Query 011714
Match_columns 479
No_of_seqs 683 out of 2633
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 04:25:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3.5E-63 7.6E-68 494.5 54.2 419 51-478 371-792 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 6E-63 1.3E-67 492.8 52.6 414 56-478 411-850 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 8E-57 1.7E-61 446.6 46.0 397 60-476 97-495 (697)
4 PLN03081 pentatricopeptide (PP 100.0 3.2E-56 7E-61 442.3 45.6 407 48-475 120-563 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 1.4E-55 3.1E-60 447.9 43.7 394 62-476 234-658 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 2.3E-55 4.9E-60 446.5 43.0 415 46-478 182-628 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 7.1E-26 1.5E-30 235.7 53.2 386 64-467 513-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.4E-25 7.3E-30 230.6 54.0 390 64-471 479-868 (899)
9 PRK11447 cellulose synthase su 99.9 3E-20 6.5E-25 194.4 52.2 398 59-474 278-746 (1157)
10 PRK11788 tetratricopeptide rep 99.9 8.7E-22 1.9E-26 184.1 34.6 304 91-406 41-354 (389)
11 PRK11788 tetratricopeptide rep 99.9 1.7E-21 3.7E-26 182.1 35.6 303 130-475 45-353 (389)
12 KOG4626 O-linked N-acetylgluco 99.9 5.3E-21 1.2E-25 171.4 35.3 370 85-475 116-489 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 1.1E-19 2.3E-24 178.8 48.3 369 88-469 130-571 (615)
14 PRK15174 Vi polysaccharide exp 99.9 6.5E-19 1.4E-23 172.7 46.1 330 56-399 48-381 (656)
15 PRK11447 cellulose synthase su 99.9 1.5E-18 3.2E-23 181.8 50.5 368 90-470 274-701 (1157)
16 PRK15174 Vi polysaccharide exp 99.9 4.2E-19 9.2E-24 174.0 43.3 336 85-435 42-382 (656)
17 KOG4626 O-linked N-acetylgluco 99.9 6.7E-20 1.4E-24 164.5 33.3 403 56-477 121-534 (966)
18 PRK10049 pgaA outer membrane p 99.9 4.9E-18 1.1E-22 170.2 49.9 403 51-469 15-456 (765)
19 TIGR00990 3a0801s09 mitochondr 99.9 3.9E-18 8.6E-23 167.8 46.6 364 59-435 136-572 (615)
20 PRK14574 hmsH outer membrane p 99.9 3.1E-17 6.7E-22 161.4 49.6 405 52-469 36-513 (822)
21 PRK10049 pgaA outer membrane p 99.9 1.7E-17 3.8E-22 166.2 42.9 377 82-475 12-426 (765)
22 KOG4422 Uncharacterized conser 99.8 7.2E-16 1.6E-20 133.0 41.2 408 53-471 118-592 (625)
23 PRK09782 bacteriophage N4 rece 99.8 7.4E-15 1.6E-19 147.8 49.9 83 61-149 55-137 (987)
24 PRK14574 hmsH outer membrane p 99.8 1.9E-14 4.2E-19 141.9 46.7 371 89-475 38-483 (822)
25 KOG4422 Uncharacterized conser 99.8 7.8E-15 1.7E-19 126.7 36.9 349 82-436 204-592 (625)
26 KOG2002 TPR-containing nuclear 99.8 3.6E-14 7.8E-19 134.6 37.2 418 46-470 264-746 (1018)
27 PRK09782 bacteriophage N4 rece 99.8 2.3E-13 5E-18 137.2 45.5 355 98-470 355-741 (987)
28 KOG2002 TPR-containing nuclear 99.7 1.2E-13 2.6E-18 131.2 37.8 393 66-471 252-711 (1018)
29 KOG2076 RNA polymerase III tra 99.7 3.7E-13 7.9E-18 127.0 40.8 372 86-468 140-554 (895)
30 KOG2076 RNA polymerase III tra 99.7 2E-13 4.4E-18 128.7 35.6 330 128-467 147-510 (895)
31 KOG2003 TPR repeat-containing 99.7 1E-13 2.2E-18 120.9 29.3 376 62-454 249-708 (840)
32 PRK10747 putative protoheme IX 99.7 3.3E-13 7.3E-18 125.1 35.1 284 168-469 97-390 (398)
33 TIGR00540 hemY_coli hemY prote 99.7 3.1E-13 6.6E-18 126.1 34.7 292 168-469 97-399 (409)
34 PRK10747 putative protoheme IX 99.7 4.5E-13 9.7E-18 124.3 34.6 284 133-434 97-390 (398)
35 TIGR00540 hemY_coli hemY prote 99.7 4.6E-13 9.9E-18 124.9 34.5 291 132-433 96-398 (409)
36 PF13429 TPR_15: Tetratricopep 99.7 6.1E-16 1.3E-20 137.1 13.1 224 232-467 51-275 (280)
37 KOG1915 Cell cycle control pro 99.7 1.5E-11 3.2E-16 108.2 38.6 396 62-469 85-536 (677)
38 COG2956 Predicted N-acetylgluc 99.7 3.9E-12 8.4E-17 106.4 32.5 236 51-289 36-278 (389)
39 COG3071 HemY Uncharacterized e 99.6 5.6E-12 1.2E-16 108.7 33.3 293 168-475 97-396 (400)
40 PF13429 TPR_15: Tetratricopep 99.6 1.8E-15 3.9E-20 134.0 12.6 254 62-322 20-275 (280)
41 KOG0495 HAT repeat protein [RN 99.6 2.2E-10 4.9E-15 104.8 44.2 388 63-469 389-782 (913)
42 KOG0547 Translocase of outer m 99.6 1.3E-11 2.9E-16 108.9 35.0 222 235-468 336-565 (606)
43 KOG0495 HAT repeat protein [RN 99.6 7.8E-11 1.7E-15 107.7 39.7 380 75-468 469-879 (913)
44 KOG2003 TPR repeat-containing 99.6 2.1E-13 4.6E-18 118.9 22.4 373 84-469 200-689 (840)
45 COG3071 HemY Uncharacterized e 99.6 1.1E-11 2.4E-16 106.9 32.5 292 133-439 97-395 (400)
46 COG2956 Predicted N-acetylgluc 99.6 9.1E-12 2E-16 104.2 30.7 289 98-401 48-349 (389)
47 KOG1126 DNA-binding cell divis 99.6 1.3E-12 2.8E-17 119.6 26.3 286 101-402 335-623 (638)
48 KOG1155 Anaphase-promoting com 99.6 3.7E-11 8E-16 105.4 33.0 331 115-468 159-494 (559)
49 KOG1155 Anaphase-promoting com 99.6 1.6E-10 3.5E-15 101.5 35.7 362 82-467 161-534 (559)
50 KOG1126 DNA-binding cell divis 99.6 4.1E-12 8.9E-17 116.4 25.2 289 134-439 333-625 (638)
51 KOG1915 Cell cycle control pro 99.5 1.1E-09 2.4E-14 96.6 36.9 376 83-470 71-501 (677)
52 KOG1173 Anaphase-promoting com 99.5 1.6E-09 3.6E-14 97.7 35.9 273 189-475 243-522 (611)
53 KOG3785 Uncharacterized conser 99.5 1.2E-09 2.7E-14 92.8 32.6 391 58-472 30-493 (557)
54 PRK12370 invasion protein regu 99.5 5.6E-11 1.2E-15 115.3 28.5 270 82-366 253-537 (553)
55 TIGR02521 type_IV_pilW type IV 99.5 8E-11 1.7E-15 101.7 26.7 200 84-287 30-230 (234)
56 KOG0547 Translocase of outer m 99.5 1.5E-09 3.3E-14 96.1 33.7 359 61-434 126-566 (606)
57 PRK12370 invasion protein regu 99.5 2.1E-10 4.6E-15 111.2 31.7 267 117-399 253-535 (553)
58 TIGR02521 type_IV_pilW type IV 99.5 1.5E-10 3.2E-15 100.0 26.5 201 119-323 30-231 (234)
59 KOG1129 TPR repeat-containing 99.4 3.7E-11 8.1E-16 100.7 19.8 236 224-470 222-459 (478)
60 KOG4162 Predicted calmodulin-b 99.4 1.5E-08 3.2E-13 95.0 38.0 389 74-470 312-784 (799)
61 KOG1129 TPR repeat-containing 99.4 3.8E-11 8.3E-16 100.7 18.5 228 89-322 227-456 (478)
62 KOG4318 Bicoid mRNA stability 99.4 1.8E-10 3.9E-15 108.9 24.3 251 71-341 11-282 (1088)
63 KOG4318 Bicoid mRNA stability 99.4 4.8E-11 1E-15 112.7 20.2 278 141-458 11-289 (1088)
64 KOG1156 N-terminal acetyltrans 99.4 3.1E-08 6.7E-13 91.1 37.1 393 62-471 53-470 (700)
65 KOG1840 Kinesin light chain [C 99.3 8.8E-10 1.9E-14 102.1 24.8 238 225-467 199-477 (508)
66 KOG1156 N-terminal acetyltrans 99.3 1.3E-07 2.8E-12 87.2 38.0 402 52-470 9-435 (700)
67 PF12569 NARP1: NMDA receptor- 99.3 7.4E-09 1.6E-13 97.3 31.1 293 163-469 12-334 (517)
68 PF12569 NARP1: NMDA receptor- 99.3 1.5E-08 3.3E-13 95.2 32.8 290 94-397 13-332 (517)
69 KOG1173 Anaphase-promoting com 99.3 3.7E-08 8.1E-13 89.2 32.5 284 152-450 241-532 (611)
70 PF13041 PPR_2: PPR repeat fam 99.3 8.9E-12 1.9E-16 77.5 6.5 49 83-131 1-49 (50)
71 PF13041 PPR_2: PPR repeat fam 99.3 9.7E-12 2.1E-16 77.3 6.5 47 154-200 2-48 (50)
72 KOG2047 mRNA splicing factor [ 99.3 4.2E-07 9.1E-12 83.8 38.0 228 238-468 360-614 (835)
73 KOG2047 mRNA splicing factor [ 99.3 4.6E-07 1E-11 83.5 37.9 398 62-474 114-583 (835)
74 KOG3785 Uncharacterized conser 99.3 2.3E-07 4.9E-12 79.4 33.5 366 51-444 56-498 (557)
75 KOG0548 Molecular co-chaperone 99.3 3.2E-08 6.9E-13 89.2 29.7 389 58-470 10-456 (539)
76 KOG1174 Anaphase-promoting com 99.3 3.4E-07 7.5E-12 79.9 34.6 299 157-470 196-501 (564)
77 KOG1174 Anaphase-promoting com 99.3 5.8E-08 1.3E-12 84.6 29.5 314 118-444 192-509 (564)
78 PRK11189 lipoprotein NlpI; Pro 99.3 1.4E-08 3E-13 90.3 26.9 218 64-290 40-266 (296)
79 KOG1840 Kinesin light chain [C 99.3 5.6E-09 1.2E-13 96.9 24.7 237 86-322 200-477 (508)
80 COG3063 PilF Tfp pilus assembl 99.2 3.3E-08 7.1E-13 79.5 24.4 194 125-322 40-234 (250)
81 PRK11189 lipoprotein NlpI; Pro 99.2 3.3E-08 7.2E-13 87.9 27.3 219 98-325 39-266 (296)
82 cd05804 StaR_like StaR_like; a 99.2 5.8E-07 1.3E-11 83.1 34.8 202 229-434 118-336 (355)
83 COG3063 PilF Tfp pilus assembl 99.2 5.5E-08 1.2E-12 78.2 23.4 198 88-289 38-236 (250)
84 KOG2376 Signal recognition par 99.1 5.8E-06 1.3E-10 75.8 39.2 127 52-185 14-140 (652)
85 cd05804 StaR_like StaR_like; a 99.1 1.1E-06 2.4E-11 81.2 34.0 305 87-399 8-336 (355)
86 KOG4162 Predicted calmodulin-b 99.1 3.7E-06 7.9E-11 79.5 35.4 364 62-435 335-784 (799)
87 PRK04841 transcriptional regul 99.1 1.6E-06 3.4E-11 90.8 37.3 337 129-470 383-761 (903)
88 KOG4340 Uncharacterized conser 99.0 2.5E-06 5.5E-11 71.4 28.2 389 59-469 19-443 (459)
89 KOG0548 Molecular co-chaperone 99.0 6.2E-06 1.3E-10 74.8 32.2 372 57-451 43-471 (539)
90 KOG0624 dsRNA-activated protei 99.0 9.8E-06 2.1E-10 69.4 33.7 301 83-398 36-369 (504)
91 KOG4340 Uncharacterized conser 99.0 6.1E-07 1.3E-11 75.0 23.8 326 87-431 12-372 (459)
92 KOG0985 Vesicle coat protein c 99.0 1.2E-05 2.6E-10 78.3 35.3 337 69-467 966-1306(1666)
93 KOG1125 TPR repeat-containing 99.0 1.6E-07 3.5E-12 85.5 21.9 225 54-286 289-524 (579)
94 KOG0624 dsRNA-activated protei 99.0 7.6E-06 1.6E-10 70.0 29.4 305 119-435 37-371 (504)
95 PF04733 Coatomer_E: Coatomer 99.0 4.8E-08 1E-12 85.6 17.2 250 59-324 10-265 (290)
96 KOG2376 Signal recognition par 99.0 3E-05 6.6E-10 71.3 35.1 127 87-220 14-140 (652)
97 PRK04841 transcriptional regul 99.0 7.6E-06 1.6E-10 85.7 36.2 337 94-435 383-761 (903)
98 PF04733 Coatomer_E: Coatomer 99.0 2.4E-08 5.2E-13 87.5 14.7 253 166-435 12-266 (290)
99 KOG1125 TPR repeat-containing 98.9 4.9E-07 1.1E-11 82.5 21.9 231 234-469 294-527 (579)
100 PLN02789 farnesyltranstransfer 98.9 3.7E-06 7.9E-11 74.8 27.1 204 98-307 50-267 (320)
101 PLN02789 farnesyltranstransfer 98.8 1.3E-05 2.9E-10 71.3 26.8 205 63-273 50-268 (320)
102 KOG1914 mRNA cleavage and poly 98.8 0.0001 2.2E-09 67.2 37.8 383 84-474 19-469 (656)
103 KOG1128 Uncharacterized conser 98.8 3.1E-06 6.8E-11 79.5 23.0 235 86-341 399-634 (777)
104 KOG1070 rRNA processing protei 98.8 1.1E-05 2.3E-10 81.2 27.1 233 187-428 1455-1694(1710)
105 KOG1128 Uncharacterized conser 98.8 1.4E-06 3E-11 81.7 20.0 221 222-469 395-616 (777)
106 COG5010 TadD Flp pilus assembl 98.8 4.4E-06 9.6E-11 69.0 20.2 154 91-248 72-225 (257)
107 KOG0985 Vesicle coat protein c 98.7 0.0002 4.4E-09 70.2 33.7 219 66-321 1000-1220(1666)
108 KOG3617 WD40 and TPR repeat-co 98.7 3.8E-05 8.3E-10 73.4 27.9 329 84-468 725-1108(1416)
109 TIGR03302 OM_YfiO outer membra 98.7 4E-06 8.7E-11 72.3 20.5 184 84-289 32-232 (235)
110 KOG3617 WD40 and TPR repeat-co 98.7 0.00011 2.4E-09 70.3 30.6 225 63-321 741-993 (1416)
111 KOG1070 rRNA processing protei 98.7 1.9E-05 4.2E-10 79.5 26.3 204 120-328 1458-1667(1710)
112 COG5010 TadD Flp pilus assembl 98.7 9E-06 2E-10 67.2 20.3 159 124-286 70-228 (257)
113 KOG1127 TPR repeat-containing 98.7 5.4E-05 1.2E-09 73.9 28.3 389 66-465 474-909 (1238)
114 PRK14720 transcript cleavage f 98.7 1.1E-05 2.4E-10 80.1 24.6 150 152-324 28-178 (906)
115 KOG2053 Mitochondrial inherita 98.7 0.00041 8.9E-09 67.3 41.5 234 51-291 10-257 (932)
116 PF12854 PPR_1: PPR repeat 98.7 3.6E-08 7.8E-13 54.8 4.1 29 152-180 4-32 (34)
117 KOG3081 Vesicle coat complex C 98.7 5.6E-05 1.2E-09 62.7 23.8 120 197-326 115-238 (299)
118 PRK10370 formate-dependent nit 98.7 1E-05 2.3E-10 66.9 20.2 119 168-289 52-173 (198)
119 PRK10370 formate-dependent nit 98.7 1.7E-06 3.7E-11 71.6 15.3 120 348-470 52-174 (198)
120 TIGR03302 OM_YfiO outer membra 98.6 1.1E-05 2.3E-10 69.7 20.9 187 118-324 31-232 (235)
121 PRK14720 transcript cleavage f 98.6 2.5E-05 5.4E-10 77.7 25.0 240 117-416 28-268 (906)
122 PF12854 PPR_1: PPR repeat 98.6 4.9E-08 1.1E-12 54.3 3.8 32 115-146 2-33 (34)
123 KOG3081 Vesicle coat complex C 98.6 4.2E-05 9.1E-10 63.4 21.3 251 167-435 20-272 (299)
124 PRK15359 type III secretion sy 98.6 2.3E-06 4.9E-11 67.0 13.9 109 356-470 14-122 (144)
125 PRK15359 type III secretion sy 98.6 4.5E-06 9.7E-11 65.3 15.0 95 88-184 27-121 (144)
126 PRK15179 Vi polysaccharide bio 98.6 6.9E-05 1.5E-09 73.8 25.8 183 116-308 82-268 (694)
127 KOG1127 TPR repeat-containing 98.5 9.5E-05 2.1E-09 72.3 25.3 394 65-467 507-994 (1238)
128 KOG3616 Selective LIM binding 98.5 0.00018 3.8E-09 68.2 26.1 107 269-393 741-847 (1636)
129 KOG3616 Selective LIM binding 98.5 0.00032 7E-09 66.5 27.6 108 163-283 740-847 (1636)
130 KOG3060 Uncharacterized conser 98.5 0.00025 5.4E-09 58.5 22.8 188 98-289 25-220 (289)
131 KOG1914 mRNA cleavage and poly 98.5 0.001 2.3E-08 61.0 38.0 373 52-434 21-501 (656)
132 PRK15179 Vi polysaccharide bio 98.5 5.4E-05 1.2E-09 74.6 22.5 184 81-274 82-269 (694)
133 KOG3060 Uncharacterized conser 98.5 0.00013 2.8E-09 60.1 20.6 188 238-435 25-221 (289)
134 COG4783 Putative Zn-dependent 98.4 0.00021 4.7E-09 64.6 23.2 111 132-246 318-429 (484)
135 TIGR02552 LcrH_SycD type III s 98.4 2.1E-05 4.5E-10 61.2 14.8 98 85-184 17-114 (135)
136 TIGR02552 LcrH_SycD type III s 98.4 2.7E-05 5.8E-10 60.5 14.8 98 120-219 17-114 (135)
137 PF09976 TPR_21: Tetratricopep 98.4 2.7E-05 5.9E-10 61.2 14.6 119 347-467 23-145 (145)
138 COG4783 Putative Zn-dependent 98.3 9.5E-05 2.1E-09 66.8 18.9 112 348-463 319-431 (484)
139 KOG2053 Mitochondrial inherita 98.3 0.0039 8.4E-08 60.9 40.8 201 51-255 44-256 (932)
140 PF09976 TPR_21: Tetratricopep 98.3 0.0001 2.2E-09 57.9 15.7 115 98-215 24-143 (145)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 6E-05 1.3E-09 68.6 15.6 115 347-467 181-295 (395)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 0.00012 2.5E-09 66.8 15.8 127 121-253 170-296 (395)
143 PF13812 PPR_3: Pentatricopept 98.1 5.2E-06 1.1E-10 46.5 4.3 33 86-118 2-34 (34)
144 TIGR00756 PPR pentatricopeptid 98.1 6.2E-06 1.3E-10 46.6 4.4 33 87-119 2-34 (35)
145 PF13812 PPR_3: Pentatricopept 98.0 9E-06 2E-10 45.5 4.1 31 157-187 3-33 (34)
146 TIGR00756 PPR pentatricopeptid 98.0 1.1E-05 2.5E-10 45.4 4.5 33 442-474 2-34 (35)
147 PF12895 Apc3: Anaphase-promot 98.0 1.1E-05 2.5E-10 56.5 5.3 82 383-466 2-84 (84)
148 KOG2041 WD40 repeat protein [G 98.0 0.016 3.6E-07 55.1 27.2 226 55-321 668-904 (1189)
149 cd00189 TPR Tetratricopeptide 98.0 0.00013 2.7E-09 52.4 10.5 96 373-470 3-98 (100)
150 PF10037 MRP-S27: Mitochondria 98.0 0.00015 3.3E-09 66.3 12.8 120 118-237 64-185 (429)
151 PF10037 MRP-S27: Mitochondria 98.0 0.00016 3.5E-09 66.2 12.8 125 149-273 60-186 (429)
152 PRK15363 pathogenicity island 98.0 0.0002 4.4E-09 55.3 11.3 86 347-434 47-132 (157)
153 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00048 1E-08 52.0 13.7 98 87-184 4-105 (119)
154 KOG0553 TPR repeat-containing 97.9 5.1E-05 1.1E-09 64.2 8.3 124 347-475 93-221 (304)
155 cd00189 TPR Tetratricopeptide 97.9 0.00029 6.4E-09 50.4 11.5 92 89-182 4-95 (100)
156 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00047 1E-08 52.0 12.3 98 373-470 5-106 (119)
157 PF08579 RPM2: Mitochondrial r 97.8 0.00035 7.5E-09 50.0 9.9 37 130-166 35-72 (120)
158 KOG0553 TPR repeat-containing 97.8 0.0003 6.5E-09 59.7 11.3 102 303-414 89-191 (304)
159 PRK10866 outer membrane biogen 97.8 0.011 2.5E-07 50.7 20.9 58 91-149 38-98 (243)
160 PLN03088 SGT1, suppressor of 97.8 0.0008 1.7E-08 61.6 14.7 91 92-184 9-99 (356)
161 PF08579 RPM2: Mitochondrial r 97.8 0.00046 9.9E-09 49.4 10.0 72 95-166 35-115 (120)
162 PLN03088 SGT1, suppressor of 97.8 0.00043 9.3E-09 63.3 12.8 87 347-435 14-100 (356)
163 PF05843 Suf: Suppressor of fo 97.8 0.00097 2.1E-08 58.8 14.4 128 87-217 3-134 (280)
164 COG4235 Cytochrome c biogenesi 97.8 0.0016 3.4E-08 55.8 14.8 113 356-471 143-258 (287)
165 PRK10153 DNA-binding transcrip 97.8 0.0019 4.1E-08 61.9 17.2 62 371-434 421-482 (517)
166 PF14938 SNAP: Soluble NSF att 97.8 0.0018 3.8E-08 57.4 15.6 133 227-362 116-264 (282)
167 PRK02603 photosystem I assembl 97.7 0.0011 2.5E-08 53.7 13.1 97 371-468 36-148 (172)
168 PF01535 PPR: PPR repeat; Int 97.7 4.8E-05 1.1E-09 41.4 3.4 27 263-289 3-29 (31)
169 PF01535 PPR: PPR repeat; Int 97.7 5.2E-05 1.1E-09 41.3 3.5 29 87-115 2-30 (31)
170 PRK15363 pathogenicity island 97.7 0.0018 3.9E-08 50.1 12.8 97 85-183 35-131 (157)
171 PF12895 Apc3: Anaphase-promot 97.7 6.7E-05 1.4E-09 52.6 4.6 82 348-431 2-84 (84)
172 KOG2796 Uncharacterized conser 97.7 0.0061 1.3E-07 50.9 16.0 145 262-409 179-323 (366)
173 PRK10866 outer membrane biogen 97.7 0.025 5.4E-07 48.6 20.8 184 48-251 30-238 (243)
174 PF12688 TPR_5: Tetratrico pep 97.7 0.0022 4.7E-08 47.8 12.3 90 377-466 8-101 (120)
175 PRK10153 DNA-binding transcrip 97.7 0.0068 1.5E-07 58.2 18.9 61 191-253 421-481 (517)
176 KOG0550 Molecular chaperone (D 97.7 0.0047 1E-07 54.9 16.1 159 268-435 177-351 (486)
177 PRK02603 photosystem I assembl 97.6 0.004 8.7E-08 50.5 15.1 92 84-176 34-127 (172)
178 CHL00033 ycf3 photosystem I as 97.6 0.0012 2.7E-08 53.3 12.0 97 370-467 35-140 (168)
179 PF05843 Suf: Suppressor of fo 97.6 0.0014 3E-08 57.8 13.1 47 170-217 51-97 (280)
180 CHL00033 ycf3 photosystem I as 97.6 0.0016 3.5E-08 52.6 12.5 25 88-112 38-62 (168)
181 PF13414 TPR_11: TPR repeat; P 97.6 0.00026 5.7E-09 47.3 6.5 63 405-468 3-66 (69)
182 PF06239 ECSIT: Evolutionarily 97.6 0.00099 2.1E-08 54.1 10.3 105 82-205 44-153 (228)
183 PF14938 SNAP: Soluble NSF att 97.6 0.0036 7.9E-08 55.4 15.1 205 226-466 36-263 (282)
184 PF06239 ECSIT: Evolutionarily 97.6 0.0015 3.3E-08 53.0 11.0 103 294-420 46-153 (228)
185 PF12688 TPR_5: Tetratrico pep 97.5 0.0074 1.6E-07 45.0 13.9 92 91-182 7-102 (120)
186 KOG2796 Uncharacterized conser 97.5 0.012 2.7E-07 49.1 16.0 132 122-254 179-315 (366)
187 PF13432 TPR_16: Tetratricopep 97.5 0.00052 1.1E-08 45.2 6.5 56 412-468 4-59 (65)
188 COG4235 Cytochrome c biogenesi 97.4 0.011 2.3E-07 50.8 15.1 99 84-184 155-256 (287)
189 PF14559 TPR_19: Tetratricopep 97.4 0.00053 1.1E-08 45.6 6.1 50 98-148 4-53 (68)
190 COG4700 Uncharacterized protei 97.4 0.048 1E-06 43.2 16.7 128 82-211 86-214 (251)
191 PF13525 YfiO: Outer membrane 97.4 0.046 9.9E-07 45.7 18.2 64 86-149 6-71 (203)
192 PRK10803 tol-pal system protei 97.3 0.005 1.1E-07 53.3 12.5 95 373-469 146-246 (263)
193 PF14559 TPR_19: Tetratricopep 97.3 0.00097 2.1E-08 44.3 6.4 52 132-184 3-54 (68)
194 KOG0550 Molecular chaperone (D 97.3 0.12 2.6E-06 46.4 23.2 258 61-324 60-350 (486)
195 PF13525 YfiO: Outer membrane 97.3 0.058 1.2E-06 45.1 17.5 182 122-314 7-197 (203)
196 PF13414 TPR_11: TPR repeat; P 97.2 0.0017 3.7E-08 43.3 6.9 63 85-148 3-66 (69)
197 PF13432 TPR_16: Tetratricopep 97.2 0.0018 4E-08 42.5 6.8 53 94-147 6-58 (65)
198 PF03704 BTAD: Bacterial trans 97.2 0.075 1.6E-06 41.7 16.5 70 157-227 64-138 (146)
199 COG4700 Uncharacterized protei 97.1 0.086 1.9E-06 41.8 18.5 127 152-280 86-213 (251)
200 PF13371 TPR_9: Tetratricopept 97.1 0.0024 5.3E-08 43.1 6.6 55 379-434 4-58 (73)
201 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.22 4.7E-06 45.4 30.5 145 70-219 29-190 (660)
202 PRK15331 chaperone protein Sic 97.1 0.042 9.1E-07 43.0 13.5 86 347-434 49-134 (165)
203 KOG1130 Predicted G-alpha GTPa 97.1 0.01 2.3E-07 52.8 11.3 24 297-320 197-220 (639)
204 PF13424 TPR_12: Tetratricopep 97.0 0.0015 3.3E-08 44.8 5.0 63 406-468 6-74 (78)
205 PRK10803 tol-pal system protei 97.0 0.021 4.5E-07 49.6 12.8 97 123-219 146-246 (263)
206 KOG2041 WD40 repeat protein [G 96.9 0.41 8.9E-06 46.2 23.7 61 372-432 1023-1084(1189)
207 PF13281 DUF4071: Domain of un 96.9 0.31 6.7E-06 44.2 20.6 168 121-290 142-335 (374)
208 PRK15331 chaperone protein Sic 96.9 0.014 3.1E-07 45.5 9.8 91 377-469 44-134 (165)
209 PF13281 DUF4071: Domain of un 96.9 0.32 6.9E-06 44.2 21.7 168 155-324 141-334 (374)
210 PF13424 TPR_12: Tetratricopep 96.8 0.0033 7.2E-08 43.1 5.4 63 371-433 6-74 (78)
211 PF03704 BTAD: Bacterial trans 96.7 0.019 4.1E-07 45.1 9.8 71 122-193 64-139 (146)
212 KOG1130 Predicted G-alpha GTPa 96.7 0.019 4.1E-07 51.3 10.3 265 59-323 26-343 (639)
213 PF13371 TPR_9: Tetratricopept 96.7 0.014 3.1E-07 39.3 7.9 54 94-148 4-57 (73)
214 KOG1538 Uncharacterized conser 96.7 0.64 1.4E-05 44.5 20.1 35 143-180 623-657 (1081)
215 PF12921 ATP13: Mitochondrial 96.6 0.053 1.2E-06 40.9 11.0 47 187-233 49-96 (126)
216 PF07079 DUF1347: Protein of u 96.5 0.63 1.4E-05 42.6 39.5 398 56-466 51-521 (549)
217 COG3118 Thioredoxin domain-con 96.5 0.47 1E-05 41.0 17.7 53 94-147 143-195 (304)
218 KOG4555 TPR repeat-containing 96.5 0.058 1.3E-06 39.9 9.9 88 347-435 55-145 (175)
219 KOG1538 Uncharacterized conser 96.4 0.81 1.8E-05 43.9 19.0 89 224-323 746-845 (1081)
220 PF04840 Vps16_C: Vps16, C-ter 96.4 0.67 1.5E-05 41.6 31.2 109 296-429 178-286 (319)
221 KOG0543 FKBP-type peptidyl-pro 96.4 0.043 9.4E-07 49.2 10.3 122 347-470 220-356 (397)
222 COG3118 Thioredoxin domain-con 96.2 0.7 1.5E-05 40.0 17.7 147 128-278 142-290 (304)
223 PF09205 DUF1955: Domain of un 96.2 0.34 7.4E-06 36.2 15.1 136 306-471 13-151 (161)
224 PF12921 ATP13: Mitochondrial 96.2 0.14 3.1E-06 38.6 11.0 53 220-272 47-100 (126)
225 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.2 4.3E-06 46.2 13.7 65 83-149 73-141 (453)
226 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.034 7.3E-07 51.0 8.9 98 369-472 74-177 (453)
227 COG1729 Uncharacterized protei 96.2 0.09 1.9E-06 44.7 10.7 97 372-469 144-244 (262)
228 PF04840 Vps16_C: Vps16, C-ter 96.1 0.97 2.1E-05 40.6 26.9 96 347-462 189-284 (319)
229 PRK11906 transcriptional regul 96.1 0.56 1.2E-05 43.5 16.2 152 311-466 274-433 (458)
230 KOG2280 Vacuolar assembly/sort 96.1 1.6 3.5E-05 42.7 25.9 97 347-462 696-792 (829)
231 PF10300 DUF3808: Protein of u 96.0 0.4 8.7E-06 45.8 15.7 167 298-469 191-376 (468)
232 PF10300 DUF3808: Protein of u 96.0 0.9 1.9E-05 43.5 17.9 177 105-288 177-375 (468)
233 KOG1585 Protein required for f 96.0 0.81 1.8E-05 38.3 16.2 90 373-463 153-250 (308)
234 COG4105 ComL DNA uptake lipopr 95.7 1.1 2.3E-05 38.1 21.8 85 46-131 30-117 (254)
235 PF04053 Coatomer_WDAD: Coatom 95.7 0.51 1.1E-05 44.5 14.7 164 51-250 262-427 (443)
236 smart00299 CLH Clathrin heavy 95.7 0.73 1.6E-05 35.7 15.1 43 90-133 12-54 (140)
237 KOG1941 Acetylcholine receptor 95.7 0.44 9.5E-06 42.2 12.9 122 347-468 134-274 (518)
238 COG5107 RNA14 Pre-mRNA 3'-end 95.7 1.7 3.8E-05 39.9 32.3 132 296-435 398-532 (660)
239 KOG2114 Vacuolar assembly/sort 95.6 1.2 2.6E-05 44.2 16.9 175 159-361 338-516 (933)
240 PF13512 TPR_18: Tetratricopep 95.6 0.54 1.2E-05 36.0 11.9 63 88-150 13-77 (142)
241 KOG0543 FKBP-type peptidyl-pro 95.5 0.34 7.5E-06 43.7 12.1 138 92-253 215-354 (397)
242 PF04053 Coatomer_WDAD: Coatom 95.5 0.83 1.8E-05 43.1 15.4 160 92-285 268-427 (443)
243 COG4649 Uncharacterized protei 95.5 0.95 2.1E-05 35.7 15.2 134 50-183 58-195 (221)
244 PF07035 Mic1: Colon cancer-as 95.5 1 2.2E-05 35.8 15.3 131 280-429 14-144 (167)
245 COG3898 Uncharacterized membra 95.5 1.9 4.1E-05 38.9 31.1 281 133-434 97-392 (531)
246 KOG2610 Uncharacterized conser 95.3 0.67 1.5E-05 40.7 12.9 116 98-215 116-234 (491)
247 PRK11906 transcriptional regul 95.3 2.4 5.3E-05 39.5 17.5 162 86-250 252-432 (458)
248 COG3898 Uncharacterized membra 95.3 2.2 4.8E-05 38.5 31.8 295 157-473 84-396 (531)
249 KOG3941 Intermediate in Toll s 95.2 0.19 4.1E-06 42.8 9.1 36 170-205 138-173 (406)
250 PF13428 TPR_14: Tetratricopep 95.2 0.06 1.3E-06 31.8 4.7 27 408-434 4-30 (44)
251 PF07079 DUF1347: Protein of u 95.2 2.5 5.5E-05 38.9 34.0 256 176-445 246-530 (549)
252 COG1729 Uncharacterized protei 95.2 0.67 1.4E-05 39.6 12.2 97 53-149 144-244 (262)
253 KOG2114 Vacuolar assembly/sort 95.1 0.6 1.3E-05 46.1 13.0 249 121-399 335-590 (933)
254 KOG4555 TPR repeat-containing 95.0 0.66 1.4E-05 34.6 10.2 90 165-255 53-145 (175)
255 PF13428 TPR_14: Tetratricopep 95.0 0.11 2.4E-06 30.7 5.3 28 87-114 3-30 (44)
256 KOG1550 Extracellular protein 95.0 4.2 9E-05 40.1 26.9 282 136-435 228-539 (552)
257 KOG2610 Uncharacterized conser 94.9 1 2.2E-05 39.6 12.7 155 236-397 114-274 (491)
258 PF04184 ST7: ST7 protein; In 94.9 3.4 7.4E-05 38.7 17.5 62 373-434 262-324 (539)
259 PF08631 SPO22: Meiosis protei 94.9 2.6 5.7E-05 37.3 25.0 19 304-322 255-273 (278)
260 PF13176 TPR_7: Tetratricopept 94.8 0.065 1.4E-06 30.0 3.8 28 442-469 1-28 (36)
261 KOG3941 Intermediate in Toll s 94.8 0.31 6.8E-06 41.5 9.1 103 293-420 65-173 (406)
262 PF09205 DUF1955: Domain of un 94.7 1.3 2.8E-05 33.2 13.4 64 192-256 88-151 (161)
263 PF07035 Mic1: Colon cancer-as 94.6 1.8 3.9E-05 34.4 15.0 134 176-323 15-148 (167)
264 PF08631 SPO22: Meiosis protei 94.6 3 6.4E-05 36.9 24.9 99 192-292 86-189 (278)
265 PF13170 DUF4003: Protein of u 94.6 3.1 6.8E-05 37.0 19.7 133 278-413 80-225 (297)
266 COG4649 Uncharacterized protei 94.4 2 4.4E-05 34.0 14.0 125 306-434 69-196 (221)
267 KOG1941 Acetylcholine receptor 94.4 3 6.5E-05 37.3 14.3 231 55-286 11-272 (518)
268 COG3629 DnrI DNA-binding trans 94.3 0.69 1.5E-05 40.2 10.5 79 155-234 153-236 (280)
269 smart00299 CLH Clathrin heavy 94.3 2 4.2E-05 33.3 15.7 126 54-202 10-137 (140)
270 COG4105 ComL DNA uptake lipopr 94.3 3 6.6E-05 35.5 20.5 81 86-166 35-117 (254)
271 PF04097 Nic96: Nup93/Nic96; 94.2 6.7 0.00014 39.2 21.5 43 90-133 116-158 (613)
272 COG2976 Uncharacterized protei 94.2 2.3 5E-05 34.4 12.2 90 376-470 95-189 (207)
273 COG0457 NrfG FOG: TPR repeat [ 94.1 3.1 6.8E-05 35.1 28.7 224 203-434 36-265 (291)
274 COG3629 DnrI DNA-binding trans 94.1 0.81 1.8E-05 39.8 10.5 81 190-271 153-238 (280)
275 PF13512 TPR_18: Tetratricopep 94.1 2.1 4.5E-05 32.9 11.8 87 48-134 8-96 (142)
276 KOG2280 Vacuolar assembly/sort 93.7 7.8 0.00017 38.3 26.9 323 79-430 426-795 (829)
277 KOG4234 TPR repeat-containing 93.5 0.92 2E-05 36.7 9.0 55 413-468 142-196 (271)
278 PF04184 ST7: ST7 protein; In 93.5 6.8 0.00015 36.9 20.1 58 195-252 264-322 (539)
279 KOG1920 IkappaB kinase complex 93.4 12 0.00025 39.4 23.3 31 187-218 788-820 (1265)
280 PF10602 RPN7: 26S proteasome 93.4 1.8 3.9E-05 35.1 11.0 62 86-147 37-100 (177)
281 COG0457 NrfG FOG: TPR repeat [ 93.4 4.3 9.3E-05 34.2 29.7 224 98-323 36-264 (291)
282 COG4785 NlpI Lipoprotein NlpI, 93.4 3.9 8.5E-05 33.8 15.3 186 234-435 74-267 (297)
283 KOG1550 Extracellular protein 93.3 9 0.00019 37.8 25.9 146 67-220 229-394 (552)
284 KOG1258 mRNA processing protei 93.3 8.2 0.00018 37.1 26.3 348 84-461 44-421 (577)
285 KOG1920 IkappaB kinase complex 93.2 12 0.00027 39.1 22.5 26 122-147 792-819 (1265)
286 cd00923 Cyt_c_Oxidase_Va Cytoc 93.2 0.97 2.1E-05 31.7 7.5 62 386-448 23-84 (103)
287 PF13431 TPR_17: Tetratricopep 93.1 0.11 2.4E-06 28.6 2.5 32 428-460 2-33 (34)
288 PF10602 RPN7: 26S proteasome 93.0 1.8 3.9E-05 35.1 10.4 61 262-322 38-100 (177)
289 PF13170 DUF4003: Protein of u 92.9 6.5 0.00014 35.0 22.0 24 137-160 79-102 (297)
290 PF00515 TPR_1: Tetratricopept 92.8 0.26 5.6E-06 27.0 3.8 27 442-468 3-29 (34)
291 PF13176 TPR_7: Tetratricopept 92.6 0.28 6.1E-06 27.4 3.8 23 373-395 2-24 (36)
292 PF02284 COX5A: Cytochrome c o 92.5 0.93 2E-05 32.1 6.8 60 388-448 28-87 (108)
293 PF09613 HrpB1_HrpK: Bacterial 92.3 4.6 0.0001 31.7 13.1 86 347-435 22-107 (160)
294 KOG1464 COP9 signalosome, subu 92.2 6.7 0.00015 33.6 18.1 184 170-355 42-251 (440)
295 KOG1585 Protein required for f 92.1 6.6 0.00014 33.2 17.2 57 297-359 192-251 (308)
296 PF13929 mRNA_stabil: mRNA sta 91.9 8 0.00017 33.7 13.4 168 67-237 113-290 (292)
297 KOG4648 Uncharacterized conser 91.7 0.55 1.2E-05 41.3 6.1 50 347-397 109-158 (536)
298 PF09613 HrpB1_HrpK: Bacterial 91.6 5.6 0.00012 31.3 13.6 50 97-148 22-72 (160)
299 PF02259 FAT: FAT domain; Int 91.5 11 0.00024 34.6 20.9 65 369-433 145-212 (352)
300 PF13431 TPR_17: Tetratricopep 91.5 0.26 5.7E-06 27.1 2.8 22 369-390 12-33 (34)
301 COG2909 MalT ATP-dependent tra 91.1 19 0.00042 36.6 26.7 224 236-465 426-684 (894)
302 PF07719 TPR_2: Tetratricopept 91.0 0.62 1.3E-05 25.3 4.1 29 441-469 2-30 (34)
303 KOG1258 mRNA processing protei 90.7 17 0.00036 35.2 35.7 369 67-454 62-489 (577)
304 cd00923 Cyt_c_Oxidase_Va Cytoc 90.5 2.5 5.3E-05 29.7 7.1 44 69-112 26-69 (103)
305 COG4785 NlpI Lipoprotein NlpI, 90.3 9.4 0.0002 31.7 15.4 161 120-290 99-267 (297)
306 PF00515 TPR_1: Tetratricopept 90.3 0.62 1.3E-05 25.4 3.6 27 372-398 3-29 (34)
307 PF13374 TPR_10: Tetratricopep 90.0 0.75 1.6E-05 26.4 4.1 28 441-468 3-30 (42)
308 KOG4570 Uncharacterized conser 89.4 6.7 0.00014 34.5 10.4 48 205-252 115-162 (418)
309 PRK15180 Vi polysaccharide bio 89.4 6.1 0.00013 36.8 10.8 53 381-434 334-386 (831)
310 COG1747 Uncharacterized N-term 89.3 20 0.00044 34.0 25.2 165 223-399 64-234 (711)
311 TIGR02561 HrpB1_HrpK type III 89.1 9 0.00019 29.7 12.1 51 348-399 23-73 (153)
312 PF07719 TPR_2: Tetratricopept 89.1 0.87 1.9E-05 24.7 3.6 26 373-398 4-29 (34)
313 KOG0890 Protein kinase of the 88.8 51 0.0011 37.9 27.1 152 90-249 1388-1542(2382)
314 PRK11619 lytic murein transgly 88.4 30 0.00065 34.9 30.6 116 349-467 255-373 (644)
315 PF13181 TPR_8: Tetratricopept 88.1 1.4 3E-05 23.9 4.0 29 441-469 2-30 (34)
316 KOG4570 Uncharacterized conser 88.0 11 0.00023 33.3 10.7 103 185-289 59-164 (418)
317 COG2976 Uncharacterized protei 87.6 14 0.0003 30.2 14.3 92 303-399 97-188 (207)
318 PF11207 DUF2989: Protein of u 87.5 6.4 0.00014 32.3 8.8 72 387-459 123-197 (203)
319 PF13374 TPR_10: Tetratricopep 87.4 1.8 3.8E-05 24.8 4.4 27 86-112 3-29 (42)
320 PF13929 mRNA_stabil: mRNA sta 87.1 20 0.00043 31.4 16.3 113 136-248 144-261 (292)
321 PF06552 TOM20_plant: Plant sp 87.1 6.8 0.00015 31.5 8.5 110 351-471 7-138 (186)
322 KOG0276 Vesicle coat complex C 86.9 18 0.00038 35.1 12.3 16 414-429 730-745 (794)
323 PF11207 DUF2989: Protein of u 86.9 14 0.0003 30.4 10.4 72 172-244 123-197 (203)
324 PF02284 COX5A: Cytochrome c o 86.8 9.4 0.0002 27.3 9.0 43 105-147 30-72 (108)
325 COG1747 Uncharacterized N-term 86.7 30 0.00064 33.0 25.2 181 187-380 63-249 (711)
326 PF07575 Nucleopor_Nup85: Nup8 86.5 37 0.00079 33.8 19.4 66 46-112 108-175 (566)
327 COG4455 ImpE Protein of avirul 86.2 6.4 0.00014 32.6 8.1 58 89-147 5-62 (273)
328 KOG0276 Vesicle coat complex C 85.6 18 0.00039 35.0 11.7 103 93-216 645-747 (794)
329 KOG2063 Vacuolar assembly/sort 85.3 50 0.0011 34.3 17.2 38 269-306 600-637 (877)
330 TIGR02561 HrpB1_HrpK type III 85.1 16 0.00035 28.4 11.8 50 98-149 23-73 (153)
331 PF00637 Clathrin: Region in C 84.9 0.43 9.3E-06 37.2 1.1 82 232-320 14-95 (143)
332 TIGR03504 FimV_Cterm FimV C-te 84.8 1.8 3.9E-05 25.5 3.4 26 445-470 4-29 (44)
333 KOG4077 Cytochrome c oxidase, 84.7 7.7 0.00017 28.9 7.1 60 388-448 67-126 (149)
334 COG4455 ImpE Protein of avirul 84.6 9 0.00019 31.8 8.2 54 162-216 8-61 (273)
335 TIGR03504 FimV_Cterm FimV C-te 84.5 3 6.4E-05 24.6 4.1 26 300-325 4-29 (44)
336 PF02259 FAT: FAT domain; Int 84.1 34 0.00074 31.4 24.2 65 294-363 145-212 (352)
337 PF13174 TPR_6: Tetratricopept 83.9 1.9 4.1E-05 23.0 3.2 27 443-469 3-29 (33)
338 COG5159 RPN6 26S proteasome re 83.5 29 0.00064 30.2 13.8 23 374-396 129-151 (421)
339 PF00637 Clathrin: Region in C 83.4 0.43 9.3E-06 37.2 0.5 53 197-249 14-66 (143)
340 PF07163 Pex26: Pex26 protein; 83.0 18 0.0004 31.3 9.8 88 161-248 89-181 (309)
341 PF10345 Cohesin_load: Cohesin 82.6 57 0.0012 32.8 37.0 403 63-468 73-605 (608)
342 PF13181 TPR_8: Tetratricopept 82.6 3.5 7.5E-05 22.2 3.9 27 372-398 3-29 (34)
343 KOG4234 TPR repeat-containing 82.5 21 0.00046 29.3 9.4 88 201-289 106-197 (271)
344 PF07163 Pex26: Pex26 protein; 82.4 21 0.00045 31.1 9.8 90 124-213 87-181 (309)
345 COG3947 Response regulator con 82.4 34 0.00073 30.0 15.6 57 264-321 283-339 (361)
346 cd00280 TRFH Telomeric Repeat 81.5 27 0.00058 28.3 9.8 22 127-148 118-139 (200)
347 PF10579 Rapsyn_N: Rapsyn N-te 81.4 5.6 0.00012 26.8 5.0 46 382-427 18-65 (80)
348 PF10579 Rapsyn_N: Rapsyn N-te 81.0 5.9 0.00013 26.7 5.0 48 417-464 18-67 (80)
349 PF07721 TPR_4: Tetratricopept 80.8 2.5 5.5E-05 21.4 2.6 20 445-464 6-25 (26)
350 KOG1464 COP9 signalosome, subu 80.8 36 0.00079 29.4 17.6 191 60-251 37-257 (440)
351 KOG4648 Uncharacterized conser 79.6 13 0.00029 33.1 8.1 93 93-189 105-197 (536)
352 PF13174 TPR_6: Tetratricopept 78.8 3.1 6.6E-05 22.1 2.8 23 91-113 6-28 (33)
353 COG3947 Response regulator con 78.3 47 0.001 29.2 16.4 72 192-264 281-357 (361)
354 PF06552 TOM20_plant: Plant sp 77.6 30 0.00065 28.0 8.8 41 206-254 96-136 (186)
355 KOG2471 TPR repeat-containing 77.3 68 0.0015 30.5 16.3 104 348-453 253-382 (696)
356 PRK09687 putative lyase; Provi 76.6 54 0.0012 29.0 29.3 233 83-340 35-277 (280)
357 KOG1586 Protein required for f 76.2 47 0.001 28.2 17.8 26 267-292 161-186 (288)
358 COG5187 RPN7 26S proteasome re 74.2 61 0.0013 28.4 13.8 66 120-185 115-185 (412)
359 PHA02875 ankyrin repeat protei 73.9 45 0.00098 31.5 11.0 77 59-143 8-88 (413)
360 smart00028 TPR Tetratricopepti 73.0 7.1 0.00015 19.8 3.4 27 442-468 3-29 (34)
361 PRK09687 putative lyase; Provi 73.0 68 0.0015 28.4 29.0 224 59-306 45-278 (280)
362 PF09986 DUF2225: Uncharacteri 72.9 57 0.0012 27.5 10.7 26 445-470 170-195 (214)
363 KOG4507 Uncharacterized conser 72.7 28 0.00062 33.7 8.7 115 353-469 591-705 (886)
364 TIGR02508 type_III_yscG type I 72.3 33 0.00071 24.6 8.6 58 128-192 47-104 (115)
365 COG2909 MalT ATP-dependent tra 72.0 1.3E+02 0.0028 31.2 27.4 226 201-430 426-684 (894)
366 PHA02875 ankyrin repeat protei 71.9 91 0.002 29.5 16.0 77 95-179 9-89 (413)
367 PF04097 Nic96: Nup93/Nic96; 71.8 1.2E+02 0.0025 30.7 16.6 92 266-364 264-356 (613)
368 KOG2063 Vacuolar assembly/sort 71.7 1.4E+02 0.0029 31.4 17.9 115 304-418 600-745 (877)
369 KOG2066 Vacuolar assembly/sort 71.5 1.2E+02 0.0026 30.8 26.1 102 92-202 363-467 (846)
370 KOG4077 Cytochrome c oxidase, 70.4 37 0.00081 25.5 7.1 43 105-147 69-111 (149)
371 PF10345 Cohesin_load: Cohesin 70.1 1.3E+02 0.0028 30.4 34.0 185 67-252 38-252 (608)
372 PRK10941 hypothetical protein; 69.8 32 0.0007 30.1 8.1 62 373-435 184-245 (269)
373 PF08424 NRDE-2: NRDE-2, neces 69.6 88 0.0019 28.4 17.0 80 101-182 47-129 (321)
374 KOG4507 Uncharacterized conser 69.2 38 0.00081 32.9 8.7 102 346-449 618-719 (886)
375 PF13762 MNE1: Mitochondrial s 68.3 55 0.0012 25.5 10.3 80 88-167 42-127 (145)
376 PF12862 Apc5: Anaphase-promot 67.3 27 0.00059 24.7 6.1 19 450-468 51-69 (94)
377 COG5187 RPN7 26S proteasome re 66.2 93 0.002 27.4 13.9 26 225-250 115-140 (412)
378 KOG3364 Membrane protein invol 66.0 58 0.0013 24.9 9.3 66 369-434 31-100 (149)
379 PF00244 14-3-3: 14-3-3 protei 65.9 67 0.0015 27.6 9.2 56 196-251 7-63 (236)
380 PF14689 SPOB_a: Sensor_kinase 63.7 24 0.00053 22.6 4.7 17 198-214 31-47 (62)
381 PRK10564 maltose regulon perip 63.4 16 0.00036 32.1 5.0 39 86-124 258-296 (303)
382 PF08424 NRDE-2: NRDE-2, neces 62.9 1.2E+02 0.0026 27.5 17.2 79 137-217 48-129 (321)
383 COG0790 FOG: TPR repeat, SEL1 61.9 1.2E+02 0.0025 27.0 24.2 150 98-256 54-222 (292)
384 PF14689 SPOB_a: Sensor_kinase 61.7 22 0.00048 22.8 4.3 46 136-183 6-51 (62)
385 COG0735 Fur Fe2+/Zn2+ uptake r 61.3 54 0.0012 25.6 7.2 46 374-419 24-69 (145)
386 KOG2297 Predicted translation 61.3 1.2E+02 0.0026 27.0 13.8 43 70-112 150-194 (412)
387 KOG1308 Hsp70-interacting prot 61.0 5.7 0.00012 35.4 1.9 120 347-471 126-246 (377)
388 PF10255 Paf67: RNA polymerase 60.3 70 0.0015 30.0 8.7 62 407-468 124-192 (404)
389 cd00280 TRFH Telomeric Repeat 60.3 61 0.0013 26.3 7.2 49 351-399 85-140 (200)
390 COG0735 Fur Fe2+/Zn2+ uptake r 60.1 81 0.0017 24.6 8.0 25 266-290 26-50 (145)
391 PF11846 DUF3366: Domain of un 59.7 53 0.0012 27.0 7.4 35 401-435 140-174 (193)
392 PF11848 DUF3368: Domain of un 59.0 37 0.00081 20.4 5.1 27 98-124 15-41 (48)
393 PRK15180 Vi polysaccharide bio 58.9 1.7E+02 0.0037 27.9 27.2 126 56-185 295-421 (831)
394 PRK13342 recombination factor 58.8 1.7E+02 0.0036 27.8 19.7 33 383-415 243-275 (413)
395 PF11846 DUF3366: Domain of un 58.3 57 0.0012 26.9 7.4 52 417-468 120-172 (193)
396 COG5108 RPO41 Mitochondrial DN 58.1 88 0.0019 31.1 9.1 92 89-183 32-131 (1117)
397 PF08311 Mad3_BUB1_I: Mad3/BUB 58.1 80 0.0017 23.9 12.5 81 384-467 40-126 (126)
398 PF12862 Apc5: Anaphase-promot 57.9 64 0.0014 22.8 7.6 57 56-112 4-68 (94)
399 KOG0686 COP9 signalosome, subu 57.8 1.6E+02 0.0035 27.4 14.2 94 155-250 150-254 (466)
400 PF14669 Asp_Glu_race_2: Putat 57.7 1.1E+02 0.0023 25.2 16.9 83 373-465 110-206 (233)
401 PF14853 Fis1_TPR_C: Fis1 C-te 57.4 24 0.00052 21.8 3.7 36 411-448 7-42 (53)
402 KOG0686 COP9 signalosome, subu 56.5 1.7E+02 0.0037 27.3 15.1 63 191-253 151-215 (466)
403 cd08819 CARD_MDA5_2 Caspase ac 56.4 66 0.0014 22.4 6.9 64 70-139 22-85 (88)
404 KOG3677 RNA polymerase I-assoc 56.2 1.7E+02 0.0038 27.3 10.6 57 124-181 239-298 (525)
405 COG5108 RPO41 Mitochondrial DN 55.8 1.1E+02 0.0025 30.4 9.4 90 195-287 33-130 (1117)
406 PF09670 Cas_Cas02710: CRISPR- 55.3 1.8E+02 0.0039 27.2 12.3 54 94-148 140-197 (379)
407 KOG0991 Replication factor C, 54.7 1.4E+02 0.003 25.6 9.8 138 298-450 133-282 (333)
408 PF11848 DUF3368: Domain of un 54.5 46 0.00099 20.0 5.0 26 274-299 16-41 (48)
409 PF09477 Type_III_YscG: Bacter 54.2 83 0.0018 22.9 10.7 80 99-185 20-99 (116)
410 PRK09857 putative transposase; 53.3 1.1E+02 0.0023 27.4 8.5 63 410-473 211-273 (292)
411 KOG1308 Hsp70-interacting prot 52.4 26 0.00057 31.4 4.4 121 304-433 123-243 (377)
412 KOG4642 Chaperone-dependent E3 52.2 1.5E+02 0.0033 25.4 11.0 79 350-431 25-104 (284)
413 PF14853 Fis1_TPR_C: Fis1 C-te 51.8 52 0.0011 20.3 4.5 35 375-411 6-40 (53)
414 PF11663 Toxin_YhaV: Toxin wit 50.8 20 0.00043 27.2 3.0 31 237-269 107-137 (140)
415 TIGR02508 type_III_yscG type I 50.4 93 0.002 22.4 8.2 86 66-159 21-106 (115)
416 PRK10564 maltose regulon perip 50.2 38 0.00082 30.0 5.0 29 194-222 261-289 (303)
417 PF09670 Cas_Cas02710: CRISPR- 50.1 2.2E+02 0.0048 26.6 11.9 60 54-114 135-198 (379)
418 PF04190 DUF410: Protein of un 50.1 1.8E+02 0.0038 25.5 16.1 27 368-394 88-114 (260)
419 PRK13342 recombination factor 49.9 2.3E+02 0.0051 26.9 19.5 22 308-329 243-264 (413)
420 COG2256 MGS1 ATPase related to 49.5 2.3E+02 0.0049 26.6 18.3 104 84-204 191-298 (436)
421 KOG4279 Serine/threonine prote 49.3 2.5E+02 0.0054 28.7 10.6 209 242-464 145-368 (1226)
422 PF11663 Toxin_YhaV: Toxin wit 48.7 21 0.00046 27.1 2.9 31 167-199 107-137 (140)
423 KOG0687 26S proteasome regulat 48.3 2.1E+02 0.0046 25.8 15.0 98 155-254 104-210 (393)
424 KOG4567 GTPase-activating prot 48.1 1.3E+02 0.0029 26.8 7.8 71 245-320 263-343 (370)
425 KOG0403 Neoplastic transformat 48.0 2.5E+02 0.0054 26.6 18.4 26 263-288 348-373 (645)
426 PF10366 Vps39_1: Vacuolar sor 47.8 51 0.0011 24.1 4.8 27 262-288 41-67 (108)
427 cd08819 CARD_MDA5_2 Caspase ac 47.8 94 0.002 21.7 7.5 36 237-277 48-83 (88)
428 KOG2297 Predicted translation 47.8 2.1E+02 0.0045 25.6 16.5 74 233-315 263-341 (412)
429 PF00244 14-3-3: 14-3-3 protei 47.6 1.8E+02 0.004 25.0 11.7 57 230-286 6-63 (236)
430 PF07575 Nucleopor_Nup85: Nup8 47.5 65 0.0014 32.1 7.0 59 192-252 407-465 (566)
431 PRK08691 DNA polymerase III su 47.5 3E+02 0.0065 28.2 11.2 83 352-437 181-277 (709)
432 PF11817 Foie-gras_1: Foie gra 47.1 88 0.0019 27.1 7.0 21 376-396 184-204 (247)
433 PF09454 Vps23_core: Vps23 cor 47.1 58 0.0013 21.2 4.4 49 83-132 6-54 (65)
434 smart00777 Mad3_BUB1_I Mad3/BU 47.0 1.2E+02 0.0027 22.9 8.9 44 422-465 80-124 (125)
435 PF08542 Rep_fac_C: Replicatio 47.0 88 0.0019 21.6 5.9 49 49-98 3-51 (89)
436 KOG2034 Vacuolar sorting prote 46.9 3.6E+02 0.0078 28.2 27.5 172 126-321 364-556 (911)
437 KOG1586 Protein required for f 46.1 1.9E+02 0.0042 24.8 19.1 29 298-326 157-185 (288)
438 PRK11619 lytic murein transgly 45.9 3.4E+02 0.0074 27.6 38.1 144 51-204 34-177 (644)
439 PF04190 DUF410: Protein of un 45.3 2.1E+02 0.0046 25.0 19.0 25 154-178 89-113 (260)
440 KOG1839 Uncharacterized protei 45.2 3.1E+02 0.0068 30.0 11.3 27 152-178 970-996 (1236)
441 PF10475 DUF2450: Protein of u 44.9 2.3E+02 0.005 25.3 9.7 114 161-285 104-222 (291)
442 PF11817 Foie-gras_1: Foie gra 44.8 1.4E+02 0.003 25.9 7.8 57 160-216 183-244 (247)
443 PF09454 Vps23_core: Vps23 cor 44.0 49 0.0011 21.5 3.7 47 154-201 7-53 (65)
444 KOG0376 Serine-threonine phosp 43.5 61 0.0013 30.7 5.5 100 129-233 13-113 (476)
445 KOG1498 26S proteasome regulat 42.5 2.9E+02 0.0062 25.8 15.7 90 374-470 135-242 (439)
446 KOG3364 Membrane protein invol 42.4 1.6E+02 0.0034 22.7 9.9 70 328-399 30-100 (149)
447 PRK10941 hypothetical protein; 42.4 2.4E+02 0.0052 24.9 10.9 57 196-253 187-243 (269)
448 PF04090 RNA_pol_I_TF: RNA pol 42.0 1.6E+02 0.0035 24.5 7.2 28 372-399 43-70 (199)
449 KOG2066 Vacuolar assembly/sort 41.9 4.1E+02 0.0089 27.4 26.4 148 61-217 367-532 (846)
450 smart00386 HAT HAT (Half-A-TPR 41.5 51 0.0011 16.9 3.8 28 419-447 1-28 (33)
451 PF10366 Vps39_1: Vacuolar sor 41.4 81 0.0018 23.1 5.0 27 372-398 41-67 (108)
452 KOG0890 Protein kinase of the 41.2 6.9E+02 0.015 29.8 29.6 298 160-471 1388-1733(2382)
453 PRK14958 DNA polymerase III su 40.2 3.7E+02 0.0081 26.4 11.3 74 362-438 192-278 (509)
454 PF13762 MNE1: Mitochondrial s 40.1 1.8E+02 0.0039 22.7 12.4 80 193-272 42-127 (145)
455 KOG4642 Chaperone-dependent E3 40.0 2.5E+02 0.0053 24.2 11.0 80 98-181 23-104 (284)
456 KOG2659 LisH motif-containing 39.8 2.4E+02 0.0051 24.0 8.7 100 364-465 20-128 (228)
457 KOG0687 26S proteasome regulat 39.6 2.9E+02 0.0063 25.0 15.4 67 261-327 105-176 (393)
458 PRK09857 putative transposase; 39.5 2.8E+02 0.0061 24.8 9.4 28 195-222 245-272 (292)
459 smart00638 LPD_N Lipoprotein N 39.4 4.1E+02 0.0088 26.6 25.8 200 83-289 308-525 (574)
460 KOG4567 GTPase-activating prot 39.2 2.9E+02 0.0062 24.8 9.7 86 140-234 263-358 (370)
461 PRK14963 DNA polymerase III su 38.9 3.9E+02 0.0084 26.3 11.2 83 351-436 177-272 (504)
462 KOG0545 Aryl-hydrocarbon recep 38.6 2.6E+02 0.0057 24.2 9.4 59 376-435 236-294 (329)
463 KOG0376 Serine-threonine phosp 38.2 94 0.002 29.5 5.9 100 60-163 14-113 (476)
464 KOG0551 Hsp90 co-chaperone CNS 38.0 1.6E+02 0.0035 26.6 6.9 83 347-431 93-179 (390)
465 COG0790 FOG: TPR repeat, SEL1 37.9 2.9E+02 0.0062 24.5 24.7 149 64-221 55-222 (292)
466 PRK11639 zinc uptake transcrip 37.8 1.6E+02 0.0035 23.7 6.7 63 71-134 12-74 (169)
467 KOG0292 Vesicle coat complex C 37.7 3.7E+02 0.0081 28.2 10.0 176 168-398 606-781 (1202)
468 PF14561 TPR_20: Tetratricopep 37.0 1.5E+02 0.0032 20.8 8.6 27 86-112 23-49 (90)
469 PRK06645 DNA polymerase III su 36.7 4.2E+02 0.0092 26.0 11.3 84 351-437 189-289 (507)
470 cd02680 MIT_calpain7_2 MIT: do 36.6 80 0.0017 21.3 3.9 19 417-435 18-36 (75)
471 PRK14956 DNA polymerase III su 36.5 4.1E+02 0.0089 25.8 10.6 45 352-398 183-228 (484)
472 PF12926 MOZART2: Mitotic-spin 35.8 1.5E+02 0.0033 20.6 8.5 48 65-113 24-71 (88)
473 PF04910 Tcf25: Transcriptiona 34.9 3.8E+02 0.0082 24.9 22.5 113 294-415 99-234 (360)
474 PF09868 DUF2095: Uncharacteri 34.4 1.9E+02 0.0041 21.3 5.7 24 92-115 68-91 (128)
475 PF09477 Type_III_YscG: Bacter 34.4 1.9E+02 0.004 21.2 9.3 80 64-150 20-99 (116)
476 cd07153 Fur_like Ferric uptake 34.3 1.4E+02 0.0031 21.9 5.6 23 275-297 15-37 (116)
477 PF10516 SHNi-TPR: SHNi-TPR; 34.3 92 0.002 17.6 3.4 28 441-468 2-29 (38)
478 cd07153 Fur_like Ferric uptake 34.1 1E+02 0.0022 22.7 4.8 37 99-135 14-50 (116)
479 KOG0991 Replication factor C, 33.8 3.1E+02 0.0067 23.6 15.0 70 347-418 204-285 (333)
480 PF13934 ELYS: Nuclear pore co 33.8 3E+02 0.0065 23.5 15.3 55 375-432 113-167 (226)
481 PF04762 IKI3: IKI3 family; I 32.9 6.6E+02 0.014 27.1 17.1 198 160-396 699-927 (928)
482 KOG4814 Uncharacterized conser 32.8 5.3E+02 0.011 26.0 10.2 86 347-433 366-456 (872)
483 PF09868 DUF2095: Uncharacteri 32.8 2E+02 0.0044 21.2 5.6 25 161-185 67-91 (128)
484 PF02847 MA3: MA3 domain; Int 32.8 1.9E+02 0.0042 21.0 6.9 22 265-286 7-28 (113)
485 PF02607 B12-binding_2: B12 bi 32.3 1.1E+02 0.0023 20.6 4.3 42 54-95 5-46 (79)
486 KOG2396 HAT (Half-A-TPR) repea 32.2 4.8E+02 0.01 25.3 37.5 94 373-468 463-558 (568)
487 PF04090 RNA_pol_I_TF: RNA pol 31.9 3E+02 0.0065 22.9 7.7 51 85-136 41-92 (199)
488 KOG3807 Predicted membrane pro 31.8 3.9E+02 0.0085 24.2 11.1 141 62-220 196-341 (556)
489 PF01475 FUR: Ferric uptake re 31.8 1.4E+02 0.003 22.2 5.2 31 266-296 13-43 (120)
490 PRK14700 recombination factor 31.7 3.8E+02 0.0083 24.0 18.4 191 47-253 17-229 (300)
491 PF12796 Ank_2: Ankyrin repeat 31.0 1.3E+02 0.0028 20.6 4.7 17 460-476 72-88 (89)
492 PF02847 MA3: MA3 domain; Int 30.6 2.1E+02 0.0046 20.8 6.4 21 91-111 8-28 (113)
493 PRK09462 fur ferric uptake reg 30.4 2.6E+02 0.0057 21.8 7.2 64 176-239 3-66 (148)
494 PF04910 Tcf25: Transcriptiona 30.2 4.5E+02 0.0098 24.4 21.5 56 197-252 110-166 (360)
495 COG4941 Predicted RNA polymera 30.0 4.3E+02 0.0094 24.1 11.1 119 347-468 268-393 (415)
496 PF15297 CKAP2_C: Cytoskeleton 30.0 4.4E+02 0.0095 24.2 9.6 77 372-450 105-185 (353)
497 PF01475 FUR: Ferric uptake re 29.9 91 0.002 23.2 3.9 33 101-133 23-55 (120)
498 KOG0128 RNA-binding protein SA 29.7 6.6E+02 0.014 26.2 36.0 199 84-288 112-340 (881)
499 PRK07003 DNA polymerase III su 29.2 6.9E+02 0.015 26.2 15.1 45 277-323 181-226 (830)
500 PF03745 DUF309: Domain of unk 29.0 1.6E+02 0.0035 18.9 6.8 47 96-142 10-61 (62)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.5e-63 Score=494.47 Aligned_cols=419 Identities=19% Similarity=0.323 Sum_probs=402.0
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 011714 51 SLQAQRFVDRIKASPLKERIDIFDSIKKDGT-NWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRC 129 (479)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (479)
+.....+...++.|++++|+++|+.|.+.|+ .++...++.++..|.+.|..++|+.+|+.|.. ||..+|+.++.+
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a 446 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSV 446 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHH
Confidence 4445555566688999999999999999885 57888889999999999999999999999973 999999999999
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011714 130 YCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEA 209 (479)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 209 (479)
|++.|++++|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH--CCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011714 210 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIE--RGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMK 287 (479)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 287 (479)
.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+.+|.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986 5789999999999999999999999999999999
Q ss_pred hCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCC
Q 011714 288 KRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSV 367 (479)
Q Consensus 288 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 367 (479)
+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+++ +.|++++|.++|+.|.+.+..
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~-----k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG-----HAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999997 679999999999999999999
Q ss_pred CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 011714 368 TDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLI 447 (479)
Q Consensus 368 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 447 (479)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCHhHHHHHHHHHHhCCCCCCCCCC
Q 011714 448 TKLDQLEKSYDACALYGAALKQGVIPQRKPQ 478 (479)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 478 (479)
.+|++.|++++|.++++.|++.|+.||..++
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~ty 792 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMC 792 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999999999997554
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6e-63 Score=492.82 Aligned_cols=414 Identities=20% Similarity=0.281 Sum_probs=393.9
Q ss_pred HHHHHH-hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 011714 56 RFVDRI-KASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKN 134 (479)
Q Consensus 56 ~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (479)
.++..+ +.+...+|+.+++.|.. |+..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 411 ~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G 486 (1060)
T PLN03218 411 KFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG 486 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc
Confidence 334433 45668999999998874 8999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011714 135 DFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLM 214 (479)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 214 (479)
++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+
T Consensus 487 ~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~ 566 (1060)
T PLN03218 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLA 566 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH--CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 011714 215 NVKN--DGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCL 292 (479)
Q Consensus 215 ~~~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 292 (479)
+|.. .|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.
T Consensus 567 eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~ 646 (1060)
T PLN03218 567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646 (1060)
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 9986 57899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhh
Q 011714 293 PDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGT 372 (479)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 372 (479)
||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|+ +.|++++|.++|+.|...+..||..+
T Consensus 647 PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~-----k~G~~eeA~~lf~eM~~~g~~Pdvvt 721 (1060)
T PLN03218 647 PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS-----NAKNWKKALELYEDIKSIKLRPTVST 721 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999998 77999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQ 452 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 452 (479)
|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+
T Consensus 722 yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~ 801 (1060)
T PLN03218 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR 801 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876432
Q ss_pred ----c-------------------CCHhHHHHHHHHHHhCCCCCCCCCC
Q 011714 453 ----L-------------------EKSYDACALYGAALKQGVIPQRKPQ 478 (479)
Q Consensus 453 ----~-------------------g~~~~A~~~~~~~~~~~~~p~~~~~ 478 (479)
. +..++|..+|++|++.|+.||..|+
T Consensus 802 ~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 802 RFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVL 850 (1060)
T ss_pred HHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHH
Confidence 1 2246799999999999999997654
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8e-57 Score=446.60 Aligned_cols=397 Identities=19% Similarity=0.312 Sum_probs=377.9
Q ss_pred HHhcCChhhHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 011714 60 RIKASPLKERIDIFDSIKKDG-TNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFE 138 (479)
Q Consensus 60 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 138 (479)
..+.++..+|+.+|+.|...+ ..|+..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.++.+|++.|++++
T Consensus 97 l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~ 176 (697)
T PLN03081 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLID 176 (697)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHH
Confidence 356788999999999998764 6789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011714 139 ARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKN 218 (479)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (479)
|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++..+.+
T Consensus 177 A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 252 (697)
T PLN03081 177 ARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252 (697)
T ss_pred HHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999996 4799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHH
Q 011714 219 DGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISY 298 (479)
Q Consensus 219 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 298 (479)
.|+.||..+|+.++.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 253 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~ 328 (697)
T PLN03081 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328 (697)
T ss_pred hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999954 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011714 299 STLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIR 378 (479)
Q Consensus 299 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 378 (479)
+.++.+|++.|++++|.+++.+|.+.|+.|+..+++.++.+|+ +.|++++|.++|+.|.+ ||..+||.||.
T Consensus 329 ~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~-----k~G~~~~A~~vf~~m~~----~d~~t~n~lI~ 399 (697)
T PLN03081 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS-----KWGRMEDARNVFDRMPR----KNLISWNALIA 399 (697)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHH-----HCCCHHHHHHHHHhCCC----CCeeeHHHHHH
Confidence 9999999999999999999999999999999999999999998 67999999999999865 58889999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHhccCCHh
Q 011714 379 TLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYE-HAKIPSRTSYDMLITKLDQLEKSY 457 (479)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~ 457 (479)
+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .++.|+..+|+.++++|++.|+.+
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 9999999999999999999999999999999999999999999999999999986 588999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCC
Q 011714 458 DACALYGAALKQGVIPQRK 476 (479)
Q Consensus 458 ~A~~~~~~~~~~~~~p~~~ 476 (479)
+|.+++++| ++.|+..
T Consensus 480 eA~~~~~~~---~~~p~~~ 495 (697)
T PLN03081 480 EAYAMIRRA---PFKPTVN 495 (697)
T ss_pred HHHHHHHHC---CCCCCHH
Confidence 999998765 5666643
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-56 Score=442.28 Aligned_cols=407 Identities=18% Similarity=0.263 Sum_probs=362.5
Q ss_pred CcchHHHHHHHHHH-hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 011714 48 NPRSLQAQRFVDRI-KASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIM 126 (479)
Q Consensus 48 ~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 126 (479)
.|....+..++..+ +.+..+.+..++..|.+.|..||..+||.++..|++.|+++.|.++|++|. .||..+|+.+
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~l 195 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTI 195 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHH
Confidence 35556666666654 445677788888888888888888888888888888888888888888876 4677788888
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCC-----------------------------------CHHHHHHHHHHHHhcCCh
Q 011714 127 IRCYCNKNDFFEARKVIDCMFDNGYHP-----------------------------------NVTTFTILVNSLCKSGRL 171 (479)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------------------------~~~~~~~li~~~~~~g~~ 171 (479)
+.+|++.|++++|.++|++|.+.|+.| |..+|+.|+.+|+++|++
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 275 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH
Confidence 888888888888888888876655544 555668888999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 011714 172 KEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEA 251 (479)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 251 (479)
++|.++|++|. ++|..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|
T Consensus 276 ~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m 351 (697)
T PLN03081 276 EDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL 351 (697)
T ss_pred HHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 99999999997 56899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHH
Q 011714 252 IERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDER 331 (479)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 331 (479)
.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..
T Consensus 352 ~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~ 427 (697)
T PLN03081 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427 (697)
T ss_pred HHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 9999999999999999999999999999999999965 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccchhhccHHHHHHHHHHHHh-CCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHH
Q 011714 332 MMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTK-KVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNN 410 (479)
Q Consensus 332 ~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 410 (479)
+|..++.++. +.|.+++|.++|+.|.+ .+..|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|++
T Consensus 428 T~~~ll~a~~-----~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~ 499 (697)
T PLN03081 428 TFLAVLSACR-----YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAA 499 (697)
T ss_pred HHHHHHHHHh-----cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHH
Confidence 9999999997 67999999999999986 688999999999999999999999999998765 67899999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCC
Q 011714 411 VIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIPQR 475 (479)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 475 (479)
++.+|...|+++.|..+++++.+.+ +.+..+|..|++.|.+.|++++|.++++.|.+.|+....
T Consensus 500 Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 500 LLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 9999999999999999999998664 346789999999999999999999999999999987543
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-55 Score=447.93 Aligned_cols=394 Identities=18% Similarity=0.252 Sum_probs=265.9
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHH
Q 011714 62 KASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARK 141 (479)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 141 (479)
+.|++++|..+|+.|.+ +|..+||.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++.+.+
T Consensus 234 k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 234 KCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred cCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 44555666666665542 35555666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011714 142 VIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGL 221 (479)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 221 (479)
++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 66666665666666666666666666666666666655554 34555555555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC------------
Q 011714 222 KPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR------------ 289 (479)
Q Consensus 222 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------ 289 (479)
.||..||+.++.+|++.|++++|.++++.+.+.|..|+..+|+.|+.+|++.|++++|.++|++|.+.
T Consensus 386 ~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~ 465 (857)
T PLN03077 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL 465 (857)
T ss_pred CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555544321
Q ss_pred ------------------CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccH
Q 011714 290 ------------------NCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLL 351 (479)
Q Consensus 290 ------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 351 (479)
++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.++..+++.++.+|+ ++|++
T Consensus 466 ~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~-----k~G~~ 540 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV-----RCGRM 540 (857)
T ss_pred HHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHH-----HcCCH
Confidence 3455555555555555555555555556555555566666666666666665 56888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011714 352 EDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLM 431 (479)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 431 (479)
++|..+|+.+ .+|..+|+.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|
T Consensus 541 ~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 541 NYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred HHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHH
Confidence 8888888776 45888999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-hCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCCC
Q 011714 432 Y-EHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIPQRK 476 (479)
Q Consensus 432 ~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 476 (479)
. +.++.|+..+|+.++.+|++.|++++|.+++++| .+.||..
T Consensus 616 ~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~ 658 (857)
T PLN03077 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPA 658 (857)
T ss_pred HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHH
Confidence 8 6788999999999999999999999999999987 3667643
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.3e-55 Score=446.46 Aligned_cols=415 Identities=15% Similarity=0.184 Sum_probs=363.0
Q ss_pred CCCcchHHHHHHHHHHh-cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 011714 46 KENPRSLQAQRFVDRIK-ASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFS 124 (479)
Q Consensus 46 ~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 124 (479)
...|....+..++..+. .+.+..+.+++..+.+.|..|++.+||.|+.+|++.|+++.|.++|++|. .||..+|+
T Consensus 182 g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n 257 (857)
T PLN03077 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWN 257 (857)
T ss_pred CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhH
Confidence 45677777888887764 45678999999999999999999999999999999999999999999997 57889999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 011714 125 IMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVG 204 (479)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 204 (479)
.+|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.|+++.+.+++..|.+.|+.||..+|+.++.+|++.|
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 337 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHH
Q 011714 205 RVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLK 284 (479)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 284 (479)
++++|.++|++|. .||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++++
T Consensus 338 ~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 338 SWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred CHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 9999999999996 468999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc------------------------------CCCcCHHHHH
Q 011714 285 LMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRF------------------------------GFEVDERMMN 334 (479)
Q Consensus 285 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------------~~~~~~~~~~ 334 (479)
.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+. ++.||..++.
T Consensus 414 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~ 493 (857)
T PLN03077 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLI 493 (857)
T ss_pred HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHH
Confidence 9999999999999999999999999999998888877532 2344444444
Q ss_pred HHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 011714 335 SLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQA 414 (479)
Q Consensus 335 ~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 414 (479)
.++.+++ +.|.++.+.+++..+.+.+..++..+++.++.+|++.|+.++|.++|+.+ .||..+|+.+|.+
T Consensus 494 ~lL~a~~-----~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~ 563 (857)
T PLN03077 494 AALSACA-----RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTG 563 (857)
T ss_pred HHHHHHh-----hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHH
Confidence 4444443 33445555555555555555555555566666677777777777777664 5788899999999
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHH-hCCCCCCCCCC
Q 011714 415 LCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAAL-KQGVIPQRKPQ 478 (479)
Q Consensus 415 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~ 478 (479)
|++.|+.++|+++|++|.+.|+.||..+|+.++.+|.+.|.+++|.++|+.|. +.|+.|+..+|
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999998 67999987664
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=7.1e-26 Score=235.70 Aligned_cols=386 Identities=13% Similarity=0.102 Sum_probs=182.9
Q ss_pred CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 011714 64 SPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVI 143 (479)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (479)
++.++|+..++.+.+.++. +..++..+...+.+.|+.++|..+++++.+.+ +.+...+..++..+...|++++|..++
T Consensus 513 g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred CCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 3344444444444333221 33444444444444444444444444443332 233334444444444444444444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011714 144 DCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKP 223 (479)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 223 (479)
+.+.+.. +.+...|..+..++...|++++|.+.|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.
T Consensus 591 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 667 (899)
T TIGR02917 591 NEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PD 667 (899)
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 4444322 2334444444444444444444444444444332 2233444444444444444444444444444332 11
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011714 224 DVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLN 303 (479)
Q Consensus 224 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 303 (479)
+..++..++..+...|++++|.++++.+.+.. +.+...+..+...+...|++++|+..++.+...+ |+..++..+..
T Consensus 668 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 744 (899)
T TIGR02917 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHR 744 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHH
Confidence 34444444444444555555555554444432 2233444444455555555555555555554432 22234444455
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC
Q 011714 304 GLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKG 383 (479)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (479)
++...|++++|.+.+..+.+.. +.+...+..+...+. ..|+.++|...|+++.+..+. +...++.++..+...
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYL-----AQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-----HCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 5555555555555555544432 123333333333332 345555555555555554332 445555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHH
Q 011714 384 KKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALY 463 (479)
Q Consensus 384 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 463 (479)
|+ .+|+.+++++.+.. +.+..++..+..++...|++++|..+++++++.+ +.+..++..++.++.+.|++++|.+++
T Consensus 818 ~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 818 KD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred Cc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55 55555555555432 1133444555555666666666666666666654 225556666666666666666666666
Q ss_pred HHHH
Q 011714 464 GAAL 467 (479)
Q Consensus 464 ~~~~ 467 (479)
++|+
T Consensus 895 ~~~~ 898 (899)
T TIGR02917 895 DKLL 898 (899)
T ss_pred HHHh
Confidence 6654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=3.4e-25 Score=230.64 Aligned_cols=390 Identities=13% Similarity=0.086 Sum_probs=233.6
Q ss_pred CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 011714 64 SPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVI 143 (479)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (479)
++.++|+..|+.+.+.+.. +...+..+...+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++|...+
T Consensus 479 ~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 556 (899)
T TIGR02917 479 GDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWL 556 (899)
T ss_pred CCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3344444444443332221 23333334444444444444444444444332 233444444444444444444444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011714 144 DCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKP 223 (479)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 223 (479)
+++...+ +.+...+..++..+.+.|++++|.++++.+.+.. +.+..+|..+..++...|++++|...|+.+.+.. +.
T Consensus 557 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 633 (899)
T TIGR02917 557 EKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PD 633 (899)
T ss_pred HHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 4444332 2334444455555555555555555555555432 3445556666666666666666666666655442 22
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011714 224 DVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLN 303 (479)
Q Consensus 224 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 303 (479)
+...+..+..++...|++++|...++++.+.. +.+..++..++..+...|++++|.++++.+...+ +.+...+..+..
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 711 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGD 711 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHH
Confidence 44555556666666666666666666665542 2245556666666666666666666666665554 235556666667
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC
Q 011714 304 GLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKG 383 (479)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (479)
.+...|++++|...+..+...+ |+...+..+...+. ..|++++|...++.+....+. +...+..+...|...
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~ 783 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALL-----ASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQ 783 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHH-----HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC
Confidence 7777777777777777776653 33344444555554 557778888888777766544 667777788888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHH
Q 011714 384 KKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALY 463 (479)
Q Consensus 384 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 463 (479)
|++++|.+.|+++.+.. +.+..++..+...+...|+ .+|+.+++++.+.. +.+...+..++.++...|++++|.+.+
T Consensus 784 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~ 860 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLL 860 (899)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888887653 3466777888888888888 77888888887764 345667777888888889999999999
Q ss_pred HHHHhCCC
Q 011714 464 GAALKQGV 471 (479)
Q Consensus 464 ~~~~~~~~ 471 (479)
+++++.+.
T Consensus 861 ~~a~~~~~ 868 (899)
T TIGR02917 861 RKAVNIAP 868 (899)
T ss_pred HHHHhhCC
Confidence 99888654
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=3e-20 Score=194.45 Aligned_cols=398 Identities=13% Similarity=0.053 Sum_probs=263.2
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHhH------------HH
Q 011714 59 DRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAP-NSWTF------------SI 125 (479)
Q Consensus 59 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~------------~~ 125 (479)
..+..++.++|+..|+...+.++. +...+..+...+.+.|++++|+..|++..+..... ....+ ..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 345678899999999998876654 78889999999999999999999999988764211 11112 12
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 011714 126 MIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGR 205 (479)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 205 (479)
....+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|++..+.. +.+...+..+...+. .++
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcC
Confidence 2456778999999999999999874 4567788889999999999999999999998764 334555555554442 234
Q ss_pred HHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 011714 206 VEEAYEMLMNVKNDGLK--------PDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPM 277 (479)
Q Consensus 206 ~~~a~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 277 (479)
.++|+.+++.+...... .....+..+...+...|++++|++.|+++++.... +...+..+...|.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 45555444433211000 00112233344444455555555555555444221 3334444455555555555
Q ss_pred hHHHHHHHHHhCCCCCCHhHH--------------------------------------------HHHHHHHHhcCChHH
Q 011714 278 KGVGLLKLMKKRNCLPDKISY--------------------------------------------STLLNGLLKWGKIRP 313 (479)
Q Consensus 278 ~a~~~~~~~~~~~~~~~~~~~--------------------------------------------~~l~~~~~~~~~~~~ 313 (479)
+|+..++++.+.... +...+ ..+...+...|+.++
T Consensus 513 ~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 555555554432211 11111 223344556666666
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHH
Q 011714 314 AVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHL 393 (479)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 393 (479)
|..+++. .+.+......+...+. +.|++++|+..|+.+....+. +...+..++..+...|++++|++.+
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~-----~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQ-----QRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6666551 1223333334444443 679999999999999987665 6788999999999999999999999
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC--C---CHhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 394 HHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKI--P---SRTSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 394 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
+.+.+.. +.+..++..+..++...|++++|.++++++...... | +...+..+...+...|++++|+..|++++.
T Consensus 661 ~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 661 AKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9887642 224556777888889999999999999999875421 2 224566678889999999999999999875
Q ss_pred -CCCCCC
Q 011714 469 -QGVIPQ 474 (479)
Q Consensus 469 -~~~~p~ 474 (479)
.|+.|+
T Consensus 740 ~~~~~~~ 746 (1157)
T PRK11447 740 ASGITPT 746 (1157)
T ss_pred hcCCCCC
Confidence 355544
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=8.7e-22 Score=184.11 Aligned_cols=304 Identities=12% Similarity=0.066 Sum_probs=208.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh
Q 011714 91 LLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPN---VTTFTILVNSLCK 167 (479)
Q Consensus 91 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~ 167 (479)
....+...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445567788888888888888764 44566788888888888888888888888876432211 2456777888888
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHH
Q 011714 168 SGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPD----VYTYTAVMDGFCKVGRSNE 243 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~ 243 (479)
.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+...|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 888888888888887653 45667788888888888888888888888876543322 1234556667777888888
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 244 AMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 244 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
|...|+++.+... .+...+..+...+.+.|++++|.++++++...+......++..++.+|...|++++|...++++.+
T Consensus 199 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888776532 245566777777888888888888888877654322245566777777777777777777777766
Q ss_pred cCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc---CCCHHHHHHHHHHHHHcC
Q 011714 324 FGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGK---GKKTDEALIHLHHAIEMG 400 (479)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~ 400 (479)
. .|+...+..+...+. +.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.+++++.+.+
T Consensus 278 ~--~p~~~~~~~la~~~~-----~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 278 E--YPGADLLLALAQLLE-----EQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred h--CCCchHHHHHHHHHH-----HhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 4 344444444455443 557777777777766654 3455566655555543 446677777777777655
Q ss_pred CCCchH
Q 011714 401 HIPRTI 406 (479)
Q Consensus 401 ~~p~~~ 406 (479)
+.|++.
T Consensus 349 ~~~~p~ 354 (389)
T PRK11788 349 LKRKPR 354 (389)
T ss_pred HhCCCC
Confidence 555554
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.7e-21 Score=182.15 Aligned_cols=303 Identities=13% Similarity=0.074 Sum_probs=150.1
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCCH
Q 011714 130 YCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN---IQTYNCLLKGLCYVGRV 206 (479)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 206 (479)
+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344455555555555555442 22344455555555555555555555555544321111 12344444555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011714 207 EEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLM 286 (479)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 286 (479)
++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------ 178 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------ 178 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------------
Confidence 55555555554431 22344444455555555555555555555444322111000
Q ss_pred HhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCC
Q 011714 287 KKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVS 366 (479)
Q Consensus 287 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 366 (479)
....+..+...+...|++++|...++++.+... .+...+..+...+. ..|++++|.+.++++...++
T Consensus 179 -------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~-----~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 179 -------IAHFYCELAQQALARGDLDAARALLKKALAADP-QCVRASILLGDLAL-----AQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHCh
Confidence 011223334444445555555555555444321 11222222333332 34555555555555554332
Q ss_pred CCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 011714 367 VTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDML 446 (479)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 446 (479)
......++.++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..+
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l 321 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRL 321 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHH
Confidence 222334556666666667777777766666654 344445566666666677777777777666654 3555566655
Q ss_pred HHHHhc---cCCHhHHHHHHHHHHhCCCCCCC
Q 011714 447 ITKLDQ---LEKSYDACALYGAALKQGVIPQR 475 (479)
Q Consensus 447 ~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~ 475 (479)
+..+.. .|+..++..++++++++++.|++
T Consensus 322 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 322 LDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 555443 34666677777777666665554
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=5.3e-21 Score=171.44 Aligned_cols=370 Identities=15% Similarity=0.119 Sum_probs=306.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHH-HHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTT-FTILVN 163 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~ 163 (479)
.++|..+...+-..|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+.++. .|+... ...+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 5677888888889999999999999999874 556889999999999999999999999998875 455443 344555
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHH
Q 011714 164 SLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPD-VYTYTAVMDGFCKVGRSN 242 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~ 242 (479)
.+...|++++|...|.+..+.. +-=..+|..|.-.+-..|+...|++.|++..+. .|+ ...|..|...|...+.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 6667899999999998888763 223567888999999999999999999999875 444 678889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHH
Q 011714 243 EAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPD-KISYSTLLNGLLKWGKIRPAVSIFKEM 321 (479)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (479)
.|...|.+...... -....+..+...|...|..+-|++.+++..+.. |+ ...|+.+..++-..|+..+|.+.|.+.
T Consensus 270 ~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 RAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 99999998877632 256678888889999999999999999998864 44 578999999999999999999999999
Q ss_pred HHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 011714 322 VRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGH 401 (479)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 401 (479)
+..... .....+.+-..+. +.|.++.|..+|....+-.+. -....+.+...|-+.|++++|+..++++++ +
T Consensus 347 L~l~p~-hadam~NLgni~~-----E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I 417 (966)
T KOG4626|consen 347 LRLCPN-HADAMNNLGNIYR-----EQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--I 417 (966)
T ss_pred HHhCCc-cHHHHHHHHHHHH-----HhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--c
Confidence 876432 2334455555554 779999999999988875443 346789999999999999999999999887 5
Q ss_pred CCc-hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCC
Q 011714 402 IPR-TITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIPQR 475 (479)
Q Consensus 402 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 475 (479)
.|+ ...|+.+...|-..|+...|++.+.+.+..+ +--...++.|..+|...|+..+|+.-|+.+++ +.||.
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 676 5689999999999999999999999999875 33457889999999999999999999999988 45654
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=1.1e-19 Score=178.84 Aligned_cols=369 Identities=16% Similarity=0.076 Sum_probs=256.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011714 88 FNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCK 167 (479)
Q Consensus 88 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 167 (479)
+......+.+.|++++|+..|++..+. .|+...|..+..+|...|++++|++.++..++.. +.+...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 334455555566666666666665543 3455556666666666666666666666665543 2244555556666666
Q ss_pred cCChHHHHHHHHHHhhCC-----------------------------CCCCHHHHHHH----------------------
Q 011714 168 SGRLKEALEVLDQMGRIG-----------------------------CKPNIQTYNCL---------------------- 196 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~l---------------------- 196 (479)
.|++++|+..|......+ .+++...+..+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 666666654433221110 00000000000
Q ss_pred --------HHHH------HhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 011714 197 --------LKGL------CYVGRVEEAYEMLMNVKNDG-LKP-DVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNV 260 (479)
Q Consensus 197 --------~~~~------~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 260 (479)
+... ...+++++|.+.|+.....+ ..| ....+..+...+...|++++|+..+++.++.... ..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cH
Confidence 0000 12357889999999988764 223 4567888888899999999999999999886422 46
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 011714 261 VTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGL 340 (479)
Q Consensus 261 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (479)
..|..+...+...|++++|+..+++..+.. +.+...|..+...+...|++++|...|++.++.... +...+..+...+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHH
Confidence 688889999999999999999999998764 335788889999999999999999999999876422 334444444444
Q ss_pred hcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchH------HHHHHHHH
Q 011714 341 CMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTI------TFNNVIQA 414 (479)
Q Consensus 341 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~ 414 (479)
. ..|++++|...|+......+. +...++.+..++...|++++|++.|+++.......+.. .++..+..
T Consensus 444 ~-----~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 444 Y-----KEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred H-----HCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 3 679999999999999876544 67889999999999999999999999988753221111 12222233
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 415 LCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 415 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
+...|++++|+.++++..+.. +.+...+..++.++.+.|++++|++.|+++++.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445799999999999998875 345567889999999999999999999999875
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=6.5e-19 Score=172.72 Aligned_cols=330 Identities=11% Similarity=0.101 Sum_probs=267.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 011714 56 RFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKND 135 (479)
Q Consensus 56 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (479)
.++..+++|+..+|+.+++.+....+. +...+..++.+....|++++|+..|+++.+.. +.+...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 345677899999999999999877666 56666777788888999999999999999875 5667788999999999999
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011714 136 FFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMN 215 (479)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 215 (479)
+++|...++++.+.. +.+...+..+..++...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 999999999999763 4467889999999999999999999999887664 2334444333 347889999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhh----HHHHHHHHHhCCC
Q 011714 216 VKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMK----GVGLLKLMKKRNC 291 (479)
Q Consensus 216 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~ 291 (479)
+.+....++...+..+...+...|++++|+..++.+.+.... +...+..+...+...|++++ |+..+++..+...
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence 887654445555566678889999999999999999987533 67788889999999999986 8999999988643
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChh
Q 011714 292 LPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPG 371 (479)
Q Consensus 292 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 371 (479)
.+...+..+...+...|++++|...+++..+.... +......+...+. ..|++++|...|+.+...++. +..
T Consensus 282 -~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~-----~~G~~~eA~~~l~~al~~~P~-~~~ 353 (656)
T PRK15174 282 -DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALR-----QVGQYTAASDEFVQLAREKGV-TSK 353 (656)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHhCcc-chH
Confidence 36778999999999999999999999999876422 2333444444443 679999999999999876544 334
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 011714 372 TYGIVIRTLGKGKKTDEALIHLHHAIEM 399 (479)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 399 (479)
.+..+..++...|++++|+..|+++.+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4555677889999999999999998875
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=1.5e-18 Score=181.83 Aligned_cols=368 Identities=10% Similarity=-0.007 Sum_probs=276.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHHHH----------
Q 011714 90 DLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHP-NVTTF---------- 158 (479)
Q Consensus 90 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~---------- 158 (479)
.....+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+..... ....|
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 34567788999999999999998864 5578899999999999999999999999998764221 11122
Q ss_pred --HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011714 159 --TILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFC 236 (479)
Q Consensus 159 --~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 236 (479)
......+.+.|++++|.+.|++..+.. +.+...+..+...+...|++++|++.|++..+... .+...+..+...+.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 122456778999999999999999875 45677888899999999999999999999998643 24666777777764
Q ss_pred ccCCHHHHHHHHHHHHHCCCC--------CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc
Q 011714 237 KVGRSNEAMELLNEAIERGVT--------PNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKW 308 (479)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 308 (479)
.++.++|..+++.+...... .....+..+...+...|++++|+..+++..+.... +...+..+...+.+.
T Consensus 431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQA 508 (1157)
T ss_pred -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 46789999888765432100 01224556778888999999999999999887532 567788899999999
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhc---------------------------------------ccchhhc
Q 011714 309 GKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCM---------------------------------------KSWEEKD 349 (479)
Q Consensus 309 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------------------------------~~~~~~~ 349 (479)
|++++|...++++.+.... +......+...+.. ..+...|
T Consensus 509 G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 9999999999998865322 22111111111100 0011335
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHH
Q 011714 350 LLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLF 429 (479)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (479)
+.++|..+++. ...+...+..+...+.+.|++++|++.|+++.+.. +.+...+..++.++...|++++|+..++
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55555555541 12245567788899999999999999999999863 2357788999999999999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 430 LMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 430 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
.+.+.. +.+...+..+..++...|++++|.++++++++..
T Consensus 662 ~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 662 KLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 888754 3456677788889999999999999999998753
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=4.2e-19 Score=174.03 Aligned_cols=336 Identities=12% Similarity=0.033 Sum_probs=272.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS 164 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (479)
..-...++..+.+.|++++|+.+++...... +-+...+..++.++...|++++|...++.+.... |.+...+..+...
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~ 119 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASV 119 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3445567788889999999999999998764 4556677777788888999999999999999874 4577889999999
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 011714 165 LCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEA 244 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 244 (479)
+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHH
Confidence 999999999999999999864 456778889999999999999999999988766433 33344333 347889999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHH----HHHHHHH
Q 011714 245 MELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRP----AVSIFKE 320 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~ 320 (479)
...++.+++....++...+..+...+.+.|++++|+..++++..... .+...+..+...+...|++++ |...+++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 99999988764434455556667889999999999999999988753 367788889999999999986 8999999
Q ss_pred HHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 011714 321 MVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMG 400 (479)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 400 (479)
+.+... .+...+..+...+. ..|++++|...+++.....+. +...+..+..++...|++++|+..++++...
T Consensus 276 Al~l~P-~~~~a~~~lg~~l~-----~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~- 347 (656)
T PRK15174 276 ALQFNS-DNVRIVTLYADALI-----RTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE- 347 (656)
T ss_pred HHhhCC-CCHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 987532 24455555555554 679999999999999987655 5677888999999999999999999999875
Q ss_pred CCCch-HHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 401 HIPRT-ITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 401 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
.|+. ..+..+..++...|+.++|+..|++..+..
T Consensus 348 -~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 348 -KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred -CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3443 334445678899999999999999998875
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=6.7e-20 Score=164.50 Aligned_cols=403 Identities=14% Similarity=0.119 Sum_probs=319.3
Q ss_pred HHHHHHh-cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhc
Q 011714 56 RFVDRIK-ASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSW-TFSIMIRCYCNK 133 (479)
Q Consensus 56 ~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 133 (479)
.+-+.++ .|.+++|+.+++.+.+.... .+..|..+..++...|+.+.|.+.|.+..+. .|+.. ..+.+...+-..
T Consensus 121 n~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~ 197 (966)
T KOG4626|consen 121 NLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAE 197 (966)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhh
Confidence 3445554 46689999999999987655 7899999999999999999999999999976 45543 344555666678
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011714 134 NDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEML 213 (479)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 213 (479)
|++.+|..-|.+.++.. +--...|..|...+-.+|+...|++.|++..+.. +--..+|-.|...|...+.+++|+..|
T Consensus 198 Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred cccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 99999999999998763 3346789999999999999999999999998874 333678999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 011714 214 MNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLP 293 (479)
Q Consensus 214 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 293 (479)
.+...... -....+..+.-.|...|.++-|+..|++.++.... -...|+.|..++-..|+..+|++.+.+...... .
T Consensus 276 ~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~ 352 (966)
T KOG4626|consen 276 LRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-N 352 (966)
T ss_pred HHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-c
Confidence 99887532 24677888888899999999999999999987433 456899999999999999999999999988642 2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhh
Q 011714 294 DKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDE-RMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGT 372 (479)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 372 (479)
.....+.|...+...|.+++|..+|....+. .|.- ...+.+...| .++|++++|...|++..+-.+. -...
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~-----kqqgnl~~Ai~~YkealrI~P~-fAda 424 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIY-----KQQGNLDDAIMCYKEALRIKPT-FADA 424 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHH-----HhcccHHHHHHHHHHHHhcCch-HHHH
Confidence 4678899999999999999999999998874 3433 2333344444 3789999999999998875443 3468
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIEMGHIPR-TITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLD 451 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (479)
|+.+...|-..|+.+.|+..+.+++.. .|. ...++.|...|-..|+..+|+.-++...+.. +.-+..|-.++.++.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk-PDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK-PDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC-CCCchhhhHHHHHHH
Confidence 999999999999999999999998874 555 5678999999999999999999999999875 333456666665542
Q ss_pred c---cC----CHhHHHHHHHHHHhCCCCCCCCC
Q 011714 452 Q---LE----KSYDACALYGAALKQGVIPQRKP 477 (479)
Q Consensus 452 ~---~g----~~~~A~~~~~~~~~~~~~p~~~~ 477 (479)
- -- +.++..++.++-+++..-|+.++
T Consensus 502 ~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP 534 (966)
T KOG4626|consen 502 IVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHP 534 (966)
T ss_pred HHhcccchHHHHHHHHHHHHHHHhhhcCCccCc
Confidence 2 12 23444455555554445555544
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=4.9e-18 Score=170.17 Aligned_cols=403 Identities=11% Similarity=0.023 Sum_probs=303.7
Q ss_pred hHHHHHHHHH-HhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 011714 51 SLQAQRFVDR-IKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRC 129 (479)
Q Consensus 51 ~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (479)
+..+..++.. .-.|+..+|+.++....... +.+...+..+...+...|++++|..+|++..+.. +.+...+..++.+
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~ 92 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4455555543 45788999999999987633 3466779999999999999999999999988764 5567788889999
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011714 130 YCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEA 209 (479)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 209 (479)
+...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..++|
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHH
Confidence 999999999999999999873 45666 8889999999999999999999999875 44666777788888899999999
Q ss_pred HHHHHHHHHCCCCCCH------HHHHHHHHHHHc-----cCCH---HHHHHHHHHHHHC-CCCCCHh-hH----HHHHHH
Q 011714 210 YEMLMNVKNDGLKPDV------YTYTAVMDGFCK-----VGRS---NEAMELLNEAIER-GVTPNVV-TF----NTLFNG 269 (479)
Q Consensus 210 ~~~~~~~~~~~~~~~~------~~~~~li~~~~~-----~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~ 269 (479)
++.++.... .|+. .....++..... .+++ ++|+..++.+.+. ...|+.. .+ ...+..
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 999986654 2221 112222332221 2234 7788888888754 2223221 11 111334
Q ss_pred HHhcCChhhHHHHHHHHHhCCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---CHHHHHHHHHHHhcccc
Q 011714 270 YCKEGTPMKGVGLLKLMKKRNCL-PDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEV---DERMMNSLLRGLCMKSW 345 (479)
Q Consensus 270 ~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 345 (479)
+...|++++|+..|+.+.+.+.. |+. ....+..++...|++++|...|+++.+..... .......+..++.
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~---- 321 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL---- 321 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH----
Confidence 56779999999999999887632 332 22335778999999999999999988653221 1223334444443
Q ss_pred hhhccHHHHHHHHHHHHhCCCC-----------CC---hhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHH
Q 011714 346 EEKDLLEDAYQVFEKMTKKVSV-----------TD---PGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNV 411 (479)
Q Consensus 346 ~~~~~~~~a~~~~~~~~~~~~~-----------~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 411 (479)
+.|++++|..+++.+....+. |+ ...+..+...+...|++++|++.++++.... +.+...+..+
T Consensus 322 -~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~l 399 (765)
T PRK10049 322 -ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDY 399 (765)
T ss_pred -hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 679999999999998876431 22 1245667788999999999999999998763 3357788899
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 412 IQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
...+...|++++|++.+++..+.. +.+...+..++..+.+.|++++|..+++++++.
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999876 446677778888999999999999999999884
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=3.9e-18 Score=167.82 Aligned_cols=364 Identities=14% Similarity=0.049 Sum_probs=279.6
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 011714 59 DRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFE 138 (479)
Q Consensus 59 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 138 (479)
...+.+++++|+..|+...+.. |+...|..+..++.+.|++++|+..++...+.. +.+...+..+..+|...|++++
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3457799999999999988654 567789999999999999999999999999875 5567899999999999999999
Q ss_pred HHHHHHHHHhCCC-----------------------------CCCHHHHHHH----------------------------
Q 011714 139 ARKVIDCMFDNGY-----------------------------HPNVTTFTIL---------------------------- 161 (479)
Q Consensus 139 a~~~~~~~~~~~~-----------------------------~~~~~~~~~l---------------------------- 161 (479)
|...+..+...+. +.+...+..+
T Consensus 213 A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGN 292 (615)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccccc
Confidence 9876654432110 0110000000
Q ss_pred --HHHH------HhcCChHHHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011714 162 --VNSL------CKSGRLKEALEVLDQMGRIG-C-KPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAV 231 (479)
Q Consensus 162 --i~~~------~~~g~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 231 (479)
+... ...+++++|.+.|++..+.+ . +.....|..+...+...|++++|+..+++...... -....|..+
T Consensus 293 ~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~l 371 (615)
T TIGR00990 293 GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKR 371 (615)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHH
Confidence 0000 11357889999999988764 2 33456788888999999999999999999987632 246688888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCh
Q 011714 232 MDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKI 311 (479)
Q Consensus 232 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (479)
..++...|++++|...|+++++... .+...|..+...+...|++++|+..|++..+... .+...+..+..++.+.|++
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999988743 3678899999999999999999999999988753 3567788888999999999
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChh------hHHHHHHHHhcCCC
Q 011714 312 RPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPG------TYGIVIRTLGKGKK 385 (479)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~ 385 (479)
++|...+++.++.. +.+...+..+...+. ..|++++|...|++.....+..+.. .++..+..+...|+
T Consensus 450 ~eA~~~~~~al~~~-P~~~~~~~~lg~~~~-----~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 450 ASSMATFRRCKKNF-PEAPDVYNYYGELLL-----DQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHH-----HccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 99999999988753 223455555655554 6799999999999988765432221 12222333445799
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 386 TDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 386 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
+++|.++++++..... .+...+..+..++...|++++|+.+|++..+..
T Consensus 524 ~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 524 FIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 9999999999887642 244578889999999999999999999998764
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=3.1e-17 Score=161.41 Aligned_cols=405 Identities=12% Similarity=0.039 Sum_probs=302.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 011714 52 LQAQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYC 131 (479)
Q Consensus 52 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (479)
......+...++|+...|+..|+...+.++.-....+ .++..+...|+.++|+..+++..... +........+...+.
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~ 113 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHH
Confidence 4455667778999999999999999877655222344 88899999999999999999998211 223333344466888
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011714 132 NKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYE 211 (479)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 211 (479)
..|++++|.++|+++.+.. +-+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++
T Consensus 114 ~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 9999999999999999875 446778888889999999999999999999877 5666666555555555677767999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH----------------------------------------------
Q 011714 212 MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAM---------------------------------------------- 245 (479)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~---------------------------------------------- 245 (479)
.++++.+.... +...+..+..++.+.|-...|.
T Consensus 191 ~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 191 ASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 99999987422 4555555555555444333332
Q ss_pred --HHHHHHHHC-CCCCCH-hhH----HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 011714 246 --ELLNEAIER-GVTPNV-VTF----NTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSI 317 (479)
Q Consensus 246 --~~~~~~~~~-~~~~~~-~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 317 (479)
.-++.+... +..|.. ..| .-.+-++...|++.++++.++.+...+.+....+-..+..+|...+++++|..+
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l 349 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI 349 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 223333221 111221 111 234557788999999999999999888765667888999999999999999999
Q ss_pred HHHHHHcCC-----CcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCC-----------CCCh---hhHHHHHH
Q 011714 318 FKEMVRFGF-----EVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVS-----------VTDP---GTYGIVIR 378 (479)
Q Consensus 318 ~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~ 378 (479)
++.+..... .++......|.-++. +.+++++|..+++.+.+..+ .|++ ..+..++.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~L~yA~l-----d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 350 LSSLYYSDGKTFRNSDDLLDADDLYYSLN-----ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHhhccccccCCCcchHHHHHHHHHHH-----hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 999876431 223333456666765 78999999999999987433 1222 23445677
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhH
Q 011714 379 TLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYD 458 (479)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 458 (479)
.+...|+..+|.+.++++.... +-|......+...+...|.+.+|...++...... +.+..+....+.++...|++++
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHH
Confidence 8899999999999999998763 3478888999999999999999999997777664 5567788888899999999999
Q ss_pred HHHHHHHHHhC
Q 011714 459 ACALYGAALKQ 469 (479)
Q Consensus 459 A~~~~~~~~~~ 469 (479)
|..+.++.++.
T Consensus 503 A~~~~~~l~~~ 513 (822)
T PRK14574 503 MELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHhh
Confidence 99999888763
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=1.7e-17 Score=166.24 Aligned_cols=377 Identities=12% Similarity=0.035 Sum_probs=284.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 011714 82 NWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTIL 161 (479)
Q Consensus 82 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (479)
..+.....-.+......|+.++|++++.+..... +.+...+..+...+.+.|++++|.+++++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3466667788889999999999999999998633 5666679999999999999999999999998763 4567788889
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 011714 162 VNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 241 (479)
Q Consensus 162 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 241 (479)
..++...|++++|+..+++..+.. +.+.. +..+..++...|+.++|+..++++.+.... +...+..+..++...+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCh
Confidence 999999999999999999998874 44566 888999999999999999999999987533 566667788888899999
Q ss_pred HHHHHHHHHHHHCCCCCCH------hhHHHHHHHHH-----hcCCh---hhHHHHHHHHHhC-CCCCCHh-HH----HHH
Q 011714 242 NEAMELLNEAIERGVTPNV------VTFNTLFNGYC-----KEGTP---MKGVGLLKLMKKR-NCLPDKI-SY----STL 301 (479)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l 301 (479)
++|+..++.+.. .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+ ...
T Consensus 167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 999999876654 2221 11122222222 22234 7788888888754 2222221 11 111
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCC---ChhhHHHHH
Q 011714 302 LNGLLKWGKIRPAVSIFKEMVRFGFE-VDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVT---DPGTYGIVI 377 (479)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~ 377 (479)
+..+...|++++|...|+.+.+.+.. |+.... .+...+. ..|++++|...|+.+....+.. .......+.
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~-~la~~yl-----~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPWAQR-WVASAYL-----KLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHH-HHHHHHH-----hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 34556779999999999999877532 332221 1333443 6699999999999987654331 123466677
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCC-----------CCc---hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhH
Q 011714 378 RTLGKGKKTDEALIHLHHAIEMGH-----------IPR---TITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSY 443 (479)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 443 (479)
.++...|++++|..+++.+.+... .|+ ...+..+...+...|++++|+.+++++.... +.+...+
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~ 396 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLR 396 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 788999999999999999887521 123 1245567778889999999999999999875 5578889
Q ss_pred HHHHHHHhccCCHhHHHHHHHHHHhCCCCCCC
Q 011714 444 DMLITKLDQLEKSYDACALYGAALKQGVIPQR 475 (479)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 475 (479)
..++..+...|++++|++.++++++.. |+.
T Consensus 397 ~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~ 426 (765)
T PRK10049 397 IDYASVLQARGWPRAAENELKKAEVLE--PRN 426 (765)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhC--CCC
Confidence 999999999999999999999998854 664
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=7.2e-16 Score=132.97 Aligned_cols=408 Identities=16% Similarity=0.194 Sum_probs=284.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HH-HHHHHHHHHHhCC--------------
Q 011714 53 QAQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNE--QE-TAVKFFSEASSYG-------------- 115 (479)
Q Consensus 53 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~-~A~~~~~~~~~~~-------------- 115 (479)
.-..++..+.++.++++.-+|+.|...|++.+...--.|++..+-.+. +. .-++.|-.|...|
T Consensus 118 ~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd 197 (625)
T KOG4422|consen 118 TENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD 197 (625)
T ss_pred chhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH
Confidence 445778889999999999999999999988888776666664443222 11 1122222222211
Q ss_pred -----CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH
Q 011714 116 -----LAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNI 190 (479)
Q Consensus 116 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 190 (479)
.+.+..+|..+|.++|+-...+.|.+++++-.....+.+..+||.+|.+-.-. ...+++.+|....+.||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCch
Confidence 24567789999999999999999999999998777788999999998764432 227888899988889999
Q ss_pred HHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHH----CCCC----
Q 011714 191 QTYNCLLKGLCYVGRVEE----AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE-AMELLNEAIE----RGVT---- 257 (479)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~----~~~~---- 257 (479)
.|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. +...
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 999999999999998765 56778889999999999999999999998887644 4444444433 1121
Q ss_pred CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC----CCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH
Q 011714 258 PNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN----CLPD---KISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDE 330 (479)
Q Consensus 258 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 330 (479)
.|...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....+.....+.....|+.|.-.-+-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 234456777888888888888887766654321 2233 234666777778888888888889988877778888
Q ss_pred HHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC-C--------HHH-----HHHHHH--
Q 011714 331 RMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGK-K--------TDE-----ALIHLH-- 394 (479)
Q Consensus 331 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~--------~~~-----A~~~~~-- 394 (479)
.+...++++.. -.+.++-..++|..+...|..-+.....-++..+++.+ . +.. |..+++
T Consensus 434 ~~m~~~lrA~~-----v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~ 508 (625)
T KOG4422|consen 434 QTMIHLLRALD-----VANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAY 508 (625)
T ss_pred hhHHHHHHHHh-----hcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 88888888764 55777777788877776654433444444444444443 1 111 111111
Q ss_pred -----HHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC----CCCHhhHHHHHHHHhccCCHhHHHHHHHH
Q 011714 395 -----HAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAK----IPSRTSYDMLITKLDQLEKSYDACALYGA 465 (479)
Q Consensus 395 -----~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 465 (479)
++.. ........+..+-.+.+.|..++|.+++..+.+.+- .|.......+++.-.+......|..+++-
T Consensus 509 e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~ 586 (625)
T KOG4422|consen 509 ESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQL 586 (625)
T ss_pred HhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1222 223445567777778899999999999998865543 23333344566666777889999999998
Q ss_pred HHhCCC
Q 011714 466 ALKQGV 471 (479)
Q Consensus 466 ~~~~~~ 471 (479)
|...+.
T Consensus 587 a~~~n~ 592 (625)
T KOG4422|consen 587 ASAFNL 592 (625)
T ss_pred HHHcCc
Confidence 877553
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.82 E-value=7.4e-15 Score=147.81 Aligned_cols=83 Identities=10% Similarity=0.068 Sum_probs=64.6
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 011714 61 IKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEAR 140 (479)
Q Consensus 61 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (479)
...|+.++|+..|+...+.++. +..++..|...|...|++++|+..+++..+.. |+...|..++... ++.++|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHH
Confidence 3458899999999999988776 68999999999999999999999999998764 4433333333222 7777888
Q ss_pred HHHHHHHhC
Q 011714 141 KVIDCMFDN 149 (479)
Q Consensus 141 ~~~~~~~~~ 149 (479)
.+++++...
T Consensus 129 ~~ye~l~~~ 137 (987)
T PRK09782 129 TTVEELLAQ 137 (987)
T ss_pred HHHHHHHHh
Confidence 888887754
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=1.9e-14 Score=141.94 Aligned_cols=371 Identities=13% Similarity=0.063 Sum_probs=275.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011714 89 NDLLMALVMLNEQETAVKFFSEASSYGLAPNS--WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLC 166 (479)
Q Consensus 89 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (479)
..-+-...+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++.... -+........+...+.
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~ 113 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHH
Confidence 344445668999999999999999764 443 244 8888888999999999999999832 1223344444467888
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 011714 167 KSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAME 246 (479)
Q Consensus 167 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 246 (479)
..|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++
T Consensus 114 ~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 9999999999999999875 445777788889999999999999999999876 4555566555555555677767999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHH-------------------------------------------
Q 011714 247 LLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLL------------------------------------------- 283 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~------------------------------------------- 283 (479)
.++++.+.... +...+..+..++.+.|-...|.++.
T Consensus 191 ~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 191 ASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 99999987433 5666666666666665544444333
Q ss_pred -----HHHHhC-CCCCCH-----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHH
Q 011714 284 -----KLMKKR-NCLPDK-----ISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLE 352 (479)
Q Consensus 284 -----~~~~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 352 (479)
+.+... +..|.. ....-.+-++...|++.++++.|+.+...+.+....+...+..+|. ..+.++
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl-----~~~~P~ 344 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI-----DRRLPE 344 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH-----hcCCcH
Confidence 222221 111221 1222345577888999999999999998886656677888888887 669999
Q ss_pred HHHHHHHHHHhCCC-----CCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------CCch---HHHHHHHH
Q 011714 353 DAYQVFEKMTKKVS-----VTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGH-----------IPRT---ITFNNVIQ 413 (479)
Q Consensus 353 ~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~~---~~~~~l~~ 413 (479)
+|..+|+.+..... .++......|.-++...+++++|..+++++.+... .|++ ..+..++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 99999999876432 12233357788999999999999999999987321 1222 23345567
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCC
Q 011714 414 ALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIPQR 475 (479)
Q Consensus 414 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 475 (479)
.+...|+..+|++.++++.... +-|......+...+...|.+.+|.+.++.+... .|+.
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~ 483 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRS 483 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCcc
Confidence 7889999999999999998775 668899999999999999999999999877664 5654
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=7.8e-15 Score=126.68 Aligned_cols=349 Identities=15% Similarity=0.202 Sum_probs=262.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 011714 82 NWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTIL 161 (479)
Q Consensus 82 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (479)
+.+..++..+|.++++-...+.|.+++++......+.+..+||.+|.+-.-.. ..++..+|......||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHH
Confidence 34778999999999999999999999999887767899999999997654332 27889999999999999999999
Q ss_pred HHHHHhcCChHH----HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHC----CCC---C-CHHHH
Q 011714 162 VNSLCKSGRLKE----ALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEE-AYEMLMNVKND----GLK---P-DVYTY 228 (479)
Q Consensus 162 i~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~~---~-~~~~~ 228 (479)
+.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++... .++ | |...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998765 56788899999999999999999999999988754 55555555432 222 2 45567
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC---HhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHH
Q 011714 229 TAVMDGFCKVGRSNEAMELLNEAIER----GVTPN---VVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTL 301 (479)
Q Consensus 229 ~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 301 (479)
...+..|.+..+.+-|.++..-+... -+.|+ ..-|..+....|+....+.....|+.|.-.-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 78888999999999999987655432 12232 234566778888999999999999999988888999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccc----hhhccHHH-----HHHHH-------HHHHhCC
Q 011714 302 LNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSW----EEKDLLED-----AYQVF-------EKMTKKV 365 (479)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~-----a~~~~-------~~~~~~~ 365 (479)
+++....|.++-..++|.++...|..-......-++..++.... ....++.. |..++ .++.+..
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~ 519 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD 519 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc
Confidence 99999999999999999999887755555444444444442110 00011111 11111 2233332
Q ss_pred CCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC----CchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 011714 366 SVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHI----PRTITFNNVIQALCGEGKIDKALLLLFLMYEHAK 436 (479)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 436 (479)
......+.++-.+.+.|+.++|.+++..+.+.+-+ |......-++..-...+++..|+.+++-|...+.
T Consensus 520 --~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 520 --WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred --CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 34566888888999999999999999998655322 3333344666777888999999999999987653
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=3.6e-14 Score=134.63 Aligned_cols=418 Identities=15% Similarity=0.067 Sum_probs=267.3
Q ss_pred CCCcchHHHHHHHHH--HhcCChhhHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--
Q 011714 46 KENPRSLQAQRFVDR--IKASPLKERIDIFDSIKKDGTN--WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN-- 119 (479)
Q Consensus 46 ~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-- 119 (479)
.+++..+.+...+.. ...++.+.+..+.+.+...... .-...|..+.+++-..|++++|...|-+..+.. ++
T Consensus 264 ~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~ 341 (1018)
T KOG2002|consen 264 KENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNF 341 (1018)
T ss_pred hhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCc
Confidence 444545555555443 3567788888887766544322 234568888888888888888888888877653 33
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHhhCCCCCCHHHHHH
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSG----RLKEALEVLDQMGRIGCKPNIQTYNC 195 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (479)
...+..+.+.+++.|+++.+...|+.+.... +-+..+...|...|...+ ..+.|..++.+..+.- +.|...|-.
T Consensus 342 ~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~ 419 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLE 419 (1018)
T ss_pred cccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHH
Confidence 3445567788888888888888888887763 445667777777776654 4456666665555443 445566666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCC------Hhh
Q 011714 196 LLKGLCYVGRVEEAYEMLMNVK----NDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIER---GVTPN------VVT 262 (479)
Q Consensus 196 l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~------~~~ 262 (479)
+...+....-+.. +.+|.... ..+..+.....|.+...+...|++++|...|...... ...++ +.+
T Consensus 420 laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~ 498 (1018)
T KOG2002|consen 420 LAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTL 498 (1018)
T ss_pred HHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHH
Confidence 6555544433333 44444332 2333455666666666666666666666666665543 11111 112
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCC---------------------------------CCCCHhHHHHHHHHHHhcC
Q 011714 263 FNTLFNGYCKEGTPMKGVGLLKLMKKRN---------------------------------CLPDKISYSTLLNGLLKWG 309 (479)
Q Consensus 263 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~~~~~ 309 (479)
-..+...+-..++.+.|.+.|..+.+.. ...++..+..+...+.+..
T Consensus 499 ~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 499 KYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhh
Confidence 2233334444445555555555444431 0112233333333444444
Q ss_pred ChHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHhccc-------chhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 011714 310 KIRPAVSIFKEMVRFG-FEVDERMMNSLLRGLCMKS-------WEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLG 381 (479)
Q Consensus 310 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (479)
++..|..-|..+...- ..+|.....+|-..+.... ....+..+.|+++|.++.+.++. |...-|.+..+++
T Consensus 579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA 657 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLA 657 (1018)
T ss_pred hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhh
Confidence 4444444444333221 1234444444444332111 12456789999999999988776 7788899999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHhccCCHhHHH
Q 011714 382 KGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAK-IPSRTSYDMLITKLDQLEKSYDAC 460 (479)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 460 (479)
..|++.+|..+|.+..+... -...+|..+..+|..+|++..|++.|+...+... ..+......|.+++.+.|++.+|.
T Consensus 658 ~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred hccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999988643 3556899999999999999999999999887644 557788999999999999999999
Q ss_pred HHHHHHHhCC
Q 011714 461 ALYGAALKQG 470 (479)
Q Consensus 461 ~~~~~~~~~~ 470 (479)
+....++...
T Consensus 737 ~~ll~a~~~~ 746 (1018)
T KOG2002|consen 737 EALLKARHLA 746 (1018)
T ss_pred HHHHHHHHhC
Confidence 9999887754
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.75 E-value=2.3e-13 Score=137.19 Aligned_cols=355 Identities=10% Similarity=-0.040 Sum_probs=235.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC---hH
Q 011714 98 LNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDN--GYHPNVTTFTILVNSLCKSGR---LK 172 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~---~~ 172 (479)
.+...++.+.+..|.+.. +-+......+.-...+.|+.++|.++++..... +..++......|+..|.+.+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 467777777777777652 346666666666777888888888888888752 122344455577777777665 23
Q ss_pred HHHHH-------------------------HHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011714 173 EALEV-------------------------LDQMGRIGCKP--NIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDV 225 (479)
Q Consensus 173 ~a~~~-------------------------~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 225 (479)
++..+ +...... .++ +...|..+..++.. ++.++|+..+.+.... .|+.
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~ 509 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDA 509 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCch
Confidence 33222 1111111 133 56677777777665 7777788877776654 3454
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 011714 226 YTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGL 305 (479)
Q Consensus 226 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 305 (479)
.....+...+...|++++|...|+.+... +|+...+..+...+.+.|++++|...+++..+.+ +.+...+..+....
T Consensus 510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l 586 (987)
T PRK09782 510 WQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQR 586 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHH
Confidence 44444455556788888888888877554 3344445666777788888888888888887764 22333333344444
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCC
Q 011714 306 LKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKK 385 (479)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (479)
...|++++|...+++.++. .|+...+..+...+. +.|+.++|...++......+. +...++.+..++...|+
T Consensus 587 ~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~-----~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~ 658 (987)
T PRK09782 587 YIPGQPELALNDLTRSLNI--APSANAYVARATIYR-----QRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGD 658 (987)
T ss_pred HhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCC
Confidence 5568888888888888765 345555555555554 668888888888888877655 66777788888888888
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHH
Q 011714 386 TDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGA 465 (479)
Q Consensus 386 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 465 (479)
+++|+..++++.+... -+...+..+..++...|++++|+..+++..+.. +-+..+.........+..+++.|.+-+++
T Consensus 659 ~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 659 IAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 8888888888877532 256677788888888888888888888888764 23445556666677777777777777777
Q ss_pred HHhCC
Q 011714 466 ALKQG 470 (479)
Q Consensus 466 ~~~~~ 470 (479)
....+
T Consensus 737 ~~~~~ 741 (987)
T PRK09782 737 RWTFS 741 (987)
T ss_pred HhhcC
Confidence 65543
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.2e-13 Score=131.21 Aligned_cols=393 Identities=14% Similarity=0.066 Sum_probs=272.6
Q ss_pred hhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChhhHHHHH
Q 011714 66 LKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGL--APNSWTFSIMIRCYCNKNDFFEARKVI 143 (479)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (479)
...++.++...-..+.. ++...+.|...+.-.|+++.++.+...+..... ..-...|..+.++|-..|++++|...|
T Consensus 252 ~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 45566666655544443 778889999999999999999999999886531 123456888999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHC
Q 011714 144 DCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVG----RVEEAYEMLMNVKND 219 (479)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~ 219 (479)
.+..+..-.-....+--|...+.+.|+++.+...|+...+.. +.+..+...|...|...+ ..+.|..++.+..+.
T Consensus 331 ~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 331 MESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred HHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 988876422223445568889999999999999999998764 445677777777777775 567788888887766
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH----HCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC---CCC
Q 011714 220 GLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAI----ERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR---NCL 292 (479)
Q Consensus 220 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~ 292 (479)
. +.|...|-.+...+-...-+ .++.+|..+. ..+..+.....|.+...+...|++.+|...|+..... ...
T Consensus 410 ~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 410 T-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred c-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 4 44778887777766655443 3366666554 3455567888999999999999999999999988655 112
Q ss_pred C------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHH-HHHHHHHHhcccchhhccHHHHHHHHHHHHhCC
Q 011714 293 P------DKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERM-MNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKV 365 (479)
Q Consensus 293 ~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 365 (479)
+ +..+--.+....-..++.+.|.+.|+.+++. .|.-.. +..+. +.. ...+...+|...++.....+
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~-~ma----~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLG-CMA----RDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhh-HHH----HhccCcHHHHHHHHHHHhcc
Confidence 2 2223334555666677888888888888764 222211 11111 111 12344444444444433221
Q ss_pred C-----------------------------------CCChhhHHHHHHHHh------------cCCCHHHHHHHHHHHHH
Q 011714 366 S-----------------------------------VTDPGTYGIVIRTLG------------KGKKTDEALIHLHHAIE 398 (479)
Q Consensus 366 ~-----------------------------------~~~~~~~~~l~~~~~------------~~g~~~~A~~~~~~~~~ 398 (479)
. .+|..+.-.|...|. ..+..++|+++|.+++.
T Consensus 561 ~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 561 SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 1 123333333334332 22346778888888877
Q ss_pred cCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCC
Q 011714 399 MGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGV 471 (479)
Q Consensus 399 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 471 (479)
... -|...-+.+.-+++..|++.+|+.+|.+..+.. .....+|-.+.++|..+|++-.|++.|+..+++-.
T Consensus 641 ~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 641 NDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred cCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 532 256666777788889999999999999999875 34678899999999999999999999999888644
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.74 E-value=3.7e-13 Score=127.03 Aligned_cols=372 Identities=13% Similarity=0.057 Sum_probs=263.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSL 165 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (479)
...-.....+...|+.++|.+++.++++.. +.+...|..|...|-+.|+.+++...+-..-... +-|...|..+....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls 217 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 333334444455688888888888888775 6677788888888888888888887766554433 44678888888888
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHccCCH
Q 011714 166 CKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTY----TAVMDGFCKVGRS 241 (479)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~~~~ 241 (479)
.+.|.+++|.-.|.+.++.. +++...+---...|-+.|+...|...|.++.....+.|..-+ ...+..+...++-
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 88888888888888888775 556666666777788888888888888888876443232222 3335556667777
Q ss_pred HHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC---------------------------CCC
Q 011714 242 NEAMELLNEAIER-GVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN---------------------------CLP 293 (479)
Q Consensus 242 ~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------------------------~~~ 293 (479)
+.|.+.++..... +-..+...++.++..+.+...++.+......+.... ..+
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 8888888777662 223355567888888888888888888777765511 112
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChh
Q 011714 294 DKISYSTLLNGLLKWGKIRPAVSIFKEMVRFG--FEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPG 371 (479)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 371 (479)
+... .-+.-++.+.+..+....+...+.... +..+...+.-+..++. +.|.+.+|+.+|..+......-+..
T Consensus 377 ~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~-----~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 377 DLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALT-----NIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred cchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHH-----hcccHHHHHHHHHHHhcCccccchh
Confidence 2222 122234445555555556666666655 4445667778888886 7799999999999998776665677
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-chHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC--------CCCCHhh
Q 011714 372 TYGIVIRTLGKGKKTDEALIHLHHAIEMGHIP-RTITFNNVIQALCGEGKIDKALLLLFLMYEHA--------KIPSRTS 442 (479)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~ 442 (479)
.|-.+..+|...|.+++|.+.++.++.. .| +...-..|...+.+.|+.++|.+.++.+..-+ ..|+...
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri 528 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRI 528 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHH
Confidence 8999999999999999999999998875 33 34556667777889999999999998865322 3556666
Q ss_pred HHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 443 YDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
.......|.+.|+.++=......|+.
T Consensus 529 ~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 529 LAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 66777788888988875555444443
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=2e-13 Score=128.73 Aligned_cols=330 Identities=12% Similarity=0.054 Sum_probs=254.7
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 011714 128 RCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVE 207 (479)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 207 (479)
......|++++|.+++.++++.. +.+...|..|..+|-..|+.+++...+-...... +.|...|..+.....+.|+++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 33444599999999999999875 5688999999999999999999998887666654 557789999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhh----HHHHHHHHHhcCChhhHHHHH
Q 011714 208 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVT----FNTLFNGYCKEGTPMKGVGLL 283 (479)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~ 283 (479)
.|.-+|.+..+.. +++...+---+..|-+.|+...|...|.++.....+.|..- -..++..+...++.+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999875 34666666678889999999999999999988743222222 233456677778779999999
Q ss_pred HHHHhCC-CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------------------------CCcCHHHHHH
Q 011714 284 KLMKKRN-CLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFG---------------------------FEVDERMMNS 335 (479)
Q Consensus 284 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~ 335 (479)
+.....+ -..+...++.++..+.+...++.+........... ..++..++..
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 8887632 23355678888888999999999888877766521 2223333222
Q ss_pred HHHHHhcccchhhccHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 011714 336 LLRGLCMKSWEEKDLLEDAYQVFEKMTKKV--SVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQ 413 (479)
Q Consensus 336 l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 413 (479)
.+... +.+..+....+...+...+ +.-+...|.-+..+|...|++.+|+.++..+.......+...|..+..
T Consensus 384 ~icL~------~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 384 MICLV------HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hhhhh------cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 22222 2233344444444444444 333557889999999999999999999999998766667889999999
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHH
Q 011714 414 ALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAAL 467 (479)
Q Consensus 414 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (479)
+|...|.+++|++.+++.+... +.+...-..|...+.++|+.++|.+.++.+.
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999875 5566777888889999999999999999875
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=1e-13 Score=120.87 Aligned_cols=376 Identities=13% Similarity=0.089 Sum_probs=233.7
Q ss_pred hcCChhhHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 011714 62 KASPLKERIDIFDSIKKDGTNW----SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFF 137 (479)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 137 (479)
+...+.+|+++|+.....-+.. ...+.+.+.-.+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+-+
T Consensus 249 kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~e 326 (840)
T KOG2003|consen 249 KKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAE 326 (840)
T ss_pred ehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHH
Confidence 4455677777776655433222 2345566666777889999999999988765 678776666666677788888
Q ss_pred hHHHHHHHHHhCCCC------------CCHHHHHHHH-----HHHHhcC--ChHHHHHHHHHHhhCCCCCCHHH---H--
Q 011714 138 EARKVIDCMFDNGYH------------PNVTTFTILV-----NSLCKSG--RLKEALEVLDQMGRIGCKPNIQT---Y-- 193 (479)
Q Consensus 138 ~a~~~~~~~~~~~~~------------~~~~~~~~li-----~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~---~-- 193 (479)
+..+.|.+|+..... |+....+--+ .-+-+.+ +.++++-.--+++.--+.|+-.. |
T Consensus 327 kmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcl 406 (840)
T KOG2003|consen 327 KMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCL 406 (840)
T ss_pred HHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHH
Confidence 888888888753222 2222222211 1111111 11222211111111111222100 0
Q ss_pred ----------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-------------------------
Q 011714 194 ----------------NCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVM------------------------- 232 (479)
Q Consensus 194 ----------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li------------------------- 232 (479)
-.-..-+.+.|+++.|+++++-+.+..-+.....-+.|-
T Consensus 407 e~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d 486 (840)
T KOG2003|consen 407 ESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID 486 (840)
T ss_pred HHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc
Confidence 011235778888888888887765542221111111110
Q ss_pred -----------HHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHH---HHHHHhcCChhhHHHHHHHHHhCCCCCCHhHH
Q 011714 233 -----------DGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTL---FNGYCKEGTPMKGVGLLKLMKKRNCLPDKISY 298 (479)
Q Consensus 233 -----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 298 (479)
......|++++|.+.|++.+.. |..+-.+| .-.+-..|+.++|++.|-++..- +..+....
T Consensus 487 ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl 561 (840)
T KOG2003|consen 487 RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVL 561 (840)
T ss_pred ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHH
Confidence 1112357788888888887764 33333333 23456778888888888776442 12256667
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011714 299 STLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIR 378 (479)
Q Consensus 299 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 378 (479)
.-+...|-...+...|++++.+.... ++.|+.++..+...|- +.|+-.+|.+.+-.--+. .+.+..+...+..
T Consensus 562 ~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlyd-----qegdksqafq~~ydsyry-fp~nie~iewl~a 634 (840)
T KOG2003|consen 562 VQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYD-----QEGDKSQAFQCHYDSYRY-FPCNIETIEWLAA 634 (840)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhh-----cccchhhhhhhhhhcccc-cCcchHHHHHHHH
Confidence 77777888888888888888776543 3446667777777664 668878887766554443 3337778888888
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH-HcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 011714 379 TLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQAL-CGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLE 454 (479)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (479)
.|....-+++++.+|+++.- +.|+..-|..++..| .+.|++.+|..+++...+.. +.+...+..|++.+...|
T Consensus 635 yyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf-pedldclkflvri~~dlg 708 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF-PEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-ccchHHHHHHHHHhcccc
Confidence 88888888999999987654 678888888877644 57899999999998887764 668888888888887776
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.70 E-value=3.3e-13 Score=125.07 Aligned_cols=284 Identities=14% Similarity=0.084 Sum_probs=151.5
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCCHHHH
Q 011714 168 SGRLKEALEVLDQMGRIGCKPNIQT-YNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYT--AVMDGFCKVGRSNEA 244 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a 244 (479)
.|++++|.+.+....+.. +++.. |.....+..+.|+++.|.+++.++.+. .|+..... .....+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 456666665555443321 11222 222233335556666666666665543 22322211 224455556666666
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-------hHHHHHHHHHHhcCChHHHHHH
Q 011714 245 MELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDK-------ISYSTLLNGLLKWGKIRPAVSI 317 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~ 317 (479)
...++++.+.... +......+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666666555322 4455555666666666666666666666555433211 1222223322333344444455
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 011714 318 FKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAI 397 (479)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 397 (479)
++.+.+. .+.+......+...+. ..|+.++|..++++..+... +.. -.++.+....++.+++++..+...
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~-----~~g~~~~A~~~L~~~l~~~~--~~~--l~~l~~~l~~~~~~~al~~~e~~l 321 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLI-----ECDDHDTAQQIILDGLKRQY--DER--LVLLIPRLKTNNPEQLEKVLRQQI 321 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHhcCC--CHH--HHHHHhhccCCChHHHHHHHHHHH
Confidence 5444322 1234444444555554 55677777777766655322 221 112333334577777777777766
Q ss_pred HcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 398 EMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 398 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
+.. +-|+..+..+...|.+.+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.++|++.+..
T Consensus 322 k~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 322 KQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 542 224555667777777777777777777777765 466666677777777777777777777776653
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.70 E-value=3.1e-13 Score=126.06 Aligned_cols=292 Identities=11% Similarity=0.001 Sum_probs=150.8
Q ss_pred cCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 011714 168 SGRLKEALEVLDQMGRIGCKPN-IQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAME 246 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 246 (479)
.|+++.|.+.+.+..+.. |+ ...+-....+....|+.+.|.+++.+..+....+...........+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 456666666655554432 22 222333344555556666666666555443211111222223455555666666666
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHH-HHHHH---HHhcCChHHHHHHHHHHH
Q 011714 247 LLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYS-TLLNG---LLKWGKIRPAVSIFKEMV 322 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~---~~~~~~~~~a~~~~~~~~ 322 (479)
.++.+.+..+. +......+...+.+.|++++|.+.+..+.+.+.. +...+. .-..+ ....+..+++.+.+..+.
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 66666555322 4445555556666666666666666666555432 222111 11111 111122222222333333
Q ss_pred HcCC---CcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhh-HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011714 323 RFGF---EVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGT-YGIVIRTLGKGKKTDEALIHLHHAIE 398 (479)
Q Consensus 323 ~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~ 398 (479)
+... +.+......+...+. ..|+.++|.+++++..+..+...... ...........++.+.+.+.+++..+
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~-----~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLI-----DCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHH-----HCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 2211 124444444444443 45666666666666665543321111 11111222334566777777777665
Q ss_pred cCCCCch--HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 399 MGHIPRT--ITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 399 ~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
.. +-|+ ....++.+.|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++.+..
T Consensus 328 ~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 328 NV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred hC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 42 2233 4566777888888888888888885433333577777778888888888888888888877654
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=4.5e-13 Score=124.25 Aligned_cols=284 Identities=12% Similarity=0.053 Sum_probs=198.2
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHhcCCHHHH
Q 011714 133 KNDFFEARKVIDCMFDNGYHPNVTTFT-ILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYN--CLLKGLCYVGRVEEA 209 (479)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 209 (479)
.|+++.|++......+.. +++..+. .......+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 577777777666655432 1223332 2234446777888888888777764 44443222 335667777888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-------hhHHHHHHHHHhcCChhhHHHH
Q 011714 210 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNV-------VTFNTLFNGYCKEGTPMKGVGL 282 (479)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~ 282 (479)
...++++.+.... +......+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8888877776533 5667777777788888888888888777776544222 1223333333344445556666
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHH
Q 011714 283 LKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMT 362 (479)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~ 362 (479)
++.+.+. .+.+......+...+...|+.++|..++.+..+. .++...... .... ..++.+++.+..+...
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~l--~~~l-----~~~~~~~al~~~e~~l 321 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVLL--IPRL-----KTNNPEQLEKVLRQQI 321 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHH--Hhhc-----cCCChHHHHHHHHHHH
Confidence 6665433 2347778888999999999999999999998874 444432221 1221 3488899999999988
Q ss_pred hCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 011714 363 KKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (479)
+..+. |+..+..+...+...|++++|.+.|+.+.+ ..|+..++..+..++.+.|+.++|..++++....
T Consensus 322 k~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 322 KQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred hhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 87665 778888999999999999999999999987 4688888899999999999999999999987654
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.69 E-value=4.6e-13 Score=124.90 Aligned_cols=291 Identities=13% Similarity=0.026 Sum_probs=179.5
Q ss_pred hcCChhhHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 011714 132 NKNDFFEARKVIDCMFDNGYHPN-VTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNI--QTYNCLLKGLCYVGRVEE 208 (479)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 208 (479)
..|+++.|.+.+....+.. |+ ...+-....+....|+.+.|.+.+.+..+.. |+. ..-......+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 4566777777666655542 33 2233334455566677777777776665442 332 233334566666777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHH-HHHHHH---HhcCChhhHHHHHH
Q 011714 209 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFN-TLFNGY---CKEGTPMKGVGLLK 284 (479)
Q Consensus 209 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~g~~~~a~~~~~ 284 (479)
|...++.+.+..+. +......+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+++.+.+.
T Consensus 172 Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 77777777665422 4556666667777777777777777777666443 222221 111111 22222333333444
Q ss_pred HHHhCCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHH
Q 011714 285 LMKKRNC---LPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKM 361 (479)
Q Consensus 285 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 361 (479)
.+..... +.+...+..+...+...|+.++|.+++++..+.........+. ++..+... ..++.+.+.+.++..
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l---~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRL---KPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhc---CCCChHHHHHHHHHH
Confidence 4433321 1266777778888888888888888888887753322211111 22222211 346777888888887
Q ss_pred HhCCCCCCh--hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011714 362 TKKVSVTDP--GTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYE 433 (479)
Q Consensus 362 ~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (479)
.+..+. |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 326 lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 326 AKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 766544 55 667788999999999999999999544444578888888999999999999999999998654
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=6.1e-16 Score=137.07 Aligned_cols=224 Identities=17% Similarity=0.125 Sum_probs=60.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCh
Q 011714 232 MDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKI 311 (479)
Q Consensus 232 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (479)
...+...++++.|...++++...+.. +...+..++.. ...+++++|.++++...+.. ++...+..++..+...+++
T Consensus 51 a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~ 126 (280)
T PF13429_consen 51 ADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDY 126 (280)
T ss_dssp -----------------------------------------------------------------------H-HHHTT-H
T ss_pred cccccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHH
Confidence 33333444444444444444443222 23333333333 34444444444444333221 2333334444444444555
Q ss_pred HHHHHHHHHHHHcCC-CcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHH
Q 011714 312 RPAVSIFKEMVRFGF-EVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEAL 390 (479)
Q Consensus 312 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 390 (479)
+++.++++.+....- ..+...+..+...+. +.|+.++|...+++..+..+. |......++..+...|+.+++.
T Consensus 127 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-----~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~ 200 (280)
T PF13429_consen 127 DEAEELLEKLEELPAAPDSARFWLALAEIYE-----QLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAR 200 (280)
T ss_dssp HHHHHHHHHHHH-T---T-HHHHHHHHHHHH-----HCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHH
Confidence 554444444432211 122222222222222 345555555555555444333 3444445555555555555555
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHH
Q 011714 391 IHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAAL 467 (479)
Q Consensus 391 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (479)
++++...... +.|+..+..+..++...|++++|+.++++..+.. +.|+.....+..++...|+.++|.++.+++.
T Consensus 201 ~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 201 EALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 5554444331 2233444555555555555555555555555443 3345555555555555555555555555443
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.5e-11 Score=108.16 Aligned_cols=396 Identities=10% Similarity=0.026 Sum_probs=261.1
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHH
Q 011714 62 KASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARK 141 (479)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 141 (479)
.++....|..+|+.....+.. +...|-..+..=.++.++..|..++++.+..- +.-...|.-.+.+=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHH
Confidence 345678899999998876654 88888889999999999999999999988652 2223356666666667799999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 011714 142 VIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND-G 220 (479)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 220 (479)
+|+....- .|+...|.+.|+.=.+.+.++.|..+|++..-. .|++.+|--..+.=.+.|....+..+|+...+. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 99998864 789999999999999999999999999998765 588889888888888888888888888877653 1
Q ss_pred -CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-------------------------------------------
Q 011714 221 -LKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGV------------------------------------------- 256 (479)
Q Consensus 221 -~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------------------------------------------- 256 (479)
-..+...+.+....=.++..++.|.-+|+-.++.=.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 011233344444333344455555555554444311
Q ss_pred CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-------hHHHHHHHHH---HhcCChHHHHHHHHHHHHcCC
Q 011714 257 TPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDK-------ISYSTLLNGL---LKWGKIRPAVSIFKEMVRFGF 326 (479)
Q Consensus 257 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~ 326 (479)
+-|-.+|--.+..-...|+.+...+++++.... ++|-. ..|..+--++ ....+.+.+.++|+..++. +
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-I 396 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-I 396 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-c
Confidence 123344444555555556666666666666654 23311 1111111111 2355666666666666652 2
Q ss_pred CcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchH
Q 011714 327 EVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTI 406 (479)
Q Consensus 327 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 406 (479)
+....++..+--.++... -++.++..|.+++...... .|...++...|..-.+.+.++.+.+++++.++.+.. +..
T Consensus 397 PHkkFtFaKiWlmyA~fe-IRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~ 472 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFE-IRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCY 472 (677)
T ss_pred CcccchHHHHHHHHHHHH-HHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhH
Confidence 223344444433333211 2456677777777665543 455567777777777888888888888888876433 566
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 407 TFNNVIQALCGEGKIDKALLLLFLMYEHAK-IPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
+|......-...|+.+.|..+|+.++.... ......|...|+--...|.++.|..+|+++++.
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 777776666677888888888887776432 223345666666667778888888888888764
No 38
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=3.9e-12 Score=106.40 Aligned_cols=236 Identities=16% Similarity=0.178 Sum_probs=120.1
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHhHHHHH
Q 011714 51 SLQAQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYG-LAPN--SWTFSIMI 127 (479)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~ 127 (479)
|+.+-.-++.+-+...++|+++|-+|.+.+.. +.++.-+|.+.|.+.|..+.|+++...+.++. ..-+ ......|.
T Consensus 36 sr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 36 SRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLG 114 (389)
T ss_pred cHHHHhHHHHHhhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 33444445555566666666666666554332 44555556666666666666666666655421 0000 12223344
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhc
Q 011714 128 RCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN----IQTYNCLLKGLCYV 203 (479)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 203 (479)
.-|...|-++.|+.+|..+.+.+ .--......|+..|-...+|++|+++-+++.+.+-.+. ...|..+...+...
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 45555666666666666665433 22344455566666666666666666665555432222 12334444444445
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHH
Q 011714 204 GRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLL 283 (479)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 283 (479)
.+++.|..++.+..+.+.+ .+..--.+.+.....|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+
T Consensus 194 ~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 194 SDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5555555555555544322 222333344455555555555555555555433333334455555555555555555555
Q ss_pred HHHHhC
Q 011714 284 KLMKKR 289 (479)
Q Consensus 284 ~~~~~~ 289 (479)
..+.+.
T Consensus 273 ~~~~~~ 278 (389)
T COG2956 273 RRAMET 278 (389)
T ss_pred HHHHHc
Confidence 555443
No 39
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=5.6e-12 Score=108.67 Aligned_cols=293 Identities=14% Similarity=0.088 Sum_probs=193.5
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 011714 168 SGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMEL 247 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 247 (479)
.|++.+|.+...+-.+.+ +.....|..-..+--..|+.+.+-.++.+..+.-..++....-...+.....|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577777777777766555 2234455555666667777777777777776653344555556666667777777777777
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-------hHHHHHHHHHHhcCChHHHHHHHHH
Q 011714 248 LNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDK-------ISYSTLLNGLLKWGKIRPAVSIFKE 320 (479)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 320 (479)
++++.+.+.. +.........+|.+.|++.....++..+.+.|.-.+. .+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777666544 4556677777777777777777777777776654443 3556666655555555555556665
Q ss_pred HHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 011714 321 MVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMG 400 (479)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 400 (479)
..+. .+-++.....++.-+. ++|+.++|.++..+..++...|. -...-.+.+.++.+.-++..++-...
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li-----~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~- 323 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLI-----RLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ- 323 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHH-----HcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-
Confidence 5432 2334455555555554 66888888888877777655443 22223345666766666666665543
Q ss_pred CCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCC
Q 011714 401 HIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIPQR 475 (479)
Q Consensus 401 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 475 (479)
.+.++..+.+|...|.+.+.+.+|..+|+...+. .|+..+|..+.+++.+.|+..+|.++.++.+..-..|+.
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 2234567888888888888888888888877765 578888888888888888888888888888765555543
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=1.8e-15 Score=134.05 Aligned_cols=254 Identities=13% Similarity=0.136 Sum_probs=71.4
Q ss_pred hcCChhhHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 011714 62 KASPLKERIDIFDSIKKDG-TNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEAR 140 (479)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (479)
..+++++|+++++...... .+.+...|..+...+...++++.|++.++++...+ +-+...+..++.. ...+++++|.
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~ 97 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEAL 97 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccccccccc
Confidence 4455566666664332222 22234444444445555566666666666655543 2234445455544 4555666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011714 141 KVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIG-CKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND 219 (479)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 219 (479)
++++...+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.+++..+.
T Consensus 98 ~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 175 (280)
T PF13429_consen 98 KLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL 175 (280)
T ss_dssp ----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred ccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 655554433 2344445555555556666666666665544321 2334555555555566666666666666665554
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHH
Q 011714 220 GLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYS 299 (479)
Q Consensus 220 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 299 (479)
.+. |......++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++|+.++++..+.. +.|.....
T Consensus 176 ~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~ 252 (280)
T PF13429_consen 176 DPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLL 252 (280)
T ss_dssp -TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHH
T ss_pred CCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccc
Confidence 211 34555555555555666665555555554432 2234445555566666666666666666655532 22455555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 011714 300 TLLNGLLKWGKIRPAVSIFKEMV 322 (479)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~ 322 (479)
.+..++...|+.++|.++..++.
T Consensus 253 ~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 253 AYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHT----------------
T ss_pred ccccccccccccccccccccccc
Confidence 55556666666666665555443
No 41
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=2.2e-10 Score=104.80 Aligned_cols=388 Identities=12% Similarity=0.013 Sum_probs=291.5
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHH
Q 011714 63 ASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKV 142 (479)
Q Consensus 63 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 142 (479)
-...+.|+-++....+.- +.+.. |..+|++..-++.|..+++...+. ++.+..+|.+-...=-.+|+.+...++
T Consensus 389 lE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 389 LEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred ccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 344455666666665432 22333 445667777888899998888764 577788888777777788888888888
Q ss_pred HHHHH----hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011714 143 IDCMF----DNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN--IQTYNCLLKGLCYVGRVEEAYEMLMNV 216 (479)
Q Consensus 143 ~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 216 (479)
+++-. ..|+..+...|-.=...|-..|.+-.+..+....+..|+.-. ..||..-...|.+.+.++-|..+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 77543 567888888888888888888888888888888887775433 468888888899999999999999888
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHh
Q 011714 217 KNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKI 296 (479)
Q Consensus 217 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 296 (479)
++.- +.+...|...+..--..|..++...+|+++... ++-....|-.....+-..|+...|..++....+.... +..
T Consensus 543 lqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-see 619 (913)
T KOG0495|consen 543 LQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEE 619 (913)
T ss_pred Hhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHH
Confidence 8753 336677777777767788889999999998876 3345667777777888889999999999988876533 677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHH
Q 011714 297 SYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIV 376 (479)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 376 (479)
.|..-+.......+++.|..+|.+....+..+...+-..-+..+ .+..++|.+++++..+.-+. -...|..+
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~-------ld~~eeA~rllEe~lk~fp~-f~Kl~lml 691 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERY-------LDNVEEALRLLEEALKSFPD-FHKLWLML 691 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHH-------hhhHHHHHHHHHHHHHhCCc-hHHHHHHH
Confidence 88888888889999999999999887654333333333333333 48889999999888775432 33578888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCH
Q 011714 377 IRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKS 456 (479)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 456 (479)
.+.+-+.++.+.|.+.|..-.+. ++.....|..+...--+.|.+-.|..++++..-.+ +.+...|-..|..-.+.|..
T Consensus 692 GQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 692 GQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNK 769 (913)
T ss_pred hHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCH
Confidence 88888888888888887654443 22334567777777778889999999999988776 55888899999999999999
Q ss_pred hHHHHHHHHHHhC
Q 011714 457 YDACALYGAALKQ 469 (479)
Q Consensus 457 ~~A~~~~~~~~~~ 469 (479)
+.|..+.-++++.
T Consensus 770 ~~a~~lmakALQe 782 (913)
T KOG0495|consen 770 EQAELLMAKALQE 782 (913)
T ss_pred HHHHHHHHHHHHh
Confidence 9999888887763
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.3e-11 Score=108.86 Aligned_cols=222 Identities=17% Similarity=0.143 Sum_probs=172.1
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHH
Q 011714 235 FCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPA 314 (479)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 314 (479)
+.-.|+...|..-|+..++.... +...|--+...|....+.++.+..|++..+.+.. ++.+|..-.+...-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 34578999999999999987544 3334788888999999999999999999887643 667777777778888999999
Q ss_pred HHHHHHHHHcCCCcC-HHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHH
Q 011714 315 VSIFKEMVRFGFEVD-ERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHL 393 (479)
Q Consensus 315 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 393 (479)
..-|++.+.. .|. ...+..+..+.. +.+.+++++..|++..++-+. -+..|+.....+...++++.|.+.|
T Consensus 414 ~aDF~Kai~L--~pe~~~~~iQl~~a~Y-----r~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~Y 485 (606)
T KOG0547|consen 414 IADFQKAISL--DPENAYAYIQLCCALY-----RQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQY 485 (606)
T ss_pred HHHHHHHhhc--ChhhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHH
Confidence 9999998865 333 222333333332 678999999999999887544 6789999999999999999999999
Q ss_pred HHHHHcCCC-------CchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHH
Q 011714 394 HHAIEMGHI-------PRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAA 466 (479)
Q Consensus 394 ~~~~~~~~~-------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (479)
+...+.... +.+.+-..++ .+.-.+++..|++++++.++.+ +-....|..|.....++|+.++|+++|++.
T Consensus 486 D~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 486 DKAIELEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHhhccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 998875222 1122222222 2234599999999999999986 446678999999999999999999999987
Q ss_pred Hh
Q 011714 467 LK 468 (479)
Q Consensus 467 ~~ 468 (479)
..
T Consensus 564 a~ 565 (606)
T KOG0547|consen 564 AQ 565 (606)
T ss_pred HH
Confidence 54
No 43
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.62 E-value=7.8e-11 Score=107.71 Aligned_cols=380 Identities=12% Similarity=-0.019 Sum_probs=266.6
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 011714 75 SIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN--SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYH 152 (479)
Q Consensus 75 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 152 (479)
++...|+..+...|-.=...|-+.|..-.+..+....+..|+.-. ..+|..-...|.+.+.++-|+.+|...++. ++
T Consensus 469 ~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp 547 (913)
T KOG0495|consen 469 ELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FP 547 (913)
T ss_pred HHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-cc
Confidence 345677777888888888888888888888888888777665432 457777778888888888888888888765 34
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011714 153 PNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVM 232 (479)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 232 (479)
.+...|......--..|..++...+|++....- +.....|......+-..|+...|..++....+.... +...|-+.+
T Consensus 548 ~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaav 625 (913)
T KOG0495|consen 548 CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAV 625 (913)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 566777777766667788888888888777652 445556666667777778888888888877776443 667777777
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChH
Q 011714 233 DGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIR 312 (479)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 312 (479)
..-.....++.|..+|.+.... .|+...|.--+....-.+..++|++++++..+. ++.-...|..+.+.+-+.++++
T Consensus 626 Kle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHH
Confidence 7777788888888888777653 456666666666666677788888888777765 2222445666667777778888
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHH
Q 011714 313 PAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIH 392 (479)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 392 (479)
.|.+.|..-.+. -|+...+..++.-+- ++.|.+-.|..++++..-+++. +...|-..|+.-.+.|..+.|..+
T Consensus 703 ~aR~aY~~G~k~--cP~~ipLWllLakle----Ek~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 703 MAREAYLQGTKK--CPNSIPLWLLLAKLE----EKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHhcccc--CCCCchHHHHHHHHH----HHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHH
Confidence 887777665443 344444444443332 3556777888888877777666 667777778888888887777776
Q ss_pred HHHHHHcC-----------------------------CCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhH
Q 011714 393 LHHAIEMG-----------------------------HIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSY 443 (479)
Q Consensus 393 ~~~~~~~~-----------------------------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 443 (479)
..+++..- ..-|+.+...+...+....+++.|++.|.+.++.+ +..-.+|
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~w 854 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAW 854 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHH
Confidence 65554431 12244455566666677778888888888888776 4466778
Q ss_pred HHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 444 DMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
..+...+.+.|.-++-.+++.+...
T Consensus 855 a~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 855 AWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 8888888888877777777776654
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=2.1e-13 Score=118.86 Aligned_cols=373 Identities=15% Similarity=0.146 Sum_probs=208.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHH-HHHHHHHhcCChhhHHHHHHHHHhCCCCCC----HHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFS-IMIRCYCNKNDFFEARKVIDCMFDNGYHPN----VTTF 158 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~ 158 (479)
+-..+..|.+.|..+..+.+|+..|+-+.+..+-|+.-... .+...+.+...+.+|+++|+..+..-...+ ....
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 44455556677777888889999999888877777765443 355677788888889988887775422222 2345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------------CCHH
Q 011714 159 TILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLK------------PDVY 226 (479)
Q Consensus 159 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~ 226 (479)
+.+.-.+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|...-.. |+..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 55555677888899999888887766 577776666777777788888888888887654222 2222
Q ss_pred HHHHHHH-----HHHccCCHHHHHHHHHHHHH---CCCCCCHh-------------hH--------HHHHHHHHhcCChh
Q 011714 227 TYTAVMD-----GFCKVGRSNEAMELLNEAIE---RGVTPNVV-------------TF--------NTLFNGYCKEGTPM 277 (479)
Q Consensus 227 ~~~~li~-----~~~~~~~~~~a~~~~~~~~~---~~~~~~~~-------------~~--------~~l~~~~~~~g~~~ 277 (479)
..+..|. -.-+.+ -..|++..-...+ --+.|+-. .+ -.-...|.+.|+++
T Consensus 358 ll~eai~nd~lk~~ek~~-ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKEN-KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHhhHHHHHHHHhh-hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 2221111 000100 0111111111110 00001100 00 00112344555555
Q ss_pred hHHHHHHHHHhCCCCCC---------------------HhHHHHH---------------HHHHHhcCChHHHHHHHHHH
Q 011714 278 KGVGLLKLMKKRNCLPD---------------------KISYSTL---------------LNGLLKWGKIRPAVSIFKEM 321 (479)
Q Consensus 278 ~a~~~~~~~~~~~~~~~---------------------~~~~~~l---------------~~~~~~~~~~~~a~~~~~~~ 321 (479)
.|+++++-+.++.-+.- ...|..+ .......|++++|.+.|++.
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 55555444433211100 0000000 00111245566666666665
Q ss_pred HHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHH----------------------------------HHHHhCCCC
Q 011714 322 VRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVF----------------------------------EKMTKKVSV 367 (479)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~----------------------------------~~~~~~~~~ 367 (479)
+...-......|+.-+.+ ...|++++|++.| .+.... ++
T Consensus 517 l~ndasc~ealfniglt~------e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip 589 (840)
T KOG2003|consen 517 LNNDASCTEALFNIGLTA------EALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IP 589 (840)
T ss_pred HcCchHHHHHHHHhcccH------HHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CC
Confidence 544332223333322222 1334444444444 333332 12
Q ss_pred CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 011714 368 TDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLI 447 (479)
Q Consensus 368 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 447 (479)
.|+..++-+...|-+.|+-..|.+.+-.-... ++.+..+...|...|....-+++++.+|++..- +.|+..-|..++
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmi 666 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMI 666 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHH
Confidence 25566666677777777777776655443332 334566667777777778888888999887754 479999999888
Q ss_pred HHH-hccCCHhHHHHHHHHHHhC
Q 011714 448 TKL-DQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 448 ~~~-~~~g~~~~A~~~~~~~~~~ 469 (479)
..| .+.|+++.|.++|+..-++
T Consensus 667 asc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHHh
Confidence 755 5689999999999987553
No 45
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=1.1e-11 Score=106.87 Aligned_cols=292 Identities=14% Similarity=0.122 Sum_probs=203.5
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011714 133 KNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEM 212 (479)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 212 (479)
.|++..|++...+-.+.+ +.....|..-..+--..|+.+.+-.++.+..+.--.++....-+..+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 477777777777766554 2233444555556666777777777777776653345555666666677777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-------hhHHHHHHHHHhcCChhhHHHHHHH
Q 011714 213 LMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNV-------VTFNTLFNGYCKEGTPMKGVGLLKL 285 (479)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~ 285 (479)
++++.+.+.. .........++|.+.|++.+...++..+.+.|.-.+. .+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777766533 5566667777777777777777777777776554332 3456666655555555555556665
Q ss_pred HHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCC
Q 011714 286 MKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKV 365 (479)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 365 (479)
...+ .+.++..-..++.-+...|+.++|.++..+..+++..|. ...++... +.++.+.-++..+.-.+..
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~l------~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIPRL------RPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHhhc------CCCCchHHHHHHHHHHHhC
Confidence 5443 334566677778888899999999999999988877665 23333332 4566666666666655544
Q ss_pred CCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 011714 366 SVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPS 439 (479)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 439 (479)
+. ++..+.++...|.+.+.|.+|.+.|+...+ ..|+..+|+.+..++.+.|+.++|.+..++......+|+
T Consensus 325 ~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 325 PE-DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred CC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 33 557899999999999999999999998777 478999999999999999999999999998775443443
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=9.1e-12 Score=104.21 Aligned_cols=289 Identities=14% Similarity=0.097 Sum_probs=214.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCh
Q 011714 98 LNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNV------TTFTILVNSLCKSGRL 171 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~ 171 (479)
.++.++|+++|-+|.+.. +.+..+--+|.+.|.+.|..+.|+++.+.+.++ ||. ...-.|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 578899999999999753 445667778889999999999999999999874 332 2345567778889999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHH
Q 011714 172 KEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPD----VYTYTAVMDGFCKVGRSNEAMEL 247 (479)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~ 247 (479)
|.|.++|..+.+.+ .--..+...|+..|-...+|++|+..-+++.+.+..+. ...|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999998765 33456788899999999999999999999888755443 23455566666677889999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 011714 248 LNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFE 327 (479)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 327 (479)
+.+..+.+.+ .+..--.+.+.+...|+++.|++.++...+.+..--..+...|..+|...|+.++....+..+.+....
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 9999886433 444555677788999999999999999998875555667888899999999999999999998876444
Q ss_pred cCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh---cCCCHHHHHHHHHHHHHcCC
Q 011714 328 VDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLG---KGKKTDEALIHLHHAIEMGH 401 (479)
Q Consensus 328 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~ 401 (479)
++.. ..+..... ...-.+.|...+.+-... .|+...+..++..-. ..|...+.+.+++.|+...+
T Consensus 282 ~~~~--l~l~~lie-----~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 282 ADAE--LMLADLIE-----LQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred ccHH--HHHHHHHH-----HhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 4332 22222221 234455566555544443 367777777777654 34557777888888875533
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=1.3e-12 Score=119.57 Aligned_cols=286 Identities=12% Similarity=0.109 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011714 101 QETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNG--YHPNVTTFTILVNSLCKSGRLKEALEVL 178 (479)
Q Consensus 101 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~ 178 (479)
..+|+..|...... +.-+......+..+|...+++++|+++|+.+.+.. ...+..+|.+.+--+-+ +-++.++
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 45666666664433 23333555566666777777777777777666432 11245555555443321 1122222
Q ss_pred H-HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 011714 179 D-QMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVT 257 (479)
Q Consensus 179 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 257 (479)
. .+.+.. +-.+.+|.++..+|.-+++.+.|++.|++..+.+.. ...+|+.+..-+....++|.|...|+..+....+
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 2 222221 345566777777777777777777777766654211 5666666666666667777777777666543111
Q ss_pred CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 011714 258 PNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLL 337 (479)
Q Consensus 258 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 337 (479)
+-..|..+.-.|.+.++++.|.-.|++..+-+.. +.+....+...+-+.|+.++|+++++++......-....|....
T Consensus 488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred -hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 2223444555666777777777777666665432 44555555566666777777777777766544332222222221
Q ss_pred HHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 011714 338 RGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHI 402 (479)
Q Consensus 338 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 402 (479)
-.+ ..+++++|+..++++++.-+. +...+-.++..|.+.|+.+.|+.-|--+.+...+
T Consensus 566 il~------~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 566 ILF------SLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHH------hhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 111 336677777777777665443 4556667777777777777777777666654333
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3.7e-11 Score=105.43 Aligned_cols=331 Identities=11% Similarity=0.020 Sum_probs=233.5
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHH
Q 011714 115 GLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN--IQT 192 (479)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~ 192 (479)
+...|...+......+-+.|..+.|+..|...... .|..-..|..|.... .+.+.+..+.. |.+.| ...
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~~l~~-----~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILSILVV-----GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHHHHHh-----cCcccchHHH
Confidence 44566666666666777888888888888887754 233334444443332 23333322221 11222 222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHH
Q 011714 193 YNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGV--TPNVVTFNTLFNGY 270 (479)
Q Consensus 193 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~ 270 (479)
=-.+..++......+++.+-.+.....|++-+...-+....+.....++++|+.+|+++.+..+ -.|..+|+.++.+-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 2235566777778888888888888888776666556666667788899999999999988621 12556777666543
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH-HHhcccchhhc
Q 011714 271 CKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLR-GLCMKSWEEKD 349 (479)
Q Consensus 271 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~ 349 (479)
..... +.++-+-.-.--+-.+.|...+.+-|+-.++.++|...|++.++. .|.......++. -|. +.+
T Consensus 310 ~~~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyv-----EmK 378 (559)
T KOG1155|consen 310 NDKSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYV-----EMK 378 (559)
T ss_pred hhhHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHH-----Hhc
Confidence 32221 222221111101124567778888888899999999999999875 444444444443 343 668
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHH
Q 011714 350 LLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLF 429 (479)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (479)
+...|..-|+...+-++. |...|-.++++|.-.+.+.-|+-+|+++.... +.|...|.+|..+|.+.++.++|++.|.
T Consensus 379 Nt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 379 NTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred ccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 889999999999987766 88899999999999999999999999998753 3478899999999999999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 430 LMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 430 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
.....+ ..+...+..|.+.|.+.++.++|...|++-++
T Consensus 457 rai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 457 RAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999877 44668899999999999999999999988776
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.6e-10 Score=101.50 Aligned_cols=362 Identities=13% Similarity=0.068 Sum_probs=244.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHH--H
Q 011714 82 NWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTF--T 159 (479)
Q Consensus 82 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~ 159 (479)
..|...+....-.+.+.|..+.|+..|......- +-.=..|..|...+ .+. ++...+.. |.+.|.... -
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~----e~~~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDI----EILSILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chH----HHHHHHHh-cCcccchHHHHH
Confidence 3455555555555666788888888888776432 22333343333332 222 22222222 222221111 1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHc
Q 011714 160 ILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLK--PDVYTYTAVMDGFCK 237 (479)
Q Consensus 160 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~ 237 (479)
-+..++-...+.+++.+-.+.....|.+-+...-+....+.....++++|+.+|+++.+..+- -|..+|..++-. +
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--K 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--H
Confidence 234556666688888888888888887766666666667777889999999999999887321 267788777643 3
Q ss_pred cCCHHHHHHHHHHHH-H-CCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHH
Q 011714 238 VGRSNEAMELLNEAI-E-RGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAV 315 (479)
Q Consensus 238 ~~~~~~a~~~~~~~~-~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 315 (479)
..+.+ +.++.+-. . ... -..|...+.+.|.-.++.++|+.+|++..+.+.. ....|+.+..-|....+...|.
T Consensus 310 ~~~sk--Ls~LA~~v~~idKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 310 NDKSK--LSYLAQNVSNIDKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hhhHH--HHHHHHHHHHhccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 22221 22221111 1 112 3456778888889999999999999999887633 4567778888899999999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHH
Q 011714 316 SIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHH 395 (479)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 395 (479)
+-++.+++... -|-..+-.+-.+|. -.+...-|+-.|++.....+. |+..|.+|+.+|.+.++.++|++.|..
T Consensus 385 ~sYRrAvdi~p-~DyRAWYGLGQaYe-----im~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 385 ESYRRAVDINP-RDYRAWYGLGQAYE-----IMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred HHHHHHHhcCc-hhHHHHhhhhHHHH-----HhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999987542 35556666666664 457788899999988877655 889999999999999999999999999
Q ss_pred HHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CC-CC-CHhhHHHHHHHHhccCCHhHHHHHHHHHH
Q 011714 396 AIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEH----AK-IP-SRTSYDMLITKLDQLEKSYDACALYGAAL 467 (479)
Q Consensus 396 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (479)
+...|-. +...+..+...|-+.++.++|..++++-++. |. .| .......|..-+.+.+++++|-.......
T Consensus 458 ai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 458 AILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 8876533 5678999999999999999999888887652 21 22 22333345566777788888776554443
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=4.1e-12 Score=116.39 Aligned_cols=289 Identities=15% Similarity=0.046 Sum_probs=219.8
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011714 134 NDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIG--CKPNIQTYNCLLKGLCYVGRVEEAYE 211 (479)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 211 (479)
=+..+|...|..+... +.-+.++...+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+-.+-+. -++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 3567899999996654 34456777889999999999999999999998753 112566777777654322 2233
Q ss_pred HH-HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 011714 212 ML-MNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN 290 (479)
Q Consensus 212 ~~-~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (479)
++ +.+... -+-.+.+|.++.++|...++.+.|++.|++.++.... ...+|+.+..-+.....+|+|...|+..+...
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 33 233332 2336889999999999999999999999999886432 77899999999999999999999999887653
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCC
Q 011714 291 CLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDER-MMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTD 369 (479)
Q Consensus 291 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 369 (479)
.. +...|-.+.-.|.+.++++.|.-.|+++.+.+ |... ....+...+ .+.|+.++|+.++++....++. |
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~-----~~~k~~d~AL~~~~~A~~ld~k-n 556 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQ-----HQLKRKDKALQLYEKAIHLDPK-N 556 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHH-----HHhhhhhHHHHHHHHHHhcCCC-C
Confidence 22 33445556678999999999999999998754 4332 222222233 4779999999999999987776 5
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 011714 370 PGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPS 439 (479)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 439 (479)
+..--..+..+...+++++|+..++++++. ++-+..++..+...|.+.|+.+.|+.-|--+.+.+.+..
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 655556777888899999999999999885 333466788888999999999999999999988764433
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=1.1e-09 Score=96.59 Aligned_cols=376 Identities=14% Similarity=0.044 Sum_probs=278.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
.+...|-...+-=..++++..|..+|+++.... ..+...|...+.+=.++..+..|..+++..+.. .|.-...|--.+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHH
Confidence 366667666666677889999999999998765 667778888888889999999999999999875 232334566666
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 011714 163 NSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 242 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 242 (479)
.+=-..|++..|.++|++-.+- .|+..+|++.|..=.+-+.++.|..+|+...-. .|+..+|--....=.+.|...
T Consensus 149 ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHH
Confidence 6666789999999999998875 899999999999999999999999999999864 689999999998889999999
Q ss_pred HHHHHHHHHHHC-CCC-CCHhhHHHHHHHHHhcCChhhHHHHHHHHH---------------------------------
Q 011714 243 EAMELLNEAIER-GVT-PNVVTFNTLFNGYCKEGTPMKGVGLLKLMK--------------------------------- 287 (479)
Q Consensus 243 ~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------------------------------- 287 (479)
.+..+|+.+++. |-. .+...+.+....-.+...++.|.-+|+-.+
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 999999988764 110 112223333222222333333333332221
Q ss_pred -----------hCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHH--HHHH---HHHHHhcccchhhccH
Q 011714 288 -----------KRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDER--MMNS---LLRGLCMKSWEEKDLL 351 (479)
Q Consensus 288 -----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~---l~~~~~~~~~~~~~~~ 351 (479)
+.+ +.|..+|-..++.-...|+.+...++|+.++.. ++|-.. .+.. +--.|+.-..-...+.
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 111 235567777777777889999999999998854 344211 1111 1111111111256889
Q ss_pred HHHHHHHHHHHhCCCCCChhh----HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHH
Q 011714 352 EDAYQVFEKMTKKVSVTDPGT----YGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLL 427 (479)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 427 (479)
+.+.++|+...+.-+. ...+ |-.......++.+...|.+++-.++ |.-|...+|...|..-.+.++++.+..+
T Consensus 383 ertr~vyq~~l~lIPH-kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDLIPH-KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhhcCc-ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999988874322 3334 4444555567889999999998776 4578889999999999999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 428 LFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
+++.++-+ +-+..+|......-...|+++.|..+|+-++.+.
T Consensus 460 YEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 460 YEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 99999986 5588899998888889999999999999998763
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.6e-09 Score=97.70 Aligned_cols=273 Identities=13% Similarity=0.056 Sum_probs=198.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 011714 189 NIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFN 268 (479)
Q Consensus 189 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 268 (479)
+.........-+...+++.+..++.+.+.+.. ++....+-.-|.++...|+..+-..+=..+++.- +-...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 33444455555666777788888877777653 3455555556667777777777777766776653 336678888888
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHhcccchh
Q 011714 269 GYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDE-RMMNSLLRGLCMKSWEE 347 (479)
Q Consensus 269 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 347 (479)
.|...|+..+|.+.|.+....+.. =...|.....++...|..++|...+..+.+.-..... ..|..+- | .+
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgme--y-----~~ 392 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGME--Y-----MR 392 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHH--H-----HH
Confidence 888888888888888877554321 2346777777788888888888888776653211111 2222221 2 24
Q ss_pred hccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCCC----chHHHHHHHHHHHcCCCH
Q 011714 348 KDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEM--GHIP----RTITFNNVIQALCGEGKI 421 (479)
Q Consensus 348 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~ 421 (479)
.++++.|.+.|.......+. |+..++-+.......+.+.+|..+|+..+.. .+.+ -..+++.|..+|.+.+.+
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 58899999999998876555 7888888888888899999999999987732 0111 234688899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCC
Q 011714 422 DKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIPQR 475 (479)
Q Consensus 422 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 475 (479)
++|+..+++.+... +.+..++..++-.|...|+++.|.+.|.+++. +.|+.
T Consensus 472 ~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n 522 (611)
T KOG1173|consen 472 EEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDN 522 (611)
T ss_pred HHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCcc
Confidence 99999999999886 66899999999999999999999999999876 44554
No 53
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=1.2e-09 Score=92.81 Aligned_cols=391 Identities=12% Similarity=0.047 Sum_probs=193.1
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 011714 58 VDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFF 137 (479)
Q Consensus 58 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 137 (479)
-+.+...+...|+.+++.-...+-.-...+---+..++.+.|++++|+..|..+.... .++...+..|..++.-.|.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 3445667788888888766533322111222335667778899999999998877654 667777777777777788888
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011714 138 EARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVK 217 (479)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 217 (479)
+|..+..... .++-.-..|+..-.+.|+-++-..+-+.+... ..--.+|.......-.+.+|+.+|....
T Consensus 109 eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887765542 24444455555555666655555555444421 1122233333334445566666666665
Q ss_pred HCCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc--CC-------------------
Q 011714 218 NDGLKPDVYTYTA-VMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKE--GT------------------- 275 (479)
Q Consensus 218 ~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~------------------- 275 (479)
..+ |.....|. +.-+|.+..-++-+.++++-.++. ++.+....|.......+. |+
T Consensus 179 ~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f 255 (557)
T KOG3785|consen 179 QDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPF 255 (557)
T ss_pred hcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchh
Confidence 542 23333322 223444555555555555544443 121222222222222111 11
Q ss_pred --------------hhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh
Q 011714 276 --------------PMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLC 341 (479)
Q Consensus 276 --------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (479)
-+.|++++--+.+. -+..-..++-.|.+.++..+|..+.+++.. ..|.......++.+-.
T Consensus 256 ~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aal 329 (557)
T KOG3785|consen 256 IEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAAL 329 (557)
T ss_pred HHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHh
Confidence 12222222222211 112223344456677777777777666532 2344444444443332
Q ss_pred cccchhhccHHHHHHHHHHHHhCCCCC-----------------------------------ChhhHHHHHHHHhcCCCH
Q 011714 342 MKSWEEKDLLEDAYQVFEKMTKKVSVT-----------------------------------DPGTYGIVIRTLGKGKKT 386 (479)
Q Consensus 342 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------------------------~~~~~~~l~~~~~~~g~~ 386 (479)
-+.......+.-|...|+.....+..- |....-.+.++.+..|.+
T Consensus 330 GQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny 409 (557)
T KOG3785|consen 330 GQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNY 409 (557)
T ss_pred hhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcCh
Confidence 211112233344444444333222211 111112345555666666
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHH-HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhh-HHHHHHHHhccCCHhHHHHHHH
Q 011714 387 DEALIHLHHAIEMGHIPRTITFNN-VIQALCGEGKIDKALLLLFLMYEHAKIPSRTS-YDMLITKLDQLEKSYDACALYG 464 (479)
Q Consensus 387 ~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~ 464 (479)
.+|.++|-.+....++ |..+|.+ |.++|.+.+.++.|..++-++ +.+.+..+ ...+.+-|.+.+.+--|-+.|+
T Consensus 410 ~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd 485 (557)
T KOG3785|consen 410 VEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFD 485 (557)
T ss_pred HHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6666666655443333 3444443 335566666666665554322 21222222 2333445666666666666666
Q ss_pred HHHhCCCC
Q 011714 465 AALKQGVI 472 (479)
Q Consensus 465 ~~~~~~~~ 472 (479)
.+......
T Consensus 486 ~lE~lDP~ 493 (557)
T KOG3785|consen 486 ELEILDPT 493 (557)
T ss_pred HHHccCCC
Confidence 66554433
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.48 E-value=5.6e-11 Score=115.25 Aligned_cols=270 Identities=11% Similarity=0.024 Sum_probs=191.2
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh---------cCChhhHHHHHHHHH
Q 011714 82 NWSVSDFNDLLMALVM-----LNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCN---------KNDFFEARKVIDCMF 147 (479)
Q Consensus 82 ~~~~~~~~~ll~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 147 (479)
..+...|...+.+... .++.++|+..|++..+.. +.+...|..+..++.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3466666666666433 234679999999998764 3456667666665542 245789999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 011714 148 DNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYT 227 (479)
Q Consensus 148 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (479)
+.+ +.+...+..+..++...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.... +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 875 4478888888889999999999999999999875 556778888999999999999999999999887543 2333
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHh
Q 011714 228 YTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLK 307 (479)
Q Consensus 228 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 307 (479)
+..++..+...|++++|...++++.+...+-+...+..+..++...|+.++|...++++.... +.+....+.+...+..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhc
Confidence 334455566789999999999998775323245567778888899999999999998876542 1233445555556676
Q ss_pred cCChHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCC
Q 011714 308 WGKIRPAVSIFKEMVRFG-FEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVS 366 (479)
Q Consensus 308 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 366 (479)
.| +.|...++.+.+.. -.+.......++.++. |+-+.+... +++.+.+.
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAH-------GEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHH-------hhhHHHHHH-HHhhccch
Confidence 67 47777777765421 1222223344444443 777777777 77776554
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=8e-11 Score=101.73 Aligned_cols=200 Identities=10% Similarity=0.028 Sum_probs=113.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
....+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34556666677777777777777777766543 3345566666666677777777777777666543 334555666666
Q ss_pred HHHhcCChHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 011714 164 SLCKSGRLKEALEVLDQMGRIGC-KPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 242 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 242 (479)
.+...|++++|.+.+++...... +.....+..+...+...|++++|...+++...... .+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHH
Confidence 66666677777666666654321 11233444455555666666666666665554421 13444555555555566666
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011714 243 EAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMK 287 (479)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 287 (479)
+|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666655555544 12233444444555555555555555554443
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.5e-09 Score=96.13 Aligned_cols=359 Identities=13% Similarity=0.044 Sum_probs=241.7
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhh
Q 011714 61 IKASPLKERIDIFDSIKKDGTNWS-VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN-SWTFSIMIRCYCNKNDFFE 138 (479)
Q Consensus 61 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 138 (479)
.+.+.+++|++.|.+..+. .|+ +.-|.....+|...|+|++.++--.+..+. .|+ +..+..-..++-..|++++
T Consensus 126 f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~e 201 (606)
T KOG0547|consen 126 FRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDE 201 (606)
T ss_pred hhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHH
Confidence 5678899999999998865 345 677888888999999999998888877765 344 4455555566666666655
Q ss_pred HHHH----------------------HHHH--------Hh-CC--CCCCHHHHHHHHHHHHhc-----------------
Q 011714 139 ARKV----------------------IDCM--------FD-NG--YHPNVTTFTILVNSLCKS----------------- 168 (479)
Q Consensus 139 a~~~----------------------~~~~--------~~-~~--~~~~~~~~~~li~~~~~~----------------- 168 (479)
|+.- +... .+ .+ +-|+.....+....+...
T Consensus 202 al~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~ 281 (606)
T KOG0547|consen 202 ALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALA 281 (606)
T ss_pred HHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHH
Confidence 4321 1111 11 11 224444444433333210
Q ss_pred --------C---ChHHHHHHHHHHhhC-CCCC--C---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011714 169 --------G---RLKEALEVLDQMGRI-GCKP--N---------IQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDV 225 (479)
Q Consensus 169 --------g---~~~~a~~~~~~~~~~-~~~~--~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 225 (479)
+ .+..|.+.+.+-... ...+ + ..+.......+.-.|+.-.|..-|+........++
T Consensus 282 ~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~- 360 (606)
T KOG0547|consen 282 EALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN- 360 (606)
T ss_pred HHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-
Confidence 0 122222222211100 0011 1 11222222334456788889999999888754433
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 011714 226 YTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGL 305 (479)
Q Consensus 226 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 305 (479)
..|--+..+|...++.++.+..|.+..+.+.. +..+|..-.+.+.-.+++++|+.=|++.+..... +...|.-+.-+.
T Consensus 361 ~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~ 438 (606)
T KOG0547|consen 361 SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCAL 438 (606)
T ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHH
Confidence 33777788899999999999999999987654 6778888888888899999999999999886422 456677777777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCC-----Ch--hhHHHHHH
Q 011714 306 LKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVT-----DP--GTYGIVIR 378 (479)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~--~~~~~l~~ 378 (479)
.+.++++++...|++..++ ++--...++.....+. .+++++.|.+.|+...+..+.. +. .+--.++.
T Consensus 439 Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLt-----DqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~ 512 (606)
T KOG0547|consen 439 YRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILT-----DQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHh-----hHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh
Confidence 7889999999999998875 3334566666666665 7799999999999887643321 11 11222222
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 011714 379 TLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (479)
. --.+++..|.++++++.+.+.+ ....|..|...-.+.|+.++|+++|++....
T Consensus 513 ~-qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 513 L-QWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred h-chhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2 2348999999999999986443 4567999999999999999999999987754
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.47 E-value=2.1e-10 Score=111.23 Aligned_cols=267 Identities=12% Similarity=0.009 Sum_probs=184.7
Q ss_pred CCCHHhHHHHHHHHHh-----cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHh
Q 011714 117 APNSWTFSIMIRCYCN-----KNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCK---------SGRLKEALEVLDQMG 182 (479)
Q Consensus 117 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~ 182 (479)
..+...|...+.+... .+++++|.+.|++..+.. +-+...|..+..++.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4556666666655322 234679999999999764 3356667666665542 245899999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhh
Q 011714 183 RIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVT 262 (479)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 262 (479)
+.+ +.+..++..+...+...|++++|...|++..+.+.. +...+..+...+...|++++|...++++.+.... +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 875 557888888989999999999999999999987532 5778888899999999999999999999987543 2333
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH-HHHh
Q 011714 263 FNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLL-RGLC 341 (479)
Q Consensus 263 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~ 341 (479)
+..++..+...|++++|+..++++.....+-+...+..+..++...|+.++|...+.++... .|+.......+ ..+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 34455567778999999999999876643324556777888889999999999999987654 34433333333 3333
Q ss_pred cccchhhccHHHHHHHHHHHHh-CCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 011714 342 MKSWEEKDLLEDAYQVFEKMTK-KVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEM 399 (479)
Q Consensus 342 ~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 399 (479)
..| +.+...++.+.+ ....+....+..++.++.-. .+.+..+ +++.+.
T Consensus 487 -----~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~-~~~~~~ 535 (553)
T PRK12370 487 -----QNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGE--AIAEKMW-NKFKNE 535 (553)
T ss_pred -----ccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhh--hHHHHHH-HHhhcc
Confidence 223 467766666543 12222333346666666633 3333333 666554
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=1.5e-10 Score=100.03 Aligned_cols=201 Identities=14% Similarity=0.092 Sum_probs=147.7
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 011714 119 NSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLK 198 (479)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 198 (479)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 35667777888888888888888888887653 4456777778888888888888888888887764 445667777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 011714 199 GLCYVGRVEEAYEMLMNVKNDGLK-PDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPM 277 (479)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 277 (479)
.+...|++++|.+.+++....... .....+..+..++...|++++|...+++..+.... +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 888888888888888888764222 23455666777788888888888888887775322 4556777778888888888
Q ss_pred hHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 278 KGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 278 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
+|...+++.... .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 888888887765 233556666667777777888888777766654
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=3.7e-11 Score=100.73 Aligned_cols=236 Identities=13% Similarity=0.081 Sum_probs=194.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011714 224 DVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLN 303 (479)
Q Consensus 224 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 303 (479)
|..--+.+..+|.+.|.+.+|.+.|+..++. .|-+.||..|-.+|.+..++..|+.++.+-.+. ++-++.....+.+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 3333467889999999999999999998876 456778899999999999999999999988876 3445555567788
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC
Q 011714 304 GLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKG 383 (479)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (479)
.+-..++.+.|.++|+...+.. ..+......+...+. -.++.+.|+..|+++.+.|.. ++..|+.+.-+|...
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yf-----Y~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~ya 371 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYF-----YDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYA 371 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-Cccceeeeeeeeccc-----cCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhh
Confidence 8889999999999999988753 223333333333333 448999999999999999887 889999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHH
Q 011714 384 KKTDEALIHLHHAIEMGHIPR--TITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACA 461 (479)
Q Consensus 384 g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 461 (479)
++++-++.-|+++...--.|+ ..+|..+.......||+..|.+.|+.....+ ..+...++.|.-.-.+.|++++|..
T Consensus 372 qQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 372 QQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred cchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHH
Confidence 999999999999887644444 4678888888899999999999999988776 5577889999988899999999999
Q ss_pred HHHHHHhCC
Q 011714 462 LYGAALKQG 470 (479)
Q Consensus 462 ~~~~~~~~~ 470 (479)
+++.+....
T Consensus 451 ll~~A~s~~ 459 (478)
T KOG1129|consen 451 LLNAAKSVM 459 (478)
T ss_pred HHHHhhhhC
Confidence 999987643
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.42 E-value=1.5e-08 Score=95.03 Aligned_cols=389 Identities=12% Similarity=0.069 Sum_probs=255.8
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 011714 74 DSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHP 153 (479)
Q Consensus 74 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 153 (479)
..+.......+...|..+.-++...|+++.+.+.|++.... .-.....|..+...|...|.-..|..+++........|
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 44444445679999999999999999999999999997753 24456789999999999999999999998877543234
Q ss_pred -CHHHHHHHHHHHH-hcCChHHHHHHHHHHhhC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHH
Q 011714 154 -NVTTFTILVNSLC-KSGRLKEALEVLDQMGRI--GC--KPNIQTYNCLLKGLCYV-----------GRVEEAYEMLMNV 216 (479)
Q Consensus 154 -~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~ 216 (479)
+...+-..-..|. +-+.+++++++-.+.... +. ......|..+.-+|... ....++++.+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 3444443344444 356777877777766651 11 12234455555444332 1245678888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCCCH
Q 011714 217 KNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR-NCLPDK 295 (479)
Q Consensus 217 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~ 295 (479)
.+.+.. |......+.--|+..++.+.|.+...+..+.+...+...|..+.-.+.-.+++.+|+.+.+..... |. |.
T Consensus 471 v~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~ 547 (799)
T KOG4162|consen 471 VQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NH 547 (799)
T ss_pred HhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hh
Confidence 776533 333333344457778899999999999999866678889999999999999999999998876543 11 11
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHH---------------------------------------------------Hc
Q 011714 296 ISYSTLLNGLLKWGKIRPAVSIFKEMV---------------------------------------------------RF 324 (479)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------------------------------------------~~ 324 (479)
.....-+..-...++.+++......++ ..
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 000000111111122222211111110 00
Q ss_pred C---------C--CcCHHHHHH-HHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHH
Q 011714 325 G---------F--EVDERMMNS-LLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIH 392 (479)
Q Consensus 325 ~---------~--~~~~~~~~~-l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 392 (479)
+ . .|+...+.. .+.......+...+..+++...+.+.....+. ....|......+...|.+++|.+.
T Consensus 628 ~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~a 706 (799)
T KOG4162|consen 628 GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEA 706 (799)
T ss_pred ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHH
Confidence 0 0 011000000 00000000012445666777666666654433 456677777888889999999999
Q ss_pred HHHHHHcCCCCc-hHHHHHHHHHHHcCCCHHHHHH--HHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 393 LHHAIEMGHIPR-TITFNNVIQALCGEGKIDKALL--LLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 393 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
|..+... .|+ .....++..++.+.|+..-|.. ++..+.+.+ +.+...|..++..+.+.|+.+.|.+.|..+++.
T Consensus 707 f~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 707 FLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 9988874 444 5678899999999999888887 999999987 669999999999999999999999999999885
Q ss_pred C
Q 011714 470 G 470 (479)
Q Consensus 470 ~ 470 (479)
.
T Consensus 784 e 784 (799)
T KOG4162|consen 784 E 784 (799)
T ss_pred c
Confidence 3
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=3.8e-11 Score=100.67 Aligned_cols=228 Identities=14% Similarity=0.096 Sum_probs=108.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011714 89 NDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKS 168 (479)
Q Consensus 89 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (479)
+.+..+|.+.|.+.+|.+-|+...+. .|-+.||..|-..|.+..+...|+.++.+-.+. .+-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 34445555555555555555544433 344445555555555555555555555554433 222333333444444445
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 011714 169 GRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELL 248 (479)
Q Consensus 169 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 248 (479)
++.++|.++|+...+.. +.++.....+...|.-.++++-|+.+|+.+.+.|+. +...|+.+.-+|.-.++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 55555555555554432 233444444444455555555555555555555543 4445555555555555555555555
Q ss_pred HHHHHCCCCCC--HhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011714 249 NEAIERGVTPN--VVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMV 322 (479)
Q Consensus 249 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (479)
++....-..|+ ...|..+.......|++..|.+.|+-...++.. ....++.|.-.-.+.|++++|..++....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 54444322121 223444444444555555555555544443321 33444444444445555555555554443
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.40 E-value=1.8e-10 Score=108.92 Aligned_cols=251 Identities=15% Similarity=0.116 Sum_probs=162.9
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 011714 71 DIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNG 150 (479)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (479)
+++-.+...|+.|+..+|..+|..|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34556677889999999999999999999999888 8888887777888889999999988888887765
Q ss_pred CCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHh----hCCCC-CCHHH-------------HHHHHHHHHhcCCHHHH
Q 011714 151 YHPNVTTFTILVNSLCKSGRLKE---ALEVLDQMG----RIGCK-PNIQT-------------YNCLLKGLCYVGRVEEA 209 (479)
Q Consensus 151 ~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~----~~~~~-~~~~~-------------~~~l~~~~~~~~~~~~a 209 (479)
.|.+.+|..|..+|...||+.. +.+.+..+. ..|+- |.... -...+......|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5788899999999999998654 323222221 11211 11111 01222333334444555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 210 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR 289 (479)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (479)
++++..+...... . ++..+++-+.... ....++........-.|+..+|..++.+-.-.|+.+.|..++..|.+.
T Consensus 159 lkll~~~Pvsa~~-~--p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWN-A--PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHHhhCCccccc-c--hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 5554443322111 0 1111233333322 223333333222211477788888888888888888888888888888
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh
Q 011714 290 NCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLC 341 (479)
Q Consensus 290 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (479)
|++.+.+-|..++-+ .++...+..+++-|.+.|+.|+..|+...+..+.
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l 282 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQL 282 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhh
Confidence 888777777777654 7777777888888888888888888777666654
No 63
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.40 E-value=4.8e-11 Score=112.67 Aligned_cols=278 Identities=14% Similarity=0.127 Sum_probs=181.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011714 141 KVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDG 220 (479)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 220 (479)
.++-.+...|+.|+..+|..+|.-||..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45566777788888888888888888888888887 8877776666777788888888888877776665
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHh-CCCCCCHhHHH
Q 011714 221 LKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKK-RNCLPDKISYS 299 (479)
Q Consensus 221 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~ 299 (479)
.|...||..|..+|...||... |+...+ ....+...+...|.-.....++..+.- .+.-||..+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n-- 144 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN-- 144 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH--
Confidence 5677888888888888888765 222222 122334455556655555555544321 223344433
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011714 300 TLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRT 379 (479)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (479)
.+.-....|-++.+.+++..+......- .+..+++-.. .....+++-..+.+.... .|++.+|..++.+
T Consensus 145 -~illlv~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv----~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~ 213 (1088)
T KOG4318|consen 145 -AILLLVLEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNV----VDNTPVEKLLNMCKSLVE---APTSETLHAVLKR 213 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHhhCCcccccc---hHHHHHHHhc----cCCchHHHHHHHHHHhhc---CCChHHHHHHHHH
Confidence 2333445566666666665543221111 1111233222 122223333333333322 5678888888888
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhH
Q 011714 380 LGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYD 458 (479)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 458 (479)
-...|+.+.|..++.+|.+.|++.+..-|..|+-+ .++..-+..+++.|.+.|+.|+..|+...+-.+.+.|....
T Consensus 214 alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~ 289 (1088)
T KOG4318|consen 214 ALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKY 289 (1088)
T ss_pred HHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhh
Confidence 88899999999999999988888888877777755 77888888888888888888998888877777766655433
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.39 E-value=3.1e-08 Score=91.11 Aligned_cols=393 Identities=15% Similarity=0.125 Sum_probs=211.3
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHH
Q 011714 62 KASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARK 141 (479)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 141 (479)
.-|+.++|....+.-.+.++. +.+.|..+.-.+....++++|++.|..+...+ +.|...+.-+.-.-++.++++....
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred cccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 345556666665555554443 56666666666666666777777777666655 5556666666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHH
Q 011714 142 VIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIG-CKPNIQTYNCLL------KGLCYVGRVEEAYEMLM 214 (479)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~ 214 (479)
....+.+.. +-....|..+..++.-.|+...|..+++...+.. -.|+...+.... ....+.|..++|++.+.
T Consensus 131 tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 131 TRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 666655542 2344556666666666677777777666665543 234444443222 22345566666666555
Q ss_pred HHHHCCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhcCChhhHH-HHHHHHHhCCC
Q 011714 215 NVKNDGLKPDVYTY-TAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFN-TLFNGYCKEGTPMKGV-GLLKLMKKRNC 291 (479)
Q Consensus 215 ~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~-~~~~~~~~~~~ 291 (479)
.-... ..|...+ ..-...+.+.+++++|..++..++... ||..-|. .+..++.+..+.-+++ .+|....+.-
T Consensus 210 ~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y- 284 (700)
T KOG1156|consen 210 DNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY- 284 (700)
T ss_pred hhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-
Confidence 44332 1122222 233445566677777777777766652 3443333 3333333233333333 4444433321
Q ss_pred CCCHhHHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHH-HHHHHHHHHhCC----
Q 011714 292 LPDKISYSTL-LNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLED-AYQVFEKMTKKV---- 365 (479)
Q Consensus 292 ~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-a~~~~~~~~~~~---- 365 (479)
|....-..+ +.......-.+....++..+.+.|+++--..+.++..-- .+..-+++ +..+...+...+
T Consensus 285 -~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p-----~k~~~le~Lvt~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 285 -PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDP-----EKVAFLEKLVTSYQHSLSGTGMFNF 358 (700)
T ss_pred -cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhch-----hHhHHHHHHHHHHHhhcccccCCCc
Confidence 111000000 111111111222334445555666543222222221110 00000011 111111111110
Q ss_pred ------CCCChh--hHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCch-HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 011714 366 ------SVTDPG--TYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRT-ITFNNVIQALCGEGKIDKALLLLFLMYEHAK 436 (479)
Q Consensus 366 ------~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 436 (479)
..|... ++-.++..+-..|+++.|..+++.+.+. .|+. ..|..=.+.+...|++++|..++++..+.+
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD- 435 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD- 435 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-
Confidence 134443 3445678888999999999999988774 5553 345555578899999999999999999886
Q ss_pred CCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCC
Q 011714 437 IPSRTSYDMLITKLDQLEKSYDACALYGAALKQGV 471 (479)
Q Consensus 437 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 471 (479)
.+|...=..-++-..++++.++|.++.-..-+.|.
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 44555444566667888999999998888777664
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.34 E-value=8.8e-10 Score=102.13 Aligned_cols=238 Identities=19% Similarity=0.093 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----CC-CCCHh-hHHHHHHHHHhcCChhhHHHHHHHHHhC-----CC-
Q 011714 225 VYTYTAVMDGFCKVGRSNEAMELLNEAIER-----GV-TPNVV-TFNTLFNGYCKEGTPMKGVGLLKLMKKR-----NC- 291 (479)
Q Consensus 225 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~- 291 (479)
..+...+...|...|+++.|+.+++..++. |. .|.+. ..+.+...|...+++++|+.+|+++..- |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 455566778888888888888888776653 21 12332 2334667788888888888888887542 21
Q ss_pred CCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCcCHHHHH-HHHHHHhcccchhhccHHHHHHHHHHHHh
Q 011714 292 LPD-KISYSTLLNGLLKWGKIRPAVSIFKEMVRF-----G-FEVDERMMN-SLLRGLCMKSWEEKDLLEDAYQVFEKMTK 363 (479)
Q Consensus 292 ~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~~~~~~ 363 (479)
.|. ..+++.|..+|.+.|++++|...+++..+. + ..|...... .+...+ ...+.+++|..++....+
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~-----~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAIL-----QSMNEYEEAKKLLQKALK 353 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHH-----HHhcchhHHHHHHHHHHH
Confidence 122 356777778888899988888887776531 1 122222222 222222 255788888888876543
Q ss_pred C---CCCC----ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC----C--CC-chHHHHHHHHHHHcCCCHHHHHHHHH
Q 011714 364 K---VSVT----DPGTYGIVIRTLGKGKKTDEALIHLHHAIEMG----H--IP-RTITFNNVIQALCGEGKIDKALLLLF 429 (479)
Q Consensus 364 ~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (479)
. -+.+ -..+++.|...|...|++++|.+++++++... - .+ ....++.+...|.+.+.+++|.++|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 1 1111 23679999999999999999999999887541 1 11 24467888899999999999998888
Q ss_pred HHHh----CCC-CCC-HhhHHHHHHHHhccCCHhHHHHHHHHHH
Q 011714 430 LMYE----HAK-IPS-RTSYDMLITKLDQLEKSYDACALYGAAL 467 (479)
Q Consensus 430 ~~~~----~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (479)
+... .|. .|+ ..+|..|+..|..+|++++|.++.+..+
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 7553 222 233 4679999999999999999999998876
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.34 E-value=1.3e-07 Score=87.17 Aligned_cols=402 Identities=14% Similarity=0.089 Sum_probs=271.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 011714 52 LQAQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYC 131 (479)
Q Consensus 52 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (479)
..+++.++....+..+..+...+.+.+.. +-...+.....-.+...|+.++|........+.. ..+.+.|+.+.-.+.
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHh
Confidence 45667777777888899999999888743 3356666666677777899999999888877654 566788999999999
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011714 132 NKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYE 211 (479)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 211 (479)
...++++|++.|......+ +.|...|.-+.-.-++.|+++.....-.++.+.. +.....|..+..++.-.|+...|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875 5578888888888888899999888888887763 3345678889999999999999999
Q ss_pred HHHHHHHCC-CCCCHHHHHHHH------HHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHH
Q 011714 212 MLMNVKNDG-LKPDVYTYTAVM------DGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLK 284 (479)
Q Consensus 212 ~~~~~~~~~-~~~~~~~~~~li------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 284 (479)
++++..+.. -.|+...+.... ......|..++|.+.+..-... +......-.+-...+.+.+++++|..++.
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 999998764 346666554333 2345678888888887655432 22123333455677889999999999999
Q ss_pred HHHhCCCCCCHhHHHH-HHHHHHhcCChHHHH-HHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHH
Q 011714 285 LMKKRNCLPDKISYST-LLNGLLKWGKIRPAV-SIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMT 362 (479)
Q Consensus 285 ~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~ 362 (479)
.++... ||..-|.. +..++.+..+..++. .+|....+.- |.......+--... ....-.+..-.++....
T Consensus 244 ~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl----~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 244 RLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVL----NGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHh----CcchhHHHHHHHHHHHh
Confidence 999875 56555554 444444333333333 6666665431 11111111111111 11233344445556666
Q ss_pred hCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHc----C----------CCCchHHH--HHHHHHHHcCCCHHHHHH
Q 011714 363 KKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEM----G----------HIPRTITF--NNVIQALCGEGKIDKALL 426 (479)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~----------~~p~~~~~--~~l~~~~~~~g~~~~a~~ 426 (479)
++|.+ .++..+...|-.-...+-..++.-.+... | -+|....| ..++..+-..|+++.|..
T Consensus 316 ~Kg~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 316 SKGVP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred hcCCC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 66654 34555555554433222111221111111 1 13454444 456678889999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 427 LLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
+++..+++. +--+..|..-.+.+..+|.+++|..+++++.+..
T Consensus 393 yId~AIdHT-PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 393 YIDLAIDHT-PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred HHHHHhccC-chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 999999874 2234556666788999999999999999987753
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.34 E-value=7.4e-09 Score=97.26 Aligned_cols=293 Identities=17% Similarity=0.088 Sum_probs=161.8
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-----
Q 011714 163 NSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK----- 237 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----- 237 (479)
..+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.++. +..-|..+..+..-
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence 3445566666666666554332 2222334445556666666666666666666665421 33333333333311
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh-hhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 011714 238 VGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTP-MKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVS 316 (479)
Q Consensus 238 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 316 (479)
..+.+....+++++.+.- |.......+.-.+.....+ ..+..++..+..+|++ .+|..+-..|....+..-...
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 123455566666655442 2222222222222221122 2344455555666654 234444444444444333444
Q ss_pred HHHHHHHc----C----------CCcCHHHH--HHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011714 317 IFKEMVRF----G----------FEVDERMM--NSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTL 380 (479)
Q Consensus 317 ~~~~~~~~----~----------~~~~~~~~--~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (479)
++...... + -.|....+ ..+... +...|++++|+..++......+. .+..|..-.+.+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqh-----yd~~g~~~~Al~~Id~aI~htPt-~~ely~~Karil 238 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQH-----YDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARIL 238 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHH-----HHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHH
Confidence 44443321 1 11222111 112222 24668888888888888877654 467788888888
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHh------h--HHHHHHHHhc
Q 011714 381 GKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRT------S--YDMLITKLDQ 452 (479)
Q Consensus 381 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~--~~~l~~~~~~ 452 (479)
-+.|++.+|.+.++.+...+.. |..+-+..+..+.++|+.++|.+.+....+.+..|... . ....+.+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888776543 66666666777788888888888888777665422211 1 1345567888
Q ss_pred cCCHhHHHHHHHHHHhC
Q 011714 453 LEKSYDACALYGAALKQ 469 (479)
Q Consensus 453 ~g~~~~A~~~~~~~~~~ 469 (479)
.|++..|+..|....+.
T Consensus 318 ~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLKH 334 (517)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 88888888887776653
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.33 E-value=1.5e-08 Score=95.16 Aligned_cols=290 Identities=14% Similarity=0.085 Sum_probs=140.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----
Q 011714 94 ALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKS----- 168 (479)
Q Consensus 94 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 168 (479)
.+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ |.|..-|..+..+..-.
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccc
Confidence 344556666666666553332 12223344455556666666666666666666554 22333334444433111
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 011714 169 GRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRV-EEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMEL 247 (479)
Q Consensus 169 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 247 (479)
.+.+...++|+++...- |.......+.-.+.....+ ..+..++..+...|++ .+|+.+-..|....+.+-..++
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 23455555666555432 3222222222222221122 2234444445555543 2333444444433333333444
Q ss_pred HHHHHHC--------------CCCCCHh--hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCh
Q 011714 248 LNEAIER--------------GVTPNVV--TFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKI 311 (479)
Q Consensus 248 ~~~~~~~--------------~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (479)
+...... .-+|+.. ++..+...|-..|++++|++++++.+.+... .+..|..-.+.+-+.|++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCH
Confidence 4333221 0123332 3344455666667777777777766665321 255566666666677777
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChh--------hHHHHHHHHhcC
Q 011714 312 RPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPG--------TYGIVIRTLGKG 383 (479)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~ 383 (479)
.+|.+.++.....+.. |..+-+.....+. +.|++++|.+++....+.+..|-.. -....+.+|.+.
T Consensus 245 ~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~L-----Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 245 KEAAEAMDEARELDLA-DRYINSKCAKYLL-----RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HHHHHHHHHHHhCChh-hHHHHHHHHHHHH-----HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666654321 3333333333332 5567777777766665554322111 113345667777
Q ss_pred CCHHHHHHHHHHHH
Q 011714 384 KKTDEALIHLHHAI 397 (479)
Q Consensus 384 g~~~~A~~~~~~~~ 397 (479)
|++..|++.|..+.
T Consensus 319 ~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 319 GDYGLALKRFHAVL 332 (517)
T ss_pred hhHHHHHHHHHHHH
Confidence 77777777665544
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=3.7e-08 Score=89.21 Aligned_cols=284 Identities=14% Similarity=0.114 Sum_probs=213.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011714 152 HPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAV 231 (479)
Q Consensus 152 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 231 (479)
..+......-..-+...+++.+..++.+...+.. ++....+..-|.++...|+..+...+=.++.+.- +-...+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 4466666666777788899999999999998875 6777778788889999999999888888888763 3367889998
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcC
Q 011714 232 MDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR--NCLPDKISYSTLLNGLLKWG 309 (479)
Q Consensus 232 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 309 (479)
.-.|...|+..+|.+.|.+....... -...|-.+...|+..|..++|+..+...-+. |.. -+..| +.--|.+.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~ 394 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTN 394 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhc
Confidence 88888899999999999988665322 2447889999999999999999988877553 211 12223 333577889
Q ss_pred ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCC--C---C-CChhhHHHHHHHHhcC
Q 011714 310 KIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKV--S---V-TDPGTYGIVIRTLGKG 383 (479)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~~~l~~~~~~~ 383 (479)
+.+.|.+.|.+.... .|+......-+.... -..+.+.+|...|+.....- . . -...+++.++.++.+.
T Consensus 395 n~kLAe~Ff~~A~ai--~P~Dplv~~Elgvva----y~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAI--APSDPLVLHELGVVA----YTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred cHHHHHHHHHHHHhc--CCCcchhhhhhhhee----ehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 999999999988754 444433332222222 14588899999998766211 1 1 1234688999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011714 384 KKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKL 450 (479)
Q Consensus 384 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (479)
+.+++|+..+++.+... +.+..++.++.-.|...|+++.|+..|.+..-. .|+-.+-..++..+
T Consensus 469 ~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLA 532 (611)
T ss_pred hhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 99999999999998863 447889999999999999999999999998876 46655555555433
No 70
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=8.9e-12 Score=77.48 Aligned_cols=49 Identities=31% Similarity=0.576 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYC 131 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (479)
||+.+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666665
No 71
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=9.7e-12 Score=77.30 Aligned_cols=47 Identities=40% Similarity=0.827 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 011714 154 NVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGL 200 (479)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (479)
|..+||.+|++|++.|++++|.++|++|.+.|++||..||+.++++|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444433
No 72
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.29 E-value=4.2e-07 Score=83.80 Aligned_cols=228 Identities=15% Similarity=0.156 Sum_probs=133.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC------HhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC---HhHHHHHHHHHHhc
Q 011714 238 VGRSNEAMELLNEAIERGVTPN------VVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPD---KISYSTLLNGLLKW 308 (479)
Q Consensus 238 ~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 308 (479)
.|+..+-...+.++++. +.|. ...|..+...|-.+|+.+.|..+|++..+...+-- ..+|......-.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 45566667777777654 2221 23577788888889999999999988877644321 23455555555667
Q ss_pred CChHHHHHHHHHHHHcCC-----------CcCHHHHHHHHH-HHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHH
Q 011714 309 GKIRPAVSIFKEMVRFGF-----------EVDERMMNSLLR-GLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIV 376 (479)
Q Consensus 309 ~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 376 (479)
.+++.|.++.+......- ++....++++.- .+..-..+..|-++....+|+++....+. ++......
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~Ny 517 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINY 517 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 778888888777653211 111112221110 00000013457788888888888876554 44444444
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCch-HHHHHHHHHHH---cCCCHHHHHHHHHHHHhCCCCCCH-hhHHHHH-HHH
Q 011714 377 IRTLGKGKKTDEALIHLHHAIEMGHIPRT-ITFNNVIQALC---GEGKIDKALLLLFLMYEHAKIPSR-TSYDMLI-TKL 450 (479)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~-~~~ 450 (479)
...+-.+.-++++.+.+++-+..-..|+. ..|+..+.-+. .....+.|..+|++..+. .+|.. .+.-.+. ..-
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~-Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG-CPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHH
Confidence 44555667788888888765544223443 45666665443 244688899999988884 34433 2322222 222
Q ss_pred hccCCHhHHHHHHHHHHh
Q 011714 451 DQLEKSYDACALYGAALK 468 (479)
Q Consensus 451 ~~~g~~~~A~~~~~~~~~ 468 (479)
.+.|-...|+++|+++-.
T Consensus 597 Ee~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATS 614 (835)
T ss_pred HHhhHHHHHHHHHHHHHh
Confidence 345778888888888643
No 73
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.28 E-value=4.6e-07 Score=83.54 Aligned_cols=398 Identities=12% Similarity=0.085 Sum_probs=234.7
Q ss_pred hcCChhhHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 011714 62 KASPLKERIDIFDSIKK-DGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEAR 140 (479)
Q Consensus 62 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (479)
+++.+..-...|+.... ..+.....+|...+......+-++-++.+|++-.+. ++..-+-.|..++..+++++|.
T Consensus 114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHH
Confidence 45555555555555432 222333455666666666666666677777666643 2333566666667777777777
Q ss_pred HHHHHHHhC------CCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 011714 141 KVIDCMFDN------GYHPNVTTFTILVNSLCKSGRLKE---ALEVLDQMGRIGCKPNI--QTYNCLLKGLCYVGRVEEA 209 (479)
Q Consensus 141 ~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a 209 (479)
+.+...+.. ..+.+-..|..+-+..+++-+.-. ...+++.+... -+|. ..|.+|..-|.+.|.+++|
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~eka 267 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKA 267 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHH
Confidence 776666522 113344555555555554433222 22333333322 2332 4678888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccC----------------------CHHHHHHHHHHHHHCCC-----------
Q 011714 210 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVG----------------------RSNEAMELLNEAIERGV----------- 256 (479)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----------------------~~~~a~~~~~~~~~~~~----------- 256 (479)
..+|++.... ..+..-|..+.++|..-. +++-.+.-|+.+...+.
T Consensus 268 rDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn 345 (835)
T KOG2047|consen 268 RDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQN 345 (835)
T ss_pred HHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcC
Confidence 8888887765 224555556666654321 11222223333332210
Q ss_pred CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH
Q 011714 257 TPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLP------DKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDE 330 (479)
Q Consensus 257 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 330 (479)
+-++..|..-+. ...|+..+.+..+.+..+. +.| -...|..+.+.|-..|+.+.|..+|++..+.... ..
T Consensus 346 ~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~-~v 421 (835)
T KOG2047|consen 346 PHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK-TV 421 (835)
T ss_pred CccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc-ch
Confidence 011222222222 2245566666677666553 111 2345777888899999999999999998865433 22
Q ss_pred HHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCC----------C-------ChhhHHHHHHHHhcCCCHHHHHHHH
Q 011714 331 RMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSV----------T-------DPGTYGIVIRTLGKGKKTDEALIHL 393 (479)
Q Consensus 331 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~l~~~~~~~g~~~~A~~~~ 393 (479)
.-+..+-..++ ....+..+++.|+.+.+........ | +...|...++..-..|-++....++
T Consensus 422 ~dLa~vw~~wa-emElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 422 EDLAEVWCAWA-EMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred HHHHHHHHHHH-HHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 22223333332 1112567788888888776432111 1 2345677777777788899999999
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHhc---cCCHhHHHHHHHHHHhC
Q 011714 394 HHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSR-TSYDMLITKLDQ---LEKSYDACALYGAALKQ 469 (479)
Q Consensus 394 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 469 (479)
+++.+..+. ++.+.......+-...-++++.+++++-+.....|+. ..|+..+..+.+ .-+.+.|..+|+++++
T Consensus 501 driidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~- 578 (835)
T KOG2047|consen 501 DRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD- 578 (835)
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-
Confidence 999987665 4444444444556677789999999988887666665 567777766554 2468999999999999
Q ss_pred CCCCC
Q 011714 470 GVIPQ 474 (479)
Q Consensus 470 ~~~p~ 474 (479)
|..|.
T Consensus 579 ~Cpp~ 583 (835)
T KOG2047|consen 579 GCPPE 583 (835)
T ss_pred cCCHH
Confidence 55554
No 74
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=2.3e-07 Score=79.39 Aligned_cols=366 Identities=11% Similarity=0.091 Sum_probs=205.3
Q ss_pred hHHHHHHHHHH--hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 011714 51 SLQAQRFVDRI--KASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIR 128 (479)
Q Consensus 51 ~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 128 (479)
....+.++..+ .-|+.++|+.++..+...+ .++...+-.|.-...-.|.+.+|..+-.... .++-.-..++.
T Consensus 56 E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfh 129 (557)
T KOG3785|consen 56 EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFH 129 (557)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHH
Confidence 34566666653 6799999999999887754 4567777777777788899999988766543 23344455556
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH-HHHHhcCCHH
Q 011714 129 CYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLL-KGLCYVGRVE 207 (479)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~ 207 (479)
..-+.++-++-..+.+.+... ..---+|.+.....-.+++|+++|.+.... .|.-...|.-+ -+|.+..-++
T Consensus 130 lahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYyd 202 (557)
T KOG3785|consen 130 LAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYD 202 (557)
T ss_pred HHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhh
Confidence 666777777766666665432 223333444444445678888888887765 35555555433 3456666677
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cCC---------------------------------HHHHHHHHHHHH
Q 011714 208 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCK--VGR---------------------------------SNEAMELLNEAI 252 (479)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~---------------------------------~~~a~~~~~~~~ 252 (479)
-+.++++-..+.- +-++...|..+....+ .|+ -+.|++++-.+.
T Consensus 203 vsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~ 281 (557)
T KOG3785|consen 203 VSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLM 281 (557)
T ss_pred hHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHH
Confidence 7777777666541 2123333322211111 111 122222222222
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCC-------hHHHHHHHHHHHHcC
Q 011714 253 ERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGK-------IRPAVSIFKEMVRFG 325 (479)
Q Consensus 253 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~ 325 (479)
+. .|. .--.|+-.|.+.++..+|..+.+++... .|-......+. ....|+ .+-|.+.|...-.++
T Consensus 282 ~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa 353 (557)
T KOG3785|consen 282 KH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESA 353 (557)
T ss_pred hh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccc
Confidence 21 111 2234555667778888888776655321 22222222222 122222 233334443332222
Q ss_pred CCcC--------------------HHHHHHHHHHHhc----------ccchhhccHHHHHHHHHHHHhCCCCCChhhH-H
Q 011714 326 FEVD--------------------ERMMNSLLRGLCM----------KSWEEKDLLEDAYQVFEKMTKKVSVTDPGTY-G 374 (479)
Q Consensus 326 ~~~~--------------------~~~~~~l~~~~~~----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~ 374 (479)
...| ..+|..-+.+|.. ++....|.+.+|.++|-.+...... |..+| .
T Consensus 354 ~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s 432 (557)
T KOG3785|consen 354 LECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKS 432 (557)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHH
Confidence 2111 1111111111110 0012458889999999888766555 44444 5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHH-HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 011714 375 IVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFN-NVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYD 444 (479)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 444 (479)
.+.++|.+.+.++.|.+++-++. .+.+..+.. .+..-|.+++.+=-|-+.|+.+...+ |++..|.
T Consensus 433 ~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD--P~pEnWe 498 (557)
T KOG3785|consen 433 MLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD--PTPENWE 498 (557)
T ss_pred HHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC--CCccccC
Confidence 66789999999999988775442 223334433 34467889999999999999887764 6777664
No 75
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.2e-08 Score=89.16 Aligned_cols=389 Identities=14% Similarity=0.060 Sum_probs=246.0
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCCh
Q 011714 58 VDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN-SWTFSIMIRCYCNKNDF 136 (479)
Q Consensus 58 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 136 (479)
...+..++.+.|+..|......++. |...|.-=..+++..|++++|++=-.+..+. .|+ ...|.....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 4457789999999999888766655 7788888889999999999998877776655 455 67899999999999999
Q ss_pred hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH---HHHHHHHhhC---CCCCCHHHHHHHHHHHHhc-------
Q 011714 137 FEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEA---LEVLDQMGRI---GCKPNIQTYNCLLKGLCYV------- 203 (479)
Q Consensus 137 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a---~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~------- 203 (479)
++|+..|.+-++.. +.+...++-+..++.......+. -.++..+... ........|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999988764 44667777787777211000000 0111111100 0000111222332222111
Q ss_pred ---CCHHHHHHHHHHH-----HHCC-------CCC----------------------CHHHHHHHHHHHHccCCHHHHHH
Q 011714 204 ---GRVEEAYEMLMNV-----KNDG-------LKP----------------------DVYTYTAVMDGFCKVGRSNEAME 246 (479)
Q Consensus 204 ---~~~~~a~~~~~~~-----~~~~-------~~~----------------------~~~~~~~li~~~~~~~~~~~a~~ 246 (479)
.++..+...+... ...+ ..| -..-...+.++..+..+++.|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 1111121111100 0000 011 01123556677777888999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHH-------HHHHhcCChHHHHHHHH
Q 011714 247 LLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLL-------NGLLKWGKIRPAVSIFK 319 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~a~~~~~ 319 (479)
.+...++.. -+..-++....+|...|.+.++....+...+.|.. ...-|+.+. .++.+.++++.+...|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 998888764 35666777788899999988888887777666533 223333333 35566778888888888
Q ss_pred HHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 011714 320 EMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEM 399 (479)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 399 (479)
+.+..-..|+... +....+++....+...-.++.. ..--..-...+.+.|++..|++.|.+++..
T Consensus 323 kaLte~Rt~~~ls--------------~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 323 KALTEHRTPDLLS--------------KLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred HHhhhhcCHHHHH--------------HHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 8765433333211 2244455555544443332221 111222366677888888888888888876
Q ss_pred CCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 400 GHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 400 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
. +-|...|..-.-+|.+.|.+..|+.-.+..++.+ ++....|..=+.++....++++|.+.|++.++..
T Consensus 388 ~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 388 D-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred C-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4 3367788888888888888888888888888775 4455667666777777888888888888887754
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.4e-07 Score=79.91 Aligned_cols=299 Identities=12% Similarity=0.053 Sum_probs=190.2
Q ss_pred HHHHHHHHHHh--cCChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 011714 157 TFTILVNSLCK--SGRLKEALEVLDQMGRI-GCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDV-YTYTAVM 232 (479)
Q Consensus 157 ~~~~li~~~~~--~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li 232 (479)
+....+.+++. .++-..+...+--+... -++-|+.....+...+...|+.++|+-.|++....+ |+. .......
T Consensus 196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya 273 (564)
T KOG1174|consen 196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYA 273 (564)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHH
Confidence 33334444433 34444444444333322 245577778888888888888888888888877542 221 1222223
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChH
Q 011714 233 DGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIR 312 (479)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 312 (479)
-.+...|+++....+...+.... +-....|-.-........++..|+.+-++.++.+.. +...|..-...+...|+.+
T Consensus 274 ~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~ 351 (564)
T KOG1174|consen 274 VLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHT 351 (564)
T ss_pred HHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchH
Confidence 33456777777777776665431 123334444455556677888888888877765422 3445555556677888888
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHH-HHHh-cCCCHHHHH
Q 011714 313 PAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVI-RTLG-KGKKTDEAL 390 (479)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~ 390 (479)
+|.-.|+...... +.+...|..++..|. ..|.+.+|...-+...+.-. .+..+...+. ..+. ...--++|.
T Consensus 352 ~A~IaFR~Aq~La-p~rL~~Y~GL~hsYL-----A~~~~kEA~~~An~~~~~~~-~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 352 QAVIAFRTAQMLA-PYRLEIYRGLFHSYL-----AQKRFKEANALANWTIRLFQ-NSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred HHHHHHHHHHhcc-hhhHHHHHHHHHHHH-----hhchHHHHHHHHHHHHHHhh-cchhhhhhhcceeeccCchhHHHHH
Confidence 8888888876542 246678888888887 55777777766655443311 1344444442 2222 223357788
Q ss_pred HHHHHHHHcCCCCch-HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 391 IHLHHAIEMGHIPRT-ITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 391 ~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
+++++.+. +.|+. ...+.+...|...|..++++.++++.... .||....+.|.+.+...+.+++|++.|..+++.
T Consensus 425 kf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 425 KFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 88877665 34553 34566667788888899999998888765 478888888888888888899999888888774
Q ss_pred C
Q 011714 470 G 470 (479)
Q Consensus 470 ~ 470 (479)
+
T Consensus 501 d 501 (564)
T KOG1174|consen 501 D 501 (564)
T ss_pred C
Confidence 4
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=5.8e-08 Score=84.57 Aligned_cols=314 Identities=12% Similarity=0.064 Sum_probs=220.4
Q ss_pred CCHHhHHHHHHHHH--hcCChhhHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 011714 118 PNSWTFSIMIRCYC--NKNDFFEARKVIDCMFDN-GYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYN 194 (479)
Q Consensus 118 ~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (479)
|+......-+.+++ ..++-..+...+-.+... -++.|+.....+..++...|+.++|+..|++....+ +-+.....
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD 270 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMD 270 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHH
Confidence 33333333343333 344444444444444322 356678889999999999999999999999988663 22333344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 011714 195 CLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEG 274 (479)
Q Consensus 195 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 274 (479)
.....+.+.|+.+....+...+.... .-+...|..-........+++.|+.+-++.++.... ++..+-.-...+...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhcc
Confidence 44555678899999888888876542 113333333344445667889999998888876433 5555655567788999
Q ss_pred ChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH-HHHhcccchhhccHHH
Q 011714 275 TPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLL-RGLCMKSWEEKDLLED 353 (479)
Q Consensus 275 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~ 353 (479)
++++|.--|+..+... +.+..+|..|+.+|...|.+.+|...-....+. +..+..++..+- ..+. .....-++
T Consensus 349 R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~----~dp~~rEK 422 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLF----PDPRMREK 422 (564)
T ss_pred chHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeec----cCchhHHH
Confidence 9999999999887753 246889999999999999999998877765543 222333333331 1221 24455688
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011714 354 AYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYE 433 (479)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (479)
|..++++.....+. -....+.+...+...|+.+.++.++++.+. ..||....+.|.+.+...+.+.+|+..|.....
T Consensus 423 AKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 423 AKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99999887765443 335677888899999999999999999887 468999999999999999999999999999988
Q ss_pred CCCCCCHhhHH
Q 011714 434 HAKIPSRTSYD 444 (479)
Q Consensus 434 ~~~~~~~~~~~ 444 (479)
.+ +.+..+..
T Consensus 500 ~d-P~~~~sl~ 509 (564)
T KOG1174|consen 500 QD-PKSKRTLR 509 (564)
T ss_pred cC-ccchHHHH
Confidence 75 33444443
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.26 E-value=1.4e-08 Score=90.28 Aligned_cols=218 Identities=14% Similarity=0.030 Sum_probs=145.1
Q ss_pred CChhhHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 011714 64 SPLKERIDIFDSIKKDGT---NWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEAR 140 (479)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (479)
...+.++.-+.++..... .-....|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345666676766664322 1224567778888888999999999999988765 556788899999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011714 141 KVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDG 220 (479)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 220 (479)
..|+...+.. +-+..+|..+..++...|++++|.+.|++..+.. |+..........+...++.++|...+.+.....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999988764 3356778888888888999999999999888763 433222222223445678889988887655332
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---CC---CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 011714 221 LKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIER---GV---TPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN 290 (479)
Q Consensus 221 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (479)
.++...+ .+ .....|+...+ ..+..+.+. .+ +.....|..+...+.+.|++++|+..|++..+.+
T Consensus 196 -~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2232221 22 22334555443 244444321 11 0123467778888888888888888888887765
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=5.6e-09 Score=96.89 Aligned_cols=237 Identities=19% Similarity=0.178 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCHHh-HHHHHHHHHhcCChhhHHHHHHHHHhC-----C--C
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEASSY-----G-LAPNSWT-FSIMIRCYCNKNDFFEARKVIDCMFDN-----G--Y 151 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~ 151 (479)
.+...|...|...|+++.|+.++++..+. | ..|...+ .+.+...|...+++.+|..+|+++... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33444555666666666666666554432 1 0122221 223445555555655555555555421 1 0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC
Q 011714 152 HPNVTTFTILVNSLCKSGRLKEALEVLDQMGRI-----GC-KPNI-QTYNCLLKGLCYVGRVEEAYEMLMNVKND---GL 221 (479)
Q Consensus 152 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 221 (479)
+.-..+++.|..+|.+.|++++|...+++..+. |. .|.+ ..++.+...+...+++++|..++....+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 111234445555555556555555555443221 10 1111 12344444555555555555555543321 01
Q ss_pred CC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----C-CCC-CHhhHHHHHHHHHhcCChhhHHHHHHHHHh--
Q 011714 222 KP----DVYTYTAVMDGFCKVGRSNEAMELLNEAIER-----G-VTP-NVVTFNTLFNGYCKEGTPMKGVGLLKLMKK-- 288 (479)
Q Consensus 222 ~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 288 (479)
.+ -..+++.+...|.+.|++++|.+++++++.. | ..+ ....++.|...|.+.+++.+|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 11 1234555555555555555555555555432 0 011 122344455555555555555555544322
Q ss_pred --CCC-CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011714 289 --RNC-LP-DKISYSTLLNGLLKWGKIRPAVSIFKEMV 322 (479)
Q Consensus 289 --~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (479)
.|. .| ...+|..|...|...|+++.|.++...+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 111 11 12445555555555555555555555443
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.23 E-value=3.3e-08 Score=79.51 Aligned_cols=194 Identities=18% Similarity=0.085 Sum_probs=99.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 011714 125 IMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVG 204 (479)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 204 (479)
.|.-.|.+.|+...|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|.....+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 34444555555555555555555543 2234455555555555555555555555555443 334445555555555555
Q ss_pred CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHH
Q 011714 205 RVEEAYEMLMNVKNDG-LKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLL 283 (479)
Q Consensus 205 ~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 283 (479)
++++|...|++....- ......+|..+.-+..+.|+.+.|...|++.++.... ...+...+.....+.|++..|..++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHH
Confidence 5555555555554431 1112344555555555556666666666555554222 2334445555555556666666555
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011714 284 KLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMV 322 (479)
Q Consensus 284 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (479)
+.....+. ++..+....|+.-...|+.+.+.++=..+.
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 55555443 455555555555555555555555444444
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.22 E-value=3.3e-08 Score=87.91 Aligned_cols=219 Identities=17% Similarity=0.051 Sum_probs=158.7
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 011714 98 LNEQETAVKFFSEASSYG-LAPN--SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEA 174 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 174 (479)
.+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 346677888888877542 1222 4568888889999999999999999999875 45789999999999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 011714 175 LEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIER 254 (479)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 254 (479)
.+.|++..+.. +-+..+|..+..++...|++++|.+.++...+.. |+..........+...++.++|...|.+....
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999999864 3457788889999999999999999999998764 33222222233345677899999999776543
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC---CC--C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011714 255 GVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR---NC--L-PDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFG 325 (479)
Q Consensus 255 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 325 (479)
. .++...+ .......|+...+ ..+..+.+. .+ . .....|..+...+.+.|++++|...|++..+.+
T Consensus 195 ~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 2332222 2233345665544 344444421 11 1 123578889999999999999999999998764
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.18 E-value=5.8e-07 Score=83.06 Aligned_cols=202 Identities=14% Similarity=0.017 Sum_probs=94.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCCH--hHHHHHHHHH
Q 011714 229 TAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNC-LPDK--ISYSTLLNGL 305 (479)
Q Consensus 229 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~ 305 (479)
..+...+...|++++|...+++..+.... +...+..+..++...|++++|...+++...... .|+. ..|..+...+
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 34444555666666666666666654322 344555566666666666666666665554321 1121 2334455566
Q ss_pred HhcCChHHHHHHHHHHHHcCC-CcCHHHH-H--HHHHHHhccc-chhhccHHHHHHHHHHHHhCCC-CCChhhHHHHHHH
Q 011714 306 LKWGKIRPAVSIFKEMVRFGF-EVDERMM-N--SLLRGLCMKS-WEEKDLLEDAYQVFEKMTKKVS-VTDPGTYGIVIRT 379 (479)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~ 379 (479)
...|++++|..++++...... .+..... . .++..+...+ ......++...... ..... ............+
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~---~~~~~~~~~~~~~~~~a~~ 273 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYA---AWHFPDHGLAFNDLHAALA 273 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHH---HhhcCcccchHHHHHHHHH
Confidence 666666666666666543221 1111111 1 1111111000 00001111111111 11100 1111222346667
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCC--------chHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 011714 380 LGKGKKTDEALIHLHHAIEMGHIP--------RTITFNNVIQALCGEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~p--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (479)
+...|+.++|..+++.+......+ ..........++...|++++|.+.+......
T Consensus 274 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 274 LAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778888888888888776532110 0111122223455778888888887776643
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.17 E-value=5.5e-08 Score=78.22 Aligned_cols=198 Identities=13% Similarity=0.016 Sum_probs=132.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011714 88 FNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCK 167 (479)
Q Consensus 88 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 167 (479)
...|.-.|...|++..|..-+++..+.. +.+..+|..+...|-+.|+.+.|.+.|++..+.. +.+..+.|...-.+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3456667777777777777777777664 4456677777777777777777777777777654 3466677777777777
Q ss_pred cCChHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 011714 168 SGRLKEALEVLDQMGRIG-CKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAME 246 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 246 (479)
.|++++|...|++....- ..--..+|..+.-+..+.|+++.|...|++.++.... ...+...+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 777777777777766532 1112346666777777777777777777777665322 34455566667777777777777
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 247 LLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR 289 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (479)
+++.....+. ++..+.-..|..-...|+.+.+-++=.++.+.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7777666654 56666666667777777777666665555443
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=5.8e-06 Score=75.81 Aligned_cols=127 Identities=16% Similarity=0.135 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 011714 52 LQAQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYC 131 (479)
Q Consensus 52 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (479)
..+..+-.....+..++|+...+.+...++ -+...+..=+-++.+.+++++|+.+.+.-... ..+..-+---..+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~p-dd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVP-DDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCC-CcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence 444555556677889999999999987763 47788888888999999999998555432210 111111112233444
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 011714 132 NKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIG 185 (479)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 185 (479)
+.+..++|+..++... +.+..+...-...+.+.|++++|+++|+.+.+.+
T Consensus 91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 7888999998888332 2244466666777888999999999999987654
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.13 E-value=1.1e-06 Score=81.22 Aligned_cols=305 Identities=13% Similarity=0.029 Sum_probs=138.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH-HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHH---H
Q 011714 87 DFNDLLMALVMLNEQETAVKFFSEASSYGL-APNS-WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTI---L 161 (479)
Q Consensus 87 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l 161 (479)
.|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+.+++..+.. |.+...+.. +
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 344444444445555555555554433210 1111 111222334445666666666666665542 223333331 1
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 011714 162 VNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 241 (479)
Q Consensus 162 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 241 (479)
.......+..+.+.+.+..... ..+........+...+...|++++|...+++..+... .+...+..+..++...|++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCH
Confidence 1111123334444444433111 1122223334445566666677777777766666532 2445556666666667777
Q ss_pred HHHHHHHHHHHHCCC-CCCH--hhHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCCHhHH-H--HHHHHHHhcCChHHH
Q 011714 242 NEAMELLNEAIERGV-TPNV--VTFNTLFNGYCKEGTPMKGVGLLKLMKKRNC-LPDKISY-S--TLLNGLLKWGKIRPA 314 (479)
Q Consensus 242 ~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a 314 (479)
++|...+++..+... .++. ..|..+...+...|++++|+.++++...... .+..... + .++.-+...|....+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 777777666655421 1121 2344556666667777777777766643321 1111111 1 222223333333322
Q ss_pred HHH--HHHHHHcCCCcCHHHHH--HHHHHHhcccchhhccHHHHHHHHHHHHhCCCC------C--ChhhHHHHHHHHhc
Q 011714 315 VSI--FKEMVRFGFEVDERMMN--SLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSV------T--DPGTYGIVIRTLGK 382 (479)
Q Consensus 315 ~~~--~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~ 382 (479)
.++ +..............+. .....+. ..|+.+.|..+++.+...... . .....-...-++..
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALA-----GAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 222 11111100000111111 1222222 456777777777766542211 0 11122223344567
Q ss_pred CCCHHHHHHHHHHHHHc
Q 011714 383 GKKTDEALIHLHHAIEM 399 (479)
Q Consensus 383 ~g~~~~A~~~~~~~~~~ 399 (479)
.|+.++|.+.+......
T Consensus 320 ~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 320 EGNYATALELLGPVRDD 336 (355)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 88889998888877653
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.10 E-value=3.7e-06 Score=79.49 Aligned_cols=364 Identities=12% Similarity=0.058 Sum_probs=237.4
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHH-hcCChhhH
Q 011714 62 KASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAP-NSWTFSIMIRCYC-NKNDFFEA 139 (479)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~~~~~~a 139 (479)
..|.+..+.+.|++....-+. ..+.|+.+...+...|.-..|+.++++.....-.| +...+-..-..|. +.+..+++
T Consensus 335 ~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eeg 413 (799)
T KOG4162|consen 335 RCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEG 413 (799)
T ss_pred HHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhH
Confidence 456777888888887654333 67889999999999999999999999866442224 3344444444444 45677777
Q ss_pred HHHHHHHHhC--C--CCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 011714 140 RKVIDCMFDN--G--YHPNVTTFTILVNSLCKS-----------GRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVG 204 (479)
Q Consensus 140 ~~~~~~~~~~--~--~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 204 (479)
+.+..+.... + -......|..+.-+|... ....++++.+++..+.+ +.|..+...+.--|+..+
T Consensus 414 ldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~R 492 (799)
T KOG4162|consen 414 LDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQR 492 (799)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHH
Confidence 7777666651 1 122344555555555432 12467888888887765 334444444555678889
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCC------------------CCHhhHHH
Q 011714 205 RVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIER-GVT------------------PNVVTFNT 265 (479)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~------------------~~~~~~~~ 265 (479)
+.+.|....++..+.+-.-+...|..+.-.+...+++.+|+.+.+..... |.. -...|...
T Consensus 493 ~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~ 572 (799)
T KOG4162|consen 493 QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIH 572 (799)
T ss_pred hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHH
Confidence 99999999999998866778999999999999999999999999887654 210 00111111
Q ss_pred HHHHHH------h-----------------cCChhhHHHHHHHHH--------hCC---------CC--CC------HhH
Q 011714 266 LFNGYC------K-----------------EGTPMKGVGLLKLMK--------KRN---------CL--PD------KIS 297 (479)
Q Consensus 266 l~~~~~------~-----------------~g~~~~a~~~~~~~~--------~~~---------~~--~~------~~~ 297 (479)
++..+- . .++..++.+....+. ..| .. |+ ...
T Consensus 573 ~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~l 652 (799)
T KOG4162|consen 573 KLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKL 652 (799)
T ss_pred HHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHH
Confidence 221111 0 011111211111110 001 00 11 122
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011714 298 YSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVI 377 (479)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 377 (479)
|......+.+.+..++|...+.+..... ......+...-..+ ...|..++|...|......++. ++.+..++.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~-----~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala 725 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLL-----EVKGQLEEAKEAFLVALALDPD-HVPSMTALA 725 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHH-----HHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHH
Confidence 3344556677777778877777765432 11222222221222 2568999999999988877655 567889999
Q ss_pred HHHhcCCCHHHHHH--HHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 378 RTLGKGKKTDEALI--HLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 378 ~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
.++.+.|+..-|.. ++..+++.+.. +...|..+...+.+.|+.++|.+.|....+..
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 99999999888888 99999987543 68899999999999999999999999888764
No 87
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.09 E-value=1.6e-06 Score=90.75 Aligned_cols=337 Identities=11% Similarity=0.025 Sum_probs=207.4
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--C----CCCH--HHHHHHHHHH
Q 011714 129 CYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIG--C----KPNI--QTYNCLLKGL 200 (479)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~----~~~~--~~~~~l~~~~ 200 (479)
.....|+++.+..+++.+.......+..........+...|+++++..++......- . .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 344567777777776655321111222333444555667899999999998775421 0 1111 1222334456
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCC-CCHhhHHHHHHHHH
Q 011714 201 CYVGRVEEAYEMLMNVKNDGLKPDV----YTYTAVMDGFCKVGRSNEAMELLNEAIER----GVT-PNVVTFNTLFNGYC 271 (479)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~ 271 (479)
...|++++|...+++........+. ...+.+...+...|++++|...+++.... |.. .....+..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6889999999999988763111121 23455666778899999999999888653 111 11234556677888
Q ss_pred hcCChhhHHHHHHHHHhC----CCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCcCHHH--HHHHHHHH
Q 011714 272 KEGTPMKGVGLLKLMKKR----NCL--P-DKISYSTLLNGLLKWGKIRPAVSIFKEMVRFG--FEVDERM--MNSLLRGL 340 (479)
Q Consensus 272 ~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~--~~~l~~~~ 340 (479)
..|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+.... +..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998876542 221 1 22334455666778899999999998876431 1122111 11122222
Q ss_pred hcccchhhccHHHHHHHHHHHHhCCCCC-ChhhH-----HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCc---hHHHHHH
Q 011714 341 CMKSWEEKDLLEDAYQVFEKMTKKVSVT-DPGTY-----GIVIRTLGKGKKTDEALIHLHHAIEMGHIPR---TITFNNV 411 (479)
Q Consensus 341 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l 411 (479)
...|+.+.|...+.......... ....+ ...+..+...|+.+.|..++........... ...+..+
T Consensus 623 -----~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 623 -----LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred -----HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 26699999999988775421110 11111 1122445568899999998876543211111 1113456
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 412 IQALCGEGKIDKALLLLFLMYEH----AKIP-SRTSYDMLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
..++...|++++|...+++.... +... ...+...+..++.+.|+.++|...+.++++..
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 67788999999999999988753 2121 22456677788999999999999999998753
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=2.5e-06 Score=71.42 Aligned_cols=389 Identities=14% Similarity=0.081 Sum_probs=224.7
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHH-HHHHHHhcCChh
Q 011714 59 DRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSI-MIRCYCNKNDFF 137 (479)
Q Consensus 59 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~ 137 (479)
..++..+..+|++++..-.++... +......|..+|-...++..|-..|+++... .|...-|.. -...+-+.+.+.
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccH
Confidence 345778889999999888777654 7778888999999999999999999998865 565555543 345667788899
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011714 138 EARKVIDCMFDNGYHPNVTTFTILVN--SLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMN 215 (479)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 215 (479)
.|+++...|... ++...-..-+. .....+++..+..++++....| +..+.+...-...+.|+++.|.+-|..
T Consensus 96 DALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 96 DALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHH
Confidence 999998888642 22222111122 2335678888888888877543 444555555556788999999999988
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-------------CCHh---------------hHHHHH
Q 011714 216 VKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVT-------------PNVV---------------TFNTLF 267 (479)
Q Consensus 216 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~---------------~~~~l~ 267 (479)
..+-+---....|+..+ +..+.|+++.|+++..+++++|++ ||+. .+|.-.
T Consensus 170 AlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 87754333455666544 556778899999999998887654 1211 122223
Q ss_pred HHHHhcCChhhHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccch
Q 011714 268 NGYCKEGTPMKGVGLLKLMKKR-NCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWE 346 (479)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 346 (479)
..+.+.|+++.|.+-+-.|..+ ....|+.|...+.-. -..+++....+-+.-++....-| ..|+..++-.|+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP-~ETFANlLllyC----- 321 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFP-PETFANLLLLYC----- 321 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCC-hHHHHHHHHHHh-----
Confidence 3445677777777777777433 223456666555432 22344555555555555554443 355555555565
Q ss_pred hhccHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHH---
Q 011714 347 EKDLLEDAYQVFEKMTKKVS-VTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKID--- 422 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--- 422 (479)
+..-++.|-+++.+-..... ..+...|+.+=......-..++|++-++.+... ..-.......-++--...++-.
T Consensus 322 KNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~-l~~kLRklAi~vQe~r~~~dd~a~R 400 (459)
T KOG4340|consen 322 KNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGM-LTEKLRKLAIQVQEARHNRDDEAIR 400 (459)
T ss_pred hhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccHHHHH
Confidence 44666666666643222111 012233333322223344566666655544322 0000011111111111122211
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 423 KALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 423 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
.+++-+++..+.. ..+...-...|.+..++..+.++|....+.
T Consensus 401 ~ai~~Yd~~LE~Y----LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 401 KAVNEYDETLEKY----LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 1222222222221 112233344566777888888888877653
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=6.2e-06 Score=74.84 Aligned_cols=372 Identities=15% Similarity=0.096 Sum_probs=220.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 011714 57 FVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDF 136 (479)
Q Consensus 57 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (479)
.-...+.+++++|++=-..-.+.++.+ +..|+....++.-.|++++|+..|.+-.+.. +.|...++.+..++......
T Consensus 43 saa~a~~~~~~~al~da~k~~~l~p~w-~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~ 120 (539)
T KOG0548|consen 43 SAAYASLGSYEKALKDATKTRRLNPDW-AKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAA 120 (539)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCch-hhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHh
Confidence 334456677777776665555554443 5779999999999999999999999988875 66777888888887211000
Q ss_pred h---hHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHH-----hhC-------CCCC
Q 011714 137 F---EARKVIDCMFDN---GYHPNVTTFTILVNSLCKS----------GRLKEALEVLDQM-----GRI-------GCKP 188 (479)
Q Consensus 137 ~---~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~----------g~~~~a~~~~~~~-----~~~-------~~~~ 188 (479)
. .--.++..+... ........|..++..+-+. .++..+.-.+... ... +..|
T Consensus 121 ~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p 200 (539)
T KOG0548|consen 121 DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEP 200 (539)
T ss_pred hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCc
Confidence 0 000111111100 0000111222222222110 0111111111100 000 0111
Q ss_pred ----------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 011714 189 ----------------------NIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAME 246 (479)
Q Consensus 189 ----------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 246 (479)
-..-...+..+..+..+++.|++.+....... .+..-++....+|...|.+.++..
T Consensus 201 ~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~ 278 (539)
T KOG0548|consen 201 CKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIE 278 (539)
T ss_pred ccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhc
Confidence 01124457777788888999999999888764 356666777788899998888888
Q ss_pred HHHHHHHCCCCCCHhhHHHH-------HHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 011714 247 LLNEAIERGVTPNVVTFNTL-------FNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFK 319 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 319 (479)
.-+...+.|.. ...-|+.+ ..+|.+.++++.++..|.+.......|+. ..+....+++.....
T Consensus 279 ~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e 348 (539)
T KOG0548|consen 279 LCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAE 348 (539)
T ss_pred chHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHH
Confidence 87777766543 23333333 33566677888999999887665444332 222233344444443
Q ss_pred HHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 011714 320 EMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEM 399 (479)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 399 (479)
...-.+...-......-...+ ..|++..|...|.+++..++. |...|.....+|.+.|.+..|++-.+...+.
T Consensus 349 ~~a~~~pe~A~e~r~kGne~F------k~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 349 RKAYINPEKAEEEREKGNEAF------KKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHhhChhHHHHHHHHHHHHH------hccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 332222111111112222222 569999999999999988765 8889999999999999999999988887775
Q ss_pred CCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 011714 400 GHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLD 451 (479)
Q Consensus 400 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (479)
. ++....|..=..++....+++.|++.|++..+.+ +.+......+.++..
T Consensus 422 ~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d-p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 422 D-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD-PSNAEAIDGYRRCVE 471 (539)
T ss_pred C-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH
Confidence 2 2234455555666777788999999999998876 223333334444433
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.02 E-value=9.8e-06 Score=69.37 Aligned_cols=301 Identities=16% Similarity=0.086 Sum_probs=180.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHH-HHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTF-TIL 161 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l 161 (479)
.++.-.--+...+...|++..|+.-|...++.+ +.+-.++..-...|...|+...|+.-+...++. +||-..- .--
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 345555667788888999999999999888642 223334444556788889988888888888875 5664332 223
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHH----H------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011714 162 VNSLCKSGRLKEALEVLDQMGRIGCKPNIQ----T------------YNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDV 225 (479)
Q Consensus 162 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 225 (479)
...+.+.|.+++|..=|+...+.. |+.. . ....+..+...|+...|+.....+++.. +.|.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 456778999999999999988763 3211 1 1223445566788888888888887764 3477
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhH----HHHH
Q 011714 226 YTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKIS----YSTL 301 (479)
Q Consensus 226 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~l 301 (479)
..|..-..+|...|++..|+.-+...-+... .+..++..+-..+...|+.+.++...++..+.+ ||... |..+
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHH
Confidence 7788888888888888888887777666533 356666667777778888888888888777653 33321 1111
Q ss_pred ---------HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHH---HHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCC
Q 011714 302 ---------LNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMN---SLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTD 369 (479)
Q Consensus 302 ---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 369 (479)
+......++|.++.+-.+..++.........++ .+..++ ...+++.+|+....++....+. |
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~-----~~d~~~~eAiqqC~evL~~d~~-d 340 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCY-----REDEQFGEAIQQCKEVLDIDPD-D 340 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecc-----cccCCHHHHHHHHHHHHhcCch-H
Confidence 111223344444444444444432221111111 111111 2345555555555555443322 3
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011714 370 PGTYGIVIRTLGKGKKTDEALIHLHHAIE 398 (479)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 398 (479)
..++..-..+|.-...++.|+.-|+.+.+
T Consensus 341 v~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 341 VQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 44444445555555555555555555544
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=6.1e-07 Score=75.03 Aligned_cols=326 Identities=13% Similarity=0.132 Sum_probs=215.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHH-HHHHH
Q 011714 87 DFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTI-LVNSL 165 (479)
Q Consensus 87 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~ 165 (479)
-+.+.+..+.+..++..|++++..-.+.. +.+......+..+|-...++..|-..|+++... .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 46778888889999999999999887764 447888899999999999999999999999875 455555543 24556
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 011714 166 CKSGRLKEALEVLDQMGRIGCKPNIQTYNCLL--KGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 243 (479)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 243 (479)
.+.+.+.+|+++...|... |+...-..-+ ......+++..+..++++....| +..+.+...-...+.|++++
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 6789999999999988753 2222211122 22345788888888888876543 34444444444568999999
Q ss_pred HHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-------------CCHh--------HHHHH
Q 011714 244 AMELLNEAIER-GVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCL-------------PDKI--------SYSTL 301 (479)
Q Consensus 244 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------------~~~~--------~~~~l 301 (479)
|.+-|+...+- |.. ....|+.-+ +..+.|+++.|++...++.++|++ ||+. .-+.+
T Consensus 163 AvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 99999999875 454 455666555 555788999999999999887643 1211 12223
Q ss_pred HH-------HHHhcCChHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhH
Q 011714 302 LN-------GLLKWGKIRPAVSIFKEMVRF-GFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTY 373 (479)
Q Consensus 302 ~~-------~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 373 (479)
+. .+.+.|+++.|.+-+..|..+ ....|+.|...+.-.- -.+++.+..+-+.-+...++. ...++
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n------~~~~p~~g~~KLqFLL~~nPf-P~ETF 313 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN------MDARPTEGFEKLQFLLQQNPF-PPETF 313 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc------ccCCccccHHHHHHHHhcCCC-ChHHH
Confidence 33 345778888898888887632 2334555554443222 224555555556656666665 46889
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHH-cCCCHHHHHHHHHHH
Q 011714 374 GIVIRTLGKGKKTDEALIHLHHAIEMGHI-PRTITFNNVIQALC-GEGKIDKALLLLFLM 431 (479)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~ 431 (479)
..++-.||++.-++-|-+++-+-...... .+...|+ ++.++. ..-..++|.+-++.+
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999998887642211111 1222233 333333 234566665555444
No 92
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.2e-05 Score=78.28 Aligned_cols=337 Identities=14% Similarity=0.148 Sum_probs=219.9
Q ss_pred HHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChhhHHHHHH
Q 011714 69 RIDIFDSIKKDGTN--WSVSDFNDLLMALVMLNEQETAVKFFSEASSYG--LAPNSWTFSIMIRCYCNKNDFFEARKVID 144 (479)
Q Consensus 69 a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (479)
..++.++....+.+ .|++.-.....++...+-..+-+++++++.-.. +.-+...-+.|+-...+. +.....+..+
T Consensus 966 rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~ 1044 (1666)
T KOG0985|consen 966 RRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYIN 1044 (1666)
T ss_pred HHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHH
Confidence 44566666654433 466777788888988999999999999887432 233344455555555544 4455666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011714 145 CMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPD 224 (479)
Q Consensus 145 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 224 (479)
++-.-+ .|+ +...+...+-+++|..+|++.. .+..+.+.|+. ..+..+.|.++-++.. .
T Consensus 1045 rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~ 1103 (1666)
T KOG0985|consen 1045 RLDNYD-APD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------E 1103 (1666)
T ss_pred HhccCC-chh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------C
Confidence 665432 122 3445566777888888887753 35555555554 3456666666655443 4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011714 225 VYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNG 304 (479)
Q Consensus 225 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (479)
+..|..+..+-.+.|...+|++-|-+. .|+..|..+++...+.|.+++-++++....++.-.|.. =..++-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHH
Confidence 567888888888888888888776433 26777888888888888888888888777766544443 3467778
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC
Q 011714 305 LLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGK 384 (479)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 384 (479)
|++.++..+..+++ .-|+......+-..+. +.+.++.|.-+|..+. .|..+...+...|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf-----~~~~y~aAkl~y~~vS---------N~a~La~TLV~Lg 1234 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCF-----EEKMYEAAKLLYSNVS---------NFAKLASTLVYLG 1234 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHh-----hhhhhHHHHHHHHHhh---------hHHHHHHHHHHHH
Confidence 88888876655543 2456565666666554 5577777777776443 3777788888888
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHH
Q 011714 385 KTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYG 464 (479)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 464 (479)
++..|.+.-+++ .+..+|..+-.+|...+.+.-| +|-..++.....-...|+.-|...|.+++-+.+++
T Consensus 1235 eyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1235 EYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred HHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 888887766653 2456777777777766654332 23333334455566677777777777777777666
Q ss_pred HHH
Q 011714 465 AAL 467 (479)
Q Consensus 465 ~~~ 467 (479)
..+
T Consensus 1304 a~L 1306 (1666)
T KOG0985|consen 1304 AGL 1306 (1666)
T ss_pred hhh
Confidence 543
No 93
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=1.6e-07 Score=85.49 Aligned_cols=225 Identities=16% Similarity=0.114 Sum_probs=128.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 011714 54 AQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNK 133 (479)
Q Consensus 54 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (479)
+..-...++.|.+.+|.-.|+...+.++. ++..|-.|...-..+++-..|+..+.++.+.. +.|......|...|...
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNE 366 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhh
Confidence 34445566677777777777776666554 66777777777777777777777777777654 45566666677777777
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHHHHHHH---------HHHHhcCChHHHHHHHHHHh-hCCCCCCHHHHHHHHHHHHhc
Q 011714 134 NDFFEARKVIDCMFDNGYHPNVTTFTILV---------NSLCKSGRLKEALEVLDQMG-RIGCKPNIQTYNCLLKGLCYV 203 (479)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li---------~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 203 (479)
|.-..|.+.++..+...++ ..|...- ..+..........++|-++. ..+..+|..+...|.-.|--.
T Consensus 367 g~q~~Al~~L~~Wi~~~p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hhHHHHHHHHHHHHHhCcc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 7777777777766543211 0000000 01111112233344444433 233335555666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChhhHHHH
Q 011714 204 GRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPN-VVTFNTLFNGYCKEGTPMKGVGL 282 (479)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~ 282 (479)
|++++|+..|+..+...+. |..+||-|...++...+.++|+..|.++++. .|+ +.+...|.-.|...|.+++|.+.
T Consensus 444 ~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred hHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 6666666666666654322 5566666666666666666666666666664 222 23444555566666666666665
Q ss_pred HHHH
Q 011714 283 LKLM 286 (479)
Q Consensus 283 ~~~~ 286 (479)
|-..
T Consensus 521 lL~A 524 (579)
T KOG1125|consen 521 LLEA 524 (579)
T ss_pred HHHH
Confidence 5443
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.98 E-value=7.6e-06 Score=70.04 Aligned_cols=305 Identities=14% Similarity=0.128 Sum_probs=171.5
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH-
Q 011714 119 NSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTI---LVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYN- 194 (479)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~- 194 (479)
++.-..-+...+...|++..|+.-|-..++. |+..|.+ -...|...|+-..|+.=+.+..+. +||-..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 4444556677777788888888888777653 3333433 345677778888888888887775 56643321
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHH------------HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 011714 195 CLLKGLCYVGRVEEAYEMLMNVKNDGLKPD--VYTY------------TAVMDGFCKVGRSNEAMELLNEAIERGVTPNV 260 (479)
Q Consensus 195 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 260 (479)
--...+.+.|.++.|..-|+.+++....-. ...+ ...+..+...|+...|+.....+++.. +.+.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 223456788888888888888887632111 1111 222334455677777777777777763 3366
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 011714 261 VTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGL 340 (479)
Q Consensus 261 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (479)
..|..-..+|...|.+..|+.-++...+..-. +..++--+-..+...|+.+.+....++-++. .||..........+
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHH
Confidence 67777777777778777777766666554322 4455555666677777777777777776653 44443222211111
Q ss_pred hc--------ccchhhccHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCc-hHHH
Q 011714 341 CM--------KSWEEKDLLEDAYQVFEKMTKKVSVTDP---GTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPR-TITF 408 (479)
Q Consensus 341 ~~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~ 408 (479)
-+ ....+.+++.++....+...+..+.... ..+..+-.++...|++.+|++...++++. .|+ ..++
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l 344 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHH
Confidence 00 0001233444444444444443332111 12333334444555555555555555542 232 4444
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 409 NNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 409 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
.--..+|.-...++.|+.-|+...+.+
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 444555555555555555555555543
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.98 E-value=4.8e-08 Score=85.56 Aligned_cols=250 Identities=14% Similarity=0.126 Sum_probs=162.7
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 011714 59 DRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFE 138 (479)
Q Consensus 59 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 138 (479)
...-.|....++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3444577777765554 333332334555667788888899877544 4444333 6666666666655554455566
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011714 139 ARKVIDCMFDNGYHP-NVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVK 217 (479)
Q Consensus 139 a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 217 (479)
+..-+++........ +.........++...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666555554433332 3333333345566789999999888653 366777788899999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHH----ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 011714 218 NDGLKPDVYTYTAVMDGFC----KVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLP 293 (479)
Q Consensus 218 ~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 293 (479)
+.+ .|. +...+..++. ..+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+..
T Consensus 159 ~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~- 233 (290)
T PF04733_consen 159 QID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN- 233 (290)
T ss_dssp CCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-
T ss_pred hcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-
Confidence 753 343 3333444433 344689999999998665 4568888899999999999999999999998776533
Q ss_pred CHhHHHHHHHHHHhcCCh-HHHHHHHHHHHHc
Q 011714 294 DKISYSTLLNGLLKWGKI-RPAVSIFKEMVRF 324 (479)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 324 (479)
+..+...++-+....|+. +.+.+++.++...
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 667777888888888887 6677788887764
No 96
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=3e-05 Score=71.29 Aligned_cols=127 Identities=16% Similarity=0.060 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011714 87 DFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLC 166 (479)
Q Consensus 87 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (479)
..-+=+..+...+++++|++...++...+ +.+...+..-+.+.++.+++++|+.+.+.-... ..+...+--=..+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence 33444566677899999999999999876 667788888888999999999999665543211 111111111233445
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011714 167 KSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDG 220 (479)
Q Consensus 167 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 220 (479)
+.+..++|+..++-.. +.+..+...-...+.+.|++++|+.+|+.+.+.+
T Consensus 91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 7899999999998333 2344477777788999999999999999997764
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.96 E-value=7.6e-06 Score=85.72 Aligned_cols=337 Identities=12% Similarity=0.001 Sum_probs=212.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC------CCC--HHHHHHHHHHH
Q 011714 94 ALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGY------HPN--VTTFTILVNSL 165 (479)
Q Consensus 94 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~li~~~ 165 (479)
.+...|++..+..+++.+.......+..........+...|+++++...++.....-- .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 4445677777777766553211112222334445566778999999999988754210 111 12223334556
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHH
Q 011714 166 CKSGRLKEALEVLDQMGRIGCKPN----IQTYNCLLKGLCYVGRVEEAYEMLMNVKND----GL-KPDVYTYTAVMDGFC 236 (479)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~ 236 (479)
...|++++|...+++....-...+ ..+.+.+...+...|++++|...+++.... |. .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 679999999999998765311112 134456667778899999999999887643 11 111234556677788
Q ss_pred ccCCHHHHHHHHHHHHHC----CCC--C-CHhhHHHHHHHHHhcCChhhHHHHHHHHHhC--CCCC--CHhHHHHHHHHH
Q 011714 237 KVGRSNEAMELLNEAIER----GVT--P-NVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR--NCLP--DKISYSTLLNGL 305 (479)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~ 305 (479)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+++.... ...+ ....+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999999887652 211 1 2233455666777889999999998887543 1112 233455566678
Q ss_pred HhcCChHHHHHHHHHHHHcC--CCcCHHH---HH-HHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCCh---hhHHHH
Q 011714 306 LKWGKIRPAVSIFKEMVRFG--FEVDERM---MN-SLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDP---GTYGIV 376 (479)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~---~~-~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l 376 (479)
...|+.+.|.+.+....... ....... .. .....+ ...|+.+.|...+............ ..+..+
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYW-----QMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHH-----HHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 88999999999998875421 1111110 00 011112 1457888888887765542211111 113567
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc----CCCCc-hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 377 IRTLGKGKKTDEALIHLHHAIEM----GHIPR-TITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
..++...|++++|...++++... |..++ ..+...+..++...|+.++|...+.+..+..
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 77888999999999999987754 22221 2456667778899999999999999998764
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.96 E-value=2.4e-08 Score=87.47 Aligned_cols=253 Identities=15% Similarity=0.138 Sum_probs=147.0
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 011714 166 CKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAM 245 (479)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 245 (479)
.-.|++..++.-.+ ......+.+......+.+++...|+++.++ .++.... .|.......+...+...++-+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34566666665554 222211223344455667777777766443 3333322 555555555554444334444454
Q ss_pred HHHHHHHHCCCC-CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011714 246 ELLNEAIERGVT-PNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRF 324 (479)
Q Consensus 246 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 324 (479)
.-+++....... .+..........+...|++++|+++++.. .+.......+..+.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444443332222 12222233334556678888887776532 25666677778888888888888888888753
Q ss_pred CCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCc
Q 011714 325 GFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPR 404 (479)
Q Consensus 325 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 404 (479)
..| .+...+..++.... ...+.+.+|..+|+++... ..+++.+.+.+..++...|++++|.+++.+....+. -+
T Consensus 161 --~eD-~~l~qLa~awv~l~-~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~ 234 (290)
T PF04733_consen 161 --DED-SILTQLAEAWVNLA-TGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-ND 234 (290)
T ss_dssp --SCC-HHHHHHHHHHHHHH-HTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CH
T ss_pred --CCc-HHHHHHHHHHHHHH-hCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CC
Confidence 333 44444555554321 1124578888888888765 345778888888889999999999999888776543 35
Q ss_pred hHHHHHHHHHHHcCCCH-HHHHHHHHHHHhCC
Q 011714 405 TITFNNVIQALCGEGKI-DKALLLLFLMYEHA 435 (479)
Q Consensus 405 ~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~ 435 (479)
+.+...++.+....|+. +.+.+++.++....
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 66777778777777887 66777888877653
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=4.9e-07 Score=82.48 Aligned_cols=231 Identities=12% Similarity=0.048 Sum_probs=162.6
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHH
Q 011714 234 GFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRP 313 (479)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 313 (479)
-+.+.|++.+|.-.|+..++..+. +...|..|......+++-..|+..+++..+.... +....-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 346788888888888888877543 6778888888888888888888888888887533 67777788888888888888
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHh--cccchhhccHHHHHHHHHHHH-hCCCCCChhhHHHHHHHHhcCCCHHHHH
Q 011714 314 AVSIFKEMVRFGFEVDERMMNSLLRGLC--MKSWEEKDLLEDAYQVFEKMT-KKVSVTDPGTYGIVIRTLGKGKKTDEAL 390 (479)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 390 (479)
|...++.-++..++- ......-...-. ...+.....+....++|-.+. ..+..+|+.+...|.-.|--.|++++|+
T Consensus 372 Al~~L~~Wi~~~p~y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKY-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHhCccc-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 888888766532110 000000000000 000012233444555555444 3443468888888999999999999999
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 391 IHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 391 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
+.|+.++.... -|..+||.|...++...+.++|+..|.++++.. +-=+.+...|+-.|...|.+++|.+.|-.++..
T Consensus 451 Dcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99998887532 267789999999999899999999999998874 223456667777888999999999888887764
No 100
>PLN02789 farnesyltranstransferase
Probab=98.92 E-value=3.7e-06 Score=74.85 Aligned_cols=204 Identities=12% Similarity=0.083 Sum_probs=98.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh--HHH
Q 011714 98 LNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKN-DFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRL--KEA 174 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~a 174 (479)
.++.++|+.+++++++.. +-+..+|+....++...| ++++++..++.+.+.. +.+..+|+....++.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence 344445555555554432 222333443333333444 3455555555555443 22334444333333333331 445
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CC----HHHHHHH
Q 011714 175 LEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV---GR----SNEAMEL 247 (479)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~----~~~a~~~ 247 (479)
+++++++.+.. +-+..+|+...-++...|+++++++.++++.+.++. +...|+.....+.+. |. .++.+.+
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 55555555443 335555555555555556666666666666555433 444444444333332 11 2345555
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhc----CChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHh
Q 011714 248 LNEAIERGVTPNVVTFNTLFNGYCKE----GTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLK 307 (479)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 307 (479)
..+++...+. |...|+-+...+... +...+|.+.+.+....++ .+......|+..|+.
T Consensus 206 ~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 206 TIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 5555554332 556666666666552 233456666666554332 245556666666654
No 101
>PLN02789 farnesyltranstransferase
Probab=98.81 E-value=1.3e-05 Score=71.31 Aligned_cols=205 Identities=10% Similarity=0.064 Sum_probs=155.5
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh--hhH
Q 011714 63 ASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLN-EQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDF--FEA 139 (479)
Q Consensus 63 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a 139 (479)
.+..++|+.+.+.+.+.++. +..+|+.--..+...| ++++++..++++.+.. +.+..+|+.....+.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence 45679999999999887655 6778887777777777 6899999999999875 56666787666666666653 678
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---CCH----HHHHHH
Q 011714 140 RKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYV---GRV----EEAYEM 212 (479)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~a~~~ 212 (479)
..+++.+.+.. +-|..+|+...-++...|+++++++.++++++.+ +.+..+|+.....+.+. |.. ++.+.+
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 89998998775 4588899999888999999999999999999886 45777888777666554 222 467777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcc----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 011714 213 LMNVKNDGLKPDVYTYTAVMDGFCKV----GRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKE 273 (479)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (479)
..+.....+ -+...|+.+...+... +...+|.+.+.+..+.++. +......|+..|+..
T Consensus 206 ~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~ 268 (320)
T PLN02789 206 TIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhh
Confidence 777776543 3778888888777773 3456788888887765433 667778888888753
No 102
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.81 E-value=0.0001 Score=67.24 Aligned_cols=383 Identities=11% Similarity=0.110 Sum_probs=179.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
|..+|+.||+-+..+ .++++.+.++++...- +-....|..-|..-...++++..+.+|.+.+.. ..+...|...++
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHH
Confidence 777777777776555 7777788887777542 445667777777777777888888887777654 235566665554
Q ss_pred HHHh-cCChHH----HHHHHHHH-hhCCCCC-CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHHCCCCC----
Q 011714 164 SLCK-SGRLKE----ALEVLDQM-GRIGCKP-NIQTYNCLLKG---------LCYVGRVEEAYEMLMNVKNDGLKP---- 223 (479)
Q Consensus 164 ~~~~-~g~~~~----a~~~~~~~-~~~~~~~-~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~---- 223 (479)
---+ .|+... ..+.|+-. .+.|+.+ +-..|+..+.. |..+.+.+...++|.++...-+.-
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 3222 222222 22223222 2333222 22334444332 223334555666666665431110
Q ss_pred --CHHHHHHHHHHH-------HccCCHHHHHHHHHHHHH--CCCCCCHh---------------hHHHHHHHHHhcCCh-
Q 011714 224 --DVYTYTAVMDGF-------CKVGRSNEAMELLNEAIE--RGVTPNVV---------------TFNTLFNGYCKEGTP- 276 (479)
Q Consensus 224 --~~~~~~~li~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~---------------~~~~l~~~~~~~g~~- 276 (479)
|-.+|..-|+.. -+...+..|.++++++.. .|...... .|-.+|.--..++--
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 111221111111 123345566666666543 23221111 133333322211111
Q ss_pred -------hhHHHHHHHH-HhCCCCCCHhH-HHH----HHHHHHhcCCh-------HHHHHHHHHHHHcCCCcCHHHHHHH
Q 011714 277 -------MKGVGLLKLM-KKRNCLPDKIS-YST----LLNGLLKWGKI-------RPAVSIFKEMVRFGFEVDERMMNSL 336 (479)
Q Consensus 277 -------~~a~~~~~~~-~~~~~~~~~~~-~~~----l~~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l 336 (479)
....-.+++. .-.+..|+... +.. .-+.+...|+. +++..+++..+..-..-+..++..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111122222 11233332211 111 11123333333 3344444443322111111122111
Q ss_pred HHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-chHHHHHHHHHH
Q 011714 337 LRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIP-RTITFNNVIQAL 415 (479)
Q Consensus 337 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 415 (479)
.. +-... .+....+....+++++...-..--..+|..++..-.+..-.+.|..+|.++.+.+..+ +..++.+++.-+
T Consensus 335 a~-~eE~~-~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 335 AD-YEESR-YDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred Hh-hHHHh-cccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 11 10000 0111234444455544432221122456666666666667777777777777665555 455556666555
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCC
Q 011714 416 CGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIPQ 474 (479)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 474 (479)
|. ++.+-|.++|+.-.+.. ..++..-...+.-+...++-..|..+|++.+..++.||
T Consensus 413 cs-kD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 413 CS-KDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred hc-CChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 53 66677777777655543 23344444555666666777777777777776655544
No 103
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.80 E-value=3.1e-06 Score=79.47 Aligned_cols=235 Identities=14% Similarity=0.140 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSL 165 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (479)
..-..+...+...|-...|+.+|++.. .|..++.+|+..|+.++|..+..+..+. +|+...|..+.+..
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 334556778888899999999998765 5778889999999999999998888874 78999999999988
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 011714 166 CKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAM 245 (479)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 245 (479)
....-+++|.++.+..-.. +-..+.....+.+++.++.+.|+.-.+.+ +....+|-.+.-+..+.++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 7777889999988775432 22233333445789999999998877654 236778888888888999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011714 246 ELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFG 325 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 325 (479)
+.|.......+ .+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+-...+.|.++.|.+.+.++....
T Consensus 540 ~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 540 KAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99988877532 366789999999999999999999999998887 3466677777778889999999999998876421
Q ss_pred -CCcCHHHHHHHHHHHh
Q 011714 326 -FEVDERMMNSLLRGLC 341 (479)
Q Consensus 326 -~~~~~~~~~~l~~~~~ 341 (479)
...|..+...++....
T Consensus 618 ~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 618 KKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhcccchhhHHHHHHHH
Confidence 1114444444444443
No 104
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.78 E-value=1.1e-05 Score=81.23 Aligned_cols=233 Identities=11% Similarity=0.064 Sum_probs=164.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhh
Q 011714 187 KPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND-GLKP---DVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVT 262 (479)
Q Consensus 187 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 262 (479)
+-+...|-..|......++.++|.++.++.+.. ++.- -...|.++++.-...|.-+...++|+++.+.. . ....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHH
Confidence 445667888888888888888888888887653 1111 13456677777777777788888998887752 2 3456
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHh
Q 011714 263 FNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEV-DERMMNSLLRGLC 341 (479)
Q Consensus 263 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 341 (479)
|..|...|.+.+..++|.++++.|.++ +.-....|...+..+.+.++-+.|..++.++++.-..- ...........-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 888889999999999999999999776 22456788888888888888889999998887652221 1122222222222
Q ss_pred cccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCch--HHHHHHHHHHHcCC
Q 011714 342 MKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRT--ITFNNVIQALCGEG 419 (479)
Q Consensus 342 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g 419 (479)
+.|+.+.++.+|+......+. ....|+.+++.-.++|+.+.+..+|+++...++.|.. ..|...+..=-..|
T Consensus 1612 -----k~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~G 1685 (1710)
T KOG1070|consen 1612 -----KYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHG 1685 (1710)
T ss_pred -----hcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcC
Confidence 568888888888888776655 4567888888888888888888999888887776643 34555555555556
Q ss_pred CHHHHHHHH
Q 011714 420 KIDKALLLL 428 (479)
Q Consensus 420 ~~~~a~~~~ 428 (479)
+-+.+..+=
T Consensus 1686 de~~vE~VK 1694 (1710)
T KOG1070|consen 1686 DEKNVEYVK 1694 (1710)
T ss_pred chhhHHHHH
Confidence 654444433
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=1.4e-06 Score=81.73 Aligned_cols=221 Identities=14% Similarity=0.072 Sum_probs=177.2
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHH
Q 011714 222 KPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTL 301 (479)
Q Consensus 222 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 301 (479)
+|-...-..+...+...|-...|..++++.. .|..++.+|+..|+..+|..+..+..++ +|+...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3444445667788889999999999997753 4788899999999999999999888873 5788889888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 011714 302 LNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLG 381 (479)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (479)
.+......-+++|+++.+....+ .-..+-... -..++++++.+.|+.-.+.++. -..+|-....+..
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~-----~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~AL 530 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLI-----LSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAAL 530 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhcccc-----ccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHH
Confidence 88877777788898888775432 000000001 1458999999999987766544 5578888999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCC-chHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHH
Q 011714 382 KGKKTDEALIHLHHAIEMGHIP-RTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDAC 460 (479)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 460 (479)
+.++++.|.+.|...+.. .| +...||.+-.+|.+.|+..+|...+.+..+.+ ..+...|...+....+.|.+++|+
T Consensus 531 qlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHH
Confidence 999999999999988774 44 46789999999999999999999999999887 557788888888899999999999
Q ss_pred HHHHHHHhC
Q 011714 461 ALYGAALKQ 469 (479)
Q Consensus 461 ~~~~~~~~~ 469 (479)
+.+.+++..
T Consensus 608 ~A~~rll~~ 616 (777)
T KOG1128|consen 608 KAYHRLLDL 616 (777)
T ss_pred HHHHHHHHh
Confidence 999998875
No 106
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.76 E-value=4.4e-06 Score=69.00 Aligned_cols=154 Identities=16% Similarity=0.112 Sum_probs=71.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011714 91 LLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGR 170 (479)
Q Consensus 91 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 170 (479)
+-..+...|+-+....+........ +.|.......+....+.|++.+|...+.+..... ++|...|+.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 3344444444444444444432211 2233333444555555555555555555554332 4455555555555555555
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 011714 171 LKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELL 248 (479)
Q Consensus 171 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 248 (479)
.++|..-|.+..+.. .-+...++.+...+.-.|+++.|..++......+.. |...-..+.......|++++|.++.
T Consensus 150 ~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 150 FDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 555555555544432 223334444444555555555555555554443221 3444444444455555555555444
No 107
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=0.0002 Score=70.20 Aligned_cols=219 Identities=17% Similarity=0.238 Sum_probs=130.2
Q ss_pred hhhHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 011714 66 LKERIDIFDSIKKDG--TNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVI 143 (479)
Q Consensus 66 ~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (479)
+.+-+++++.+.-.+ ..-+...-|.|+-...+. +.....++.+++-... .|+ +...+...+-+++|..+|
T Consensus 1000 p~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~if 1071 (1666)
T KOG0985|consen 1000 PNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIF 1071 (1666)
T ss_pred cHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHH
Confidence 466777887775322 222333345555444443 3445555666555443 233 334555667777888887
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011714 144 DCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKP 223 (479)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 223 (479)
+..- .+....+.|+. .-+..+.|.++-++.. .+..|..+..+-.+.|...+|++-|-+..
T Consensus 1072 kkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyikad------ 1131 (1666)
T KOG0985|consen 1072 KKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKAD------ 1131 (1666)
T ss_pred HHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhcC------
Confidence 7653 35555566654 3456677776666543 34567777777777777777776663321
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011714 224 DVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLN 303 (479)
Q Consensus 224 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 303 (479)
|+..|..+++...+.|.+++-.+++....+....|.+. +.||-+|++.++..+..+++ ..|+......+.+
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGd 1202 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGD 1202 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhH
Confidence 56667777777777777777777776665554444433 56777777777766655543 1245555555555
Q ss_pred HHHhcCChHHHHHHHHHH
Q 011714 304 GLLKWGKIRPAVSIFKEM 321 (479)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~ 321 (479)
-|...|.++.|.-+|...
T Consensus 1203 rcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HHhhhhhhHHHHHHHHHh
Confidence 566666666555555443
No 108
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=3.8e-05 Score=73.37 Aligned_cols=329 Identities=17% Similarity=0.093 Sum_probs=194.4
Q ss_pred CHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC-C--------CC
Q 011714 84 SVSDFNDLLM--ALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDN-G--------YH 152 (479)
Q Consensus 84 ~~~~~~~ll~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~ 152 (479)
|..+-..++. .|...|+.+.|.+-.+-++ +...|..+..+|.+..+++-|.-.+-.|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4455555553 4566788898887776655 3468899999999888887776666555421 0 11
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011714 153 PNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVM 232 (479)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 232 (479)
++ ..=....-.....|.+++|..+|.+.+.. ..|=..|-..|.+++|+++-+.--+..+ ..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHH
Confidence 21 22122222345678899999999887743 3455667788999999888765433222 34555556
Q ss_pred HHHHccCCHHHHHHHHHHHH----------HCC---------CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 011714 233 DGFCKVGRSNEAMELLNEAI----------ERG---------VTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLP 293 (479)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~----------~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 293 (479)
..+-..++.+.|++.|++.. ... ...|...|......+-..|+.+.|+.+|....+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 66666777777777776531 110 112444555555566667777777777765443
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhH
Q 011714 294 DKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTY 373 (479)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 373 (479)
|-.+++..+-.|+.++|.++-++- -|......+.+.| +..|++.+|...|.+... +
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~Y-----En~g~v~~Av~FfTrAqa---------f 996 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMY-----ENDGDVVKAVKFFTRAQA---------F 996 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHH---------H
Confidence 445566667778888887776542 2444455556665 477888888888876643 2
Q ss_pred HHHHHHHhc---------------CCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHH--------
Q 011714 374 GIVIRTLGK---------------GKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFL-------- 430 (479)
Q Consensus 374 ~~l~~~~~~---------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-------- 430 (479)
...|+.|-. ..+.-.|-.+|++. |.. +...+..|-++|.+.+|+++.-+
T Consensus 997 snAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~ 1068 (1416)
T KOG3617|consen 997 SNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALD 1068 (1416)
T ss_pred HHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHH
Confidence 222222222 12223333444321 111 22334456677777777654321
Q ss_pred HHhC--CCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 431 MYEH--AKIPSRTSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 431 ~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
++.. ....|+...+.-.+.++...++++|..++-.+.+
T Consensus 1069 lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1069 LIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1222 2234667777777777778888888777665543
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=4e-06 Score=72.34 Aligned_cols=184 Identities=14% Similarity=0.083 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH---H
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNS---WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVT---T 157 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~ 157 (479)
....+..+...+...|+++.|...|+++.... +.+. .++..+..++...|++++|...++.+.+.... +.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchHHH
Confidence 45556666667777777777777777766542 2222 35566667777777777777777777654321 111 3
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011714 158 FTILVNSLCKS--------GRLKEALEVLDQMGRIGCKPN-IQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTY 228 (479)
Q Consensus 158 ~~~li~~~~~~--------g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (479)
+..+..++... |+.++|.+.++++.... |+ ...+..+..... ... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHHH
Confidence 44444444443 66777888888777653 33 222222211100 000 00 0011
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 229 TAVMDGFCKVGRSNEAMELLNEAIERGV--TPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR 289 (479)
Q Consensus 229 ~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (479)
..+...+.+.|++++|...++.+.+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455667778888888888887776522 123456777788888888888888877777654
No 110
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=0.00011 Score=70.33 Aligned_cols=225 Identities=18% Similarity=0.121 Sum_probs=142.0
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC--------CCCHHhHHHHHHHHHhc
Q 011714 63 ASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSY-GL--------APNSWTFSIMIRCYCNK 133 (479)
Q Consensus 63 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-~~--------~~~~~~~~~l~~~~~~~ 133 (479)
.|+.+.|.+-...++ +...|..+.+.|.+.++.+-|.-.+..|... |. .|+ .+-..........
T Consensus 741 iG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL 813 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL 813 (1416)
T ss_pred eccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence 355555555554444 5678999999999999999887777666421 11 122 3333444455678
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011714 134 NDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEML 213 (479)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 213 (479)
|.+++|..+|++-.+. ..|=..|-..|.+++|+++-+.-....+ ..||.....-+...++.+.|+++|
T Consensus 814 gMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred hhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHH
Confidence 9999999999988753 3344567778999999998766443322 235555566666677788887777
Q ss_pred HHH----------HHCC---------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 011714 214 MNV----------KNDG---------LKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEG 274 (479)
Q Consensus 214 ~~~----------~~~~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 274 (479)
++. +... -..|...|.-....+-..|+.+.|+.+|..+.+ |-.++...|-.|
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQG 952 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeecc
Confidence 643 2211 122445555556666678888888888877654 445555666666
Q ss_pred ChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 011714 275 TPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEM 321 (479)
Q Consensus 275 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (479)
+.++|-++-++- | |....-.+.+.|-+.|++.+|..+|.+.
T Consensus 953 k~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 953 KTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred CchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 666666654432 2 3444445556666666666666665544
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.70 E-value=1.9e-05 Score=79.51 Aligned_cols=204 Identities=14% Similarity=0.122 Sum_probs=108.8
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHP-----NVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYN 194 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (479)
...|-..|....+.++.++|+++.++.+.. +.+ -...|.++++.-...|.-+...++|++..+.. ..-..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 445555555566666666666666655532 111 12245555555555555566666666665532 1223455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhc
Q 011714 195 CLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVT-PNVVTFNTLFNGYCKE 273 (479)
Q Consensus 195 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 273 (479)
.|...|.+.+.+++|.++++.|.+. ..-....|...+..+.+.++-+.|..++.++++.-.. -......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 5666666666666666666666554 1234555666666666666666666666665553111 0122333344444556
Q ss_pred CChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 011714 274 GTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEV 328 (479)
Q Consensus 274 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 328 (479)
|+.+.+..+|+...... +-....|+..++.-.++|+.+.++.+|+++...++.|
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 66666666666555542 1234556666666666666666666666666555544
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.70 E-value=9e-06 Score=67.21 Aligned_cols=159 Identities=14% Similarity=0.078 Sum_probs=101.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 011714 124 SIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYV 203 (479)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 203 (479)
..+-..+...|+-+....+....... .+.|......++....+.|++..|+..+.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44555566666666666666654432 23455566666777777777777777777766654 66677777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHH
Q 011714 204 GRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLL 283 (479)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 283 (479)
|++++|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......+.. |...-..+.......|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777777776665322 4455666666666777777777777666655332 5555566666666777777776665
Q ss_pred HHH
Q 011714 284 KLM 286 (479)
Q Consensus 284 ~~~ 286 (479)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 443
No 113
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.69 E-value=5.4e-05 Score=73.92 Aligned_cols=389 Identities=11% Similarity=0.009 Sum_probs=224.7
Q ss_pred hhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHH
Q 011714 66 LKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDC 145 (479)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 145 (479)
...|+..|-+..+.++. =...|..|...|....+...|.+.|+..-+.. ..+..........|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 45555555444444333 34567888888888778889999999888765 56677888888999999999999888333
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011714 146 MFDNGYHPN--VTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKP 223 (479)
Q Consensus 146 ~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 223 (479)
.-+.. +.- ...|....-.|.+.++..+|+.-|+...+.. +.|...|..+..+|.+.|++..|.++|.+.... .|
T Consensus 552 ~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 552 AAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred Hhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 32221 111 1223334445667888899999898888765 557889999999999999999999999888765 33
Q ss_pred CH-HHHHHHHHHHHccCCHHHHHHHHHHHHHC------CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH-------hC
Q 011714 224 DV-YTYTAVMDGFCKVGRSNEAMELLNEAIER------GVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMK-------KR 289 (479)
Q Consensus 224 ~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~ 289 (479)
+. ..---..-.-+..|++++|...+...+.. +...-..++-.+...+.-.|-..++.+++++-+ ..
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 32 22122233456788999999888877653 111122233333333333444444444443332 22
Q ss_pred CCCCCHhHHHHHHHHHHhcCChH--H----HHHHH-HHHHHcCCCcCHH---------------------HHHHHHHHH-
Q 011714 290 NCLPDKISYSTLLNGLLKWGKIR--P----AVSIF-KEMVRFGFEVDER---------------------MMNSLLRGL- 340 (479)
Q Consensus 290 ~~~~~~~~~~~l~~~~~~~~~~~--~----a~~~~-~~~~~~~~~~~~~---------------------~~~~l~~~~- 340 (479)
....+...|..+-.+|.-.-..+ . ...++ .+....+.-++.. .++..+..+
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR 787 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH
Confidence 11112222222222221100000 0 00011 1111111111111 111111111
Q ss_pred --hcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcC
Q 011714 341 --CMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGE 418 (479)
Q Consensus 341 --~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 418 (479)
.... +...+...|...+.+..+.... +...|+.+.-+ ...|.+.-|...|-+..-.. +-...+|..+...|.+.
T Consensus 788 ~f~~l~-et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 788 YFLLLG-ETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHcC-CcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEec
Confidence 1000 1122234677777766654333 56677776665 55577777777766555432 23566788888888899
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHH
Q 011714 419 GKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGA 465 (479)
Q Consensus 419 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 465 (479)
.+++.|...|...+... +.+...|-.........|+.-++..+|..
T Consensus 864 ~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999998888765 44556665555555667877777777766
No 114
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.69 E-value=1.1e-05 Score=80.08 Aligned_cols=150 Identities=11% Similarity=0.074 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011714 152 HPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNI-QTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTA 230 (479)
Q Consensus 152 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 230 (479)
+.+...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+++..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 345778889999999999999999999977765 3443 3444444466666665544433 2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCC
Q 011714 231 VMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGK 310 (479)
Q Consensus 231 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 310 (479)
++.......++.....+...+.+.+ -+...+..+..+|-+.|+.++|..+++++.+.. +-|....+.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 3333344444444444444444432 234466677777888888888888888887776 33677777777777777 7
Q ss_pred hHHHHHHHHHHHHc
Q 011714 311 IRPAVSIFKEMVRF 324 (479)
Q Consensus 311 ~~~a~~~~~~~~~~ 324 (479)
.++|.+++.+.+..
T Consensus 165 L~KA~~m~~KAV~~ 178 (906)
T PRK14720 165 KEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777776653
No 115
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.69 E-value=0.00041 Score=67.31 Aligned_cols=234 Identities=13% Similarity=0.079 Sum_probs=153.8
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 011714 51 SLQAQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMA--LVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIR 128 (479)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 128 (479)
.+..+-+.+.+..++.++|+...+.+.+..+. . .|..++.+ +.+.|+.++|..+++.....+ ..|..|...+-.
T Consensus 10 err~rpi~d~ld~~qfkkal~~~~kllkk~Pn--~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~ 85 (932)
T KOG2053|consen 10 ERRLRPIYDLLDSSQFKKALAKLGKLLKKHPN--A-LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQN 85 (932)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCC--c-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHH
Confidence 45567788888899999999999888766433 2 23444444 456899999998888776655 337888899999
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---
Q 011714 129 CYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGR--- 205 (479)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 205 (479)
+|.+.++.++|..+|+..... -|+......+..+|.+.+.+.+-.+.--++.+. .+-+...+-++++.+...-.
T Consensus 86 ~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~ 162 (932)
T KOG2053|consen 86 VYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSEN 162 (932)
T ss_pred HHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCc
Confidence 999999999999999999876 466777778888888887765544443333332 23344555555555443321
Q ss_pred -------HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHH-HHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 011714 206 -------VEEAYEMLMNVKNDG-LKPDVYTYTAVMDGFCKVGRSNEAMELL-NEAIERGVTPNVVTFNTLFNGYCKEGTP 276 (479)
Q Consensus 206 -------~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 276 (479)
..-|.+.++.+.+.+ ..-+..-.......+...|++++|.+++ ....+.-...+...-+.-+..+...+++
T Consensus 163 ~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w 242 (932)
T KOG2053|consen 163 ELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRW 242 (932)
T ss_pred ccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcCh
Confidence 233556666666543 1112222223334456678888888888 3333333333444455667777788888
Q ss_pred hhHHHHHHHHHhCCC
Q 011714 277 MKGVGLLKLMKKRNC 291 (479)
Q Consensus 277 ~~a~~~~~~~~~~~~ 291 (479)
.+..++..++...|.
T Consensus 243 ~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 243 QELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHHHHHhCC
Confidence 888888888877763
No 116
>PF12854 PPR_1: PPR repeat
Probab=98.67 E-value=3.6e-08 Score=54.83 Aligned_cols=29 Identities=41% Similarity=0.942 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011714 152 HPNVTTFTILVNSLCKSGRLKEALEVLDQ 180 (479)
Q Consensus 152 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 180 (479)
.||..+|+.||++|++.|++++|.++|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 33444444444444444444444443333
No 117
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=5.6e-05 Score=62.66 Aligned_cols=120 Identities=13% Similarity=0.082 Sum_probs=61.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH----h
Q 011714 197 LKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYC----K 272 (479)
Q Consensus 197 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 272 (479)
...|++.|++++|++..+... +......=+.++.+..+.+-|.+.++.|.+.. +..+.+.|..++. .
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 344556666666666554411 22222222334445555566666666665531 3334443444333 2
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011714 273 EGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGF 326 (479)
Q Consensus 273 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 326 (479)
.+...+|.-+|++|-++ .+|+..+.+....++...|++++|..++++.+....
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 34455666666666543 345556666666666666666666666666655443
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.66 E-value=1e-05 Score=66.94 Aligned_cols=119 Identities=12% Similarity=0.119 Sum_probs=66.8
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCC--HHHH
Q 011714 168 SGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGF-CKVGR--SNEA 244 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~~~a 244 (479)
.++.+++...+++..+.+ +.+...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 444555555555555443 445556666666666666666666666666554322 455555555542 44444 3666
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 245 MELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR 289 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (479)
.+++++..+.... +...+..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666655333 4555566666666666666666666666554
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.66 E-value=1.7e-06 Score=71.63 Aligned_cols=120 Identities=11% Similarity=0.098 Sum_probs=96.1
Q ss_pred hccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH-HcCCC--HHHH
Q 011714 348 KDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQAL-CGEGK--IDKA 424 (479)
Q Consensus 348 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~a 424 (479)
.++.+++...++.....++. +...|..+...|...|++++|...++++..... .+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 35667777777777776665 778899999999999999999999998888643 2566777777764 56676 5899
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 425 LLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
.+++++..+.+ +.+...+..+...+.+.|++++|...|+++++..
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999886 4477888888889999999999999999998864
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.65 E-value=1.1e-05 Score=69.72 Aligned_cols=187 Identities=14% Similarity=0.025 Sum_probs=110.9
Q ss_pred CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-CC-HHH
Q 011714 118 PNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNV---TTFTILVNSLCKSGRLKEALEVLDQMGRIGCK-PN-IQT 192 (479)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~-~~~ 192 (479)
.....+..+...+...|++++|...++++.... +.+. ..+..+..++.+.|++++|...++++.+.... +. ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345666777777778888888888888777653 2222 35666777777888888888888887765311 11 113
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 011714 193 YNCLLKGLCYV--------GRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFN 264 (479)
Q Consensus 193 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 264 (479)
+..+..++... |++++|.+.++.+...... +...+..+..... ... .. .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~--------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence 44445555443 5566677777776654222 2222222111100 000 00 00112
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011714 265 TLFNGYCKEGTPMKGVGLLKLMKKRNC--LPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRF 324 (479)
Q Consensus 265 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 324 (479)
.+...|.+.|++.+|+..++...+... +.....+..+..++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455667788888888888888776531 123456777888888888888888887777653
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.63 E-value=2.5e-05 Score=77.71 Aligned_cols=240 Identities=12% Similarity=0.092 Sum_probs=164.7
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 011714 117 APNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCL 196 (479)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (479)
+.+...+..|+..+...+++++|.++.+...+.. +-....|-.+...+.+.++..++..+ . +
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~ 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--N---------------L 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--h---------------h
Confidence 3457789999999999999999999999877652 33344555555577777776555554 2 3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 011714 197 LKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTP 276 (479)
Q Consensus 197 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 276 (479)
+.......++.-+..++..+... .-+...+..+..+|-+.|+.++|..+++++++.... |+.+.|.+...|... +.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hH
Confidence 33333344443344444444443 224557888999999999999999999999998744 888999999999999 99
Q ss_pred hhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHH
Q 011714 277 MKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQ 356 (479)
Q Consensus 277 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ 356 (479)
++|.+++.+.... +...+++..+.++|.++...... +...+..+.....
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~--------------- 214 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVL--------------- 214 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHH---------------
Confidence 9999998877654 66677899999999999875322 2222222322221
Q ss_pred HHHHHHhC-CCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 011714 357 VFEKMTKK-VSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALC 416 (479)
Q Consensus 357 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 416 (479)
.. +..--..++-.+-..|-..+++++++.+++.+++.... |.....-++.+|.
T Consensus 215 ------~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 ------GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ------hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 11 11112234556666777888899999999988886433 4555666666665
No 122
>PF12854 PPR_1: PPR repeat
Probab=98.63 E-value=4.9e-08 Score=54.28 Aligned_cols=32 Identities=31% Similarity=0.541 Sum_probs=17.7
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 011714 115 GLAPNSWTFSIMIRCYCNKNDFFEARKVIDCM 146 (479)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 146 (479)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=4.2e-05 Score=63.36 Aligned_cols=251 Identities=13% Similarity=0.106 Sum_probs=155.8
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 011714 167 KSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAME 246 (479)
Q Consensus 167 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 246 (479)
-.|.+..++..-...... +.+...-..+-++|...|.+.....- +... -.|.......+......-++.++-..
T Consensus 20 Y~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~e---I~~~-~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 20 YLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISE---IKEG-KATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccc---cccc-cCChHHHHHHHHHHhhCcchhHHHHH
Confidence 346666666655544432 12333444455666666665433322 2222 13344444444444444444444333
Q ss_pred -HHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011714 247 -LLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFG 325 (479)
Q Consensus 247 -~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 325 (479)
+.+.+.......+......-...|+..|++++|++..+... +......=+..+.+..+++.|...++.|.+-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i- 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI- 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence 33444443333333333444557888899999988877521 3344444455667788889999999998863
Q ss_pred CCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCch
Q 011714 326 FEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRT 405 (479)
Q Consensus 326 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 405 (479)
.+..+++.+..++..... ..+.+.+|.-+|+++.++ ..|++.+.+.+..++...|++++|..+++.++..... ++
T Consensus 167 --ded~tLtQLA~awv~la~-ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dp 241 (299)
T KOG3081|consen 167 --DEDATLTQLAQAWVKLAT-GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DP 241 (299)
T ss_pred --chHHHHHHHHHHHHHHhc-cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CH
Confidence 355677777777765432 335588999999999876 3458888999999999999999999999999887543 66
Q ss_pred HHHHHHHHHHHcCCCHHH-HHHHHHHHHhCC
Q 011714 406 ITFNNVIQALCGEGKIDK-ALLLLFLMYEHA 435 (479)
Q Consensus 406 ~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~ 435 (479)
.+...++.+-...|...+ ..+.+.++....
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 777777666666666544 456666666543
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.60 E-value=2.3e-06 Score=66.96 Aligned_cols=109 Identities=8% Similarity=-0.093 Sum_probs=76.3
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 356 QVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
.++++..+.+ +..+......+...|++++|...|+.+..... .+...|..+..++...|++++|+..|++..+..
T Consensus 14 ~~~~~al~~~----p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVD----PETVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455544442 22344566777778888888888887776532 256677777777888888888888888887765
Q ss_pred CCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 436 KIPSRTSYDMLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 436 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
+.+...+..++.++...|++++|...|+.+++..
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4567777777778888888888888888877743
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.58 E-value=4.5e-06 Score=65.32 Aligned_cols=95 Identities=11% Similarity=-0.109 Sum_probs=64.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011714 88 FNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCK 167 (479)
Q Consensus 88 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 167 (479)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...... +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4455666667777777777777766654 4466666777777777777777777777777653 3466666667777777
Q ss_pred cCChHHHHHHHHHHhhC
Q 011714 168 SGRLKEALEVLDQMGRI 184 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~~ 184 (479)
.|+.++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777776655
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.56 E-value=6.9e-05 Score=73.83 Aligned_cols=183 Identities=8% Similarity=0.046 Sum_probs=141.1
Q ss_pred CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 011714 116 LAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNC 195 (479)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (479)
...+...+..|.....+.|+.++|..+++...+.. |-+......+..++.+.+++++|+..+++..... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 35668899999999999999999999999999864 4467778889999999999999999999999875 556778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 011714 196 LLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGT 275 (479)
Q Consensus 196 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 275 (479)
+..++...|++++|..+|+++...+ +-+..++..+...+...|+.++|...|+...+.. .+....|+.++. +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------D 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------H
Confidence 8899999999999999999999843 2358889999999999999999999999998762 234455555443 2
Q ss_pred hhhHHHHHHHHHhC----CCCCCHhHHHHHHHHHHhc
Q 011714 276 PMKGVGLLKLMKKR----NCLPDKISYSTLLNGLLKW 308 (479)
Q Consensus 276 ~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~ 308 (479)
...-...++++.-. |...........|.-+.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 34445556655433 2333344455555555543
No 127
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.54 E-value=9.5e-05 Score=72.30 Aligned_cols=394 Identities=13% Similarity=0.030 Sum_probs=214.1
Q ss_pred ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 011714 65 PLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYG-LAPNSWTFSIMIRCYCNKNDFFEARKVI 143 (479)
Q Consensus 65 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (479)
+...|...|+...+.+.. +...+..+...|++..+++.|..+.-...+.. ...-...|....-.|...++...|..-|
T Consensus 507 Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~f 585 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEF 585 (1238)
T ss_pred HHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHH
Confidence 446677777777766654 78889999999999999999999844433321 0111233444566788889999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--
Q 011714 144 DCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNI-QTYNCLLKGLCYVGRVEEAYEMLMNVKNDG-- 220 (479)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 220 (479)
+...+.. |.|...|..++.+|.++|++..|.++|.+.... .|+. ..--.....-+..|.+.+++..+.......
T Consensus 586 QsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~ 662 (1238)
T KOG1127|consen 586 QSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSL 662 (1238)
T ss_pred HHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 9999875 558899999999999999999999999988776 3433 222223334567788888888887765421
Q ss_pred ----CCCCHHHHHHHHHHHHccCCH-------HHHHHHHHHHHHCCCCCCHhhHHHHHHHH-------------------
Q 011714 221 ----LKPDVYTYTAVMDGFCKVGRS-------NEAMELLNEAIERGVTPNVVTFNTLFNGY------------------- 270 (479)
Q Consensus 221 ----~~~~~~~~~~li~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~------------------- 270 (479)
..--..++-.+...+.-.|=. +++++.|.-........+...|..+-++|
T Consensus 663 e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il 742 (1238)
T KOG1127|consen 663 ERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIIL 742 (1238)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHH
Confidence 000111221111111112211 22222222222211111222222221111
Q ss_pred ----HhcCCh---h---hHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cC----ChHHHHHHHHHHHHcCCCcCHHH
Q 011714 271 ----CKEGTP---M---KGVGLLKLMKKRNCLPDKISYSTLLNGLLK----WG----KIRPAVSIFKEMVRFGFEVDERM 332 (479)
Q Consensus 271 ----~~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~----~~~~a~~~~~~~~~~~~~~~~~~ 332 (479)
-..+.. + -+.+.+-.-. ....+..+|..+...|.+ .+ +...|...++..++. ..+...
T Consensus 743 ~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~ 818 (1238)
T KOG1127|consen 743 SKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEG 818 (1238)
T ss_pred HHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHH
Confidence 111111 0 0000000000 011123334444333322 11 123455555555432 112222
Q ss_pred HHHHHHHHhcc-----------------------------cchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC
Q 011714 333 MNSLLRGLCMK-----------------------------SWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKG 383 (479)
Q Consensus 333 ~~~l~~~~~~~-----------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (479)
+...+...... .+-+..+++.|...|.......+. |...|-.........
T Consensus 819 ~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eav 897 (1238)
T KOG1127|consen 819 LWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAV 897 (1238)
T ss_pred HHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHH
Confidence 22222222100 012457778888888887776554 556676666666677
Q ss_pred CCHHHHHHHHHHHHH----cCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHh---------CCCCCCHhhHHHHHHHH
Q 011714 384 KKTDEALIHLHHAIE----MGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYE---------HAKIPSRTSYDMLITKL 450 (479)
Q Consensus 384 g~~~~A~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~~~~~l~~~~ 450 (479)
|+.-++..+|..--+ .|-.++..-|.+........|+.++-+.-.+++-. .+.+.+...|...+...
T Consensus 898 G~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstl 977 (1238)
T KOG1127|consen 898 GRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTL 977 (1238)
T ss_pred HHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHH
Confidence 777777777776221 13334444455555555666776655444433322 12244567777777777
Q ss_pred hccCCHhHHHHHHHHHH
Q 011714 451 DQLEKSYDACALYGAAL 467 (479)
Q Consensus 451 ~~~g~~~~A~~~~~~~~ 467 (479)
.+.+.+.+|.++..+.+
T Consensus 978 EhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 978 EHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888877776654
No 128
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.53 E-value=0.00018 Score=68.19 Aligned_cols=107 Identities=15% Similarity=0.122 Sum_probs=49.9
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhh
Q 011714 269 GYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEK 348 (479)
Q Consensus 269 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 348 (479)
+......+.+|+.+++.++.... ...-|-.+...|...|+++.|.++|.+.- .++..+.+|. +.
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~-----k~ 804 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYG-----KA 804 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHh-----cc
Confidence 33445555556665555554432 12334455555666666666655554321 1223334443 44
Q ss_pred ccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHH
Q 011714 349 DLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHL 393 (479)
Q Consensus 349 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 393 (479)
|.+++|.++-.+.. ++......|-.-..-+-++|++.+|.+++
T Consensus 805 ~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 805 GKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred ccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 55555555544332 12222333444444444555555555444
No 129
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.52 E-value=0.00032 Score=66.49 Aligned_cols=108 Identities=17% Similarity=0.229 Sum_probs=64.8
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 011714 163 NSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 242 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 242 (479)
.+.....+|.+|+.+++.+.... .-..-|..+...|...|+++.|.++|-+. ..++-.|.+|.+.|+|+
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 33445566777777777666542 23334566667777777777777777433 12445577777777777
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHH
Q 011714 243 EAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLL 283 (479)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 283 (479)
+|.++-.+.. |.......|-+-..-+-+.|++.+|.+++
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 7777765542 33334455555555555556655555544
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=0.00025 Score=58.48 Aligned_cols=188 Identities=18% Similarity=0.121 Sum_probs=114.2
Q ss_pred cCCHHHHHHHHHHHHh---CC-CCCCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 011714 98 LNEQETAVKFFSEASS---YG-LAPNSW-TFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLK 172 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 172 (479)
..+.++.++++.++.. .| ..++.. .|..++-+....|+.+.|...++.+... ++-+..+-..-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 3455666666666542 23 445544 3455556666777778888887777654 2333333332233344567778
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011714 173 EALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAI 252 (479)
Q Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 252 (479)
+|.++++.+.+.+ +.|..++---+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888777665 445566655555566666666777777766665 34477777777777777778877777777776
Q ss_pred HCCCCCCHhhHHHHHHHHHhcC---ChhhHHHHHHHHHhC
Q 011714 253 ERGVTPNVVTFNTLFNGYCKEG---TPMKGVGLLKLMKKR 289 (479)
Q Consensus 253 ~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~ 289 (479)
-..+ .+...+..+...+.-.| +..-+.++|.+..+.
T Consensus 182 l~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 6532 24444444554443333 445566666666664
No 131
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.48 E-value=0.001 Score=60.97 Aligned_cols=373 Identities=13% Similarity=0.108 Sum_probs=212.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 011714 52 LQAQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYC 131 (479)
Q Consensus 52 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (479)
.....++......+.++....++++...-+ -+...|..-|..-.+.++++....+|.+.... ..+...|...+..-.
T Consensus 21 ~sw~~lire~qt~~~~~~R~~YEq~~~~FP-~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~YVR 97 (656)
T KOG1914|consen 21 DSWSQLIREAQTQPIDKVRETYEQLVNVFP-SSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLSYVR 97 (656)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHHHHH
Confidence 345566666777788999999999986543 37888999999999999999999999998865 455677777776443
Q ss_pred hc-CChhh----HHHHHHHHH-hCCCCC-CHHHHHHHHHH---------HHhcCChHHHHHHHHHHhhCCCCCCHHHHH-
Q 011714 132 NK-NDFFE----ARKVIDCMF-DNGYHP-NVTTFTILVNS---------LCKSGRLKEALEVLDQMGRIGCKPNIQTYN- 194 (479)
Q Consensus 132 ~~-~~~~~----a~~~~~~~~-~~~~~~-~~~~~~~li~~---------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~- 194 (479)
+. |+... ..+.|+-.. +.|..+ +-..|+..+.. +..+.+++...++|.++...-+.-=...|+
T Consensus 98 ~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~D 177 (656)
T KOG1914|consen 98 ETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKD 177 (656)
T ss_pred HHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHH
Confidence 32 22222 223333333 333322 23345444433 334457777777777775431110011111
Q ss_pred -----HHHH-----H--HHhcCCHHHHHHHHHHHHHC--CCCCC---------------HHHHHHHHH------------
Q 011714 195 -----CLLK-----G--LCYVGRVEEAYEMLMNVKND--GLKPD---------------VYTYTAVMD------------ 233 (479)
Q Consensus 195 -----~l~~-----~--~~~~~~~~~a~~~~~~~~~~--~~~~~---------------~~~~~~li~------------ 233 (479)
.-|. - --+...+..|.++++++... |+... ...|..+|.
T Consensus 178 Y~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~ 257 (656)
T KOG1914|consen 178 YEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDG 257 (656)
T ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 0000 0 01122334444444443221 11100 001111111
Q ss_pred -------------------------------------HHHccCC-------HHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 011714 234 -------------------------------------GFCKVGR-------SNEAMELLNEAIERGVTPNVVTFNTLFNG 269 (479)
Q Consensus 234 -------------------------------------~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (479)
.+...|+ .+++..+++..+..-..-+..+|..+.+.
T Consensus 258 ~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~ 337 (656)
T KOG1914|consen 258 TMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADY 337 (656)
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1112222 23444444444332111222333333221
Q ss_pred HHhc---CChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHhcccc
Q 011714 270 YCKE---GTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEV-DERMMNSLLRGLCMKSW 345 (479)
Q Consensus 270 ~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 345 (479)
--.. ...+....+++++...-..--..+|..+++...+..-.+.|+.+|.++.+.+..+ +..+..+++..++
T Consensus 338 eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c---- 413 (656)
T KOG1914|consen 338 EESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC---- 413 (656)
T ss_pred HHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh----
Confidence 1111 1245555566665544222234466677777777777888888888888777666 6677777777775
Q ss_pred hhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHcCCCHHH
Q 011714 346 EEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPR--TITFNNVIQALCGEGKIDK 423 (479)
Q Consensus 346 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 423 (479)
.++.+-|.++|+.-.++-.. ++.--...+..+...++-..+..+|++.+..++.|+ ..+|..++.-=..-|+.+.
T Consensus 414 --skD~~~AfrIFeLGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 414 --SKDKETAFRIFELGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred --cCChhHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 37778888888865544222 445556677777788888888888888887755544 3678888887788888888
Q ss_pred HHHHHHHHHhC
Q 011714 424 ALLLLFLMYEH 434 (479)
Q Consensus 424 a~~~~~~~~~~ 434 (479)
++++-+++...
T Consensus 491 i~~lekR~~~a 501 (656)
T KOG1914|consen 491 ILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHh
Confidence 88887776654
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.47 E-value=5.4e-05 Score=74.57 Aligned_cols=184 Identities=13% Similarity=0.087 Sum_probs=144.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHH
Q 011714 81 TNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTI 160 (479)
Q Consensus 81 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (479)
...++..+..|.....+.|.+++|..+++...+.. +-+......+...+.+.+++++|+..+++..... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 34468999999999999999999999999999874 4457788889999999999999999999999875 457888889
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 011714 161 LVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 240 (479)
Q Consensus 161 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 240 (479)
+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+.. .+....|+.++. +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------D 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------H
Confidence 9999999999999999999999853 4458899999999999999999999999998752 334455555442 3
Q ss_pred HHHHHHHHHHHHHC----CCCCCHhhHHHHHHHHHhcC
Q 011714 241 SNEAMELLNEAIER----GVTPNVVTFNTLFNGYCKEG 274 (479)
Q Consensus 241 ~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g 274 (479)
...-..+++.+.-. |.+..+.....+|..|.+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 34445556555332 33344455666666665543
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=0.00013 Score=60.13 Aligned_cols=188 Identities=13% Similarity=0.122 Sum_probs=104.7
Q ss_pred cCCHHHHHHHHHHHHHC---C-CCCCHh-hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChH
Q 011714 238 VGRSNEAMELLNEAIER---G-VTPNVV-TFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIR 312 (479)
Q Consensus 238 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 312 (479)
..+.++..+++.+++.. | ..++.. .|..++-+....|+.+.|...++.+...- +-+...-..-.--+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 44667777777766542 3 333433 34455556666777777777777776652 212222111112234467777
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHH
Q 011714 313 PAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIH 392 (479)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 392 (479)
+|.++++.+++.+ +.|..++..-+...- ..|..-+|++-+....+.-+ .|...|.-+...|...|++++|.-.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilk-----a~GK~l~aIk~ln~YL~~F~-~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILK-----AQGKNLEAIKELNEYLDKFM-NDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHH-----HcCCcHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 7777777777654 223333333332221 33555566666666555433 3777777777777777777777777
Q ss_pred HHHHHHcCCCC-chHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCC
Q 011714 393 LHHAIEMGHIP-RTITFNNVIQALCG---EGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 393 ~~~~~~~~~~p-~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~ 435 (479)
+++++-. .| ++..+..+...+.- ..+.+.+.+++.+..+..
T Consensus 177 lEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 177 LEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 7777653 23 33444444444332 334556677777777654
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=0.00021 Score=64.59 Aligned_cols=111 Identities=20% Similarity=0.220 Sum_probs=48.9
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 011714 132 NKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN-IQTYNCLLKGLCYVGRVEEAY 210 (479)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 210 (479)
..|+.++|+..++.+.+. .|-|+..+......+.+.|+..+|.+.++++... .|+ ...+-.+..+|.+.|++.+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence 344444444444444433 1223344444444444444444444444444443 222 333334444444444444444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 011714 211 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAME 246 (479)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 246 (479)
.+++...... +-|...|..|..+|...|+..++..
T Consensus 395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHH
Confidence 4444444332 2244444444444444444444433
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.41 E-value=2.1e-05 Score=61.18 Aligned_cols=98 Identities=18% Similarity=0.175 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS 164 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (479)
......+...+...|++++|.+.|+.+...+ +.+...+..+...+...|++++|...++...+.+ +.+...+..+..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3444455555556666666666666655543 3455555666666666666666666666655543 3345555555556
Q ss_pred HHhcCChHHHHHHHHHHhhC
Q 011714 165 LCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~ 184 (479)
+...|++++|...|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666655554
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.38 E-value=2.7e-05 Score=60.55 Aligned_cols=98 Identities=13% Similarity=0.040 Sum_probs=55.1
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKG 199 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (479)
......+...+...|++++|.+.++.+...+ +.+...+..+..++...|++++|...+++..+.+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3444455555556666666666666655543 3355555556666666666666666666555443 3344555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 011714 200 LCYVGRVEEAYEMLMNVKND 219 (479)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~ 219 (479)
+...|++++|...|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666555543
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.37 E-value=2.7e-05 Score=61.18 Aligned_cols=119 Identities=18% Similarity=0.089 Sum_probs=89.3
Q ss_pred hhccHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHcCCCHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTD--PGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPR--TITFNNVIQALCGEGKID 422 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~ 422 (479)
..++...+...++.+....+... ....-.+...+...|++++|...|+.+......|+ ......+...+...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 34778888888888887654421 23344466788899999999999999998653332 234556778889999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHH
Q 011714 423 KALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAAL 467 (479)
Q Consensus 423 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (479)
+|+..++..... ......+...+.+|.+.|++++|...|+.++
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999774332 3455677888999999999999999998764
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=9.5e-05 Score=66.78 Aligned_cols=112 Identities=19% Similarity=0.216 Sum_probs=59.8
Q ss_pred hccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHcCCCHHHHHH
Q 011714 348 KDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPR-TITFNNVIQALCGEGKIDKALL 426 (479)
Q Consensus 348 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~ 426 (479)
.|.++.|+..++.+....+. |+..+......+.+.++.++|.+.+++++.. .|+ ......+..++.+.|++.+|++
T Consensus 319 ~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred hcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHH
Confidence 35555566555555554333 4455555555555666666666666655553 233 3344455555556666666666
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHH
Q 011714 427 LLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALY 463 (479)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 463 (479)
+++...... +.++..|..|..+|..+|+..+|....
T Consensus 396 ~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 396 ILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 555555443 345555555555555555544444433
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.33 E-value=0.0039 Score=60.88 Aligned_cols=201 Identities=14% Similarity=0.149 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 011714 51 SLQAQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCY 130 (479)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (479)
...+-.-+..++.|+.++|..+++.....+.. |..+...+-..|.+.++.++|..+|++..+. .|+......+..+|
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmay 120 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAY 120 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHH
Confidence 44455566778999999999999998876666 8899999999999999999999999999876 67788888888899
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhhCC-CCCCHHHHHHHHHH
Q 011714 131 CNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGR----------LKEALEVLDQMGRIG-CKPNIQTYNCLLKG 199 (479)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~ 199 (479)
.+.+.+.+-.++--++-+. .+-++..+-++++.....-. ..-|.+.++.+.+.+ ---+..-...-...
T Consensus 121 vR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~i 199 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLI 199 (932)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHH
Confidence 9988887655554444442 34455555555555543211 223444555555432 11111122222333
Q ss_pred HHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 011714 200 LCYVGRVEEAYEMLM-NVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERG 255 (479)
Q Consensus 200 ~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 255 (479)
+...|++++|..++. ...+.-...+...-+.-+..+...+++.+..++-.++...|
T Consensus 200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 455677777777773 33322222233333444555556666666666655555554
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.26 E-value=0.0001 Score=57.89 Aligned_cols=115 Identities=16% Similarity=0.108 Sum_probs=51.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChH
Q 011714 98 LNEQETAVKFFSEASSYGLAPN---SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPN--VTTFTILVNSLCKSGRLK 172 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~ 172 (479)
.++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......++ ......|..++...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 455555555555555432 111 12222233445555555555555555554431111 112233444555555555
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011714 173 EALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMN 215 (479)
Q Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 215 (479)
+|+..++..... ......+......+.+.|++++|...|+.
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555443222 12233344444555555555555555543
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.24 E-value=6e-05 Score=68.58 Aligned_cols=115 Identities=16% Similarity=0.063 Sum_probs=92.6
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALL 426 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 426 (479)
..++++.|..+|+++.+..+ .....+++.+...++-.+|++++++.+... +.+...+..-...|.+.++++.|+.
T Consensus 181 ~t~~~~~ai~lle~L~~~~p----ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~ 255 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDP----EVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELALE 255 (395)
T ss_pred hcccHHHHHHHHHHHHhcCC----cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 45788999999999988752 345667888888888899999999888652 3356666767777889999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHH
Q 011714 427 LLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAAL 467 (479)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (479)
+.+++.+.. +.+..+|..|..+|.+.|++++|+-.++.+-
T Consensus 256 iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 256 IAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999875 4466789999999999999999998888654
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.17 E-value=0.00012 Score=66.80 Aligned_cols=127 Identities=13% Similarity=0.161 Sum_probs=94.9
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 011714 121 WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGL 200 (479)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (479)
.....|+..+...++++.|..+++++.+.. |+ ....++..+...++-.+|++++++..+.. +.+...+..-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344556666777788888888888888763 44 44457777777788888888888887653 44667777777778
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 011714 201 CYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIE 253 (479)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 253 (479)
.+.++++.|+++.+++.... +-+..+|..|..+|...|+++.|+..+..+.-
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 88888888888888888763 22566888888888888888888888877653
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.13 E-value=5.2e-06 Score=46.53 Aligned_cols=33 Identities=27% Similarity=0.522 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEASSYGLAP 118 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~ 118 (479)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777766665
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=6.2e-06 Score=46.58 Aligned_cols=33 Identities=27% Similarity=0.509 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011714 87 DFNDLLMALVMLNEQETAVKFFSEASSYGLAPN 119 (479)
Q Consensus 87 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~ 119 (479)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.04 E-value=9e-06 Score=45.53 Aligned_cols=31 Identities=32% Similarity=0.561 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 011714 157 TFTILVNSLCKSGRLKEALEVLDQMGRIGCK 187 (479)
Q Consensus 157 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 187 (479)
+|+.++.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444443
No 146
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.03 E-value=1.1e-05 Score=45.45 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=22.6
Q ss_pred hHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCC
Q 011714 442 SYDMLITKLDQLEKSYDACALYGAALKQGVIPQ 474 (479)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 474 (479)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666677777777777777777766666665
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.03 E-value=1.1e-05 Score=56.46 Aligned_cols=82 Identities=20% Similarity=0.175 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHH
Q 011714 383 GKKTDEALIHLHHAIEMGHI-PRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACA 461 (479)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 461 (479)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|+.++++ .+.+ +.+......++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777777777765331 2344455567777777777777777776 3222 1233444455677777777777777
Q ss_pred HHHHH
Q 011714 462 LYGAA 466 (479)
Q Consensus 462 ~~~~~ 466 (479)
+++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 77653
No 148
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.99 E-value=0.016 Score=55.12 Aligned_cols=226 Identities=12% Similarity=0.059 Sum_probs=146.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHH-------
Q 011714 55 QRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMI------- 127 (479)
Q Consensus 55 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~------- 127 (479)
+...+.+..-.+++|.+..+. .|.+..|..|.......-.++.|...|-+.... +.......|-
T Consensus 668 rD~~~Lve~vgledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~ 738 (1189)
T KOG2041|consen 668 RDVMNLVEAVGLEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQ 738 (1189)
T ss_pred hhHHHHHHHhchHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHH
Confidence 334444556667777776654 578899999999998888899998888776543 2221111111
Q ss_pred ---HHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhc
Q 011714 128 ---RCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRI-GCKPNIQTYNCLLKGLCYV 203 (479)
Q Consensus 128 ---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 203 (479)
..-+--|++++|+++|-++-+++ ..|..+.+.|++-.+.++++.-... .-..-..+|+.+...+...
T Consensus 739 q~aei~~~~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~ 809 (1189)
T KOG2041|consen 739 QRAEISAFYGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEM 809 (1189)
T ss_pred HhHhHhhhhcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHH
Confidence 11223488999999998886553 2456777888888877776542111 0011235788888888989
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHH
Q 011714 204 GRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLL 283 (479)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 283 (479)
..|++|.++|..... . ...+.++.+..++++-+.+...+.+ +....-.+.+++...|.-++|.+.+
T Consensus 810 ~~We~A~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 810 MEWEEAAKYYSYCGD------T---ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHH
Confidence 999999998876532 1 2356777777777766665555432 4555667778888888888887766
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 011714 284 KLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEM 321 (479)
Q Consensus 284 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (479)
-+. +.+ ...+..|...+++.+|.++-+..
T Consensus 876 Lr~---s~p------kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 876 LRR---SLP------KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred Hhc---cCc------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 432 211 23455677777777777765543
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.98 E-value=0.00013 Score=52.45 Aligned_cols=96 Identities=23% Similarity=0.099 Sum_probs=75.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQ 452 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 452 (479)
+..++..+...|++++|...++++.+... .+...+..+..++...|++++|.+.++...+.. +.+...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 55667778888999999999998877532 234667778888888899999999999888765 4455678888888999
Q ss_pred cCCHhHHHHHHHHHHhCC
Q 011714 453 LEKSYDACALYGAALKQG 470 (479)
Q Consensus 453 ~g~~~~A~~~~~~~~~~~ 470 (479)
.|++++|...++..++..
T Consensus 81 ~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 81 LGKYEEALEAYEKALELD 98 (100)
T ss_pred HHhHHHHHHHHHHHHccC
Confidence 999999999998887643
No 150
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.97 E-value=0.00015 Score=66.35 Aligned_cols=120 Identities=18% Similarity=0.134 Sum_probs=57.0
Q ss_pred CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 011714 118 PNSWTFSIMIRCYCNKNDFFEARKVIDCMFDN--GYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNC 195 (479)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (479)
.+......++..+....+++.+..++-+.... ....-..+..++++.|.+.|..+++++++..=...|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 33444444444444444455555544444432 1111222334555555555555555555555555555555555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 011714 196 LLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK 237 (479)
Q Consensus 196 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 237 (479)
|+..+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 555555555555555555555444444344444444444433
No 151
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.97 E-value=0.00016 Score=66.17 Aligned_cols=125 Identities=22% Similarity=0.220 Sum_probs=102.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 011714 149 NGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRI--GCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVY 226 (479)
Q Consensus 149 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 226 (479)
.+.+.+......+++.+....+++.+..++.+.... ....-..|..++++.|...|..++++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344667778888888888888899999999988765 222233456799999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 011714 227 TYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKE 273 (479)
Q Consensus 227 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (479)
+++.|++.+.+.|++..|.++..+|...+...+..++..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999988776666777776666666655
No 152
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.96 E-value=0.0002 Score=55.26 Aligned_cols=86 Identities=12% Similarity=-0.041 Sum_probs=52.9
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALL 426 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 426 (479)
..|++++|..+|+.+...++. +...|-.|..++-..|++++|+..|..+....+ -|+..+-.+..++...|+.+.|++
T Consensus 47 ~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A~~ 124 (157)
T PRK15363 47 EVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYAIK 124 (157)
T ss_pred HCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHHH
Confidence 456666666666666655444 455566666666666666666666666665542 245556666666666666666666
Q ss_pred HHHHHHhC
Q 011714 427 LLFLMYEH 434 (479)
Q Consensus 427 ~~~~~~~~ 434 (479)
.|+..+..
T Consensus 125 aF~~Ai~~ 132 (157)
T PRK15363 125 ALKAVVRI 132 (157)
T ss_pred HHHHHHHH
Confidence 66666554
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.95 E-value=0.00048 Score=51.97 Aligned_cols=98 Identities=13% Similarity=0.079 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC--CCHHHHHHHH
Q 011714 87 DFNDLLMALVMLNEQETAVKFFSEASSYGL--APNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYH--PNVTTFTILV 162 (479)
Q Consensus 87 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li 162 (479)
++..+...+.+.|++++|...|+.+.+... +.....+..+..++.+.|+++.|...++.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 345555566666666666666666654321 001234455566666666666666666666543211 1134455555
Q ss_pred HHHHhcCChHHHHHHHHHHhhC
Q 011714 163 NSLCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~ 184 (479)
.++.+.|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5566666666666666666554
No 154
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.93 E-value=5.1e-05 Score=64.20 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=92.0
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHcCCCHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPR-TITFNNVIQALCGEGKIDKAL 425 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~ 425 (479)
+.+++++|+..|...+...+. |.+.|..-..+|.+.|.++.|++-.+..+.. .|. ..+|..|..+|...|++++|+
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHHH
Confidence 568899999999999988766 7888999999999999999999988888874 343 568999999999999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHH-HHhccCCHh---HHHHHHHHHHhCCCCCCC
Q 011714 426 LLLFLMYEHAKIPSRTSYDMLIT-KLDQLEKSY---DACALYGAALKQGVIPQR 475 (479)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~---~A~~~~~~~~~~~~~p~~ 475 (479)
+.|++.++.. |+-.+|-.=+. +=.+.+..+ .+..-++..-..|..|+.
T Consensus 170 ~aykKaLeld--P~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 170 EAYKKALELD--PDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHhhhccC--CCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 9999988864 55555543333 333334333 444445554445555554
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.91 E-value=0.00029 Score=50.44 Aligned_cols=92 Identities=17% Similarity=0.209 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011714 89 NDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKS 168 (479)
Q Consensus 89 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (479)
..+...+...|++++|+..++++.+.. +.+...+..+..++...+++++|.+.++...... +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 344445555555566665555555432 2233444555555555555555555555555432 22334444555555555
Q ss_pred CChHHHHHHHHHHh
Q 011714 169 GRLKEALEVLDQMG 182 (479)
Q Consensus 169 g~~~~a~~~~~~~~ 182 (479)
|+.++|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 55555555555444
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.87 E-value=0.00047 Score=52.03 Aligned_cols=98 Identities=13% Similarity=0.003 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC--CCHhhHHHHHH
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIEMGHI--PRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKI--PSRTSYDMLIT 448 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 448 (479)
+...+..+...|++++|.+.+..+...... .....+..+..++.+.|+++.|...++.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 445556666677777777777776653211 01234555666677777777777777776654311 12345666666
Q ss_pred HHhccCCHhHHHHHHHHHHhCC
Q 011714 449 KLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 449 ~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
++.+.|++++|...++++++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC
Confidence 6777777777777777776653
No 157
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.84 E-value=0.00035 Score=49.97 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=17.3
Q ss_pred HHhcCChhhHHHHHHHHHhCCC-CCCHHHHHHHHHHHH
Q 011714 130 YCNKNDFFEARKVIDCMFDNGY-HPNVTTFTILVNSLC 166 (479)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~ 166 (479)
|...+++...-.+|+.+++.|+ .|+..+|+.++.+.+
T Consensus 35 ~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~ 72 (120)
T PF08579_consen 35 CFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIA 72 (120)
T ss_pred HHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 3333444444444444444444 444444444444443
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.0003 Score=59.68 Aligned_cols=102 Identities=18% Similarity=0.155 Sum_probs=80.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHH-HHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 011714 303 NGLLKWGKIRPAVSIFKEMVRFGFEVDERM-MNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLG 381 (479)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (479)
.-..+.+++.+|...|.+.++. .|...+ |.--..+|+ +.|.++.|++-.+.....++. ...+|..|..+|.
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~-----~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~ 160 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYS-----KLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHH-----HhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHH
Confidence 3467899999999999999985 555544 444555554 779999999999888877554 5578999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 011714 382 KGKKTDEALIHLHHAIEMGHIPRTITFNNVIQA 414 (479)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 414 (479)
..|++++|++.|++.++ +.|+..+|..=+..
T Consensus 161 ~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred ccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 99999999999999887 57777777655543
No 159
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.81 E-value=0.011 Score=50.69 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=27.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhH---HHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 91 LLMALVMLNEQETAVKFFSEASSYGLAPNSWTF---SIMIRCYCNKNDFFEARKVIDCMFDN 149 (479)
Q Consensus 91 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (479)
....+...|++++|++.|+++...- +-+.... -.++.++.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3444444555555555555555432 1111111 23344555555555555555555544
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.81 E-value=0.0008 Score=61.58 Aligned_cols=91 Identities=11% Similarity=0.072 Sum_probs=59.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 011714 92 LMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRL 171 (479)
Q Consensus 92 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 171 (479)
...+...|+++.|+..|+++++.. +.+...|..+..+|...|++++|+..++.++... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 344556677777777777776654 4456666666677777777777777777776653 33556666666677777777
Q ss_pred HHHHHHHHHHhhC
Q 011714 172 KEALEVLDQMGRI 184 (479)
Q Consensus 172 ~~a~~~~~~~~~~ 184 (479)
++|+..|++..+.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776665
No 161
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.80 E-value=0.00046 Score=49.38 Aligned_cols=72 Identities=14% Similarity=0.271 Sum_probs=33.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcC--------ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011714 95 LVMLNEQETAVKFFSEASSYGL-APNSWTFSIMIRCYCNKN--------DFFEARKVIDCMFDNGYHPNVTTFTILVNSL 165 (479)
Q Consensus 95 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (479)
+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|++|...+++|+..+|+.++..+
T Consensus 35 ~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 35 CFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3333444444445555544444 444555554444443321 1223444555555555555555555555444
Q ss_pred H
Q 011714 166 C 166 (479)
Q Consensus 166 ~ 166 (479)
.
T Consensus 115 l 115 (120)
T PF08579_consen 115 L 115 (120)
T ss_pred H
Confidence 3
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.80 E-value=0.00043 Score=63.31 Aligned_cols=87 Identities=15% Similarity=-0.020 Sum_probs=76.0
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALL 426 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 426 (479)
..|+++.|+..|++....++. +...|..+..+|...|++++|+..+++++.... .+...|..+..+|...|++++|+.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 669999999999999987665 678888999999999999999999999988632 256778888999999999999999
Q ss_pred HHHHHHhCC
Q 011714 427 LLFLMYEHA 435 (479)
Q Consensus 427 ~~~~~~~~~ 435 (479)
.|++.++..
T Consensus 92 ~~~~al~l~ 100 (356)
T PLN03088 92 ALEKGASLA 100 (356)
T ss_pred HHHHHHHhC
Confidence 999999875
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.79 E-value=0.00097 Score=58.76 Aligned_cols=128 Identities=12% Similarity=0.101 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH-HHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011714 87 DFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRC-YCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSL 165 (479)
Q Consensus 87 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (479)
+|-.++...-+.+..+.|..+|.++.+.+ ..+...|...... +...++.+.|.++|+...+. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34445555555555555555555554322 1122222222222 12233444455555555443 333445555555555
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011714 166 CKSGRLKEALEVLDQMGRIGCKPNI---QTYNCLLKGLCYVGRVEEAYEMLMNVK 217 (479)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~ 217 (479)
.+.|+.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+.++.+++.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555433 11111 244444444444444444444444443
No 164
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.0016 Score=55.78 Aligned_cols=113 Identities=14% Similarity=0.062 Sum_probs=90.9
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHc---CCCHHHHHHHHHHHH
Q 011714 356 QVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCG---EGKIDKALLLLFLMY 432 (479)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~ 432 (479)
.-++.-...++. |...|-.|...|...|+++.|..-|++..+.. .+++..+..+..++.. .....++..+|+++.
T Consensus 143 a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 143 ARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 334444455555 88999999999999999999999999998762 3466677777766553 334678999999999
Q ss_pred hCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCC
Q 011714 433 EHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGV 471 (479)
Q Consensus 433 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 471 (479)
..+ +-++.+...|...+...|++.+|...|+.|++..-
T Consensus 221 ~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 221 ALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred hcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 886 66888999999999999999999999999998753
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.78 E-value=0.0019 Score=61.88 Aligned_cols=62 Identities=18% Similarity=0.074 Sum_probs=31.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 011714 371 GTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (479)
..|..+.......|++++|...++++.+. .|+...|..+..++...|+.++|...+++....
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44444444444445555555555555543 234445555555555555555555555555544
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.75 E-value=0.0018 Score=57.39 Aligned_cols=133 Identities=12% Similarity=0.170 Sum_probs=70.4
Q ss_pred HHHHHHHHHHcc-CCHHHHHHHHHHHHHC----CCC-CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-----CCH
Q 011714 227 TYTAVMDGFCKV-GRSNEAMELLNEAIER----GVT-PNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCL-----PDK 295 (479)
Q Consensus 227 ~~~~li~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~ 295 (479)
.+..+...|-.. |++++|++.|++..+. +.. .-..++..+...+.+.|++++|+++|+++...... .+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344555566666 7888888888776552 211 01234566677788888888888888887654221 122
Q ss_pred h-HHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCc--CHHHHHHHHHHHhcccchhhccHHHHHHHHHHHH
Q 011714 296 I-SYSTLLNGLLKWGKIRPAVSIFKEMVRFG--FEV--DERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMT 362 (479)
Q Consensus 296 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~ 362 (479)
. .+...+-++...||...|...+++..... +.. .......++.++-.. ....++.+..-|+.+.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~---D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG---DVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT----CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC---CHHHHHHHHHHHcccC
Confidence 1 22333445666788888888888776432 211 234445555555211 2333444444444433
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.73 E-value=0.0011 Score=53.74 Aligned_cols=97 Identities=15% Similarity=0.106 Sum_probs=63.3
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011714 371 GTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPR--TITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLIT 448 (479)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (479)
..+..+...+...|++++|...++++.+....+. ...+..+..++.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 4566667777777888888888877765432222 3466777777777788888888877777654 334556666666
Q ss_pred HHhccCC--------------HhHHHHHHHHHHh
Q 011714 449 KLDQLEK--------------SYDACALYGAALK 468 (479)
Q Consensus 449 ~~~~~g~--------------~~~A~~~~~~~~~ 468 (479)
++...|+ +++|.++++++++
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 6666655 4556666665554
No 168
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.72 E-value=4.8e-05 Score=41.39 Aligned_cols=27 Identities=33% Similarity=0.757 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 263 FNTLFNGYCKEGTPMKGVGLLKLMKKR 289 (479)
Q Consensus 263 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (479)
|+.++++|++.|++++|.+++++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444433
No 169
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=5.2e-05 Score=41.26 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011714 87 DFNDLLMALVMLNEQETAVKFFSEASSYG 115 (479)
Q Consensus 87 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 115 (479)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666665554
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.70 E-value=0.0018 Score=50.08 Aligned_cols=97 Identities=13% Similarity=0.050 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS 164 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (479)
......+...+...|++++|.++|+.+.... +-+..-|..|.-++-..|++.+|+..|......+ +-|+..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3445556666666777777777777776654 4455566667777777777777777777776655 3466666667777
Q ss_pred HHhcCChHHHHHHHHHHhh
Q 011714 165 LCKSGRLKEALEVLDQMGR 183 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~ 183 (479)
+...|+.+.|.+.|+..+.
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777776554
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.69 E-value=6.7e-05 Score=52.55 Aligned_cols=82 Identities=16% Similarity=0.135 Sum_probs=59.9
Q ss_pred hccHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHH
Q 011714 348 KDLLEDAYQVFEKMTKKVSV-TDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALL 426 (479)
Q Consensus 348 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 426 (479)
.|+++.|+.+++++....+. ++...+-.+..++.+.|++++|+.++++ .+.+. .+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 47889999999999876553 2445566689999999999999999988 32222 133444455788999999999999
Q ss_pred HHHHH
Q 011714 427 LLFLM 431 (479)
Q Consensus 427 ~~~~~ 431 (479)
++++.
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 98763
No 172
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.0061 Score=50.86 Aligned_cols=145 Identities=13% Similarity=0.033 Sum_probs=102.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh
Q 011714 262 TFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLC 341 (479)
Q Consensus 262 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (479)
..+.++.++...|.+.-.+..+++..+...+.++.....+.+.-.+.||.+.|...|++..+..-..+..+.+.++..-.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 45667777777888888888888888876666777888888888888888888888887765444444444444444333
Q ss_pred cccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHH
Q 011714 342 MKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFN 409 (479)
Q Consensus 342 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 409 (479)
...+..++++..|...++++...+.. ++...|.-.-+....|+..+|++.++.|+.. .|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 32334567888888888888776655 6666666666677778899999999888874 44444444
No 173
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.67 E-value=0.025 Score=48.61 Aligned_cols=184 Identities=10% Similarity=0.014 Sum_probs=100.1
Q ss_pred CcchHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 011714 48 NPRSLQAQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSD---FNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFS 124 (479)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 124 (479)
.+....+..-...+..|+.++|+..|+.+....+.. ... .-.+..++.+.+++++|+..|++..+....-...-+.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 344455566777788999999999999998765543 222 2456788899999999999999998763222222333
Q ss_pred HHHHHHHh--cC---------------C---hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 011714 125 IMIRCYCN--KN---------------D---FFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 125 ~l~~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 184 (479)
..+.+.+. .+ + ...|...|+.+++. |=...-..+|...+..+...
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH
Confidence 33333321 11 1 11222333333322 22222233333333333211
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 011714 185 GCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND--GLKPDVYTYTAVMDGFCKVGRSNEAMELLNEA 251 (479)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 251 (479)
. ..--..+.+.|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+
T Consensus 174 ---l-a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 ---L-AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred ---H-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0 001113445566666666666666666654 22223445555666666666666666655443
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.66 E-value=0.0022 Score=47.82 Aligned_cols=90 Identities=19% Similarity=0.097 Sum_probs=42.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHhc
Q 011714 377 IRTLGKGKKTDEALIHLHHAIEMGHIPR--TITFNNVIQALCGEGKIDKALLLLFLMYEHAKI--PSRTSYDMLITKLDQ 452 (479)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 452 (479)
..++-..|+.++|+.+|++....|.... ...+..+..++...|++++|+.++++....... .+......+.-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3444455555555555555555544322 223444445555555555555555555543211 011222222334455
Q ss_pred cCCHhHHHHHHHHH
Q 011714 453 LEKSYDACALYGAA 466 (479)
Q Consensus 453 ~g~~~~A~~~~~~~ 466 (479)
.|+.++|++.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 55555555555443
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.66 E-value=0.0068 Score=58.17 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 011714 191 QTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIE 253 (479)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 253 (479)
.+|..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444333334444555555554444432 3444444444444445555555554444444
No 176
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0047 Score=54.94 Aligned_cols=159 Identities=13% Similarity=0.037 Sum_probs=90.1
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH---HHHhc
Q 011714 268 NGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLN--GLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLL---RGLCM 342 (479)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~ 342 (479)
.++.-.|+.++|.+.--...+.. ....+..+++ ++.-.++.+.+...|.+.++.+ |+........ ..+-.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence 35566788888877766666653 2223333443 3345677788888888877653 4333222211 11110
Q ss_pred c-----cchhhccHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHH---HHHH
Q 011714 343 K-----SWEEKDLLEDAYQVFEKMTKKVS---VTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTIT---FNNV 411 (479)
Q Consensus 343 ~-----~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l 411 (479)
. ...+.|.+..|.+.|......++ .++...|.....+..+.|+..+|+.-.+.+... |+.- |..-
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~r 327 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRR 327 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHH
Confidence 0 01245777777777777665432 344455666666777777777777777766552 2221 2222
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 412 IQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
..++...++|++|.+-+++..+..
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 235556677777777777776654
No 177
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.65 E-value=0.004 Score=50.53 Aligned_cols=92 Identities=15% Similarity=0.084 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN--SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTIL 161 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (479)
....+..+...+...|++++|+..|++..+....+. ...+..+..++.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 455677788888889999999999998876532222 4578888888889999999999998888753 3356667777
Q ss_pred HHHHHhcCChHHHHH
Q 011714 162 VNSLCKSGRLKEALE 176 (479)
Q Consensus 162 i~~~~~~g~~~~a~~ 176 (479)
..++...|+...+..
T Consensus 113 g~~~~~~g~~~~a~~ 127 (172)
T PRK02603 113 AVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHcCChHhHhh
Confidence 777777776544443
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.64 E-value=0.0012 Score=53.33 Aligned_cols=97 Identities=20% Similarity=0.076 Sum_probs=73.4
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC--chHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 011714 370 PGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIP--RTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLI 447 (479)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 447 (479)
...|..++..+...|++++|+..++++......+ ...++..+..++...|++++|+..+++..... +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3557778888888999999999999988653222 23578888899999999999999999998764 33456666777
Q ss_pred HHHh-------ccCCHhHHHHHHHHHH
Q 011714 448 TKLD-------QLEKSYDACALYGAAL 467 (479)
Q Consensus 448 ~~~~-------~~g~~~~A~~~~~~~~ 467 (479)
..+. ..|++++|...+++++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 6766 7888886666665543
No 179
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.63 E-value=0.0014 Score=57.76 Aligned_cols=47 Identities=11% Similarity=0.062 Sum_probs=18.9
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011714 170 RLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVK 217 (479)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 217 (479)
+.+.|..+|+...+. .+.+...|...+..+.+.++.+.|..+|+...
T Consensus 51 d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i 97 (280)
T PF05843_consen 51 DPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAI 97 (280)
T ss_dssp -HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 333344444444432 12333444444444444444444444444444
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.63 E-value=0.0016 Score=52.62 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 011714 88 FNDLLMALVMLNEQETAVKFFSEAS 112 (479)
Q Consensus 88 ~~~ll~~~~~~~~~~~A~~~~~~~~ 112 (479)
|..+...+...|++++|+..|++..
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al 62 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAM 62 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333444444444444444443
No 181
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.61 E-value=0.00026 Score=47.32 Aligned_cols=63 Identities=19% Similarity=0.117 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC-CHhHHHHHHHHHHh
Q 011714 405 TITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLE-KSYDACALYGAALK 468 (479)
Q Consensus 405 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 468 (479)
+.+|..+...+...|++++|+..|++.++.+ +.+...|..+..++.+.| ++++|++.++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4456666666666666666666666666654 335556666666666666 56666666666655
No 182
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.59 E-value=0.00099 Score=54.08 Aligned_cols=105 Identities=14% Similarity=0.225 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH
Q 011714 82 NWSVSDFNDLLMALVML-----NEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVT 156 (479)
Q Consensus 82 ~~~~~~~~~ll~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 156 (479)
..+..+|..+++.+.+. |..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 34667777777777653 4555555666666667777777777776666543 2211 111111111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 011714 157 TFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGR 205 (479)
Q Consensus 157 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 205 (479)
. ---.+.+-|++++++|...|+-||..++..++..+.+.+.
T Consensus 113 -----~---hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 -----M---HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -----c---cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0 0123456677777777777777777777777777766554
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.59 E-value=0.0036 Score=55.41 Aligned_cols=205 Identities=15% Similarity=0.090 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHH
Q 011714 226 YTYTAVMDGFCKVGRSNEAMELLNEAIER----GVTP-NVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYST 300 (479)
Q Consensus 226 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 300 (479)
..|......|...+++++|.+.|....+. +-.. -...|.....+|.+. ++++|+..++ .
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~---------------~ 99 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYE---------------K 99 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHH---------------H
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHH---------------H
Confidence 44555566666666777776666665331 1000 011222222222222 4444444333 3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhh-ccHHHHHHHHHHHHhC---CCCC--ChhhHH
Q 011714 301 LLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEK-DLLEDAYQVFEKMTKK---VSVT--DPGTYG 374 (479)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~a~~~~~~~~~~---~~~~--~~~~~~ 374 (479)
.+..|...|++..|-..+..+-+ .+ ... |+++.|.+.|++.... ...+ -...+.
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA~---------------~y-----e~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~ 159 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELAE---------------IY-----EEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLL 159 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHH---------------HH-----CCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHH---------------HH-----HHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHH
Confidence 33456666666666666555432 12 233 6777777777765431 1111 124567
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCC-----ch-HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC----CCCHhhHH
Q 011714 375 IVIRTLGKGKKTDEALIHLHHAIEMGHIP-----RT-ITFNNVIQALCGEGKIDKALLLLFLMYEHAK----IPSRTSYD 444 (479)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~ 444 (479)
.++..+.+.|++++|+++|+++....... +. ..+...+-++...||+..|.+.+++...... ........
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~ 239 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLE 239 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 78888999999999999999887653221 11 1233444466778999999999999886542 22345567
Q ss_pred HHHHHHhcc--CCHhHHHHHHHHH
Q 011714 445 MLITKLDQL--EKSYDACALYGAA 466 (479)
Q Consensus 445 ~l~~~~~~~--g~~~~A~~~~~~~ 466 (479)
.|+.++... ..+.+|+.-|+.+
T Consensus 240 ~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 240 DLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHhCCHHHHHHHHHHHccc
Confidence 777777543 4466666555544
No 184
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.56 E-value=0.0015 Score=53.05 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=60.8
Q ss_pred CHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCC
Q 011714 294 DKISYSTLLNGLLKW-----GKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVT 368 (479)
Q Consensus 294 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 368 (479)
+..+|..+++.+.+. |..+=....++.|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK------g~fv-p~n~fQ~~F------ 112 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK------GKFV-PRNFFQAEF------ 112 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC------CCcc-cccHHHHHh------
Confidence 556666666665533 4444455555566666666666666666655521 1111 001111100
Q ss_pred ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCC
Q 011714 369 DPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGK 420 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 420 (479)
. -.-.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 113 ---------~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ---------M--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---------c--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0 1123467789999999999999999999999999866554
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.55 E-value=0.0074 Score=44.99 Aligned_cols=92 Identities=24% Similarity=0.203 Sum_probs=54.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC--CCHHHHHHHHHHHH
Q 011714 91 LLMALVMLNEQETAVKFFSEASSYGLAPN--SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYH--PNVTTFTILVNSLC 166 (479)
Q Consensus 91 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~ 166 (479)
+..++-..|+.++|+.+|++....|+... ...+-.+...+...|+.++|..++++....... .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44455566777777777777777664443 334555666677777777777777776654211 02222222334555
Q ss_pred hcCChHHHHHHHHHHh
Q 011714 167 KSGRLKEALEVLDQMG 182 (479)
Q Consensus 167 ~~g~~~~a~~~~~~~~ 182 (479)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6677777777665544
No 186
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.012 Score=49.08 Aligned_cols=132 Identities=9% Similarity=0.047 Sum_probs=65.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH-----H
Q 011714 122 TFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNC-----L 196 (479)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 196 (479)
..+.++.++.-.|.+.-...++.++++...+.++.....|++.-.+.|+.+.|...|++..+..-..|..+.+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 33444455555555555555566555554444555555566655566666666666655443222222222222 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 011714 197 LKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIER 254 (479)
Q Consensus 197 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 254 (479)
...|.-.+++.+|...+.++...+. .|....|.-.-+..-.|+..+|.+.++.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2233444555555555555554321 13333333333344455666666666666554
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.48 E-value=0.00052 Score=45.18 Aligned_cols=56 Identities=23% Similarity=0.233 Sum_probs=31.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 412 IQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
...+...|++++|+..|+++++.. +-+...+..+..++...|++++|...|+++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555566666666666666554 33555555666666666666666666666554
No 188
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.011 Score=50.81 Aligned_cols=99 Identities=13% Similarity=0.131 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc---CChhhHHHHHHHHHhCCCCCCHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNK---NDFFEARKVIDCMFDNGYHPNVTTFTI 160 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (479)
|...|-.|...|...|+++.|...|.+..+.. +++...+..+..++... ....++..+++++.+.+ +-|+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 55555555555555555555555555555443 34444444444433322 12334555555555443 224444444
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhC
Q 011714 161 LVNSLCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 161 li~~~~~~g~~~~a~~~~~~~~~~ 184 (479)
|...+...|++.+|...++.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 555555555555555555555544
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.43 E-value=0.00053 Score=45.65 Aligned_cols=50 Identities=14% Similarity=0.366 Sum_probs=21.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011714 98 LNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFD 148 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (479)
.|++++|+++|+++.... +.+...+..+..+|.+.|++++|.++++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444332 22344444444444444444444444444443
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.37 E-value=0.048 Score=43.21 Aligned_cols=128 Identities=17% Similarity=0.157 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCCHHHHHH
Q 011714 82 NWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGY-HPNVTTFTI 160 (479)
Q Consensus 82 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 160 (479)
.|++..--.|..++...|+..+|...|++...--..-|....-.+.++....+++..|...++++.+... ..++...-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3455555556666666666666666666655433344555555555666666666666666666554320 012223344
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011714 161 LVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYE 211 (479)
Q Consensus 161 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 211 (479)
+.+.+...|...+|...|+..... -|+...-......+.++|+.+++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 455555566666666666655543 3343333333334445555444433
No 191
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.36 E-value=0.046 Score=45.70 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEASSYGL--APNSWTFSIMIRCYCNKNDFFEARKVIDCMFDN 149 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (479)
..+-.....+...|++.+|+..|+.+..... +--....-.++.++.+.|+++.|...++...+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344445555566666666666666654321 111334445556666666666666666666544
No 192
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.35 E-value=0.005 Score=53.31 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCch----HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC--CCCHhhHHHH
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRT----ITFNNVIQALCGEGKIDKALLLLFLMYEHAK--IPSRTSYDML 446 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l 446 (479)
|...+..+.+.|++++|+..|+.+++. .|+. ..+..+..+|...|++++|+..|+.+.+... +.....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444444445556666776666666654 2222 3455566666666777777777766665431 1123444445
Q ss_pred HHHHhccCCHhHHHHHHHHHHhC
Q 011714 447 ITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
+.++...|+.++|...|+..++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55666667777777777666653
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.32 E-value=0.00097 Score=44.35 Aligned_cols=52 Identities=21% Similarity=0.326 Sum_probs=31.9
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 011714 132 NKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 184 (479)
..|++++|.++|+.+.... +-+...+..+..+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566666666666666543 335566666666666666666666666666655
No 194
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.12 Score=46.44 Aligned_cols=258 Identities=15% Similarity=0.070 Sum_probs=154.0
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 011714 61 IKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEAR 140 (479)
Q Consensus 61 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (479)
.+..+..+|+..+....+..+. ++.-|.-=+..+...+++++|.--.+.-.+.. +..+..+...-.++...++..+|.
T Consensus 60 yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 60 YKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHHH
Confidence 4556678888888887776655 56666666677777788877766665544332 112223333444444444444444
Q ss_pred HHHHHH---------------HhCC-CCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 011714 141 KVIDCM---------------FDNG-YHPNVTTFTILV-NSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYV 203 (479)
Q Consensus 141 ~~~~~~---------------~~~~-~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 203 (479)
+.++.- .... -+|.-..|..|- .++.-.|+.++|.+.--...+.. ..+....-.-..++.-.
T Consensus 138 ~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 138 EKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYN 216 (486)
T ss_pred HHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccc
Confidence 433321 1111 123334444332 34556788888888877777654 23333333333445567
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHH-------------HHHHHHHccCCHHHHHHHHHHHHHC---CCCCCHhhHHHHH
Q 011714 204 GRVEEAYEMLMNVKNDGLKPDVYTYT-------------AVMDGFCKVGRSNEAMELLNEAIER---GVTPNVVTFNTLF 267 (479)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~ 267 (479)
++.+.+...|.+.+.. .|+...-. .-.+-..+.|++..|.+.|.+.+.. +..++...|-...
T Consensus 217 ~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra 294 (486)
T KOG0550|consen 217 DNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRA 294 (486)
T ss_pred cchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhH
Confidence 7888888888887765 33433221 1123345788899999999888764 3445666677777
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011714 268 NGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRF 324 (479)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 324 (479)
.+..+.|+.++|+.-.+...+.+.. -...|..-..++...++|++|.+-++...+.
T Consensus 295 ~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 295 LVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7778889999988888777664210 1122333344566678888888888887654
No 195
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.25 E-value=0.058 Score=45.10 Aligned_cols=182 Identities=15% Similarity=0.162 Sum_probs=87.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH--HHHHHHH
Q 011714 122 TFSIMIRCYCNKNDFFEARKVIDCMFDNGY--HPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNI--QTYNCLL 197 (479)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~ 197 (479)
.+-.....+...|++.+|.+.|+.+..... +--....-.++.++.+.|++++|...+++..+.. |+. ..+...+
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y~ 84 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHHH
Confidence 334445556678888888888888876421 2223455567777888888888888888877652 221 1222222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 011714 198 KGLCYVGRVEEAYEMLMNVKNDGLK---PDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEG 274 (479)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 274 (479)
.+.+......... ....... --...+..++.-|=...-..+|...+..+... -...--.+...|.+.|
T Consensus 85 ~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 85 LGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRG 155 (203)
T ss_dssp HHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcc
Confidence 2221111111110 0000000 00122333344444444444554444444321 0111123456677788
Q ss_pred ChhhHHHHHHHHHhCC--CCCCHhHHHHHHHHHHhcCChHHH
Q 011714 275 TPMKGVGLLKLMKKRN--CLPDKISYSTLLNGLLKWGKIRPA 314 (479)
Q Consensus 275 ~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 314 (479)
.+..|..-++.+.+.= .+........++.++.+.|..+.+
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 8888888777777651 111123456666777777776643
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.24 E-value=0.0017 Score=43.29 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHh
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKN-DFFEARKVIDCMFD 148 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 148 (479)
+..|..+...+...|++++|+..|++..+.. +.+...|..+..++...| ++++|++.++..++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455556666666666666666666655543 334555555556666665 46666666555543
No 197
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.24 E-value=0.0018 Score=42.54 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=22.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011714 94 ALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMF 147 (479)
Q Consensus 94 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (479)
.+.+.|++++|+..|+++.+.. +-+...+..+..++...|++++|...|+.+.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444332 2233344444444444444444444444443
No 198
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.16 E-value=0.075 Score=41.72 Aligned_cols=70 Identities=24% Similarity=0.382 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 011714 157 TFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKN-----DGLKPDVYT 227 (479)
Q Consensus 157 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 227 (479)
+...++..+...|++++|.++.+.+.... +-+...|..+|.+|...|+...|.+.|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445555666666666666666666554 44566666666666666666666666666532 255665544
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.15 E-value=0.086 Score=41.82 Aligned_cols=127 Identities=16% Similarity=0.054 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 011714 152 HPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLK-PDVYTYTA 230 (479)
Q Consensus 152 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 230 (479)
-|+...--.|.....+.|+..+|...|++....-..-|......+.++....+++..|...++++.+.... -+..+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34555555566666666666666666666554333445555566666666666666666666666554210 01223334
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHH
Q 011714 231 VMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGV 280 (479)
Q Consensus 231 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 280 (479)
+.+.+...|++.+|+.-|+...+.- |+...-.-....+.+.|+.+++.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHH
Confidence 5556666666666666666666542 23322222233344555444443
No 200
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.11 E-value=0.0024 Score=43.11 Aligned_cols=55 Identities=22% Similarity=0.134 Sum_probs=27.1
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 011714 379 TLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (479)
.|.+.+++++|+++++.++..+.. +...+.....++...|++++|...++...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344555555555555555543211 3344444445555555555555555555544
No 201
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.09 E-value=0.22 Score=45.39 Aligned_cols=145 Identities=10% Similarity=0.099 Sum_probs=95.6
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 70 IDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDN 149 (479)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (479)
+++-+.+++ + +.|..+|..|++-+..++.+++..+++++|..-- +--..+|...+.+=...+++.....+|.+.+..
T Consensus 29 lrLRerIkd-N-PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 29 LRLRERIKD-N-PTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHHhhc-C-chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 455566654 3 4489999999999999999999999999998532 445668888888888889999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCC------hHHHHHHHHHHh-hCCCCC-CHHHHHHHHHHH---HhcCCH------HHHHHH
Q 011714 150 GYHPNVTTFTILVNSLCKSGR------LKEALEVLDQMG-RIGCKP-NIQTYNCLLKGL---CYVGRV------EEAYEM 212 (479)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~g~------~~~a~~~~~~~~-~~~~~~-~~~~~~~l~~~~---~~~~~~------~~a~~~ 212 (479)
. .+...|...++---+.+. -....+.|+-.. -.++.| +...|+..+..+ -..|.+ +...+.
T Consensus 106 ~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 S--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred h--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 4 467777777764444331 111223333322 234444 344566555443 233444 455666
Q ss_pred HHHHHHC
Q 011714 213 LMNVKND 219 (479)
Q Consensus 213 ~~~~~~~ 219 (479)
|.++...
T Consensus 184 Y~ral~t 190 (660)
T COG5107 184 YMRALQT 190 (660)
T ss_pred HHHHHcC
Confidence 6666653
No 202
>PRK15331 chaperone protein SicA; Provisional
Probab=97.06 E-value=0.042 Score=42.97 Aligned_cols=86 Identities=15% Similarity=-0.065 Sum_probs=66.3
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALL 426 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 426 (479)
..|++++|..+|+-+...++. +..-|..|..++-..+++++|+..|......+. -|+..+-....++...|+.+.|+.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 568888888888888776555 566778888888888888888888887765543 355556667778888888888888
Q ss_pred HHHHHHhC
Q 011714 427 LLFLMYEH 434 (479)
Q Consensus 427 ~~~~~~~~ 434 (479)
.|+..++.
T Consensus 127 ~f~~a~~~ 134 (165)
T PRK15331 127 CFELVNER 134 (165)
T ss_pred HHHHHHhC
Confidence 88888774
No 203
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.05 E-value=0.01 Score=52.79 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 011714 297 SYSTLLNGLLKWGKIRPAVSIFKE 320 (479)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~ 320 (479)
.|..|-..|.-.|+++.|+...+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~ 220 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKL 220 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHH
Confidence 344444455555666666655443
No 204
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.02 E-value=0.0015 Score=44.81 Aligned_cols=63 Identities=21% Similarity=0.201 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CC-CCC-HhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 406 ITFNNVIQALCGEGKIDKALLLLFLMYEH----AK-IPS-RTSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 406 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
.+++.+..+|...|++++|+..+++..+. +. .|+ ..++..+..++...|++++|++.++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555556666666666666666655532 10 111 34455666666666666666666666554
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.01 E-value=0.021 Score=49.56 Aligned_cols=97 Identities=9% Similarity=-0.047 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCCHHHHHHHHH
Q 011714 123 FSIMIRCYCNKNDFFEARKVIDCMFDNGYHP--NVTTFTILVNSLCKSGRLKEALEVLDQMGRIG--CKPNIQTYNCLLK 198 (479)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~ 198 (479)
|...+....+.|++++|...|+.+.+..... ....+-.+..+|...|++++|...|+.+.+.. -+.....+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 4444444445566666666666666542110 02355556666666666666666666666431 1112344444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 011714 199 GLCYVGRVEEAYEMLMNVKND 219 (479)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~ 219 (479)
.+...|+.++|..+|+.+.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 566666677777776666654
No 206
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.95 E-value=0.41 Score=46.19 Aligned_cols=61 Identities=10% Similarity=0.099 Sum_probs=35.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011714 372 TYGIVIRTLGKGKKTDEALIHLHHAIEM-GHIPRTITFNNVIQALCGEGKIDKALLLLFLMY 432 (479)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 432 (479)
.|..|.+-....|..+.|++.--.+.+. .+-|...+|..+.-+-+....+...-+.|-++.
T Consensus 1023 HFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1023 HFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 3445555556677888887654444322 355677778777666555555555555554443
No 207
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.91 E-value=0.31 Score=44.24 Aligned_cols=168 Identities=15% Similarity=0.071 Sum_probs=99.9
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHhhCCCCCCHHHHH
Q 011714 121 WTFSIMIRCYCNKNDFFEARKVIDCMFDNG---YHPNVTTFTILVNSLCK---SGRLKEALEVLDQMGRIGCKPNIQTYN 194 (479)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (479)
.+...++-+|....+++...++++.+.... +.-...+--...-++.+ .|+.++|++++..+......++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 344455566777888888888888887541 11122333334445555 788888888888855544567777777
Q ss_pred HHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----HHHHHHHH---H-HHHHCC--
Q 011714 195 CLLKGLCY---------VGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR----SNEAMELL---N-EAIERG-- 255 (479)
Q Consensus 195 ~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----~~~a~~~~---~-~~~~~~-- 255 (479)
.+.+.|-. ....++|+..|.+.-+. .|+...--.++..+...|. -.+..++- . .+.+.|
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 77766532 22367788888776554 2443332222222222332 11222222 1 122233
Q ss_pred -CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 011714 256 -VTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN 290 (479)
Q Consensus 256 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (479)
...+-..+.+++.++.-.|+.++|.+..++|.+..
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 23455566788899999999999999999998763
No 208
>PRK15331 chaperone protein SicA; Provisional
Probab=96.91 E-value=0.014 Score=45.52 Aligned_cols=91 Identities=9% Similarity=-0.092 Sum_probs=75.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCH
Q 011714 377 IRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKS 456 (479)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 456 (479)
..-+...|++++|..+|+-+.-.+.. +..-|..|..+|-..+++++|+..+......+ ..|+..+-....+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 44456789999999999988876543 56667888888888999999999999887765 34666677788999999999
Q ss_pred hHHHHHHHHHHhC
Q 011714 457 YDACALYGAALKQ 469 (479)
Q Consensus 457 ~~A~~~~~~~~~~ 469 (479)
..|+..|+.++++
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998873
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.90 E-value=0.32 Score=44.16 Aligned_cols=168 Identities=14% Similarity=0.107 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011714 155 VTTFTILVNSLCKSGRLKEALEVLDQMGRIG---CKPNIQTYNCLLKGLCY---VGRVEEAYEMLMNVKNDGLKPDVYTY 228 (479)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (479)
..+...++-.|-...+++..+++.+.+...- +.-+...-....-++.+ .|+.++|++++..+......++..+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3344455566888999999999999998751 12223333345556667 89999999999997666667889999
Q ss_pred HHHHHHHHc---------cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhh----HHHHH----HHHHhCC-
Q 011714 229 TAVMDGFCK---------VGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMK----GVGLL----KLMKKRN- 290 (479)
Q Consensus 229 ~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~----~~~~~~~- 290 (479)
..+.+.|-. ....++|+..|.+.-+. .|+..+=-.++..+.-.|+..+ ..++- ..+.++|
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 988887743 22467788888776554 2444432233333333443222 22222 1122333
Q ss_pred --CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011714 291 --CLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRF 324 (479)
Q Consensus 291 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 324 (479)
-..+...+.+++.++.-.|+.++|.+..+.|.+.
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2346677888899999999999999999999876
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.83 E-value=0.0033 Score=43.12 Aligned_cols=63 Identities=24% Similarity=0.290 Sum_probs=49.9
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCC-Cc-hHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011714 371 GTYGIVIRTLGKGKKTDEALIHLHHAIEM----GHI-PR-TITFNNVIQALCGEGKIDKALLLLFLMYE 433 (479)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (479)
.+|+.+..+|...|++++|++.+++..+. |.. |+ ..++..+..++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56888999999999999999999988754 111 22 45788888999999999999999998765
No 211
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.74 E-value=0.019 Score=45.13 Aligned_cols=71 Identities=20% Similarity=0.357 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh-----hCCCCCCHHHH
Q 011714 122 TFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMG-----RIGCKPNIQTY 193 (479)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~ 193 (479)
+...++..+...|++++|..+.+.+.... |.+...|..+|.+|...|+..+|.++|+++. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 55666677777888888888888887664 5577788888888888888888888887764 34777776653
No 212
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.74 E-value=0.019 Score=51.26 Aligned_cols=265 Identities=17% Similarity=0.114 Sum_probs=162.6
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--h--CCCC-CCHHhHHHHHHHH
Q 011714 59 DRIKASPLKERIDIFDSIKKDGTN---WSVSDFNDLLMALVMLNEQETAVKFFSEAS--S--YGLA-PNSWTFSIMIRCY 130 (479)
Q Consensus 59 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~--~--~~~~-~~~~~~~~l~~~~ 130 (479)
+.++.|+...-+.+|+...+-|.. .=..+|..|..+|...+++++|+++...=. . .|-+ -...+...|...+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 456788888888999888776643 223557778888888999999998765411 1 1101 1122333444444
Q ss_pred HhcCChhhHHHHHHHHH----hCCC-CCCHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHh---
Q 011714 131 CNKNDFFEARKVIDCMF----DNGY-HPNVTTFTILVNSLCKSGR--------------------LKEALEVLDQMG--- 182 (479)
Q Consensus 131 ~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~~~--- 182 (479)
--.|.+++|......-+ +.|- ......+..|...|...|+ ++.|.++|.+=.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666655433221 1110 1123344556677765543 344555554322
Q ss_pred -hCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHH---
Q 011714 183 -RIGCK-PNIQTYNCLLKGLCYVGRVEEAYEMLMNVKN----DGLK-PDVYTYTAVMDGFCKVGRSNEAMELLNEAI--- 252 (479)
Q Consensus 183 -~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--- 252 (479)
+.|-. .--.+|..|...|.-.|+++.|+...+.-.. .|-. .....+..+.+++.-.|+++.|.+.|+...
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 22200 1123566666677778899999887665332 2322 235677888899999999999999987653
Q ss_pred -HCC-CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHh----CC-CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 253 -ERG-VTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKK----RN-CLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 253 -~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
+.| ......+...|.+.|.-..++++|+.++.+-.. .+ ..-....+..|..++...|..++|..+...-++
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 222 223455667788888888889999988765432 11 112456788889999999999998877765543
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.72 E-value=0.014 Score=39.25 Aligned_cols=54 Identities=13% Similarity=0.193 Sum_probs=25.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011714 94 ALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFD 148 (479)
Q Consensus 94 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (479)
.+.+.++++.|+++++.+...+ +.+...+.....++.+.|++++|.+.++...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444455555555555544443 33344444444444555555555555554444
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.67 E-value=0.64 Score=44.54 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=16.3
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011714 143 IDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQ 180 (479)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 180 (479)
++++.+.|-.|+... +...++-.|.+.+|-++|.+
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 344555554454433 22333444555555555543
No 215
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.65 E-value=0.053 Score=40.90 Aligned_cols=47 Identities=9% Similarity=0.168 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 011714 187 KPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND-GLKPDVYTYTAVMD 233 (479)
Q Consensus 187 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~ 233 (479)
.|+..+..+++.+|+..+++..|+++++...+. +++.+..+|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344444444444444444444444444444332 33333444444443
No 216
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.53 E-value=0.63 Score=42.65 Aligned_cols=398 Identities=16% Similarity=0.178 Sum_probs=205.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhC--CCCC------------C
Q 011714 56 RFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMA--LVMLNEQETAVKFFSEASSY--GLAP------------N 119 (479)
Q Consensus 56 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~A~~~~~~~~~~--~~~~------------~ 119 (479)
++++..-..+.+.....+..+.+... ...|-.+..+ +-+.+++..|++.+..-... +-.+ |
T Consensus 51 rilnAffl~nld~Me~~l~~l~~~~~---~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~d 127 (549)
T PF07079_consen 51 RILNAFFLNNLDLMEKQLMELRQQFG---KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSD 127 (549)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhH
Confidence 44444444555444444444433222 2223334333 34578888888887765443 2111 1
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcC--------C-------hHHHHHHHHH
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDN----GYHPNVTTFTILVNSLCKSG--------R-------LKEALEVLDQ 180 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g--------~-------~~~a~~~~~~ 180 (479)
-..=+..+.+++..|++.+++.+++++... ....+..+|+.++-++.+.= . ++.+.-+.++
T Consensus 128 f~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kk 207 (549)
T PF07079_consen 128 FFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKK 207 (549)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHH
Confidence 222255667888899999999988888643 33468888887665554421 1 2222223333
Q ss_pred HhhC------CCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHH
Q 011714 181 MGRI------GCKPNIQTYNCLLKGLCYVG--RVEEAYEMLMNVKNDGLKPDVYT-YTAVMDGFCKVGRSNEAMELLNEA 251 (479)
Q Consensus 181 ~~~~------~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~ 251 (479)
|... .+-|.......++....-.. +..--.++++.....-+.|+... ...++..+.+ +.+++..+-+.+
T Consensus 208 i~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~i 285 (549)
T PF07079_consen 208 IHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAI 285 (549)
T ss_pred HHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHH
Confidence 3221 12333333344443332221 22223333333333344555332 2333333333 555555555444
Q ss_pred HHCCCC----CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHH-------HHHHHHHh----cCChHHHHH
Q 011714 252 IERGVT----PNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYS-------TLLNGLLK----WGKIRPAVS 316 (479)
Q Consensus 252 ~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~----~~~~~~a~~ 316 (479)
....+. --..++..++....+.++...|-+.+.-+.... |+...-. .+-+..+. .-+...-..
T Consensus 286 a~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~ 363 (549)
T PF07079_consen 286 ASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLN 363 (549)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHH
Confidence 332111 124567888888889999998888887776543 2221111 11111110 111222334
Q ss_pred HHHHHHHcCCCcCH-HHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHH----HHh---cCCCHHH
Q 011714 317 IFKEMVRFGFEVDE-RMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIR----TLG---KGKKTDE 388 (479)
Q Consensus 317 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~---~~g~~~~ 388 (479)
+|.++...++ |. .....++.. ++..+...+.-+.|.++++.+.+-... |...-|.+.. +|. ....+.+
T Consensus 364 lwe~~qs~Di--DrqQLvh~L~~~-Ak~lW~~g~~dekalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~r 439 (549)
T PF07079_consen 364 LWEEIQSYDI--DRQQLVHYLVFG-AKHLWEIGQCDEKALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPR 439 (549)
T ss_pred HHHHHHhhcc--cHHHHHHHHHHH-HHHHHhcCCccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 4555444322 32 222222222 122223334478888888887764332 4433333221 221 1233444
Q ss_pred HHHHHHHHHHcCCCCc----hHHHHHHHHH--HHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHH
Q 011714 389 ALIHLHHAIEMGHIPR----TITFNNVIQA--LCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACAL 462 (479)
Q Consensus 389 A~~~~~~~~~~~~~p~----~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 462 (479)
-+++-+-+.+.|+.|- ...-|.|..| +...|++.++.-+-.-+.+ +.|++.+|..++-++....++++|.++
T Consensus 440 LlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 440 LLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEY 517 (549)
T ss_pred HHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4444444556676653 3344555443 4567899988877766665 367899999999888899999999988
Q ss_pred HHHH
Q 011714 463 YGAA 466 (479)
Q Consensus 463 ~~~~ 466 (479)
+..+
T Consensus 518 l~~L 521 (549)
T PF07079_consen 518 LQKL 521 (549)
T ss_pred HHhC
Confidence 8754
No 217
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.47 Score=41.00 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=29.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011714 94 ALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMF 147 (479)
Q Consensus 94 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (479)
.....|++.+|..+|....... +-+...--.++.+|...|+.+.|..++..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3344556666666666555443 3334455555556666666666666665554
No 218
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.51 E-value=0.058 Score=39.92 Aligned_cols=88 Identities=18% Similarity=0.085 Sum_probs=42.5
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchH---HHHHHHHHHHcCCCHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTI---TFNNVIQALCGEGKIDK 423 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~ 423 (479)
+.|+++.|++.|.+....-+. ....||.-..++.-.|+.++|++-+.++++..-.-+.. .|..-...|...|+-+.
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~ 133 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDA 133 (175)
T ss_pred hccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHH
Confidence 445555555555555544333 44455555555555555555555555555431111111 12222223444555555
Q ss_pred HHHHHHHHHhCC
Q 011714 424 ALLLLFLMYEHA 435 (479)
Q Consensus 424 a~~~~~~~~~~~ 435 (479)
|..=|+...+.|
T Consensus 134 AR~DFe~AA~LG 145 (175)
T KOG4555|consen 134 ARADFEAAAQLG 145 (175)
T ss_pred HHHhHHHHHHhC
Confidence 555555555554
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.41 E-value=0.81 Score=43.89 Aligned_cols=89 Identities=12% Similarity=0.080 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHh-------
Q 011714 224 DVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKI------- 296 (479)
Q Consensus 224 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------- 296 (479)
+..+...+...+.+...+.-|-++|..|-+. ..+++.....+++++|..+-+...+. .|++.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHh
Confidence 4455555555566667777777777776432 34566777788888888777665442 22321
Q ss_pred ----HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 297 ----SYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 297 ----~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
-|...-.+|.+.|+-.+|..+++++..
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122333466677777777777776654
No 220
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.41 E-value=0.67 Score=41.60 Aligned_cols=109 Identities=18% Similarity=0.166 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHH
Q 011714 296 ISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGI 375 (479)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 375 (479)
.+.+..+.-+...|+...|..+-++.. .|+...+...+.+++ ..+++++-..+-.. ++ ++..|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa-----~~~~w~eL~~fa~s--kK----sPIGyep 242 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALA-----ENKDWDELEKFAKS--KK----SPIGYEP 242 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHH-----hcCCHHHHHHHHhC--CC----CCCChHH
Confidence 345555667778888888888766653 467788888888887 66888877665432 22 3467889
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHH
Q 011714 376 VIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLF 429 (479)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (479)
.+.+|.+.|+..+|..+..+ +. +..-+..|.+.|++.+|.+...
T Consensus 243 Fv~~~~~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 243 FVEACLKYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999998888876 22 2445667788899888877643
No 221
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.043 Score=49.16 Aligned_cols=122 Identities=14% Similarity=0.044 Sum_probs=90.5
Q ss_pred hhccHHHHHHHHHHHHhC----CCCCC----------hhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKK----VSVTD----------PGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVI 412 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~----~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 412 (479)
+.|++..|..-|++.... ...++ ..+++.+..++.+.+++.+|++...+.++.+ ++|....-.=.
T Consensus 220 K~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG 298 (397)
T KOG0543|consen 220 KEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRG 298 (397)
T ss_pred hhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHH
Confidence 679999999999986642 11111 2356778888999999999999999988864 34666677777
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHh-HHHHHHHHHHhCC
Q 011714 413 QALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSY-DACALYGAALKQG 470 (479)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~ 470 (479)
.+|...|+++.|+..|+++++.. +.|..+-..|+..-.+..... ...++|..|...-
T Consensus 299 ~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 299 QALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 89999999999999999999875 445566666666555554444 4478899888763
No 222
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.7 Score=39.97 Aligned_cols=147 Identities=19% Similarity=0.203 Sum_probs=89.9
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 011714 128 RCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVE 207 (479)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 207 (479)
......|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+...--.........-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34566788888888888887654 33456667788888888888888888888765321122222223344455555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHhcCChhh
Q 011714 208 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIER--GVTPNVVTFNTLFNGYCKEGTPMK 278 (479)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~ 278 (479)
+...+-.+.-.. +-|...-..+...+...|+.++|.+.+-.+++. |.. |...-..++..+.-.|.-+.
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCH
Confidence 555554444432 225666667777777888888887777666553 322 44455666666665554333
No 223
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.21 E-value=0.34 Score=36.16 Aligned_cols=136 Identities=15% Similarity=0.171 Sum_probs=70.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHhc
Q 011714 306 LKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDP---GTYGIVIRTLGK 382 (479)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~ 382 (479)
.-.|..++..++..+...+. +..-++.++.... ..-+-+...++++.+.+. -|. ...-.++.+|+.
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNii-----Daa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~ 81 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNII-----DAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAK 81 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHH-----HH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHH
T ss_pred HHhchHHHHHHHHHHHcCcC---Cccccceeeeecc-----hhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHH
Confidence 44577777778777776532 3344444444443 223334444444444332 121 112233333333
Q ss_pred CCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHH
Q 011714 383 GKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACAL 462 (479)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 462 (479)
.|. +.......+.+....|+-++-.+++..+.+.+ .+++...-.+..+|.+.|...++.++
T Consensus 82 ~n~------------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~el 142 (161)
T PF09205_consen 82 RNK------------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANEL 142 (161)
T ss_dssp TT---------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred hcc------------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHH
Confidence 322 33344555666677777777777777776543 56777777778888888888888888
Q ss_pred HHHHHhCCC
Q 011714 463 YGAALKQGV 471 (479)
Q Consensus 463 ~~~~~~~~~ 471 (479)
+.++-++|+
T Consensus 143 l~~ACekG~ 151 (161)
T PF09205_consen 143 LKEACEKGL 151 (161)
T ss_dssp HHHHHHTT-
T ss_pred HHHHHHhch
Confidence 888877775
No 224
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.20 E-value=0.14 Score=38.64 Aligned_cols=53 Identities=15% Similarity=0.083 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHh
Q 011714 220 GLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIE-RGVTPNVVTFNTLFNGYCK 272 (479)
Q Consensus 220 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 272 (479)
...|+..+..+++.+|+..|++..|.++++...+ .+++.+...|..|+.-...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3557777777777777777777777777777654 3556566677777765443
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.18 E-value=0.2 Score=46.20 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNS----WTFSIMIRCYCNKNDFFEARKVIDCMFDN 149 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (479)
.+...++.+..+|...|++++|+..|++..+. .|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46788899999999999999999999998876 4542 35899999999999999999999998874
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.17 E-value=0.034 Score=51.02 Aligned_cols=98 Identities=16% Similarity=0.071 Sum_probs=74.7
Q ss_pred ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCch----HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 011714 369 DPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRT----ITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYD 444 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 444 (479)
+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..++++++.+ .+ .|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHH
Confidence 5578999999999999999999999999885 4553 358999999999999999999999999863 22 232
Q ss_pred HHHH--HHhccCCHhHHHHHHHHHHhCCCC
Q 011714 445 MLIT--KLDQLEKSYDACALYGAALKQGVI 472 (479)
Q Consensus 445 ~l~~--~~~~~g~~~~A~~~~~~~~~~~~~ 472 (479)
.+.. .+....+.++..++++.+.+-|..
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 2221 222334556778888888877754
No 227
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.17 E-value=0.09 Score=44.74 Aligned_cols=97 Identities=15% Similarity=0.141 Sum_probs=68.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC--CCCHhhHHHHH
Q 011714 372 TYGIVIRTLGKGKKTDEALIHLHHAIEMGHI--PRTITFNNVIQALCGEGKIDKALLLLFLMYEHAK--IPSRTSYDMLI 447 (479)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 447 (479)
.|+.-+..+ +.|++.+|...|...++.... -....+-.|..++...|++++|..+|..+.+... +--+..+-.|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 466655544 456688888888888765221 1233456677888888888888888888877542 22346677777
Q ss_pred HHHhccCCHhHHHHHHHHHHhC
Q 011714 448 TKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
.+..+.|+.++|+..|+..++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7888888888888888888774
No 228
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.12 E-value=0.97 Score=40.62 Aligned_cols=96 Identities=15% Similarity=0.084 Sum_probs=73.7
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALL 426 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 426 (479)
..|....|.++-.+. -.|+..-|-..+.+++..++|++-.++... .-++.-|...+.+|.+.|+..+|..
T Consensus 189 ~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~ 258 (319)
T PF04840_consen 189 EMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASK 258 (319)
T ss_pred HCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHH
Confidence 347777777765554 346888899999999999999988876542 2245779999999999999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHH
Q 011714 427 LLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACAL 462 (479)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 462 (479)
++.++ + +..-+..|.+.|++.+|.+.
T Consensus 259 yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 259 YIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 98762 1 24556778888988888655
No 229
>PRK11906 transcriptional regulator; Provisional
Probab=96.11 E-value=0.56 Score=43.46 Aligned_cols=152 Identities=13% Similarity=0.055 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHH-HcCCCcCHHHHHHHHHHHhcc-----cchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC
Q 011714 311 IRPAVSIFKEMV-RFGFEVDERMMNSLLRGLCMK-----SWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGK 384 (479)
Q Consensus 311 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 384 (479)
.+.|..+|.+.. .....|+-......+..+... .........+|.+.-++..+.+.. |+.....+..++...+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 455677777776 222444433322222221110 012345667788888888887766 8888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHhccCCHhHHHHH
Q 011714 385 KTDEALIHLHHAIEMGHIPR-TITFNNVIQALCGEGKIDKALLLLFLMYEHAK-IPSRTSYDMLITKLDQLEKSYDACAL 462 (479)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 462 (479)
+++.|..+|+++... .|| ..+|......+.-.|+.++|.+.+++..+... ..........++.|+..+ .++|+.+
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 899999999998875 444 55666666777778999999999999877653 112233444455666654 6777777
Q ss_pred HHHH
Q 011714 463 YGAA 466 (479)
Q Consensus 463 ~~~~ 466 (479)
|-+-
T Consensus 430 ~~~~ 433 (458)
T PRK11906 430 YYKE 433 (458)
T ss_pred Hhhc
Confidence 6543
No 230
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.07 E-value=1.6 Score=42.73 Aligned_cols=97 Identities=14% Similarity=0.070 Sum_probs=70.4
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALL 426 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 426 (479)
..|+..+|.++-.+.+ .||-..|-.-+.+++..+++++-+++-+... .+.-|...+.+|.+.|+.++|.+
T Consensus 696 ~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~K 765 (829)
T KOG2280|consen 696 LIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKK 765 (829)
T ss_pred HccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhh
Confidence 3477777777665554 3577778888889999999998887766432 25568888899999999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHH
Q 011714 427 LLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACAL 462 (479)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 462 (479)
++-+.... . ..+.+|.+.|++.+|.++
T Consensus 766 Yiprv~~l-----~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 766 YIPRVGGL-----Q----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hhhccCCh-----H----HHHHHHHHhccHHHHHHH
Confidence 87654321 1 556778888888887654
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.01 E-value=0.4 Score=45.84 Aligned_cols=167 Identities=16% Similarity=0.107 Sum_probs=105.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHH-------HHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCCh
Q 011714 298 YSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDER-------MMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDP 370 (479)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 370 (479)
+..+++...=.||-+.+.+.+.+..+.+ ..... .|..++..++... ......+.|.+++..+...-+ +.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~-~i~~~la~L~LL~y~~~~~~~~~~~-~~~~~~~~a~~lL~~~~~~yP--~s 266 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSE-NIRSPLAALVLLWYHLVVPSFLGID-GEDVPLEEAEELLEEMLKRYP--NS 266 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHcCCc-ccCCCHHHHHHHHHHHHHhCC--Cc
Confidence 3444445555677777777766655422 11111 1222222222110 035678899999999988654 44
Q ss_pred hhHH-HHHHHHhcCCCHHHHHHHHHHHHHcCC---CCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 011714 371 GTYG-IVIRTLGKGKKTDEALIHLHHAIEMGH---IPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDML 446 (479)
Q Consensus 371 ~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 446 (479)
..|. .-.+.+...|+.++|++.++++..... ......+.-+..++.-.++|++|...|..+.+.. .-+...|..+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence 4333 345777889999999999997664211 1233456667778888999999999999999875 3355566555
Q ss_pred HH-HHhccCCH-------hHHHHHHHHHHhC
Q 011714 447 IT-KLDQLEKS-------YDACALYGAALKQ 469 (479)
Q Consensus 447 ~~-~~~~~g~~-------~~A~~~~~~~~~~ 469 (479)
.. ++...|+. ++|.+++.++-..
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 44 45567888 8888888877553
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.97 E-value=0.9 Score=43.52 Aligned_cols=177 Identities=16% Similarity=0.070 Sum_probs=108.2
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH------HHHHHHHHHHh----cCChHHH
Q 011714 105 VKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVT------TFTILVNSLCK----SGRLKEA 174 (479)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~----~g~~~~a 174 (479)
.-+|.-+... +||. +..++....-.||-+.+++.+....+.+--..+. .|...+..++. ....+.|
T Consensus 177 ~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3445555433 2333 4556666666788888888877766532111111 23333333333 4567888
Q ss_pred HHHHHHHhhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 011714 175 LEVLDQMGRIGCKPNIQTYNC-LLKGLCYVGRVEEAYEMLMNVKNDG--L-KPDVYTYTAVMDGFCKVGRSNEAMELLNE 250 (479)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 250 (479)
.++++.+.+. -|+...|.. -.+.+...|++++|++.|+...... . ......+--+.-++.-.++|++|.+.|..
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 9999988876 466655543 3456677889999999998755321 1 11233444556677888899999999999
Q ss_pred HHHCCCCCCHhhHHHHH-HHHHhcCCh-------hhHHHHHHHHHh
Q 011714 251 AIERGVTPNVVTFNTLF-NGYCKEGTP-------MKGVGLLKLMKK 288 (479)
Q Consensus 251 ~~~~~~~~~~~~~~~l~-~~~~~~g~~-------~~a~~~~~~~~~ 288 (479)
+.+..-- +...|.-+. .++...|+. ++|.+++.+...
T Consensus 331 L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 331 LLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 8875322 333443333 344566766 888888887744
No 233
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.81 Score=38.31 Aligned_cols=90 Identities=14% Similarity=-0.006 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc----CCCCc-hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC---CCCCHhhHH
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIEM----GHIPR-TITFNNVIQALCGEGKIDKALLLLFLMYEHA---KIPSRTSYD 444 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~ 444 (479)
+....+.+.+..++++|-..+.+-... .-.++ ...|...|-.+....++..|.+.++.-...+ .+.+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 444455566666666665544432111 11122 1234555556666677777777776643322 133556667
Q ss_pred HHHHHHhccCCHhHHHHHH
Q 011714 445 MLITKLDQLEKSYDACALY 463 (479)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~ 463 (479)
.|+.+| ..|+.+++..++
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 777766 455666655543
No 234
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.75 E-value=1.1 Score=38.08 Aligned_cols=85 Identities=15% Similarity=0.172 Sum_probs=60.2
Q ss_pred CCCcchHHHHHHHHHHhcCChhhHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHh
Q 011714 46 KENPRSLQAQRFVDRIKASPLKERIDIFDSIKKDGT--NWSVSDFNDLLMALVMLNEQETAVKFFSEASSYG-LAPNSWT 122 (479)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 122 (479)
...|...-....+..+..|++.+|...|+.+....+ +....+.-.++.++-+.++++.|+..+++..+.- -.|| .-
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~d 108 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-AD 108 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hh
Confidence 455677777888888999999999999998886543 2345666677778888899999998888876543 2333 34
Q ss_pred HHHHHHHHH
Q 011714 123 FSIMIRCYC 131 (479)
Q Consensus 123 ~~~l~~~~~ 131 (479)
|...|.+++
T Consensus 109 Y~~YlkgLs 117 (254)
T COG4105 109 YAYYLKGLS 117 (254)
T ss_pred HHHHHHHHH
Confidence 544455444
No 235
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.69 E-value=0.51 Score=44.48 Aligned_cols=164 Identities=14% Similarity=0.141 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHH--HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 011714 51 SLQAQRFVDRIKASPLKERIDIFD--SIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIR 128 (479)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 128 (479)
....-.+-..+-.++.+++..+.+ .+. . ..+....+.++..+-+.|-.+.|+++-. |.. .-..
T Consensus 262 d~~~~~fk~av~~~d~~~v~~~i~~~~ll-~--~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFe 326 (443)
T PF04053_consen 262 DLSELEFKTAVLRGDFEEVLRMIAASNLL-P--NIPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFE 326 (443)
T ss_dssp -HHHHHHHHHHHTT-HHH-----HHHHTG-G--G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHH
T ss_pred CHHHHHHHHHHHcCChhhhhhhhhhhhhc-c--cCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhH
Confidence 344455556667777777666554 211 1 1124557888888888888888887743 221 2345
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011714 129 CYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEE 208 (479)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 208 (479)
...+.|+++.|.++.++. .+...|..|.....++|+++-|.+.|.+... |..|+-.|.-.|+.+.
T Consensus 327 LAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREK 391 (443)
T ss_dssp HHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHH
T ss_pred HHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHH
Confidence 566778888888765432 3677888888888888888888888877652 4566667778888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 011714 209 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNE 250 (479)
Q Consensus 209 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 250 (479)
..++.+.....|- ++....++...|+.++..+++.+
T Consensus 392 L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 392 LSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777766542 44555566667777777777654
No 236
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.69 E-value=0.73 Score=35.74 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 011714 90 DLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNK 133 (479)
Q Consensus 90 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (479)
.++..+...+.......+++.+...+ ..+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34444444455555555555555444 24444555555555543
No 237
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.67 E-value=0.44 Score=42.25 Aligned_cols=122 Identities=16% Similarity=0.095 Sum_probs=75.8
Q ss_pred hhccHHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCCCch-----HHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKV-----SVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEM----GHIPRT-----ITFNNVI 412 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-----~~~~~l~ 412 (479)
..+.++++++.|+...+.. ......++..+...|.+..++++|+.+..++.+. ++..=. .....+.
T Consensus 134 gls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhma 213 (518)
T KOG1941|consen 134 GLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMA 213 (518)
T ss_pred hHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHH
Confidence 4466777777777654311 1112256788888888889999888877766543 221101 1223344
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCC-CCCHh----hHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 413 QALCGEGKIDKALLLLFLMYEHAK-IPSRT----SYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
-++...|...+|.+..++..+..+ .-|.. ....+.+.|...|+.+.|..-|+.+..
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 566778888888877777654321 11333 345567788888999998888887643
No 238
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.66 E-value=1.7 Score=39.90 Aligned_cols=132 Identities=14% Similarity=0.092 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHH
Q 011714 296 ISYSTLLNGLLKWGKIRPAVSIFKEMVRFG-FEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYG 374 (479)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 374 (479)
..|...+....+..-.+.|..+|.+..+.+ +.++..++++++..++ .|+...|..+|+.-...-+. +...-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~------~~d~~ta~~ifelGl~~f~d-~~~y~~ 470 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA------TGDRATAYNIFELGLLKFPD-STLYKE 470 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh------cCCcchHHHHHHHHHHhCCC-chHHHH
Confidence 345556666666777788888888888877 5677788888888774 47888888888865544222 233345
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 375 IVIRTLGKGKKTDEALIHLHHAIEMGHIPR--TITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
-.+..+...++-+.|..+|+..++. +..+ ..+|..+|.--..-|+...+..+-++|.+.-
T Consensus 471 kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 5666777788888888888866543 2223 4578888888888888888888877777653
No 239
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=1.2 Score=44.22 Aligned_cols=175 Identities=18% Similarity=0.175 Sum_probs=87.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011714 159 TILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCL----LKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDG 234 (479)
Q Consensus 159 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 234 (479)
..-++.+.+...++-|+.+-+.-. .+..+...+ ..-+.+.|++++|...|-+.... +.|. .+|.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 334555556666666665544321 222222222 33345566777766666555432 1221 23444
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHH
Q 011714 235 FCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPA 314 (479)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 314 (479)
|....+..+-..+++.+.+.|.. +...-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..|.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 44555555566666666666654 44455666667777776666665555443 2211 11234445555555555555
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHH
Q 011714 315 VSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKM 361 (479)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 361 (479)
..+-..... +...+..++. ..+++++|.+.+..+
T Consensus 483 ~~LA~k~~~-----he~vl~ille--------~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDILLE--------DLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHHHHH--------HhcCHHHHHHHHhcC
Confidence 544433321 2333444443 236666666666554
No 240
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.62 E-value=0.54 Score=36.01 Aligned_cols=63 Identities=13% Similarity=0.012 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 011714 88 FNDLLMALVMLNEQETAVKFFSEASSYG--LAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNG 150 (479)
Q Consensus 88 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (479)
+..-.....+.|++++|++.|+.+..+- -+-...+.-.++.+|.+.+++++|...++..++..
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3333444445566666666666555431 01123344455555666666666666666665543
No 241
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.34 Score=43.66 Aligned_cols=138 Identities=15% Similarity=0.093 Sum_probs=70.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 011714 92 LMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRL 171 (479)
Q Consensus 92 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 171 (479)
...+.+.|++..|...|+++...= . |.+.-+.++..... ..-..+++.|.-++.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l--~-----------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFL--E-----------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHh--h-----------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhhH
Confidence 345677888888888888765420 0 00001111111111 11223445555666666666
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHH-HHHHHHH
Q 011714 172 KEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPD-VYTYTAVMDGFCKVGRSN-EAMELLN 249 (479)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~-~a~~~~~ 249 (479)
.+|++.-++.+..+ ++|.....--..++...|+++.|...|+++.+. .|+ ...-+.++.+--+..+.. ...++|.
T Consensus 274 ~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 274 KEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666554 455666656666666666666666666666654 232 333333333333333332 2345555
Q ss_pred HHHH
Q 011714 250 EAIE 253 (479)
Q Consensus 250 ~~~~ 253 (479)
.|..
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 5543
No 242
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.51 E-value=0.83 Score=43.13 Aligned_cols=160 Identities=18% Similarity=0.133 Sum_probs=98.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 011714 92 LMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRL 171 (479)
Q Consensus 92 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 171 (479)
.....-.++++.+.++...-.-.. .-.....+.++..+-+.|-.+.|+++..+- . .-.....+.|++
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGNL 334 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-H
T ss_pred HHHHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCCH
Confidence 344556788888777665211100 112455778888888888888888865432 2 233455678888
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 011714 172 KEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEA 251 (479)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 251 (479)
+.|.++.++. .+...|..|.....+.|+++-|.+.|.+... +..|+-.|.-.|+.+...++.+..
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 8888776543 3677888888888889999888888876642 455666777788887777777666
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHH
Q 011714 252 IERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKL 285 (479)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 285 (479)
...|- ++....++.-.|+.++.++++.+
T Consensus 400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 400 EERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 65541 45556666677888887777654
No 243
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.49 E-value=0.95 Score=35.71 Aligned_cols=134 Identities=12% Similarity=0.085 Sum_probs=82.9
Q ss_pred chHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-hHH--H
Q 011714 50 RSLQAQRFVDRIKASPLKERIDIFDSIKKDGTNWS-VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSW-TFS--I 125 (479)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~--~ 125 (479)
.+..+..-++....+..++|+.-|..+.+.|..-- +-..-.......+.|+...|+..|+++-.....|-.. -.. .
T Consensus 58 sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 58 SGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred chHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 34555666666677888888888888887775421 1222334455667888888888888877553333221 111 1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 011714 126 MIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGR 183 (479)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 183 (479)
-...+...|.++......+-+-..+-+.-...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 1223456677777777666665554444445556666666777777777777777665
No 244
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.45 E-value=1 Score=35.80 Aligned_cols=131 Identities=11% Similarity=0.162 Sum_probs=76.5
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHH
Q 011714 280 VGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFE 359 (479)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~ 359 (479)
.++++.+.+.+++|+...+..+++.+.+.|++.... .++..++-+|.......+-.+... ...-..-|.+++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~---~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQ---YPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHcc---ChHHHHHHHHHHH
Confidence 455666677788888888999999998888865444 344455555555554444333211 1122444555555
Q ss_pred HHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHH
Q 011714 360 KMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLF 429 (479)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (479)
++.. .+..++..+...|++-+|+++.+..... +......++.+..+.+|...=..+++
T Consensus 87 RL~~--------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 87 RLGT--------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred Hhhh--------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 5542 2667778888888888888888764222 11122344555555555444333333
No 245
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.45 E-value=1.9 Score=38.91 Aligned_cols=281 Identities=14% Similarity=0.102 Sum_probs=147.4
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHhcCCHHH
Q 011714 133 KNDFFEARKVIDCMFDNGYHPNVTTFTILVNSL--CKSGRLKEALEVLDQMGRIGCKPNIQ--TYNCLLKGLCYVGRVEE 208 (479)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 208 (479)
.|+-..|.++-.+..+. +.-|....-.|+.+- .-.|+.+.|.+-|+.|... |... -...|.-.--+.|..+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 35555555555443321 122333333333322 2356777777777777642 2211 12222233345566666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHhh--HHHHHHHHH---hcCChhhHHHH
Q 011714 209 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERG-VTPNVVT--FNTLFNGYC---KEGTPMKGVGL 282 (479)
Q Consensus 209 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~---~~g~~~~a~~~ 282 (479)
|.++-+..-..-.. -...+...+...|..|+|+.|+++++.-.... +.++..- -..|+.+-. -..+...|...
T Consensus 173 Ar~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 66666665543211 24455666777777777777777776554421 2222211 112222111 11234444444
Q ss_pred HHHHHhCCCCCCHh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHH
Q 011714 283 LKLMKKRNCLPDKI-SYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKM 361 (479)
Q Consensus 283 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 361 (479)
-.+..+ +.|+.. .-..-..++.+.|+..++-.+++.+-+....|+. ....+.+ +.|+ .+.+-+++.
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~lY~~a-------r~gd--ta~dRlkRa 318 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--ALLYVRA-------RSGD--TALDRLKRA 318 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HHHHHHh-------cCCC--cHHHHHHHH
Confidence 433333 334432 2233456778888888888888888876555543 2222222 2233 222222222
Q ss_pred H---hCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH-cCCCHHHHHHHHHHHHhC
Q 011714 362 T---KKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALC-GEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 362 ~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~ 434 (479)
. ...+. +.++...+..+-...|++..|..--+.... ..|....|..|...-. ..|+-.++...+-+..+.
T Consensus 319 ~~L~slk~n-naes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 319 KKLESLKPN-NAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHhcCcc-chHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 2 22111 456666777777788888888776666554 4677777777776544 458888888888887764
No 246
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.35 E-value=0.67 Score=40.67 Aligned_cols=116 Identities=10% Similarity=0.057 Sum_probs=59.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHH
Q 011714 98 LNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDN---GYHPNVTTFTILVNSLCKSGRLKEA 174 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a 174 (479)
.|+..+|-..++++.+. .|.|..++...=.+|...|+.......++++... ++|....+...+.-++..+|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 45555555555555543 2445555555555666666666655555555432 1111122222333334456666666
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011714 175 LEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMN 215 (479)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 215 (479)
.+.-++..+.+ +-|.-+-.++...+-..|++.++.++..+
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 66666655544 33444455555555556666666655544
No 247
>PRK11906 transcriptional regulator; Provisional
Probab=95.33 E-value=2.4 Score=39.47 Aligned_cols=162 Identities=12% Similarity=0.077 Sum_probs=99.4
Q ss_pred HHH--HHHHHHHHhcC-----CHHHHHHHHHHHHh-CCCCCC-HHhHHHHHHHHHhc---------CChhhHHHHHHHHH
Q 011714 86 SDF--NDLLMALVMLN-----EQETAVKFFSEASS-YGLAPN-SWTFSIMIRCYCNK---------NDFFEARKVIDCMF 147 (479)
Q Consensus 86 ~~~--~~ll~~~~~~~-----~~~~A~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~ 147 (479)
..| ...+++..... ..+.|+.+|.+... ..+.|+ ...|..+..++... .+..+|.++.+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 55666655522 34678889999882 223444 55565555544322 23445666677777
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHH
Q 011714 148 DNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLK-PDVY 226 (479)
Q Consensus 148 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 226 (479)
+.+ +-|......+..+..-.++.+.|...|++....+ +-...+|........-.|+.++|.+.+++..+..+. .-..
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 665 4577777777777777778888888888887764 334556666666667788888888888886654221 1123
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHH
Q 011714 227 TYTAVMDGFCKVGRSNEAMELLNE 250 (479)
Q Consensus 227 ~~~~li~~~~~~~~~~~a~~~~~~ 250 (479)
.....++.|+..+ .+.|++++-+
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHhh
Confidence 3334444555543 5666666644
No 248
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.25 E-value=2.2 Score=38.51 Aligned_cols=295 Identities=16% Similarity=0.105 Sum_probs=187.0
Q ss_pred HHHHHHHHHH--hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---
Q 011714 157 TFTILVNSLC--KSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKG--LCYVGRVEEAYEMLMNVKNDGLKPDVYTYT--- 229 (479)
Q Consensus 157 ~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--- 229 (479)
-|..|-.+++ -.|+-..|.++-.+..+. +..|....-.++.+ -.-.|+++.|.+-|+.|.. |..+-.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGL 157 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGL 157 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhH
Confidence 3444544444 357777887777665432 23344444445443 3457999999999999986 333332
Q ss_pred -HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCCCHh--HHHHHHHHH
Q 011714 230 -AVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN-CLPDKI--SYSTLLNGL 305 (479)
Q Consensus 230 -~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~ 305 (479)
.|.-.--+.|+.+.|..+-+..-..-.. -...+...+...+..|+++.|+++++.-.... +.++.. .-..|+.+-
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 2222335789999999998887665322 34577889999999999999999998776543 233332 222233221
Q ss_pred H---hcCChHHHHHHHHHHHHcCCCcCHHHHHHH-HHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 011714 306 L---KWGKIRPAVSIFKEMVRFGFEVDERMMNSL-LRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLG 381 (479)
Q Consensus 306 ~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (479)
. -..+...|...-.+..+ +.|+...-..+ ...+. +.|++.++-.+++.+-+..+.|+. + .+....
T Consensus 237 A~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf-----~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~a 305 (531)
T COG3898 237 AMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALF-----RDGNLRKGSKILETAWKAEPHPDI--A--LLYVRA 305 (531)
T ss_pred HHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHH-----hccchhhhhhHHHHHHhcCCChHH--H--HHHHHh
Confidence 1 12345566666666554 34443322222 22333 679999999999999888777653 2 222334
Q ss_pred cCCCHHHHHHHHHHHHHc-CCCC-chHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc-cCCHhH
Q 011714 382 KGKKTDEALIHLHHAIEM-GHIP-RTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQ-LEKSYD 458 (479)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 458 (479)
+.|+ .++.-+++.... ..+| +......+..+....|++..|..--+..... .|....|..|.+.-.. .|+-.+
T Consensus 306 r~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~ 381 (531)
T COG3898 306 RSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGK 381 (531)
T ss_pred cCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHH
Confidence 5554 333333333211 1344 4567777888889999999999888877765 5788888888886654 499999
Q ss_pred HHHHHHHHHhCCCCC
Q 011714 459 ACALYGAALKQGVIP 473 (479)
Q Consensus 459 A~~~~~~~~~~~~~p 473 (479)
+...+-+.++.--.|
T Consensus 382 vR~wlAqav~APrdP 396 (531)
T COG3898 382 VRQWLAQAVKAPRDP 396 (531)
T ss_pred HHHHHHHHhcCCCCC
Confidence 999988887753333
No 249
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.23 E-value=0.19 Score=42.80 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 011714 170 RLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGR 205 (479)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 205 (479)
+.+.++.++++|...|+-||..+-..++.++.+.+.
T Consensus 138 QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 138 QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 345667777777777777777777777777776664
No 250
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.23 E-value=0.06 Score=31.84 Aligned_cols=27 Identities=22% Similarity=0.101 Sum_probs=12.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 011714 408 FNNVIQALCGEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 408 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (479)
+..+..+|...|++++|+++++++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444444444444444444444
No 251
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.20 E-value=2.5 Score=38.95 Aligned_cols=256 Identities=11% Similarity=0.081 Sum_probs=138.2
Q ss_pred HHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 011714 176 EVLDQMGRIGCKPNIQ-TYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKP----DVYTYTAVMDGFCKVGRSNEAMELLNE 250 (479)
Q Consensus 176 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~ 250 (479)
++++.....-+.|+-. +...++..+.. +.+++..+.+.+....+.+ -..++..++....+.++...|.+.+.-
T Consensus 246 q~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~l 323 (549)
T PF07079_consen 246 QILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLAL 323 (549)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3333333333445432 23334443333 4555555555444332111 245677788888888888888888866
Q ss_pred HHHCCCCCCHhhH-------HHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHhHHHHHH---HHHHhcCC-hHHHH
Q 011714 251 AIERGVTPNVVTF-------NTLFNGYCK----EGTPMKGVGLLKLMKKRNCLPDKISYSTLL---NGLLKWGK-IRPAV 315 (479)
Q Consensus 251 ~~~~~~~~~~~~~-------~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~-~~~a~ 315 (479)
+... .|+...- ..+-+..+. ..+..+=+.+|+.....++.. .....-++ .-+-+.|. -++|.
T Consensus 324 L~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekal 400 (549)
T PF07079_consen 324 LKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKAL 400 (549)
T ss_pred HHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHH
Confidence 6543 3333321 112222221 112233345555555554321 12222222 23344555 78899
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHhcccch---hhccHHHHHHHHHHHHhCCCCCCh----hhHHHHHH--HHhcCCCH
Q 011714 316 SIFKEMVRFGFEVDERMMNSLLRGLCMKSWE---EKDLLEDAYQVFEKMTKKVSVTDP----GTYGIVIR--TLGKGKKT 386 (479)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~--~~~~~g~~ 386 (479)
.+++.+++- .+........+..+.+..|. ....+..-..+-+-+.+.|..|-. ..-|.+.. .+...|++
T Consensus 401 nLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey 478 (549)
T PF07079_consen 401 NLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY 478 (549)
T ss_pred HHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH
Confidence 999988864 22222222222222222111 123344444444445556665432 23344433 34578999
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 011714 387 DEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDM 445 (479)
Q Consensus 387 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 445 (479)
.++.-.-..+.+ +.|++.+|..+.-+.....++++|..++..+ +|+...++.
T Consensus 479 ~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 479 HKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 999877776666 6899999999999999999999999998754 556665554
No 252
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.17 E-value=0.67 Score=39.63 Aligned_cols=97 Identities=13% Similarity=0.037 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C-CCCHHhHHHHHH
Q 011714 53 QAQRFVDRIKASPLKERIDIFDSIKKDGTN--WSVSDFNDLLMALVMLNEQETAVKFFSEASSYG-L-APNSWTFSIMIR 128 (479)
Q Consensus 53 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~~~l~~ 128 (479)
.++.-++.++++++..|...|....+..+. -....+.-|...+...|++++|..+|..+.+.- - +.-+..+--|..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 556666666777777777777666544322 233445556777777777777777777665431 1 112345556666
Q ss_pred HHHhcCChhhHHHHHHHHHhC
Q 011714 129 CYCNKNDFFEARKVIDCMFDN 149 (479)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~ 149 (479)
+..+.|+.++|..+|+++.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 666666667777766666654
No 253
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=0.6 Score=46.13 Aligned_cols=249 Identities=12% Similarity=0.077 Sum_probs=153.5
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 011714 121 WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPN--VTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLK 198 (479)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 198 (479)
.....-+..+.+..-++-|..+-+.- +.+++ ........+-+.+.|++++|...|-+.... +.|. .++.
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 34566777788888888888776543 22222 223344445566789999999988776643 2332 3566
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhh
Q 011714 199 GLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMK 278 (479)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 278 (479)
-|....+..+...+++.+.+.|+. +...-..|+.+|.+.++.++..++.+... .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 777788888899999999999876 66667889999999999998877765543 3222 1124566777778888888
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHH
Q 011714 279 GVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVF 358 (479)
Q Consensus 279 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~ 358 (479)
|..+-.+... +......+ +-..+++++|.+++..+.-...-+....|. ..+. ....++...++
T Consensus 482 a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~~e~l~~l~kyG---k~Ll------~h~P~~t~~il 544 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPISELLRTLNKYG---KILL------EHDPEETMKIL 544 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCHHHHHHHHHHHH---HHHH------hhChHHHHHHH
Confidence 8766554433 23334444 345788999999987763211111112222 1121 24566666666
Q ss_pred HHHHhCCCCCChhhHH-----HHHHHHhcCCCHHHHHHHHHHHHHc
Q 011714 359 EKMTKKVSVTDPGTYG-----IVIRTLGKGKKTDEALIHLHHAIEM 399 (479)
Q Consensus 359 ~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~ 399 (479)
-+.......++..... .+-....-.+.+.....+++.|.+.
T Consensus 545 i~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~ 590 (933)
T KOG2114|consen 545 IELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEI 590 (933)
T ss_pred HHHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhc
Confidence 6555433322222222 2222334556788888888877654
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.02 E-value=0.66 Score=34.61 Aligned_cols=90 Identities=21% Similarity=0.199 Sum_probs=48.3
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCH
Q 011714 165 LCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPD---VYTYTAVMDGFCKVGRS 241 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~ 241 (479)
....|+.+.|++.|.+....- +.....||.-..++.-.|+.++|+.-+++..+..-.-+ ...|..-...|...|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 445566666666666555432 33455666666666666666666666655554311111 22233333445566666
Q ss_pred HHHHHHHHHHHHCC
Q 011714 242 NEAMELLNEAIERG 255 (479)
Q Consensus 242 ~~a~~~~~~~~~~~ 255 (479)
+.|..-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666665554
No 255
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.96 E-value=0.11 Score=30.66 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011714 87 DFNDLLMALVMLNEQETAVKFFSEASSY 114 (479)
Q Consensus 87 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 114 (479)
++..+...+.+.|++++|+++|+++.+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555566666666666655554
No 256
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.96 E-value=4.2 Score=40.09 Aligned_cols=282 Identities=15% Similarity=0.051 Sum_probs=159.3
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHhh-------CCCCCCHHHHHHHHHHHHhc
Q 011714 136 FFEARKVIDCMFDNGYHPNVTTFTILVNS-----LCKSGRLKEALEVLDQMGR-------IGCKPNIQTYNCLLKGLCYV 203 (479)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 203 (479)
...+.++++...+.| +...-..+..+ +....+.+.|+.+|+...+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888888776 33333333333 3345689999999998876 44 333566677777764
Q ss_pred C-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH--hcCC
Q 011714 204 G-----RVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK-VGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYC--KEGT 275 (479)
Q Consensus 204 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~ 275 (479)
. +.+.|..++......|. |+.......+..... ..+...|.++|....+.|.. ....+..++.... -..+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCC
Confidence 3 66779999999888774 355444333333333 34678999999999988754 2222222222221 2346
Q ss_pred hhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccc--hhhccHHH
Q 011714 276 PMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSW--EEKDLLED 353 (479)
Q Consensus 276 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~ 353 (479)
...|..++.+.-+.| .|...--...+..+.. +.++.+...+..+...|..........++........ ....+.+.
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhH
Confidence 788999999998887 3332222333334444 7777777777777666544322222222222110000 01234556
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhcC----CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH----cCCCHHHHH
Q 011714 354 AYQVFEKMTKKVSVTDPGTYGIVIRTLGKG----KKTDEALIHLHHAIEMGHIPRTITFNNVIQALC----GEGKIDKAL 425 (479)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~a~ 425 (479)
+...+......+ +......+...|... .+++.|...+......+ ......+...+- -.. +..|.
T Consensus 458 ~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~ 529 (552)
T KOG1550|consen 458 AFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAK 529 (552)
T ss_pred HHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHH
Confidence 666666655443 334455555554433 34777777777766554 222222322221 123 56677
Q ss_pred HHHHHHHhCC
Q 011714 426 LLLFLMYEHA 435 (479)
Q Consensus 426 ~~~~~~~~~~ 435 (479)
+++++..+.+
T Consensus 530 ~~~~~~~~~~ 539 (552)
T KOG1550|consen 530 RYYDQASEED 539 (552)
T ss_pred HHHHHHHhcC
Confidence 7776666543
No 257
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.93 E-value=1 Score=39.65 Aligned_cols=155 Identities=10% Similarity=0.038 Sum_probs=96.0
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCChH
Q 011714 236 CKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR---NCLPDKISYSTLLNGLLKWGKIR 312 (479)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~ 312 (479)
-..|+..+|-..++++++. .+.|...+...=.+|...|+.+.....++++... +++-.+..-..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4567777887788888776 4447777887788888888888888888887654 22222223333444566788888
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCC---CChhhHHHHHHHHhcCCCHHHH
Q 011714 313 PAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSV---TDPGTYGIVIRTLGKGKKTDEA 389 (479)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A 389 (479)
+|++.-++..+.+ +-|..........+- -.++..++.+...+-...=.. .-...|-...-.+...+.++.|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVle-----m~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLE-----MNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHH-----hcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 8888888877653 224444444444442 347777777766544321101 0112333445556677888888
Q ss_pred HHHHHHHH
Q 011714 390 LIHLHHAI 397 (479)
Q Consensus 390 ~~~~~~~~ 397 (479)
+++|+.-.
T Consensus 267 leIyD~ei 274 (491)
T KOG2610|consen 267 LEIYDREI 274 (491)
T ss_pred HHHHHHHH
Confidence 88887543
No 258
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.88 E-value=3.4 Score=38.75 Aligned_cols=62 Identities=15% Similarity=-0.042 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIEMGHI-PRTITFNNVIQALCGEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (479)
-..+..++.+.|+.++|++.++++.+.... -...+...|+.++...+.+.++..++.+-.+.
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 345667777888888888888888754222 23346677888888888888888888876543
No 259
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.85 E-value=2.6 Score=37.26 Aligned_cols=19 Identities=11% Similarity=0.060 Sum_probs=12.8
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 011714 304 GLLKWGKIRPAVSIFKEMV 322 (479)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~ 322 (479)
.+.+.++++.|.++|+-..
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3556777777777776543
No 260
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.81 E-value=0.065 Score=30.03 Aligned_cols=28 Identities=21% Similarity=0.088 Sum_probs=21.9
Q ss_pred hHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 442 SYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
+|..|..+|.+.|++++|+++|++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888899999999999999986643
No 261
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.77 E-value=0.31 Score=41.54 Aligned_cols=103 Identities=15% Similarity=0.117 Sum_probs=64.3
Q ss_pred CCHhHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCC
Q 011714 293 PDKISYSTLLNGLLK-----WGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSV 367 (479)
Q Consensus 293 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 367 (479)
-|..+|...+..+.. .+..+-....++.|.+.|+.-|..+|+.|+..+-+ |. ..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK------gk---------------fi 123 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK------GK---------------FI 123 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc------cc---------------cc
Confidence 356666666666543 34455566667777777888777777777776632 11 11
Q ss_pred CChhhHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCC
Q 011714 368 TDPGTYGIVIRTLGK-GKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGK 420 (479)
Q Consensus 368 ~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 420 (479)
| -|.+-..+.. -.+-+-+++++++|...|+.||..+-..|++++.+.+-
T Consensus 124 P----~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 124 P----QNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred c----HHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1 1111111111 12345678888888888888998888888888876655
No 262
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.74 E-value=1.3 Score=33.22 Aligned_cols=64 Identities=23% Similarity=0.330 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 011714 192 TYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGV 256 (479)
Q Consensus 192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 256 (479)
.....+..+...|+-+...+++.++.+. -.+++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444555566666666666666666542 244555556666666666666666666666666554
No 263
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.64 E-value=1.8 Score=34.42 Aligned_cols=134 Identities=11% Similarity=0.152 Sum_probs=62.2
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 011714 176 EVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERG 255 (479)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 255 (479)
+++..+.+.+++|+...+..++..+.+.|++.....+ .+.++-+|.......+-.+. +....+.++--+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 3444445556666666666666666666665443333 33334444333332221111 1223333333333332
Q ss_pred CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 256 VTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 256 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0112455556666666666666666554222 112223445555555555555555444443
No 264
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.64 E-value=3 Score=36.91 Aligned_cols=99 Identities=13% Similarity=0.061 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 011714 192 TYNCLLKGLCYVGRVE---EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFN 268 (479)
Q Consensus 192 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 268 (479)
++..++.+|...+..+ +|..+++.+...... ...++..-+..+.+.++.+++.+.+..|+..- .-....+...+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 4455555665555433 344444444433211 23344444555555666666666666666541 112233444444
Q ss_pred HHHh--cCChhhHHHHHHHHHhCCCC
Q 011714 269 GYCK--EGTPMKGVGLLKLMKKRNCL 292 (479)
Q Consensus 269 ~~~~--~g~~~~a~~~~~~~~~~~~~ 292 (479)
.+.. ......+...++.+....+.
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~ 189 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFK 189 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhC
Confidence 4321 12223444555544443333
No 265
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.59 E-value=3.1 Score=36.97 Aligned_cols=133 Identities=13% Similarity=0.078 Sum_probs=64.7
Q ss_pred hHHHHHHHHHhCCCCCCHhHHHHHHHHHHh--cC----ChHHHHHHHHHHHHcCC---CcCHHHHHHHHHHHhcccchhh
Q 011714 278 KGVGLLKLMKKRNCLPDKISYSTLLNGLLK--WG----KIRPAVSIFKEMVRFGF---EVDERMMNSLLRGLCMKSWEEK 348 (479)
Q Consensus 278 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 348 (479)
+.+.+++.|.+.|+.-+..+|.+....... .. ...++..+|+.|.+... .++...+..++..-. ..-.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~---~~~e 156 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTS---EDVE 156 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhccc---ccHH
Confidence 345566666666666555555443222222 11 23456677777765432 233344444443311 0112
Q ss_pred ccHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 011714 349 DLLEDAYQVFEKMTKKVSVTDP--GTYGIVIRTLGKGKK--TDEALIHLHHAIEMGHIPRTITFNNVIQ 413 (479)
Q Consensus 349 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 413 (479)
...+....+|+.+...+...+- .....++..+..... ...+.++++.+.+.|+++....|..+.-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 2235566666666665544221 222333332222222 3466777777777777766665555443
No 266
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.39 E-value=2 Score=33.96 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=62.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChh-hH--HHHHHHHhc
Q 011714 306 LKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPG-TY--GIVIRTLGK 382 (479)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~--~~l~~~~~~ 382 (479)
.+.+..++|+.-|..+.+.|...-......-..... .+.|+...|...|+++-.....|-.. -. ..-.-.+..
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~----a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLL----AQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHH----hhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc
Confidence 445555666666666665554322211111111111 24566666666666665544443221 01 111223455
Q ss_pred CCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 011714 383 GKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (479)
.|-++....-.+.+...+.+.....-..|.-+-.+.|++..|.+.|..+...
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 6666666665555443333333334455555666777777777777766653
No 267
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.36 E-value=3 Score=37.29 Aligned_cols=231 Identities=14% Similarity=0.106 Sum_probs=132.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----HHhCC-CCCCHHhHHHHH
Q 011714 55 QRFVDRIKASPLKERIDIFDSIKKD--GTNWSVSDFNDLLMALVMLNEQETAVKFFSE----ASSYG-LAPNSWTFSIMI 127 (479)
Q Consensus 55 ~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~----~~~~~-~~~~~~~~~~l~ 127 (479)
..-+....+...++|+..+...... +.--...+|..+..+.++.|.+++++..--. ..+.. -..--..|..+.
T Consensus 11 ~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnla 90 (518)
T KOG1941|consen 11 EKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLA 90 (518)
T ss_pred HHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556667777766544321 1111334566677788888888776543222 11110 011123455566
Q ss_pred HHHHhcCChhhHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC---C--CCHHHHHHHHH
Q 011714 128 RCYCNKNDFFEARKVIDCMFDN-GYHP---NVTTFTILVNSLCKSGRLKEALEVLDQMGRIGC---K--PNIQTYNCLLK 198 (479)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~ 198 (479)
+++-+.-++.+++.+-..-... |..| --.....+..++...+.++++++.|+...+... . ....++-.|..
T Consensus 91 r~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgs 170 (518)
T KOG1941|consen 91 RSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGS 170 (518)
T ss_pred HHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHH
Confidence 6666666666666665544422 1112 112344566677777889999999987654211 1 12357788888
Q ss_pred HHHhcCCHHHHHHHHHHHHH----CCCCCCHH-HH-----HHHHHHHHccCCHHHHHHHHHHHHH----CCCCC-CHhhH
Q 011714 199 GLCYVGRVEEAYEMLMNVKN----DGLKPDVY-TY-----TAVMDGFCKVGRSNEAMELLNEAIE----RGVTP-NVVTF 263 (479)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~----~~~~~~~~-~~-----~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~ 263 (479)
.|.+..++++|.-+..+..+ .++. |.. -| ..+.-++...|+..+|.+.-++..+ .|-.+ -....
T Consensus 171 lf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~ 249 (518)
T KOG1941|consen 171 LFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCL 249 (518)
T ss_pred HHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 89999999988776655433 2222 221 12 2333456677888777777777654 33221 12334
Q ss_pred HHHHHHHHhcCChhhHHHHHHHH
Q 011714 264 NTLFNGYCKEGTPMKGVGLLKLM 286 (479)
Q Consensus 264 ~~l~~~~~~~g~~~~a~~~~~~~ 286 (479)
..+.+.|...|+.+.|+.-|++.
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHH
Confidence 56778888999999888877765
No 268
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.29 E-value=0.69 Score=40.17 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 011714 155 VTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKN-----DGLKPDVYTYT 229 (479)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 229 (479)
..++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4556667777777777777777777777664 55677777777788888877777777777655 37777777766
Q ss_pred HHHHH
Q 011714 230 AVMDG 234 (479)
Q Consensus 230 ~li~~ 234 (479)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66555
No 269
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.27 E-value=2 Score=33.32 Aligned_cols=126 Identities=14% Similarity=0.122 Sum_probs=79.8
Q ss_pred HHHHHHHHh-cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 011714 54 AQRFVDRIK-ASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCN 132 (479)
Q Consensus 54 ~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (479)
...++..+. .+.....+.+++.+...+. .+...++.++..+++.+. ...+..++. ..+......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 344455544 4568899999999988774 688899999999987643 444444442 1233445567777888
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 011714 133 KNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKS-GRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCY 202 (479)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 202 (479)
.+-++++.-++..+.. ... .+..+... ++++.|.+++.+- .+...|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~~-----~~~----Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDGN-----FKD----AIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhcC-----HHH----HHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 8888777777766532 222 23333333 6777777777652 255577766665543
No 270
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.26 E-value=3 Score=35.46 Aligned_cols=81 Identities=14% Similarity=0.100 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEASSYG--LAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
..+-.-+..-.+.|++++|.+.|+.+.... -+-...+.-.++.++-+.+++++|+..+++..+.-......-|...|.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 333334444456777888888777776542 112244455556666777777777777777765533323334444444
Q ss_pred HHH
Q 011714 164 SLC 166 (479)
Q Consensus 164 ~~~ 166 (479)
+++
T Consensus 115 gLs 117 (254)
T COG4105 115 GLS 117 (254)
T ss_pred HHH
Confidence 443
No 271
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.21 E-value=6.7 Score=39.21 Aligned_cols=43 Identities=12% Similarity=0.250 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 011714 90 DLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNK 133 (479)
Q Consensus 90 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (479)
.+|..|.+.|++++|.++..+.... .......+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4667777888888888877544432 244445566666666554
No 272
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.15 E-value=2.3 Score=34.43 Aligned_cols=90 Identities=18% Similarity=0.124 Sum_probs=62.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHH-----HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011714 376 VIRTLGKGKKTDEALIHLHHAIEMGHIPRTITF-----NNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKL 450 (479)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (479)
+...+...+++++|..-++..... |....+ ..|.......|.+++|+..++...+.+. .......-++++
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHH
Confidence 345677888888888888877653 222223 3344566778888888888876665432 223344556788
Q ss_pred hccCCHhHHHHHHHHHHhCC
Q 011714 451 DQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 451 ~~~g~~~~A~~~~~~~~~~~ 470 (479)
...|+.++|..-|+++++.+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 88889999999988888876
No 273
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.12 E-value=3.1 Score=35.11 Aligned_cols=224 Identities=22% Similarity=0.142 Sum_probs=121.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCChhhHH
Q 011714 203 VGRVEEAYEMLMNVKNDGLKP-DVYTYTAVMDGFCKVGRSNEAMELLNEAIER-GVTPNVVTFNTLFNGYCKEGTPMKGV 280 (479)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 280 (479)
.+....+...+.......... ....+......+...+++..+...+...... ........+......+...+.+..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 355555666665555443221 2455666666777777777777777766542 12334455666666667777777777
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCC--cCHHHHHHHHHHHhcccchhhccHHHHHHH
Q 011714 281 GLLKLMKKRNCLPDKISYSTLLN-GLLKWGKIRPAVSIFKEMVRFGFE--VDERMMNSLLRGLCMKSWEEKDLLEDAYQV 357 (479)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 357 (479)
..+.........+ ......... .+...|+++.+...+.+....... ............+ ...++.+.+...
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~a~~~ 189 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALL-----EALGRYEEALEL 189 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHH-----HHhcCHHHHHHH
Confidence 7777776644332 122222222 566777777777777776442110 1111111111111 134666666666
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 011714 358 FEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPR-TITFNNVIQALCGEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (479)
+..............+..+...+...++++.|...+...... .|+ ...+..+...+...+..+.+...+.+....
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 190 LEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666665432212345566666666666666676666666553 222 233333333333555566666666666554
No 274
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.10 E-value=0.81 Score=39.77 Aligned_cols=81 Identities=19% Similarity=0.188 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----CCCCCCHhhHH
Q 011714 190 IQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIE-----RGVTPNVVTFN 264 (479)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 264 (479)
..++..++..+...|+++.+...++++..... -+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 44677788888899999999999999988753 3788999999999999999999999988765 48888888877
Q ss_pred HHHHHHH
Q 011714 265 TLFNGYC 271 (479)
Q Consensus 265 ~l~~~~~ 271 (479)
.......
T Consensus 232 ~y~~~~~ 238 (280)
T COG3629 232 LYEEILR 238 (280)
T ss_pred HHHHHhc
Confidence 7777643
No 275
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.08 E-value=2.1 Score=32.89 Aligned_cols=87 Identities=10% Similarity=0.083 Sum_probs=64.6
Q ss_pred CcchHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 011714 48 NPRSLQAQRFVDRIKASPLKERIDIFDSIKKDGTN--WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSI 125 (479)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 125 (479)
.|.....+.-...++.++..+|+..|+.+..+-+. -....--.|+.++.+.+++++|+..+++.++....--..-|..
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 44456667778889999999999999999876432 2456667799999999999999999999987753222345666
Q ss_pred HHHHHHhcC
Q 011714 126 MIRCYCNKN 134 (479)
Q Consensus 126 l~~~~~~~~ 134 (479)
.+.+++...
T Consensus 88 Y~~gL~~~~ 96 (142)
T PF13512_consen 88 YMRGLSYYE 96 (142)
T ss_pred HHHHHHHHH
Confidence 666655433
No 276
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.73 E-value=7.8 Score=38.32 Aligned_cols=323 Identities=16% Similarity=0.133 Sum_probs=165.9
Q ss_pred cCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh--hhHHHHHHHHHhCCC
Q 011714 79 DGTNWSVSDFN-----DLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDF--FEARKVIDCMFDNGY 151 (479)
Q Consensus 79 ~~~~~~~~~~~-----~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~ 151 (479)
-|++.+..-|. .+|.-+...+.+..|+++-..+...-... ...|......+++..+. +++.+.+++-.....
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 35555544443 34556666777777777776665322111 45566566555554321 122222222222211
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------
Q 011714 152 HPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCK----PNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDG------- 220 (479)
Q Consensus 152 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------- 220 (479)
-....|..+.+-...+|+.+-|..+++.=...+-. .+..-+...+.-....|+.+-...++-.+...-
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~ 583 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM 583 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 23445566666666677777776666543222100 011123334444455555555555544443320
Q ss_pred ----CCCCHHHHHHHHH--------HHHccCCHHHHHHHH--HHHHH----CCCCCCHhhHHHHHHHHHhcCCh---hhH
Q 011714 221 ----LKPDVYTYTAVMD--------GFCKVGRSNEAMELL--NEAIE----RGVTPNVVTFNTLFNGYCKEGTP---MKG 279 (479)
Q Consensus 221 ----~~~~~~~~~~li~--------~~~~~~~~~~a~~~~--~~~~~----~~~~~~~~~~~~l~~~~~~~g~~---~~a 279 (479)
.+.....|.-+++ .+...++-.++...| +...+ .+..|+. ....+.+.+.... ++|
T Consensus 584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka 660 (829)
T KOG2280|consen 584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKA 660 (829)
T ss_pred HHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHH
Confidence 0111111211111 111222222222222 11000 1222222 3333444444331 112
Q ss_pred -------HHHHHHHHh-CCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccH
Q 011714 280 -------VGLLKLMKK-RNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLL 351 (479)
Q Consensus 280 -------~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 351 (479)
+++.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.. .||-..+..-+.+++ ..+++
T Consensus 661 ~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa-----~~~kw 731 (829)
T KOG2280|consen 661 LEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALA-----DIKKW 731 (829)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHH-----hhhhH
Confidence 222222222 1323334455666667888999999999887765 577777877777776 56777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHH
Q 011714 352 EDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFL 430 (479)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (479)
++-++.-+..+ .+..|.-.+.+|.+.|+.++|.+++-+.- +.. -...+|.+.|++.+|.++--+
T Consensus 732 eeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 732 EELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHHHH
Confidence 76655544332 24678899999999999999999886532 111 567788999999998876543
No 277
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.54 E-value=0.92 Score=36.74 Aligned_cols=55 Identities=18% Similarity=0.067 Sum_probs=24.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 413 QALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
.++.+.+.++.|+.-..+.++.+ +........-..+|.+..++++|++-|+++++
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34444555555555554444443 11222233333445555555555555555544
No 278
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.50 E-value=6.8 Score=36.89 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011714 195 CLLKGLCYVGRVEEAYEMLMNVKNDGLKP-DVYTYTAVMDGFCKVGRSNEAMELLNEAI 252 (479)
Q Consensus 195 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 252 (479)
.+..++-+.|+.++|++.+++|.+..... .......|+.++...+.+.++..++.+..
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34445555666666666666665432111 22344556666666666666666665543
No 279
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.43 E-value=12 Score=39.36 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 011714 187 KPNIQTYNCLLKGLCYVG--RVEEAYEMLMNVKN 218 (479)
Q Consensus 187 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 218 (479)
.|+ .....++.+|.+.+ .++++++...+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 444 44456777777776 66666666666654
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.40 E-value=1.8 Score=35.10 Aligned_cols=62 Identities=23% Similarity=0.195 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN--SWTFSIMIRCYCNKNDFFEARKVIDCMF 147 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (479)
..+..+...|.+.|+.+.|++.|.++......+. ...+-.+|+.....+++..+...+.+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5567788888888888888888888776644333 4456677777777888887777776665
No 281
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.39 E-value=4.3 Score=34.24 Aligned_cols=224 Identities=18% Similarity=0.120 Sum_probs=119.1
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 011714 98 LNEQETAVKFFSEASSYGLA-PNSWTFSIMIRCYCNKNDFFEARKVIDCMFDN-GYHPNVTTFTILVNSLCKSGRLKEAL 175 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~ 175 (479)
.+....+...+......... .....+......+...+++..+...+...... ........+..+...+...+....+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34455555555555543211 12456666666677777777777777666542 22344555666666666667777777
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011714 176 EVLDQMGRIGCKPNIQTYNCLLK-GLCYVGRVEEAYEMLMNVKNDGL--KPDVYTYTAVMDGFCKVGRSNEAMELLNEAI 252 (479)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 252 (479)
+.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7777766543222 122222222 56677777777777777644211 0123333333334555667777777776666
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 253 ERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 253 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
..........+..+...+...++++.+...+......... ....+..+...+...+..+.+...+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5421112445555666666666666666666666554211 122233333333344455555555555544
No 282
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.38 E-value=3.9 Score=33.78 Aligned_cols=186 Identities=16% Similarity=0.047 Sum_probs=97.5
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHH
Q 011714 234 GFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRP 313 (479)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 313 (479)
.|-..|-+.-|.--|.+.....+. -+..||-+.-.+...|+++.|.+.|+...+.+..-+....|.-| ++.-.|+++.
T Consensus 74 lYDSlGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~L 151 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKL 151 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHh
Confidence 355566666677667666664322 34567777777788888888888888887765332222222222 2344677777
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHH-HHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHH
Q 011714 314 AVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFE-KMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIH 392 (479)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 392 (479)
|.+-+...-+.+.... +..+.-.+. +..-++.+|..-+. +.... |..-|...+-.+.-.+-.++ .+
T Consensus 152 Aq~d~~~fYQ~D~~DP---fR~LWLYl~----E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e--~l 218 (297)
T COG4785 152 AQDDLLAFYQDDPNDP---FRSLWLYLN----EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEE--TL 218 (297)
T ss_pred hHHHHHHHHhcCCCCh---HHHHHHHHH----HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHH--HH
Confidence 7766655544332211 222221111 13345555554433 33322 33334433333322111111 12
Q ss_pred HHHHHHcCCCC-------chHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 393 LHHAIEMGHIP-------RTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 393 ~~~~~~~~~~p-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
++++... -.. =..||-.+..-+...|+.++|..+|+..+..+
T Consensus 219 ~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 219 MERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2333221 111 12466777777778888888888888777664
No 283
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.35 E-value=9 Score=37.82 Aligned_cols=146 Identities=15% Similarity=0.137 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHH--H-HHhcCCHHHHHHHHHHHHh-------CCCCCCHHhHHHHHHHHHhcC--
Q 011714 67 KERIDIFDSIKKDGTNWSVSDFNDLLM--A-LVMLNEQETAVKFFSEASS-------YGLAPNSWTFSIMIRCYCNKN-- 134 (479)
Q Consensus 67 ~~a~~~~~~~~~~~~~~~~~~~~~ll~--~-~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-- 134 (479)
..|...++...+.|.. .....-.++. + .....+.+.|+..|..+.+ .| .......+..+|.+..
T Consensus 229 ~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 4566666666555532 1111111111 1 2245566777777776655 33 2224444555555432
Q ss_pred ---ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH----hcCCH
Q 011714 135 ---DFFEARKVIDCMFDNGYHPNVTTFTILVNSLCK-SGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLC----YVGRV 206 (479)
Q Consensus 135 ---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~ 206 (479)
+...|..++...-+.| .|+....-..+..... ..+...|.++|....+.|. ...+-.+..+|. ...+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcCCCH
Confidence 3444666666655554 2233332222222111 1245566666666665551 112222222111 12345
Q ss_pred HHHHHHHHHHHHCC
Q 011714 207 EEAYEMLMNVKNDG 220 (479)
Q Consensus 207 ~~a~~~~~~~~~~~ 220 (479)
..|..++.+..+.|
T Consensus 381 ~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHHHcc
Confidence 55666666655555
No 284
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.28 E-value=8.2 Score=37.15 Aligned_cols=348 Identities=11% Similarity=0.014 Sum_probs=194.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSW-TFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
+...|..++.---...+.+.+..+++.+... .|... -|......=.+.|..+.+.++|++-+. |++.+...|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 5666777777666666667777888877754 45443 556666666788899999999998875 4677777777766
Q ss_pred HHHH-hcCChHHHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---
Q 011714 163 NSLC-KSGRLKEALEVLDQMGRI-GC-KPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFC--- 236 (479)
Q Consensus 163 ~~~~-~~g~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--- 236 (479)
..+. ..|+.+...+.|++.... |. --+...|...|.--...+++.....+|++.++. ....|+....-|.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHH
Confidence 5554 467788888888887653 21 124567788888778888888899999888863 2223333322222
Q ss_pred cc------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHh--HHHHHH------
Q 011714 237 KV------GRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKI--SYSTLL------ 302 (479)
Q Consensus 237 ~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~------ 302 (479)
.. ...+++.++-...... ......+...+-. =..+...+.+.+.. ..+.+-
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~--~~~v~~~~~~s~~l~~~~~~l~~~~~~~ 261 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEEL--EIGVKDSTDPSKSLTEEKTILKRIVSIH 261 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHH--HHHHhhccCccchhhHHHHHHHHHHHHH
Confidence 11 1222222222111110 0000011111111 11111111111111 111111
Q ss_pred -HHHHhcCChHHHHHHHHHHHHcC---CCc----CHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHH
Q 011714 303 -NGLLKWGKIRPAVSIFKEMVRFG---FEV----DERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYG 374 (479)
Q Consensus 303 -~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 374 (479)
.++-......+....++.-+++. +.| +..++...+.... ..|+.+...-.|++..-.-.. -...|-
T Consensus 262 ~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i-----~~g~~~~~~~l~ercli~cA~-Y~efWi 335 (577)
T KOG1258|consen 262 EKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEI-----TLGDFSRVFILFERCLIPCAL-YDEFWI 335 (577)
T ss_pred HHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhh-----hcccHHHHHHHHHHHHhHHhh-hHHHHH
Confidence 11222222333334444443321 122 3344555555443 668888888888876532111 235566
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHhcc
Q 011714 375 IVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSR-TSYDMLITKLDQL 453 (479)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 453 (479)
..+......|+.+-|..++....+.-++-.+.+-..-...+-..|++..|..+++.+.+.. |+. ..-..-+....+.
T Consensus 336 ky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~ 413 (577)
T KOG1258|consen 336 KYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRK 413 (577)
T ss_pred HHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHh
Confidence 6777777779999998888877665433233222222223445789999999999998765 433 3333344556678
Q ss_pred CCHhHHHH
Q 011714 454 EKSYDACA 461 (479)
Q Consensus 454 g~~~~A~~ 461 (479)
|..+.+..
T Consensus 414 ~~~~~~~~ 421 (577)
T KOG1258|consen 414 GNLEDANY 421 (577)
T ss_pred cchhhhhH
Confidence 88888773
No 285
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.24 E-value=12 Score=39.15 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhcC--ChhhHHHHHHHHH
Q 011714 122 TFSIMIRCYCNKN--DFFEARKVIDCMF 147 (479)
Q Consensus 122 ~~~~l~~~~~~~~--~~~~a~~~~~~~~ 147 (479)
-...+|.+|.+.+ .++.++....+..
T Consensus 792 ~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 792 FNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred hhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3345556666655 5555555555554
No 286
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.19 E-value=0.97 Score=31.67 Aligned_cols=62 Identities=11% Similarity=0.113 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011714 386 TDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLIT 448 (479)
Q Consensus 386 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (479)
.-++.+-+..+....+.|++.+..+.++||.+.+++..|.++|+-...+. ..+...|..++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 34455556666666777888888888888888888888888887666443 223445555543
No 287
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.12 E-value=0.11 Score=28.63 Aligned_cols=32 Identities=13% Similarity=-0.039 Sum_probs=18.4
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHH
Q 011714 428 LFLMYEHAKIPSRTSYDMLITKLDQLEKSYDAC 460 (479)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 460 (479)
+++.++.. +-+...|..+...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444443 445666666666666666666654
No 288
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.04 E-value=1.8 Score=35.15 Aligned_cols=61 Identities=11% Similarity=0.153 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011714 262 TFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPD--KISYSTLLNGLLKWGKIRPAVSIFKEMV 322 (479)
Q Consensus 262 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (479)
.+..+...|++.|+.+.|++.+.++.+....+. ...+..+|+.....+++..+.....++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455666677777777777777777666533332 2345556666667777777666666554
No 289
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.90 E-value=6.5 Score=35.00 Aligned_cols=24 Identities=8% Similarity=0.184 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHhCCCCCCHHHHHH
Q 011714 137 FEARKVIDCMFDNGYHPNVTTFTI 160 (479)
Q Consensus 137 ~~a~~~~~~~~~~~~~~~~~~~~~ 160 (479)
++...+++.|.+.|+..+..+|-+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHH
Confidence 344455555555555555444433
No 290
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.79 E-value=0.26 Score=26.96 Aligned_cols=27 Identities=30% Similarity=0.226 Sum_probs=17.0
Q ss_pred hHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 442 SYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
+|..++.+|...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455666666666666666666666665
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.61 E-value=0.28 Score=27.39 Aligned_cols=23 Identities=9% Similarity=0.028 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHH
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHH 395 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~ 395 (479)
|..|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555555555
No 292
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.49 E-value=0.93 Score=32.12 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011714 388 EALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLIT 448 (479)
Q Consensus 388 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (479)
+..+-+..+....+.|++.+..+.+.+|.+.+++..|.++|+-...+. .+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 444455555556677788888888888888888888888887776553 222335665554
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.27 E-value=4.6 Score=31.75 Aligned_cols=86 Identities=12% Similarity=-0.159 Sum_probs=42.8
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALL 426 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 426 (479)
..++.+++..++..+....+. ....-..-...+...|++.+|+.+|+++.+.. |....-..|+..|.....-..=..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~Wr~ 98 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSWRR 98 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHHHH
Confidence 445667777777766654433 22222233444566777777777777765432 333333344444433333223333
Q ss_pred HHHHHHhCC
Q 011714 427 LLFLMYEHA 435 (479)
Q Consensus 427 ~~~~~~~~~ 435 (479)
+-+++.+.+
T Consensus 99 ~A~evle~~ 107 (160)
T PF09613_consen 99 YADEVLESG 107 (160)
T ss_pred HHHHHHhcC
Confidence 344444443
No 294
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.24 E-value=6.7 Score=33.58 Aligned_cols=184 Identities=12% Similarity=0.079 Sum_probs=91.8
Q ss_pred ChHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHccCCH
Q 011714 170 RLKEALEVLDQMGRIGCKPN---IQTYNCLLKGLCYVGRVEEAYEMLMNVKND---GL--KPDVYTYTAVMDGFCKVGRS 241 (479)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~li~~~~~~~~~ 241 (479)
++++|+.-|.+..+...... -.+...++..+.+.+++++....|.++... .+ .-+....|.+++......+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 45566666655554321111 122334455566666666666666555421 01 11234455555555544444
Q ss_pred HHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC------------CCCCCHhHHHHHHHH
Q 011714 242 NEAMELLNEAIER-----GVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR------------NCLPDKISYSTLLNG 304 (479)
Q Consensus 242 ~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------~~~~~~~~~~~l~~~ 304 (479)
+-...+++.-++. +-..--.|-+.|...|...|.+.+..++++++... |.. =...|..-|..
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQ-LLEiYAlEIQm 200 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQ-LLEIYALEIQM 200 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccch-hhhhHhhHhhh
Confidence 4444444332211 11111122244566666677777777777666432 111 12456667777
Q ss_pred HHhcCChHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHhcccchhhccHHHHH
Q 011714 305 LLKWGKIRPAVSIFKEMVRFGF-EVDERMMNSLLRGLCMKSWEEKDLLEDAY 355 (479)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 355 (479)
|....+-.+...+|++.+...- .|. .....+++-|.-...-+.|.+++|-
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPH-PlImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPH-PLIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCc-hHHHhHHHHcCCccccccchHHHHH
Confidence 8777777777777777653322 233 3334455555433334556666654
No 295
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.11 E-value=6.6 Score=33.19 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCcCHHHHHHHHHHHhcccchhhccHHHHHHHHH
Q 011714 297 SYSTLLNGLLKWGKIRPAVSIFKEMVRFG---FEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFE 359 (479)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~ 359 (479)
.|...|-.+....|+..|...++.-...+ -..+..+...|+.+| ..|+.+++.+++.
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay------d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY------DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh------ccCCHHHHHHHHc
Confidence 34455555666667777777777633222 233556666777776 5677777666653
No 296
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.92 E-value=8 Score=33.74 Aligned_cols=168 Identities=11% Similarity=0.113 Sum_probs=112.4
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHhHHHHHHHHHhc-C-ChhhHHHHH
Q 011714 67 KERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASS-YGLAPNSWTFSIMIRCYCNK-N-DFFEARKVI 143 (479)
Q Consensus 67 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~ 143 (479)
++-+..++-+...-..-...-|..|+. ++....+|+++|+.... ..+--|..+...+++..... + ....-.++.
T Consensus 113 ~Dli~FL~~~i~~~~~~k~~~Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV 189 (292)
T PF13929_consen 113 EDLISFLKLVIINLSSNKSFNYWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVV 189 (292)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHH
Confidence 445555555443222111122555543 34556788888884332 23566888888888887762 2 333344555
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----H
Q 011714 144 DCMFDN-GYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRI-GCKPNIQTYNCLLKGLCYVGRVEEAYEMLMN-----V 216 (479)
Q Consensus 144 ~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~ 216 (479)
+-+... +..++..+...++..+++.+++.+-.++++..... +...|...|..+|+.....|+..-..++.++ +
T Consensus 190 ~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwi 269 (292)
T PF13929_consen 190 DFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWI 269 (292)
T ss_pred HHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEe
Confidence 555433 34678888889999999999999999999988765 5567888999999999999999888887765 3
Q ss_pred HHCCCCCCHHHHHHHHHHHHc
Q 011714 217 KNDGLKPDVYTYTAVMDGFCK 237 (479)
Q Consensus 217 ~~~~~~~~~~~~~~li~~~~~ 237 (479)
++.++..+...-..+-+.+.+
T Consensus 270 kR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 270 KRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred eecCCcCCHHHHHHHHHHHHh
Confidence 455677777666666555443
No 297
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.68 E-value=0.55 Score=41.27 Aligned_cols=50 Identities=16% Similarity=0.014 Sum_probs=27.6
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAI 397 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 397 (479)
++|.+++|++.|.......+. +++.+..-..+|.+.+++..|..-...++
T Consensus 109 KQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 109 KQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 456666666666655544332 45555555566666666655555444443
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.61 E-value=5.6 Score=31.30 Aligned_cols=50 Identities=10% Similarity=0.028 Sum_probs=21.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHh-HHHHHHHHHhcCChhhHHHHHHHHHh
Q 011714 97 MLNEQETAVKFFSEASSYGLAPNSWT-FSIMIRCYCNKNDFFEARKVIDCMFD 148 (479)
Q Consensus 97 ~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (479)
+.++.+++..++.-+.-. .|.... -..-...++..|++.+|..+++++..
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555554432 222211 11122334445555555555555543
No 299
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.54 E-value=11 Score=34.60 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=42.8
Q ss_pred ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC---chHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011714 369 DPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIP---RTITFNNVIQALCGEGKIDKALLLLFLMYE 433 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (479)
...+|..++..+.+.|.++.|...+.++...+... .+.+...-+......|+..+|+..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33567777788888888888888887776543111 233444445566667777888877777666
No 300
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.52 E-value=0.26 Score=27.11 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=11.4
Q ss_pred ChhhHHHHHHHHhcCCCHHHHH
Q 011714 369 DPGTYGIVIRTLGKGKKTDEAL 390 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~ 390 (479)
+...|+.+..+|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4445555555555555555543
No 301
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.10 E-value=19 Score=36.59 Aligned_cols=224 Identities=15% Similarity=0.086 Sum_probs=119.5
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHh-------hHHHHHH-HHHhcCChhhHHHHHHHHHhC----CCCCCHhHHHHHHH
Q 011714 236 CKVGRSNEAMELLNEAIERGVTPNVV-------TFNTLFN-GYCKEGTPMKGVGLLKLMKKR----NCLPDKISYSTLLN 303 (479)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 303 (479)
....++.+|..++.++...-..|+.. .++.+-. .....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678899999988876542222221 2333322 334678899999888877654 22345566777778
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHH---HHHHHhcccchhhcc--HHHHHHHHHHHHhCCC--CC----Chhh
Q 011714 304 GLLKWGKIRPAVSIFKEMVRFGFEVDERMMNS---LLRGLCMKSWEEKDL--LEDAYQVFEKMTKKVS--VT----DPGT 372 (479)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~~--~~----~~~~ 372 (479)
+..-.|++++|..+.....+..-.-+...+.. +..+-.. ..+|. ..+....|........ .| -..+
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il---~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEIL---EAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 88889999999988877654322223333322 2222211 24452 3333444444332211 11 1123
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcC--CCCchH----HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC----CHhh
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIEMG--HIPRTI----TFNNVIQALCGEGKIDKALLLLFLMYEHAKIP----SRTS 442 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~ 442 (479)
+..+..++.+ .+.+..-...-.+.| ..|... .+..|+......|++++|...++++......+ +...
T Consensus 583 r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a 659 (894)
T COG2909 583 RAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLA 659 (894)
T ss_pred HHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence 4444444444 333332222222211 122221 22356777888999999999999887654322 2222
Q ss_pred HHHHHHHH--hccCCHhHHHHHHHH
Q 011714 443 YDMLITKL--DQLEKSYDACALYGA 465 (479)
Q Consensus 443 ~~~l~~~~--~~~g~~~~A~~~~~~ 465 (479)
-...+... ..+|+...+.....+
T Consensus 660 ~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 660 AAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhhHHHhcccCCHHHHHHHHHh
Confidence 23333332 356777777666555
No 302
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.97 E-value=0.62 Score=25.28 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=23.0
Q ss_pred hhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 441 TSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
..|..+..++...|++++|++.++++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45677888888899999999999988874
No 303
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.73 E-value=17 Score=35.18 Aligned_cols=369 Identities=10% Similarity=0.042 Sum_probs=213.8
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH-hcCChhhHHHHHHH
Q 011714 67 KERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYC-NKNDFFEARKVIDC 145 (479)
Q Consensus 67 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~ 145 (479)
..+..+++.+...- +.----|......=.+.|..+.+.++|++... |++.+...|...+.-+. ..|+.+.....|+.
T Consensus 62 ~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 62 DALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 34444555555332 21223455566666778999999999999886 56777888877775544 45778888888888
Q ss_pred HHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH---Hhc------CCHHHHHHHHH
Q 011714 146 MFDN-GY-HPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGL---CYV------GRVEEAYEMLM 214 (479)
Q Consensus 146 ~~~~-~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~------~~~~~a~~~~~ 214 (479)
.... |. -.+...|...|..-..++++.....+++++++. |. .-++..-.-| ... ...+++.++-.
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~ 215 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQLLNQNEEKILLSIDELIQLRS 215 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhh
Confidence 8753 21 124567888888888899999999999999974 32 2233332222 222 23455555544
Q ss_pred HHHHC----CCCCCHHHHHHHHHH-------------------------HHccCCHHHHHHHHHHHHHC---CCC----C
Q 011714 215 NVKND----GLKPDVYTYTAVMDG-------------------------FCKVGRSNEAMELLNEAIER---GVT----P 258 (479)
Q Consensus 215 ~~~~~----~~~~~~~~~~~li~~-------------------------~~~~~~~~~a~~~~~~~~~~---~~~----~ 258 (479)
..... ...+.......-+.- +.......+....++.-++. .++ +
T Consensus 216 ~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~a 295 (577)
T KOG1258|consen 216 DVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQA 295 (577)
T ss_pred hHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHH
Confidence 44421 000111111111111 11111122222223222221 111 3
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CcCHHHHHHH
Q 011714 259 NVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGF--EVDERMMNSL 336 (479)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l 336 (479)
+..+|...+..-...|+.+.+.-++++..-. +..-...|-..+.-....|+.+.|..++....+--+ .|....+.+.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4567788888888899999998888877542 111223344444444555888888887776654322 2333333333
Q ss_pred HHHHhcccchhhccHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhcCCCHHHHH---HHHHHHHHcCCCCchHHHHHHH
Q 011714 337 LRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDP-GTYGIVIRTLGKGKKTDEAL---IHLHHAIEMGHIPRTITFNNVI 412 (479)
Q Consensus 337 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~~~~l~ 412 (479)
+.- ..|++..|..+++.+...- |+. ..-..-+....+.|..+.+. +++....+.. -+..+...+.
T Consensus 375 f~e-------~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~ 443 (577)
T KOG1258|consen 375 FEE-------SNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLY 443 (577)
T ss_pred HHH-------hhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHH
Confidence 332 4589999999999998765 332 22333345556777777777 4443333221 1222222222
Q ss_pred H-----HHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 011714 413 Q-----ALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLE 454 (479)
Q Consensus 413 ~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (479)
- .+.-.++.+.|..++.++.+.. +++...|..++......+
T Consensus 444 ~~~~r~~~~i~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 444 VKFARLRYKIREDADLARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 1 2234688999999999998874 667778888888766655
No 304
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.54 E-value=2.5 Score=29.75 Aligned_cols=44 Identities=11% Similarity=-0.044 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011714 69 RIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEAS 112 (479)
Q Consensus 69 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 112 (479)
..+-++.+...+..|++.+..+.+++|.+.+++..|+++|+-.+
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444455555566677777777777777777777777777655
No 305
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.30 E-value=9.4 Score=31.67 Aligned_cols=161 Identities=16% Similarity=0.044 Sum_probs=83.6
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCHHHHHHHHH
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIG-CKPNIQTYNCLLK 198 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~ 198 (479)
+..||-+.-.+...|+++.|.+.|+...+.+..-+-...|.-|..| -.|++.-|.+-+.+.-+.+ -.|-...|.-++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 5678888888888888888888888888765433333344434333 3577777776666655442 112122232222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHCCCC------CCHhhHHHHHHHHH
Q 011714 199 GLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDG-FCKVGRSNEAMELLNEAIERGVT------PNVVTFNTLFNGYC 271 (479)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~ 271 (479)
-..-++.+|..-+.+--+ ..|..-|...|-. |...=..+ .+++.+...... .-..||--+...+.
T Consensus 177 --E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred --HhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHHHh
Confidence 233455555544433221 1133333322222 21111111 122222211000 11346777778888
Q ss_pred hcCChhhHHHHHHHHHhCC
Q 011714 272 KEGTPMKGVGLLKLMKKRN 290 (479)
Q Consensus 272 ~~g~~~~a~~~~~~~~~~~ 290 (479)
..|+.++|..+|+-....+
T Consensus 249 ~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 249 SLGDLDEATALFKLAVANN 267 (297)
T ss_pred ccccHHHHHHHHHHHHHHh
Confidence 8888888888888777654
No 306
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.27 E-value=0.62 Score=25.37 Aligned_cols=27 Identities=22% Similarity=0.096 Sum_probs=14.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011714 372 TYGIVIRTLGKGKKTDEALIHLHHAIE 398 (479)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 398 (479)
+|..++.++...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344555555555555555555555554
No 307
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.98 E-value=0.75 Score=26.39 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=21.4
Q ss_pred hhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 441 TSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
.+++.|...|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888888766
No 308
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.39 E-value=6.7 Score=34.47 Aligned_cols=48 Identities=27% Similarity=0.432 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011714 205 RVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAI 252 (479)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 252 (479)
+.++++.++..=.+.|+-||..+++.+++.+.+.+++.+|.++.-.|+
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344555555555555555566666666666666665555555554443
No 309
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.38 E-value=6.1 Score=36.82 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=22.1
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 011714 381 GKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 381 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (479)
...|+++.+...+...... +.....+..++++...+.|+++.|...-+.|...
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ 386 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN 386 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc
Confidence 3444444444444333221 1122333444444444444444444444444433
No 310
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.26 E-value=20 Score=33.99 Aligned_cols=165 Identities=15% Similarity=0.070 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHH
Q 011714 223 PDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLL 302 (479)
Q Consensus 223 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 302 (479)
.|.....+++..+.....+.-.+.+..+|...| -+-..|..++.+|..+ ..++-..+|+++.+..+. |+..-..|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355555666667766666666666666776654 2455666777777766 456666777766665443 333333444
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCc-----CHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhC-CCCCChhhHHHH
Q 011714 303 NGLLKWGKIRPAVSIFKEMVRFGFEV-----DERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKK-VSVTDPGTYGIV 376 (479)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l 376 (479)
..|-+ ++..++..+|.++..+-++- -...+..+.... ..+.+....+...+... +...-...+..+
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i-------~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv 211 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI-------GDDKDFFLRLQKKIQTKLGEGRGSVLMQDV 211 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc-------cccHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 43333 66666666766665432110 011222222211 24455555555555432 111122334444
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc
Q 011714 377 IRTLGKGKKTDEALIHLHHAIEM 399 (479)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~ 399 (479)
-.-|....++++|++++..+.+.
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhh
Confidence 45555566666666666655554
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.08 E-value=9 Score=29.68 Aligned_cols=51 Identities=14% Similarity=-0.122 Sum_probs=28.5
Q ss_pred hccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 011714 348 KDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEM 399 (479)
Q Consensus 348 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 399 (479)
.++.+++..+++.+.-..+. ....-..-...+...|++.+|+.+|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 46666666666666654333 2222222334455667777777777776654
No 312
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.06 E-value=0.87 Score=24.67 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=13.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIE 398 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 398 (479)
|..+..++...|++++|++.+++.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44445555555555555555555544
No 313
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.76 E-value=51 Score=37.92 Aligned_cols=152 Identities=11% Similarity=0.070 Sum_probs=86.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011714 90 DLLMALVMLNEQETAVKFFSEASSYGL--APNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCK 167 (479)
Q Consensus 90 ~ll~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 167 (479)
.+..+-.+.+.+.+|+..++.-..... .-....|..+...|...++.+...-+...... +...+. -|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHh
Confidence 344455667788888888877311100 11233344444578888888877766654221 222222 2334456
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHccCCHHHHHH
Q 011714 168 SGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTY-TAVMDGFCKVGRSNEAME 246 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~ 246 (479)
.|++..|...|+++.+.+ ++...+++.++......|.+..++-..+-..... .+....+ +.-+.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 788888888888888764 3346667777777667777777766555544331 2222222 222344456666666666
Q ss_pred HHH
Q 011714 247 LLN 249 (479)
Q Consensus 247 ~~~ 249 (479)
.+.
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 554
No 314
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.37 E-value=30 Score=34.86 Aligned_cols=116 Identities=14% Similarity=0.033 Sum_probs=62.7
Q ss_pred ccHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHH
Q 011714 349 DLLEDAYQVFEKMTKKVSVTD---PGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKAL 425 (479)
Q Consensus 349 ~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 425 (479)
.+.+.|...+.........+. ...+..+....+..+...+|...++...... .+......-+......++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 455777777776643322111 1223444433344332455666555433221 23334444444555777777777
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHH
Q 011714 426 LLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAAL 467 (479)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (479)
..+..|.... .-...-...+..++...|+.++|...|+.+.
T Consensus 333 ~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 333 TWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777765432 2233444556667666788888888777763
No 315
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.06 E-value=1.4 Score=23.89 Aligned_cols=29 Identities=24% Similarity=0.224 Sum_probs=22.5
Q ss_pred hhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 441 TSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
.+|..+...|...|++++|.+.|++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35667778888888888888888888763
No 316
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.01 E-value=11 Score=33.28 Aligned_cols=103 Identities=16% Similarity=0.188 Sum_probs=72.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHh
Q 011714 185 GCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDG---LKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVV 261 (479)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 261 (479)
|.+....+...++..-....+++.++.++-+++..- ..|+. +-.+.++.+.+ -++++++.++..=+..|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 445555566666666666778888888887776531 11221 12233443333 36778888888888899999999
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 262 TFNTLFNGYCKEGTPMKGVGLLKLMKKR 289 (479)
Q Consensus 262 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (479)
+++.+|+.+.+.+++.+|.++.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999998887777654
No 317
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.62 E-value=14 Score=30.16 Aligned_cols=92 Identities=10% Similarity=0.042 Sum_probs=38.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 011714 303 NGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGK 382 (479)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (479)
..+...|++++|...++..+.. +....+..++..-........|.+++|+..++.....+.. ......-.+.+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence 4455666666666666655532 1222222222211100001345555555555444433211 1112223344555
Q ss_pred CCCHHHHHHHHHHHHHc
Q 011714 383 GKKTDEALIHLHHAIEM 399 (479)
Q Consensus 383 ~g~~~~A~~~~~~~~~~ 399 (479)
.|+-++|..-|++.+..
T Consensus 172 kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 172 KGDKQEARAAYEKALES 188 (207)
T ss_pred cCchHHHHHHHHHHHHc
Confidence 55555555555555443
No 318
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.53 E-value=6.4 Score=32.28 Aligned_cols=72 Identities=14% Similarity=0.063 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHhccCCHhHH
Q 011714 387 DEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA---KIPSRTSYDMLITKLDQLEKSYDA 459 (479)
Q Consensus 387 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A 459 (479)
++|.+.|-.+...+.--++.....|...|. ..+.++++.++-+..+.. -.+|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 444444444444443334443333333333 345566665555555432 134555666666666666665554
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.39 E-value=1.8 Score=24.77 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEAS 112 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~ 112 (479)
.+++.|...|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 455666666666666666666666544
No 320
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.14 E-value=20 Score=31.40 Aligned_cols=113 Identities=12% Similarity=0.126 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cC-ChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011714 136 FFEARKVIDCMFD-NGYHPNVTTFTILVNSLCK-SG-RLKEALEVLDQMGRI-GCKPNIQTYNCLLKGLCYVGRVEEAYE 211 (479)
Q Consensus 136 ~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 211 (479)
+.+|+.+|+..-. ..+--|..+...+++.... .+ ....-.++.+-+... +..++..+...++..++..+++.+..+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4455555552211 1233455555666655554 11 122222333333221 234555566666666666666666666
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 011714 212 MLMNVKND-GLKPDVYTYTAVMDGFCKVGRSNEAMELL 248 (479)
Q Consensus 212 ~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 248 (479)
+++..... +..-|...|..+|+.....|+..-..++.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 66655544 34445666666666666666655444443
No 321
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.07 E-value=6.8 Score=31.46 Aligned_cols=110 Identities=18% Similarity=0.120 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHH---HHHHhcCCCHHHH-------HHHHHHHHHcCCCCc-hHHHHHHHHHHHcC-
Q 011714 351 LEDAYQVFEKMTKKVSVTDPGTYGIV---IRTLGKGKKTDEA-------LIHLHHAIEMGHIPR-TITFNNVIQALCGE- 418 (479)
Q Consensus 351 ~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A-------~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~- 418 (479)
++.|++.++.....++. |...++.- +.-+.+.....++ +.-|++++. +.|+ ..++..+..++...
T Consensus 7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 55666666665555444 45444333 3333333443444 444445544 4565 36777777776542
Q ss_pred ---CC-------HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCC
Q 011714 419 ---GK-------IDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGV 471 (479)
Q Consensus 419 ---g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 471 (479)
.+ +++|...|++..+. .|+...|+.-+.... +|-++..++.++++
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 23 55556666666654 588888887776653 45666666666554
No 322
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.91 E-value=18 Score=35.10 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=8.9
Q ss_pred HHHcCCCHHHHHHHHH
Q 011714 414 ALCGEGKIDKALLLLF 429 (479)
Q Consensus 414 ~~~~~g~~~~a~~~~~ 429 (479)
++...|+++++.+++.
T Consensus 730 ~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHcCCHHHHHHHHH
Confidence 4445566666655553
No 323
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.90 E-value=14 Score=30.39 Aligned_cols=72 Identities=13% Similarity=0.017 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCCHHHH
Q 011714 172 KEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND---GLKPDVYTYTAVMDGFCKVGRSNEA 244 (479)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a 244 (479)
++|.+.|-++...+.--++.....|...| ...+.++++.++....+. +-.+|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 45555555555544333333333333333 344555555555554432 2234555555555555555555554
No 324
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.75 E-value=9.4 Score=27.28 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=18.2
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011714 105 VKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMF 147 (479)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (479)
.+-++.+....+.|++.+....+.+|.+.+++..|.++++.++
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444444444444444444444445544444444444
No 325
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.69 E-value=30 Score=32.96 Aligned_cols=181 Identities=13% Similarity=0.080 Sum_probs=122.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 011714 187 KPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTL 266 (479)
Q Consensus 187 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 266 (479)
..|....-+++..+..+-.+.-+..+..+|...| .+...|..++.+|... ..++-..+++++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4567777888899988888999999999998865 3677888999999888 567888999988887554 55545555
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCC--C---HhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCcCHHHHHHHHHHH
Q 011714 267 FNGYCKEGTPMKGVGLLKLMKKRNCLP--D---KISYSTLLNGLLKWGKIRPAVSIFKEMVRF-GFEVDERMMNSLLRGL 340 (479)
Q Consensus 267 ~~~~~~~g~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 340 (479)
...|-+ ++..++..+|.++..+-++. + ...|.-+.. .-..+.+....+..++... |..--...+..+..-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 555555 88888998998886653221 1 123333332 1245677777777777643 3322233333333444
Q ss_pred hcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011714 341 CMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTL 380 (479)
Q Consensus 341 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (479)
+...++++|++++..+.+.+.. |..+-..++..+
T Consensus 216 -----s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 216 -----SENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred -----ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 4678999999999988887655 555555555544
No 326
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=86.47 E-value=37 Score=33.80 Aligned_cols=66 Identities=11% Similarity=0.151 Sum_probs=34.2
Q ss_pred CCCcchHHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011714 46 KENPRSLQAQRFVDRIKASPLKERIDIFDSIKKDG-TNWS-VSDFNDLLMALVMLNEQETAVKFFSEAS 112 (479)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 112 (479)
...+.+.....+++.+.........+..+++.... +..+ +.-|+ .+..+.-.|.++.|.+++....
T Consensus 108 ~~~~~~~v~~~Ll~WvNr~~~~~~~~~~~~vl~~~~p~~~~p~FW~-~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 108 DSQPRGPVPEQLLDWVNRFHFPPSEELAEEVLSSEPPYEHDPDFWD-YVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp TTTTHHHHHHHHHHHHHTTS--SHHHHHTTSCSS-HSCSGSHHHHH-HHHHHHHTT-HHHHHHHH-TTT
T ss_pred CcccCCchHHHHHHHHHHhCCCCchhHHHHHhccCCCCccchhHHH-HHHHHHHcCCHHHHHHHHHhcc
Confidence 34444555666777773333222222222222211 2222 56666 7888888999999999985433
No 327
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.23 E-value=6.4 Score=32.62 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011714 89 NDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMF 147 (479)
Q Consensus 89 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (479)
+..++.+.+.++.++|+...++-++.. +.|...-..++..+|-.|++++|..-++-.-
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 444555555666666666665555443 3444455555666666666666655554443
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.60 E-value=18 Score=35.01 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=62.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 011714 93 MALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLK 172 (479)
Q Consensus 93 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 172 (479)
....+.|+++.|.++..+.. +..-|..|..+....+++..|.+.|..... |..|+-.+...|+-+
T Consensus 645 elal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAE 709 (794)
T ss_pred hhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChh
Confidence 34456677777776655433 455677777777777777777777765432 334555666666666
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011714 173 EALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNV 216 (479)
Q Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 216 (479)
....+-....+.| +-|. + ..+|...|+++++.+++..-
T Consensus 710 ~l~~la~~~~~~g-~~N~-A----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 710 GLAVLASLAKKQG-KNNL-A----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHHHhhc-ccch-H----HHHHHHcCCHHHHHHHHHhc
Confidence 5555555555554 2222 2 22455567777777766544
No 329
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.35 E-value=50 Score=34.30 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=19.7
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 011714 269 GYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLL 306 (479)
Q Consensus 269 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 306 (479)
.|......+-++.+++.+....-.++....+.++..|+
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 34455556666666666655443344444444444443
No 330
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.07 E-value=16 Score=28.37 Aligned_cols=50 Identities=10% Similarity=0.065 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 98 LNEQETAVKFFSEASSYGLAPNSW-TFSIMIRCYCNKNDFFEARKVIDCMFDN 149 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (479)
.++.+++..+++.|.-. .|+.. .-..-...+...|++++|.++++.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 56666666666665532 23211 1112223344566666666666666554
No 331
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.94 E-value=0.43 Score=37.21 Aligned_cols=82 Identities=20% Similarity=0.216 Sum_probs=39.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCh
Q 011714 232 MDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKI 311 (479)
Q Consensus 232 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (479)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++ . .+..-...++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~----~~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---T----SNNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---S----SSSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---c----ccccCHHHHHHHHHhcchH
Confidence 44444555555555555555554434445555666666666655555555544 1 1112223444555555555
Q ss_pred HHHHHHHHH
Q 011714 312 RPAVSIFKE 320 (479)
Q Consensus 312 ~~a~~~~~~ 320 (479)
+++..++.+
T Consensus 87 ~~a~~Ly~~ 95 (143)
T PF00637_consen 87 EEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 555555444
No 332
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.77 E-value=1.8 Score=25.45 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=17.5
Q ss_pred HHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 445 MLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
.|..+|...|+.+.|.+++++.+..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35567777777777777777776543
No 333
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=84.71 E-value=7.7 Score=28.89 Aligned_cols=60 Identities=12% Similarity=0.183 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011714 388 EALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLIT 448 (479)
Q Consensus 388 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (479)
+..+-+......++.|++.+....+++|.+.+|+..|.++|+-+..+. .+....|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~-g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC-GAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-ccHHHHHHHHHH
Confidence 344445555666777888888888888888888888888888776553 223334555543
No 334
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.57 E-value=9 Score=31.83 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=25.5
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011714 162 VNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNV 216 (479)
Q Consensus 162 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 216 (479)
++.+.+.+.+.+++...++-.+.. +.|..+-..++..++-.|++++|..-++-.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 344444455555555554444432 233344444555555555555555444443
No 335
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.48 E-value=3 Score=24.57 Aligned_cols=26 Identities=19% Similarity=0.428 Sum_probs=18.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC
Q 011714 300 TLLNGLLKWGKIRPAVSIFKEMVRFG 325 (479)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 325 (479)
.+..+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35667777777777777777777543
No 336
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.12 E-value=34 Score=31.37 Aligned_cols=65 Identities=15% Similarity=0.124 Sum_probs=43.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---CHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHh
Q 011714 294 DKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEV---DERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTK 363 (479)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~ 363 (479)
...++...++.+.+.|.++.|...+..+...+... .......-...+- ..|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw-----~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLW-----AQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHH-----HcCCHHHHHHHHHHHHH
Confidence 45678888889999999999999998887643211 1222222223332 45888888888887776
No 337
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.89 E-value=1.9 Score=23.01 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=21.2
Q ss_pred HHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 443 YDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
+-.++.++.+.|++++|.+.|+++++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445667788888889999888888774
No 338
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=83.54 E-value=29 Score=30.21 Aligned_cols=23 Identities=26% Similarity=0.140 Sum_probs=16.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHH
Q 011714 374 GIVIRTLGKGKKTDEALIHLHHA 396 (479)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~ 396 (479)
.-++..+.+.|.+.+|+.+...+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHH
Confidence 45677888889999988765443
No 339
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.37 E-value=0.43 Score=37.21 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=24.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 011714 197 LKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLN 249 (479)
Q Consensus 197 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 249 (479)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344444445555555555544333344455555555555544444444443
No 340
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=83.05 E-value=18 Score=31.33 Aligned_cols=88 Identities=18% Similarity=0.135 Sum_probs=52.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----
Q 011714 161 LVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFC---- 236 (479)
Q Consensus 161 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---- 236 (479)
=|.+++..|+|.+++...-+.-+.--+.-..+...-|-.|.+.+.+..+.++-..-.+..-.-+...|..++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 4667777788888777665544321122234455556667778887777777776665422223334655555544
Q ss_pred -ccCCHHHHHHHH
Q 011714 237 -KVGRSNEAMELL 248 (479)
Q Consensus 237 -~~~~~~~a~~~~ 248 (479)
=.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 357777777766
No 341
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=82.58 E-value=57 Score=32.83 Aligned_cols=403 Identities=16% Similarity=0.152 Sum_probs=199.2
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHhHHHH-HHHHHh
Q 011714 63 ASPLKERIDIFDSIKKDGTNWSVS-----DFNDLLMALVMLNEQETAVKFFSEASSYG----LAPNSWTFSIM-IRCYCN 132 (479)
Q Consensus 63 ~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~ 132 (479)
..+.++|...++........++.. .-..++..+.+.+... |....++.++.- ..+-...+..+ +..+..
T Consensus 73 T~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~ 151 (608)
T PF10345_consen 73 TENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQ 151 (608)
T ss_pred cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHh
Confidence 456788888887654222122221 2234455666555555 999888866431 12223334444 333334
Q ss_pred cCChhhHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHhhCC---------CCCCHHHHHHHHH
Q 011714 133 KNDFFEARKVIDCMFDNG---YHPNVTTFTILVNSLC--KSGRLKEALEVLDQMGRIG---------CKPNIQTYNCLLK 198 (479)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~ 198 (479)
.++...|.+.++.+.... ..|...++..++.+.. +.+..+++.+.++++.... ..|-..+|..+++
T Consensus 152 ~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~ 231 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD 231 (608)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Confidence 479999999998887432 2344555555555544 4566677777777663321 1345667777776
Q ss_pred HH--HhcCCHHHHHHHHHHHHH-------CC-CC----------------------CCHHH---------HHHHHHH--H
Q 011714 199 GL--CYVGRVEEAYEMLMNVKN-------DG-LK----------------------PDVYT---------YTAVMDG--F 235 (479)
Q Consensus 199 ~~--~~~~~~~~a~~~~~~~~~-------~~-~~----------------------~~~~~---------~~~li~~--~ 235 (479)
.+ ...|+++.+...++++.+ .. .+ +.... ..-++.+ .
T Consensus 232 l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~ 311 (608)
T PF10345_consen 232 LCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHN 311 (608)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHH
Confidence 55 456777777666655532 11 00 00001 1111221 2
Q ss_pred HccCCHHHHHHHHHHHHHC--------CCCCC--------HhhHHHHHH---------HHHhcCChhhHHHHHHHHHhCC
Q 011714 236 CKVGRSNEAMELLNEAIER--------GVTPN--------VVTFNTLFN---------GYCKEGTPMKGVGLLKLMKKRN 290 (479)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~--------~~~~~--------~~~~~~l~~---------~~~~~g~~~~a~~~~~~~~~~~ 290 (479)
+..+..+.|.+++++..+. ...+. ...|...+. ..+-.+++..|...++.+....
T Consensus 312 ~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~ 391 (608)
T PF10345_consen 312 LYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLC 391 (608)
T ss_pred hhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 2344444565555554321 11111 112222222 2235788999999999887542
Q ss_pred C-CC-----CHhHHHHHHHH--HHhcCChHHHHHHHH--------HHHHcCCCcCHHHHHHHHHHHhcccchhhccHHH-
Q 011714 291 C-LP-----DKISYSTLLNG--LLKWGKIRPAVSIFK--------EMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLED- 353 (479)
Q Consensus 291 ~-~~-----~~~~~~~l~~~--~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~- 353 (479)
- .| ....+...+.+ +-..|+.+.|...|. .....+...+..++..+=....... .......+
T Consensus 392 ~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~-~~~~~~~~~ 470 (608)
T PF10345_consen 392 QRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQY-ESSRDDSES 470 (608)
T ss_pred hcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHh-hcccchhhh
Confidence 1 11 12223333333 335699999999997 4444555545444443322222110 11122222
Q ss_pred -HHHHHHHHHhC---CCCCChhhHHHH-HHHHhcCC--CHHHHHHHHHHHHHcC--CCCc----hHHHHHHHHHHHcCCC
Q 011714 354 -AYQVFEKMTKK---VSVTDPGTYGIV-IRTLGKGK--KTDEALIHLHHAIEMG--HIPR----TITFNNVIQALCGEGK 420 (479)
Q Consensus 354 -a~~~~~~~~~~---~~~~~~~~~~~l-~~~~~~~g--~~~~A~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~ 420 (479)
+..+++.+... .+..+..++..+ +.++.... ...++...+.+..+.- ...+ ..+++.+...+. .|+
T Consensus 471 ~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~ 549 (608)
T PF10345_consen 471 ELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGD 549 (608)
T ss_pred HHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCC
Confidence 66777766542 111222333333 33333222 2234444444333211 1111 122333333333 678
Q ss_pred HHHHHHHHHHHHhCCCC-C--CHhhHH-----HHHHHHhccCCHhHHHHHHHHHHh
Q 011714 421 IDKALLLLFLMYEHAKI-P--SRTSYD-----MLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 421 ~~~a~~~~~~~~~~~~~-~--~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
..+.............. | ....|. .+.+.+...|+.++|.....+...
T Consensus 550 ~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 550 VGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 77766555543321111 1 334452 344457888999999998887643
No 342
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.57 E-value=3.5 Score=22.23 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=16.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011714 372 TYGIVIRTLGKGKKTDEALIHLHHAIE 398 (479)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 398 (479)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555666666666666666665554
No 343
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.54 E-value=21 Score=29.28 Aligned_cols=88 Identities=17% Similarity=0.084 Sum_probs=42.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 011714 201 CYVGRVEEAYEMLMNVKNDGLKP----DVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTP 276 (479)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 276 (479)
...|++++|..-|...+..-... ....|..-..++.+.+.++.|+.-....++.+.. .......-..+|.+...+
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhhH
Confidence 44555555555555554431111 1223333344555666666666666555554322 111122223355555666
Q ss_pred hhHHHHHHHHHhC
Q 011714 277 MKGVGLLKLMKKR 289 (479)
Q Consensus 277 ~~a~~~~~~~~~~ 289 (479)
++|+.-|+++...
T Consensus 185 eealeDyKki~E~ 197 (271)
T KOG4234|consen 185 EEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666554
No 344
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.42 E-value=21 Score=31.06 Aligned_cols=90 Identities=13% Similarity=0.092 Sum_probs=60.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH--
Q 011714 124 SIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLC-- 201 (479)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 201 (479)
..=|++++..+++.++....-+--+.--+.-..+...-|-.|.+.+++..+.++-......--.-+...|..++..|.
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 344678888899888887665554332222344555556668889999888888887765432334455776666554
Q ss_pred ---hcCCHHHHHHHH
Q 011714 202 ---YVGRVEEAYEML 213 (479)
Q Consensus 202 ---~~~~~~~a~~~~ 213 (479)
=.|.+++|.++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 468899998887
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.35 E-value=34 Score=30.03 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 011714 264 NTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEM 321 (479)
Q Consensus 264 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (479)
......|..+|.+.+|.++.++.+..+ +.+...+..++..+...||--.+..-+..+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334455666666666666666665543 234555666666666666655555444443
No 346
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=81.48 E-value=27 Score=28.26 Aligned_cols=22 Identities=18% Similarity=0.449 Sum_probs=14.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHh
Q 011714 127 IRCYCNKNDFFEARKVIDCMFD 148 (479)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~ 148 (479)
+-.|.+.|.+++|.++++....
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3456666777777777666665
No 347
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.39 E-value=5.6 Score=26.84 Aligned_cols=46 Identities=24% Similarity=0.177 Sum_probs=24.0
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHcCCCHHHHHHH
Q 011714 382 KGKKTDEALIHLHHAIEMGHIPR--TITFNNVIQALCGEGKIDKALLL 427 (479)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 427 (479)
...+.++|+..|+.+++.-..+. -.++..++.+++..|++++++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666554422221 12445555666666666665554
No 348
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.98 E-value=5.9 Score=26.73 Aligned_cols=48 Identities=15% Similarity=-0.013 Sum_probs=37.5
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHhccCCHhHHHHHHH
Q 011714 417 GEGKIDKALLLLFLMYEHAKIPSR--TSYDMLITKLDQLEKSYDACALYG 464 (479)
Q Consensus 417 ~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~ 464 (479)
...+.++|+..|+...+....+.. .++..++.+|+..|++.+++++--
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999987543322 456778889999999999877643
No 349
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.78 E-value=2.5 Score=21.37 Aligned_cols=20 Identities=20% Similarity=0.034 Sum_probs=10.1
Q ss_pred HHHHHHhccCCHhHHHHHHH
Q 011714 445 MLITKLDQLEKSYDACALYG 464 (479)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~~ 464 (479)
.+..++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555443
No 350
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.77 E-value=36 Score=29.38 Aligned_cols=191 Identities=11% Similarity=0.117 Sum_probs=118.4
Q ss_pred HHhcCChhhHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCC--CCCHHhHHHHHHHHH
Q 011714 60 RIKASPLKERIDIFDSIKKDGT---NWSVSDFNDLLMALVMLNEQETAVKFFSEASS---YGL--APNSWTFSIMIRCYC 131 (479)
Q Consensus 60 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~--~~~~~~~~~l~~~~~ 131 (479)
.++...+++|+.-|..+.+... .+--.++..++....+.+++++....|.++.. ..+ .-+..+.++++..-.
T Consensus 37 ~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS 116 (440)
T KOG1464|consen 37 GLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS 116 (440)
T ss_pred cccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh
Confidence 3566778999999988764332 34556677888899999999999988888753 222 234566778887777
Q ss_pred hcCChhhHHHHHHHHHhC-CCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHhhCCC----C-------CCHHHHHH
Q 011714 132 NKNDFFEARKVIDCMFDN-GYHPNVT----TFTILVNSLCKSGRLKEALEVLDQMGRIGC----K-------PNIQTYNC 195 (479)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~-~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~-------~~~~~~~~ 195 (479)
...+.+...++|+.-.+. .-..+.. +-.-|...|...|++.+..+++.++...-- . .-...|..
T Consensus 117 tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAl 196 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYAL 196 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhh
Confidence 777766666665543321 0001222 224566777777888888888777754210 1 12346777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH-----HccCCHHHHHHHHHHH
Q 011714 196 LLKGLCYVGRVEEAYEMLMNVKND-GLKPDVYTYTAVMDGF-----CKVGRSNEAMELLNEA 251 (479)
Q Consensus 196 l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~-----~~~~~~~~a~~~~~~~ 251 (479)
-|..|....+-.....+|++.... ...|.+... ..|+-| .+.|++++|..-|-++
T Consensus 197 EIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 197 EIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred HhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHH
Confidence 778888888888888888876543 122333332 334433 4567787776544444
No 351
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.64 E-value=13 Score=33.09 Aligned_cols=93 Identities=14% Similarity=0.105 Sum_probs=61.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 011714 93 MALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLK 172 (479)
Q Consensus 93 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 172 (479)
.-|.++|.+++|+..|....... +-|.+++..-..+|.+..++..|..-....+..+ ..-...|..-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 45778899999999998876542 3388888888889999888888777666665432 111233444444444455666
Q ss_pred HHHHHHHHHhhCCCCCC
Q 011714 173 EALEVLDQMGRIGCKPN 189 (479)
Q Consensus 173 ~a~~~~~~~~~~~~~~~ 189 (479)
+|.+-++..... .|+
T Consensus 183 EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 183 EAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHhHHHHHhh--Ccc
Confidence 666666666654 454
No 352
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.85 E-value=3.1 Score=22.14 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=11.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 011714 91 LLMALVMLNEQETAVKFFSEASS 113 (479)
Q Consensus 91 ll~~~~~~~~~~~A~~~~~~~~~ 113 (479)
+..++.+.|++++|.+.|+++.+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34444445555555555555443
No 353
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.32 E-value=47 Score=29.20 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----CCCCCCHhhHH
Q 011714 192 TYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIE-----RGVTPNVVTFN 264 (479)
Q Consensus 192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 264 (479)
+++...+.|...|.+.+|.++.+.....+ +.+...+..++..+...|+--.+.+-++.+.+ .|+..+...++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 45566778888999999999998888764 44777888889999999987777777766643 36665554443
No 354
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.57 E-value=30 Score=27.95 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 011714 206 VEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIER 254 (479)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 254 (479)
+++|...|++... ..|+..+|+.-+.... +|-++..++.+.
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 3444445554444 3567777776666542 355555555554
No 355
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.33 E-value=68 Score=30.53 Aligned_cols=104 Identities=9% Similarity=-0.149 Sum_probs=69.7
Q ss_pred hccHHHHHHHHHHHHh---CCCCC-----ChhhHHHHHHHHhcCCCHHHHHHHHHHHHH-------cCCCCch-------
Q 011714 348 KDLLEDAYQVFEKMTK---KVSVT-----DPGTYGIVIRTLGKGKKTDEALIHLHHAIE-------MGHIPRT------- 405 (479)
Q Consensus 348 ~~~~~~a~~~~~~~~~---~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~~------- 405 (479)
.|++..|.+++....- .+... ....||.|...+.+.|.+..+..+|.++.. .|+.|..
T Consensus 253 ~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~n 332 (696)
T KOG2471|consen 253 HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQN 332 (696)
T ss_pred hcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcc
Confidence 4888888888765432 11111 223467777777788888888888877764 2444422
Q ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc
Q 011714 406 ----ITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQL 453 (479)
Q Consensus 406 ----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 453 (479)
.+||. .-.+...|++-.|.+.|.+...-. ..++..|-.|.++|...
T Consensus 333 ks~eilYNc-G~~~Lh~grPl~AfqCf~~av~vf-h~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 333 KSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHVF-HRNPRLWLRLAECCIMA 382 (696)
T ss_pred cchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHH
Confidence 13333 335678899999999998887653 66889999999888644
No 356
>PRK09687 putative lyase; Provisional
Probab=76.64 E-value=54 Score=29.05 Aligned_cols=233 Identities=10% Similarity=0.035 Sum_probs=135.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh----hhHHHHHHHHHhCCCCCCHHHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDF----FEARKVIDCMFDNGYHPNVTTF 158 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 158 (479)
++.......+.++...|.. .+...+..+.. .+|...-...+.++...|+. .++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 3555556666666666653 33333444433 44666666667777777763 4566666666433 4566666
Q ss_pred HHHHHHHHhcCC-----hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011714 159 TILVNSLCKSGR-----LKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMD 233 (479)
Q Consensus 159 ~~li~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 233 (479)
...+.++...+. ...+.+.+..... .++..+-...+.++.+.++ ++++..+-.+.+. ++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 666666655432 1233444433333 3355666677777777776 4566666666653 35555555566
Q ss_pred HHHccC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChH
Q 011714 234 GFCKVG-RSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIR 312 (479)
Q Consensus 234 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 312 (479)
++.+.+ +...+...+..+.. .++..+-...+.++.+.|+ ..++..+-...+.+ + .....+.++...|+.
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 666553 24456666666664 3466667777888888887 45666665555543 2 234567777888874
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 011714 313 PAVSIFKEMVRFGFEVDERMMNSLLRGL 340 (479)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (479)
+|...+..+.+. .+|..+....+.++
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 677777777754 34555555444443
No 357
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.23 E-value=47 Score=28.17 Aligned_cols=26 Identities=4% Similarity=-0.068 Sum_probs=18.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCC
Q 011714 267 FNGYCKEGTPMKGVGLLKLMKKRNCL 292 (479)
Q Consensus 267 ~~~~~~~g~~~~a~~~~~~~~~~~~~ 292 (479)
...-+..+++.+|+++|+++....+.
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445677888888888888766544
No 358
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=74.18 E-value=61 Score=28.45 Aligned_cols=66 Identities=21% Similarity=0.203 Sum_probs=35.0
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHh----CCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHhhCC
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFD----NGYHPNVTTFTI-LVNSLCKSGRLKEALEVLDQMGRIG 185 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~~ 185 (479)
..++..+...|++.++.+.+.++.++..+ .|.+.|+..... |.-.|....-+++.++..+.|.+.|
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 45666677777777777776666655543 244444332221 2222333333555666666666554
No 359
>PHA02875 ankyrin repeat protein; Provisional
Probab=73.91 E-value=45 Score=31.53 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=32.4
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHhcC
Q 011714 59 DRIKASPLKERIDIFDSIKKDGTNWSVSD--FNDLLMALVMLNEQETAVKFFSEASSYGLAPNSW--TFSIMIRCYCNKN 134 (479)
Q Consensus 59 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~ 134 (479)
..+..|.. ++++.+.+.|..++... ..+.+..++..|+.+- .+.+.+.|..|+.. .....+...+..|
T Consensus 8 ~A~~~g~~----~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGEL----DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCH----HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 34444544 33344444555544322 2334444555566543 23333444333321 1122344444556
Q ss_pred ChhhHHHHH
Q 011714 135 DFFEARKVI 143 (479)
Q Consensus 135 ~~~~a~~~~ 143 (479)
+.+.+..++
T Consensus 80 ~~~~v~~Ll 88 (413)
T PHA02875 80 DVKAVEELL 88 (413)
T ss_pred CHHHHHHHH
Confidence 655443333
No 360
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.03 E-value=7.1 Score=19.84 Aligned_cols=27 Identities=22% Similarity=0.126 Sum_probs=16.8
Q ss_pred hHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 442 SYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
.|..+...+...|++++|...++..++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 345555666666666666666666654
No 361
>PRK09687 putative lyase; Provisional
Probab=72.97 E-value=68 Score=28.44 Aligned_cols=224 Identities=8% Similarity=0.004 Sum_probs=139.9
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 011714 59 DRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQ----ETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKN 134 (479)
Q Consensus 59 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (479)
..+..-+-+++...+..+.+ .++...=...+.++.+.|+. .++...+..+... .++...-...+.++...+
T Consensus 45 ~aL~~~~~~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~ 119 (280)
T PRK09687 45 RVLQLRGGQDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRC 119 (280)
T ss_pred HHHHhcCcchHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhccc
Confidence 33444444455555544433 23555556677777787763 4677777776433 566666666666666554
Q ss_pred Ch-----hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHHH
Q 011714 135 DF-----FEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVG-RVEE 208 (479)
Q Consensus 135 ~~-----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 208 (479)
.- ..+...+..... .++..+-...+.++.+.++ .+++..+-.+.+ .++..+-...+.++.+.+ ..+.
T Consensus 120 ~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~ 192 (280)
T PRK09687 120 KKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPD 192 (280)
T ss_pred ccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHH
Confidence 21 223333333333 3466777778888888877 567777777665 345555566666666653 2456
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011714 209 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKK 288 (479)
Q Consensus 209 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 288 (479)
+...+..+.. .++..+-...+.++.+.++. .+...+-...+.+ + .....+.++...|.. +|+..+..+.+
T Consensus 193 ~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 193 IREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 7777777764 34777788888899999884 5666666665542 2 245678888888985 68888888876
Q ss_pred CCCCCCHhHHHHHHHHHH
Q 011714 289 RNCLPDKISYSTLLNGLL 306 (479)
Q Consensus 289 ~~~~~~~~~~~~l~~~~~ 306 (479)
.. ||...-...+.+|.
T Consensus 263 ~~--~d~~v~~~a~~a~~ 278 (280)
T PRK09687 263 KF--DDNEIITKAIDKLK 278 (280)
T ss_pred hC--CChhHHHHHHHHHh
Confidence 43 36666655555543
No 362
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=72.85 E-value=57 Score=27.51 Aligned_cols=26 Identities=8% Similarity=0.043 Sum_probs=15.1
Q ss_pred HHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 445 MLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
.++....+.|+.++|.+.|.+++..+
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34445555666666666666666553
No 363
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.65 E-value=28 Score=33.67 Aligned_cols=115 Identities=15% Similarity=0.035 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011714 353 DAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMY 432 (479)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 432 (479)
.+-.++..|.. ...|-..+.|...-.+...|+...|.+.+..+......-..+....|.+...+.|-..+|-.++.+..
T Consensus 591 ~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l 669 (886)
T KOG4507|consen 591 IGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQAL 669 (886)
T ss_pred HHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 34444444432 22333334443333344567777777777766543222233344555666666777777777777766
Q ss_pred hCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 433 EHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 433 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
... ...+.++..+++++....+.+.|++.|+.+++.
T Consensus 670 ~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 670 AIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred hhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 654 345566667777777777888888888777764
No 364
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=72.30 E-value=33 Score=24.56 Aligned_cols=58 Identities=19% Similarity=0.319 Sum_probs=33.4
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH
Q 011714 128 RCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQT 192 (479)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 192 (479)
..+.+.|++++|..+.+.+ .-||...|-+|-. .+.|..+++..-+.+|...| .|....
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~ 104 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQT 104 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHH
Confidence 3455667777776666554 2566666665543 35566666666666666655 343333
No 365
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=72.01 E-value=1.3e+02 Score=31.19 Aligned_cols=226 Identities=15% Similarity=0.047 Sum_probs=122.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC----HH---HHHHHHH-HHHccCCHHHHHHHHHHHHHC----CCCCCHhhHHHHHH
Q 011714 201 CYVGRVEEAYEMLMNVKNDGLKPD----VY---TYTAVMD-GFCKVGRSNEAMELLNEAIER----GVTPNVVTFNTLFN 268 (479)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~----~~---~~~~li~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 268 (479)
....++++|..++.++...-..|+ .. .++.+-. .....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 456889999999988765422222 11 2333221 234578899999988877654 22345666777888
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHH-----HHHHHhcCChHHHHH--HHHHHHHc-----CC-CcCHHHHHH
Q 011714 269 GYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTL-----LNGLLKWGKIRPAVS--IFKEMVRF-----GF-EVDERMMNS 335 (479)
Q Consensus 269 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~a~~--~~~~~~~~-----~~-~~~~~~~~~ 335 (479)
+..-.|++++|..+..+..+..-.-+...+... ...+...|+...+.. .+...... .. .+-..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888899999999888777654222233333322 223556674333322 22222111 10 112233344
Q ss_pred HHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC----chHHHH
Q 011714 336 LLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPG--TYGIVIRTLGKGKKTDEALIHLHHAIEMGHIP----RTITFN 409 (479)
Q Consensus 336 l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~ 409 (479)
++.++.+ -.+...++..-+.-.....+.|-.. .+..|+.+....|+.++|...++++......+ +...-.
T Consensus 586 ll~~~~r----~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 586 LLRAWLR----LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHH----HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 4444431 1122233333333333332222222 22367788889999999999999887653333 222222
Q ss_pred HHHH--HHHcCCCHHHHHHHHHH
Q 011714 410 NVIQ--ALCGEGKIDKALLLLFL 430 (479)
Q Consensus 410 ~l~~--~~~~~g~~~~a~~~~~~ 430 (479)
..+. .....|+.+.+.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 2222 23457888887776665
No 366
>PHA02875 ankyrin repeat protein; Provisional
Probab=71.88 E-value=91 Score=29.47 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=32.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHh--HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC
Q 011714 95 LVMLNEQETAVKFFSEASSYGLAPNSWT--FSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVT--TFTILVNSLCKSGR 170 (479)
Q Consensus 95 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~ 170 (479)
.+..|+.+.+..++ +.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+
T Consensus 9 A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 34455554433333 3444444322 233444445555554 333334444433321 11123334445666
Q ss_pred hHHHHHHHH
Q 011714 171 LKEALEVLD 179 (479)
Q Consensus 171 ~~~a~~~~~ 179 (479)
.+.+..+++
T Consensus 81 ~~~v~~Ll~ 89 (413)
T PHA02875 81 VKAVEELLD 89 (413)
T ss_pred HHHHHHHHH
Confidence 655544443
No 367
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=71.84 E-value=1.2e+02 Score=30.69 Aligned_cols=92 Identities=10% Similarity=-0.043 Sum_probs=40.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHhccc
Q 011714 266 LFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFG-FEVDERMMNSLLRGLCMKS 344 (479)
Q Consensus 266 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 344 (479)
....+.-.|+++.|++.+-. ..+...+..++...+..+.-.+-..... ..+.... -.|...-+..++..|.+.
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~- 337 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRS- 337 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHT-
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHH-
Confidence 34555667888888888766 2223344555555444332211111111 2222111 111124466777777763
Q ss_pred chhhccHHHHHHHHHHHHhC
Q 011714 345 WEEKDLLEDAYQVFEKMTKK 364 (479)
Q Consensus 345 ~~~~~~~~~a~~~~~~~~~~ 364 (479)
-+..+...|.+.|-.+...
T Consensus 338 -F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 338 -FEITDPREALQYLYLICLF 356 (613)
T ss_dssp -TTTT-HHHHHHHHHGGGGS
T ss_pred -HhccCHHHHHHHHHHHHHc
Confidence 3567788888888766654
No 368
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.68 E-value=1.4e+02 Score=31.36 Aligned_cols=115 Identities=13% Similarity=0.089 Sum_probs=63.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccc---hhhccHHHHHHH-----HHHHHh--CCCC------
Q 011714 304 GLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSW---EEKDLLEDAYQV-----FEKMTK--KVSV------ 367 (479)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~a~~~-----~~~~~~--~~~~------ 367 (479)
.+......+.+..+++.+....-.++....+.++..|+.... ...+.-+++.+. +..+.+ ....
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~ 679 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLE 679 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhh
Confidence 456677778888888888866555666666666666653321 011122222222 111111 1111
Q ss_pred --CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHc-------------CCCCchHHHHHHHHHHHcC
Q 011714 368 --TDPGTYGIVIRTLGKGKKTDEALIHLHHAIEM-------------GHIPRTITFNNVIQALCGE 418 (479)
Q Consensus 368 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------~~~p~~~~~~~l~~~~~~~ 418 (479)
+....|.-..-.+.+.|+.++|+.++-..+.. ...++...|..++..+...
T Consensus 680 ~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 680 RLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 11233444444556889999998887655441 1233667788888877765
No 369
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.55 E-value=1.2e+02 Score=30.78 Aligned_cols=102 Identities=13% Similarity=0.049 Sum_probs=65.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011714 92 LMALVMLNEQETAVKFFSEASSYGLAP---NSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKS 168 (479)
Q Consensus 92 l~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (479)
+.-+.+.+.+++|+.+-+.... ..| -.......|..+.-.|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 4566677888888877665542 233 3456677888888888999888888888743 667777777777776
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 011714 169 GRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCY 202 (479)
Q Consensus 169 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 202 (479)
++......+ +.......+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 665444333 2222112345567766666655
No 370
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=70.45 E-value=37 Score=25.47 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011714 105 VKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMF 147 (479)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (479)
.+-++.+....+.|++......+++|.+.+++..|.++|+-++
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3344444444455555555555555555555555555555544
No 371
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=70.06 E-value=1.3e+02 Score=30.41 Aligned_cols=185 Identities=16% Similarity=0.167 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHh-cCCCC--CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHH-----hHHHHHHHHHhcCChh
Q 011714 67 KERIDIFDSIKK-DGTNW--SVSDFNDLLMALV-MLNEQETAVKFFSEASSYGLAPNSW-----TFSIMIRCYCNKNDFF 137 (479)
Q Consensus 67 ~~a~~~~~~~~~-~~~~~--~~~~~~~ll~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~ 137 (479)
.-|+..++.+.+ ...+| .+.++-.+...+. ...+++.|...+++.....-.++.. ....++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 456777877774 33333 3345566666666 5889999999999875433223221 2235567777776666
Q ss_pred hHHHHHHHHHhCC----CCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHH--hcCCHH
Q 011714 138 EARKVIDCMFDNG----YHPNVTTFTIL-VNSLCKSGRLKEALEVLDQMGRIG---CKPNIQTYNCLLKGLC--YVGRVE 207 (479)
Q Consensus 138 ~a~~~~~~~~~~~----~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~ 207 (479)
|...+++.++.- ..+-...+..+ +..+...++...|.+.++.+...- ..|-..++..++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 888888876431 11222233333 333334479999999998876532 2444555555555544 445567
Q ss_pred HHHHHHHHHHHCC---------CCCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHH
Q 011714 208 EAYEMLMNVKNDG---------LKPDVYTYTAVMDGFC--KVGRSNEAMELLNEAI 252 (479)
Q Consensus 208 ~a~~~~~~~~~~~---------~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~ 252 (479)
++.+.+..+.... ..|...+|..+++.++ ..|+++.+...++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777663321 1345667777776654 5677666666655543
No 372
>PRK10941 hypothetical protein; Provisional
Probab=69.82 E-value=32 Score=30.13 Aligned_cols=62 Identities=13% Similarity=-0.002 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
.+.+-.+|.+.++++.|+.+.+.+..... .++.-+.--.-.|.+.|.+..|..=++..++..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 34444455666666666666666655321 123334434445566666666666665555543
No 373
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=69.62 E-value=88 Score=28.40 Aligned_cols=80 Identities=8% Similarity=-0.066 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCChHHHHHH
Q 011714 101 QETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCK---SGRLKEALEV 177 (479)
Q Consensus 101 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~ 177 (479)
.+.-+.+++++.+.+ +.+......++..+.+..+.+...+.++++.... +-+...|...+..... .-.++....+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 345677888877774 5667777888888888888888888899888763 3367788887776554 2346666666
Q ss_pred HHHHh
Q 011714 178 LDQMG 182 (479)
Q Consensus 178 ~~~~~ 182 (479)
|.+..
T Consensus 125 y~~~l 129 (321)
T PF08424_consen 125 YEKCL 129 (321)
T ss_pred HHHHH
Confidence 66544
No 374
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=69.17 E-value=38 Score=32.91 Aligned_cols=102 Identities=12% Similarity=-0.033 Sum_probs=75.8
Q ss_pred hhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHH
Q 011714 346 EEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKAL 425 (479)
Q Consensus 346 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 425 (479)
...|+...|...+.......+.-..+....+.....+.|-...|-.++.+.+... ...+.++..+.+++....+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3568888898888876654443344556777888888888899999988877654 335667888889999999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHH
Q 011714 426 LLLFLMYEHAKIPSRTSYDMLITK 449 (479)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~l~~~ 449 (479)
+.|+.+.+.. +.+...-+.|...
T Consensus 697 ~~~~~a~~~~-~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 697 EAFRQALKLT-TKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHhcC-CCChhhHHHHHHH
Confidence 9999999876 3344555555443
No 375
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.29 E-value=55 Score=25.47 Aligned_cols=80 Identities=11% Similarity=0.179 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHhHHHHHHHHHhcCC-hhhHHHHHHHHHhCCCCCCHHHHHHH
Q 011714 88 FNDLLMALVMLNEQETAVKFFSEASSYGL-----APNSWTFSIMIRCYCNKND-FFEARKVIDCMFDNGYHPNVTTFTIL 161 (479)
Q Consensus 88 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (479)
.|.++.-....+++...+.+++.+..... ..+...|..++.+..+..- --.+..+|..+.+.+.+.+..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 46666666666666666666666532110 2233445555555544333 23344555555554455555555555
Q ss_pred HHHHHh
Q 011714 162 VNSLCK 167 (479)
Q Consensus 162 i~~~~~ 167 (479)
|.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 555443
No 376
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=67.33 E-value=27 Score=24.66 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=9.1
Q ss_pred HhccCCHhHHHHHHHHHHh
Q 011714 450 LDQLEKSYDACALYGAALK 468 (479)
Q Consensus 450 ~~~~g~~~~A~~~~~~~~~ 468 (479)
....|++++|...++++++
T Consensus 51 ~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 3444555555555554443
No 377
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=66.21 E-value=93 Score=27.38 Aligned_cols=26 Identities=8% Similarity=0.263 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHH
Q 011714 225 VYTYTAVMDGFCKVGRSNEAMELLNE 250 (479)
Q Consensus 225 ~~~~~~li~~~~~~~~~~~a~~~~~~ 250 (479)
...+..+...|++.++.+.+.+...+
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~ 140 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 33444445555555555554444433
No 378
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=65.97 E-value=58 Score=24.94 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=33.8
Q ss_pred ChhhHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 011714 369 DPGTYGIVIRTLGKGKK---TDEALIHLHHAIEMGHI-PRTITFNNVIQALCGEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (479)
+..+--.+..++.+..+ ..+.+.+++.+.+...+ -+..-...|.-++.+.++++.++++.+.+.+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 33444444555555443 44555666666642111 11222233444666677777777777766665
No 379
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=65.94 E-value=67 Score=27.57 Aligned_cols=56 Identities=11% Similarity=0.082 Sum_probs=26.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHH
Q 011714 196 LLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK-VGRSNEAMELLNEA 251 (479)
Q Consensus 196 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~ 251 (479)
+++.+-..++++++...++++...+...+..-.+.+-.+|-. .|....+++++..+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 444455556666666666666655544454444444444421 23334444444443
No 380
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=63.68 E-value=24 Score=22.63 Aligned_cols=17 Identities=41% Similarity=0.542 Sum_probs=6.1
Q ss_pred HHHHhcCCHHHHHHHHH
Q 011714 198 KGLCYVGRVEEAYEMLM 214 (479)
Q Consensus 198 ~~~~~~~~~~~a~~~~~ 214 (479)
.+|...|++++|.++++
T Consensus 31 ~gllqlg~~~~a~eYi~ 47 (62)
T PF14689_consen 31 YGLLQLGKYEEAKEYIK 47 (62)
T ss_dssp HHHHHTT-HHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHH
Confidence 33333333333333333
No 381
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=63.36 E-value=16 Score=32.09 Aligned_cols=39 Identities=28% Similarity=0.356 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFS 124 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 124 (479)
.-||..|....+.||+++|++++++..+.|+.--..+|-
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 335678888888888888888888888887554444443
No 382
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=62.87 E-value=1.2e+02 Score=27.54 Aligned_cols=79 Identities=4% Similarity=-0.108 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 011714 137 FEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCY---VGRVEEAYEML 213 (479)
Q Consensus 137 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~ 213 (479)
+.-+.++++.++.+ +.+...+..++..+.+..+.++..+-++++.... +-+...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 44566777777664 4567777888888888888888888888888763 3366777777765544 23455666665
Q ss_pred HHHH
Q 011714 214 MNVK 217 (479)
Q Consensus 214 ~~~~ 217 (479)
.+..
T Consensus 126 ~~~l 129 (321)
T PF08424_consen 126 EKCL 129 (321)
T ss_pred HHHH
Confidence 5543
No 383
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=61.85 E-value=1.2e+02 Score=27.00 Aligned_cols=150 Identities=15% Similarity=0.109 Sum_probs=80.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 011714 98 LNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCN----KNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCK----SG 169 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 169 (479)
.+++..+...+......+ +......+...|.. ..+..+|.++|......| .......|...|.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCccc
Confidence 455666666666665533 11333334444433 234666777777666654 33333345555544 33
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----c
Q 011714 170 RLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVG-------RVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK----V 238 (479)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 238 (479)
+..+|..+|++..+.|..+...+...+...|..-. +...|...|.+.-..+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 77788888888877763332222333433333321 2235777777766655 33344444444432 3
Q ss_pred CCHHHHHHHHHHHHHCCC
Q 011714 239 GRSNEAMELLNEAIERGV 256 (479)
Q Consensus 239 ~~~~~a~~~~~~~~~~~~ 256 (479)
.+.++|...|....+.|.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 366777777777777653
No 384
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.66 E-value=22 Score=22.81 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 011714 136 FFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGR 183 (479)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 183 (479)
++...++++.+... ..|-.-.-.+|.++...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444444444432 22444445567777777777777777776653
No 385
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=61.32 E-value=54 Score=25.57 Aligned_cols=46 Identities=17% Similarity=-0.012 Sum_probs=21.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCC
Q 011714 374 GIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEG 419 (479)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 419 (479)
..++..+...++.-.|.++++.+.+.+...+..|....+..+...|
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444555555555555555555555444433333333333333333
No 386
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=61.25 E-value=1.2e+02 Score=26.98 Aligned_cols=43 Identities=21% Similarity=0.214 Sum_probs=22.1
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHH-HHHhcCC-HHHHHHHHHHHH
Q 011714 70 IDIFDSIKKDGTNWSVSDFNDLLM-ALVMLNE-QETAVKFFSEAS 112 (479)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~-~~~A~~~~~~~~ 112 (479)
+.++..+.-.+..|+...++.|.. .+.+.|= ..-|.++|..-.
T Consensus 150 LA~~Tal~l~nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~ 194 (412)
T KOG2297|consen 150 LAMLTALLLSNGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWL 194 (412)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHH
Confidence 444554443334556666666664 3444442 234566666644
No 387
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.01 E-value=5.7 Score=35.36 Aligned_cols=120 Identities=17% Similarity=0.040 Sum_probs=84.1
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCch-HHHHHHHHHHHcCCCHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRT-ITFNNVIQALCGEGKIDKAL 425 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~ 425 (479)
..|.++.|++.|...+..++. ....|..-.+++.+.++...|++=+....+. .||. .-|-.=-.+....|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPP-LAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccCCc-hhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 568888899988888877554 5566777778888999999999888877764 4443 23433344556679999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCC
Q 011714 426 LLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGV 471 (479)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 471 (479)
..+....+.++.+.. =..+=...-..++.++-...+++.++.+.
T Consensus 203 ~dl~~a~kld~dE~~--~a~lKeV~p~a~ki~e~~~k~er~~~e~~ 246 (377)
T KOG1308|consen 203 HDLALACKLDYDEAN--SATLKEVFPNAGKIEEHRRKYERAREERE 246 (377)
T ss_pred HHHHHHHhccccHHH--HHHHHHhccchhhhhhchhHHHHHHHHhc
Confidence 999999888754433 33344455666777777777777666543
No 388
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=60.33 E-value=70 Score=29.97 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=42.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC--C-----CCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 407 TFNNVIQALCGEGKIDKALLLLFLMYEH--A-----KIPSRTSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
+...|++.++-.||+..|+++++.+.-. + ..-...++..++-+|...+++.+|.+.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888888888887755321 1 122446677788888888888888888877653
No 389
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=60.28 E-value=61 Score=26.31 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhCCCCCCh--h-----hHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 011714 351 LEDAYQVFEKMTKKVSVTDP--G-----TYGIVIRTLGKGKKTDEALIHLHHAIEM 399 (479)
Q Consensus 351 ~~~a~~~~~~~~~~~~~~~~--~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 399 (479)
++.|..+|+.+.+....|.. . .-...+..|.+.|.+++|.+++++..+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC
Confidence 56777777777665444311 1 1223456788999999999999887763
No 390
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=60.12 E-value=81 Score=24.61 Aligned_cols=25 Identities=4% Similarity=0.116 Sum_probs=10.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCC
Q 011714 266 LFNGYCKEGTPMKGVGLLKLMKKRN 290 (479)
Q Consensus 266 l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (479)
++..+.+.+++-.|.++++.+.+.+
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~ 50 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEG 50 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 3333333333344444444444433
No 391
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=59.65 E-value=53 Score=27.04 Aligned_cols=35 Identities=17% Similarity=0.047 Sum_probs=28.8
Q ss_pred CCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 401 HIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 401 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
..|++.+|..++.++...|+.++|.+..+++....
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 46788888888888888888888888888887764
No 392
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=59.00 E-value=37 Score=20.38 Aligned_cols=27 Identities=4% Similarity=-0.042 Sum_probs=10.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 011714 98 LNEQETAVKFFSEASSYGLAPNSWTFS 124 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~~~~~~~~~~ 124 (479)
.|-.+++..++++|.+.|+.-+...+.
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHH
Confidence 333334444444444444333333333
No 393
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=58.86 E-value=1.7e+02 Score=27.93 Aligned_cols=126 Identities=10% Similarity=0.142 Sum_probs=85.6
Q ss_pred HHHHHHhcCChhhH-HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 011714 56 RFVDRIKASPLKER-IDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKN 134 (479)
Q Consensus 56 ~~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (479)
.+-..+..|++..| .++++.+.+....|+...+.+. .....|+++.+.+.+....+. +.....+...+++..-..|
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchh
Confidence 34445566776444 4566666655555555444333 455689999999888766542 2455678888999999999
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 011714 135 DFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIG 185 (479)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 185 (479)
++++|..+-+.|....+. +.++........-..|-++++.-.++++...+
T Consensus 372 r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 372 RWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999999999999877654 45544443333445677888988888886554
No 394
>PRK13342 recombination factor protein RarA; Reviewed
Probab=58.81 E-value=1.7e+02 Score=27.82 Aligned_cols=33 Identities=36% Similarity=0.357 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 011714 383 GKKTDEALIHLHHAIEMGHIPRTITFNNVIQAL 415 (479)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 415 (479)
..+.+.|+.++..|.+.|..|....-..++.++
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 355666666666666655555444333333333
No 395
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.34 E-value=57 Score=26.88 Aligned_cols=52 Identities=12% Similarity=0.003 Sum_probs=38.0
Q ss_pred cCCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 417 GEGKIDKALLLLFLMYEH-AKIPSRTSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 417 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
..++.+......+.+.+. ...|++..|..++.++...|+.++|....+++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455544444443333321 2368999999999999999999999999998865
No 396
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=58.14 E-value=88 Score=31.08 Aligned_cols=92 Identities=13% Similarity=0.112 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChh------hHHHHHHHHHhCCCCCCHHHHHH
Q 011714 89 NDLLMALVMLNEQETAVKFFSEASSYG--LAPNSWTFSIMIRCYCNKNDFF------EARKVIDCMFDNGYHPNVTTFTI 160 (479)
Q Consensus 89 ~~ll~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~ 160 (479)
.+|+.+|..+|++..+.++++...... -+.-...+|..|+..++.|.++ .|.+.++... +.-|..||..
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~al 108 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHH
Confidence 389999999999999999999887542 2333567888888888888765 3444444444 3447788888
Q ss_pred HHHHHHhcCChHHHHHHHHHHhh
Q 011714 161 LVNSLCKSGRLKEALEVLDQMGR 183 (479)
Q Consensus 161 li~~~~~~g~~~~a~~~~~~~~~ 183 (479)
|+.+-..--+-.-...++.++..
T Consensus 109 l~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 109 LCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHhhcChHhHHhccHHHHHHHH
Confidence 77765543333333444444443
No 397
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=58.12 E-value=80 Score=23.91 Aligned_cols=81 Identities=12% Similarity=0.062 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHc-----CCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHhccCCHh
Q 011714 384 KKTDEALIHLHHAIEM-----GHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAK-IPSRTSYDMLITKLDQLEKSY 457 (479)
Q Consensus 384 g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 457 (479)
+.......++++.... ....|..-....+ .|+..- +++..+|+.|...++ .--...|......+...|+++
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi-~ya~~~--~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~ 116 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWI-KYADLS--SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFK 116 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHH-HHHTTB--SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHH-HHHHHc--cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHH
Confidence 4444445555554432 2233444333322 333332 389999999998876 445677888889999999999
Q ss_pred HHHHHHHHHH
Q 011714 458 DACALYGAAL 467 (479)
Q Consensus 458 ~A~~~~~~~~ 467 (479)
+|.++|+..+
T Consensus 117 ~A~~I~~~Gi 126 (126)
T PF08311_consen 117 KADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhC
Confidence 9999998754
No 398
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=57.94 E-value=64 Score=22.76 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=26.1
Q ss_pred HHHHHHhcCChhhHHHHHHHH----HhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011714 56 RFVDRIKASPLKERIDIFDSI----KKDGTNWS----VSDFNDLLMALVMLNEQETAVKFFSEAS 112 (479)
Q Consensus 56 ~~~~~~~~~~~~~a~~~~~~~----~~~~~~~~----~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 112 (479)
.++..++.++...|++.+... ...+.... ....-.+.......|++++|+..+++.+
T Consensus 4 ~~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 4 RYLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345566666666664444333 22222210 1111223334444566666666666554
No 399
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.76 E-value=1.6e+02 Score=27.40 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCC
Q 011714 155 VTTFTILVNSLCKSGRLKEALEVLDQMGRIG--CKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND---------GLKP 223 (479)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~ 223 (479)
...+.-+...|..+|+++.|++.|.+...-- .+-.+..|..+|..-.-.|+|.....+..+..+. .+.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 3456778888999999999999998865421 1223455666777777888888877777666543 1233
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 011714 224 DVYTYTAVMDGFCKVGRSNEAMELLNE 250 (479)
Q Consensus 224 ~~~~~~~li~~~~~~~~~~~a~~~~~~ 250 (479)
-...+..+...+.+ +++.|.+.|-.
T Consensus 230 kl~C~agLa~L~lk--kyk~aa~~fL~ 254 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK--KYKSAAKYFLL 254 (466)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHh
Confidence 34444444444333 66666666543
No 400
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=57.66 E-value=1.1e+02 Score=25.21 Aligned_cols=83 Identities=11% Similarity=-0.076 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC--------------CC
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAK--------------IP 438 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------------~~ 438 (479)
|.....+-++.-+.+++-+.+ =..+=.+++..|-+..++.++.++++.|.+..+ .+
T Consensus 110 FceFAetV~k~~q~~e~dK~~----------LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~as 179 (233)
T PF14669_consen 110 FCEFAETVCKDPQNDEVDKTL----------LGRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLAS 179 (233)
T ss_pred HHHHHHHHhcCCccchhhhhh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCc
Confidence 666666655554444433322 112334455667777778888888887776432 23
Q ss_pred CHhhHHHHHHHHhccCCHhHHHHHHHH
Q 011714 439 SRTSYDMLITKLDQLEKSYDACALYGA 465 (479)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 465 (479)
-....+.....+.+.|..+.|+.++++
T Consensus 180 rCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 180 RCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 345567777788899999999988873
No 401
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=57.40 E-value=24 Score=21.81 Aligned_cols=36 Identities=17% Similarity=0.059 Sum_probs=23.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011714 411 VIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLIT 448 (479)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (479)
+.-++.+.|++++|.++.+.+.+. .|+-.....|-.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHHH
Confidence 445677888888888888888875 466666555443
No 402
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.55 E-value=1.7e+02 Score=27.27 Aligned_cols=63 Identities=10% Similarity=0.058 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 011714 191 QTYNCLLKGLCYVGRVEEAYEMLMNVKNDG--LKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIE 253 (479)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 253 (479)
..+.-+...|...|+++.|++.|.+.+..- .+-....|-.+|..-.-.|+|.....+..+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 355666677777777777777777654321 111233444455555556667666666666554
No 403
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.38 E-value=66 Score=22.40 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 011714 70 IDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEA 139 (479)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 139 (479)
-++++.+.+.|+- +....+.+-.+--..|+.+.|.+++..+. +| |+ .|..++.++...|.-+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchhhh
Confidence 3455555555543 44444444443344566666766666666 43 22 455666666655554444
No 404
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=56.25 E-value=1.7e+02 Score=27.27 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhC--CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011714 124 SIMIRCYCNKNDFFEARKVIDCMFDN--GYHPN-VTTFTILVNSLCKSGRLKEALEVLDQM 181 (479)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~ 181 (479)
-.|++.+.-.|+.....+.++.+.+. |..|. ..| --+.-+|.-.|++.+|.+.|-..
T Consensus 239 ~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 239 LGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHH
Confidence 34555555566655555555555432 11111 112 22333444455666666665544
No 405
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=55.81 E-value=1.1e+02 Score=30.38 Aligned_cols=90 Identities=18% Similarity=0.211 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHH------HHHHHHHHHHHCCCCCCHhhHHHH
Q 011714 195 CLLKGLCYVGRVEEAYEMLMNVKND--GLKPDVYTYTAVMDGFCKVGRSN------EAMELLNEAIERGVTPNVVTFNTL 266 (479)
Q Consensus 195 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 266 (479)
+|+.+|...|++-.+.++++.+... |-+.-...+|..|+...+.|.++ .|.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7888888888888888888887654 22223456777788888888653 2333333332 44466777777
Q ss_pred HHHHHhcCChhhHHHHHHHHH
Q 011714 267 FNGYCKEGTPMKGVGLLKLMK 287 (479)
Q Consensus 267 ~~~~~~~g~~~~a~~~~~~~~ 287 (479)
+.+....-+-.-..-++.++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 766554333333333343333
No 406
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.30 E-value=1.8e+02 Score=27.19 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=29.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHh--cCChhhHHHHHHHHHh
Q 011714 94 ALVMLNEQETAVKFFSEASSYGLAPNSW--TFSIMIRCYCN--KNDFFEARKVIDCMFD 148 (479)
Q Consensus 94 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~ 148 (479)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++.+|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344566777777777776654 444433 33444444443 3345566666665554
No 407
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=54.69 E-value=1.4e+02 Score=25.58 Aligned_cols=138 Identities=12% Similarity=0.104 Sum_probs=80.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011714 298 YSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVI 377 (479)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 377 (479)
...-+..|.+.-++..|-....++.+ | .--...+-.|. +..+-.--.++.+-....++.-+.....+++
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIiE----P--IQSRCAiLRys-----klsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii 201 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKIIE----P--IQSRCAILRYS-----KLSDQQILKRLLEVAKAEKVNYTDDGLEAII 201 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhhh----h--HHhhhHhhhhc-----ccCHHHHHHHHHHHHHHhCCCCCcchHHHhh
Confidence 33445556666666555555555442 2 11122222343 3344443444444444444444444555444
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc-CC-----------CCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 011714 378 RTLGKGKKTDEALIHLHHAIEM-GH-----------IPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDM 445 (479)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~~~-~~-----------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 445 (479)
+...|+..+|+..++.-... |. .|.+.....++..|.+ +++++|.+.+.++-+.|+.|. ...+.
T Consensus 202 --fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~-Dii~~ 277 (333)
T KOG0991|consen 202 --FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPE-DIITT 277 (333)
T ss_pred --hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHH-HHHHH
Confidence 55789999999998876533 21 2666677778877765 789999999999999987643 34445
Q ss_pred HHHHH
Q 011714 446 LITKL 450 (479)
Q Consensus 446 l~~~~ 450 (479)
+.+++
T Consensus 278 ~FRv~ 282 (333)
T KOG0991|consen 278 LFRVV 282 (333)
T ss_pred HHHHH
Confidence 55444
No 408
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=54.46 E-value=46 Score=20.00 Aligned_cols=26 Identities=12% Similarity=-0.031 Sum_probs=10.5
Q ss_pred CChhhHHHHHHHHHhCCCCCCHhHHH
Q 011714 274 GTPMKGVGLLKLMKKRNCLPDKISYS 299 (479)
Q Consensus 274 g~~~~a~~~~~~~~~~~~~~~~~~~~ 299 (479)
|-.+++...+++|.+.|+..+...+.
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHH
Confidence 33334444444444444433333333
No 409
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=54.19 E-value=83 Score=22.94 Aligned_cols=80 Identities=16% Similarity=0.126 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011714 99 NEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVL 178 (479)
Q Consensus 99 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 178 (479)
...++|..+.+.+...+ ......--.-+..+.+.|++++|+ ..- .....||...|-+|-. .+.|.-+++...+
T Consensus 20 HcH~EA~tIa~wL~~~~-~~~E~v~lIr~~sLmNrG~Yq~AL---l~~-~~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEG-EMEEVVALIRLSSLMNRGDYQEAL---LLP-QCHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHTT-HHHHH---HHH-TTS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHH---Hhc-ccCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 34556666666665544 122222233334455666666661 111 1122456665555433 4566666666666
Q ss_pred HHHhhCC
Q 011714 179 DQMGRIG 185 (479)
Q Consensus 179 ~~~~~~~ 185 (479)
.++...|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 6666554
No 410
>PRK09857 putative transposase; Provisional
Probab=53.33 E-value=1.1e+02 Score=27.44 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=32.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCC
Q 011714 410 NVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIP 473 (479)
Q Consensus 410 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 473 (479)
.++......++.++-.++++.+.+. .+.......++..-+.+.|.-+++.++..+|+..|+.+
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3333333445555555555555443 22233344455555555565556666666676666653
No 411
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.37 E-value=26 Score=31.42 Aligned_cols=121 Identities=12% Similarity=0.018 Sum_probs=63.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC
Q 011714 304 GLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKG 383 (479)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (479)
-....|.+++|.+.+...++. .|... ++.+--...+.+.+....|++-++.....+.. ....|-.-..+-...
T Consensus 123 eAln~G~~~~ai~~~t~ai~l--np~~a----~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rll 195 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIEL--NPPLA----ILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLL 195 (377)
T ss_pred HHhcCcchhhhhccccccccc--CCchh----hhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHh
Confidence 345677777777777777654 33322 22221111123556666676666666554433 223344444455566
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011714 384 KKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYE 433 (479)
Q Consensus 384 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (479)
|++++|-..++...+.++.+.... .+=...-..+..++-...+++..+
T Consensus 196 g~~e~aa~dl~~a~kld~dE~~~a--~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 196 GNWEEAAHDLALACKLDYDEANSA--TLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred hchHHHHHHHHHHHhccccHHHHH--HHHHhccchhhhhhchhHHHHHHH
Confidence 778888888877777655443332 222333344455554444544443
No 412
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=52.22 E-value=1.5e+02 Score=25.40 Aligned_cols=79 Identities=15% Similarity=0.014 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHH-HHHHHHHHHcCCCHHHHHHHH
Q 011714 350 LLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTIT-FNNVIQALCGEGKIDKALLLL 428 (479)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~ 428 (479)
.++.|...|.+....++. ...-|..-+-++.+..+++.+..--++.++ +.||..- ...+..+......+++|+..+
T Consensus 25 ~y~~ai~~y~raI~~nP~-~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPT-VASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred hhchHHHHHHHHHhcCCC-cchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 344444444444433222 113334444444455555555444444443 2333322 222233344444555555555
Q ss_pred HHH
Q 011714 429 FLM 431 (479)
Q Consensus 429 ~~~ 431 (479)
.+.
T Consensus 102 qra 104 (284)
T KOG4642|consen 102 QRA 104 (284)
T ss_pred HHH
Confidence 544
No 413
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=51.77 E-value=52 Score=20.35 Aligned_cols=35 Identities=11% Similarity=-0.026 Sum_probs=23.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHH
Q 011714 375 IVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNV 411 (479)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 411 (479)
.+.-++.+.|++++|.+..+.+++. .|+..-...|
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHH
Confidence 4556778899999999999998874 5655443333
No 414
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=50.79 E-value=20 Score=27.20 Aligned_cols=31 Identities=23% Similarity=0.537 Sum_probs=18.7
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 011714 237 KVGRSNEAMELLNEAIERGVTPNVVTFNTLFNG 269 (479)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (479)
..|.-.+|..+|..|++.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 344555667777777777666653 5555543
No 415
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=50.41 E-value=93 Score=22.40 Aligned_cols=86 Identities=14% Similarity=0.107 Sum_probs=55.6
Q ss_pred hhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHH
Q 011714 66 LKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDC 145 (479)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 145 (479)
-++|.-+-+.+...+.. ...+--.=+..+...|+|++|..+.+.+. .||...|..|... +.|--+.+..-+..
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce~--rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCEW--RLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHHH--hhccHHHHHHHHHH
Confidence 46777777777654422 22222223456778999999999887763 7888888776554 56777777777777
Q ss_pred HHhCCCCCCHHHHH
Q 011714 146 MFDNGYHPNVTTFT 159 (479)
Q Consensus 146 ~~~~~~~~~~~~~~ 159 (479)
|...| .|....|.
T Consensus 94 la~sg-~p~lq~Fa 106 (115)
T TIGR02508 94 LAASG-DPRLQTFV 106 (115)
T ss_pred HHhCC-CHHHHHHH
Confidence 77766 44444443
No 416
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.18 E-value=38 Score=29.95 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=14.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011714 194 NCLLKGLCYVGRVEEAYEMLMNVKNDGLK 222 (479)
Q Consensus 194 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 222 (479)
+..|....+.|++++|++++++..+.|..
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34455555555555555555555554443
No 417
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.15 E-value=2.2e+02 Score=26.64 Aligned_cols=60 Identities=8% Similarity=0.086 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHhC
Q 011714 54 AQRFVDRIKASPLKERIDIFDSIKKDGTNWSVS--DFNDLLMALVM--LNEQETAVKFFSEASSY 114 (479)
Q Consensus 54 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~--~~~~~~A~~~~~~~~~~ 114 (479)
...+......+++..|.++++.+... ++++.. .+..+..+|.. .-++.+|.+.++.....
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34555667889999999999999876 554444 55666666654 67888999999987754
No 418
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=50.10 E-value=1.8e+02 Score=25.51 Aligned_cols=27 Identities=26% Similarity=0.176 Sum_probs=19.0
Q ss_pred CChhhHHHHHHHHhcCCCHHHHHHHHH
Q 011714 368 TDPGTYGIVIRTLGKGKKTDEALIHLH 394 (479)
Q Consensus 368 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 394 (479)
-++.....+...|.+.|++.+|...|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 366777888888888888888887663
No 419
>PRK13342 recombination factor protein RarA; Reviewed
Probab=49.95 E-value=2.3e+02 Score=26.85 Aligned_cols=22 Identities=14% Similarity=0.028 Sum_probs=15.3
Q ss_pred cCChHHHHHHHHHHHHcCCCcC
Q 011714 308 WGKIRPAVSIFKEMVRFGFEVD 329 (479)
Q Consensus 308 ~~~~~~a~~~~~~~~~~~~~~~ 329 (479)
.++.+.|..++..|++.|..|.
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHH
Confidence 3667777777777777776654
No 420
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=49.52 E-value=2.3e+02 Score=26.59 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNS-WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
+..+...++.. ..||...|+..++.+.... +++. .+ .+...+++++-... ...+-..+-.++
T Consensus 191 ~~~a~~~l~~~--s~GD~R~aLN~LE~~~~~~-~~~~~~~-------------~~~l~~~l~~~~~~-~Dk~gD~hYdli 253 (436)
T COG2256 191 DEEALDYLVRL--SNGDARRALNLLELAALSA-EPDEVLI-------------LELLEEILQRRSAR-FDKDGDAHYDLI 253 (436)
T ss_pred CHHHHHHHHHh--cCchHHHHHHHHHHHHHhc-CCCcccC-------------HHHHHHHHhhhhhc-cCCCcchHHHHH
Confidence 34444444433 2588888887777766543 2332 11 22222233322221 234555666677
Q ss_pred HHHHh---cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 011714 163 NSLCK---SGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVG 204 (479)
Q Consensus 163 ~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 204 (479)
+++.+ -.+++.|+-++-+|.+.|-.|--..-..++-++-..|
T Consensus 254 SA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 254 SALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred HHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 77765 4578999999999999886565555455555444444
No 421
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=49.31 E-value=2.5e+02 Score=28.70 Aligned_cols=209 Identities=13% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH---hHHHHHHHHHHhcCChHHHHHHH
Q 011714 242 NEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDK---ISYSTLLNGLLKWGKIRPAVSIF 318 (479)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~ 318 (479)
....++++...-....-....+-.=+.-....-.-++--.++.+|..+--.|++ .+...++-.|....+++...++.
T Consensus 145 ~R~kq~Lk~vq~~ssah~REkflsD~RkAR~~y~G~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLV 224 (1226)
T KOG4279|consen 145 HRMKQVLKSVQVESSAHSREKFLSDLRKAREIYDGDQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLV 224 (1226)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHH
Q ss_pred HHHHHcC--CCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh---------cCCCHH
Q 011714 319 KEMVRFG--FEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLG---------KGKKTD 387 (479)
Q Consensus 319 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~ 387 (479)
+.+.+.. .+.-........-+++.....+.|+-+.|+.+.-.+.++.....+..|....+.|- ..+..+
T Consensus 225 e~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~ 304 (1226)
T KOG4279|consen 225 EDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLN 304 (1226)
T ss_pred HHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHH
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCC-HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHH
Q 011714 388 EALIHLHHAIEMGHIPRTITFNNVIQALCGEGK-IDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYG 464 (479)
Q Consensus 388 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 464 (479)
.|.++|+++-+ +.|+...=..+...+...|. ++...++-.-..+.+ ..+.+.|..+.-.++|+
T Consensus 305 ~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn------------~LlgrKG~leklq~YWd 368 (1226)
T KOG4279|consen 305 HAIEWYRKAFE--VEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLN------------SLLGRKGALEKLQEYWD 368 (1226)
T ss_pred HHHHHHHHHhc--cCchhhccccHHHHHHHhhhhccchHHHHHHHHHHH------------HHhhccchHHHHHHHHh
No 422
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=48.73 E-value=21 Score=27.06 Aligned_cols=31 Identities=29% Similarity=0.462 Sum_probs=22.1
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 011714 167 KSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKG 199 (479)
Q Consensus 167 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (479)
+.|.-.+|..+|.+|.+.|-+|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 34666778888888888887776 46666654
No 423
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=48.28 E-value=2.1e+02 Score=25.85 Aligned_cols=98 Identities=19% Similarity=0.208 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHh----hCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCH----
Q 011714 155 VTTFTILVNSLCKSGRLKEALEVLDQMG----RIGCKPNIQTYNCLLKGLC-YVGRVEEAYEMLMNVKNDGLKPDV---- 225 (479)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~---- 225 (479)
...+.....-|++-|+.+.|++.+.+.. ..|.+.|+..+..-+..+. ...-..+-++..+.+.+.|...+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 3455566677888888888887776554 3455566555443332222 222233444444455555543332
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 011714 226 YTYTAVMDGFCKVGRSNEAMELLNEAIER 254 (479)
Q Consensus 226 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 254 (479)
.+|..+ .|....++.+|-.+|-+.+..
T Consensus 184 KvY~Gl--y~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 184 KVYQGL--YCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHH--HHHHHHhHHHHHHHHHHHccc
Confidence 233333 234456788888887666543
No 424
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=48.10 E-value=1.3e+02 Score=26.77 Aligned_cols=71 Identities=14% Similarity=0.096 Sum_probs=47.6
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHH----------hcCChHHH
Q 011714 245 MELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLL----------KWGKIRPA 314 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a 314 (479)
.++++.+.+.++.|.-..+..+.-.+.+.=...+++.+|+.+... ..-|..++..|+ -.|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 456666667777777777777777777777777888888877653 333555555554 25777777
Q ss_pred HHHHHH
Q 011714 315 VSIFKE 320 (479)
Q Consensus 315 ~~~~~~ 320 (479)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 666644
No 425
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=47.99 E-value=2.5e+02 Score=26.64 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHh
Q 011714 263 FNTLFNGYCKEGTPMKGVGLLKLMKK 288 (479)
Q Consensus 263 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 288 (479)
...+|+-|...|+..+.++.++.+-.
T Consensus 348 ~~~IIqEYFlsgDt~Evi~~L~DLn~ 373 (645)
T KOG0403|consen 348 LTPIIQEYFLSGDTPEVIRSLRDLNL 373 (645)
T ss_pred hHHHHHHHHhcCChHHHHHHHHHcCC
Confidence 45678888888888888888775543
No 426
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.84 E-value=51 Score=24.14 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011714 262 TFNTLFNGYCKEGTPMKGVGLLKLMKK 288 (479)
Q Consensus 262 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 288 (479)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366777777777777777777776655
No 427
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=47.84 E-value=94 Score=21.67 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=17.2
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 011714 237 KVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPM 277 (479)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 277 (479)
..|+.+.|.+++..+. .| ...|..+++++...|+..
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 3455555555555554 32 123455555555555443
No 428
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=47.82 E-value=2.1e+02 Score=25.62 Aligned_cols=74 Identities=14% Similarity=0.198 Sum_probs=38.0
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHhcCChhhHHHH-HHHHHhCCCCCCHhHHHHHHHHHHh
Q 011714 233 DGFCKVGRSNEAMELLNEAIERGVTPNVV----TFNTLFNGYCKEGTPMKGVGL-LKLMKKRNCLPDKISYSTLLNGLLK 307 (479)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~ 307 (479)
.-..+...+++......+-.+..--|+.. .|..++++---+ +-.++ -++..+ ...+|..|+.+++.
T Consensus 263 ~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWn----Kkeelva~qalr-----hlK~yaPLL~af~s 333 (412)
T KOG2297|consen 263 EQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWN----KKEELVAEQALR-----HLKQYAPLLAAFCS 333 (412)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhc----hHHHHHHHHHHH-----HHHhhhHHHHHHhc
Confidence 33344445566655554433333334443 466666653322 21111 112222 24568888999999
Q ss_pred cCChHHHH
Q 011714 308 WGKIRPAV 315 (479)
Q Consensus 308 ~~~~~~a~ 315 (479)
.|+.+...
T Consensus 334 ~g~sEL~L 341 (412)
T KOG2297|consen 334 QGQSELEL 341 (412)
T ss_pred CChHHHHH
Confidence 88876543
No 429
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=47.57 E-value=1.8e+02 Score=24.96 Aligned_cols=57 Identities=16% Similarity=0.099 Sum_probs=30.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCChhhHHHHHHHH
Q 011714 230 AVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCK-EGTPMKGVGLLKLM 286 (479)
Q Consensus 230 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~ 286 (479)
.++..+-..|+++++...++++...+...+..--+.+..+|-. .|....+++++..+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 3455556667777777777777666555555555555555522 23344444444444
No 430
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=47.54 E-value=65 Score=32.11 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011714 192 TYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAI 252 (479)
Q Consensus 192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 252 (479)
...-++..|.+.|-.+.+.++.+.+-..-. ...-|..-+..+.+.|+...+..+.+.+.
T Consensus 407 ~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 407 DAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444444444444444444332211 12233344444455555544444444433
No 431
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=47.51 E-value=3e+02 Score=28.19 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=49.9
Q ss_pred HHHHHHHHHHH-hCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CC----------CchHHHHHHHHHHHc
Q 011714 352 EDAYQVFEKMT-KKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMG---HI----------PRTITFNNVIQALCG 417 (479)
Q Consensus 352 ~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~----------p~~~~~~~l~~~~~~ 417 (479)
++....+..+. ..+...+......++... .|+...++.+++++...+ +. .+......++.++..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~ 258 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN 258 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc
Confidence 44444444433 455555666666666544 589999999998876543 11 122223444444444
Q ss_pred CCCHHHHHHHHHHHHhCCCC
Q 011714 418 EGKIDKALLLLFLMYEHAKI 437 (479)
Q Consensus 418 ~g~~~~a~~~~~~~~~~~~~ 437 (479)
++...++.+++.+.+.|..
T Consensus 259 -~d~~~al~~l~~L~~~G~d 277 (709)
T PRK08691 259 -QDGAALLAKAQEMAACAVG 277 (709)
T ss_pred -CCHHHHHHHHHHHHHhCCC
Confidence 7788888888888877743
No 432
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.14 E-value=88 Score=27.10 Aligned_cols=21 Identities=24% Similarity=0.093 Sum_probs=9.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHH
Q 011714 376 VIRTLGKGKKTDEALIHLHHA 396 (479)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~ 396 (479)
+...|...|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 334444444444444444444
No 433
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=47.08 E-value=58 Score=21.20 Aligned_cols=49 Identities=16% Similarity=0.090 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCN 132 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (479)
|....++.++...++..-.+.++..+.++.+.| ..+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344556667777776666777777777777666 3455556555555544
No 434
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=47.04 E-value=1.2e+02 Score=22.87 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHhHHHHHHHH
Q 011714 422 DKALLLLFLMYEHAKIP-SRTSYDMLITKLDQLEKSYDACALYGA 465 (479)
Q Consensus 422 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 465 (479)
++...+|..|..+++-. -...|......+...|++.+|.++|+.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 34577888888887643 345577777788888999999888863
No 435
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=47.03 E-value=88 Score=21.63 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=29.6
Q ss_pred cchHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 011714 49 PRSLQAQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVML 98 (479)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 98 (479)
|++.....++..+..+++.++...+..+...|.++ ....+.+...+...
T Consensus 3 p~~~~i~~i~~~~~~~~~~~~~~~~~~l~~~G~s~-~~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 3 PPPEVIEEILESCLNGDFKEARKKLYELLVEGYSA-SDILKQLHEVLVES 51 (89)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--H-HHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHh
Confidence 55667777788887788888887777777666653 33344444444443
No 436
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.89 E-value=3.6e+02 Score=28.16 Aligned_cols=172 Identities=14% Similarity=0.216 Sum_probs=83.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 011714 126 MIRCYCNKNDFFEARKVIDCMFDNGYHPNV--TTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYV 203 (479)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 203 (479)
+=..|...|+++.|.++-+. +|+. .++..-...|...+++..|-++|.++.+ .|..+.--+...
T Consensus 364 vWk~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~ 429 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEI 429 (911)
T ss_pred HHHHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhc
Confidence 33456677777777775432 2232 2334445567778888888888887732 233333334444
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHH-----HHHHHH-ccCCH----HHHHHHHHHHHH---------CCCCCCHhhHH
Q 011714 204 GRVEEAYEMLMNVKNDGLKPDVYTYTA-----VMDGFC-KVGRS----NEAMELLNEAIE---------RGVTPNVVTFN 264 (479)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~-----li~~~~-~~~~~----~~a~~~~~~~~~---------~~~~~~~~~~~ 264 (479)
.+.+ +++.|-.=+-.+++|...+-.. ++..|. +.++. +++..-++.-.+ ....-+.....
T Consensus 430 ~~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nre 508 (911)
T KOG2034|consen 430 NQER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRE 508 (911)
T ss_pred CCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHH
Confidence 5544 3333322222233443322222 222221 22222 222222221111 00011222334
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 011714 265 TLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEM 321 (479)
Q Consensus 265 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (479)
+.-..+...|+.+....+-.-+. -|..++.-+...+.+++|.+++..-
T Consensus 509 tv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 509 TVYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455556666666665444333 2556677777788888887776543
No 437
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.09 E-value=1.9e+02 Score=24.76 Aligned_cols=29 Identities=10% Similarity=0.196 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011714 298 YSTLLNGLLKWGKIRPAVSIFKEMVRFGF 326 (479)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 326 (479)
+.-+...-...+++.+|+.+|+++.+..+
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444566778888888888776543
No 438
>PRK11619 lytic murein transglycosylase; Provisional
Probab=45.93 E-value=3.4e+02 Score=27.64 Aligned_cols=144 Identities=12% Similarity=0.083 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 011714 51 SLQAQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCY 130 (479)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (479)
...+....+.++.++..++..+...+...-. .....|..+...+. ....++....+++-. +.+.....-...+..+
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~L 109 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANP--TLPPARSLQSRFVNEL 109 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCC--CCchHHHHHHHHHHHH
Confidence 4556667777888888887777766642211 12223333322221 223443333333222 1122222333444455
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 011714 131 CNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVG 204 (479)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 204 (479)
.+.+++....+.+.. .+.+...-.....+....|+.++|......+=..| .......+.++..+.+.|
T Consensus 110 a~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 110 ARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcC
Confidence 556666655552211 13455555566666666777666655555543333 223334444554444433
No 439
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=45.26 E-value=2.1e+02 Score=25.02 Aligned_cols=25 Identities=24% Similarity=0.285 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHH
Q 011714 154 NVTTFTILVNSLCKSGRLKEALEVL 178 (479)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~a~~~~ 178 (479)
++.....+...|.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5566666667777777776666555
No 440
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=45.19 E-value=3.1e+02 Score=29.96 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011714 152 HPNVTTFTILVNSLCKSGRLKEALEVL 178 (479)
Q Consensus 152 ~~~~~~~~~li~~~~~~g~~~~a~~~~ 178 (479)
+.....|..|...+-+.|+.++|+..-
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~ 996 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQ 996 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhc
Confidence 334455566666666666666665543
No 441
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=44.94 E-value=2.3e+02 Score=25.32 Aligned_cols=114 Identities=17% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 011714 161 LVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 240 (479)
Q Consensus 161 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 240 (479)
++....+.++..+..+.+..+. ....-...+..+...|++..|++++.+..+ -...+..+--.-.-..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~-----~l~~l~~~~c~~~L~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ-----LLEELKGYSCVRHLSSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----HHHhcccchHHHHHhHH
Q ss_pred HHHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhcCChhhHHHHHHH
Q 011714 241 SNEAMELLNEAIER-----GVTPNVVTFNTLFNGYCKEGTPMKGVGLLKL 285 (479)
Q Consensus 241 ~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 285 (479)
+++-....+++++. -..-|+..|..+..+|.-.|+...+.+-+..
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 442
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=44.81 E-value=1.4e+02 Score=25.92 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=30.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhh----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011714 160 ILVNSLCKSGRLKEALEVLDQMGR----IG-CKPNIQTYNCLLKGLCYVGRVEEAYEMLMNV 216 (479)
Q Consensus 160 ~li~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 216 (479)
.+...|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+..+.+.-++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345556666666666666665532 12 2234444555556666666666655554433
No 443
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=43.98 E-value=49 Score=21.55 Aligned_cols=47 Identities=13% Similarity=0.189 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 011714 154 NVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLC 201 (479)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 201 (479)
....++-++..+++..-.++++..+.+..+.| ..+..+|..-++.++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLA 53 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 34444555555555555555555555555544 234444444444433
No 444
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=43.51 E-value=61 Score=30.69 Aligned_cols=100 Identities=19% Similarity=0.102 Sum_probs=43.2
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 011714 129 CYCNKNDFFEARKVIDCMFDNGYHPNV-TTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVE 207 (479)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 207 (479)
.+...+.++.|..++.+.++. .||- ..|..-..++.+.+++..|+.=+...++.. +--...|.--..++.+.+++.
T Consensus 13 ~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHH
Confidence 334445555566666555553 2332 222222345555555555555554444432 111222222223333334444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011714 208 EAYEMLMNVKNDGLKPDVYTYTAVMD 233 (479)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~li~ 233 (479)
+|+..|+.... +.|+..-....+.
T Consensus 90 ~A~~~l~~~~~--l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 90 KALLDLEKVKK--LAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHHhhh--cCcCcHHHHHHHH
Confidence 45554444443 2444444444333
No 445
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=42.51 E-value=2.9e+02 Score=25.75 Aligned_cols=90 Identities=13% Similarity=0.093 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHH------------HHHHHHcCCCHHHHHHHHHHHHhCCC-CCCH
Q 011714 374 GIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNN------------VIQALCGEGKIDKALLLLFLMYEHAK-IPSR 440 (479)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~------------l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~ 440 (479)
..+...+-..|+.++|..++.+.. ..||.+ -++.|...+|+-.|.-+-+++....+ .|+.
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~ 207 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDV 207 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccH
Confidence 345566778899999998887643 223322 24567778888888888777766544 3443
Q ss_pred -----hhHHHHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 441 -----TSYDMLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 441 -----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
..|+.++......+.+=++.+.|+..-.-|
T Consensus 208 ~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~ 242 (439)
T KOG1498|consen 208 QELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTG 242 (439)
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHhccc
Confidence 357777777778888888888888776543
No 446
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=42.45 E-value=1.6e+02 Score=22.73 Aligned_cols=70 Identities=11% Similarity=0.079 Sum_probs=44.0
Q ss_pred cCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHh-CCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 011714 328 VDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTK-KVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEM 399 (479)
Q Consensus 328 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 399 (479)
++..+-..+..++.+. ....+..+.+.+++.+.+ ..+.......-.+.-++.+.++++.++++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S--~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRS--RDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcc--cchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3334333444444433 355677888888888876 322223344445666788889999999988888774
No 447
>PRK10941 hypothetical protein; Provisional
Probab=42.39 E-value=2.4e+02 Score=24.85 Aligned_cols=57 Identities=16% Similarity=0.035 Sum_probs=28.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 011714 196 LLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIE 253 (479)
Q Consensus 196 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 253 (479)
+-.+|.+.++++.|+++.+.+...... +..-+.--.-.|.+.|.+..|..-++..++
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 444555555555555555555544211 333344444445555555555555555544
No 448
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=41.96 E-value=1.6e+02 Score=24.45 Aligned_cols=28 Identities=11% Similarity=-0.102 Sum_probs=17.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 011714 372 TYGIVIRTLGKGKKTDEALIHLHHAIEM 399 (479)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 399 (479)
..+.++..+...|+++.|-+.|.-++..
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 3556666666667777776666666654
No 449
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.87 E-value=4.1e+02 Score=27.35 Aligned_cols=148 Identities=8% Similarity=0.117 Sum_probs=83.4
Q ss_pred HhcCChhhHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 011714 61 IKASPLKERIDIFDSIKKDGTN-WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEA 139 (479)
Q Consensus 61 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 139 (479)
++.+..++|+++-+.....-.. .....+...|..+.-.|++++|-...-.|.. -+..-|..-+..+...++....
T Consensus 367 l~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 367 LEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccccchh
Confidence 4566778888877665422111 1356778899999999999999988888873 4566666666666666655432
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh-----------------hCCCCCCHHHHHHHHHHHHh
Q 011714 140 RKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMG-----------------RIGCKPNIQTYNCLLKGLCY 202 (479)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-----------------~~~~~~~~~~~~~l~~~~~~ 202 (479)
.. -+.......+..+|..++..+.. .+...-.++..... +.. ..+...-..|+..|..
T Consensus 443 a~---~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~-Se~~~L~e~La~LYl~ 517 (846)
T KOG2066|consen 443 AP---YLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN-SESTALLEVLAHLYLY 517 (846)
T ss_pred hc---cCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh-ccchhHHHHHHHHHHH
Confidence 22 22222222456667777666665 22222222221110 000 1111223346666777
Q ss_pred cCCHHHHHHHHHHHH
Q 011714 203 VGRVEEAYEMLMNVK 217 (479)
Q Consensus 203 ~~~~~~a~~~~~~~~ 217 (479)
.+++..|++++-.++
T Consensus 518 d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 518 DNKYEKALPIYLKLQ 532 (846)
T ss_pred ccChHHHHHHHHhcc
Confidence 777777777665554
No 450
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=41.48 E-value=51 Score=16.86 Aligned_cols=28 Identities=18% Similarity=0.064 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 011714 419 GKIDKALLLLFLMYEHAKIPSRTSYDMLI 447 (479)
Q Consensus 419 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 447 (479)
|+.+.|..+|+++.... +-+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 34556666666666543 23444444443
No 451
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=41.36 E-value=81 Score=23.09 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=21.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011714 372 TYGIVIRTLGKGKKTDEALIHLHHAIE 398 (479)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 398 (479)
-|..++..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377888888888888888888887766
No 452
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=41.20 E-value=6.9e+02 Score=29.80 Aligned_cols=298 Identities=10% Similarity=0.019 Sum_probs=156.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 011714 160 ILVNSLCKSGRLKEALEVLDQMGRIGC--KPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK 237 (479)
Q Consensus 160 ~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 237 (479)
.+..+-.+++.+..|+..++.-..... .-....+..+...|...++++....+...... +... ...|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl-~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSL-YQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccH-HHHHHHHHh
Confidence 444566678899999999988321110 11233444555589999999988888764221 2222 234556678
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHH-HHHHHHhcCChHHHHH
Q 011714 238 VGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYST-LLNGLLKWGKIRPAVS 316 (479)
Q Consensus 238 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~ 316 (479)
.|++..|...|+.+.+.+. +...+++.++......|.++..+...+-..... .+....++. =+.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 8999999999999988742 246677777777777777777776555443321 112222221 1222234444444443
Q ss_pred HHH--------------HHHHcCCCcCHHHH-HH-------HHHHHhcccchhhccHHHHHHHHHHHH---------h--
Q 011714 317 IFK--------------EMVRFGFEVDERMM-NS-------LLRGLCMKSWEEKDLLEDAYQVFEKMT---------K-- 363 (479)
Q Consensus 317 ~~~--------------~~~~~~~~~~~~~~-~~-------l~~~~~~~~~~~~~~~~~a~~~~~~~~---------~-- 363 (479)
.+. .+.... .-|.... .. ++..+...+ ..|.+..+.++.-++. +
T Consensus 1540 ~l~~~n~e~w~~~~~g~~ll~~~-~kD~~~~~~~i~~~r~~~i~~lsa~s--~~~Sy~~~Y~~~~kLH~l~el~~~~~~l 1616 (2382)
T KOG0890|consen 1540 YLSDRNIEYWSVESIGKLLLRNK-KKDEIATLDLIENSRELVIENLSACS--IEGSYVRSYEILMKLHLLLELENSIEEL 1616 (2382)
T ss_pred hhhcccccchhHHHHHHHHHhhc-ccchhhHHHHHHHHHHHhhhhHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 322 011100 0011111 00 000000000 0112112222211110 0
Q ss_pred CCCCC------ChhhHHHHHHHHhcCCCHHHHHHHHHHHH-HcCCCC-----chHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011714 364 KVSVT------DPGTYGIVIRTLGKGKKTDEALIHLHHAI-EMGHIP-----RTITFNNVIQALCGEGKIDKALLLLFLM 431 (479)
Q Consensus 364 ~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 431 (479)
.+..+ +..-|..-+.--....+..+-+--+++.. .....| -..+|....+.+..+|.++.|...+-.+
T Consensus 1617 ~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A 1696 (2382)
T KOG0890|consen 1617 KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNA 1696 (2382)
T ss_pred hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence 00111 11122222222222222222222222222 221122 2356888888888999999999888777
Q ss_pred HhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCC
Q 011714 432 YEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGV 471 (479)
Q Consensus 432 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 471 (479)
.+.+ -+..+-..++-+-..|+-..|+.++++.++..+
T Consensus 1697 ~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1697 KESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 7765 445667777888999999999999999987643
No 453
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.25 E-value=3.7e+02 Score=26.43 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=44.9
Q ss_pred HhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-C------------CchHHHHHHHHHHHcCCCHHHHHHHH
Q 011714 362 TKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGH-I------------PRTITFNNVIQALCGEGKIDKALLLL 428 (479)
Q Consensus 362 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~------------p~~~~~~~l~~~~~~~g~~~~a~~~~ 428 (479)
...+...+......++.. ..|+...|+.+++++...|- . ++......++.++. .|+.+.++.++
T Consensus 192 ~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~~l~~~ 268 (509)
T PRK14958 192 KEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDRLLGCV 268 (509)
T ss_pred HHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 345555555555555444 35889999999988765531 1 12222334444444 47788888888
Q ss_pred HHHHhCCCCC
Q 011714 429 FLMYEHAKIP 438 (479)
Q Consensus 429 ~~~~~~~~~~ 438 (479)
+.+.+.|..+
T Consensus 269 ~~l~~~g~~~ 278 (509)
T PRK14958 269 TRLVEQGVDF 278 (509)
T ss_pred HHHHHcCCCH
Confidence 8888877544
No 454
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=40.09 E-value=1.8e+02 Score=22.72 Aligned_cols=80 Identities=11% Similarity=0.173 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHHCCCCCCHhhHHHH
Q 011714 193 YNCLLKGLCYVGRVEEAYEMLMNVKNDGL-----KPDVYTYTAVMDGFCKVGR-SNEAMELLNEAIERGVTPNVVTFNTL 266 (479)
Q Consensus 193 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 266 (479)
.+.++.-....+++...+.+++.+..... ..+...|.+++.+..+... ---+..+|..+.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34444444445555555555544421100 1133344444444433333 22233444444443444444444444
Q ss_pred HHHHHh
Q 011714 267 FNGYCK 272 (479)
Q Consensus 267 ~~~~~~ 272 (479)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 444433
No 455
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=39.96 E-value=2.5e+02 Score=24.24 Aligned_cols=80 Identities=18% Similarity=0.209 Sum_probs=40.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHH
Q 011714 98 LNEQETAVKFFSEASSYGLAPNS-WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVT-TFTILVNSLCKSGRLKEAL 175 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~ 175 (479)
...++.|+.-|.+.+.. .|+. ..|..-+.++.+..+++.+.+--...++. .||.. ..--+..+......+++|+
T Consensus 23 ~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHH
Confidence 34555666655555543 4444 34455555666666666655544444432 33332 2233334444555566666
Q ss_pred HHHHHH
Q 011714 176 EVLDQM 181 (479)
Q Consensus 176 ~~~~~~ 181 (479)
..+.+.
T Consensus 99 ~~Lqra 104 (284)
T KOG4642|consen 99 KVLQRA 104 (284)
T ss_pred HHHHHH
Confidence 655554
No 456
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=39.81 E-value=2.4e+02 Score=24.01 Aligned_cols=100 Identities=15% Similarity=0.031 Sum_probs=0.0
Q ss_pred CCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-----chHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 011714 364 KVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIP-----RTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIP 438 (479)
Q Consensus 364 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 438 (479)
..+.+...-+|.|+--|.-...+.+|.+.|. .+.|+.| +...-..-|......|+.+.|+.....+.-.-+..
T Consensus 20 ~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa--~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~ 97 (228)
T KOG2659|consen 20 MKVSVMREDLNRLVMNYLVHEGYVEAAEKFA--KESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDT 97 (228)
T ss_pred hccCcchhhHHHHHHHHHHhccHHHHHHHhc--cccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHcc
Q ss_pred CHhhHHHHHHH----HhccCCHhHHHHHHHH
Q 011714 439 SRTSYDMLITK----LDQLEKSYDACALYGA 465 (479)
Q Consensus 439 ~~~~~~~l~~~----~~~~g~~~~A~~~~~~ 465 (479)
|...+-.|... +.+.|..++|+++.+.
T Consensus 98 n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 98 NRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred chhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 457
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=39.63 E-value=2.9e+02 Score=25.01 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHh----CCCCCCHhHHHHHHHHH-HhcCChHHHHHHHHHHHHcCCC
Q 011714 261 VTFNTLFNGYCKEGTPMKGVGLLKLMKK----RNCLPDKISYSTLLNGL-LKWGKIRPAVSIFKEMVRFGFE 327 (479)
Q Consensus 261 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~ 327 (479)
..+-.....||+.|+-+.|++.+++..+ .|.+.|...+..-+..+ ....-..+-.+..+.+.+.|..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgD 176 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGD 176 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 3455556667777777777766665533 34555554443333222 2222233344444445555543
No 458
>PRK09857 putative transposase; Provisional
Probab=39.48 E-value=2.8e+02 Score=24.80 Aligned_cols=28 Identities=14% Similarity=0.180 Sum_probs=14.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011714 195 CLLKGLCYVGRVEEAYEMLMNVKNDGLK 222 (479)
Q Consensus 195 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 222 (479)
++..-+...|.-+++.++..+|...|+.
T Consensus 245 TiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 245 TIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3344444444444555555666555554
No 459
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=39.40 E-value=4.1e+02 Score=26.62 Aligned_cols=200 Identities=12% Similarity=0.082 Sum_probs=102.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
+.+..|..|++.+. .=+.+.-.++++++.. . . ...+..++++....|--.....+.+.+....+. +...-..+.
T Consensus 308 ~~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~-~--~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~-~~ea~~~~~ 381 (574)
T smart00638 308 PAAAKFLRLVRLLR-TLSEEQLEQLWRQLYE-K-K--KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT-PLEAAQLLA 381 (574)
T ss_pred chHHHHHHHHHHHH-hCCHHHHHHHHHHHHh-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC-HHHHHHHHH
Confidence 35556666666664 3445666677777653 1 1 567778888888888777666666666554433 333333333
Q ss_pred HHHHhc-CChHHHHHHHHHHhh-CCCCCC-------HHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCC-CCCHH
Q 011714 163 NSLCKS-GRLKEALEVLDQMGR-IGCKPN-------IQTYNCLLKGLCYVGRV------EEAYEMLMNVKNDGL-KPDVY 226 (479)
Q Consensus 163 ~~~~~~-g~~~~a~~~~~~~~~-~~~~~~-------~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~-~~~~~ 226 (479)
.+..-. .--.+.++.+..+.+ ..+++. ..++..+++-+|..... ++....+.+...... .-|..
T Consensus 382 ~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 461 (574)
T smart00638 382 VLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEE 461 (574)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCch
Confidence 332221 223344444444433 233333 24566777766655432 344444443322211 11333
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc--CChhhHHHHHHHHHhC
Q 011714 227 TYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKE--GTPMKGVGLLKLMKKR 289 (479)
Q Consensus 227 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~ 289 (479)
--...|.++...|....... +...+......+...-...+.++.+. ..++.+..++-.+-..
T Consensus 462 ~~~~~LkaLGN~g~~~~i~~-l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n 525 (574)
T smart00638 462 EIQLYLKALGNAGHPSSIKV-LEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN 525 (574)
T ss_pred heeeHHHhhhccCChhHHHH-HHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC
Confidence 34556777888887554433 33333322223444445555566543 4566666665555433
No 460
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=39.24 E-value=2.9e+02 Score=24.82 Aligned_cols=86 Identities=20% Similarity=0.282 Sum_probs=55.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----------cCCHHHH
Q 011714 140 RKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCY----------VGRVEEA 209 (479)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a 209 (479)
.++|+.+...++.|.-..+.-+.-.+.+.=.+.+++.+++.+.. |..-|..|+..|+. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 46777777778888888877777777777788888888888775 33335555555543 4777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH
Q 011714 210 YEMLMNVKNDGLKPDVYTYTAVMDG 234 (479)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~li~~ 234 (479)
.++++.. ...|....-.+..-
T Consensus 338 mkLLQ~y----p~tdi~~~l~~A~~ 358 (370)
T KOG4567|consen 338 MKLLQNY----PTTDISKMLAVADS 358 (370)
T ss_pred HHHHhcC----CCCCHHHHHHHHHH
Confidence 7766543 23344444444433
No 461
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.92 E-value=3.9e+02 Score=26.26 Aligned_cols=83 Identities=16% Similarity=0.192 Sum_probs=48.5
Q ss_pred HHHHHHHHHHH-HhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCch------------HHHHHHHHHHHc
Q 011714 351 LEDAYQVFEKM-TKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRT------------ITFNNVIQALCG 417 (479)
Q Consensus 351 ~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------------~~~~~l~~~~~~ 417 (479)
.++....+... ...+...+......++.. ..|+...|+..++++...+-..+. .....++.++ .
T Consensus 177 ~~el~~~L~~i~~~egi~i~~~Al~~ia~~--s~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~ 253 (504)
T PRK14963 177 EEEIAGKLRRLLEAEGREAEPEALQLVARL--ADGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-A 253 (504)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-H
Confidence 34444444443 345655555555555544 358888998888887654311111 1233344444 3
Q ss_pred CCCHHHHHHHHHHHHhCCC
Q 011714 418 EGKIDKALLLLFLMYEHAK 436 (479)
Q Consensus 418 ~g~~~~a~~~~~~~~~~~~ 436 (479)
.++.++|+.+++.+...|.
T Consensus 254 ~~d~~~Al~~l~~Ll~~G~ 272 (504)
T PRK14963 254 QGDAAEALSGAAQLYRDGF 272 (504)
T ss_pred cCCHHHHHHHHHHHHHcCC
Confidence 4788888888888887763
No 462
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.58 E-value=2.6e+02 Score=24.17 Aligned_cols=59 Identities=15% Similarity=-0.024 Sum_probs=33.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 376 VIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
+-.++...|++-++++.-.+++... +-+...|-.-..+.+..=+.++|..=|....+..
T Consensus 236 y~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 3344555566666666666665542 2244455555555555666666666666666553
No 463
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=38.20 E-value=94 Score=29.50 Aligned_cols=100 Identities=12% Similarity=0.054 Sum_probs=44.2
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 011714 60 RIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEA 139 (479)
Q Consensus 60 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 139 (479)
.++...++.|+.++....+.+.. .+..|..=..++.+.+++..|+.=+..+++.. +-....|..-..++.+.+.+.+|
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHHHH
Confidence 33445555555555555443322 22222222245555555555555555555432 12223333333444444555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 140 RKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
...|+..... .|+..-....+.
T Consensus 92 ~~~l~~~~~l--~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 92 LLDLEKVKKL--APNDPDATRKID 113 (476)
T ss_pred HHHHHHhhhc--CcCcHHHHHHHH
Confidence 5555554432 344444444443
No 464
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=37.98 E-value=1.6e+02 Score=26.63 Aligned_cols=83 Identities=13% Similarity=0.013 Sum_probs=41.1
Q ss_pred hhccHHHHHHHHHHHHhC-CC--CCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHcCCCHH
Q 011714 347 EKDLLEDAYQVFEKMTKK-VS--VTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPR-TITFNNVIQALCGEGKID 422 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 422 (479)
+..++..|...|.+-... .. ..+...|+.-..+-...|++..|+.=....+.. .|+ ...|..=..++....+++
T Consensus 93 K~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R~Akc~~eLe~~~ 170 (390)
T KOG0551|consen 93 KEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIRGAKCLLELERFA 170 (390)
T ss_pred HhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--CcchhhhhhhhhHHHHHHHHHH
Confidence 345566666666554432 12 223345555555555566666666655555442 332 223333334445555555
Q ss_pred HHHHHHHHH
Q 011714 423 KALLLLFLM 431 (479)
Q Consensus 423 ~a~~~~~~~ 431 (479)
+|....++.
T Consensus 171 ~a~nw~ee~ 179 (390)
T KOG0551|consen 171 EAVNWCEEG 179 (390)
T ss_pred HHHHHHhhh
Confidence 555555544
No 465
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=37.94 E-value=2.9e+02 Score=24.47 Aligned_cols=149 Identities=14% Similarity=0.090 Sum_probs=94.4
Q ss_pred CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCC
Q 011714 64 SPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVM----LNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCN----KND 135 (479)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 135 (479)
.....+...+......+.. .....+...+.. ..+..+|..+|..+...|. ......|...|.. ..+
T Consensus 55 ~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 55 PDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccC
Confidence 4456666666666543322 333444444443 4467889999998777663 3344445555554 448
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cC
Q 011714 136 FFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSG-------RLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCY----VG 204 (479)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 204 (479)
..+|...|+...+.|..+.......+...|.... +...|...|.+....+ +......+...|.. ..
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~ 205 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPR 205 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCc
Confidence 8999999999999885433333444555554431 2347888998888876 44455555555543 34
Q ss_pred CHHHHHHHHHHHHHCCC
Q 011714 205 RVEEAYEMLMNVKNDGL 221 (479)
Q Consensus 205 ~~~~a~~~~~~~~~~~~ 221 (479)
+..+|..+|....+.|.
T Consensus 206 d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 78899999999888764
No 466
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=37.78 E-value=1.6e+02 Score=23.69 Aligned_cols=63 Identities=5% Similarity=-0.022 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 011714 71 DIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKN 134 (479)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (479)
.+-+.+...|...+..-. .++..+...++.-.|.++++.+.+.+...+..|....+..+.+.|
T Consensus 12 ~~~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 12 QAEKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
No 467
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.75 E-value=3.7e+02 Score=28.16 Aligned_cols=176 Identities=14% Similarity=0.054 Sum_probs=98.4
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 011714 168 SGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMEL 247 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 247 (479)
..++++.+.+.+...--| .++|.-+.+.|..+-|+.+.+. ..+- ...+..+|+++.|++.
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD---------~~tR---F~LaLe~gnle~ale~ 665 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKD---------ERTR---FELALECGNLEVALEA 665 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecC---------cchh---eeeehhcCCHHHHHHH
Confidence 355666665554432211 2345555666766666665432 2221 2234567888888776
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 011714 248 LNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFE 327 (479)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 327 (479)
-..+ .+..+|..|.......|+.+-|...|++.+. |..|--.|.-.|+.++..++.+....++
T Consensus 666 akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~-- 728 (1202)
T KOG0292|consen 666 AKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRN-- 728 (1202)
T ss_pred HHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhh--
Confidence 5443 2667888888888888888888888776543 3333344566777777666655554321
Q ss_pred cCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011714 328 VDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIE 398 (479)
Q Consensus 328 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 398 (479)
| .+-......|. |+.++-.+++...... | ..|- .-..+|.-++|.++.++...
T Consensus 729 -D-~~~~~qnalYl-------~dv~ervkIl~n~g~~---~--layl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 729 -D-ATGQFQNALYL-------GDVKERVKILENGGQL---P--LAYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred -h-hHHHHHHHHHh-------ccHHHHHHHHHhcCcc---c--HHHH----HHhhcCcHHHHHHHHHhhcc
Confidence 1 11112222232 6777766666543321 1 1221 12345777778887777654
No 468
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=37.02 E-value=1.5e+02 Score=20.83 Aligned_cols=27 Identities=22% Similarity=0.122 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEAS 112 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~ 112 (479)
..-..+...+...|+++.|++.+-++.
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333334444444444444444444433
No 469
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=36.68 E-value=4.2e+02 Score=26.03 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=50.7
Q ss_pred HHHHHHHHHHH-HhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC------CC----------CchHHHHHHHH
Q 011714 351 LEDAYQVFEKM-TKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMG------HI----------PRTITFNNVIQ 413 (479)
Q Consensus 351 ~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~----------p~~~~~~~l~~ 413 (479)
.++....+... ...+...+......++.. ..|+...|+..++++...+ +. .+......++.
T Consensus 189 ~~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ 266 (507)
T PRK06645 189 FEEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVE 266 (507)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHH
Confidence 34444455443 345555566666655553 4689999999999875432 11 12222334444
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCC
Q 011714 414 ALCGEGKIDKALLLLFLMYEHAKI 437 (479)
Q Consensus 414 ~~~~~g~~~~a~~~~~~~~~~~~~ 437 (479)
+.. .|+.+.|+.+++.+...|..
T Consensus 267 ai~-~~d~~~Al~~l~~L~~~g~~ 289 (507)
T PRK06645 267 YII-HRETEKAINLINKLYGSSVN 289 (507)
T ss_pred HHH-cCCHHHHHHHHHHHHHcCCC
Confidence 444 48888888888888888744
No 470
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=36.64 E-value=80 Score=21.30 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=15.6
Q ss_pred cCCCHHHHHHHHHHHHhCC
Q 011714 417 GEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 417 ~~g~~~~a~~~~~~~~~~~ 435 (479)
..|++++|++++...++..
T Consensus 18 ~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 18 EKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HhhhHHHHHHHHHHHHHHH
Confidence 6789999999998887753
No 471
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.51 E-value=4.1e+02 Score=25.84 Aligned_cols=45 Identities=13% Similarity=0.026 Sum_probs=27.2
Q ss_pred HHHHHHHHHHH-hCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011714 352 EDAYQVFEKMT-KKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIE 398 (479)
Q Consensus 352 ~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 398 (479)
++....++.+. ..+...+......++. ...|+...|+.+++++..
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~ 228 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIV 228 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHH
Confidence 33444444443 3455555555554443 356899999999988654
No 472
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=35.76 E-value=1.5e+02 Score=20.61 Aligned_cols=48 Identities=13% Similarity=0.193 Sum_probs=37.6
Q ss_pred ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011714 65 PLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASS 113 (479)
Q Consensus 65 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 113 (479)
..++. ++|+-....|+..|+..|..++..+.-+=-++...++++.|..
T Consensus 24 s~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 24 SAEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred CHHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 33443 7888888888888999998888888777777777888887764
No 473
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=34.91 E-value=3.8e+02 Score=24.92 Aligned_cols=113 Identities=14% Similarity=0.111 Sum_probs=70.8
Q ss_pred CHhHHHHH---HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhC------
Q 011714 294 DKISYSTL---LNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKK------ 364 (479)
Q Consensus 294 ~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~------ 364 (479)
|...|.++ +..+.+.|-+..|.++.+-+...+..-|.......|+.++. +.++++--+++.+.....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~AL----rs~~y~~Li~~~~~~~~~~~~~~~ 174 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYAL----RSRQYQWLIDFSESPLAKCYRNWL 174 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHH----hcCCHHHHHHHHHhHhhhhhhhhh
Confidence 34444443 45677889999999999998887766677777778888874 567888778777765541
Q ss_pred CCCCChhhHHHHHHHHhcCCC--------------HHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 011714 365 VSVTDPGTYGIVIRTLGKGKK--------------TDEALIHLHHAIEMGHIPRTITFNNVIQAL 415 (479)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 415 (479)
...|+ ..|+..+..+...+. .++|.+.+.++... =+.+...|+..+
T Consensus 175 ~~lPn-~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~----fP~vl~~Ll~~l 234 (360)
T PF04910_consen 175 SLLPN-FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR----FPWVLVPLLDKL 234 (360)
T ss_pred hhCcc-HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH----hHHHHHHHHHHh
Confidence 11232 445555544443333 27777777776653 223445555544
No 474
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=34.43 E-value=1.9e+02 Score=21.32 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=14.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 011714 92 LMALVMLNEQETAVKFFSEASSYG 115 (479)
Q Consensus 92 l~~~~~~~~~~~A~~~~~~~~~~~ 115 (479)
+..+.++...++|+++.+.|.++|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 444555566666666666666665
No 475
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=34.39 E-value=1.9e+02 Score=21.24 Aligned_cols=80 Identities=11% Similarity=0.011 Sum_probs=50.9
Q ss_pred CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 011714 64 SPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVI 143 (479)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (479)
...++|..+.+.+...+.. ...+--.-+..+.+.|+|++| +..-.. ...||...|..|.. .+.|--+++...+
T Consensus 20 HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~-~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA---LLLPQC-HCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH---HHHHTT-S--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH---HHhccc-CCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 3468999999999877653 333334445678889999999 222222 23677777766544 4788888888888
Q ss_pred HHHHhCC
Q 011714 144 DCMFDNG 150 (479)
Q Consensus 144 ~~~~~~~ 150 (479)
.++...|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 8887665
No 476
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=34.31 E-value=1.4e+02 Score=21.87 Aligned_cols=23 Identities=4% Similarity=0.052 Sum_probs=9.2
Q ss_pred ChhhHHHHHHHHHhCCCCCCHhH
Q 011714 275 TPMKGVGLLKLMKKRNCLPDKIS 297 (479)
Q Consensus 275 ~~~~a~~~~~~~~~~~~~~~~~~ 297 (479)
.+-.|.++++.+.+.+...+..|
T Consensus 15 ~~~sa~ei~~~l~~~~~~i~~~T 37 (116)
T cd07153 15 GHLTAEEIYERLRKKGPSISLAT 37 (116)
T ss_pred CCCCHHHHHHHHHhcCCCCCHHH
Confidence 33344444444444433333333
No 477
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=34.26 E-value=92 Score=17.65 Aligned_cols=28 Identities=29% Similarity=0.186 Sum_probs=21.5
Q ss_pred hhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 441 TSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
.+|..|+..-...++++.|.+-|+++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3567777777888888888888887765
No 478
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=34.08 E-value=1e+02 Score=22.68 Aligned_cols=37 Identities=11% Similarity=-0.010 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 011714 99 NEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKND 135 (479)
Q Consensus 99 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (479)
+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3333444455555444434444444444444444443
No 479
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=33.77 E-value=3.1e+02 Score=23.60 Aligned_cols=70 Identities=13% Similarity=0.158 Sum_probs=44.8
Q ss_pred hhccHHHHHHHHHHHHh------------CCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTK------------KVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQA 414 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 414 (479)
..|+..+|+..++.-.. --..|.+.....++..|. .+++++|.++++++-+.|+.|.. ..+.+.++
T Consensus 204 a~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv 281 (333)
T KOG0991|consen 204 AQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED-IITTLFRV 281 (333)
T ss_pred ccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHHH
Confidence 34666666666554321 112355666666776654 47899999999999999988654 35556666
Q ss_pred HHcC
Q 011714 415 LCGE 418 (479)
Q Consensus 415 ~~~~ 418 (479)
+-..
T Consensus 282 ~K~~ 285 (333)
T KOG0991|consen 282 VKNM 285 (333)
T ss_pred HHhc
Confidence 5443
No 480
>PF13934 ELYS: Nuclear pore complex assembly
Probab=33.77 E-value=3e+02 Score=23.46 Aligned_cols=55 Identities=13% Similarity=0.043 Sum_probs=25.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011714 375 IVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMY 432 (479)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 432 (479)
-++.++...|+.+.|+.+++..... ..+......++.+ ..++.+.+|..+.+...
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA-LANGLVTEAFSFQRSYP 167 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-HHcCCHHHHHHHHHhCc
Confidence 3555555566666666666543211 1122222222223 44466666665554443
No 481
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=32.92 E-value=6.6e+02 Score=27.12 Aligned_cols=198 Identities=17% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHh-hCC--CCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHH---
Q 011714 160 ILVNSLCKSGRLKEALEVLDQMG-RIG--CKPNIQTYNCLLKGLCYV-GRVEEAYEMLMNVKNDGLKPDVYTYTAVM--- 232 (479)
Q Consensus 160 ~li~~~~~~g~~~~a~~~~~~~~-~~~--~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li--- 232 (479)
..++-+...+++.+|..+.++-+ ..+ +.-++..|-.=+..+.++ ++.+-.-.++..+.+.++ +...|....
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDv--t~tmY~~~~~~~ 776 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDV--TKTMYKDTYPPS 776 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccc--cccccccccccc
Q ss_pred ---------HHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC--ChhhHHHHHHHHHhCCCCCCHhHHHHH
Q 011714 233 ---------DGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEG--TPMKGVGLLKLMKKRNCLPDKISYSTL 301 (479)
Q Consensus 233 ---------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l 301 (479)
......++.....+.+...++. ..........++.+|++.+ ++++|+.++.++.+.
T Consensus 777 ~~~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~------------ 843 (928)
T PF04762_consen 777 SEAQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE------------ 843 (928)
T ss_pred cccccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc------------
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 011714 302 LNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLG 381 (479)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (479)
+...|.+.++.+.=. ..-...|+..+..| +++.|+-+-++-.+ |+.=|--.++-+-
T Consensus 844 --------~~~~ae~alkyl~fL--vDvn~Ly~~ALG~Y---------Dl~Lal~VAq~SQk-----DPKEYLPfL~~L~ 899 (928)
T PF04762_consen 844 --------DPESAEEALKYLCFL--VDVNKLYDVALGTY---------DLELALMVAQQSQK-----DPKEYLPFLQELQ 899 (928)
T ss_pred --------ChHHHHHHHhHheee--ccHHHHHHHHhhhc---------CHHHHHHHHHHhcc-----ChHHHHHHHHHHH
Q ss_pred -------------cCCCHHHHHHHHHHH
Q 011714 382 -------------KGKKTDEALIHLHHA 396 (479)
Q Consensus 382 -------------~~g~~~~A~~~~~~~ 396 (479)
..|++++|++.+.++
T Consensus 900 ~l~~~~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 900 KLPPLYRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred hCChhheeeeHhhhhCCHHHHHHHHHhh
No 482
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.83 E-value=5.3e+02 Score=26.00 Aligned_cols=86 Identities=15% Similarity=0.093 Sum_probs=58.4
Q ss_pred hhccHHHHHHHHHHHHhCCCC---CC--hhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSV---TD--PGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKI 421 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 421 (479)
+..++..+.+.|..-...-+. .+ ......|-.+|....+.+.|.++++++.+.... ++.+--.+..+....|.-
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhcch
Confidence 557777888777754432111 01 134567777888889999999999998875322 444555566777888888
Q ss_pred HHHHHHHHHHHh
Q 011714 422 DKALLLLFLMYE 433 (479)
Q Consensus 422 ~~a~~~~~~~~~ 433 (479)
++|+........
T Consensus 445 e~AL~~~~~~~s 456 (872)
T KOG4814|consen 445 EEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHHh
Confidence 999888776553
No 483
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=32.82 E-value=2e+02 Score=21.18 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=15.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCC
Q 011714 161 LVNSLCKSGRLKEALEVLDQMGRIG 185 (479)
Q Consensus 161 li~~~~~~g~~~~a~~~~~~~~~~~ 185 (479)
+++.+-+|...++|+++++-|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3444556666677777777776665
No 484
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=32.79 E-value=1.9e+02 Score=20.98 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=12.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHH
Q 011714 265 TLFNGYCKEGTPMKGVGLLKLM 286 (479)
Q Consensus 265 ~l~~~~~~~g~~~~a~~~~~~~ 286 (479)
.++.-|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 4455556666666666666554
No 485
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=32.27 E-value=1.1e+02 Score=20.59 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011714 54 AQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMAL 95 (479)
Q Consensus 54 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 95 (479)
...+.+.+-.++.+.+.++++.....|..+.....+.+.-+.
T Consensus 5 ~~~l~~al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m 46 (79)
T PF02607_consen 5 IERLLDALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAM 46 (79)
T ss_dssp HHHHHHHHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 445566666666666666666666555554443333344333
No 486
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=32.20 E-value=4.8e+02 Score=25.34 Aligned_cols=94 Identities=10% Similarity=-0.067 Sum_probs=72.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH--HcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQAL--CGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKL 450 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (479)
-+.++..+.+.|-.++|...+..+... .+|+...|..+++.= ...-+...+..+++.|..... .++..|...+..-
T Consensus 463 ~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg-~d~~lw~~y~~~e 540 (568)
T KOG2396|consen 463 KSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG-ADSDLWMDYMKEE 540 (568)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC-CChHHHHHHHHhh
Confidence 456778888899999999999998876 456777787777532 222337888999999887643 6888888888777
Q ss_pred hccCCHhHHHHHHHHHHh
Q 011714 451 DQLEKSYDACALYGAALK 468 (479)
Q Consensus 451 ~~~g~~~~A~~~~~~~~~ 468 (479)
...|..+.+-.++-++++
T Consensus 541 ~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 541 LPLGRPENCGQIYWRAMK 558 (568)
T ss_pred ccCCCcccccHHHHHHHH
Confidence 789999998888888766
No 487
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=31.94 E-value=3e+02 Score=22.90 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCCh
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSW-TFSIMIRCYCNKNDF 136 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~ 136 (479)
....+.++..+...|+++.|-+.|.-+.+.. +.|.. .|..=+..+.+.+.-
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~ 92 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQ 92 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCc
Confidence 3456788899999999999999999888654 34432 344444444444433
No 488
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=31.81 E-value=3.9e+02 Score=24.21 Aligned_cols=141 Identities=16% Similarity=0.182 Sum_probs=74.0
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHH
Q 011714 62 KASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARK 141 (479)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 141 (479)
+..+..+.++.-....+-+.. -...| ++-+--..--..+|.++|++..+.| ..+|+. -+.+...|.
T Consensus 196 RERnp~~RI~~A~~ALeIN~e-CA~Ay--vLLAEEEa~Ti~~AE~l~k~ALka~----e~~yr~-sqq~qh~~~------ 261 (556)
T KOG3807|consen 196 RERNPPARIKAAYQALEINNE-CATAY--VLLAEEEATTIVDAERLFKQALKAG----ETIYRQ-SQQCQHQSP------ 261 (556)
T ss_pred HhcCcHHHHHHHHHHHhcCch-hhhHH--HhhhhhhhhhHHHHHHHHHHHHHHH----HHHHhh-HHHHhhhcc------
Confidence 445555555555554443322 12222 2222233445678888888887643 223331 111222222
Q ss_pred HHHHHHhCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011714 142 VIDCMFDNGYHPNVTTF--TILVNSLCKSGRLKEALEVLDQMGRIGCKPNI---QTYNCLLKGLCYVGRVEEAYEMLMNV 216 (479)
Q Consensus 142 ~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~ 216 (479)
..+.+.+++ .++.+| ..|..+.-+.|+..+|.+.|+.+.+. .|-. .....++.++....-+.++..++.+.
T Consensus 262 ~~da~~rRD--tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 262 QHEAQLRRD--TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred chhhhhhcc--cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 223333432 344444 44555556788888888888887654 2322 23345777887777777777777666
Q ss_pred HHCC
Q 011714 217 KNDG 220 (479)
Q Consensus 217 ~~~~ 220 (479)
.+..
T Consensus 338 Ddis 341 (556)
T KOG3807|consen 338 DDIS 341 (556)
T ss_pred cccc
Confidence 5543
No 489
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=31.78 E-value=1.4e+02 Score=22.19 Aligned_cols=31 Identities=3% Similarity=0.008 Sum_probs=12.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHh
Q 011714 266 LFNGYCKEGTPMKGVGLLKLMKKRNCLPDKI 296 (479)
Q Consensus 266 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 296 (479)
++..+...+.+-.|.++++.+.+.+...+..
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~ 43 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLA 43 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HH
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHH
Confidence 3334444444444455555554444443433
No 490
>PRK14700 recombination factor protein RarA; Provisional
Probab=31.71 E-value=3.8e+02 Score=24.02 Aligned_cols=191 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHHH-----HhcCChhhHHHHHHHHHh-------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011714 47 ENPRSLQAQRFVDR-----IKASPLKERIDIFDSIKK-------DGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSY 114 (479)
Q Consensus 47 ~~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 114 (479)
++|.......++.+ ++.-..++-..+++.... ..+..+......++..+ .||...|+..++.+...
T Consensus 17 ENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a--~GDaR~aLN~LE~a~~~ 94 (300)
T PRK14700 17 ENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYN--EGDCRKILNLLERMFLI 94 (300)
T ss_pred CCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhc--CCHHHHHHHHHHHHHhh
Q ss_pred CCCCCH--HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHhhCCCCCC
Q 011714 115 GLAPNS--WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKS---GRLKEALEVLDQMGRIGCKPN 189 (479)
Q Consensus 115 ~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~ 189 (479)
....+. .+...+-....+. ......+...+-.+++++.+. .+.+.|+-++.+|.+.|-.|.
T Consensus 95 ~~~~~~~~it~~~~~~~~~~~--------------~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~ 160 (300)
T PRK14700 95 STRGDEIYLNKELFDQAVGET--------------SRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPL 160 (300)
T ss_pred ccccCCCccCHHHHHHHHhHH--------------HhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHH
Q ss_pred HHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 011714 190 IQTYNCLLKGLCYVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIE 253 (479)
Q Consensus 190 ~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 253 (479)
...-..++-++-..| -...|...++.....|.+--.......+-.++..-+...+...+..+.+
T Consensus 161 ~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~La~aviyLA~aPKSNs~y~A~~~A~~ 229 (300)
T PRK14700 161 VIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAPKSNACYKALAQAQQ 229 (300)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
No 491
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=31.00 E-value=1.3e+02 Score=20.56 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=9.3
Q ss_pred HHHHHHHHhCCCCCCCC
Q 011714 460 CALYGAALKQGVIPQRK 476 (479)
Q Consensus 460 ~~~~~~~~~~~~~p~~~ 476 (479)
.++++.+++.|..++.+
T Consensus 72 ~~~~~~Ll~~g~~~~~~ 88 (89)
T PF12796_consen 72 LEIVKLLLEHGADVNIR 88 (89)
T ss_dssp HHHHHHHHHTTT-TTSS
T ss_pred HHHHHHHHHcCCCCCCc
Confidence 34556666666666543
No 492
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=30.58 E-value=2.1e+02 Score=20.76 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=9.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 011714 91 LLMALVMLNEQETAVKFFSEA 111 (479)
Q Consensus 91 ll~~~~~~~~~~~A~~~~~~~ 111 (479)
++.-|...|+.++|..-+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444444445555555555443
No 493
>PRK09462 fur ferric uptake regulator; Provisional
Probab=30.41 E-value=2.6e+02 Score=21.76 Aligned_cols=64 Identities=14% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 011714 176 EVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 239 (479)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 239 (479)
.+-+.+.+.|++.+..-...+-......+..-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 3 ~~~~~l~~~glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 3 DNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred hHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 494
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=30.20 E-value=4.5e+02 Score=24.41 Aligned_cols=56 Identities=11% Similarity=0.064 Sum_probs=33.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHH
Q 011714 197 LKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFC-KVGRSNEAMELLNEAI 252 (479)
Q Consensus 197 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~ 252 (479)
+..+.+.|-+..|+++.+-+...+..-|+.....+|+.|+ +.++++-.+++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 4455666777777777777766654445555555566554 4555555555555543
No 495
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=30.03 E-value=4.3e+02 Score=24.13 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHH------hcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCC
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTL------GKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGK 420 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 420 (479)
..+.++++..++++....+. |.+......|.++ ...-+|.....+|+-+.. +.|++++-..=.-+.....-
T Consensus 268 ~r~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAVAla~~~G 344 (415)
T COG4941 268 DRALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAVALAMREG 344 (415)
T ss_pred hHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 421 IDKALLLLFLMYEH-AKIPSRTSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 421 ~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
++.++...+-+.+. ...--...+..-...+.+.|+.++|...|+.++.
T Consensus 345 p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 345 PAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred HHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH
No 496
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=29.97 E-value=4.4e+02 Score=24.18 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchH----HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 011714 372 TYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTI----TFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLI 447 (479)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 447 (479)
++.--+...-..--.++.+.++..++.. .|+.. -|.+++......|.+++.+.+|++++..|-.|-...-..++
T Consensus 105 tlsECl~Li~eGcp~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~ 182 (353)
T PF15297_consen 105 TLSECLNLIEEGCPKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLV 182 (353)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHH
Q ss_pred HHH
Q 011714 448 TKL 450 (479)
Q Consensus 448 ~~~ 450 (479)
+.+
T Consensus 183 diL 185 (353)
T PF15297_consen 183 DIL 185 (353)
T ss_pred HHH
No 497
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=29.92 E-value=91 Score=23.18 Aligned_cols=33 Identities=12% Similarity=-0.003 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 011714 101 QETAVKFFSEASSYGLAPNSWTFSIMIRCYCNK 133 (479)
Q Consensus 101 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (479)
.-.|.++++.+.+.+...+..|...-+..+.+.
T Consensus 23 ~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 55 (120)
T PF01475_consen 23 HLTAEEIYDKLRKKGPRISLATVYRTLDLLEEA 55 (120)
T ss_dssp SEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHC
Confidence 334444444444444334444333333333333
No 498
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=29.67 E-value=6.6e+02 Score=26.17 Aligned_cols=199 Identities=12% Similarity=0.070 Sum_probs=111.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH---HhcCChhhHHHHHHHHHhCCCCCCHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCY---CNKNDFFEARKVIDCMFDNGYHPNVTTFTI 160 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (479)
+...+..||..+.+.|++++....-.+|.+.- +.++..|..-+... ...++..++..+|++.+..-. ++..|.-
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~--~v~iw~e 188 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN--SVPIWEE 188 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc--cchHHHH
Confidence 56777889999999999988877777777653 55666776655433 344677778888887775432 3444443
Q ss_pred HHHHHH-------hcCChHHHHHHHHHHhhC-C--CCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 011714 161 LVNSLC-------KSGRLKEALEVLDQMGRI-G--CKPNIQTYNCLL---KGLCYVGRVEEAYEMLMNVKNDGLKPDVYT 227 (479)
Q Consensus 161 li~~~~-------~~g~~~~a~~~~~~~~~~-~--~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (479)
.+..+. +.++++....+|.+.... | +.-....|.... ..|...-..++...++..-...+ .|..+
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~--~D~~~ 266 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP--LDEDT 266 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc--chhhh
Confidence 333332 346678888888877642 2 122223333332 34444555566777776665544 23332
Q ss_pred HHHHHHHHHc-------cCCHHHHHHH-------HHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011714 228 YTAVMDGFCK-------VGRSNEAMEL-------LNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKK 288 (479)
Q Consensus 228 ~~~li~~~~~-------~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 288 (479)
-+.-..-..+ ..+++.+.+- +++.... ..+-...|-.++..+...|.+-....+++++..
T Consensus 267 ~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~ 340 (881)
T KOG0128|consen 267 RGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVA 340 (881)
T ss_pred hHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 2221111111 1223333222 2222222 223345677788888888888776666666543
No 499
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=29.23 E-value=6.9e+02 Score=26.20 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=25.6
Q ss_pred hhHHHHHHHHH-hCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 277 MKGVGLLKLMK-KRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 277 ~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
++..+.++.+. ..|+..+......+++ ...|+...++.++++...
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia 226 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHH
Confidence 44555555543 3455555555555443 346778778777766553
No 500
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=29.01 E-value=1.6e+02 Score=18.88 Aligned_cols=47 Identities=13% Similarity=0.030 Sum_probs=21.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH-----HhcCChhhHHHH
Q 011714 96 VMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCY-----CNKNDFFEARKV 142 (479)
Q Consensus 96 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~ 142 (479)
...|++=+|-++++.+=.....+....+..+|... .+.|+...|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34555666666666554322123344444444432 244555555544
Done!