGAADDLAS---------------------------GR--------STFMVEMTE-TANILHN 683 (800)
T ss_dssp SEEEECCCCE---EEEEEC----------------------------------------------CHHHHHH-HHHHHHH
T ss_pred hcccceeHHH---HHhhCCHHHHHHh---------------------------hh--------hhhhHHHHH-HHHHHHh
Confidence 1234555554 3322 33343321 11 235666654 4544556
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHC--CCcEEEEEccCchhhhcCCEEEEEeCCEEEEe
Q 011713 385 LKRNRILILDEATASIDSATDAIL-QRIIREEF--PGSTVITIAHRVPTITDSDMVMVLSYGELVEY 448 (479)
Q Consensus 385 l~~p~iliLDE~TSaLD~~te~~i-~~~l~~~~--~~~TvI~IaHrl~~i~~~D~I~vl~~G~Ive~ 448 (479)
+.+|+++||||||+++|+.....+ .+.++.+. .++|+|++||..+....||++..+++|++...
T Consensus 684 a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 684 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred ccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 889999999999999988654433 44555443 38999999999998888998877888877643
No 126
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.67 E-value=1.1e-18 Score=159.29 Aligned_cols=161 Identities=14% Similarity=0.014 Sum_probs=98.2
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCCCCC
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYS 335 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~~~ 335 (479)
.+++|+.++|+|+||||||||+++|++. |..|.|.++|.++..... -++.++|++|++. .+.|+.+|+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~---- 75 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADV---- 75 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHH----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHH----
Confidence 4789999999999999999999999998 789999999977643221 1345788888765 456788887421
Q ss_pred HHHHHHHHHHccHHHHHHhCCc--ccccc--ccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 011713 336 DNEIWEAMEKCQLKATISRLPM--LLDSS--VSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRI 411 (479)
Q Consensus 336 ~~~i~~a~~~a~l~~~i~~lp~--G~~T~--vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~ 411 (479)
... ..+ .+-...++.+.. +++.. .+.....+|+|++||+++||++.++|+++ +|++..+.+.+.
T Consensus 76 -~~~--~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 76 -AGR--YAK-EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp -HHH--HHH-TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred -HHH--Hhc-cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 000 000 000000000000 11000 02233579999999999999999999876 588766666665
Q ss_pred HHHHCCCcEEEEEccCchhhhcCCEE
Q 011713 412 IREEFPGSTVITIAHRVPTITDSDMV 437 (479)
Q Consensus 412 l~~~~~~~TvI~IaHrl~~i~~~D~I 437 (479)
+..+.....+++.|+..+.-+.+++|
T Consensus 144 ~~~l~~~~~~~i~t~~~~~~~~~~~i 169 (191)
T 1zp6_A 144 FADLGAFEHHVLPVSGKDTDQALQSA 169 (191)
T ss_dssp TTCCGGGGGGEEECTTCCTTTTTTTT
T ss_pred HhccCcccccEEECCCCCHHHHHHHH
Confidence 54432212334445443333334443
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.65 E-value=2e-16 Score=149.72 Aligned_cols=148 Identities=18% Similarity=0.210 Sum_probs=93.7
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhc--cCCC-----CCceEEECCeecCC-CCHHHHhccceEEcCCCccccccHHhh
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFR--LVEP-----ENGRILIDGLDICS-MGLKDLRTKLSIIPQEPTLFRGSVRTN 327 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g--~~~p-----~~G~I~i~g~~i~~-~~~~~lr~~i~~V~Q~~~lF~gTi~eN 327 (479)
-+++|+.++|+||||||||||++.+++ ..+| ..|.+++++.+... -....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 5655 67899999865311 1133455667777664 5677
Q ss_pred cCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHH----
Q 011713 328 LDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSA---- 403 (479)
Q Consensus 328 i~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~---- 403 (479)
+.+....+.++..+.++. +.+.+. -.+|+++++||||+.+|+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~--~~~~~~-------------------------------~~~~~lliiD~~~~~~~~~~~~~ 139 (243)
T 1n0w_A 93 VAYARAFNTDHQTQLLYQ--ASAMMV-------------------------------ESRYALLIVDSATALYRTDYSGR 139 (243)
T ss_dssp EEEEECCSHHHHHHHHHH--HHHHHH-------------------------------HSCEEEEEEETSSGGGC------
T ss_pred eEEEecCCHHHHHHHHHH--HHHHHh-------------------------------cCCceEEEEeCchHHHHHHhcCC
Confidence 654333333333332211 111111 1589999999999999986
Q ss_pred ---HHH-----HHHHHHHHHC--CCcEEEEEccCchhhh--------------------cCCEEEEEeCC
Q 011713 404 ---TDA-----ILQRIIREEF--PGSTVITIAHRVPTIT--------------------DSDMVMVLSYG 443 (479)
Q Consensus 404 ---te~-----~i~~~l~~~~--~~~TvI~IaHrl~~i~--------------------~~D~I~vl~~G 443 (479)
+++ .+...+.+.. .++|+|+++|-..... .||.+++|+.|
T Consensus 140 ~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 140 GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 432 3333444332 3899999999654322 58999999876
No 128
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.61 E-value=1.4e-18 Score=173.06 Aligned_cols=177 Identities=16% Similarity=0.179 Sum_probs=116.0
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCC----HHHHhc
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKDLRT 308 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~----~~~lr~ 308 (479)
|+++|+++.|.. ..+|+++|+++++|+.++|+|++|||||||++.|+|++.|++|+|.+.|.|..... ....|.
T Consensus 30 ie~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 30 AESRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp HTCSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred HeeCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 344455556632 34899999999999999999999999999999999999999999999999885432 134578
Q ss_pred cceEEcCCCccccc----------c---HHhhc--------------CCCCCCCHHHHHHHHHH-------------ccH
Q 011713 309 KLSIIPQEPTLFRG----------S---VRTNL--------------DPLGMYSDNEIWEAMEK-------------CQL 348 (479)
Q Consensus 309 ~i~~V~Q~~~lF~g----------T---i~eNi--------------~~~~~~~~~~i~~a~~~-------------a~l 348 (479)
++++++|++.+|.. | ++|.+ +.+-..++..+.+.+.. ..+
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 89999999998852 1 11111 00000011111100000 000
Q ss_pred HHHHHhCCcccc-cccc-CCCCCCChhHHHHHHHHHHhhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 011713 349 KATISRLPMLLD-SSVS-DEGENWSVGQRQLFCLGRVLLK------RNRILILDEATASIDSATDAILQRIIREE 415 (479)
Q Consensus 349 ~~~i~~lp~G~~-T~vg-e~G~~LSgGQrQRlaiARAll~------~p~iliLDE~TSaLD~~te~~i~~~l~~~ 415 (479)
...+...|+-+- +.+. -....+|+|++|+++.|++++. +|+++. |||+|.+.-..+.+.|.+.
T Consensus 188 ~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 188 KKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 001112221110 1111 0113478999999999999997 688877 9999999988888888764
No 129
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=2.6e-15 Score=150.41 Aligned_cols=140 Identities=20% Similarity=0.231 Sum_probs=81.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc-cCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCCCCCHHHH
Q 011713 261 TRVGVVGRTGSGKTTLISALFR-LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEI 339 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g-~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i 339 (479)
..+.|+||+|+||||+++.+++ ++.|+.|.|.++|.+...... -+..+++++|++++.-.. -.. ...+.+.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~ 109 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITP----SDM-GNNDRIVI 109 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECC----C-----CCHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecH----hhc-CCcchHHH
Confidence 3499999999999999999999 899999999999988764332 367899999988753110 000 11122233
Q ss_pred HHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCc
Q 011713 340 WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGS 419 (479)
Q Consensus 340 ~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~ 419 (479)
.+.++.+ .... +++..+ .||| +..+|+++|||||++ ||+.+...+.+.+++..+++
T Consensus 110 ~~~i~~~-----~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~ 165 (354)
T 1sxj_E 110 QELLKEV-----AQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNI 165 (354)
T ss_dssp HHHHHHH-----TTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTE
T ss_pred HHHHHHH-----HHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCC
Confidence 3333221 1111 121111 4666 778999999999999 99999999999999877789
Q ss_pred EEEEEccCchhh
Q 011713 420 TVITIAHRVPTI 431 (479)
Q Consensus 420 TvI~IaHrl~~i 431 (479)
++|++||+++.+
T Consensus 166 ~~Il~t~~~~~l 177 (354)
T 1sxj_E 166 RLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEESCSCSS
T ss_pred EEEEEeCCHHHH
Confidence 999999997643
No 130
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.55 E-value=4e-15 Score=152.82 Aligned_cols=150 Identities=17% Similarity=0.219 Sum_probs=102.8
Q ss_pred eeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCC----HHH--HhccceEEcCCCccc-cc
Q 011713 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKD--LRTKLSIIPQEPTLF-RG 322 (479)
Q Consensus 250 L~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~----~~~--lr~~i~~V~Q~~~lF-~g 322 (479)
-+++||++++|+.++|||+||||||||++.|+|++.|++|+|.++|.|..... +.. .|+.|+||+|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 36899999999999999999999999999999999999999999988775431 122 377899999998765 45
Q ss_pred cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCC------CCCChhHHHHHHHHHHhhcC-C-CEEEEe
Q 011713 323 SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEG------ENWSVGQRQLFCLGRVLLKR-N-RILILD 394 (479)
Q Consensus 323 Ti~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G------~~LSgGQrQRlaiARAll~~-p-~iliLD 394 (479)
|+++|+.+.. . .|+|..+=+.. .++-.--+|++.++|++..+ | .+|+..
T Consensus 363 tV~e~l~~a~------------~-----------~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 363 VIFDAIQAAK------------A-----------RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHH------------H-----------TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHH------------h-----------cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 8888885310 0 12222221111 11112235788999987644 5 355555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCcEEEEEcc
Q 011713 395 EATASIDSATDAILQRIIREEFPGSTVITIAH 426 (479)
Q Consensus 395 E~TSaLD~~te~~i~~~l~~~~~~~TvI~IaH 426 (479)
+||++.|.... .+.+.+. -+.|.+++||
T Consensus 420 DattGq~al~~---ak~f~~~-~~itgvIlTK 447 (503)
T 2yhs_A 420 DASTGQNAVSQ---AKLFHEA-VGLTGITLTK 447 (503)
T ss_dssp EGGGTHHHHHH---HHHHHHH-TCCSEEEEEC
T ss_pred cCcccHHHHHH---HHHHHhh-cCCCEEEEEc
Confidence 58887655422 2223332 3689999999
No 131
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.54 E-value=1.1e-17 Score=152.53 Aligned_cols=165 Identities=13% Similarity=0.019 Sum_probs=105.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccc-cccHHhhcCCCCCCCHHH
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLDPLGMYSDNE 338 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF-~gTi~eNi~~~~~~~~~~ 338 (479)
|+.++|+|||||||||+++.|++ |.+|.+.++|.++.+. ..+++++|....+ ..|+++|+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~-------- 64 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITD-------- 64 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHH--------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHH--------
Confidence 68999999999999999999997 6789999998665332 2467777765433 3366666531
Q ss_pred HHHHHHHccHHHHHHh-CCccccccccCC----CCCC--ChhHHHHHHHHH------HhhcCCCEEEEeCCCCCCCHHHH
Q 011713 339 IWEAMEKCQLKATISR-LPMLLDSSVSDE----GENW--SVGQRQLFCLGR------VLLKRNRILILDEATASIDSATD 405 (479)
Q Consensus 339 i~~a~~~a~l~~~i~~-lp~G~~T~vge~----G~~L--SgGQrQRlaiAR------All~~p~iliLDE~TSaLD~~te 405 (479)
.++ .+... .+.=++...+.. -..+ |+|++|++.++. +++++|+...+|+ ++|+...
T Consensus 65 ---~~~-----~~~~~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 65 ---LTV-----NFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp ---HHH-----HHHHTTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred ---HHH-----HHHhcCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 000 01100 000011111100 0123 788888888888 8888888888884 7999876
Q ss_pred HHHHHHHHHHC-CCcEEEEEccC-chhhhc-CCEEEEEeCCEEEEecChhhhh
Q 011713 406 AILQRIIREEF-PGSTVITIAHR-VPTITD-SDMVMVLSYGELVEYDLPSNLM 455 (479)
Q Consensus 406 ~~i~~~l~~~~-~~~TvI~IaHr-l~~i~~-~D~I~vl~~G~Ive~G~~~eLl 455 (479)
.. .+.+.... .+.|+|..+|. ++.++. ||+|+ ++|+++..|+.+-|-
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 66 67776654 35799999999 888866 99998 999999999987664
No 132
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.54 E-value=8.6e-15 Score=147.80 Aligned_cols=74 Identities=24% Similarity=0.325 Sum_probs=68.0
Q ss_pred CCCChhHHHHH------HHHHHhhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEE
Q 011713 368 ENWSVGQRQLF------CLGRVLLKR-NRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVL 440 (479)
Q Consensus 368 ~~LSgGQrQRl------aiARAll~~-p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl 440 (479)
..|||||+||+ ++|||+..+ |++|||||||++||+.+...+.+.|.+..+++|+|+|||++.....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 47999999987 678999999 99999999999999999999999998876667999999999877789999999
Q ss_pred e
Q 011713 441 S 441 (479)
Q Consensus 441 ~ 441 (479)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 133
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.53 E-value=2.1e-16 Score=150.43 Aligned_cols=146 Identities=14% Similarity=0.110 Sum_probs=95.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHh---ccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccc-cHHhhcCC----
Q 011713 259 EGTRVGVVGRTGSGKTTLISALF---RLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDP---- 330 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~---g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~g-Ti~eNi~~---- 330 (479)
+++.++|+|+|||||||++++|+ |+..|+.|+|.++|.+.. ..+...+..++|++.++.. |+.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999999886532 2345567777887776654 78887732
Q ss_pred ---------CCCCCHHHHHHHHHHccHH--HHHHhCCc--cccccccCCCCCCChhHHHHHHHHHHh-hcCCCEEEEe--
Q 011713 331 ---------LGMYSDNEIWEAMEKCQLK--ATISRLPM--LLDSSVSDEGENWSVGQRQLFCLGRVL-LKRNRILILD-- 394 (479)
Q Consensus 331 ---------~~~~~~~~i~~a~~~a~l~--~~i~~lp~--G~~T~vge~G~~LSgGQrQRlaiARAl-l~~p~iliLD-- 394 (479)
+...+.++.....+..... -++ ..|. .++-........||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L-~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEVDLVISL-NIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEE-ECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEE-ECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 0011222222111101100 000 0000 000011122346888 55 888 9999999999
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHC
Q 011713 395 --EATASIDSATDAILQRIIREEF 416 (479)
Q Consensus 395 --E~TSaLD~~te~~i~~~l~~~~ 416 (479)
|||+++|+.++..+.+.++++.
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred cccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999989988887753
No 134
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.52 E-value=2.3e-17 Score=172.56 Aligned_cols=172 Identities=17% Similarity=0.139 Sum_probs=118.2
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccc--cHH
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG--SVR 325 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~g--Ti~ 325 (479)
.+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--.++. ++.++++.|... ..+ |.+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCHH
Confidence 47889999999999999999999999999999999999999999999865222221 356777887765 332 555
Q ss_pred hhcC----CC------CCCCHHHHHHHHHHcc-------------HHHHHHhC---Ccccccccc-------CCCCCCCh
Q 011713 326 TNLD----PL------GMYSDNEIWEAMEKCQ-------------LKATISRL---PMLLDSSVS-------DEGENWSV 372 (479)
Q Consensus 326 eNi~----~~------~~~~~~~i~~a~~~a~-------------l~~~i~~l---p~G~~T~vg-------e~G~~LSg 372 (479)
+++. .. ++..+.|...+++.+. +.+.+.++ |.|....+. .....+||
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 5542 11 2455555666655542 23333333 333332222 12345799
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-CCcEEEE--EccCchhhhc-CC
Q 011713 373 GQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF-PGSTVIT--IAHRVPTITD-SD 435 (479)
Q Consensus 373 GQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~--IaHrl~~i~~-~D 435 (479)
||+||.++|. + | |++||+++...+.+.+.++. .++|+++ +||.++.+.. |+
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 9999987751 1 6 99999988776666666554 3688875 8999998754 54
No 135
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.52 E-value=1.1e-14 Score=144.01 Aligned_cols=163 Identities=15% Similarity=0.105 Sum_probs=108.3
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHH----HHhccce--EEcCCCccccc-cHHhhc
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK----DLRTKLS--IIPQEPTLFRG-SVRTNL 328 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~----~lr~~i~--~V~Q~~~lF~g-Ti~eNi 328 (479)
..++|+.++|||||||||||+++.|+|++.|++|+|.++|.|+...... .++++++ +++|++.+++. |+++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999876643 3455544 99999888754 888888
Q ss_pred CCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccC-CCC-C-CChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHH
Q 011713 329 DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSD-EGE-N-WSVGQRQLFCLGRVLLKRNRILILDEATASIDSATD 405 (479)
Q Consensus 329 ~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge-~G~-~-LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te 405 (479)
... .. .++|..+-+ -|. . -..=-++.-.++|++..++++++||.+|. .|...
T Consensus 205 ~~~-----------~~------------~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~- 259 (328)
T 3e70_C 205 QHA-----------KA------------RGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVE- 259 (328)
T ss_dssp HHH-----------HH------------HTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHH-
T ss_pred HHH-----------Hh------------ccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHH-
Confidence 421 00 012211100 010 0 01112344459999999999999996665 33222
Q ss_pred HHHHHHHHHHCCCcEEEEEccCchhh----------hcCCEEEEEeCCEEE
Q 011713 406 AILQRIIREEFPGSTVITIAHRVPTI----------TDSDMVMVLSYGELV 446 (479)
Q Consensus 406 ~~i~~~l~~~~~~~TvI~IaHrl~~i----------~~~D~I~vl~~G~Iv 446 (479)
..+.+.+. .+.|.|++||--.+. ...-.|..+..|+-+
T Consensus 260 --~~~~~~~~-~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 260 --QARQFNEA-VKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp --HHHHHHHH-SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred --HHHHHHHh-cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 12223322 378999999954322 123568888888765
No 136
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.51 E-value=1.2e-17 Score=170.31 Aligned_cols=127 Identities=16% Similarity=0.129 Sum_probs=89.0
Q ss_pred eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCC----CHHHHhccceEEc---------C
Q 011713 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLKDLRTKLSIIP---------Q 315 (479)
Q Consensus 249 vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~----~~~~lr~~i~~V~---------Q 315 (479)
+|+++ + .++|+.++|+|||||||||++++|+|+++|++|+|.++|.++... +...+++.+++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56666 4 379999999999999999999999999999999999999887421 1223455666644 8
Q ss_pred CCccc--c-----ccHHhhcCCC--C-------C-CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHH
Q 011713 316 EPTLF--R-----GSVRTNLDPL--G-------M-YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 378 (479)
Q Consensus 316 ~~~lF--~-----gTi~eNi~~~--~-------~-~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRl 378 (479)
+|.++ . .|+++|+... + . .+..+..+.+...++.++. ....|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 88753 2 3777877421 0 1 1122333344444443321 225799999999
Q ss_pred HHHHHhhcCCCEEE
Q 011713 379 CLGRVLLKRNRILI 392 (479)
Q Consensus 379 aiARAll~~p~ili 392 (479)
|||+++.+|++..
T Consensus 302 -LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 -LVRTLCPDCKEPY 314 (418)
T ss_dssp -EEEEECTTTCEEE
T ss_pred -hhhhhcCCCCccC
Confidence 9999999999875
No 137
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.51 E-value=5.1e-16 Score=137.34 Aligned_cols=86 Identities=16% Similarity=0.184 Sum_probs=70.8
Q ss_pred EeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcC
Q 011713 236 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ 315 (479)
Q Consensus 236 ~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q 315 (479)
+|++++|+. ..+++++||++++|+.++|+||||||||||+++|+|++ |++|+|.++|.++.+. ...+ .+++|
T Consensus 11 ~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q 82 (158)
T 1htw_A 11 EFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIY 82 (158)
T ss_dssp HHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEE
T ss_pred HHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cccee
Confidence 445566642 35899999999999999999999999999999999999 9999999999887521 1112 27999
Q ss_pred CCccccccHHhhcC
Q 011713 316 EPTLFRGSVRTNLD 329 (479)
Q Consensus 316 ~~~lF~gTi~eNi~ 329 (479)
++.+|.-|+.||+.
T Consensus 83 ~~~l~~ltv~e~l~ 96 (158)
T 1htw_A 83 HFDLYRLADPEELE 96 (158)
T ss_dssp EEECTTCSCTTHHH
T ss_pred ccccccCCcHHHHH
Confidence 99988778888884
No 138
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.51 E-value=1.7e-14 Score=146.27 Aligned_cols=147 Identities=16% Similarity=0.224 Sum_probs=96.5
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHH--hccCCCCCc-----eEEECCeec-CCCCHHHHhccceEEcCCCccccccHHhh
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISAL--FRLVEPENG-----RILIDGLDI-CSMGLKDLRTKLSIIPQEPTLFRGSVRTN 327 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL--~g~~~p~~G-----~I~i~g~~i-~~~~~~~lr~~i~~V~Q~~~lF~gTi~eN 327 (479)
-|++|+.++|+||||||||||++.+ .+..+|+.| .+++++.+. .......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 5899999999999999999999944 567766444 899998763 22223344566777665 67788
Q ss_pred cCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhh--cCCCEEEEeCCCCCCCHHHH
Q 011713 328 LDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL--KRNRILILDEATASIDSATD 405 (479)
Q Consensus 328 i~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll--~~p~iliLDE~TSaLD~~te 405 (479)
+.+....+.++..+. +.-+++++ .+|+++++||||+.+|++..
T Consensus 247 i~~~~~~~~~~~~~~-----------------------------------l~~~~~~l~~~~~~llVIDs~t~~~~~~~s 291 (400)
T 3lda_A 247 VAYARAYNADHQLRL-----------------------------------LDAAAQMMSESRFSLIVVDSVMALYRTDFS 291 (400)
T ss_dssp EEEEECCSHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETGGGGCC----
T ss_pred EEEeccCChHHHHHH-----------------------------------HHHHHHHHHhcCCceEEecchhhhCchhhc
Confidence 765333333322222 22222222 46999999999999997543
Q ss_pred ------------HHHHHHHHHHC--CCcEEEEEccCch-------------------hhhc-CCEEEEEeCCE
Q 011713 406 ------------AILQRIIREEF--PGSTVITIAHRVP-------------------TITD-SDMVMVLSYGE 444 (479)
Q Consensus 406 ------------~~i~~~l~~~~--~~~TvI~IaHrl~-------------------~i~~-~D~I~vl~~G~ 444 (479)
..+.+.|.++. .++|+|+|+|-.+ .+.+ +|.+++|++|+
T Consensus 292 g~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 292 GRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 45566666553 3799999999832 1233 89999998874
No 139
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.50 E-value=2.1e-15 Score=149.97 Aligned_cols=122 Identities=16% Similarity=0.074 Sum_probs=80.9
Q ss_pred eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCC-CCCceEEEC-CeecCCCCHHHHhccceEEcCCCccccc-cHH
Q 011713 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-PENGRILID-GLDICSMGLKDLRTKLSIIPQEPTLFRG-SVR 325 (479)
Q Consensus 249 vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~-p~~G~I~i~-g~~i~~~~~~~lr~~i~~V~Q~~~lF~g-Ti~ 325 (479)
-++++++. .+|++++|+|+||||||||+|+|+|+.. |.+|+|.++ |.+.. ...+..+++++|++.+++. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 46777774 4799999999999999999999999999 999999997 76542 2346689999999998876 899
Q ss_pred hhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhh
Q 011713 326 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 385 (479)
Q Consensus 326 eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll 385 (479)
++-.. ..+.+++.+. ..++.+.+ |+.....-.-.+|| ||+||++||++++
T Consensus 280 e~~l~--~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 280 EFGLW--HLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp TCCCC--CCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred Hhhhc--CCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 97432 3455554322 11222222 33333333446799 9999999999864
No 140
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.46 E-value=3.5e-14 Score=124.38 Aligned_cols=91 Identities=21% Similarity=0.238 Sum_probs=70.1
Q ss_pred eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCc--eEEECCeecCCCCHHHHhccceEEcCCCccccccHHh
Q 011713 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG--RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326 (479)
Q Consensus 249 vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G--~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~e 326 (479)
+|+++ +|+.++|+||+|||||||++++++.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 46666 8999999999999999999999999987 57 666665432211
Q ss_pred hcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHH
Q 011713 327 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDA 406 (479)
Q Consensus 327 Ni~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~ 406 (479)
+++.+|++|+||||++ +|...+.
T Consensus 79 --------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~ 101 (149)
T 2kjq_A 79 --------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQA 101 (149)
T ss_dssp --------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHH
T ss_pred --------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHH
Confidence 2467899999999998 6655577
Q ss_pred HHHHHHHHHCC-CcE-EEEEccC
Q 011713 407 ILQRIIREEFP-GST-VITIAHR 427 (479)
Q Consensus 407 ~i~~~l~~~~~-~~T-vI~IaHr 427 (479)
.+.+.++.... ++| +|++||+
T Consensus 102 ~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 102 LLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHcCCcEEEEECCC
Confidence 88888876543 577 7777775
No 141
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.43 E-value=6.8e-14 Score=126.33 Aligned_cols=110 Identities=15% Similarity=0.200 Sum_probs=75.5
Q ss_pred eEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCce-EEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCC
Q 011713 254 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR-ILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG 332 (479)
Q Consensus 254 sl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~-I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~ 332 (479)
++++++|+.++|+||+|||||||++.+++.+.|.+|. +.+ + +.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~-------------------~---------~~-------- 75 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF-------------------F---------DT-------- 75 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE-------------------E---------EH--------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE-------------------E---------EH--------
Confidence 4677899999999999999999999999999876663 211 0 11
Q ss_pred CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC-CCCHHHHHHHHHH
Q 011713 333 MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA-SIDSATDAILQRI 411 (479)
Q Consensus 333 ~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TS-aLD~~te~~i~~~ 411 (479)
.++.+-+... .. .+ .. + -+...+.+|++||||||++ ++|+.....+.+.
T Consensus 76 ----~~~~~~~~~~-----~~---~~--------~~-------~---~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 76 ----KDLIFRLKHL-----MD---EG--------KD-------T---KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp ----HHHHHHHHHH-----HH---HT--------CC-------S---HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred ----HHHHHHHHHH-----hc---Cc--------hH-------H---HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 1111111100 00 00 00 0 1122345999999999996 8999998888888
Q ss_pred HHHHC-CCcEEEEEccCch
Q 011713 412 IREEF-PGSTVITIAHRVP 429 (479)
Q Consensus 412 l~~~~-~~~TvI~IaHrl~ 429 (479)
+.... +++++|++||...
T Consensus 126 l~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 126 ITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHcCCCEEEEcCCCh
Confidence 87764 6899999999874
No 142
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.41 E-value=2.3e-14 Score=140.52 Aligned_cols=113 Identities=16% Similarity=0.071 Sum_probs=81.0
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEE---CCeecCCCCHHHHh-ccceEEcCCCccc------cccHH
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI---DGLDICSMGLKDLR-TKLSIIPQEPTLF------RGSVR 325 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i---~g~~i~~~~~~~lr-~~i~~V~Q~~~lF------~gTi~ 325 (479)
++.+|++++++||||||||||+|+|+ +.+|++|+|.+ +|.++..... ..+ +.+++|+|+|-+. .-|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 45679999999999999999999999 99999999999 9988876432 223 3699999999552 3477
Q ss_pred hhc--CCC---------C-----CCCHHHHHHHHHHccHHH-HHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 011713 326 TNL--DPL---------G-----MYSDNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (479)
Q Consensus 326 eNi--~~~---------~-----~~~~~~i~~a~~~a~l~~-~i~~lp~G~~T~vge~G~~LSgGQrQRlaiAR 382 (479)
||+ .+. . ....+.+.++++..++.+ ...+.| ..|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 887 321 1 112457888999988865 444444 458998888999987
No 143
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.40 E-value=1.7e-15 Score=149.08 Aligned_cols=136 Identities=16% Similarity=0.191 Sum_probs=95.0
Q ss_pred ccEEEEeEEEEeCCCCCceeeeeeEEe-------------------eCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCc
Q 011713 231 GRIELEDLKVRYRPNTPLVLKGITCTF-------------------KEGTRVGVVGRTGSGKTTLISALFRLVE--PENG 289 (479)
Q Consensus 231 ~~I~~~~vsf~Y~~~~~~vL~~isl~i-------------------~~Ge~vaivG~sGsGKSTL~~lL~g~~~--p~~G 289 (479)
+.|+++||++.|. ++++++++.+ ++|+++||+|+||||||||+++|.|++. |++|
T Consensus 36 ~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 36 EDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp TTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred cccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 4589999999993 5899999998 8999999999999999999999999998 9999
Q ss_pred eEEE---CCeecCCCCHHHHhccceEEcCCCcccc-ccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCcc---cccc
Q 011713 290 RILI---DGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPML---LDSS 362 (479)
Q Consensus 290 ~I~i---~g~~i~~~~~~~lr~~i~~V~Q~~~lF~-gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G---~~T~ 362 (479)
+|.+ ||.+.. ...++.++++ |+..++. -|+.+|+.+ + ..+..| ...+
T Consensus 112 ~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~------------~---------~~l~~~~~~i~~P 165 (308)
T 1sq5_A 112 RVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKF------------V---------SDLKSGVPNVTAP 165 (308)
T ss_dssp CEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHH------------H---------HHHTTTCSCEEEC
T ss_pred eEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHH------------H---------HHHhCCCCceecc
Confidence 9999 997742 2456778888 7655433 256555531 1 011111 1111
Q ss_pred ccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCH
Q 011713 363 VSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDS 402 (479)
Q Consensus 363 vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~ 402 (479)
.-+ .+.+ +|++.+.+.+.+|+++|+|.|....+.
T Consensus 166 ~~~----~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 166 VYS----HLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp CEE----TTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred ccc----cccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 111 1111 333333345677999999999987764
No 144
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.39 E-value=7e-16 Score=149.20 Aligned_cols=142 Identities=19% Similarity=0.126 Sum_probs=103.0
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCC-ccccc-cHH
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP-TLFRG-SVR 325 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~-~lF~g-Ti~ 325 (479)
.+++++++++++| ++|+||+|||||||++.|++.+.+ |.|.++|.++........++++++++|++ ..+.. ++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4799999999999 999999999999999999999887 79999999987766667788899999986 34443 678
Q ss_pred hhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC------
Q 011713 326 TNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA------ 398 (479)
Q Consensus 326 eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TS------ 398 (479)
||+.... .....+. .. ..+....+ -..|||||+||..+++|+..+|++| |||+.
T Consensus 110 Deid~~~~~r~~~~~-~~-----~~~~~~~~-----------l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd 170 (274)
T 2x8a_A 110 DEVDALCPRRSDRET-GA-----SVRVVNQL-----------LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLD 170 (274)
T ss_dssp ETCTTTCC---------------CTTHHHHH-----------HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSC
T ss_pred ehhhhhhcccCCCcc-hH-----HHHHHHHH-----------HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCC
Confidence 8886422 1111110 00 11111111 1358999999999999999999975 99975
Q ss_pred ------CCCHHHHHHHHHHH
Q 011713 399 ------SIDSATDAILQRII 412 (479)
Q Consensus 399 ------aLD~~te~~i~~~l 412 (479)
--|.+....|.+.+
T Consensus 171 ~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHH
Confidence 22556666665544
No 145
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.39 E-value=3.8e-15 Score=139.54 Aligned_cols=129 Identities=18% Similarity=0.187 Sum_probs=105.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC---CCCCceEEE--------CCeecCC-CCHHHHhccceEEcCCC------ccc
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLV---EPENGRILI--------DGLDICS-MGLKDLRTKLSIIPQEP------TLF 320 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~---~p~~G~I~i--------~g~~i~~-~~~~~lr~~i~~V~Q~~------~lF 320 (479)
.+.+++|+|++||||||++++|.+.| .++.|.+.. +|.++.+ ....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999877 789999988 7887763 55678899999999986 455
Q ss_pred cccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccc-cCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 011713 321 RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSV-SDEGENWSVGQRQLFCLGRVLLKRNRILILDEATA 398 (479)
Q Consensus 321 ~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~v-ge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TS 398 (479)
..++.+++. ++++.+++..+.+++++...+.+..+.+ .++|.-++|+ .++++++++++++|+.+++.
T Consensus 84 ~~~v~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 84 GEDVSGEIR------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp TEECHHHHT------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred CeeCchhhC------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 666767653 5788999999999999998877777666 3567788887 56778889999999988764
No 146
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.38 E-value=5.5e-16 Score=146.05 Aligned_cols=144 Identities=10% Similarity=0.114 Sum_probs=61.3
Q ss_pred eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHh-ccC------------CCCCceEEECCeecCCCCHHHHhccceEEcC
Q 011713 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALF-RLV------------EPENGRILIDGLDICSMGLKDLRTKLSIIPQ 315 (479)
Q Consensus 249 vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~-g~~------------~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q 315 (479)
..+++||++++|+.++|+||||||||||+++|+ |++ +|..|++ +|.++...+...+... ..+
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~~ 90 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CSN 90 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HHT
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hhc
Confidence 578999999999999999999999999999999 999 5555654 4544433333333322 123
Q ss_pred CCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCCh--hHHHHH-HHHH-HhhcCCCEE
Q 011713 316 EPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSV--GQRQLF-CLGR-VLLKRNRIL 391 (479)
Q Consensus 316 ~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSg--GQrQRl-aiAR-All~~p~il 391 (479)
+.+++.+++.+|+. + .+.+++.++++... ...+. ..+.| .-+++. .-++ .++..|+..
T Consensus 91 ~~~~~~~~~~~~~~-~--~~~~~i~~~~~~~~------------~vild---~~~~g~~~~~~~~~~~~~~v~v~~~~~~ 152 (231)
T 3lnc_A 91 GEIIEHAEVFGNFY-G--VPRKNLEDNVDKGV------------STLLV---IDWQGAFKFMEMMREHVVSIFIMPPSME 152 (231)
T ss_dssp TCEEEEEEETTEEE-E--EECTTHHHHHHHTC------------EEEEE---CCHHHHHHHHHHSGGGEEEEEEECSCHH
T ss_pred CceehhhhhccccC-C--CCHHHHHHHHHcCC------------eEEEE---cCHHHHHHHHHhcCCCeEEEEEECCcHH
Confidence 33343444444442 1 11233444443311 00000 00001 113333 2222 345677888
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHH
Q 011713 392 ILDEATASIDSATDAILQRIIREE 415 (479)
Q Consensus 392 iLDE~TSaLD~~te~~i~~~l~~~ 415 (479)
+|||++++.|..++..+.+.|.+.
T Consensus 153 ~l~~Rl~~R~~~~~~~i~~rl~~~ 176 (231)
T 3lnc_A 153 ELRRRLCGRRADDSEVVEARLKGA 176 (231)
T ss_dssp HHHHC--------------CHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHH
Confidence 889999999998888777766543
No 147
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.34 E-value=2.2e-13 Score=138.67 Aligned_cols=152 Identities=14% Similarity=0.217 Sum_probs=93.7
Q ss_pred eeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcC
Q 011713 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 329 (479)
Q Consensus 250 L~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~ 329 (479)
-++++|+++.|+.++|||++|||||||++.|++..+ .+.+.+...+ ...+++|+|+.. ..-++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence 579999999999999999999999999999999843 3455444433 346778877651 1123334332
Q ss_pred CCC------CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHH
Q 011713 330 PLG------MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSA 403 (479)
Q Consensus 330 ~~~------~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~ 403 (479)
+.. .... +..+..+.+.. .+.- +|-. .+.-..||+||+||.++||++..+|.|++| +.+|..
T Consensus 215 li~~a~~~~~L~~-~fl~~~era~~--lL~v----vDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGL-EFLRHIARTRV--LLYV----LDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCH-HHHHHHTSSSE--EEEE----EETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhH-HHHHHHHHHHh--hhEE----eCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 111 1111 11111111110 1110 1100 111236899999999999999999999999 889987
Q ss_pred HHHHHHHHHHHH--CCCcEEEEEcc
Q 011713 404 TDAILQRIIREE--FPGSTVITIAH 426 (479)
Q Consensus 404 te~~i~~~l~~~--~~~~TvI~IaH 426 (479)
.. ...+.+.+. ..+.+++.||.
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCT
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEEC
Confidence 65 333333332 23567777763
No 148
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.34 E-value=3.5e-13 Score=131.99 Aligned_cols=102 Identities=13% Similarity=0.092 Sum_probs=70.6
Q ss_pred EEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEE---CCeecCCCCHHHHhccceEEcCCCc-------------
Q 011713 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI---DGLDICSMGLKDLRTKLSIIPQEPT------------- 318 (479)
Q Consensus 255 l~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i---~g~~i~~~~~~~lr~~i~~V~Q~~~------------- 318 (479)
|++.+|+.++|+||||||||||+++|+|+..|++|+|.+ +|.++.........+.+++|+|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999999 9998876542211246999999985
Q ss_pred ---cccc-cHHhhcCCCC----CCCHHHHHHHHHHccH-HHHHHhCCc
Q 011713 319 ---LFRG-SVRTNLDPLG----MYSDNEIWEAMEKCQL-KATISRLPM 357 (479)
Q Consensus 319 ---lF~g-Ti~eNi~~~~----~~~~~~i~~a~~~a~l-~~~i~~lp~ 357 (479)
+|.. |+ +|+.+.. .....++.++++..++ .+...+.|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 4544 77 9987531 2235679999999999 466666663
No 149
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.31 E-value=4.1e-12 Score=116.75 Aligned_cols=152 Identities=14% Similarity=0.123 Sum_probs=98.3
Q ss_pred eEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccc-cHHhhcCC--
Q 011713 254 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDP-- 330 (479)
Q Consensus 254 sl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~g-Ti~eNi~~-- 330 (479)
|+++++|+.++|+||||||||||+++|+|+++ .+.+++.++...+....+..++|++|++.+|.. +..+|+..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 57788999999999999999999999999974 688999888777666668889999999998876 55566532
Q ss_pred --CC---CCCHHHHHHHHHHc----------cHHHHHHhCCccc------------cccccCCCCCCChhHHHHHHHHHH
Q 011713 331 --LG---MYSDNEIWEAMEKC----------QLKATISRLPMLL------------DSSVSDEGENWSVGQRQLFCLGRV 383 (479)
Q Consensus 331 --~~---~~~~~~i~~a~~~a----------~l~~~i~~lp~G~------------~T~vge~G~~LSgGQrQRlaiARA 383 (479)
.+ ..+.+++.++++.. ++.......|+.. ..++-++|..-....++|++-++.
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~ 156 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALARE 156 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHH
T ss_pred eeecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 11 12345666665542 3334444444331 112334555445566788888877
Q ss_pred hh---cCCCEEEEeCCCCCCCHH-HHHHHHHHHHH
Q 011713 384 LL---KRNRILILDEATASIDSA-TDAILQRIIRE 414 (479)
Q Consensus 384 ll---~~p~iliLDE~TSaLD~~-te~~i~~~l~~ 414 (479)
.. +.++.+|.++ |.+ +.+.+.+.+..
T Consensus 157 ~~~~~~~~d~vi~n~-----~~~~~~~~l~~~i~~ 186 (205)
T 3tr0_A 157 EMAHYKEFDYLVVND-----NFDQAVQNLIHIISA 186 (205)
T ss_dssp HHTTGGGCSEEEECS-----SHHHHHHHHHHHHHH
T ss_pred HHhcccCCCEEEECC-----CHHHHHHHHHHHHHH
Confidence 65 3467777644 332 34455555543
No 150
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.30 E-value=1.2e-12 Score=127.64 Aligned_cols=142 Identities=18% Similarity=0.104 Sum_probs=99.8
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
+.++++++.|++.. ++++|+ +|+.++++|++||||||++..|++++.+..|+|.+.+.|...-... .
T Consensus 77 ~~~~~l~~~~~~~~----~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~---~---- 143 (295)
T 1ls1_A 77 TVYEALKEALGGEA----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR---E---- 143 (295)
T ss_dssp HHHHHHHHHTTSSC----CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH---H----
T ss_pred HHHHHHHHHHCCCC----ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH---H----
Confidence 55666777775321 678888 9999999999999999999999999999999999998776531110 0
Q ss_pred EcCCCccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEE
Q 011713 313 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILI 392 (479)
Q Consensus 313 V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~ili 392 (479)
++....+.. |++-.- .+......+.||.+|+++...+++++|
T Consensus 144 -------------------------ql~~~~~~~-----------~l~~~~--~~~~~~p~~l~~~~l~~~~~~~~D~vi 185 (295)
T 1ls1_A 144 -------------------------QLRLLGEKV-----------GVPVLE--VMDGESPESIRRRVEEKARLEARDLIL 185 (295)
T ss_dssp -------------------------HHHHHHHHH-----------TCCEEE--CCTTCCHHHHHHHHHHHHHHHTCCEEE
T ss_pred -------------------------HHHHhcccC-----------CeEEEE--cCCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 000011111 111110 011223445678999999889999999
Q ss_pred EeCC-CCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 011713 393 LDEA-TASIDSATDAILQRIIREEFPGSTVITIA 425 (479)
Q Consensus 393 LDE~-TSaLD~~te~~i~~~l~~~~~~~TvI~Ia 425 (479)
+||| ++++|...-..+.+..+....+.+++++.
T Consensus 186 iDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 186 VDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp EECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 9999 99999988777777777666666665553
No 151
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.29 E-value=2.4e-13 Score=129.70 Aligned_cols=108 Identities=18% Similarity=0.165 Sum_probs=83.8
Q ss_pred eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHh---ccCCCCCceEE--------ECCeec-CCCCHHHHhccceEEcCC
Q 011713 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALF---RLVEPENGRIL--------IDGLDI-CSMGLKDLRTKLSIIPQE 316 (479)
Q Consensus 249 vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~---g~~~p~~G~I~--------i~g~~i-~~~~~~~lr~~i~~V~Q~ 316 (479)
++++.+ ++|++|+|+|||||||||++++|+ |++.|++|.|+ .+|.++ .......+++.+++++|+
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444443 789999999999999999999999 99999999999 999998 456788999999999954
Q ss_pred ------CccccccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccC
Q 011713 317 ------PTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSD 365 (479)
Q Consensus 317 ------~~lF~gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge 365 (479)
.+++..++.+||. .+++..++..+..++.+......+...+++
T Consensus 96 ~~~~~~~~l~~~~v~~~i~------~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~ 144 (252)
T 4e22_A 96 QNGQLQVILEGEDVSNEIR------TETVGNTASQAAAFPRVREALLRRQRAFRE 144 (252)
T ss_dssp ETTEEEEEETTEECTTGGG------SHHHHHHHHHHTTSHHHHHHHHHHHHTTCC
T ss_pred CCCCceEEECCeehhHHHH------HHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 5677778888875 356777777777777776655555555544
No 152
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.24 E-value=8e-12 Score=122.19 Aligned_cols=98 Identities=16% Similarity=0.207 Sum_probs=73.0
Q ss_pred eeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCC
Q 011713 253 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG 332 (479)
Q Consensus 253 isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~ 332 (479)
++++.++|+.++|+|++||||||++..|++++.+..|+|.+.+.|.... + ..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------~------------a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------A------------AI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------H------------HH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------H------------HH-------
Confidence 3455678999999999999999999999999999999999988765320 0 01
Q ss_pred CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHH---HHHHHhhcCCCEEEEeCCCC
Q 011713 333 MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF---CLGRVLLKRNRILILDEATA 398 (479)
Q Consensus 333 ~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRl---aiARAll~~p~iliLDE~TS 398 (479)
+++...++..+ +| . + ...|||+.|++ +++||+.++|+++|+|||..
T Consensus 149 ----eqL~~~~~~~g-------l~----~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 ----EQLKIWGERVG-------AT----V-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ----HHHHHHHHHHT-------CE----E-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ----HHHHHHHHHcC-------Cc----E-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 22222222221 11 1 1 23589999999 99999999999999999984
No 153
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.23 E-value=3.1e-12 Score=131.83 Aligned_cols=65 Identities=15% Similarity=0.165 Sum_probs=56.4
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCH
Q 011713 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL 303 (479)
Q Consensus 234 ~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~ 303 (479)
++.++++... .+|+|+||+|++ +++||+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 8 ~l~~l~~~~~----~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 72 (483)
T 3euj_A 8 KFRSLTLINW----NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTS 72 (483)
T ss_dssp EEEEEEEEEE----TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCC
T ss_pred ceeEEEEecc----ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCch
Confidence 4566665431 279999999999 9999999999999999999999999999999999999876543
No 154
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.20 E-value=1.9e-11 Score=119.10 Aligned_cols=138 Identities=14% Similarity=0.127 Sum_probs=90.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCCCCCHH
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDN 337 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~ 337 (479)
++|+.++++|++||||||++..|++.+.+++| +++.++.+|++ ..+..++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eq---------- 152 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQ---------- 152 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHH----------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHH----------
Confidence 47999999999999999999999999998888 24566666663 2222222
Q ss_pred HHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC-
Q 011713 338 EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEF- 416 (479)
Q Consensus 338 ~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~- 416 (479)
+...++..+ +| -... ..++..+.+|+++ ++|+++|+| |+++|+..+..+.+..+-..
T Consensus 153 -L~~~~~~~g-------l~----~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~ 210 (296)
T 2px0_A 153 -LKTYAELLQ-------AP----LEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPF 210 (296)
T ss_dssp -HHHHHTTTT-------CC----CCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCC
T ss_pred -HHHHHHhcC-------CC----eEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhh
Confidence 222222211 11 1111 1234457777764 999999999 99999877655554333221
Q ss_pred --CCcEEEEE--ccCchhhhc-CCEEEEEeCCEEEE
Q 011713 417 --PGSTVITI--AHRVPTITD-SDMVMVLSYGELVE 447 (479)
Q Consensus 417 --~~~TvI~I--aHrl~~i~~-~D~I~vl~~G~Ive 447 (479)
.+.+++++ +|....+.. +|++..++.|.++-
T Consensus 211 ~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 211 ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred cCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 33456666 898776655 77766677777775
No 155
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.17 E-value=9.4e-12 Score=112.94 Aligned_cols=127 Identities=14% Similarity=0.230 Sum_probs=67.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-------------CCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHh
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLVE-------------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~~-------------p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~e 326 (479)
|+.++|+||||||||||+++|+|+++ |..|++ +|.++...+.+.+++.+ .|+.+++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 888886 88887777777766654 3666777777777
Q ss_pred hcCCCCCCCHHHHHHHHHH----------ccHHHHHHh--------------CCccccccccCCCCCCChhHHHHHHHHH
Q 011713 327 NLDPLGMYSDNEIWEAMEK----------CQLKATISR--------------LPMLLDSSVSDEGENWSVGQRQLFCLGR 382 (479)
Q Consensus 327 Ni~~~~~~~~~~i~~a~~~----------a~l~~~i~~--------------lp~G~~T~vge~G~~LSgGQrQRlaiAR 382 (479)
|+ ++ .+.+++.++++. .++.. +.. -++-+..++-++|..-....+||++-|+
T Consensus 76 ~~-yg--~~~~~i~~~l~~g~~~il~~~~~g~~~-l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~ 151 (186)
T 3a00_A 76 NY-YG--STVASVKQVSKSGKTCILDIDMQGVKS-VKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQ 151 (186)
T ss_dssp EE-EE--EEHHHHHHHHHTTCEEEEECCHHHHHH-HHTCGGGCCEEEEEECSCC--------------------------
T ss_pred ee-cc--CcHHHHHHHHHcCCeEEEEEcHHHHHH-HHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 76 22 224455555544 12221 222 1246667777888887788899999999
Q ss_pred Hhh-----cCCCEEEEeC
Q 011713 383 VLL-----KRNRILILDE 395 (479)
Q Consensus 383 All-----~~p~iliLDE 395 (479)
.-+ +.++.+|..+
T Consensus 152 ~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 152 AELAYAETGAHDKVIVND 169 (186)
T ss_dssp -------CCCCSEEEECS
T ss_pred HHHHhhcccCCcEEEECc
Confidence 866 5567777665
No 156
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.16 E-value=2.7e-12 Score=125.29 Aligned_cols=94 Identities=16% Similarity=0.175 Sum_probs=56.8
Q ss_pred EEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEE---CCeecCCCCHHHHhccceEEcCCCcccc-----ccHHh
Q 011713 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI---DGLDICSMGLKDLRTKLSIIPQEPTLFR-----GSVRT 326 (479)
Q Consensus 255 l~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i---~g~~i~~~~~~~lr~~i~~V~Q~~~lF~-----gTi~e 326 (479)
+++.+|++++|+|+||||||||+|.|+|+..|..|+|.+ +|.++.... +.++..+++|+|.|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567799999999999999999999999999999999999 888776533 122223899999997754 467 8
Q ss_pred hcC-CCC-----------------CCCHHHHHHHHHHccHHH
Q 011713 327 NLD-PLG-----------------MYSDNEIWEAMEKCQLKA 350 (479)
Q Consensus 327 Ni~-~~~-----------------~~~~~~i~~a~~~a~l~~ 350 (479)
|+. .++ ......+.++++..++.+
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH
Confidence 882 111 122456888888888754
No 157
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.15 E-value=4.6e-14 Score=142.30 Aligned_cols=169 Identities=14% Similarity=0.109 Sum_probs=108.6
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhc------------cCCCCCceEEECCeecCCCCH-HHHhccc---eEEcCCCcc
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFR------------LVEPENGRILIDGLDICSMGL-KDLRTKL---SIIPQEPTL 319 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g------------~~~p~~G~I~i~g~~i~~~~~-~~lr~~i---~~V~Q~~~l 319 (479)
++++|.+++|||++|+|||||++.|.| ..+|+.|.|.++|..+..+.. ..-++.+ ..+.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 567899999999999999999999999 678999999998843321100 0001112 355566665
Q ss_pred ccc-cHHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCC--CEEEEeCC
Q 011713 320 FRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN--RILILDEA 396 (479)
Q Consensus 320 F~g-Ti~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p--~iliLDE~ 396 (479)
..+ |..+++. .+....++.+.. +..+=+..+ ...-..+||+. +| +++++|||
T Consensus 96 ~~~~s~~e~L~-------~~fl~~ir~~d~---il~Vvd~~~---d~~i~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 96 TKGASTGVGLG-------NAFLSHVRAVDA---IYQVVRAFD---DAEIIHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp CCCCCSSSSSC-------HHHHHHHTTCSE---EEEEEECCC---TTCSSCCSSSS------------CHHHHHHHHHHH
T ss_pred ccCCcHHHHHH-------HHHHHHHHHHHH---HHHHHhccc---cceeeeecccc------------Ccchhhhhchhh
Confidence 543 3333331 122333332221 000000000 11223356552 89 99999999
Q ss_pred CCCCCHHHHHHHHHHHHHH-CC-CcEEEEEccCchhhhc-CCEEE-EEeCC-EEEEecCh
Q 011713 397 TASIDSATDAILQRIIREE-FP-GSTVITIAHRVPTITD-SDMVM-VLSYG-ELVEYDLP 451 (479)
Q Consensus 397 TSaLD~~te~~i~~~l~~~-~~-~~TvI~IaHrl~~i~~-~D~I~-vl~~G-~Ive~G~~ 451 (479)
++.+|++.-.+..+.++.. .+ ++|+ ++|.+..+.. ||++. +|++| +++..|+.
T Consensus 151 l~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 9999999988888888776 44 4554 3999987755 99999 99999 88866653
No 158
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.09 E-value=1.6e-11 Score=111.75 Aligned_cols=141 Identities=16% Similarity=0.136 Sum_probs=78.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCC-----------CCceEEECCeecCC--CCHHHHhccceEEcCCCccccc--cHHh
Q 011713 262 RVGVVGRTGSGKTTLISALFRLVEP-----------ENGRILIDGLDICS--MGLKDLRTKLSIIPQEPTLFRG--SVRT 326 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~~p-----------~~G~I~i~g~~i~~--~~~~~lr~~i~~V~Q~~~lF~g--Ti~e 326 (479)
+++|+|++|||||||++.+.|...| .+|+|.++|.++.- ++....++..++++|...-..+ ++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 7899999999999999999998765 57999999976531 2221222333444332111000 1112
Q ss_pred hcCCCCCCCHHHHHHHHHHccHHHHHHh-CCcccc-ccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHH
Q 011713 327 NLDPLGMYSDNEIWEAMEKCQLKATISR-LPMLLD-SSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSAT 404 (479)
Q Consensus 327 Ni~~~~~~~~~~i~~a~~~a~l~~~i~~-lp~G~~-T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~t 404 (479)
+... .+.+++...++. +.. -+...- -.++.. ..|..-..+...+||++.++|+++++| ||++|...
T Consensus 111 ~~~~---~s~~~~~~~~~~------~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~ 178 (191)
T 1oix_A 111 IAKH---LTYENVERWLKE------LRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTN 178 (191)
T ss_dssp TTCH---HHHHTHHHHHHH------HHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTT
T ss_pred CcCH---HHHHHHHHHHHH------HHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCC
Confidence 1110 011111111111 111 010000 011211 122222223478899999999999999 99999999
Q ss_pred HHHHHHHHHH
Q 011713 405 DAILQRIIRE 414 (479)
Q Consensus 405 e~~i~~~l~~ 414 (479)
-..+.+.|.+
T Consensus 179 v~~l~~~l~~ 188 (191)
T 1oix_A 179 VEAAFQTILT 188 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887764
No 159
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.08 E-value=2.1e-13 Score=132.01 Aligned_cols=136 Identities=18% Similarity=0.131 Sum_probs=97.8
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEE
Q 011713 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (479)
Q Consensus 234 ~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V 313 (479)
+++++...|.. +.+++++++++++| ++|+||+|||||||++.|++... .|.|.++|.++.+......++.++++
T Consensus 51 ~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 51 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 45566666642 35899999999999 99999999999999999999985 89999999887655555567778889
Q ss_pred cCCCc-cccc-cHHhhcC-CCCCC------CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 314 PQEPT-LFRG-SVRTNLD-PLGMY------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 314 ~Q~~~-lF~g-Ti~eNi~-~~~~~------~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
+|++. .+.. ++.||+. +.... ..++..+.+ ..++ ..|||||+||..+++|+
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~-----~~ll---------------~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL---------------VEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHH-----HHHH---------------HHHTTCCTTCCEEEEEE
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH-----HHHH---------------HHHhCCCCCCCEEEEEe
Confidence 99864 3433 6678873 21110 112222221 1122 23789999999999999
Q ss_pred hcCCCEEEEeCCC
Q 011713 385 LKRNRILILDEAT 397 (479)
Q Consensus 385 l~~p~iliLDE~T 397 (479)
..+|++ ||++.
T Consensus 185 t~~p~~--ld~~l 195 (278)
T 1iy2_A 185 TNRPDI--LDPAL 195 (278)
T ss_dssp ESCTTS--SCHHH
T ss_pred cCCchh--CCHhH
Confidence 999987 67764
No 160
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.06 E-value=1.1e-10 Score=126.14 Aligned_cols=132 Identities=22% Similarity=0.195 Sum_probs=94.7
Q ss_pred eEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcC--
Q 011713 254 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD-- 329 (479)
Q Consensus 254 sl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p--~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~-- 329 (479)
|+++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.++...+.++.+++.+|.+.++..+++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 457889999999999999999999999987765 78999 8999999999999999999999999999999999984
Q ss_pred CCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHH
Q 011713 330 PLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQ 409 (479)
Q Consensus 330 ~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~ 409 (479)
++...-..++..+++.+ ++-++++| ||+++|+.++..+.
T Consensus 82 pG~~~f~~~~~~~l~~a----------------------------------------d~~ilVvD-~~~g~~~qt~~~~~ 120 (665)
T 2dy1_A 82 PGYGDFVGEIRGALEAA----------------------------------------DAALVAVS-AEAGVQVGTERAWT 120 (665)
T ss_dssp CCSGGGHHHHHHHHHHC----------------------------------------SEEEEEEE-TTTCSCHHHHHHHH
T ss_pred CCccchHHHHHHHHhhc----------------------------------------CcEEEEEc-CCcccchhHHHHHH
Confidence 33211012333333332 44566666 77777777664443
Q ss_pred HHHHHHCCCcEEEEEccCchh
Q 011713 410 RIIREEFPGSTVITIAHRVPT 430 (479)
Q Consensus 410 ~~l~~~~~~~TvI~IaHrl~~ 430 (479)
.+.. .+.++|++.|++..
T Consensus 121 ~~~~---~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 121 VAER---LGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHH---TTCCEEEEEECGGG
T ss_pred HHHH---ccCCEEEEecCCch
Confidence 3322 25666666776654
No 161
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.06 E-value=1.1e-13 Score=137.72 Aligned_cols=150 Identities=18% Similarity=0.162 Sum_probs=95.1
Q ss_pred EEeEEEEeCCCCCceeeeeeEEeeCC-------cEEEEEcCCCCcHHHHHHHHhccC----CCCCceEEECCeecCCCCH
Q 011713 235 LEDLKVRYRPNTPLVLKGITCTFKEG-------TRVGVVGRTGSGKTTLISALFRLV----EPENGRILIDGLDICSMGL 303 (479)
Q Consensus 235 ~~~vsf~Y~~~~~~vL~~isl~i~~G-------e~vaivG~sGsGKSTL~~lL~g~~----~p~~G~I~i~g~~i~~~~~ 303 (479)
.++++..|+. +.+++++++.+++| +.++|+||+|+|||||++++++.. .|.+|.+..++.++..+..
T Consensus 21 ~~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 21 PKSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp CSSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred CccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 3344444532 34899999999887 899999999999999999999998 7788888877766543211
Q ss_pred HHHhccceEEcCCCccccccHHhhcCCC-CCC--C----HHHHHHHHHHccHHHHHHhCC-cc---ccccccCCCCCCCh
Q 011713 304 KDLRTKLSIIPQEPTLFRGSVRTNLDPL-GMY--S----DNEIWEAMEKCQLKATISRLP-ML---LDSSVSDEGENWSV 372 (479)
Q Consensus 304 ~~lr~~i~~V~Q~~~lF~gTi~eNi~~~-~~~--~----~~~i~~a~~~a~l~~~i~~lp-~G---~~T~vge~G~~LSg 372 (479)
...+..|.+++|...++. ++.|++... .+. + ...-. +. +.. .+| -+ ..+.. ..||+
T Consensus 99 ~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~---~~--i~~---~l~~~~li~at~~~----~~Ls~ 165 (334)
T 1in4_A 99 SLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSA---KS--IRI---DIQPFTLVGATTRS----GLLSS 165 (334)
T ss_dssp HCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC-----------------------CCCEEEEEESCG----GGSCH
T ss_pred HccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCccc---cc--ccc---cCCCeEEEEecCCc----ccCCH
Confidence 112457999999887765 777777311 000 0 00000 00 000 111 12 22332 47999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 011713 373 GQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREE 415 (479)
Q Consensus 373 GQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~ 415 (479)
|+|||++++ ..||+.+...+.+.+++.
T Consensus 166 ~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~ 192 (334)
T 1in4_A 166 PLRSRFGII----------------LELDFYTVKELKEIIKRA 192 (334)
T ss_dssp HHHTTCSEE----------------EECCCCCHHHHHHHHHHH
T ss_pred HHHHhcCce----------------eeCCCCCHHHHHHHHHHH
Confidence 999998665 667777766666666554
No 162
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.05 E-value=1.6e-10 Score=109.00 Aligned_cols=166 Identities=13% Similarity=0.091 Sum_probs=91.5
Q ss_pred eeeee-eEEeeCCcEEEEEcCCCCcHHHHHH-HHhccCCCCCceEEECCeecCCCCHHHHh---ccceEEcCCCcccccc
Q 011713 249 VLKGI-TCTFKEGTRVGVVGRTGSGKTTLIS-ALFRLVEPENGRILIDGLDICSMGLKDLR---TKLSIIPQEPTLFRGS 323 (479)
Q Consensus 249 vL~~i-sl~i~~Ge~vaivG~sGsGKSTL~~-lL~g~~~p~~G~I~i~g~~i~~~~~~~lr---~~i~~V~Q~~~lF~gT 323 (479)
.|+++ .--+++|+.++|+||+|||||||+. ++....+...+.+++++. .+..+++ ..+++.+|+...
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e----~~~~~~~~~~~~~g~~~~~~~~---- 82 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE----EHPVQVRQNMAQFGWDVKPYEE---- 82 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS----SCHHHHHHHHHTTTCCCHHHHH----
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc----CCHHHHHHHHHHcCCCHHHHhh----
Confidence 46665 5678999999999999999999955 555555554555666552 2334433 345555554311
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhh--cCCCEEEEeCCCCCC-
Q 011713 324 VRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL--KRNRILILDEATASI- 400 (479)
Q Consensus 324 i~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll--~~p~iliLDE~TSaL- 400 (479)
.+|+.... ...+.+ + .++. .+..+-+. +....+.+..++.++ .+|+++++|++|+-+
T Consensus 83 -~~~l~~~~-~~~~~~-------~------~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~ 142 (247)
T 2dr3_A 83 -KGMFAMVD-AFTAGI-------G------KSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTLYI 142 (247)
T ss_dssp -HTSEEEEE-CSTTTT-------C------C--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTT
T ss_pred -CCcEEEEe-cchhhc-------c------cccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHhhc
Confidence 11221100 000000 0 0000 00001111 122334444455554 479999999999887
Q ss_pred -CHHHHHHHHHHHHHH--CCCcEEEEEccCchh---------hhcCCEEEEEeC
Q 011713 401 -DSATDAILQRIIREE--FPGSTVITIAHRVPT---------ITDSDMVMVLSY 442 (479)
Q Consensus 401 -D~~te~~i~~~l~~~--~~~~TvI~IaHrl~~---------i~~~D~I~vl~~ 442 (479)
|+.....+...+.+. ..++|+|+++|.... ...||.|+.|+.
T Consensus 143 ~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 143 NKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 553333343444332 247899999998764 345899999964
No 163
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.04 E-value=4.6e-12 Score=118.38 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=52.2
Q ss_pred cEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCH--------
Q 011713 232 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-------- 303 (479)
Q Consensus 232 ~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~-------- 303 (479)
.|+++|++..|.. ++++++ +.++|+||||||||||+++|+|++.|++|+|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~~---------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (227)
T 1qhl_A 9 SLTLINWNGFFAR---------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLH 78 (227)
T ss_dssp EEEEEEETTEEEE---------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CG
T ss_pred EEEEEeeecccCC---------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchh
Confidence 5888988765531 456666 8999999999999999999999999999999999998844332
Q ss_pred HHHhccceEEcCC
Q 011713 304 KDLRTKLSIIPQE 316 (479)
Q Consensus 304 ~~lr~~i~~V~Q~ 316 (479)
...+..+++|+|+
T Consensus 79 ~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 79 GKLKAGVCYSMLD 91 (227)
T ss_dssp GGBCSSEEEEEEE
T ss_pred hHhhcCcEEEEEe
Confidence 2346788999984
No 164
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.03 E-value=5.2e-10 Score=111.46 Aligned_cols=143 Identities=17% Similarity=0.230 Sum_probs=85.7
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE-EECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCCCC
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-LIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMY 334 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I-~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~~ 334 (479)
-+++|+.+.|.||+|||||||+..++.......|.+ +++... ..+. .+.+++++.+|+..++ ...
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~l~i~-----------~~~ 122 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDSLLVS-----------QPD 122 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGGCEEE-----------CCS
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHHeEEe-----------cCC
Confidence 578999999999999999999887776554444443 444421 1111 1222333322221111 001
Q ss_pred CHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcC--CCEEEEeCCCCCC----------CH
Q 011713 335 SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR--NRILILDEATASI----------DS 402 (479)
Q Consensus 335 ~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~--p~iliLDE~TSaL----------D~ 402 (479)
+. .|-+.+++++.++ |+++|+||+++-+ |+
T Consensus 123 ------------------------------------~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 123 ------------------------------------TG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp ------------------------------------SH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred ------------------------------------CH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 11 2334578888765 9999999999998 32
Q ss_pred ---HHHHHHHHHHHHH-----CCCcEEEEEccCch----------------hhh-cCCEEEEEeCCEEEEecC
Q 011713 403 ---ATDAILQRIIREE-----FPGSTVITIAHRVP----------------TIT-DSDMVMVLSYGELVEYDL 450 (479)
Q Consensus 403 ---~te~~i~~~l~~~-----~~~~TvI~IaHrl~----------------~i~-~~D~I~vl~~G~Ive~G~ 450 (479)
...+.+.+.++++ ..++|+|+++|-.. .++ .||.++.+..+++...|+
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 1122333433332 13899999999543 133 489999998887765554
No 165
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=99.02 E-value=6.5e-11 Score=107.92 Aligned_cols=83 Identities=16% Similarity=0.251 Sum_probs=68.2
Q ss_pred EEeeCCcEEEEEcCCCCcHHHHHHHHhccCC-------------CCCceEEECCeecCCCCHHHHhccceEEcCCCcccc
Q 011713 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVE-------------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR 321 (479)
Q Consensus 255 l~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~-------------p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~ 321 (479)
+...+|+.++|+||||||||||++.|++.++ |..|+ +||++..-++.+.+++.+ .|+.+++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 3445899999999999999999999999987 78888 799999999999999876 69999999
Q ss_pred ccHHhhcCCCCCCCHHHHHHHHHH
Q 011713 322 GSVRTNLDPLGMYSDNEIWEAMEK 345 (479)
Q Consensus 322 gTi~eNi~~~~~~~~~~i~~a~~~ 345 (479)
+++.+|. ++ .+.+.+.++++.
T Consensus 89 ~~~~~n~-YG--t~~~~v~~~l~~ 109 (197)
T 3ney_A 89 GSYQGNM-FG--TKFETVHQIHKQ 109 (197)
T ss_dssp EEETTEE-EE--EEHHHHHHHHHT
T ss_pred hhhhcee-cc--cchhhHHHHHhc
Confidence 9999996 44 244556555543
No 166
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.02 E-value=3.8e-13 Score=128.29 Aligned_cols=138 Identities=17% Similarity=0.108 Sum_probs=98.8
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceE
Q 011713 233 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 312 (479)
Q Consensus 233 I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 312 (479)
.+++++.+.|.. +.+++++++++++| ++|+||+|||||||++.+++... .|.|.++|.++.+......++.++.
T Consensus 26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 456677766642 35899999999999 99999999999999999999985 8999999988765555556677888
Q ss_pred EcCCCc-ccc-ccHHhhcC-CCCC------CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 011713 313 IPQEPT-LFR-GSVRTNLD-PLGM------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 383 (479)
Q Consensus 313 V~Q~~~-lF~-gTi~eNi~-~~~~------~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARA 383 (479)
++|+.. .+. -++.||+. +... ...++..+.+ ..++ ..|||||+||..+++|
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-----~~ll---------------~~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL---------------VEMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH-----HHHH---------------HHHHTCCTTCCEEEEE
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH-----HHHH---------------HHHhCCCCCCCEEEEE
Confidence 888764 333 35677773 2111 0112222221 1122 1367999999999999
Q ss_pred hhcCCCEEEEeCCCC
Q 011713 384 LLKRNRILILDEATA 398 (479)
Q Consensus 384 ll~~p~iliLDE~TS 398 (479)
+..+|++ ||++.-
T Consensus 160 ~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 160 ATNRPDI--LDPALL 172 (254)
T ss_dssp EESCGGG--SCGGGG
T ss_pred ccCCchh--CCHHHc
Confidence 9999987 788764
No 167
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.01 E-value=1.8e-11 Score=131.18 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=104.5
Q ss_pred CceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCC-ceEEECCeecCCCCHHHHhccceEEcCCC--------
Q 011713 247 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN-GRILIDGLDICSMGLKDLRTKLSIIPQEP-------- 317 (479)
Q Consensus 247 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~-G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~-------- 317 (479)
..+++++++.+++|+.+.|+||+|+|||||++.|+++.++.. |.+.+++.+.... ...++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 348999999999999999999999999999999999999988 8899988776554 34688887754
Q ss_pred --------------cccc-ccHHhhcCCCC-CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 011713 318 --------------TLFR-GSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 381 (479)
Q Consensus 318 --------------~lF~-gTi~eNi~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiA 381 (479)
+.|. .++.+|+.... ......+... ......+.+..+. ++. .....+|+|++|++..+
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~~--~~~---~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDVR--HDP---FQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEEC--CCC---C----CCCCGGGGEECC
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceEE--ech---hhcCCccccccccccCc
Confidence 2222 24455553211 0000000000 0111122222111 111 11235899999999999
Q ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 011713 382 RVLLKRNRILILDEATASIDSATDAILQRIIRE 414 (479)
Q Consensus 382 RAll~~p~iliLDE~TSaLD~~te~~i~~~l~~ 414 (479)
+....++.+|+|||... |++.....+.+.|++
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999988 799998899998875
No 168
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.99 E-value=1.2e-11 Score=128.37 Aligned_cols=161 Identities=16% Similarity=0.203 Sum_probs=94.5
Q ss_pred eeeEEeeCCcEEEEEcCCCCcHHHHHHHHhc--cCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcC
Q 011713 252 GITCTFKEGTRVGVVGRTGSGKTTLISALFR--LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 329 (479)
Q Consensus 252 ~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g--~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~ 329 (479)
.+++.+.++.++.|+|+|||||||+++.|.. ++.++.|++.+.++|.+......+.. -|+++. ++.+|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~-~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLT-EVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSS-SCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccc-eeecCHH
Confidence 3778889999999999999999999999886 77777899998888877654443321 123221 1111110
Q ss_pred CCC---CCCHHHH---HHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHH----------HHHHHhhcCCC-EEE
Q 011713 330 PLG---MYSDNEI---WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF----------CLGRVLLKRNR-ILI 392 (479)
Q Consensus 330 ~~~---~~~~~~i---~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRl----------aiARAll~~p~-ili 392 (479)
-.. ....+|+ .+.++..|+.++ .+|+..+. ..+||||+||. ++|+++-..|. +++
T Consensus 231 ~a~~~L~~~~~EmerR~~ll~~~Gv~~i-----~~yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 231 DAANALRWCVNEMERRYKLMSALGVRNL-----AGYNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSH-----HHHHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccH-----HHHHHHHH---HHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 000 0000111 122222222111 01211111 13678887752 46777778898 788
Q ss_pred EeCCCCCCCHHHHHHHHHHHH---HHC--CCcEEEEEccCch
Q 011713 393 LDEATASIDSATDAILQRIIR---EEF--PGSTVITIAHRVP 429 (479)
Q Consensus 393 LDE~TSaLD~~te~~i~~~l~---~~~--~~~TvI~IaHrl~ 429 (479)
+||+++.+|... +.+.+.+. +.. .|.++|++|||++
T Consensus 303 IDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 999999888432 23333333 322 2789999999998
No 169
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.98 E-value=5.3e-10 Score=115.69 Aligned_cols=176 Identities=18% Similarity=0.210 Sum_probs=111.5
Q ss_pred eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCc-eEEECCeecCCCCHHHHhccc-eEEcCCCccccccHHh
Q 011713 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RILIDGLDICSMGLKDLRTKL-SIIPQEPTLFRGSVRT 326 (479)
Q Consensus 249 vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G-~I~i~g~~i~~~~~~~lr~~i-~~V~Q~~~lF~gTi~e 326 (479)
.|+++..-+++|+.+.|.|++|+|||||+.-+++...+..| .|.+.+. +.+..++++++ +....-+ . +
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~~------~-~ 261 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNIN------A-Q 261 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTCC------H-H
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCCC------H-H
Confidence 68888878999999999999999999999999988876555 5666553 45566665543 1111100 0 1
Q ss_pred hcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhh--cCCCEEEEeCCCCCCCHH-
Q 011713 327 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL--KRNRILILDEATASIDSA- 403 (479)
Q Consensus 327 Ni~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll--~~p~iliLDE~TSaLD~~- 403 (479)
.+. .+..++++..++.+.+ +.+...|- .+.+ ...+|.+|.+ +.||++. .+|+++|+|+++.-.++.
T Consensus 262 ~l~-~g~l~~~~~~~~~~a~---~~l~~~~l----~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~ 330 (454)
T 2r6a_A 262 NLR-TGKLTPEDWGKLTMAM---GSLSNAGI----YIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGR 330 (454)
T ss_dssp HHH-TSCCCHHHHHHHHHHH---HHHHSSCE----EEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC
T ss_pred HHh-cCCCCHHHHHHHHHHH---HHHhcCCE----EEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCC
Confidence 111 1134555544333322 22333221 1222 2468998876 6778777 579999999999877431
Q ss_pred ---H----HHHHHHHHHHHC--CCcEEEEEcc-----------Cch--------hh-hcCCEEEEEeCCEE
Q 011713 404 ---T----DAILQRIIREEF--PGSTVITIAH-----------RVP--------TI-TDSDMVMVLSYGEL 445 (479)
Q Consensus 404 ---t----e~~i~~~l~~~~--~~~TvI~IaH-----------rl~--------~i-~~~D~I~vl~~G~I 445 (479)
+ -..+.+.|+.+. .++++|+++| |+. .+ ..||.|++|..++.
T Consensus 331 ~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 331 SKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 1 135555565543 3799999999 132 23 35999999987764
No 170
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.96 E-value=8.5e-11 Score=105.99 Aligned_cols=81 Identities=15% Similarity=0.099 Sum_probs=62.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCceEE----------ECCeecCCCCHHHHhccceEEcCCCccccccHHh
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRIL----------IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-~~G~I~----------i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~e 326 (479)
.+|+.++|+||||||||||+++|++++++ ..|.|. ++|.++..++.+.+++. +.|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999999874 445553 47777777788888774 57899999999999
Q ss_pred hcCCCCCCCHHHHHHHHH
Q 011713 327 NLDPLGMYSDNEIWEAME 344 (479)
Q Consensus 327 Ni~~~~~~~~~~i~~a~~ 344 (479)
|. ++ .+.+.+.++++
T Consensus 80 n~-yg--~~~~~i~~~l~ 94 (180)
T 1kgd_A 80 AM-YG--TKLETIRKIHE 94 (180)
T ss_dssp EE-EE--EEHHHHHHHHH
T ss_pred cc-cc--ccHHHHHHHHH
Confidence 95 32 23455655554
No 171
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.94 E-value=8.6e-12 Score=125.25 Aligned_cols=136 Identities=18% Similarity=0.146 Sum_probs=89.6
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhh
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN 327 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eN 327 (479)
.+|+++++.+++|+.++|+||+|||||||+++|++.+ +|++..-+ .+.+.++..+++++|.+.+| .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~-----~~~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN-----LPLDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS-----SCTTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe-----ccchhHHHHHHHhcchhHHH----HHH
Confidence 4899999999999999999999999999999999964 67776511 11123444588899987653 445
Q ss_pred cCCCCC----C-CHHHHHHHHHHccHHHHHHhC-Cccccc-------------cccCCCCCCChhHHHHHHHHHHhhcCC
Q 011713 328 LDPLGM----Y-SDNEIWEAMEKCQLKATISRL-PMLLDS-------------SVSDEGENWSVGQRQLFCLGRVLLKRN 388 (479)
Q Consensus 328 i~~~~~----~-~~~~i~~a~~~a~l~~~i~~l-p~G~~T-------------~vge~G~~LSgGQrQRlaiARAll~~p 388 (479)
++.... . +.+.+. ....+.+.+... +-..+| .+..+-..+++|.+||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 542211 1 001110 112233333210 000111 233455678999999999998899999
Q ss_pred CEEE-EeCCCC
Q 011713 389 RILI-LDEATA 398 (479)
Q Consensus 389 ~ili-LDE~TS 398 (479)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9988 999997
No 172
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.90 E-value=4.2e-10 Score=103.58 Aligned_cols=105 Identities=21% Similarity=0.205 Sum_probs=63.9
Q ss_pred eeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCC
Q 011713 253 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG 332 (479)
Q Consensus 253 isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~ 332 (479)
+-=++++|+.++|+|+|||||||++++|.+.++ .+.+++||+++|++ +|+....
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~~ 67 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETDK 67 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBCT
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhccc
Confidence 334688899999999999999999999999875 48899999999986 6664322
Q ss_pred -CCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 011713 333 -MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (479)
Q Consensus 333 -~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~T 397 (479)
...+.++.++++...+.+++..+.++.-. ..++.|.++ ..+++++|+|=|.
T Consensus 68 ~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~------~~~~~~~~~--------~~~~~~vi~eg~~ 119 (207)
T 2qt1_A 68 NGFLQYDVLEALNMEKMMSAISCWMESARH------SVVSTDQES--------AEEIPILIIEGFL 119 (207)
T ss_dssp TSCBCCSSGGGBCHHHHHHHHHHHHHHHTT------SSCCC-------------CCCCEEEEECTT
T ss_pred cCCChhHHHHHhHHHHHHHHHHHHHhCCCC------CCcCCCeee--------cCCCCEEEEeehH
Confidence 12221222333334444444433222111 134455443 4567888886443
No 173
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.88 E-value=8.7e-10 Score=100.65 Aligned_cols=136 Identities=16% Similarity=0.186 Sum_probs=72.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC-----CCC------CceEEECCeecC----CCC-HHHHhccceEEcCCCc--c--cc
Q 011713 262 RVGVVGRTGSGKTTLISALFRLV-----EPE------NGRILIDGLDIC----SMG-LKDLRTKLSIIPQEPT--L--FR 321 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~-----~p~------~G~I~i~g~~i~----~~~-~~~lr~~i~~V~Q~~~--l--F~ 321 (479)
+++|+|++|||||||++.++|.. .|+ .|+|.++|.++. +.+ .+.+|+......|+.. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 68999999999999999999974 243 678999997652 222 2233332322223221 1 11
Q ss_pred ccHHhhcCCCCCCCHHHHHHHHHHccHHHHHHh-CCcccc-ccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCC
Q 011713 322 GSVRTNLDPLGMYSDNEIWEAMEKCQLKATISR-LPMLLD-SSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATAS 399 (479)
Q Consensus 322 gTi~eNi~~~~~~~~~~i~~a~~~a~l~~~i~~-lp~G~~-T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSa 399 (479)
.+-. .+.+++...++. +.. .+.+.- -.++.. ..|..-.......||++.++|+++++| |||
T Consensus 87 ~~~~--------~s~~~~~~~~~~------~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~~d--~Sa 149 (199)
T 2f9l_A 87 IAKH--------LTYENVERWLKE------LRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNNLSFIE--TSA 149 (199)
T ss_dssp TTCH--------HHHHTHHHHHHH------HHHHSCTTCEEEEEEEC-TTCGGGCCSCHHHHHHHHHHTTCEEEE--CCT
T ss_pred CcCH--------HHHHHHHHHHHH------HHHhcCCCCeEEEEEEC-cccccccCcCHHHHHHHHHHcCCeEEE--EeC
Confidence 1100 011111111111 111 011100 011211 112111112345699999999999999 999
Q ss_pred CCHHHHHHHHHHHHH
Q 011713 400 IDSATDAILQRIIRE 414 (479)
Q Consensus 400 LD~~te~~i~~~l~~ 414 (479)
+|...-..+.+.|.+
T Consensus 150 l~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 150 LDSTNVEEAFKNILT 164 (199)
T ss_dssp TTCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 999887777766654
No 174
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.76 E-value=6e-10 Score=105.71 Aligned_cols=52 Identities=29% Similarity=0.344 Sum_probs=35.8
Q ss_pred cEEEEeE-EEEeCCCCCceeeeeeEEeeC---CcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 232 RIELEDL-KVRYRPNTPLVLKGITCTFKE---GTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 232 ~I~~~~v-sf~Y~~~~~~vL~~isl~i~~---Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.++++|| +|+|.+ ..++|+|+||+|++ |++++|+|++||||||++++|++.+
T Consensus 17 ~l~~~~~~~~~~~~-~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE-EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC-cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999933 34699999999999 9999999999999999999999855
No 175
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.76 E-value=1.5e-08 Score=104.79 Aligned_cols=123 Identities=20% Similarity=0.233 Sum_probs=80.3
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhh
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN 327 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eN 327 (479)
..++++++++++| +.|+||+|+|||||++.+++.... | ++.-+..+.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~------------------------------~-f~~is~~~~ 85 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV------------------------------P-FFHISGSDF 85 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC------------------------------C-EEEEEGGGT
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC------------------------------C-eeeCCHHHH
Confidence 3677888888888 999999999999999999984310 0 011111111
Q ss_pred cCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC----------
Q 011713 328 LDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT---------- 397 (479)
Q Consensus 328 i~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~T---------- 397 (479)
... .+| .|++++|-.+++|....|.||++||+.
T Consensus 86 ~~~-------------------------------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 86 VEL-------------------------------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp TTC-------------------------------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred HHH-------------------------------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 100 011 267889999999999999999999994
Q ss_pred CCCCHHHHHHHHHHHHHH-----CCCcEEEEEccCchhhh-------cCCEEEEE
Q 011713 398 ASIDSATDAILQRIIREE-----FPGSTVITIAHRVPTIT-------DSDMVMVL 440 (479)
Q Consensus 398 SaLD~~te~~i~~~l~~~-----~~~~TvI~IaHrl~~i~-------~~D~I~vl 440 (479)
++.|.+.++.+.+.+..+ ..+..+|..||++..+. .+|+.+.+
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i 183 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVV 183 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEEC
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeec
Confidence 356666665555555433 23568888999986542 45665544
No 176
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.72 E-value=2.1e-09 Score=98.49 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=41.6
Q ss_pred EEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccc
Q 011713 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF 320 (479)
Q Consensus 255 l~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF 320 (479)
+++++|+.++|+|+|||||||++++|.+++.|+.| +.+ +....+.. ...+..+++++|++..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~ 63 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAF 63 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHH
Confidence 46889999999999999999999999999977666 222 22222211 11223477888876443
No 177
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.70 E-value=5.6e-10 Score=102.28 Aligned_cols=50 Identities=28% Similarity=0.458 Sum_probs=44.9
Q ss_pred eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE--EECCeecC
Q 011713 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI--LIDGLDIC 299 (479)
Q Consensus 249 vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I--~i~g~~i~ 299 (479)
..+..++..++|+.++|+|+|||||||++++|++.+. ..|.+ ++||.++.
T Consensus 14 ~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 14 KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 6788889999999999999999999999999999997 78988 89986554
No 178
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.69 E-value=6.3e-09 Score=104.23 Aligned_cols=142 Identities=18% Similarity=0.157 Sum_probs=82.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC-----------CCCceEEECCeecCCCCHHHHhccceEEcCCCcc----ccccHH-
Q 011713 262 RVGVVGRTGSGKTTLISALFRLVE-----------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL----FRGSVR- 325 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~~-----------p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~l----F~gTi~- 325 (479)
+|+|||++|||||||++.|.|... |..|.|.++|.++. +....|++.|.|.- |..|+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHHH
Confidence 499999999999999999999765 67899999997653 23356776664431 333332
Q ss_pred ----hhcCCCCCCCHHH--HHHHHHHccHHHHHHhC--CccccccccCCCCCCChhHHHHHHHH----HHh-hcCCCEEE
Q 011713 326 ----TNLDPLGMYSDNE--IWEAMEKCQLKATISRL--PMLLDSSVSDEGENWSVGQRQLFCLG----RVL-LKRNRILI 392 (479)
Q Consensus 326 ----eNi~~~~~~~~~~--i~~a~~~a~l~~~i~~l--p~G~~T~vge~G~~LSgGQrQRlaiA----RAl-l~~p~ili 392 (479)
+++.+.-++++.. ..+..+. ..+.+..+ ++----.|+..-..+|+|++||+.++ +++ ..+|++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~--~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQS--SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHH--HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHH--HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 2222111222111 1111111 11222221 11101122444445788899988877 666 444554
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHH
Q 011713 393 LDEATASIDSATDAILQRIIREE 415 (479)
Q Consensus 393 LDE~TSaLD~~te~~i~~~l~~~ 415 (479)
+||||+|.+.-..+.+.|.+.
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHH
Confidence 899999998877777777654
No 179
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.68 E-value=3.3e-09 Score=111.60 Aligned_cols=87 Identities=17% Similarity=0.211 Sum_probs=62.9
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCc-eEE-ECCeecCC-------CCH---HHHhccceEEcCCCcccccc
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RIL-IDGLDICS-------MGL---KDLRTKLSIIPQEPTLFRGS 323 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G-~I~-i~g~~i~~-------~~~---~~lr~~i~~V~Q~~~lF~gT 323 (479)
.+++|+.++|+|+||||||||+++|++.+.|++| +|. +||.++.+ ++. ..+++++++|+|+. +
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l-----~ 439 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI-----T 439 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----H
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----H
Confidence 6789999999999999999999999999999987 784 99977632 222 23456789999873 4
Q ss_pred HHhhcCCCC-----CCCHHHHHHHHHHcc
Q 011713 324 VRTNLDPLG-----MYSDNEIWEAMEKCQ 347 (479)
Q Consensus 324 i~eNi~~~~-----~~~~~~i~~a~~~a~ 347 (479)
..+|+.... ....++++++++..+
T Consensus 440 ~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 440 KNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred hcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 556664211 122355666666655
No 180
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.68 E-value=1.4e-09 Score=97.93 Aligned_cols=98 Identities=17% Similarity=0.246 Sum_probs=62.3
Q ss_pred eeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCe--ecCCCCH----HHHhccceEEcCCCcc-c--c
Q 011713 251 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL--DICSMGL----KDLRTKLSIIPQEPTL-F--R 321 (479)
Q Consensus 251 ~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~--~i~~~~~----~~lr~~i~~V~Q~~~l-F--~ 321 (479)
+++++++.+| .++|+||||||||||+++|.++..+..|...-.+. ++-.... ...+..|.+++|++.- | .
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6789999999 99999999999999999999998887776533321 1111110 0235579999998631 1 0
Q ss_pred ---ccHHhhcC--------C-CCCCCHHHHHHHHHHccHH
Q 011713 322 ---GSVRTNLD--------P-LGMYSDNEIWEAMEKCQLK 349 (479)
Q Consensus 322 ---gTi~eNi~--------~-~~~~~~~~i~~a~~~a~l~ 349 (479)
-+|+..+. . +...+.+++.+.++.+++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~ 136 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMIS 136 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCC
Confidence 12222221 1 1134567777777776653
No 181
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.66 E-value=3.2e-09 Score=97.20 Aligned_cols=61 Identities=21% Similarity=0.212 Sum_probs=44.9
Q ss_pred eEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHH-hccceEEcCCCccc
Q 011713 254 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKLSIIPQEPTLF 320 (479)
Q Consensus 254 sl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~l-r~~i~~V~Q~~~lF 320 (479)
.++.++|+.++|+|+|||||||++++|.+.+ |.+.++|.++.. .... +..+++++|++..+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS--PENIATMQRGIPLTDEDRW 84 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC--HHHHHHHHTTCCCCHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc--HHHHHHHhcCCCCCCcccc
Confidence 3667899999999999999999999999987 899999987753 2222 33578888875543
No 182
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.62 E-value=8.6e-10 Score=114.63 Aligned_cols=138 Identities=17% Similarity=0.126 Sum_probs=96.7
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEE
Q 011713 234 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 313 (479)
Q Consensus 234 ~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V 313 (479)
+++++...|. .+.+++++++++++| +.|+||+|+|||||++.+++... .|.|.++|.++.+......++++..+
T Consensus 42 ~l~~lv~~l~--~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~l 115 (499)
T 2dhr_A 42 ELKEIVEFLK--NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 115 (499)
T ss_dssp HHHHHHHHHH--CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred HHHHHHHHhh--chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHH
Confidence 4455544453 234789999999999 99999999999999999999875 78999999888776555566778888
Q ss_pred cCCCc-cccc-cHHhhcC-CCCC------CCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHh
Q 011713 314 PQEPT-LFRG-SVRTNLD-PLGM------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 384 (479)
Q Consensus 314 ~Q~~~-lF~g-Ti~eNi~-~~~~------~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAl 384 (479)
+|+.. .+.+ .+.|+|. +... ...++..+.+. .++. .|||||+|+..+++|.
T Consensus 116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~-----~LL~---------------~Ldg~~~~~~viviAa 175 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-----QLLV---------------EMDGFEKDTAIVVMAA 175 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHH-----HHHH---------------HGGGCCSSCCCEEEEC
T ss_pred HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHH-----HHHH---------------HhcccccCccEEEEEe
Confidence 88875 3333 5567774 2221 11233333222 1222 2567888888888888
Q ss_pred hcCCCEEEEeCCCCC
Q 011713 385 LKRNRILILDEATAS 399 (479)
Q Consensus 385 l~~p~iliLDE~TSa 399 (479)
..+|++ ||||.-.
T Consensus 176 tn~p~~--LD~aLlr 188 (499)
T 2dhr_A 176 TNRPDI--LDPALLR 188 (499)
T ss_dssp CSCGGG--SCTTTSS
T ss_pred cCChhh--cCccccc
Confidence 888887 8888753
No 183
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.62 E-value=7.4e-09 Score=101.82 Aligned_cols=68 Identities=19% Similarity=0.245 Sum_probs=55.2
Q ss_pred eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCH----HHH-----hccceEE-cCC
Q 011713 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL----KDL-----RTKLSII-PQE 316 (479)
Q Consensus 249 vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~----~~l-----r~~i~~V-~Q~ 316 (479)
++++++|++++|+.++++|++||||||++..|++.+.+..|+|.+.+.|+..... ..| +..+.++ +|.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 3467888899999999999999999999999999999999999999988765431 344 5567777 554
No 184
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.61 E-value=8.1e-09 Score=95.18 Aligned_cols=68 Identities=22% Similarity=0.223 Sum_probs=53.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCceEE----------ECCeecCCCCHHHHhccceEEcCCCccccccHHh
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRIL----------IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-~~G~I~----------i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~e 326 (479)
++|+.++|+||||||||||++.|++.++| ..+.+. .+|++....+...+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999999987 333333 356666666777777765 5778888888877
Q ss_pred hc
Q 011713 327 NL 328 (479)
Q Consensus 327 Ni 328 (479)
|.
T Consensus 83 ~~ 84 (208)
T 3tau_A 83 NY 84 (208)
T ss_dssp EE
T ss_pred cc
Confidence 75
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.59 E-value=5e-08 Score=97.68 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=36.4
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhc--cCCCCCceEEECCe
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR--LVEPENGRILIDGL 296 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g--~~~p~~G~I~i~g~ 296 (479)
.+|++++++++ .|++||++|||||||++.|.| +.++.+|.+.-.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 37999999999 999999999999999999999 77888887765443
No 186
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.52 E-value=4.6e-07 Score=90.00 Aligned_cols=60 Identities=22% Similarity=0.235 Sum_probs=45.9
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE-EECCeecCCCCHHHHhccceEEcCCCc
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-LIDGLDICSMGLKDLRTKLSIIPQEPT 318 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I-~i~g~~i~~~~~~~lr~~i~~V~Q~~~ 318 (479)
-+++|+.+.|.||+|||||||+..+++...+..|.+ ++++.+.. + ..+.+++++.+|+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~-~~ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--D-PVYAKNLGVDLKSLL 117 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--C-HHHHHHHTCCGGGCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--c-hHHHHHcCCchhhhh
Confidence 388999999999999999999999999988888865 66664332 2 235566777766543
No 187
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.50 E-value=5e-09 Score=98.20 Aligned_cols=65 Identities=18% Similarity=0.104 Sum_probs=51.1
Q ss_pred eeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCC------CHHH----HhccceEEcCCCcccc
Q 011713 253 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM------GLKD----LRTKLSIIPQEPTLFR 321 (479)
Q Consensus 253 isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~------~~~~----lr~~i~~V~Q~~~lF~ 321 (479)
-+.+.++|+.++|+|++||||||++++|.++ .|+|.+++.|...+ .... .++.+++++|.+.++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 3445688999999999999999999999998 79999999876432 1211 2467899999887764
No 188
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.47 E-value=4.1e-08 Score=89.99 Aligned_cols=126 Identities=15% Similarity=0.187 Sum_probs=72.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCCCCCHHHHHH
Q 011713 262 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWE 341 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~~i~~ 341 (479)
.++|+|++||||||+.+.|.++ |...+|+ +.+.+.+. ..+ .+.+.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~--------d~~~~~~~-----------------~~~----~~~~~~ 49 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA--------DVVAREVV-----------------AKD----SPLLSK 49 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH--------HHHHHHTT-----------------CSS----CHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch--------HHHHHHHc-----------------cCC----hHHHHH
Confidence 6899999999999999999983 6556654 22211111 000 011111
Q ss_pred HHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEE
Q 011713 342 AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTV 421 (479)
Q Consensus 342 a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~Tv 421 (479)
.. ..+ |+. ...+.|+.+|..+++.++.+|..+-.+ ++.++|...+.+.+.+... .+.++
T Consensus 50 i~---------~~~--------g~~-~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~v 108 (206)
T 1jjv_A 50 IV---------EHF--------GAQ-ILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYT 108 (206)
T ss_dssp HH---------HHH--------CTT-CC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEE
T ss_pred HH---------HHh--------CHH-HhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEE
Confidence 11 111 111 123678999999999999888644332 2345566555555555443 35688
Q ss_pred EEEccCchh---hhcCCEEEEEeC
Q 011713 422 ITIAHRVPT---ITDSDMVMVLSY 442 (479)
Q Consensus 422 I~IaHrl~~---i~~~D~I~vl~~ 442 (479)
|+-+|.+.. .+.||.+++++-
T Consensus 109 v~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 109 LFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp EEECTTTTTTTCGGGCSEEEEEEC
T ss_pred EEEechhhhcCcHhhCCEEEEEEC
Confidence 888887755 366999999853
No 189
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.47 E-value=1.7e-08 Score=100.05 Aligned_cols=54 Identities=20% Similarity=0.312 Sum_probs=49.6
Q ss_pred CccEEEEeEEEEeCCCCCceee--------------eeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 230 HGRIELEDLKVRYRPNTPLVLK--------------GITCTFKEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 230 ~~~I~~~~vsf~Y~~~~~~vL~--------------~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.+.|.|+||+|.||.. +.+|+ |+++.|.+|++++|+|++|+|||||+++|.++.
T Consensus 131 ~~ri~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4679999999999865 45899 999999999999999999999999999999986
No 190
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.46 E-value=1.4e-07 Score=93.11 Aligned_cols=29 Identities=34% Similarity=0.326 Sum_probs=26.0
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
-+++|+.+.|.|++|||||||+..++.-.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 58999999999999999999998887643
No 191
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.45 E-value=7e-08 Score=88.12 Aligned_cols=39 Identities=28% Similarity=0.276 Sum_probs=25.1
Q ss_pred CCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 246 TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 246 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
..++++||||++++|+.++|+|++||||||+++.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 446899999999999999999999999999999999876
No 192
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.42 E-value=2.3e-07 Score=94.32 Aligned_cols=160 Identities=21% Similarity=0.175 Sum_probs=96.0
Q ss_pred EEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHH-HhccceEE
Q 011713 235 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKLSII 313 (479)
Q Consensus 235 ~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~-lr~~i~~V 313 (479)
.++++..|++.. ++++|+ +|+.++++|++||||||++..|++.+.+..|+|.+.+.|...-...+ ++..
T Consensus 79 ~~~L~~~~~~~~----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~---- 148 (425)
T 2ffh_A 79 YEALKEALGGEA----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL---- 148 (425)
T ss_dssp HHHHHHHTTSSC----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH----
T ss_pred HHHHHHHhCCCc----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh----
Confidence 344445554321 467777 89999999999999999999999999999999999888876533221 2210
Q ss_pred cCCCccccccHHhhcCCC---CCCCHHHHHHHHHHccHHHHHHhC-CccccccccCCCCCCCh---hHHHHHHHHHHhhc
Q 011713 314 PQEPTLFRGSVRTNLDPL---GMYSDNEIWEAMEKCQLKATISRL-PMLLDSSVSDEGENWSV---GQRQLFCLGRVLLK 386 (479)
Q Consensus 314 ~Q~~~lF~gTi~eNi~~~---~~~~~~~i~~a~~~a~l~~~i~~l-p~G~~T~vge~G~~LSg---GQrQRlaiARAll~ 386 (479)
.-+.|+... ...+..++. .+.+..+ .++||..+-+..-.++. -..+..+++|++..
T Consensus 149 ---------~~~~gv~v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~p 211 (425)
T 2ffh_A 149 ---------GEKVGVPVLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGP 211 (425)
T ss_dssp ---------HHHHTCCEEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCC
T ss_pred ---------cccCCccEEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCC
Confidence 012244311 122334431 1223333 25788777655444432 35666778888866
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEcc
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAH 426 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaH 426 (479)
++-+|++| ++++.|.... .+.+.+. -+.+-+++|+
T Consensus 212 d~vlLVvD-a~tgq~av~~---a~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 212 DEVLLVLD-AMTGQEALSV---ARAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp SEEEEEEE-GGGTTHHHHH---HHHHHHH-TCCCEEEEES
T ss_pred ceEEEEEe-ccchHHHHHH---HHHHHhc-CCceEEEEeC
Confidence 66677788 5556554422 1233332 2457777775
No 193
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.39 E-value=3.2e-07 Score=91.66 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=49.2
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHCCCcEEEEEc--cCch
Q 011713 368 ENWSVGQRQLFCLGRVLLKRNRILILD-EATASIDSATDAILQRIIREEFPGSTVITIA--HRVP 429 (479)
Q Consensus 368 ~~LSgGQrQRlaiARAll~~p~iliLD-E~TSaLD~~te~~i~~~l~~~~~~~TvI~Ia--Hrl~ 429 (479)
..+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.....++.+|+|. |++.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 357899999887 66666777788999 9999999998888888887766688888888 6664
No 194
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.37 E-value=7.3e-07 Score=87.93 Aligned_cols=103 Identities=16% Similarity=0.183 Sum_probs=65.3
Q ss_pred eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhc
Q 011713 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL 328 (479)
Q Consensus 249 vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi 328 (479)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....+.|.+ ++
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~-------------------fS-------------- 81 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAV-------------------FS-------------- 81 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEE-------------------EE--------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE-------------------Ee--------------
Confidence 466665578999999999999999999998887654433333332 11
Q ss_pred CCCCCCCHHHHHH----HHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCCCCCC
Q 011713 329 DPLGMYSDNEIWE----AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEATASID 401 (479)
Q Consensus 329 ~~~~~~~~~~i~~----a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~TSaLD 401 (479)
.+.+.+++.. +.....++.... ..||++++||++.|...+.+++++|.|+|..++|
T Consensus 82 ---lEms~~ql~~Rlls~~~~v~~~~l~~--------------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 82 ---LEMSAEQLALRALSDLTSINMHDLES--------------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ---SSSCHHHHHHHHHHHHHCCCHHHHHH--------------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ---CCCCHHHHHHHHHHHhhCCCHHHHhc--------------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 1223333322 111222222111 1578888888888888888888888888765543
No 195
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.37 E-value=4e-07 Score=99.97 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=50.7
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHCCC-cEEEE-EccCchhhh
Q 011713 369 NWSVGQRQLFCLGRVLLKRNRILILDEATA-SIDSATDAILQRIIREEFPG-STVIT-IAHRVPTIT 432 (479)
Q Consensus 369 ~LSgGQrQRlaiARAll~~p~iliLDE~TS-aLD~~te~~i~~~l~~~~~~-~TvI~-IaHrl~~i~ 432 (479)
-+|+|+.+|..++++++.+++++|+|||.. +||.+.-..+.+.+....++ +++++ .||....+.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH
Confidence 468999999999999999999999999997 89988766666666665544 55555 488876554
No 196
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.34 E-value=6.5e-07 Score=91.15 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=36.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC 299 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~ 299 (479)
++..++++|++||||||++..|++.+.+..++|.+-+.|..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 47899999999999999999999999999999998777653
No 197
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.30 E-value=1.6e-07 Score=89.61 Aligned_cols=59 Identities=17% Similarity=0.135 Sum_probs=49.2
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEEEe
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMVLS 441 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~vl~ 441 (479)
|++|||||..+|++++||||| |+++...+.+ ....++|+++++|..+....|||+++|.
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETALR---AAETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---HHHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---HHccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 899999999999999999999 9988554443 3345899999999999777788876664
No 198
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.26 E-value=1.7e-07 Score=98.90 Aligned_cols=58 Identities=28% Similarity=0.407 Sum_probs=46.9
Q ss_pred EEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECC
Q 011713 235 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 295 (479)
Q Consensus 235 ~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g 295 (479)
++++..+|.. ..+++++++++ +|+.+.|+||+|+|||||++.|.+...+..|+|.++|
T Consensus 86 ~~~vk~~i~~--~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 86 LEKVKERILE--YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp CHHHHHHHHH--HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHHHHHH--HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 3444444421 23678888888 8999999999999999999999999998888887766
No 199
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.26 E-value=2.4e-07 Score=84.66 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=41.5
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCH
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL 303 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~ 303 (479)
..++|+.++|+|+|||||||+++.|.+++++..|.|.+.+.|....+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~ 65 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVER 65 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCH
Confidence 357899999999999999999999999999999999888776655443
No 200
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.24 E-value=3.1e-07 Score=81.75 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=40.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhc-cceEEcCC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT-KLSIIPQE 316 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~-~i~~V~Q~ 316 (479)
.+|+.++|+|++||||||+++.|.+.+ |.+.+|+.++.. ...+++ .+++++|+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLND 59 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCc
Confidence 469999999999999999999999876 889999877653 222332 35555554
No 201
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.17 E-value=8.7e-07 Score=88.00 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=25.8
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g~ 283 (479)
-+++|+.+.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999988875
No 202
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.16 E-value=1.3e-07 Score=86.05 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCee
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD 297 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~ 297 (479)
...|+|+|++||||||+.+.|... |...+|.-+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 457999999999999999999986 667776543
No 203
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.14 E-value=4e-07 Score=89.18 Aligned_cols=45 Identities=24% Similarity=0.412 Sum_probs=36.9
Q ss_pred eeeeeeEEeeCCc------EEEEEcCCCCcHHHHHHHHhccCC--CCCceEEE
Q 011713 249 VLKGITCTFKEGT------RVGVVGRTGSGKTTLISALFRLVE--PENGRILI 293 (479)
Q Consensus 249 vL~~isl~i~~Ge------~vaivG~sGsGKSTL~~lL~g~~~--p~~G~I~i 293 (479)
.|++++..+.+++ .+||+|+|||||||++++|.+++. |++|.+.+
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 6777777777776 899999999999999999999987 45555443
No 204
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.12 E-value=3.7e-06 Score=84.33 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=32.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHC----CCcEEEEEccCchh
Q 011713 386 KRNRILILDEATASIDSATDAILQRIIREEF----PGSTVITIAHRVPT 430 (479)
Q Consensus 386 ~~p~iliLDE~TSaLD~~te~~i~~~l~~~~----~~~TvI~IaHrl~~ 430 (479)
.+|.+++|||+... |+.....+.+.+.+.. .+.++|++||+...
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 45789999999887 7777666666664432 36788889998854
No 205
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.11 E-value=8.4e-07 Score=82.85 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=49.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHh---ccCCCCCceEE--------ECCeecCCCC-HHHHhccceEEc------CCCcccc
Q 011713 260 GTRVGVVGRTGSGKTTLISALF---RLVEPENGRIL--------IDGLDICSMG-LKDLRTKLSIIP------QEPTLFR 321 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~---g~~~p~~G~I~--------i~g~~i~~~~-~~~lr~~i~~V~------Q~~~lF~ 321 (479)
.-.++|+|||||||||+++.|. |+...+.|.++ -.|+++.+.. ...+-+.+.+.. |..+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 4589999999999999999998 55556677763 4576666543 445666666666 4566666
Q ss_pred ccHHhhcC
Q 011713 322 GSVRTNLD 329 (479)
Q Consensus 322 gTi~eNi~ 329 (479)
..+.+||.
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 67766664
No 206
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.08 E-value=6.3e-07 Score=88.81 Aligned_cols=43 Identities=30% Similarity=0.315 Sum_probs=38.2
Q ss_pred ceeeeeeEEeeCCcE--EEEEcCCCCcHHHHHHHHhccCCCCCce
Q 011713 248 LVLKGITCTFKEGTR--VGVVGRTGSGKTTLISALFRLVEPENGR 290 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~--vaivG~sGsGKSTL~~lL~g~~~p~~G~ 290 (479)
.+++.++..++.|+. +.+.||+|+||||+++.+++...+..+.
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 488999999999988 9999999999999999999987765543
No 207
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.04 E-value=8e-06 Score=78.97 Aligned_cols=71 Identities=8% Similarity=0.007 Sum_probs=45.9
Q ss_pred ChhHHHHHHHHHHhhcCCCEEEEeCCCCCCCHHH----------HHHHHHHHHHHC-----CCcEEEEEccCchhh----
Q 011713 371 SVGQRQLFCLGRVLLKRNRILILDEATASIDSAT----------DAILQRIIREEF-----PGSTVITIAHRVPTI---- 431 (479)
Q Consensus 371 SgGQrQRlaiARAll~~p~iliLDE~TSaLD~~t----------e~~i~~~l~~~~-----~~~TvI~IaHrl~~i---- 431 (479)
++++++|-.+++|...+|.+|++||+.+-++... ...+...+.... .+..+|.+|+++..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 3577788888888888999999999988765421 223444444432 124566778886533
Q ss_pred -hcCCEEEEEe
Q 011713 432 -TDSDMVMVLS 441 (479)
Q Consensus 432 -~~~D~I~vl~ 441 (479)
+.+++++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 4577766653
No 208
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.04 E-value=5.4e-07 Score=80.53 Aligned_cols=41 Identities=34% Similarity=0.412 Sum_probs=34.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCCCCc--eEEECCeecC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPENG--RILIDGLDIC 299 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G--~I~i~g~~i~ 299 (479)
++|+.++|+|++||||||++++|.+.+.| .| .|.+||..++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 47999999999999999999999998876 66 6777765443
No 209
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.01 E-value=7.5e-06 Score=84.03 Aligned_cols=65 Identities=18% Similarity=0.396 Sum_probs=44.5
Q ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHHHHHC-CCcEEEEEccCch-hhhc-CCEEEE-EeCCEEEEecCh
Q 011713 387 RNRILILDEATASIDS-ATDAILQRIIREEF-PGSTVITIAHRVP-TITD-SDMVMV-LSYGELVEYDLP 451 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~-~te~~i~~~l~~~~-~~~TvI~IaHrl~-~i~~-~D~I~v-l~~G~Ive~G~~ 451 (479)
+|++|++||+..-.+. .+...+...+.... .++++|+.||+.. .+.. .+++.- ++.|.+++.+.+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 8999999999887764 56667778877643 5788999999843 3322 233332 566777766554
No 210
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.98 E-value=1.7e-06 Score=95.47 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=29.2
Q ss_pred EEeeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 011713 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEP 286 (479)
Q Consensus 255 l~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p 286 (479)
+.+++|+.+.|+||+|||||||+++|++.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46899999999999999999999999998754
No 211
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.98 E-value=1.7e-06 Score=78.54 Aligned_cols=58 Identities=26% Similarity=0.327 Sum_probs=39.4
Q ss_pred EEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhc----cC----CCCCceEEECCeec
Q 011713 239 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR----LV----EPENGRILIDGLDI 298 (479)
Q Consensus 239 sf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g----~~----~p~~G~I~i~g~~i 298 (479)
+|+|++-. .+++++|++.+++ +|+++|++|+|||||++.+.+ .| .++.+.+.++|.++
T Consensus 6 ~~~~~~~~-~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l 71 (198)
T 1f6b_A 6 DWIYSGFS-SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71 (198)
T ss_dssp -------C-HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred HHHHHHHH-HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence 46676543 4899999998887 689999999999999999986 22 33456677776543
No 212
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.96 E-value=4.1e-05 Score=71.56 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=24.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCc
Q 011713 262 RVGVVGRTGSGKTTLISALFRLVEPENG 289 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~~p~~G 289 (479)
+|+|+|++|+|||||++.|+|-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999987766555
No 213
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.92 E-value=1.3e-06 Score=79.91 Aligned_cols=69 Identities=23% Similarity=0.220 Sum_probs=44.3
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCceE----------EECCeecCCCCHHHHhccceEEcCCCccccccH
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRI----------LIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSV 324 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p-~~G~I----------~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi 324 (479)
+..+|..++|+|+|||||||+++.|...++. ..+.+ .++|.+..-++.+.+++.+ .|..+++.+..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~ 84 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKL---KEGQFLEFDKY 84 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHH---HTTCEEEEEEE
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHH---HcCCCEEeHHh
Confidence 4578999999999999999999999987742 11211 1356555556666665442 34444444444
Q ss_pred Hhh
Q 011713 325 RTN 327 (479)
Q Consensus 325 ~eN 327 (479)
..|
T Consensus 85 ~~~ 87 (204)
T 2qor_A 85 ANN 87 (204)
T ss_dssp TTE
T ss_pred CCC
Confidence 444
No 214
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.90 E-value=4.6e-06 Score=81.17 Aligned_cols=144 Identities=17% Similarity=0.105 Sum_probs=74.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEC-CeecCCCCHHHHhccceEEcCCCccccccHHhhcCCCCCCCHH
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID-GLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDN 337 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~-g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~~~~~~~~~ 337 (479)
++.+|||||++|+|||||++.|+|.- +.+. +.+ ....++..++++++..-+ ++.| +++. ..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~-----~tTr~~~~gi~~~~~~~i--~~iD--TpG~--~~- 68 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKA-----QTTRHRIVGIHTEGAYQA--IYVD--TPGL--HM- 68 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCS-----SCCSSCEEEEEEETTEEE--EEES--SSSC--CH-
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCC-----CcceeeEEEEEEECCeeE--EEEE--CcCC--Cc-
Confidence 34589999999999999999999863 2221 111 111234567777764311 0111 1221 10
Q ss_pred HHHHHHHHccHHHHHHhCCc---cccccc--cCCCCCCChhHHHHHHHHHHhh--cCCCEEEEeCCCCCCCHHH-HHHHH
Q 011713 338 EIWEAMEKCQLKATISRLPM---LLDSSV--SDEGENWSVGQRQLFCLGRVLL--KRNRILILDEATASIDSAT-DAILQ 409 (479)
Q Consensus 338 ~i~~a~~~a~l~~~i~~lp~---G~~T~v--ge~G~~LSgGQrQRlaiARAll--~~p~iliLDE~TSaLD~~t-e~~i~ 409 (479)
+-...+.. ++...... ..|..+ -+... +|+|++ .+++++. ..|.++++ +-+|... ...+.
T Consensus 69 ~~~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~ 136 (301)
T 1ega_A 69 EEKRAINR----LMNKAASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLL 136 (301)
T ss_dssp HHHHHHHH----HHTCCTTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHH
T ss_pred cchhhHHH----HHHHHHHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHH
Confidence 11111111 12111122 222221 22223 898886 5667666 67888888 5677765 44455
Q ss_pred HHHHHHCC--C--cEEEEEccCchhhh
Q 011713 410 RIIREEFP--G--STVITIAHRVPTIT 432 (479)
Q Consensus 410 ~~l~~~~~--~--~TvI~IaHrl~~i~ 432 (479)
+.+.++.+ + .++.+.||.-..+.
T Consensus 137 ~~l~~l~~~~~~~~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 137 PHLQFLASQMNFLDIVPISAETGLNVD 163 (301)
T ss_dssp HHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred HHHHHHHHhcCcCceEEEECCCCCCHH
Confidence 55554432 2 35555567655443
No 215
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.90 E-value=3.7e-06 Score=84.01 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=26.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCCCC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPEN 288 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~ 288 (479)
+++..+.|.||+|+|||||++.+++...+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999998876543
No 216
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.89 E-value=5.2e-05 Score=71.63 Aligned_cols=43 Identities=28% Similarity=0.360 Sum_probs=28.4
Q ss_pred eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECC
Q 011713 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 295 (479)
Q Consensus 249 vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g 295 (479)
.++++++..++| +.|+||+|+||||+++.+++.+... -+.+++
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~ 78 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISG 78 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeH
Confidence 344555555555 9999999999999999999876422 344544
No 217
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.89 E-value=5.4e-06 Score=85.11 Aligned_cols=61 Identities=28% Similarity=0.494 Sum_probs=40.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC------------CCCceEEECCeecCCCCHHHHhccceEEcCCCcccc
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLVE------------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR 321 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~~------------p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~ 321 (479)
-++||||++|+|||||++.|+|... |.+|.+.++|.++.-++...+|+..++.+|....|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence 4799999999999999999999853 788999999998766666666666666667666554
No 218
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.88 E-value=1.8e-05 Score=77.51 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=29.5
Q ss_pred eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhc
Q 011713 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 249 vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g 282 (479)
.|+++.--+++|+.+.|.|++|+|||||+.-++.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 5777766689999999999999999999887764
No 219
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.87 E-value=4.5e-06 Score=77.87 Aligned_cols=44 Identities=23% Similarity=0.361 Sum_probs=32.5
Q ss_pred eeeeeEEee---CCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEC
Q 011713 250 LKGITCTFK---EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID 294 (479)
Q Consensus 250 L~~isl~i~---~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~ 294 (479)
|.++|++++ +|..++|.|++||||||+++.|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 455555555 8999999999999999999999999988 6666544
No 220
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.86 E-value=2e-06 Score=85.27 Aligned_cols=52 Identities=27% Similarity=0.369 Sum_probs=47.0
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecC
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC 299 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~ 299 (479)
.+++++++++++|.+++|+|++|+|||||++.|++.+.+..|+|.+-+.|..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 3788999999999999999999999999999999999988898888776654
No 221
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.85 E-value=1.1e-05 Score=75.49 Aligned_cols=130 Identities=17% Similarity=0.152 Sum_probs=70.2
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCccccc-cHHhhcCC--CCC
Q 011713 257 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDP--LGM 333 (479)
Q Consensus 257 i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~g-Ti~eNi~~--~~~ 333 (479)
+.+|+.+.++|+|||||||++.+++.-.....|. ...+.++.|.|..... ++.+|+.. +..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 4579999999999999999887664321111111 1345667777764332 55555531 100
Q ss_pred CCHHHHHHHHHHccHHHHHHhCCccccccccC----CCCC---CChhHHHHHHHHHHhhcCCCEEEEeCCCC-CCCHHHH
Q 011713 334 YSDNEIWEAMEKCQLKATISRLPMLLDSSVSD----EGEN---WSVGQRQLFCLGRVLLKRNRILILDEATA-SIDSATD 405 (479)
Q Consensus 334 ~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge----~G~~---LSgGQrQRlaiARAll~~p~iliLDE~TS-aLD~~te 405 (479)
. ....|+...... .+.. -+.|.-.+. .+.-+++-+++|+||+-. ++|....
T Consensus 137 ~-------------------~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~ 195 (235)
T 3llm_A 137 P-------------------GKSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFL 195 (235)
T ss_dssp T-------------------TSSEEEEETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHH
T ss_pred c-------------------CceEEEeechhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHH
Confidence 0 001122111110 1111 244655554 344689999999999976 4776665
Q ss_pred HHHHHHHHHHCCCcEEEE
Q 011713 406 AILQRIIREEFPGSTVIT 423 (479)
Q Consensus 406 ~~i~~~l~~~~~~~TvI~ 423 (479)
....+.+....++..+|+
T Consensus 196 ~~~l~~i~~~~~~~~~il 213 (235)
T 3llm_A 196 LVVLRDVVQAYPEVRIVL 213 (235)
T ss_dssp HHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHhhCCCCeEEE
Confidence 444455544444443333
No 222
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.84 E-value=8.5e-05 Score=73.84 Aligned_cols=46 Identities=28% Similarity=0.296 Sum_probs=32.8
Q ss_pred eeeeeeEE---eeCCcEEEEEcCCCCcHHHHHHHHhccCCCCC-ceEEECC
Q 011713 249 VLKGITCT---FKEGTRVGVVGRTGSGKTTLISALFRLVEPEN-GRILIDG 295 (479)
Q Consensus 249 vL~~isl~---i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~-G~I~i~g 295 (479)
-|+.+ +. +++|+.+.|.|++|||||||+.-++.-..... ..++++.
T Consensus 50 ~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 50 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 45554 33 88999999999999999999987775443222 3444554
No 223
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.83 E-value=6.9e-06 Score=72.59 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 295 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g 295 (479)
.|+.++|+|++||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998754 56665
No 224
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.82 E-value=2.6e-06 Score=78.29 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=38.1
Q ss_pred EEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCc--eEEECCee
Q 011713 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG--RILIDGLD 297 (479)
Q Consensus 255 l~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G--~I~i~g~~ 297 (479)
+.+++|..++|+|++||||||+++.|.+.+.|..| .+.+||.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 45788999999999999999999999999988888 88888643
No 225
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.78 E-value=3.3e-05 Score=75.01 Aligned_cols=32 Identities=25% Similarity=0.216 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCceE
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLVEPENGRI 291 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I 291 (479)
...+.|+||+|+||||+++.+.+...+.+|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 35789999999999999999999987766643
No 226
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.77 E-value=0.00011 Score=75.55 Aligned_cols=172 Identities=18% Similarity=0.286 Sum_probs=97.4
Q ss_pred eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCc-eE-EECCeecCCCCHHHHhccceEEcCCCccccccHHh
Q 011713 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RI-LIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 326 (479)
Q Consensus 249 vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G-~I-~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~e 326 (479)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....| .+ ++.. +.+.+++..++- .+...+-...+++
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl----E~~~~~l~~R~~--~~~~~i~~~~l~~ 262 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL----EMPAAQLTLRMM--CSEARIDMNRVRL 262 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES----SSCHHHHHHHHH--HHHTTCCTTTCCG
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC----CCCHHHHHHHHH--HHHcCCCHHHHhC
Confidence 46666655899999999999999999999888766543323 33 3333 466666665531 0000000001111
Q ss_pred hcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhh--cCCCEEEEeCCCCCCCH--
Q 011713 327 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL--KRNRILILDEATASIDS-- 402 (479)
Q Consensus 327 Ni~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll--~~p~iliLDE~TSaLD~-- 402 (479)
+..++++..+..+.+ +.+...|-- +-+ ...+|..+ ..+.+|.+. ++++++|+|..+.-.+.
T Consensus 263 -----g~l~~~~~~~~~~a~---~~l~~~~l~----i~d-~~~~s~~~--l~~~~~~l~~~~~~~lIvID~l~~~~~~~~ 327 (444)
T 2q6t_A 263 -----GQLTDRDFSRLVDVA---SRLSEAPIY----IDD-TPDLTLME--VRARARRLVSQNQVGLIIIDYLQLMSGPGS 327 (444)
T ss_dssp -----GGCCHHHHHHHHHHH---HHHHTSCEE----EEC-CTTCBHHH--HHHHHHHHHHHSCCCEEEEECGGGCBCC--
T ss_pred -----CCCCHHHHHHHHHHH---HHHhcCCEE----EEC-CCCCCHHH--HHHHHHHHHHHcCCCEEEEcChhhcCCCcC
Confidence 124555544433332 223333311 111 13455554 456777776 47999999999865543
Q ss_pred ----HH-H---HHHHHHHHHHC--CCcEEEEEccC-------------ch------hh-hcCCEEEEEe
Q 011713 403 ----AT-D---AILQRIIREEF--PGSTVITIAHR-------------VP------TI-TDSDMVMVLS 441 (479)
Q Consensus 403 ----~t-e---~~i~~~l~~~~--~~~TvI~IaHr-------------l~------~i-~~~D~I~vl~ 441 (479)
.+ . ..+...|+.+. .++++|+++|- ++ .+ ..||.|+.|.
T Consensus 328 ~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 328 GKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 11 1 24445555443 27899999981 11 12 3599999985
No 227
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.75 E-value=7.2e-06 Score=81.53 Aligned_cols=43 Identities=26% Similarity=0.418 Sum_probs=37.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 300 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~ 300 (479)
+++.+|+|+|++|||||||++.|.|.+.|.+|+|.+.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 3578999999999999999999999999999999988876553
No 228
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.75 E-value=2.3e-05 Score=76.82 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCCC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLVEPE 287 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~~p~ 287 (479)
++..+.|.||+|+|||||++.+.+...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35689999999999999999999876543
No 229
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.73 E-value=1.9e-05 Score=71.01 Aligned_cols=48 Identities=27% Similarity=0.421 Sum_probs=28.1
Q ss_pred eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhc----cCCC----CCceEEECCee
Q 011713 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR----LVEP----ENGRILIDGLD 297 (479)
Q Consensus 249 vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g----~~~p----~~G~I~i~g~~ 297 (479)
++++++++.++. +|+++|++|+|||||++.+.+ .|.| +.+.+.++|..
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 68 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIK 68 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEE
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEE
Confidence 788999988777 899999999999999999997 2333 34556666643
No 230
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.72 E-value=2.5e-05 Score=70.89 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCC
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLVEPE 287 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~~p~ 287 (479)
..+.|.||+|+|||||++.++......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999999876543
No 231
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.68 E-value=0.00013 Score=69.89 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=24.9
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 257 FKEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 257 i~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
++++..+.|.||+|+|||||++.+++.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4667889999999999999999998865
No 232
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.68 E-value=2.7e-05 Score=68.82 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
++|.+++|||++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999999864
No 233
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.66 E-value=8.4e-06 Score=80.65 Aligned_cols=43 Identities=23% Similarity=0.306 Sum_probs=34.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchh
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPT 430 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~ 430 (479)
++.++++|| ...+++.....+.+.+++...+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 567999999 6778888888899998886666667778877654
No 234
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.60 E-value=0.00017 Score=70.02 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=27.7
Q ss_pred EEeeCCcEEEEEcCCCCcHHHHHHHHhccCC
Q 011713 255 CTFKEGTRVGVVGRTGSGKTTLISALFRLVE 285 (479)
Q Consensus 255 l~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~ 285 (479)
+.++++..+.|.||+|+|||||++.+++...
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 4568899999999999999999999998763
No 235
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.56 E-value=9.7e-05 Score=76.09 Aligned_cols=57 Identities=11% Similarity=0.165 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhh
Q 011713 372 VGQRQLFCLGRVLLKRNRILILDEAT-ASIDSATDAILQRIIREEFPGSTVITIAHRVPTI 431 (479)
Q Consensus 372 gGQrQRlaiARAll~~p~iliLDE~T-SaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i 431 (479)
+.|.+....++..+++++++|+.... ..+... ...+.+.+++ .++.+|++.++....
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH--cCCCEEEEEECccch
Confidence 35888888999999999987765444 344444 3456566654 578899999887754
No 236
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.55 E-value=2.3e-05 Score=72.69 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLVEP 286 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~~p 286 (479)
++..+.|.||+|+||||+++.+...+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999876643
No 237
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.54 E-value=4.8e-06 Score=75.56 Aligned_cols=68 Identities=15% Similarity=0.263 Sum_probs=37.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc------cCCCCCceEEECCe--ecCCCCH--------HHHhccceEEcCCCccccccHH
Q 011713 262 RVGVVGRTGSGKTTLISALFR------LVEPENGRILIDGL--DICSMGL--------KDLRTKLSIIPQEPTLFRGSVR 325 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g------~~~p~~G~I~i~g~--~i~~~~~--------~~lr~~i~~V~Q~~~lF~gTi~ 325 (479)
.|+|+|++||||||+++.|.. +.+|..|...++.. +-...+. ..+++....+.|+..+++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 689999999999999999998 34444443222211 0000110 0123334556677778888887
Q ss_pred hhcC
Q 011713 326 TNLD 329 (479)
Q Consensus 326 eNi~ 329 (479)
+|+.
T Consensus 82 ~~~~ 85 (205)
T 2jaq_A 82 EDPI 85 (205)
T ss_dssp THHH
T ss_pred hhHH
Confidence 7764
No 238
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.54 E-value=1.5e-05 Score=77.31 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=42.5
Q ss_pred eeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCC
Q 011713 253 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 300 (479)
Q Consensus 253 isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~ 300 (479)
++++.+ |+.++++|++|+||||++..|++.+.+..|+|.+.+.|...
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 677766 99999999999999999999999999999999998887654
No 239
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.53 E-value=0.00029 Score=60.33 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLVEP 286 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~~p 286 (479)
+.+..|.|.||+|+|||++++.+......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 45677999999999999999999887554
No 240
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.53 E-value=3.7e-05 Score=70.93 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=34.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhh
Q 011713 386 KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTI 431 (479)
Q Consensus 386 ~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i 431 (479)
.+|.++++||+-. +|+.....+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 3578999999876 78887778888887655567888888887644
No 241
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.49 E-value=4.5e-05 Score=68.30 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=26.9
Q ss_pred eeeEEeeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 011713 252 GITCTFKEGTRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 252 ~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~ 283 (479)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999876
No 242
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.44 E-value=9.2e-05 Score=72.55 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=24.6
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhc
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g 282 (479)
-+++|+.+.|.|++|||||||+.-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987774
No 243
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.37 E-value=5.1e-05 Score=67.94 Aligned_cols=40 Identities=38% Similarity=0.593 Sum_probs=33.7
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE-EECC
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-LIDG 295 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I-~i~g 295 (479)
..++|..+.|+|++||||||+++.|.+.+.+..|.+ .+|+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 345799999999999999999999999988777766 4554
No 244
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.36 E-value=0.00047 Score=68.45 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=31.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCee
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD 297 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~ 297 (479)
.+|..+.|.||+|+||||+++.++.........+.+++..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 4577899999999999999999998876444455555433
No 245
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.36 E-value=0.0001 Score=63.70 Aligned_cols=29 Identities=38% Similarity=0.709 Sum_probs=23.6
Q ss_pred eeeEEeeCCcEEEEEcCCCCcHHHHHHHHh
Q 011713 252 GITCTFKEGTRVGVVGRTGSGKTTLISALF 281 (479)
Q Consensus 252 ~isl~i~~Ge~vaivG~sGsGKSTL~~lL~ 281 (479)
+..+++.+| ..+|+|||||||||++..|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344555554 88999999999999999987
No 246
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.35 E-value=0.00017 Score=62.98 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLVE 285 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~~ 285 (479)
-+++|+|++|+|||||++.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe
Confidence 3799999999999999999998643
No 247
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.35 E-value=8.3e-05 Score=74.60 Aligned_cols=41 Identities=24% Similarity=0.538 Sum_probs=34.8
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhcc-----------CCCCCceEEECCe
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFRL-----------VEPENGRILIDGL 296 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g~-----------~~p~~G~I~i~g~ 296 (479)
.+..|.+++|||++|+|||||++.|.|. .+|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4677899999999999999999999998 7788999888763
No 248
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.30 E-value=5.7e-05 Score=71.39 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=33.9
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeec
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI 298 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i 298 (479)
..+++..+.|+|++||||||+++.|.+.+. .|.+.+||-.+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 456788999999999999999999998875 35677887544
No 249
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.30 E-value=6.3e-05 Score=68.25 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCee
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD 297 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~ 297 (479)
...|+|+|++||||||+++.|.+.+ |...+++-+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~ 51 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDA 51 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCc
Confidence 5689999999999999999999876 556666543
No 250
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.29 E-value=0.00013 Score=64.84 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcc
Q 011713 261 TRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~ 283 (479)
-+++++|++|+|||||++.|++-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999984
No 251
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.29 E-value=0.0013 Score=65.41 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=24.4
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g~ 283 (479)
-+++|+.+.|.|++|+|||||+.-++.-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3789999999999999999999766643
No 252
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.25 E-value=0.0017 Score=66.06 Aligned_cols=36 Identities=31% Similarity=0.357 Sum_probs=29.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID 294 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~ 294 (479)
++..++++|++||||||++.-|+..+....-++.+-
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv 134 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVV 134 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 467899999999999999999998887654566553
No 253
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.25 E-value=0.0001 Score=66.17 Aligned_cols=74 Identities=18% Similarity=0.324 Sum_probs=49.3
Q ss_pred EEEEcCCCCcHHHHHHHHhccC-------------CCCCceEEECCeecCCCCHHHHhccceEEcCCCccccccHHhhcC
Q 011713 263 VGVVGRTGSGKTTLISALFRLV-------------EPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD 329 (479)
Q Consensus 263 vaivG~sGsGKSTL~~lL~g~~-------------~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gTi~eNi~ 329 (479)
|.|+||||||||||++.|+.-+ +|..|++ ||+|..-++.++..+.+ .++-++-.+.+..|.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~~i---~~g~flE~~~~~g~~- 77 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSGNY- 77 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETTEE-
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHHHH---HcCCEEEEEEEcCce-
Confidence 7899999999999999887543 3556764 88888778888776654 355555555555554
Q ss_pred CCCCCCHHHHHHHHH
Q 011713 330 PLGMYSDNEIWEAME 344 (479)
Q Consensus 330 ~~~~~~~~~i~~a~~ 344 (479)
++ .+.+.+.++++
T Consensus 78 YG--t~~~~v~~~l~ 90 (186)
T 1ex7_A 78 YG--STVASVKQVSK 90 (186)
T ss_dssp EE--EEHHHHHHHHH
T ss_pred ee--eecceeeehhh
Confidence 21 23455555443
No 254
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.25 E-value=2.1e-05 Score=78.48 Aligned_cols=57 Identities=32% Similarity=0.338 Sum_probs=36.2
Q ss_pred CccEEEEeEEEEeCCCCCceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEC
Q 011713 230 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID 294 (479)
Q Consensus 230 ~~~I~~~~vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~ 294 (479)
.+.|.|+|++..|.. +.++++++|+| +|||++|+|||||++.|++.-.+..|.+..+
T Consensus 15 ~~~v~~~~l~~~~~~--k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~ 71 (361)
T 2qag_A 15 PGYVGFANLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGA 71 (361)
T ss_dssp ------CCHHHHHHT--HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC---------
T ss_pred CceEEeccchHHhCC--eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCC
Confidence 356889999888853 34789999877 9999999999999999988766555554433
No 255
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.23 E-value=0.00012 Score=65.13 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=30.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEECCee
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLD 297 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~~p~---~G~I~i~g~~ 297 (479)
-..++|+|+||||||||++.|++.+.+. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3679999999999999999999886543 3777777654
No 256
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.22 E-value=0.00017 Score=72.69 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=41.2
Q ss_pred EEEEeCCCCCceeeeeeEEe---eCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEC
Q 011713 238 LKVRYRPNTPLVLKGITCTF---KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID 294 (479)
Q Consensus 238 vsf~Y~~~~~~vL~~isl~i---~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~ 294 (479)
+.+.+.....|++-|+ +.. ..+..++|+|+|||||||+++.|+..+.+..+.|.+-
T Consensus 11 ~~~G~~~~g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 11 IVLGKDRDGGLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp EEEEECTTSCEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEeCCCCeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 3455544344566665 222 2678899999999999999999998877888888774
No 257
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.19 E-value=0.0019 Score=60.63 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+...+.|.||+|+||||+++.+++.+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34568999999999999999998754
No 258
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.19 E-value=0.00018 Score=64.06 Aligned_cols=26 Identities=42% Similarity=0.730 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLVEPE 287 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~~p~ 287 (479)
+++|+|++|+|||||++.+.+...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 69999999999999999999975443
No 259
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.13 E-value=0.00019 Score=71.55 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLVE 285 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~~ 285 (479)
..+..+.|.||+|+||||+++.+.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5677899999999999999999998764
No 260
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.13 E-value=5.9e-06 Score=82.69 Aligned_cols=87 Identities=11% Similarity=0.021 Sum_probs=63.5
Q ss_pred CCChhHHHHHHHHHHhh-cCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHHCC--CcEEEEEccCchhhhcCCE
Q 011713 369 NWSVGQRQLFCLGRVLL-KRNRILILDE---AT------ASIDSATDAILQRIIREEFP--GSTVITIAHRVPTITDSDM 436 (479)
Q Consensus 369 ~LSgGQrQRlaiARAll-~~p~iliLDE---~T------SaLD~~te~~i~~~l~~~~~--~~TvI~IaHrl~~i~~~D~ 436 (479)
.+|+|++||..+++++. .+|++++||| |+ +++|+.....+.+.+.+..+ +.|+|+++|--..-+.+|+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~ 337 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQV 337 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 35677788888998875 5999999999 65 68999999999999977654 7899999986444455777
Q ss_pred EEEEeCCEEEEecChhhhhcc
Q 011713 437 VMVLSYGELVEYDLPSNLMKT 457 (479)
Q Consensus 437 I~vl~~G~Ive~G~~~eLl~~ 457 (479)
+.++++ +.+.|+.+||.++
T Consensus 338 i~~i~~--~l~~~~~~~~~~~ 356 (365)
T 1lw7_A 338 KAVIEK--VLNEEEISELQNT 356 (365)
T ss_dssp HHHHHH--HTSCCCCSSCCC-
T ss_pred HHHHHH--HhcccchhHhhcC
Confidence 777765 6677788887653
No 261
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.12 E-value=0.00091 Score=60.54 Aligned_cols=44 Identities=23% Similarity=0.288 Sum_probs=31.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchh
Q 011713 386 KRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPT 430 (479)
Q Consensus 386 ~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~ 430 (479)
.++.++++||+- .+++.....+.+.+.+...+..+|++|++...
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCChhh
Confidence 368899999974 46777777788888775556667777776643
No 262
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.12 E-value=0.00024 Score=64.42 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 011713 262 RVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g 282 (479)
+|+|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 263
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.09 E-value=0.00026 Score=68.68 Aligned_cols=46 Identities=28% Similarity=0.354 Sum_probs=36.1
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhc----cCCCCCceEEEC
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR----LVEPENGRILID 294 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g----~~~p~~G~I~i~ 294 (479)
..+|+..+.+ .|.-++|+|+||+||||++..|.+ +...+...|...
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~ 182 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREI 182 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEES
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEc
Confidence 3688888888 799999999999999999998887 444444444443
No 264
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.09 E-value=0.00078 Score=65.40 Aligned_cols=28 Identities=36% Similarity=0.287 Sum_probs=25.4
Q ss_pred EEeeCCcEEEEEcCCCCcHHHHHHHHhc
Q 011713 255 CTFKEGTRVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 255 l~i~~Ge~vaivG~sGsGKSTL~~lL~g 282 (479)
--+++|..+.|.||+|+|||||+..++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999998875
No 265
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.06 E-value=0.0005 Score=61.21 Aligned_cols=36 Identities=39% Similarity=0.753 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh-cc----CCCCCc----eEEECCee
Q 011713 262 RVGVVGRTGSGKTTLISALF-RL----VEPENG----RILIDGLD 297 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~-g~----~~p~~G----~I~i~g~~ 297 (479)
+|+|+|++|+|||||++-+. +- +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 68999999999999997554 44 667766 56666643
No 266
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.05 E-value=0.0019 Score=64.06 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
++...+.|.||+|+|||||++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998765
No 267
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.01 E-value=0.0036 Score=60.33 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+..+.|.||+|+||||+++.++..+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999888765
No 268
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.99 E-value=0.0042 Score=60.65 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.+..-+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 456789999999999999999999875
No 269
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.98 E-value=0.0004 Score=61.32 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLVE 285 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~~ 285 (479)
|..|.|+|+|||||||+.+.|..-+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999998764
No 270
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.97 E-value=0.00032 Score=62.42 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998644
No 271
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.96 E-value=0.00012 Score=72.16 Aligned_cols=37 Identities=32% Similarity=0.500 Sum_probs=33.4
Q ss_pred ceeeeeeEEeeCCcE--EEEEcCCCCcHHHHHHHHhccC
Q 011713 248 LVLKGITCTFKEGTR--VGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~--vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.+++++++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 378889999999999 9999999999999999998754
No 272
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.94 E-value=0.00026 Score=70.79 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=43.8
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchhhhcCCEEEE
Q 011713 377 LFCLGRVLLKRNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPTITDSDMVMV 439 (479)
Q Consensus 377 RlaiARAll~~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~i~~~D~I~v 439 (479)
+.+|+++|..+|+++++|||| |+++- ..+++....+.+++.++|..+....+||++.
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~---~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~ 255 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETV---ETALRAAETGHLVFGTLHTNTAIDTIHRIVD 255 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHH---HHHHHHHTTTCEEEECCCCCSHHHHHHHHHH
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHH---HHHHHHHhcCCEEEEEECcchHHHHHHHHHH
Confidence 469999999999999999999 77653 3344455568999999998776555666543
No 273
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.92 E-value=0.00046 Score=61.18 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~ 283 (479)
.=+++++|++|+|||||++.+.+-
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999975
No 274
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.90 E-value=0.00012 Score=66.77 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLVEPE 287 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~~p~ 287 (479)
.|+|+|++||||||+++.|.+.+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999988654
No 275
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.88 E-value=0.0011 Score=61.19 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=33.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccC-----------chhhhcCCEEEEE
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHR-----------VPTITDSDMVMVL 440 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHr-----------l~~i~~~D~I~vl 440 (479)
+++++++||+-- |+.+.-..+ ..+.+ .+.++|++-|+ ...+..||+|.-|
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el 149 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKL 149 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEEC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeec
Confidence 589999999964 665432222 33443 38899999993 2345678998875
No 276
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.84 E-value=0.00061 Score=62.01 Aligned_cols=29 Identities=34% Similarity=0.621 Sum_probs=23.2
Q ss_pred eeeEEeeCCcEEEEEcCCCCcHHHHHHHHh
Q 011713 252 GITCTFKEGTRVGVVGRTGSGKTTLISALF 281 (479)
Q Consensus 252 ~isl~i~~Ge~vaivG~sGsGKSTL~~lL~ 281 (479)
+.++.+.+ ...+|+|||||||||++..|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 34455555 489999999999999999875
No 277
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.84 E-value=0.00054 Score=59.91 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.|+|+|++||||||+++.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998664
No 278
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.83 E-value=0.0008 Score=66.74 Aligned_cols=36 Identities=36% Similarity=0.671 Sum_probs=31.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc-----------cCCCCCceEEECC
Q 011713 260 GTRVGVVGRTGSGKTTLISALFR-----------LVEPENGRILIDG 295 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g-----------~~~p~~G~I~i~g 295 (479)
|-+++|||.+|+|||||++.|.+ -.+|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 4578888888766
No 279
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.81 E-value=0.00089 Score=59.92 Aligned_cols=52 Identities=13% Similarity=0.218 Sum_probs=33.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCch-----------hhhcCCEEEEEeC
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVP-----------TITDSDMVMVLSY 442 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~-----------~i~~~D~I~vl~~ 442 (479)
+++++++||+-- +|++....+..... .+..+|+..++.. .+..||.|.-|+.
T Consensus 76 ~~dvviIDE~Q~-~~~~~~~~l~~l~~---~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPSLFEVVKDLLD---RGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TEEEEEECCGGG-SCTTHHHHHHHHHH---TTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCEEEEECccc-CCHHHHHHHHHHHH---CCCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 578999999854 66544333333322 2778888788443 4556999988754
No 280
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.81 E-value=0.00067 Score=65.28 Aligned_cols=35 Identities=40% Similarity=0.520 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 295 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g 295 (479)
+|..+.|+|+|||||||+++.|+.-++ .|.+.|++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 467899999999999999999987653 36677765
No 281
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.81 E-value=0.00062 Score=60.51 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
++..|.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998654
No 282
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.81 E-value=0.0026 Score=54.20 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLVE 285 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~~ 285 (479)
+.+..+.|.||+|+|||++++.+.....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 4466799999999999999999987643
No 283
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.80 E-value=0.0018 Score=66.33 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=27.8
Q ss_pred eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 011713 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 249 vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~ 283 (479)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 35554435899999999999999999998766543
No 284
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.79 E-value=0.00065 Score=60.45 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLVE 285 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~~ 285 (479)
+|..+.|.|++||||||+++.|...+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999987553
No 285
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.75 E-value=0.00067 Score=63.12 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=27.1
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhcc---CCCCCceE
Q 011713 257 FKEGTRVGVVGRTGSGKTTLISALFRL---VEPENGRI 291 (479)
Q Consensus 257 i~~Ge~vaivG~sGsGKSTL~~lL~g~---~~p~~G~I 291 (479)
-++|.+++|+|++||||||+.+.|.+. ..++.|.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~ 50 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 50 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCe
Confidence 356899999999999999999999863 33444444
No 286
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.75 E-value=0.00076 Score=60.83 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+|..|+|+|++||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999877
No 287
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.73 E-value=0.00071 Score=60.41 Aligned_cols=27 Identities=33% Similarity=0.347 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
++|..|.|+|++||||||+++.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998754
No 288
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.73 E-value=0.0021 Score=61.98 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
...+.+.||+|+|||+|++.+++.+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467888999999999999999876
No 289
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.71 E-value=0.0062 Score=71.36 Aligned_cols=39 Identities=31% Similarity=0.401 Sum_probs=31.1
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE-EECC
Q 011713 257 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-LIDG 295 (479)
Q Consensus 257 i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I-~i~g 295 (479)
+++|+.+.|.||+|+|||||+.-++.......|.+ ++++
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~ 768 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 768 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEec
Confidence 89999999999999999999999887665444443 3344
No 290
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.71 E-value=0.0076 Score=61.05 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=24.7
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.=++...|.|+|++||||||+++.|+.-+
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 34567899999999999999999998644
No 291
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.68 E-value=0.00099 Score=61.00 Aligned_cols=32 Identities=38% Similarity=0.473 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 295 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g 295 (479)
++-.|+|+|++||||||+++.|..+ |...+|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 3568999999999999999999872 5555554
No 292
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.68 E-value=0.00082 Score=58.64 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 011713 262 RVGVVGRTGSGKTTLISAL 280 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL 280 (479)
.|+|+|++||||||+++.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 293
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.67 E-value=0.00056 Score=60.57 Aligned_cols=27 Identities=30% Similarity=0.214 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.++..|.|+|++||||||+++.|...+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998554
No 294
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.62 E-value=0.0054 Score=60.73 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
++..-+.|.||+|+|||||++.++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455679999999999999999999865
No 295
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.61 E-value=0.01 Score=57.94 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLVE 285 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~~ 285 (479)
..+.|.||+|+||||+++.++....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999987653
No 296
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.58 E-value=0.0011 Score=59.40 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.++..|+|+|++||||||+.+.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998655
No 297
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.57 E-value=0.00063 Score=67.77 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+..+.|.||+|+||||+++.+.+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998765
No 298
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.55 E-value=0.0012 Score=59.95 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
++|..|+|.|++||||||+.+.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998654
No 299
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.52 E-value=0.013 Score=59.80 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.+..-+.|.||+|+|||||++.+++..
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 566889999999999999999999876
No 300
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.52 E-value=0.0013 Score=59.57 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLVEP 286 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~~p 286 (479)
+|..|+|.|++||||||+++.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4778999999999999999999987654
No 301
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.51 E-value=0.0011 Score=62.51 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
..++|+|++|||||||.+.|++-+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998764
No 302
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.50 E-value=0.0013 Score=59.71 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=24.4
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 257 FKEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 257 i~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.++|..|+|+|++||||||+++.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999998654
No 303
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.50 E-value=0.00098 Score=58.73 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998765
No 304
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.50 E-value=0.0061 Score=60.25 Aligned_cols=43 Identities=12% Similarity=0.165 Sum_probs=31.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchh
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPT 430 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~ 430 (479)
++.++++||+- .++......+.+.+++...+..+|++|++...
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 57899999964 46777777888888765556677777877653
No 305
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.49 E-value=0.0014 Score=58.79 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|++||++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999754
No 306
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.48 E-value=0.0049 Score=59.64 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=26.0
Q ss_pred eeCCcEEEEEcCCCCcHHHHHH-HHhccCCC--CCceEEECC
Q 011713 257 FKEGTRVGVVGRTGSGKTTLIS-ALFRLVEP--ENGRILIDG 295 (479)
Q Consensus 257 i~~Ge~vaivG~sGsGKSTL~~-lL~g~~~p--~~G~I~i~g 295 (479)
+++| .+-|.||+|||||||+. ++...... ..-.+++|+
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 7889 99999999999999954 44443321 222455555
No 307
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.47 E-value=0.00057 Score=61.35 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=25.3
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
..+++..|+|+|++||||||+.+.|...+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899999999999999999998765
No 308
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.47 E-value=0.0035 Score=54.68 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcc
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~ 283 (479)
++.-+|+++|++|+|||||++.+.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34668999999999999999999863
No 309
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.44 E-value=0.0026 Score=54.95 Aligned_cols=21 Identities=38% Similarity=0.708 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 011713 262 RVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g 282 (479)
+|+++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999987
No 310
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.44 E-value=0.0069 Score=58.69 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+...+.|.||+|+||||+++.+....
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 44679999999999999999998753
No 311
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.42 E-value=0.0015 Score=57.41 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 011713 261 TRVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g 282 (479)
..|.|+|++||||||+++.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999997
No 312
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.42 E-value=0.0064 Score=66.55 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.+.++||+|+|||++++.|....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999876
No 313
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.40 E-value=0.0011 Score=58.28 Aligned_cols=35 Identities=34% Similarity=0.378 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCC---ceEEECC
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLVEPEN---GRILIDG 295 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~~p~~---G~I~i~g 295 (479)
..++|+|+||||||||+..|++.+.... |.|..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 4789999999999999999998765432 4455444
No 314
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.38 E-value=0.0017 Score=57.81 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
++..|+|+|++||||||+.+.|...+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999997654
No 315
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.38 E-value=0.0013 Score=58.17 Aligned_cols=27 Identities=22% Similarity=0.253 Sum_probs=18.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.++..|.|.|++||||||+++.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357889999999999999999998654
No 316
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.35 E-value=0.0051 Score=59.83 Aligned_cols=44 Identities=16% Similarity=0.346 Sum_probs=33.2
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHHHCCCcEEEEEccCchhh
Q 011713 387 RNRILILDEATASID-SATDAILQRIIREEFPGSTVITIAHRVPTI 431 (479)
Q Consensus 387 ~p~iliLDE~TSaLD-~~te~~i~~~l~~~~~~~TvI~IaHrl~~i 431 (479)
+++++++||+-. +. .+....+.+.+++...+..+|++|++...+
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITANNIDGI 149 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGS
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 789999999854 34 556667777787766677888888887643
No 317
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.33 E-value=0.0017 Score=57.67 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLVE 285 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~~ 285 (479)
.|.|.|++||||||+++.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988664
No 318
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.32 E-value=0.0014 Score=65.30 Aligned_cols=22 Identities=50% Similarity=0.715 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+++|||++|+|||||++.|.+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999986
No 319
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.32 E-value=0.0018 Score=60.70 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
=+|+|||++|+|||||++.|+|--
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999999753
No 320
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.31 E-value=0.0018 Score=55.77 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 68999999999999999998754
No 321
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.28 E-value=0.0032 Score=56.72 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=28.5
Q ss_pred eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 011713 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 249 vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~ 283 (479)
.++...+.+ .|..+.|+||||||||||+.-|..-
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 577776665 5889999999999999999988754
No 322
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.27 E-value=0.002 Score=55.58 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 323
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.25 E-value=0.0023 Score=58.56 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
++|-.|.|+|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357789999999999999999998765
No 324
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.24 E-value=0.0021 Score=58.54 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+|+|.|++||||||+++.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997654
No 325
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.24 E-value=0.004 Score=56.19 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 011713 262 RVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g 282 (479)
+|+|+|++|+|||||++.+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999998774
No 326
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.23 E-value=0.002 Score=61.29 Aligned_cols=22 Identities=50% Similarity=0.745 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|++||++|+|||||++.|++-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998764
No 327
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.22 E-value=0.0031 Score=54.37 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+|+++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998654
No 328
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.22 E-value=0.0021 Score=59.30 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=22.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.++..|.|+|++||||||+++.|...+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998655
No 329
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.21 E-value=0.0024 Score=55.45 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+|+++|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999998753
No 330
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.21 E-value=0.0051 Score=54.17 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcc
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~ 283 (479)
++.=+|+++|++|+|||||++.+.+-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999999863
No 331
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.20 E-value=0.0025 Score=60.14 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+|+++|.+|||||||++.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999864
No 332
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.19 E-value=0.0025 Score=55.10 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+|+++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999998643
No 333
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.19 E-value=0.0023 Score=54.88 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 011713 262 RVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g 282 (479)
+|+++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998875
No 334
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.19 E-value=0.0021 Score=58.65 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+|+|+|++||||||+++.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997655
No 335
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.18 E-value=0.027 Score=56.34 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.++..+.|.||+|+|||+|++.++...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356889999999999999999998763
No 336
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.18 E-value=0.0022 Score=60.89 Aligned_cols=24 Identities=42% Similarity=0.580 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLVE 285 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~~ 285 (479)
+|+++|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 799999999999999999998753
No 337
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.17 E-value=0.0028 Score=57.10 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+-.|+|+|++||||||+++.|...+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998754
No 338
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.17 E-value=0.0069 Score=58.43 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=30.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCchh
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVPT 430 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~~ 430 (479)
++.++++||+-. ++......+.+.+.+...+..+|++|++...
T Consensus 107 ~~~viiiDe~~~-l~~~~~~~L~~~le~~~~~~~~il~~~~~~~ 149 (323)
T 1sxj_B 107 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNK 149 (323)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEECccc-CCHHHHHHHHHHHhccCCCceEEEEeCChhh
Confidence 478999999643 4556666777777776556677777877643
No 339
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.0024 Score=56.80 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.=+++++|++|||||||++.+.+-.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999998764
No 340
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.16 E-value=0.0027 Score=55.41 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
-+.++|.|+.||||||+.+.|...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3789999999999999999998643
No 341
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.16 E-value=0.0023 Score=54.77 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 342
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.15 E-value=0.0025 Score=56.90 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLVE 285 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~~ 285 (479)
.|+|.|++||||||+++.|...++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999987663
No 343
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.15 E-value=0.0025 Score=54.50 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998653
No 344
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.14 E-value=0.0027 Score=55.26 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+|+|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 345
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.14 E-value=0.0023 Score=57.64 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
...|+|.|++||||||+.+.|...+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998655
No 346
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.14 E-value=0.0024 Score=57.60 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.++|.|++||||||+.+.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
No 347
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.13 E-value=0.0025 Score=54.70 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999853
No 348
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.13 E-value=0.0033 Score=55.85 Aligned_cols=22 Identities=41% Similarity=0.674 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+|+|++|+|||||++.|.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999873
No 349
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.12 E-value=0.0034 Score=55.86 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcc
Q 011713 261 TRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~ 283 (479)
=+|+++|++|+|||||++.|++-
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999875
No 350
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.12 E-value=0.0022 Score=56.81 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.+|+|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998754
No 351
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.11 E-value=0.0025 Score=55.03 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 352
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.11 E-value=0.0026 Score=54.70 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 011713 262 RVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g 282 (479)
+++++|++|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 353
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.11 E-value=0.0029 Score=55.25 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.|.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 354
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.11 E-value=0.0027 Score=54.89 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999854
No 355
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.10 E-value=0.01 Score=57.75 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.+...+.|.||+|+|||+|++.++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 355679999999999999999998763
No 356
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.10 E-value=0.0024 Score=58.61 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLVE 285 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~~ 285 (479)
.+..|.|+|++||||||+.+.|...+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999987653
No 357
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.10 E-value=0.0028 Score=57.04 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
-.|+|+|.+||||||+.+.|...+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998763
No 358
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.09 E-value=0.0025 Score=55.74 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
..|+|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998754
No 359
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.08 E-value=0.0028 Score=54.64 Aligned_cols=22 Identities=14% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998754
No 360
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.07 E-value=0.0028 Score=55.20 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999753
No 361
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.07 E-value=0.0028 Score=55.33 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999988754
No 362
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.06 E-value=0.0027 Score=56.43 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~ 283 (479)
-=+++++|++|+|||||++.|.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999864
No 363
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.06 E-value=0.0046 Score=54.33 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=27.0
Q ss_pred ceeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhc
Q 011713 248 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 248 ~vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g 282 (479)
..+|...+.+ .|.-+.|.|+||+||||++..|..
T Consensus 5 ~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3566665554 488999999999999999987764
No 364
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.06 E-value=0.0028 Score=55.36 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999865
No 365
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.05 E-value=0.0045 Score=54.62 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 366
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.04 E-value=0.0036 Score=61.24 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=24.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLVE 285 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~~ 285 (479)
+++..+.|+||||||||||...|+.-+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567899999999999999999998763
No 367
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.03 E-value=0.0017 Score=62.48 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=19.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
++-.|+|.|+|||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
No 368
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.03 E-value=0.0029 Score=56.05 Aligned_cols=24 Identities=42% Similarity=0.684 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
-+|+++|++|+|||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 379999999999999999998753
No 369
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.03 E-value=0.0058 Score=54.92 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 011713 262 RVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g 282 (479)
+|+++|++|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999975
No 370
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.01 E-value=0.003 Score=56.13 Aligned_cols=25 Identities=36% Similarity=0.372 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+..|+|+|++||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998654
No 371
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.01 E-value=0.0033 Score=55.95 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.|+|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 372
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.00 E-value=0.0032 Score=54.26 Aligned_cols=21 Identities=19% Similarity=0.553 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 011713 262 RVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g 282 (479)
+|+++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 373
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.00 E-value=0.0033 Score=55.75 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLVEP 286 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~~p 286 (479)
+|+++|++|+|||||++.+.+-+.+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999987643
No 374
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.99 E-value=0.0035 Score=58.57 Aligned_cols=26 Identities=31% Similarity=0.247 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
++-+|+|.|++||||||+++.|..-|
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998655
No 375
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.99 E-value=0.0033 Score=59.85 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
-+|+++|++|||||||++.|.|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 379999999999999999999853
No 376
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.99 E-value=0.0095 Score=61.60 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.5
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 257 FKEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 257 i~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+++...+.|.||+|+|||++++.+....
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4667789999999999999999998754
No 377
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.97 E-value=0.0033 Score=55.32 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.|.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999853
No 378
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.011 Score=60.02 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=26.0
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhccCC
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFRLVE 285 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~ 285 (479)
-++|-.-+.+.||+|+|||+|++.+++-..
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 466777899999999999999999998653
No 379
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.97 E-value=0.0033 Score=58.95 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
-.|+|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999997744
No 380
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.95 E-value=0.0033 Score=55.46 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999999875
No 381
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.93 E-value=0.0036 Score=53.77 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 011713 262 RVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g 282 (479)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999975
No 382
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.92 E-value=0.0035 Score=55.32 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 011713 262 RVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g 282 (479)
+|+|+|++|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999986
No 383
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.92 E-value=0.004 Score=54.24 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 384
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.92 E-value=0.0062 Score=53.29 Aligned_cols=20 Identities=20% Similarity=0.526 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 011713 262 RVGVVGRTGSGKTTLISALF 281 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~ 281 (479)
+|+++|++|+|||||++.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 78999999999999999998
No 385
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.89 E-value=0.0038 Score=53.95 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc
Q 011713 260 GTRVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g 282 (479)
.=+|+++|++|+|||||++.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999975
No 386
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.88 E-value=0.0036 Score=54.46 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 011713 262 RVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g 282 (479)
+|+++|++|+|||||++.+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999984
No 387
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.88 E-value=0.0076 Score=52.82 Aligned_cols=21 Identities=38% Similarity=0.676 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 011713 262 RVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g 282 (479)
+|+++|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999884
No 388
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.86 E-value=0.0039 Score=54.44 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6999999999999999999753
No 389
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.85 E-value=0.0058 Score=54.35 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 011713 261 TRVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g 282 (479)
-+|+|+|++|+|||||++.+.+
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999987
No 390
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.85 E-value=0.0044 Score=58.49 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.++..|.|+|++||||||+++.|...+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999998753
No 391
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.82 E-value=0.0067 Score=53.94 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 011713 261 TRVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g 282 (479)
=+|+++|++|+|||||++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3799999999999999999986
No 392
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.82 E-value=0.0033 Score=55.17 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhc
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g 282 (479)
+.=+|+++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 455899999999999999999874
No 393
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.82 E-value=0.0057 Score=60.94 Aligned_cols=31 Identities=29% Similarity=0.582 Sum_probs=25.9
Q ss_pred eeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHh
Q 011713 250 LKGITCTFKEGTRVGVVGRTGSGKTTLISALF 281 (479)
Q Consensus 250 L~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~ 281 (479)
+++..+++.+ ...+|+|+|||||||++..|.
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 3666777766 589999999999999999875
No 394
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.82 E-value=0.0043 Score=60.03 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+|||++|+|||||++.|+|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999974
No 395
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.81 E-value=0.0042 Score=54.98 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.|.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999854
No 396
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.81 E-value=0.0043 Score=54.23 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 397
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.81 E-value=0.0043 Score=54.01 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 398
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.80 E-value=0.0043 Score=58.32 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcc
Q 011713 261 TRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~ 283 (479)
-+|+|+|++|+|||||++.|++-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999874
No 399
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.79 E-value=0.0043 Score=59.33 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc
Q 011713 260 GTRVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g 282 (479)
.-.|+|+|++||||||+++.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
No 400
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.78 E-value=0.012 Score=65.22 Aligned_cols=35 Identities=31% Similarity=0.273 Sum_probs=26.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCc-eEEECC
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLVEPENG-RILIDG 295 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~~p~~G-~I~i~g 295 (479)
..+.|+||+|+|||++++.|........+ -|.+|.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~ 624 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 624 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEec
Confidence 57899999999999999999988754333 244443
No 401
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.77 E-value=0.0045 Score=54.31 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 011713 262 RVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g 282 (479)
+|+++|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 699999999999999999985
No 402
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.76 E-value=0.0069 Score=54.78 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999865
No 403
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.76 E-value=0.0025 Score=57.62 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=24.1
Q ss_pred eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 011713 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 249 vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~ 283 (479)
...|+.+.-.+--+|+++|++|+|||||++.+.+-
T Consensus 14 ~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 14 GTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp -----CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cccccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 34444444444458999999999999999999863
No 404
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.74 E-value=0.0049 Score=56.36 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+|-.|.|+|+.||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
No 405
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.73 E-value=0.0045 Score=54.41 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998753
No 406
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.71 E-value=0.0049 Score=54.61 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+|+|++|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999854
No 407
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.70 E-value=0.0049 Score=55.08 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+|||++|+|||||++.+.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999863
No 408
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.70 E-value=0.0048 Score=54.93 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999753
No 409
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.69 E-value=0.013 Score=60.60 Aligned_cols=26 Identities=38% Similarity=0.367 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLVE 285 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~~ 285 (479)
...|+|||++||||||++.-|+..+.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999996654
No 410
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.69 E-value=0.0054 Score=54.61 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.|.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 411
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.69 E-value=0.0037 Score=60.54 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=30.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCch
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVP 429 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~ 429 (479)
++.++++||+- .+++.....+.+.+.+...+..+|+++.+..
T Consensus 110 ~~~vliiDe~~-~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 110 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CCeEEEEeCCC-cCCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 68899999974 4566777778888877555566666676654
No 412
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.69 E-value=0.005 Score=55.20 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999864
No 413
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.68 E-value=0.0055 Score=56.31 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcc
Q 011713 261 TRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~ 283 (479)
-+|+++|++|+|||||++.+++-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999874
No 414
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.68 E-value=0.0029 Score=57.66 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.-+|+|+|++|+|||||++.|++--
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998753
No 415
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.67 E-value=0.0027 Score=64.86 Aligned_cols=43 Identities=33% Similarity=0.611 Sum_probs=33.3
Q ss_pred eeeeeeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEE
Q 011713 249 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 292 (479)
Q Consensus 249 vL~~isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~ 292 (479)
+++.+ +.+-+|++++|+|+||+|||||++.|.+-.....|.|.
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 45444 67778999999999999999999999876554444443
No 416
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.67 E-value=0.041 Score=65.39 Aligned_cols=39 Identities=31% Similarity=0.387 Sum_probs=29.8
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCc-eEEECC
Q 011713 257 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RILIDG 295 (479)
Q Consensus 257 i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G-~I~i~g 295 (479)
+++|+.+.|.||+|+|||||+.-++.-.....+ .+++++
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~ 419 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 419 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECT
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 899999999999999999998877755443322 344554
No 417
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.67 E-value=0.0051 Score=55.06 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+|+|++|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999753
No 418
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.66 E-value=0.0053 Score=54.37 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 011713 262 RVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g 282 (479)
+|+++|++|+|||||++.+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999975
No 419
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.66 E-value=0.0084 Score=53.26 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999864
No 420
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.66 E-value=0.0075 Score=55.49 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=17.6
Q ss_pred CCc-EEEEEcCCCCcHHHHHHHHh
Q 011713 259 EGT-RVGVVGRTGSGKTTLISALF 281 (479)
Q Consensus 259 ~Ge-~vaivG~sGsGKSTL~~lL~ 281 (479)
.|+ ++.+.|+.|+||||++--+.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHH
Confidence 455 47889999999999954444
No 421
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.66 E-value=0.0053 Score=55.95 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+++|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998755
No 422
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.65 E-value=0.005 Score=55.21 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcc
Q 011713 261 TRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~ 283 (479)
=+|+++|++|+|||||++.+.+-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 47999999999999999999864
No 423
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.64 E-value=0.0058 Score=54.73 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 424
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.64 E-value=0.0054 Score=54.43 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999863
No 425
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.63 E-value=0.0051 Score=60.31 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLVE 285 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~~ 285 (479)
..|+|+||||||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999998764
No 426
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.63 E-value=0.0063 Score=58.81 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+..++|+||||||||||+.-|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 427
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.62 E-value=0.035 Score=65.15 Aligned_cols=35 Identities=29% Similarity=0.276 Sum_probs=28.1
Q ss_pred eeeeeeEE---eeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 249 VLKGITCT---FKEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 249 vL~~isl~---i~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
-|+.+ +. +++|+.+.|.||+|+|||||+.-++.-.
T Consensus 370 ~LD~l-Lg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~ 407 (1706)
T 3cmw_A 370 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (1706)
T ss_dssp HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHH-hccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45554 33 8999999999999999999987766443
No 428
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.62 E-value=0.0053 Score=54.43 Aligned_cols=24 Identities=38% Similarity=0.362 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
=+|+++|++|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998654
No 429
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.61 E-value=0.0056 Score=58.28 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+|+++|.+|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999854
No 430
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.61 E-value=0.0057 Score=59.33 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcc
Q 011713 261 TRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~ 283 (479)
-+|||+|++|+|||||++.|+|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47999999999999999999975
No 431
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.60 E-value=0.0057 Score=53.61 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 011713 262 RVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g 282 (479)
+|+++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998874
No 432
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.60 E-value=0.0056 Score=55.59 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
-+++++|++|+|||||++.|.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998754
No 433
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.59 E-value=0.0055 Score=54.42 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+|+|+|++|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999998643
No 434
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.57 E-value=0.0065 Score=54.28 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLVEP 286 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~~p 286 (479)
=+|+++|++|+|||||++.+.+-+.+
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 37999999999999999998875443
No 435
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.56 E-value=0.0062 Score=54.63 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999753
No 436
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.55 E-value=0.006 Score=54.13 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 437
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.071 Score=53.89 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=25.0
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
-+++..-+.+.||+|+|||+|++.+++-.
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35666679999999999999999999864
No 438
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.53 E-value=0.0052 Score=56.04 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+-.++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998865
No 439
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.53 E-value=0.00067 Score=74.76 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=38.0
Q ss_pred eeEEeeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCC
Q 011713 253 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS 300 (479)
Q Consensus 253 isl~i~~Ge~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~ 300 (479)
.++.+++|+.+.++||+|+|||||++.+++... .+-+.+++.++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLT 549 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSSTT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhhh
Confidence 467789999999999999999999999999874 4566677766543
No 440
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.52 E-value=0.007 Score=57.27 Aligned_cols=30 Identities=33% Similarity=0.429 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCce
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLVEPENGR 290 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~~p~~G~ 290 (479)
-++++||.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999876554443
No 441
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.52 E-value=0.0066 Score=53.60 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhc
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g 282 (479)
+.=+|+++|++|+|||||++.+.+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999985
No 442
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.51 E-value=0.0067 Score=55.74 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.+.|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998655
No 443
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.51 E-value=0.0068 Score=57.19 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+|+++|.+|||||||++.|.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999843
No 444
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.51 E-value=0.0063 Score=57.65 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+|+++|++|+|||||++.|++--
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999743
No 445
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.50 E-value=0.0065 Score=57.33 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.|++-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6799999999999999999974
No 446
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.50 E-value=0.0058 Score=53.72 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcc
Q 011713 261 TRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~ 283 (479)
=+|+++|++|+|||||++.+.+-
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999863
No 447
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.48 E-value=0.019 Score=58.14 Aligned_cols=29 Identities=24% Similarity=0.239 Sum_probs=25.7
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
-+++..-+-+.||+|+|||+|++.+++..
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 46677889999999999999999999864
No 448
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.48 E-value=0.0067 Score=54.07 Aligned_cols=23 Identities=26% Similarity=0.650 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcc
Q 011713 261 TRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~ 283 (479)
=+|+++|++|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999863
No 449
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.47 E-value=0.0067 Score=53.72 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 011713 262 RVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g 282 (479)
+|+++|++|+|||||++.+.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 450
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.46 E-value=0.0081 Score=55.52 Aligned_cols=26 Identities=31% Similarity=0.472 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.+..|.|+|+.||||||+++.|...+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998765
No 451
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.45 E-value=0.0067 Score=54.62 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~ 283 (479)
.=+|+++|++|+|||||++.+.+-
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 347999999999999999999853
No 452
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.45 E-value=0.0069 Score=54.21 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~ 283 (479)
.=+|+|+|++|+|||||++.+.+-
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 357999999999999999999754
No 453
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.44 E-value=0.0073 Score=54.85 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 011713 262 RVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g 282 (479)
+|+++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 799999999999999999986
No 454
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.44 E-value=0.007 Score=53.56 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999999753
No 455
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.44 E-value=0.0068 Score=58.61 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.|+|||++|||||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 456
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.43 E-value=0.0081 Score=52.48 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~ 283 (479)
-=+++++|++|+|||||++.+.+-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998853
No 457
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.40 E-value=0.0085 Score=54.92 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=26.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLVEP 286 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~~p 286 (479)
++|..|.+-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46999999999999999999999988765
No 458
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.39 E-value=0.0081 Score=54.43 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+|+|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 459
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.38 E-value=0.0076 Score=53.41 Aligned_cols=21 Identities=29% Similarity=0.699 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 011713 262 RVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g 282 (479)
+|+++|++|+|||||++.+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 689999999999999988864
No 460
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.37 E-value=0.0056 Score=53.41 Aligned_cols=22 Identities=41% Similarity=0.741 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 011713 261 TRVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g 282 (479)
=+|+++|++|+|||||++.+.+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999999875
No 461
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.37 E-value=0.02 Score=67.96 Aligned_cols=35 Identities=31% Similarity=0.307 Sum_probs=31.1
Q ss_pred ceeeeee--EEeeCCcEEEEEcCCCCcHHHHHHHHhc
Q 011713 248 LVLKGIT--CTFKEGTRVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 248 ~vL~~is--l~i~~Ge~vaivG~sGsGKSTL~~lL~g 282 (479)
+.|+++. .-+++|+.+.++|++|||||||+..+.-
T Consensus 1067 ~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ 1103 (2050)
T 3cmu_A 1067 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 1103 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4688887 5799999999999999999999998773
No 462
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.37 E-value=0.0083 Score=53.59 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~ 283 (479)
.=+|+++|++|+|||||++.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 347999999999999999998853
No 463
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.36 E-value=0.0086 Score=52.52 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLVE 285 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~~ 285 (479)
..+..+.|+||+|+||||+++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3457899999999999999999987653
No 464
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.36 E-value=0.0079 Score=53.60 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=21.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhc
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g 282 (479)
++.=+|+++|++|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3456799999999999999999874
No 465
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.36 E-value=0.007 Score=57.95 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
=+|+|||++|+|||||++.|.|--
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 369999999999999999999864
No 466
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.34 E-value=0.0072 Score=55.88 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLVE 285 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~~ 285 (479)
.+|..|+|-|++||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999987764
No 467
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.33 E-value=0.0075 Score=58.66 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLVE 285 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~~ 285 (479)
..+.|+||||||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998764
No 468
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.33 E-value=0.0022 Score=65.63 Aligned_cols=124 Identities=23% Similarity=0.305 Sum_probs=66.2
Q ss_pred eeeeEEeeCCc--EEEEEcCCCCcHHHHHHHHhccCCCCCceEEECCeecCCCCHHHHhccceEEcCCCcccccc--HHh
Q 011713 251 KGITCTFKEGT--RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGS--VRT 326 (479)
Q Consensus 251 ~~isl~i~~Ge--~vaivG~sGsGKSTL~~lL~g~~~p~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q~~~lF~gT--i~e 326 (479)
+.+.-.++.|+ .+.|.||+|+||||+++.|.+.....-..+. . .....+++|..+....+.+..-..+ +-|
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~--a---~~~~~~~ir~~~~~a~~~~~~~~~~iLfID 113 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERIS--A---VTSGVKEIREAIERARQNRNAGRRTILFVD 113 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE--T---TTCCHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE--e---ccCCHHHHHHHHHHHHHhhhcCCCcEEEEe
Confidence 33444455555 4999999999999999999999866543332 2 2334555555443322211100111 123
Q ss_pred hcCCCCCCCHHHHHHHHHHccHHHHHHhCCccccccccCCCCCCChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 011713 327 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILILDEAT 397 (479)
Q Consensus 327 Ni~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSgGQrQRlaiARAll~~p~iliLDE~T 397 (479)
++... +.+. +..+...++ +|--+.|+....+.+ ..+-.+|+++..++.|+.++
T Consensus 114 EI~~l---~~~~------q~~LL~~le---~~~v~lI~att~n~~------~~l~~aL~sR~~v~~l~~l~ 166 (447)
T 3pvs_A 114 EVHRF---NKSQ------QDAFLPHIE---DGTITFIGATTENPS------FELNSALLSRARVYLLKSLS 166 (447)
T ss_dssp TTTCC---------------CCHHHHH---TTSCEEEEEESSCGG------GSSCHHHHTTEEEEECCCCC
T ss_pred Chhhh---CHHH------HHHHHHHHh---cCceEEEecCCCCcc------cccCHHHhCceeEEeeCCcC
Confidence 33211 1111 112333333 355566665444444 24557888888888887775
No 469
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.33 E-value=0.0075 Score=54.07 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999863
No 470
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.33 E-value=0.0055 Score=53.76 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=9.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
No 471
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.32 E-value=0.0089 Score=54.53 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcc
Q 011713 261 TRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~ 283 (479)
=+|+|||++|+|||||++.+.+.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999999864
No 472
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.32 E-value=0.0076 Score=54.83 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
-+++|+|++|||||||++-|++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999988754
No 473
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.29 E-value=0.0095 Score=54.49 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=25.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLVEP 286 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~~p 286 (479)
.+|..|+|-|++||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999877654
No 474
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.29 E-value=0.005 Score=55.90 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+|+|++|+|||||++.|++-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998853
No 475
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.26 E-value=0.0071 Score=57.02 Aligned_cols=28 Identities=25% Similarity=0.479 Sum_probs=24.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLVE 285 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~~ 285 (479)
+++..|+|.|..||||||+++.|...+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999998763
No 476
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.22 E-value=0.012 Score=53.26 Aligned_cols=23 Identities=39% Similarity=0.345 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcc
Q 011713 261 TRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~ 283 (479)
-+|+++|++|+|||||++.+.+-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999864
No 477
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.21 E-value=0.01 Score=55.17 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLVEP 286 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~~p 286 (479)
+|..|+|.|++||||||+++.|...+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999999877653
No 478
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.20 E-value=0.0095 Score=57.45 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLVE 285 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~~ 285 (479)
...+.|+||||||||||+.-|+.-+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45789999999999999999987753
No 479
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.19 E-value=0.013 Score=53.33 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcc
Q 011713 261 TRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~ 283 (479)
=+|+++|++|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999998753
No 480
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.17 E-value=0.0093 Score=52.93 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999854
No 481
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.17 E-value=0.0076 Score=53.27 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhc
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g 282 (479)
+.=+|+++|++|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 345799999999999999999864
No 482
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.17 E-value=0.0095 Score=55.31 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLVE 285 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~~ 285 (479)
+|..|+|.|..||||||+++.|...+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999998764
No 483
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.16 E-value=0.01 Score=57.45 Aligned_cols=26 Identities=35% Similarity=0.648 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
++-+|+++|++|+|||||++.+.+-+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45689999999999999999987653
No 484
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.15 E-value=0.0099 Score=53.51 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc
Q 011713 260 GTRVGVVGRTGSGKTTLISALFR 282 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g 282 (479)
.=+|+++|++|+|||||++.+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 45799999999999999987763
No 485
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.15 E-value=0.011 Score=54.41 Aligned_cols=28 Identities=29% Similarity=0.269 Sum_probs=24.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLVE 285 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~~ 285 (479)
.+|..|++.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987664
No 486
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.14 E-value=0.01 Score=57.13 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 011713 262 RVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
.+.+.||+|+||||+++.+.+.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 49999999999999999998765
No 487
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.13 E-value=0.011 Score=53.93 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLVE 285 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~~ 285 (479)
+|..|.+-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987765
No 488
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.12 E-value=0.029 Score=56.17 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=24.3
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhccCC
Q 011713 257 FKEGTRVGVVGRTGSGKTTLISALFRLVE 285 (479)
Q Consensus 257 i~~Ge~vaivG~sGsGKSTL~~lL~g~~~ 285 (479)
+++..-+-+.||+|+|||+|++.+++...
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 45555699999999999999999998643
No 489
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.12 E-value=0.01 Score=56.96 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcc
Q 011713 261 TRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~ 283 (479)
..|.|+|++||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999863
No 490
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.12 E-value=0.0071 Score=55.50 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=25.2
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
+.++...|.|+||.||||+|.++.|+.-|
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44667889999999999999999999766
No 491
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.08 E-value=0.093 Score=51.21 Aligned_cols=42 Identities=10% Similarity=0.142 Sum_probs=30.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEEccCch
Q 011713 387 RNRILILDEATASIDSATDAILQRIIREEFPGSTVITIAHRVP 429 (479)
Q Consensus 387 ~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~IaHrl~ 429 (479)
+.+|+|+||+= .|.......+.+.+++-..+...|++|++.+
T Consensus 108 ~~kvviIdead-~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 108 GAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CcEEEEECchh-hcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 57899999974 3555666677777766444566778888875
No 492
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.00 E-value=0.047 Score=56.05 Aligned_cols=77 Identities=17% Similarity=0.167 Sum_probs=56.0
Q ss_pred ccccCCCCCCChhHHHHHH--HHHHhhc---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Q 011713 361 SSVSDEGENWSVGQRQLFC--LGRVLLK---------------RNRILILDEATASIDSATDAILQRIIREEFPGSTVIT 423 (479)
Q Consensus 361 T~vge~G~~LSgGQrQRla--iARAll~---------------~p~iliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ 423 (479)
+........+||||+|-.- ||-|++. .-.+++|||| |-+|.+.-+..++.++++ |--+|+
T Consensus 371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQlii 447 (483)
T 3euj_A 371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLI 447 (483)
T ss_dssp EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEE
Confidence 4445455678999999432 2223222 1147999999 999999999999999875 677788
Q ss_pred EccCchhhhcCCEEEEEe
Q 011713 424 IAHRVPTITDSDMVMVLS 441 (479)
Q Consensus 424 IaHrl~~i~~~D~I~vl~ 441 (479)
+|=. .....+|.++.+-
T Consensus 448 atP~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 448 AAPE-NISPERGTTYKLV 464 (483)
T ss_dssp EESS-SCCCSSSEEEECC
T ss_pred ECcc-hhhhccCceEEEE
Confidence 8766 4556789998875
No 493
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.99 E-value=0.011 Score=54.02 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 011713 261 TRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 261 e~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
-+++|+|.+|+|||||++-+++-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999888653
No 494
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.98 E-value=0.011 Score=53.01 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+|+|++|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 6899999999999999998753
No 495
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.96 E-value=0.1 Score=52.97 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=26.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCCC-CceEEE
Q 011713 259 EGTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILI 293 (479)
Q Consensus 259 ~Ge~vaivG~sGsGKSTL~~lL~g~~~p~-~G~I~i 293 (479)
+...++++|++|+||||++.-|+..+.-. .=+|.+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVll 134 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLV 134 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 45789999999999999999998776543 224554
No 496
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.90 E-value=0.033 Score=56.63 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=25.6
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 011713 256 TFKEGTRVGVVGRTGSGKTTLISALFRLV 284 (479)
Q Consensus 256 ~i~~Ge~vaivG~sGsGKSTL~~lL~g~~ 284 (479)
-+++-.-+.+.||+|+|||+|++.+++..
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 46677889999999999999999999864
No 497
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.89 E-value=0.012 Score=60.47 Aligned_cols=26 Identities=35% Similarity=0.649 Sum_probs=22.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcc
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+.|=+|+|+|++|+|||||++.|++-
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 35667999999999999999999874
No 498
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.89 E-value=0.01 Score=51.85 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 011713 258 KEGTRVGVVGRTGSGKTTLISALFRLVEP 286 (479)
Q Consensus 258 ~~Ge~vaivG~sGsGKSTL~~lL~g~~~p 286 (479)
+.+..+.|+||+|+||||+++.+...+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 44677899999999999999999877643
No 499
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.87 E-value=0.016 Score=55.33 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCC
Q 011713 260 GTRVGVVGRTGSGKTTLISALFRLVEPE 287 (479)
Q Consensus 260 Ge~vaivG~sGsGKSTL~~lL~g~~~p~ 287 (479)
+-++++||.+|+|||||+|.|.|-....
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~ 147 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAK 147 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred CceEEEEecCCCchHHHHHHHhcCceee
Confidence 3478999999999999999999865433
No 500
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.87 E-value=0.013 Score=53.50 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 011713 262 RVGVVGRTGSGKTTLISALFRL 283 (479)
Q Consensus 262 ~vaivG~sGsGKSTL~~lL~g~ 283 (479)
+|+|+|++|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
Done!