Query 011714
Match_columns 479
No_of_seqs 683 out of 2633
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 13:51:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011714.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011714hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.8E-35 1.3E-39 289.7 43.8 396 60-470 94-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3E-33 1E-37 276.1 42.0 375 82-470 81-546 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.4E-28 8.3E-33 227.6 48.1 381 59-455 8-388 (388)
4 4g26_A Pentatricopeptide repea 100.0 8.9E-32 3E-36 254.9 24.9 205 69-273 9-223 (501)
5 4g26_A Pentatricopeptide repea 100.0 9.9E-32 3.4E-36 254.6 24.7 207 102-308 7-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 2.8E-28 9.6E-33 227.2 45.2 364 91-469 5-368 (388)
7 2gw1_A Mitochondrial precursor 100.0 1.8E-24 6.2E-29 209.2 39.4 398 58-470 14-479 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 8.2E-24 2.8E-28 201.1 40.4 363 83-459 24-444 (450)
9 2gw1_A Mitochondrial precursor 99.9 3.4E-23 1.2E-27 200.3 39.7 364 59-435 48-479 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 6.6E-23 2.3E-27 194.8 40.3 355 104-475 11-414 (450)
11 3fp2_A TPR repeat-containing p 99.9 5.8E-22 2E-26 192.8 38.5 394 58-470 33-492 (537)
12 3fp2_A TPR repeat-containing p 99.9 2.8E-20 9.7E-25 180.8 40.1 358 60-435 69-492 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 6.2E-20 2.1E-24 168.6 38.1 334 84-454 2-354 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 1.2E-19 4.1E-24 166.7 39.1 317 119-470 2-336 (359)
15 2xm6_A Protein corresponding t 99.9 1.2E-17 4.1E-22 160.1 50.5 357 84-470 38-433 (490)
16 3hym_B Cell division cycle pro 99.9 6.3E-19 2.2E-23 159.9 31.7 301 117-456 19-321 (330)
17 2xm6_A Protein corresponding t 99.9 1.1E-16 3.7E-21 153.5 48.3 355 63-449 56-449 (490)
18 2ooe_A Cleavage stimulation fa 99.9 1.2E-16 4.2E-21 154.7 48.0 402 55-469 17-492 (530)
19 3hym_B Cell division cycle pro 99.9 1.4E-18 4.7E-23 157.6 32.1 286 83-380 20-314 (330)
20 1fch_A Peroxisomal targeting s 99.8 3E-19 1E-23 164.8 24.6 282 157-468 66-358 (368)
21 2ooe_A Cleavage stimulation fa 99.8 1E-16 3.5E-21 155.2 40.7 384 73-470 2-455 (530)
22 1fch_A Peroxisomal targeting s 99.8 2E-18 6.9E-23 159.2 25.1 307 94-430 34-355 (368)
23 1b89_A Protein (clathrin heavy 99.8 8.7E-19 3E-23 158.5 21.0 283 64-393 17-305 (449)
24 4g1t_A Interferon-induced prot 99.8 5.7E-17 1.9E-21 154.9 33.3 364 81-471 47-461 (472)
25 4eqf_A PEX5-related protein; a 99.8 1.6E-18 5.6E-23 159.7 20.4 266 192-466 67-353 (365)
26 4eqf_A PEX5-related protein; a 99.8 9.2E-18 3.2E-22 154.6 25.0 236 83-324 63-310 (365)
27 3mkr_A Coatomer subunit epsilo 99.8 1E-16 3.5E-21 141.9 28.4 259 57-331 6-269 (291)
28 3cv0_A Peroxisome targeting si 99.8 5.5E-17 1.9E-21 146.8 26.8 259 56-320 27-311 (327)
29 3cv0_A Peroxisome targeting si 99.8 4.7E-17 1.6E-21 147.3 25.4 235 84-324 20-269 (327)
30 3mkr_A Coatomer subunit epsilo 99.8 2.2E-16 7.4E-21 139.8 28.1 272 164-461 8-286 (291)
31 1b89_A Protein (clathrin heavy 99.8 8.5E-18 2.9E-22 152.0 16.3 282 97-427 15-304 (449)
32 3spa_A Mtrpol, DNA-directed RN 99.8 2.3E-18 7.8E-23 168.1 12.0 151 84-239 126-286 (1134)
33 3spa_A Mtrpol, DNA-directed RN 99.7 3.4E-18 1.2E-22 166.9 10.2 112 122-233 129-244 (1134)
34 4g1t_A Interferon-induced prot 99.7 4.7E-15 1.6E-19 141.5 31.1 354 61-435 62-460 (472)
35 1xi4_A Clathrin heavy chain; a 99.7 1.2E-13 4E-18 139.7 41.5 323 84-468 984-1308(1630)
36 1xi4_A Clathrin heavy chain; a 99.7 2.1E-13 7.3E-18 137.8 40.6 340 62-464 997-1340(1630)
37 2pl2_A Hypothetical conserved 99.7 1.6E-15 5.4E-20 128.3 21.9 198 83-286 3-211 (217)
38 3uq3_A Heat shock protein STI1 99.7 4.2E-15 1.4E-19 129.4 25.1 225 226-469 6-236 (258)
39 3uq3_A Heat shock protein STI1 99.7 4.9E-15 1.7E-19 129.0 24.3 227 84-324 4-236 (258)
40 3e4b_A ALGK; tetratricopeptide 99.7 4.9E-15 1.7E-19 139.8 24.4 378 58-469 11-421 (452)
41 2pl2_A Hypothetical conserved 99.7 3.9E-15 1.3E-19 125.9 21.2 200 117-322 2-212 (217)
42 1ouv_A Conserved hypothetical 99.7 2.7E-13 9.2E-18 119.2 32.6 224 84-325 5-252 (273)
43 3u4t_A TPR repeat-containing p 99.7 5.1E-14 1.7E-18 123.7 26.6 236 85-324 3-250 (272)
44 3e4b_A ALGK; tetratricopeptide 99.7 1.5E-14 5.2E-19 136.5 24.4 351 90-471 8-389 (452)
45 2q7f_A YRRB protein; TPR, prot 99.7 1.6E-14 5.6E-19 124.5 21.0 203 83-290 21-223 (243)
46 2ho1_A Type 4 fimbrial biogene 99.6 1E-13 3.5E-18 120.2 25.7 201 85-289 37-238 (252)
47 1ouv_A Conserved hypothetical 99.6 6.6E-13 2.3E-17 116.6 31.0 228 189-435 5-252 (273)
48 2vq2_A PILW, putative fimbrial 99.6 2E-13 6.8E-18 116.0 26.4 202 84-288 7-210 (225)
49 2ho1_A Type 4 fimbrial biogene 99.6 2.2E-13 7.6E-18 118.1 27.1 202 120-325 37-239 (252)
50 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.1E-14 3.7E-19 128.2 18.8 245 64-318 19-269 (275)
51 2h6f_A Protein farnesyltransfe 99.6 1.3E-13 4.3E-18 126.2 26.1 234 84-324 96-348 (382)
52 2vq2_A PILW, putative fimbrial 99.6 3.1E-13 1.1E-17 114.8 26.3 204 118-324 6-211 (225)
53 3u4t_A TPR repeat-containing p 99.6 7.3E-14 2.5E-18 122.7 22.5 247 158-449 6-264 (272)
54 2h6f_A Protein farnesyltransfe 99.6 3E-13 1E-17 123.7 26.7 253 120-380 97-363 (382)
55 1xnf_A Lipoprotein NLPI; TPR, 99.6 9.4E-14 3.2E-18 122.1 22.6 248 96-358 16-269 (275)
56 2q7f_A YRRB protein; TPR, prot 99.6 1.9E-13 6.4E-18 117.8 21.8 203 118-325 21-223 (243)
57 4e6h_A MRNA 3'-END-processing 99.6 1.8E-10 6E-15 112.5 41.1 219 244-470 328-571 (679)
58 4a1s_A PINS, partner of inscut 99.6 1E-13 3.4E-18 129.7 17.5 279 155-469 48-372 (411)
59 3sf4_A G-protein-signaling mod 99.6 7E-14 2.4E-18 130.4 16.2 301 119-456 8-363 (406)
60 3sf4_A G-protein-signaling mod 99.6 2.6E-13 9E-18 126.5 19.7 279 154-469 8-336 (406)
61 2ond_A Cleavage stimulation fa 99.5 1.3E-11 4.4E-16 110.4 29.0 218 102-324 33-270 (308)
62 4a1s_A PINS, partner of inscut 99.5 2.4E-13 8.1E-18 127.2 18.1 280 120-435 48-373 (411)
63 2ond_A Cleavage stimulation fa 99.5 5E-12 1.7E-16 113.0 25.9 219 67-290 33-271 (308)
64 3vtx_A MAMA; tetratricopeptide 99.5 2.9E-12 1E-16 105.1 22.3 167 84-254 4-170 (184)
65 3ro2_A PINS homolog, G-protein 99.5 2.8E-13 9.5E-18 122.7 17.0 279 157-469 7-332 (338)
66 4abn_A Tetratricopeptide repea 99.5 5.1E-13 1.8E-17 126.8 18.8 217 99-321 82-318 (474)
67 3ulq_A Response regulator aspa 99.5 2.9E-12 1E-16 118.5 22.6 231 231-469 109-368 (383)
68 3ulq_A Response regulator aspa 99.5 6E-12 2E-16 116.4 24.7 163 161-323 109-292 (383)
69 3ro2_A PINS homolog, G-protein 99.5 6.4E-13 2.2E-17 120.3 17.3 275 120-435 5-333 (338)
70 3vtx_A MAMA; tetratricopeptide 99.5 8.3E-12 2.8E-16 102.4 22.3 166 119-288 4-169 (184)
71 4abn_A Tetratricopeptide repea 99.5 1.3E-12 4.6E-17 124.0 19.4 217 135-362 83-319 (474)
72 3nf1_A KLC 1, kinesin light ch 99.5 6.7E-13 2.3E-17 118.9 16.0 239 84-323 26-306 (311)
73 3nf1_A KLC 1, kinesin light ch 99.5 2.1E-12 7.3E-17 115.6 17.3 168 156-323 28-223 (311)
74 3q15_A PSP28, response regulat 99.4 6.9E-11 2.3E-15 109.0 24.6 228 232-468 108-364 (378)
75 3as5_A MAMA; tetratricopeptide 99.4 3.9E-11 1.3E-15 98.2 20.3 165 85-253 8-172 (186)
76 3q15_A PSP28, response regulat 99.4 1.6E-10 5.6E-15 106.5 25.6 163 161-324 107-290 (378)
77 1hz4_A MALT regulatory protein 99.4 3E-10 1E-14 104.5 26.7 201 229-434 97-322 (373)
78 4gyw_A UDP-N-acetylglucosamine 99.4 3.4E-11 1.2E-15 119.0 20.9 166 84-253 8-173 (723)
79 4e6h_A MRNA 3'-END-processing 99.4 9.9E-09 3.4E-13 100.3 37.2 376 63-450 79-584 (679)
80 1hz4_A MALT regulatory protein 99.4 3.5E-10 1.2E-14 104.1 25.8 270 195-469 19-322 (373)
81 4gyw_A UDP-N-acetylglucosamine 99.4 5.1E-11 1.8E-15 117.7 21.2 168 117-288 6-173 (723)
82 3as5_A MAMA; tetratricopeptide 99.4 9.5E-11 3.2E-15 95.9 19.7 162 122-287 10-171 (186)
83 4i17_A Hypothetical protein; T 99.3 3.6E-10 1.2E-14 96.1 21.9 196 83-290 5-210 (228)
84 3edt_B KLC 2, kinesin light ch 99.3 3.7E-11 1.3E-15 105.7 14.4 226 63-289 14-281 (283)
85 4i17_A Hypothetical protein; T 99.3 7.1E-10 2.4E-14 94.3 21.3 197 117-325 4-210 (228)
86 3edt_B KLC 2, kinesin light ch 99.3 8.2E-11 2.8E-15 103.5 15.2 227 97-323 13-280 (283)
87 2fo7_A Synthetic consensus TPR 99.2 2E-09 6.9E-14 82.6 17.2 129 87-218 3-131 (136)
88 2uy1_A Cleavage stimulation fa 99.2 7.1E-08 2.4E-12 91.4 30.0 204 242-468 196-412 (493)
89 3urz_A Uncharacterized protein 99.2 2.4E-09 8.3E-14 89.4 17.7 114 87-203 6-135 (208)
90 1qqe_A Vesicular transport pro 99.2 3.1E-09 1.1E-13 94.0 19.2 208 100-322 32-267 (292)
91 3qky_A Outer membrane assembly 99.1 3.4E-09 1.2E-13 92.1 18.9 100 84-184 14-126 (261)
92 3mv2_B Coatomer subunit epsilo 99.1 3.1E-08 1.1E-12 86.0 24.1 245 56-324 19-282 (310)
93 2fo7_A Synthetic consensus TPR 99.1 5.1E-09 1.7E-13 80.3 17.4 129 122-253 3-131 (136)
94 1qqe_A Vesicular transport pro 99.1 3.6E-09 1.2E-13 93.6 18.2 198 91-288 43-268 (292)
95 3mv2_B Coatomer subunit epsilo 99.1 1.4E-08 4.6E-13 88.2 20.4 180 104-290 85-283 (310)
96 2pzi_A Probable serine/threoni 99.1 1.5E-09 5.1E-14 107.8 16.3 174 96-275 402-583 (681)
97 3dra_A Protein farnesyltransfe 99.1 1.6E-07 5.4E-12 82.4 26.9 224 60-288 42-286 (306)
98 3dra_A Protein farnesyltransfe 99.1 1.2E-07 4.1E-12 83.2 25.7 219 100-323 48-286 (306)
99 3rjv_A Putative SEL1 repeat pr 99.1 2.9E-08 9.9E-13 83.0 21.1 175 139-325 5-198 (212)
100 2pzi_A Probable serine/threoni 99.1 1.5E-09 5.2E-14 107.7 15.3 173 131-310 402-583 (681)
101 3qky_A Outer membrane assembly 99.1 9.8E-09 3.4E-13 89.1 18.6 102 117-219 12-126 (261)
102 3rjv_A Putative SEL1 repeat pr 99.1 2.2E-08 7.6E-13 83.7 20.1 142 68-219 4-158 (212)
103 3urz_A Uncharacterized protein 99.1 9.3E-09 3.2E-13 85.8 17.2 172 54-232 8-197 (208)
104 2r5s_A Uncharacterized protein 99.0 3.2E-09 1.1E-13 86.0 13.3 161 88-252 9-171 (176)
105 2uy1_A Cleavage stimulation fa 99.0 1E-06 3.5E-11 83.5 31.5 357 51-433 15-412 (493)
106 3qou_A Protein YBBN; thioredox 99.0 1.1E-08 3.9E-13 90.0 16.8 167 117-287 114-282 (287)
107 2vsy_A XCC0866; transferase, g 99.0 1.4E-08 4.7E-13 99.1 18.2 153 64-220 3-158 (568)
108 4ga2_A E3 SUMO-protein ligase 99.0 2.2E-09 7.4E-14 84.4 10.3 84 123-208 34-117 (150)
109 4ga2_A E3 SUMO-protein ligase 99.0 3.3E-09 1.1E-13 83.3 11.0 141 165-309 7-148 (150)
110 2yhc_A BAMD, UPF0169 lipoprote 99.0 6.4E-08 2.2E-12 81.8 19.8 186 85-290 4-214 (225)
111 3qou_A Protein YBBN; thioredox 99.0 2E-08 6.7E-13 88.5 17.0 167 152-322 114-282 (287)
112 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.3E-07 4.5E-12 79.9 20.9 198 259-475 3-219 (225)
113 2r5s_A Uncharacterized protein 99.0 9.5E-09 3.2E-13 83.2 13.2 159 123-285 9-169 (176)
114 2vsy_A XCC0866; transferase, g 99.0 2.6E-08 8.9E-13 97.1 18.3 152 99-254 3-157 (568)
115 2ifu_A Gamma-SNAP; membrane fu 98.9 2E-08 6.9E-13 89.4 15.6 197 63-287 4-222 (307)
116 3q7a_A Farnesyltransferase alp 98.9 4.1E-06 1.4E-10 74.2 26.5 136 66-205 70-216 (349)
117 3q7a_A Farnesyltransferase alp 98.8 5.5E-06 1.9E-10 73.5 26.5 222 98-324 67-331 (349)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.4E-07 1.2E-11 76.5 18.3 129 87-220 8-151 (213)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.8 5.4E-07 1.8E-11 75.2 19.0 129 122-255 8-151 (213)
120 3u3w_A Transcriptional activat 98.8 1.1E-06 3.8E-11 77.5 21.8 160 127-286 82-263 (293)
121 1a17_A Serine/threonine protei 98.8 2.6E-07 9E-12 73.6 16.2 129 85-216 13-143 (166)
122 4gco_A Protein STI-1; structur 98.8 2.1E-07 7.1E-12 70.4 14.6 97 86-184 14-110 (126)
123 1na0_A Designed protein CTPR3; 98.8 3.2E-07 1.1E-11 69.0 15.2 113 85-200 9-121 (125)
124 3u3w_A Transcriptional activat 98.8 8.4E-07 2.9E-11 78.3 20.0 166 88-253 78-265 (293)
125 3gyz_A Chaperone protein IPGC; 98.8 7.2E-08 2.4E-12 75.3 11.3 98 371-470 37-134 (151)
126 2vgx_A Chaperone SYCD; alterna 98.7 4.2E-08 1.4E-12 76.7 9.3 86 347-434 33-118 (148)
127 4gco_A Protein STI-1; structur 98.7 4.5E-07 1.5E-11 68.5 14.6 93 159-253 17-109 (126)
128 2ifu_A Gamma-SNAP; membrane fu 98.7 5.4E-07 1.8E-11 80.1 17.3 164 88-252 39-222 (307)
129 2qfc_A PLCR protein; TPR, HTH, 98.7 3.8E-06 1.3E-10 74.0 22.8 165 122-286 77-263 (293)
130 2lni_A Stress-induced-phosphop 98.7 3.7E-07 1.3E-11 69.5 13.9 118 83-203 14-131 (133)
131 2qfc_A PLCR protein; TPR, HTH, 98.7 2.8E-06 9.5E-11 74.9 21.3 169 85-253 75-265 (293)
132 1a17_A Serine/threonine protei 98.7 7.5E-07 2.6E-11 70.9 16.0 127 122-251 15-143 (166)
133 2vyi_A SGTA protein; chaperone 98.7 5.1E-07 1.7E-11 68.4 14.3 119 84-205 11-129 (131)
134 2c2l_A CHIP, carboxy terminus 98.7 7.4E-08 2.5E-12 84.5 10.7 98 84-183 3-100 (281)
135 3gyz_A Chaperone protein IPGC; 98.7 5.4E-07 1.8E-11 70.3 14.0 99 84-184 35-133 (151)
136 1na0_A Designed protein CTPR3; 98.7 1.3E-06 4.3E-11 65.5 15.5 95 157-253 11-105 (125)
137 4f3v_A ESX-1 secretion system 98.7 1.5E-06 5.1E-11 74.5 17.2 187 97-289 18-237 (282)
138 3gw4_A Uncharacterized protein 98.7 3.3E-07 1.1E-11 75.8 13.1 133 120-252 26-174 (203)
139 2c2l_A CHIP, carboxy terminus 98.6 2.8E-07 9.7E-12 80.7 12.6 196 154-363 3-198 (281)
140 2vyi_A SGTA protein; chaperone 98.6 1.3E-06 4.3E-11 66.2 14.9 94 158-253 15-108 (131)
141 3gw4_A Uncharacterized protein 98.6 4E-07 1.4E-11 75.3 12.9 157 61-218 3-175 (203)
142 2lni_A Stress-induced-phosphop 98.6 9.6E-07 3.3E-11 67.2 14.1 95 157-253 18-112 (133)
143 2e2e_A Formate-dependent nitri 98.6 3.2E-07 1.1E-11 74.2 11.9 121 62-185 22-145 (177)
144 2e2e_A Formate-dependent nitri 98.6 3.3E-07 1.1E-11 74.1 11.8 120 97-219 22-144 (177)
145 3dss_A Geranylgeranyl transfer 98.6 7.9E-05 2.7E-09 65.7 27.4 130 67-200 47-189 (331)
146 2vgx_A Chaperone SYCD; alterna 98.6 2.5E-07 8.7E-12 72.2 10.1 27 156-182 56-82 (148)
147 4f3v_A ESX-1 secretion system 98.6 1.2E-06 4.3E-11 74.9 14.8 197 62-266 18-247 (282)
148 2kck_A TPR repeat; tetratricop 98.6 1.3E-06 4.4E-11 64.1 13.3 102 369-472 5-109 (112)
149 2xcb_A PCRH, regulatory protei 98.6 2.7E-07 9.4E-12 71.5 9.8 86 347-434 30-115 (142)
150 1p5q_A FKBP52, FK506-binding p 98.6 1.3E-06 4.5E-11 78.6 15.6 123 84-209 146-283 (336)
151 1elw_A TPR1-domain of HOP; HOP 98.6 3.3E-06 1.1E-10 62.5 15.3 98 85-184 4-101 (118)
152 3upv_A Heat shock protein STI1 98.6 1.1E-06 3.7E-11 66.4 12.3 96 372-469 6-101 (126)
153 3dss_A Geranylgeranyl transfer 98.6 6.2E-05 2.1E-09 66.4 24.7 96 172-270 91-189 (331)
154 3upv_A Heat shock protein STI1 98.5 2.9E-06 1E-10 64.0 14.1 98 85-184 4-101 (126)
155 1p5q_A FKBP52, FK506-binding p 98.5 2.2E-06 7.6E-11 77.1 15.5 87 191-279 197-283 (336)
156 4gcn_A Protein STI-1; structur 98.5 5.2E-07 1.8E-11 68.3 9.2 99 371-470 9-113 (127)
157 4gcn_A Protein STI-1; structur 98.5 3.1E-06 1.1E-10 63.9 13.0 98 86-184 9-112 (127)
158 3sz7_A HSC70 cochaperone (SGT) 98.5 1.8E-06 6.1E-11 68.7 12.2 98 331-435 12-109 (164)
159 4b4t_Q 26S proteasome regulato 98.5 8.2E-06 2.8E-10 76.4 18.7 167 298-468 58-244 (434)
160 1elw_A TPR1-domain of HOP; HOP 98.5 9.3E-06 3.2E-10 59.9 15.4 97 121-219 5-101 (118)
161 3q49_B STIP1 homology and U bo 98.5 3.3E-06 1.1E-10 64.7 13.1 98 369-468 8-105 (137)
162 2xcb_A PCRH, regulatory protei 98.5 1.8E-06 6.3E-11 66.7 11.5 99 84-184 17-115 (142)
163 1hxi_A PEX5, peroxisome target 98.5 1.5E-06 5.1E-11 65.1 10.6 97 372-470 19-115 (121)
164 2fbn_A 70 kDa peptidylprolyl i 98.4 4.2E-06 1.4E-10 68.9 13.9 122 85-209 38-175 (198)
165 2kck_A TPR repeat; tetratricop 98.4 4E-06 1.4E-10 61.4 12.3 98 85-184 6-106 (112)
166 1elr_A TPR2A-domain of HOP; HO 98.4 2.6E-06 8.9E-11 64.4 11.5 109 85-196 4-118 (131)
167 3q49_B STIP1 homology and U bo 98.4 4E-06 1.4E-10 64.2 12.6 100 83-184 7-106 (137)
168 3sz7_A HSC70 cochaperone (SGT) 98.4 4.9E-06 1.7E-10 66.1 12.9 99 84-184 10-108 (164)
169 2dba_A Smooth muscle cell asso 98.4 1.5E-05 5E-10 61.8 15.3 110 83-196 26-139 (148)
170 2fbn_A 70 kDa peptidylprolyl i 98.4 5E-06 1.7E-10 68.5 13.0 103 371-475 89-192 (198)
171 2dba_A Smooth muscle cell asso 98.3 2.3E-05 7.8E-10 60.7 15.3 95 156-253 29-127 (148)
172 1hxi_A PEX5, peroxisome target 98.3 5.5E-06 1.9E-10 61.9 10.9 94 88-183 20-113 (121)
173 1elr_A TPR2A-domain of HOP; HO 98.3 6.9E-06 2.3E-10 62.0 11.5 98 121-219 5-108 (131)
174 4b4t_Q 26S proteasome regulato 98.3 7.1E-05 2.4E-09 69.9 20.6 201 53-253 7-244 (434)
175 2hr2_A Hypothetical protein; a 98.3 8E-06 2.7E-10 63.1 10.9 96 373-469 14-131 (159)
176 2xev_A YBGF; tetratricopeptide 98.3 1.7E-05 5.7E-10 59.9 12.5 86 347-434 14-105 (129)
177 1wao_1 Serine/threonine protei 98.3 3.3E-06 1.1E-10 79.8 10.2 115 347-464 18-134 (477)
178 2xev_A YBGF; tetratricopeptide 98.3 3.8E-05 1.3E-09 57.8 14.4 94 89-184 6-105 (129)
179 3k9i_A BH0479 protein; putativ 98.2 2.2E-06 7.6E-11 63.7 6.0 88 347-435 2-91 (117)
180 1wao_1 Serine/threonine protei 98.2 1.1E-06 3.8E-11 83.1 4.9 123 89-214 10-134 (477)
181 3rkv_A Putative peptidylprolyl 98.2 1.2E-05 4.2E-10 63.6 10.3 88 347-435 23-127 (162)
182 3ro3_A PINS homolog, G-protein 98.2 1.2E-05 4E-10 63.3 10.2 95 158-252 52-156 (164)
183 1klx_A Cysteine rich protein B 98.2 9E-05 3.1E-09 56.7 14.7 114 347-471 7-128 (138)
184 3ro3_A PINS homolog, G-protein 98.2 1.7E-05 5.8E-10 62.4 10.9 134 85-218 9-157 (164)
185 1ihg_A Cyclophilin 40; ppiase 98.2 2.7E-05 9.4E-10 70.8 13.5 138 86-245 224-361 (370)
186 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.9E-05 9.9E-10 73.0 13.8 138 85-245 268-405 (457)
187 3rkv_A Putative peptidylprolyl 98.1 3.7E-05 1.3E-09 60.8 12.4 100 84-184 10-126 (162)
188 1dce_A Protein (RAB geranylger 98.1 0.00015 5.3E-09 69.8 18.6 174 62-240 40-241 (567)
189 1dce_A Protein (RAB geranylger 98.1 0.00021 7E-09 68.9 18.9 174 100-278 44-244 (567)
190 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 5.6E-05 1.9E-09 71.1 14.4 132 154-288 267-414 (457)
191 1ihg_A Cyclophilin 40; ppiase 98.1 5.7E-05 1.9E-09 68.7 13.3 121 157-279 225-360 (370)
192 3k9i_A BH0479 protein; putativ 98.0 1.6E-05 5.6E-10 58.9 8.0 59 157-216 29-87 (117)
193 1klx_A Cysteine rich protein B 98.0 0.00018 6.1E-09 55.0 14.0 109 100-219 10-126 (138)
194 2if4_A ATFKBP42; FKBP-like, al 97.9 2.7E-05 9.3E-10 70.0 9.0 149 85-254 179-328 (338)
195 2l6j_A TPR repeat-containing p 97.9 1.3E-05 4.4E-10 58.6 5.4 95 369-465 3-103 (111)
196 2if4_A ATFKBP42; FKBP-like, al 97.9 4.7E-05 1.6E-09 68.5 9.5 148 156-324 180-328 (338)
197 2hr2_A Hypothetical protein; a 97.9 0.00025 8.5E-09 54.8 12.1 61 157-218 59-130 (159)
198 1zu2_A Mitochondrial import re 97.9 0.00014 4.9E-09 56.0 10.3 121 347-477 14-155 (158)
199 2l6j_A TPR repeat-containing p 97.8 2E-05 7E-10 57.5 4.9 93 84-178 3-101 (111)
200 1na3_A Designed protein CTPR2; 97.8 0.00019 6.3E-09 50.0 9.5 83 370-454 9-91 (91)
201 2kat_A Uncharacterized protein 97.8 0.00021 7.3E-09 52.5 10.3 80 353-434 3-82 (115)
202 3n71_A Histone lysine methyltr 97.8 0.00021 7.1E-09 67.2 11.9 60 262-321 353-419 (490)
203 3n71_A Histone lysine methyltr 97.8 0.00011 3.9E-09 69.0 10.0 122 202-323 321-463 (490)
204 1na3_A Designed protein CTPR2; 97.7 0.00035 1.2E-08 48.5 10.4 80 85-166 9-88 (91)
205 2kat_A Uncharacterized protein 97.7 0.00035 1.2E-08 51.2 10.3 77 69-147 4-80 (115)
206 3ma5_A Tetratricopeptide repea 97.6 0.00026 9E-09 50.5 8.4 82 369-451 6-88 (100)
207 1zu2_A Mitochondrial import re 97.6 0.00024 8E-09 54.8 7.7 84 99-184 16-120 (158)
208 3ma5_A Tetratricopeptide repea 97.5 0.00035 1.2E-08 49.8 7.6 63 405-468 7-69 (100)
209 3qww_A SET and MYND domain-con 97.3 0.00058 2E-08 63.1 8.6 86 383-468 311-410 (433)
210 3ly7_A Transcriptional activat 97.3 0.0092 3.1E-07 53.0 14.9 134 82-218 191-338 (372)
211 3ly7_A Transcriptional activat 97.3 0.0027 9.1E-08 56.4 11.5 147 292-444 191-347 (372)
212 2kc7_A BFR218_protein; tetratr 97.1 0.00068 2.3E-08 48.0 5.5 83 376-468 6-89 (99)
213 3qwp_A SET and MYND domain-con 97.1 0.0013 4.6E-08 60.7 8.7 61 407-467 331-398 (429)
214 3bee_A Putative YFRE protein; 97.0 0.0061 2.1E-07 42.4 9.1 66 369-435 5-73 (93)
215 3u64_A Protein TP_0956; tetrat 96.8 0.19 6.6E-06 42.8 19.2 85 171-257 179-272 (301)
216 3qww_A SET and MYND domain-con 96.7 0.0042 1.4E-07 57.4 7.9 84 239-322 312-409 (433)
217 1pc2_A Mitochondria fission pr 96.7 0.0091 3.1E-07 45.4 8.2 87 347-435 10-101 (152)
218 3mkq_A Coatomer beta'-subunit; 96.6 0.054 1.8E-06 54.9 16.6 129 124-285 633-761 (814)
219 3qwp_A SET and MYND domain-con 96.6 0.01 3.6E-07 54.8 10.1 89 234-322 296-398 (429)
220 3mkq_A Coatomer beta'-subunit; 96.5 0.053 1.8E-06 54.9 15.8 156 56-250 605-761 (814)
221 2kc7_A BFR218_protein; tetratr 96.5 0.026 9E-07 39.4 9.6 59 91-150 6-65 (99)
222 1wy6_A Hypothetical protein ST 96.5 0.16 5.4E-06 37.3 16.0 140 305-471 17-156 (172)
223 3u64_A Protein TP_0956; tetrat 96.3 0.071 2.4E-06 45.4 12.5 96 347-442 175-279 (301)
224 3bee_A Putative YFRE protein; 96.3 0.051 1.8E-06 37.6 9.7 46 172-218 26-71 (93)
225 1pc2_A Mitochondria fission pr 96.2 0.025 8.4E-07 43.0 8.3 65 118-183 30-99 (152)
226 2v5f_A Prolyl 4-hydroxylase su 96.1 0.061 2.1E-06 38.2 9.9 67 83-149 3-75 (104)
227 2v5f_A Prolyl 4-hydroxylase su 96.1 0.056 1.9E-06 38.4 9.7 67 369-435 4-76 (104)
228 3mkq_B Coatomer subunit alpha; 96.0 0.28 9.5E-06 38.3 13.4 106 55-181 10-115 (177)
229 3mkq_B Coatomer subunit alpha; 95.9 0.41 1.4E-05 37.4 13.9 26 155-180 34-59 (177)
230 4h7y_A Dual specificity protei 95.8 0.058 2E-06 40.5 8.2 103 369-473 12-127 (161)
231 3lvg_A Clathrin heavy chain 1; 95.5 0.00014 4.7E-09 65.9 -7.8 192 61-273 65-276 (624)
232 1nzn_A CGI-135 protein, fissio 95.3 0.11 3.6E-06 38.0 8.2 87 347-435 13-104 (126)
233 1wy6_A Hypothetical protein ST 95.3 0.59 2E-05 34.4 14.1 67 190-257 91-157 (172)
234 4h7y_A Dual specificity protei 95.2 0.5 1.7E-05 35.5 11.6 100 84-185 12-124 (161)
235 1qsa_A Protein (soluble lytic 94.6 3.4 0.00012 39.9 26.2 119 310-433 229-347 (618)
236 1nzn_A CGI-135 protein, fissio 94.5 0.19 6.4E-06 36.7 7.8 66 118-183 33-102 (126)
237 4b4t_P 26S proteasome regulato 94.3 3.2 0.00011 38.3 20.5 190 62-253 28-246 (445)
238 4b4t_P 26S proteasome regulato 93.8 2.7 9.4E-05 38.8 16.1 94 374-467 141-245 (445)
239 1v54_E Cytochrome C oxidase po 93.7 0.89 3.1E-05 31.3 9.0 63 385-448 25-87 (109)
240 4ady_A RPN2, 26S proteasome re 93.0 8.7 0.0003 38.9 23.4 255 60-323 384-657 (963)
241 3o48_A Mitochondria fission 1 92.9 1.2 4.2E-05 32.6 9.5 70 366-435 36-108 (134)
242 1y8m_A FIS1; mitochondria, unk 92.4 2.6 8.8E-05 31.4 11.7 69 367-435 36-107 (144)
243 4gns_B Protein CSD3, chitin bi 92.3 1.1 3.6E-05 44.3 11.3 26 299-324 252-278 (754)
244 4gns_B Protein CSD3, chitin bi 92.2 0.81 2.8E-05 45.1 10.3 61 370-432 613-682 (754)
245 2ff4_A Probable regulatory pro 91.7 0.94 3.2E-05 41.1 9.7 70 193-263 174-248 (388)
246 2y69_E Cytochrome C oxidase su 91.6 2.1 7E-05 31.4 9.1 64 385-449 68-131 (152)
247 3lvg_A Clathrin heavy chain 1; 91.5 0.0002 6.8E-09 64.9 -14.1 166 120-315 54-219 (624)
248 4fhn_B Nucleoporin NUP120; pro 91.5 6.3 0.00022 41.6 16.9 83 226-310 900-986 (1139)
249 2ff4_A Probable regulatory pro 91.3 1.6 5.4E-05 39.6 10.8 74 122-196 173-251 (388)
250 1v54_E Cytochrome C oxidase po 91.0 1.5 5.2E-05 30.2 7.6 63 350-413 25-87 (109)
251 3esl_A Checkpoint serine/threo 90.0 2.1 7.2E-05 34.1 8.8 53 386-438 95-148 (202)
252 4ady_A RPN2, 26S proteasome re 89.0 21 0.00073 36.2 29.6 154 305-467 500-656 (963)
253 3txn_A 26S proteasome regulato 88.5 14 0.00047 33.3 19.0 30 440-471 316-345 (394)
254 3ffl_A Anaphase-promoting comp 88.1 4.4 0.00015 31.1 9.1 27 156-182 123-149 (167)
255 2y69_E Cytochrome C oxidase su 87.8 3.1 0.00011 30.4 7.6 63 350-413 68-130 (152)
256 3ffl_A Anaphase-promoting comp 87.7 5.7 0.0002 30.5 9.5 26 441-466 123-148 (167)
257 3o48_A Mitochondria fission 1 87.6 6.3 0.00022 28.9 9.3 72 326-399 36-107 (134)
258 3txn_A 26S proteasome regulato 86.8 17 0.00059 32.7 23.8 133 120-253 19-167 (394)
259 4fhn_B Nucleoporin NUP120; pro 85.9 19 0.00066 37.9 15.8 197 195-398 817-1049(1139)
260 4b4t_R RPN7, 26S proteasome re 85.3 7.4 0.00025 35.7 11.1 59 263-321 134-194 (429)
261 3lpz_A GET4 (YOR164C homolog); 83.9 21 0.00073 31.1 21.9 171 263-468 38-215 (336)
262 2wvi_A Mitotic checkpoint seri 83.4 7.5 0.00026 29.8 8.4 49 389-437 79-128 (164)
263 4b4t_R RPN7, 26S proteasome re 82.5 13 0.00046 34.0 11.5 98 156-253 132-236 (429)
264 1y8m_A FIS1; mitochondria, unk 82.4 13 0.00045 27.6 11.8 75 327-405 36-110 (144)
265 3lpz_A GET4 (YOR164C homolog); 81.0 28 0.00094 30.4 20.9 31 46-76 8-41 (336)
266 2wpv_A GET4, UPF0363 protein Y 80.7 27 0.00094 30.2 19.9 27 50-76 13-39 (312)
267 2wpv_A GET4, UPF0363 protein Y 77.9 34 0.0012 29.6 20.3 118 262-394 35-158 (312)
268 3esl_A Checkpoint serine/threo 77.6 23 0.0008 28.1 9.7 55 134-188 93-148 (202)
269 1zbp_A Hypothetical protein VP 77.2 8.7 0.0003 32.2 7.5 54 130-184 7-60 (273)
270 4aez_C MAD3, mitotic spindle c 76.7 8.7 0.0003 31.1 7.1 51 423-473 132-183 (223)
271 1zbp_A Hypothetical protein VP 76.1 14 0.00049 30.9 8.5 53 95-148 7-59 (273)
272 1qsa_A Protein (soluble lytic 73.8 67 0.0023 31.0 33.4 79 276-362 268-346 (618)
273 1wdy_A 2-5A-dependent ribonucl 73.7 19 0.00067 30.1 9.5 87 382-476 191-282 (285)
274 2uwj_G Type III export protein 68.1 26 0.0009 24.1 7.5 87 99-194 20-106 (115)
275 2p58_C Putative type III secre 67.4 28 0.00094 24.0 8.3 88 98-194 20-107 (116)
276 2uwj_G Type III export protein 67.4 27 0.00094 24.0 9.0 78 135-220 21-98 (115)
277 2p58_C Putative type III secre 66.5 29 0.00099 23.9 10.1 78 135-220 22-99 (116)
278 2d2s_A Exocyst complex compone 65.6 38 0.0013 27.9 8.8 88 377-467 25-118 (235)
279 3eiq_C Programmed cell death p 65.6 72 0.0025 28.2 12.0 69 263-332 220-290 (358)
280 1wdy_A 2-5A-dependent ribonucl 65.3 24 0.00082 29.5 8.2 22 272-293 191-212 (285)
281 4a1g_A Mitotic checkpoint seri 62.7 47 0.0016 25.0 15.1 53 422-474 82-135 (152)
282 4a1g_A Mitotic checkpoint seri 61.5 50 0.0017 24.9 9.3 52 137-188 82-134 (152)
283 2d2s_A Exocyst complex compone 59.8 69 0.0023 26.3 9.4 90 90-182 23-118 (235)
284 3eiq_C Programmed cell death p 57.7 1E+02 0.0035 27.3 12.2 74 228-302 220-295 (358)
285 3kea_A K1L; tropism, ANK repea 56.9 43 0.0015 28.3 8.2 185 91-297 34-225 (285)
286 2wvi_A Mitotic checkpoint seri 55.0 69 0.0024 24.5 9.4 52 138-189 78-130 (164)
287 2zu6_B Programmed cell death p 54.6 93 0.0032 26.8 9.7 25 88-112 6-30 (307)
288 3pvs_A Replication-associated 53.7 1.3E+02 0.0046 27.5 14.9 86 381-466 266-356 (447)
289 4g8k_A 2-5A-dependent ribonucl 52.5 90 0.0031 27.0 9.8 84 378-476 244-330 (337)
290 2qx5_A Nucleoporin NIC96; mRNA 52.3 1.8E+02 0.006 28.4 15.1 83 266-362 300-383 (661)
291 2ijq_A Hypothetical protein; s 48.7 87 0.003 23.9 7.9 62 51-112 33-102 (161)
292 1k1a_A B-cell lymphoma 3-encod 48.7 76 0.0026 25.5 8.3 28 91-118 12-39 (241)
293 4aez_C MAD3, mitotic spindle c 48.2 1E+02 0.0034 25.0 8.2 53 102-154 131-184 (223)
294 2r9g_A AAA ATPase, central reg 47.1 1.1E+02 0.0036 24.3 10.3 85 381-466 25-114 (204)
295 3bge_A Predicted ATPase; struc 45.9 1.1E+02 0.0038 24.2 8.8 55 381-435 18-77 (201)
296 1n11_A Ankyrin; clathrin, BAND 44.7 1.2E+02 0.0041 27.4 9.7 39 71-109 28-68 (437)
297 2nsz_A Programmed cell death p 44.0 90 0.0031 22.6 7.7 65 263-328 10-76 (129)
298 3hra_A Ankyrin repeat family p 42.9 44 0.0015 26.1 5.7 11 237-247 14-24 (201)
299 3ctd_A Putative ATPase, AAA fa 42.9 1.3E+02 0.0044 24.1 9.6 57 381-437 46-107 (213)
300 3eu9_A Huntingtin-interacting 42.5 26 0.0009 28.3 4.4 14 91-104 45-58 (240)
301 3hra_A Ankyrin repeat family p 41.6 55 0.0019 25.5 6.1 13 96-108 13-25 (201)
302 1bpo_A Protein (clathrin); cla 41.3 2.2E+02 0.0074 26.3 11.5 112 98-214 342-453 (494)
303 2fe3_A Peroxide operon regulat 41.2 99 0.0034 22.9 7.0 37 418-454 34-70 (145)
304 2ion_A PDCD4, programmed cell 40.5 88 0.003 23.5 6.5 65 263-328 12-78 (152)
305 1mzb_A Ferric uptake regulatio 40.5 1E+02 0.0035 22.5 6.9 60 361-421 9-69 (136)
306 3bge_A Predicted ATPase; struc 39.2 1.4E+02 0.0048 23.6 8.6 30 54-83 11-40 (201)
307 2xig_A Ferric uptake regulatio 38.5 1.1E+02 0.0036 22.9 6.8 46 375-420 31-76 (150)
308 3eyy_A Putative iron uptake re 37.3 1.2E+02 0.0041 22.4 6.9 21 313-333 35-55 (145)
309 1wgl_A TOLL-interacting protei 37.1 36 0.0012 20.7 3.2 35 83-119 23-57 (59)
310 2w57_A Ferric uptake regulatio 37.0 1.1E+02 0.0038 22.8 6.7 45 376-420 22-67 (150)
311 3t8k_A Uncharacterized protein 36.7 89 0.003 24.3 6.5 23 131-153 46-68 (186)
312 3ltm_A Alpha-REP4; protein eng 36.2 1.6E+02 0.0053 23.1 18.3 198 90-310 6-203 (211)
313 4ets_A Ferric uptake regulatio 35.9 1.3E+02 0.0044 22.9 7.0 59 362-421 25-85 (162)
314 2qx5_A Nucleoporin NIC96; mRNA 35.9 3.2E+02 0.011 26.6 15.3 41 90-131 157-197 (661)
315 3pvs_A Replication-associated 35.9 2.6E+02 0.0088 25.6 13.6 37 203-239 268-304 (447)
316 3jxi_A Vanilloid receptor-rela 35.3 21 0.00072 29.6 2.7 55 57-111 9-72 (260)
317 2f6m_A Suppressor protein STP2 35.1 57 0.0019 20.3 3.8 44 88-132 5-48 (65)
318 2r9g_A AAA ATPase, central reg 34.3 1.7E+02 0.0059 23.1 10.7 29 52-80 16-44 (204)
319 3ctd_A Putative ATPase, AAA fa 33.5 1.8E+02 0.0063 23.2 9.4 55 98-152 48-107 (213)
320 2fe3_A Peroxide operon regulat 33.4 1.4E+02 0.005 22.0 8.4 22 269-290 30-51 (145)
321 2ion_A PDCD4, programmed cell 33.2 1.5E+02 0.0052 22.2 7.8 22 125-146 14-35 (152)
322 3eyy_A Putative iron uptake re 32.9 88 0.003 23.2 5.5 34 386-419 33-66 (145)
323 2w57_A Ferric uptake regulatio 32.8 1.5E+02 0.0052 22.0 7.5 14 276-289 33-46 (150)
324 3ljn_A Hypothetical protein; a 32.6 1E+02 0.0036 26.9 7.0 87 91-185 23-111 (364)
325 1mzb_A Ferric uptake regulatio 32.5 1.4E+02 0.0049 21.7 7.5 21 312-332 35-55 (136)
326 2crb_A Nuclear receptor bindin 32.4 75 0.0026 21.4 4.2 20 446-465 21-40 (97)
327 4gq2_M Nucleoporin NUP120; bet 32.2 3.5E+02 0.012 27.8 11.4 49 226-274 898-950 (950)
328 3ubw_A 14-3-3E, 14-3-3 protein 32.2 2.2E+02 0.0075 23.7 10.0 56 196-251 37-93 (261)
329 3jxi_A Vanilloid receptor-rela 31.4 22 0.00074 29.5 2.1 24 130-153 12-35 (260)
330 1n11_A Ankyrin; clathrin, BAND 30.3 2.7E+02 0.0093 24.9 9.6 335 90-477 16-374 (437)
331 2xig_A Ferric uptake regulatio 30.2 1.7E+02 0.0058 21.8 8.2 31 310-340 41-71 (150)
332 1k1a_A B-cell lymphoma 3-encod 30.0 2.1E+02 0.0071 22.7 9.4 24 234-257 15-38 (241)
333 4b4t_S RPN3, 26S proteasome re 29.9 3.5E+02 0.012 25.3 11.9 64 120-183 231-298 (523)
334 3kea_A K1L; tropism, ANK repea 29.8 1.4E+02 0.0047 25.0 7.1 202 232-466 35-244 (285)
335 1oai_A Nuclear RNA export fact 28.1 48 0.0016 20.2 2.6 22 98-119 33-55 (59)
336 2keb_A DNA polymerase subunit 27.8 1.5E+02 0.005 20.3 6.7 29 69-97 28-56 (101)
337 1o9d_A 14-3-3-like protein C; 27.8 2.7E+02 0.0091 23.2 8.7 20 379-398 187-206 (260)
338 2b7e_A PRE-mRNA processing pro 27.6 54 0.0018 20.0 2.7 29 352-380 3-31 (59)
339 4ets_A Ferric uptake regulatio 27.1 2E+02 0.007 21.7 7.3 24 266-289 38-61 (162)
340 2ijq_A Hypothetical protein; s 27.1 2.1E+02 0.0071 21.8 8.3 51 97-147 44-102 (161)
341 2nsz_A Programmed cell death p 27.0 1.8E+02 0.0061 21.0 9.1 22 125-146 12-33 (129)
342 2f6m_A Suppressor protein STP2 27.0 1E+02 0.0035 19.2 4.0 44 158-202 5-48 (65)
343 2yru_A Steroid receptor RNA ac 26.7 1.3E+02 0.0043 21.5 5.0 41 73-113 49-89 (118)
344 3ygs_P Procaspase 9; apoptosis 26.6 1.5E+02 0.0052 20.1 5.6 38 99-140 51-88 (97)
345 3t8k_A Uncharacterized protein 26.5 2.2E+02 0.0076 21.9 8.3 19 242-260 91-109 (186)
346 4gq2_M Nucleoporin NUP120; bet 26.0 5.5E+02 0.019 26.3 11.8 49 191-239 898-950 (950)
347 2o03_A Probable zinc uptake re 26.0 1.5E+02 0.0052 21.3 5.7 30 311-340 26-55 (131)
348 3uzd_A 14-3-3 protein gamma; s 25.5 2.9E+02 0.0098 22.8 9.3 56 196-251 10-66 (248)
349 2o03_A Probable zinc uptake re 25.2 98 0.0033 22.4 4.5 31 103-133 28-58 (131)
350 3mwm_A ZUR, putative metal upt 24.6 1.4E+02 0.0048 21.9 5.3 16 275-290 28-43 (139)
351 2yru_A Steroid receptor RNA ac 24.5 1.3E+02 0.0045 21.4 4.8 43 107-149 48-90 (118)
352 3twr_A Tankyrase-2; ankyrin re 24.2 2.2E+02 0.0074 21.0 6.9 9 466-474 127-135 (165)
353 3aji_A 26S proteasome non-ATPa 24.0 1.4E+02 0.0047 23.7 5.8 189 89-294 7-199 (231)
354 4b4t_S RPN3, 26S proteasome re 23.9 4.5E+02 0.016 24.6 12.3 65 190-254 231-299 (523)
355 3mwm_A ZUR, putative metal upt 22.8 87 0.003 23.0 3.8 31 103-133 31-61 (139)
356 1zl8_A LIN-7; heterodimer, alp 22.8 1.2E+02 0.0042 17.6 4.9 16 420-435 8-23 (53)
357 2npm_A 14-3-3 domain containin 22.1 3.4E+02 0.012 22.6 9.6 21 379-399 207-227 (260)
358 3eu9_A Huntingtin-interacting 21.4 1.5E+02 0.0051 23.6 5.5 46 94-143 15-62 (240)
359 2rfa_A Transient receptor pote 21.1 2.5E+02 0.0087 22.1 6.9 19 236-254 162-180 (232)
360 3iqu_A 14-3-3 protein sigma; s 20.3 3.6E+02 0.012 22.1 8.9 58 195-252 13-71 (236)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-35 Score=289.71 Aligned_cols=396 Identities=11% Similarity=-0.000 Sum_probs=323.1
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 011714 60 RIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEA 139 (479)
Q Consensus 60 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 139 (479)
.++.+++++|+.+|+.+... .|+..++..++.+|.+.|++++|+.+|+++... +++..+++.++.+|.+.|++++|
T Consensus 94 ~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 169 (597)
T 2xpi_A 94 ALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGA 169 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHH
Confidence 45678899999999999854 457788899999999999999999999988643 67888999999999999999999
Q ss_pred HHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC------------------
Q 011714 140 RKVIDCMFDN---------------GYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGC------------------ 186 (479)
Q Consensus 140 ~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------------------ 186 (479)
.++|+++... +.+.+..+|+.++.+|.+.|++++|.++|+++.+.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 249 (597)
T 2xpi_A 170 LNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTAD 249 (597)
T ss_dssp HHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHH
T ss_pred HHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccch
Confidence 9999853221 2234588999999999999999999999998865431
Q ss_pred ----------------------------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011714 187 ----------------------------------------------------KPNIQTYNCLLKGLCYVGRVEEAYEMLM 214 (479)
Q Consensus 187 ----------------------------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 214 (479)
+++..+|+.++.+|.+.|++++|.++|+
T Consensus 250 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 329 (597)
T 2xpi_A 250 EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITT 329 (597)
T ss_dssp HHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 1566677777777788888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 011714 215 NVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPD 294 (479)
Q Consensus 215 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 294 (479)
++.+.+.. +..++..++.++.+.|++++|..+++++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.. +.+
T Consensus 330 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 406 (597)
T 2xpi_A 330 KILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQF 406 (597)
T ss_dssp HHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCC
Confidence 77765432 56677777778888888888888887777653 3467788888899999999999999999887753 235
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHH
Q 011714 295 KISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYG 374 (479)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 374 (479)
..+|..++.++.+.|++++|.++|+++.+.+. .+..++..+...+. +.|++++|.++|+++.+..+. +..+|+
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~-~~~~~~ 479 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHM-----QLGNILLANEYLQSSYALFQY-DPLLLN 479 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHCCC-CHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCC-ChHHHH
Confidence 77889999999999999999999999887643 35667777777775 679999999999998876554 778899
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc----CCCCc--hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011714 375 IVIRTLGKGKKTDEALIHLHHAIEM----GHIPR--TITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLIT 448 (479)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (479)
.++.+|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++++|+.+++++.+.+ +.+..+|..++.
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~ 558 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIAL 558 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 9999999999999999999998876 55777 6789999999999999999999999998876 557889999999
Q ss_pred HHhccCCHhHHHHHHHHHHhCC
Q 011714 449 KLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 449 ~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
+|.+.|++++|.+.++++++..
T Consensus 559 ~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 559 VYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999998853
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-33 Score=276.11 Aligned_cols=375 Identities=10% Similarity=-0.016 Sum_probs=306.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 011714 82 NWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTIL 161 (479)
Q Consensus 82 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (479)
.+++..|+.++..+.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 357899999999999999999999999999854 678899999999999999999999999998653 6789999999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----
Q 011714 162 VNSLCKSGRLKEALEVLDQMGRI---------------GCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGL----- 221 (479)
Q Consensus 162 i~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----- 221 (479)
+.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|+++|+++.+.+.
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 99999999999999999953321 2344688999999999999999999999999876432
Q ss_pred -----------------------------------------------------------------CCCHHHHHHHHHHHH
Q 011714 222 -----------------------------------------------------------------KPDVYTYTAVMDGFC 236 (479)
Q Consensus 222 -----------------------------------------------------------------~~~~~~~~~li~~~~ 236 (479)
+++..+++.++.+|.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 145666777777777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 011714 237 KVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVS 316 (479)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 316 (479)
+.|++++|.++|+++.+.+.. +..++..++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|.+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 788888888888777765433 66677777888888888888888887776543 3467788888888889999999999
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 011714 317 IFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHA 396 (479)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (479)
+|+++.+.. +.+...+..+...+. +.|++++|.++|+++....+. +..+|..++.+|.+.|++++|.++|+++
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFA-----IEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 998887653 235667777777776 678899999999888876543 6778888899999999999999999988
Q ss_pred HHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCC--HhhHHHHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 397 IEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEH----AKIPS--RTSYDMLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 397 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
.+.. +.+..+|..++.+|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++++.+
T Consensus 468 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 468 YALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 8763 336788888999999999999999999988875 44566 6788899999999999999999999988765
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.4e-28 Score=227.62 Aligned_cols=381 Identities=12% Similarity=0.064 Sum_probs=312.8
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 011714 59 DRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFE 138 (479)
Q Consensus 59 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 138 (479)
.....|++++|+..++.+.+..+. +...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 345678999999999888776544 67778888888899999999999999888764 6678899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011714 139 ARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKN 218 (479)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (479)
|...|+++.+.. +.+...|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999998764 4456788999999999999999999999988764 44566778888889999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHH
Q 011714 219 DGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISY 298 (479)
Q Consensus 219 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 298 (479)
... .+..+|..+...+...|++++|...|+++++.... +...|..+...+...|++++|+..+++...... .+..++
T Consensus 164 ~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 240 (388)
T 1w3b_A 164 TQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVH 240 (388)
T ss_dssp HCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHH
T ss_pred hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHH
Confidence 642 35788899999999999999999999999886533 677888899999999999999999998877542 257788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011714 299 STLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIR 378 (479)
Q Consensus 299 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 378 (479)
..+..++...|++++|...++++.+.... +...+..+...+. ..|++++|...|+++.+..+. +..++..++.
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~-----~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 313 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALK-----EKGSVAEAEDCYNTALRLCPT-HADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHH-----HHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHH
Confidence 88999999999999999999998876422 4556666666665 679999999999998877544 6788889999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC
Q 011714 379 TLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEK 455 (479)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 455 (479)
.+...|++++|.+.++++.+.. +.+..++..+..++.+.|++++|+..++++.+.. +.+...|..+...+...|+
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 9999999999999999987752 3356788889999999999999999999998764 4466778888877766653
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=8.9e-32 Score=254.86 Aligned_cols=205 Identities=16% Similarity=0.231 Sum_probs=173.1
Q ss_pred HHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC---------hhh
Q 011714 69 RIDIFDSIKKDGTNWSV-SDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKND---------FFE 138 (479)
Q Consensus 69 a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~ 138 (479)
+..+.+.+.+.+...++ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34455666666655444 45888999999999999999999999999999999999999999987665 677
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011714 139 ARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKN 218 (479)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (479)
|.++|++|...|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 011714 219 DGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKE 273 (479)
Q Consensus 219 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (479)
.|+.||..||++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999888753
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=9.9e-32 Score=254.56 Aligned_cols=207 Identities=17% Similarity=0.215 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------h
Q 011714 102 ETAVKFFSEASSYGLAPNS-WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGR---------L 171 (479)
Q Consensus 102 ~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~ 171 (479)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777765554 46888999999999999999999999999999999999999999987664 6
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 011714 172 KEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEA 251 (479)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 251 (479)
++|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc
Q 011714 252 IERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKW 308 (479)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 308 (479)
.+.|+.||..+|+.||.+|++.|+.++|.+++++|.+.|..|+..||+.++..+...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999988753
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.8e-28 Score=227.18 Aligned_cols=364 Identities=16% Similarity=0.096 Sum_probs=317.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011714 91 LLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGR 170 (479)
Q Consensus 91 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 170 (479)
+...+.+.|++++|++.++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4566788999999999999988764 5567778888899999999999999999998764 5688999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 011714 171 LKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNE 250 (479)
Q Consensus 171 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 250 (479)
+++|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998864 456778999999999999999999999999886432 466778888999999999999999999
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH
Q 011714 251 AIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDE 330 (479)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 330 (479)
+.+... .+..+|..+...+...|++++|+..++++.+.+. .+...+..+...+...|++++|...+.+..+... .+.
T Consensus 161 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~ 237 (388)
T 1w3b_A 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHA 237 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCH
Confidence 988743 3678899999999999999999999999988653 3577899999999999999999999999987642 245
Q ss_pred HHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHH
Q 011714 331 RMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNN 410 (479)
Q Consensus 331 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 410 (479)
..+..+...+. ..|++++|...|+++...++. +..+|..++.++.+.|++++|++.++++.+.. +.+..++..
T Consensus 238 ~~~~~l~~~~~-----~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 310 (388)
T 1w3b_A 238 VVHGNLACVYY-----EQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNN 310 (388)
T ss_dssp HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHH-----HcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHH
Confidence 66666666665 679999999999999987654 67789999999999999999999999999863 457889999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 411 VIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
+...+...|++++|+..++++.+.. +.+..++..++.+|.+.|++++|.+.++++++.
T Consensus 311 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 311 LANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999875 557889999999999999999999999999874
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.8e-24 Score=209.24 Aligned_cols=398 Identities=12% Similarity=-0.007 Sum_probs=305.4
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 011714 58 VDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFF 137 (479)
Q Consensus 58 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 137 (479)
...+..|++++|+..|+.+.+.+ |+...|..+..++...|++++|+..|+++.+.+ +.+..++..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 90 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFA 90 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHH
Confidence 34567899999999999998765 588899999999999999999999999998765 566788999999999999999
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh-----------------------------------
Q 011714 138 EARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMG----------------------------------- 182 (479)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----------------------------------- 182 (479)
+|...|+.+...+ +++......++..+........+.+.+..+.
T Consensus 91 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
T 2gw1_A 91 DAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG 169 (514)
T ss_dssp HHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHh
Confidence 9999999998875 3344444444444443322222222221110
Q ss_pred hCCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHHHc
Q 011714 183 RIGC---------KPNIQTYNCLLKGLCY---VGRVEEAYEMLMNVKN-----DGL--------KPDVYTYTAVMDGFCK 237 (479)
Q Consensus 183 ~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~li~~~~~ 237 (479)
.... +.+...+......+.. .|++++|..+++++.+ ... +.+..++..+...+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence 0000 1124445555555554 8999999999999887 311 1235677888889999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 011714 238 VGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSI 317 (479)
Q Consensus 238 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 317 (479)
.|++++|...++++.+.... ...+..+..++...|++++|+..++++..... .+...+..+...+...|++++|...
T Consensus 250 ~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 326 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKD 326 (514)
T ss_dssp SSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999886433 77888899999999999999999999987643 3667888899999999999999999
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 011714 318 FKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAI 397 (479)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 397 (479)
++++.+.... +...+..+...+. ..|++++|...++.+....+. +...+..++..+...|++++|...++++.
T Consensus 327 ~~~~~~~~~~-~~~~~~~l~~~~~-----~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 327 FDKAKELDPE-NIFPYIQLACLAY-----RENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHTCSS-CSHHHHHHHHHTT-----TTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhChh-hHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999876433 3445555555554 679999999999998876544 56788899999999999999999999987
Q ss_pred HcCCC-Cc----hHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 398 EMGHI-PR----TITFNNVIQALCG---EGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 398 ~~~~~-p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
+.... ++ ...+..+..++.. .|++++|+..++++.+.. +.+...+..++.+|.+.|++++|.+.++++++.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 64221 11 3378888999999 999999999999998875 456788889999999999999999999999885
Q ss_pred C
Q 011714 470 G 470 (479)
Q Consensus 470 ~ 470 (479)
.
T Consensus 479 ~ 479 (514)
T 2gw1_A 479 A 479 (514)
T ss_dssp C
T ss_pred c
Confidence 4
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=8.2e-24 Score=201.09 Aligned_cols=363 Identities=13% Similarity=0.049 Sum_probs=273.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
.++..+..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 377889999999999999999999999998764 5678899999999999999999999999998875 45788899999
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 011714 163 NSLCKSGRLKEALEVLDQMGRIGCKPNI---QTYNCL------------LKGLCYVGRVEEAYEMLMNVKNDGLKPDVYT 227 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (479)
.+|.+.|++++|.+.|+++.+.. +.+. ..+..+ ...+...|++++|+..|+++.+.. +.+..+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 99999999999999999998764 3333 555555 444888999999999999988764 337788
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHH------
Q 011714 228 YTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTL------ 301 (479)
Q Consensus 228 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------ 301 (479)
+..++.+|...|++++|...|+++.+.. +.+..++..+..+|...|++++|+..++++..... .+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHH
Confidence 8899999999999999999999988763 33678899999999999999999999999886532 234444444
Q ss_pred ------HHHHHhcCChHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhh
Q 011714 302 ------LNGLLKWGKIRPAVSIFKEMVRFGFEVD---ERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGT 372 (479)
Q Consensus 302 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 372 (479)
...+...|++++|...++++.+...... ...+..+...+. +.|++++|...++.+....+. +...
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~a~~~~p~-~~~~ 331 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFS-----KDEKPVEAIRVCSEVLQMEPD-NVNA 331 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH-----TTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHhCcc-cHHH
Confidence 7788888999999999998887532210 234455555554 668899999999888776443 6678
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCc-hHHHHHHHHH------------HHcCC-----CHHHHHHHHHH-HHh
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIEMGHIPR-TITFNNVIQA------------LCGEG-----KIDKALLLLFL-MYE 433 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~-~~~ 433 (479)
|..++.+|...|++++|...++++.+. .|+ ...+..+..+ |...| +.+++.+.+++ ..+
T Consensus 332 ~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~ 409 (450)
T 2y4t_A 332 LKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ 409 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH
Confidence 888889999999999999999988874 343 4455555422 33334 55667777776 333
Q ss_pred CCC--CCC-------HhhHHHHHHHHhccCCHhHH
Q 011714 434 HAK--IPS-------RTSYDMLITKLDQLEKSYDA 459 (479)
Q Consensus 434 ~~~--~~~-------~~~~~~l~~~~~~~g~~~~A 459 (479)
... .++ ...+..+..+|...|+.+.+
T Consensus 410 ~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 410 WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 321 122 12556666666666665543
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.4e-23 Score=200.30 Aligned_cols=364 Identities=13% Similarity=-0.041 Sum_probs=283.4
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 011714 59 DRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFE 138 (479)
Q Consensus 59 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 138 (479)
..+..|+.++|+..++.+.+.++. +...|..+..++...|++++|+..|+++.+.+ +++......++..+........
T Consensus 48 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 125 (514)
T 2gw1_A 48 CYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSK 125 (514)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHH
Confidence 345789999999999999887654 78899999999999999999999999999876 4455555555544443322222
Q ss_pred HHHHHHHHH-----------------------------------hCCC---------CCCHHHHHHHHHHHHh---cCCh
Q 011714 139 ARKVIDCMF-----------------------------------DNGY---------HPNVTTFTILVNSLCK---SGRL 171 (479)
Q Consensus 139 a~~~~~~~~-----------------------------------~~~~---------~~~~~~~~~li~~~~~---~g~~ 171 (479)
+.+.+..+. .... +.+...+..+...+.. .|++
T Consensus 126 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (514)
T 2gw1_A 126 LKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESY 205 (514)
T ss_dssp HTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHH
T ss_pred HHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccH
Confidence 222221110 0000 1124455555555554 8999
Q ss_pred HHHHHHHHHHhh-----CCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 011714 172 KEALEVLDQMGR-----IGC--------KPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 238 (479)
Q Consensus 172 ~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 238 (479)
++|...++++.+ ... +.+..++..+...+...|++++|...++++.+.... ...+..+..++...
T Consensus 206 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~ 283 (514)
T 2gw1_A 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADR 283 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHC
Confidence 999999999987 311 224567888999999999999999999999886543 88899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 011714 239 GRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIF 318 (479)
Q Consensus 239 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 318 (479)
|++++|...++.+.+... .+...+..+...+...|++++|+..++++.+.... +...+..+...+...|++++|...+
T Consensus 284 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 361 (514)
T 2gw1_A 284 NDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLF 361 (514)
T ss_dssp SCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999988743 36778999999999999999999999999887533 5778889999999999999999999
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCC-C----hhhHHHHHHHHhc---CCCHHHHH
Q 011714 319 KEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVT-D----PGTYGIVIRTLGK---GKKTDEAL 390 (479)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~---~g~~~~A~ 390 (479)
+++.+.... +...+..+...+. ..|++++|...++.+....+.. + ...+..++.++.. .|++++|.
T Consensus 362 ~~~~~~~~~-~~~~~~~la~~~~-----~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~ 435 (514)
T 2gw1_A 362 SEAKRKFPE-APEVPNFFAEILT-----DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT 435 (514)
T ss_dssp HHHHHHSTT-CSHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred HHHHHHccc-CHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 999876432 3455555666664 6799999999999887643321 1 2378999999999 99999999
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 391 IHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 391 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
..++++.+.. +.+..++..+..++...|++++|...++++.+..
T Consensus 436 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 436 NLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 9999998864 3357788899999999999999999999999875
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=6.6e-23 Score=194.81 Aligned_cols=355 Identities=15% Similarity=0.085 Sum_probs=280.3
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 011714 104 AVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGR 183 (479)
Q Consensus 104 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 183 (479)
+...+.++.... +.+...+..+...+.+.|++++|..+|+.+.+.. +.+..+|..+..++...|++++|.+.|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344455544433 5678889999999999999999999999998764 55789999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHH------------HHHHHccCCHHHHHHHH
Q 011714 184 IGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDV---YTYTAV------------MDGFCKVGRSNEAMELL 248 (479)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~~~~~~a~~~~ 248 (479)
.+ +.+..++..+..+|.+.|++++|.+.|+++.+.... +. ..+..+ ...+...|++++|...|
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 75 557889999999999999999999999999976422 33 555555 44488999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 011714 249 NEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEV 328 (479)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 328 (479)
+++.+... .+...+..+..+|.+.|++++|+..++++.+.. +.+..++..+...+...|++++|...++++.+....
T Consensus 167 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 243 (450)
T 2y4t_A 167 DKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD- 243 (450)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 99988643 378889999999999999999999999998763 346889999999999999999999999999875322
Q ss_pred CHHHHHHH------------HHHHhcccchhhccHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHhcCCCHHHHHHH
Q 011714 329 DERMMNSL------------LRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTD----PGTYGIVIRTLGKGKKTDEALIH 392 (479)
Q Consensus 329 ~~~~~~~l------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 392 (479)
+...+..+ ...+. ..|++++|...|+.+....+. + ...|..++.++.+.|++++|+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELI-----RDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 22322222 34443 679999999999999876543 3 34788899999999999999999
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH------------HhccC-----C
Q 011714 393 LHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITK------------LDQLE-----K 455 (479)
Q Consensus 393 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~ 455 (479)
++++.+.. +.+..+|..+..+|...|++++|+..++++.+.. +.+...+..+..+ |...| +
T Consensus 318 ~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 318 CSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 99998753 3367899999999999999999999999999875 3456677777633 44445 5
Q ss_pred HhHHHHHHHH-HHhCCCCCCC
Q 011714 456 SYDACALYGA-ALKQGVIPQR 475 (479)
Q Consensus 456 ~~~A~~~~~~-~~~~~~~p~~ 475 (479)
.+++.+.|++ +++ ..||.
T Consensus 396 ~~~~~~~y~~~~l~--~~pd~ 414 (450)
T 2y4t_A 396 KQEIIKAYRKLALQ--WHPDN 414 (450)
T ss_dssp TTHHHHHHHHHHHH--SCGGG
T ss_pred HHHHHHHHHHHHHH--hCCCC
Confidence 6777888886 444 34553
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=5.8e-22 Score=192.79 Aligned_cols=394 Identities=13% Similarity=0.054 Sum_probs=293.4
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 011714 58 VDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFF 137 (479)
Q Consensus 58 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 137 (479)
...++.|++++|+..|+.+.+.++. ++..|..+..++...|++++|++.|+++.+.+ +.+..++..+..++...|+++
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~ 110 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFT 110 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHH
Confidence 3456789999999999999887654 78999999999999999999999999998875 667889999999999999999
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC------CCCCHHH-------------------
Q 011714 138 EARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIG------CKPNIQT------------------- 192 (479)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~------------------- 192 (479)
+|...|+.+ .. .|+ .....+..+...+...+|...++++.... ..|+...
T Consensus 111 ~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 111 DAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp HHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred HHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 999999743 22 222 22223444555566677888888775431 1122211
Q ss_pred -----------HHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHccCCHHHHHH
Q 011714 193 -----------YNCLLKGLCY--------VGRVEEAYEMLMNVKNDGLKPD-------VYTYTAVMDGFCKVGRSNEAME 246 (479)
Q Consensus 193 -----------~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~ 246 (479)
...+...+.. .|++++|..+++++.+.... + ..++..+...+...|++++|..
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 1222222211 24788899999988875432 2 2346667778888999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011714 247 LLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGF 326 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 326 (479)
.++.+.+.. |+...+..+...+...|++++|+..++++.+... .+..++..+...+...|++++|...++++.+...
T Consensus 265 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 341 (537)
T 3fp2_A 265 LLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341 (537)
T ss_dssp HHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 999998863 4577888899999999999999999999887643 3677888999999999999999999999887643
Q ss_pred CcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC----
Q 011714 327 EVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHI---- 402 (479)
Q Consensus 327 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---- 402 (479)
. +...+..+...+. ..|++++|...++.+....+. +...+..+...+...|++++|.+.++++.+....
T Consensus 342 ~-~~~~~~~la~~~~-----~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 342 E-NVYPYIQLACLLY-----KQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp T-CSHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred C-CHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 3 3345555555554 679999999999998877554 5678889999999999999999999988764211
Q ss_pred -CchHHHHHHHHHHHcC----------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 403 -PRTITFNNVIQALCGE----------GKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 403 -p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
.....+.....++... |++++|+..++++.+.. +.+...+..++.+|.+.|++++|.+.|+++++..
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 1112234445666677 99999999999998875 4577889999999999999999999999998854
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=2.8e-20 Score=180.84 Aligned_cols=358 Identities=15% Similarity=0.029 Sum_probs=268.8
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 011714 60 RIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEA 139 (479)
Q Consensus 60 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 139 (479)
....|+.++|+..++.+.+.++. +...+..+...+...|++++|+..|+. ... .|+. ....+..+...+....|
T Consensus 69 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~--~~~~--~~~~~~~~~~~~~~~~a 142 (537)
T 3fp2_A 69 YISTGDLEKVIEFTTKALEIKPD-HSKALLRRASANESLGNFTDAMFDLSV-LSL--NGDF--DGASIEPMLERNLNKQA 142 (537)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHH-Hhc--CCCC--ChHHHHHHHHHHHHHHH
Confidence 45789999999999999887654 788999999999999999999999973 322 2321 12223445555566778
Q ss_pred HHHHHHHHhCC------CCCCHH------------------------------HHHHHHHHHHh--------cCChHHHH
Q 011714 140 RKVIDCMFDNG------YHPNVT------------------------------TFTILVNSLCK--------SGRLKEAL 175 (479)
Q Consensus 140 ~~~~~~~~~~~------~~~~~~------------------------------~~~~li~~~~~--------~g~~~~a~ 175 (479)
...++.+.... ..|+.. ....+...+.. .|++++|.
T Consensus 143 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~ 222 (537)
T 3fp2_A 143 MKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKST 222 (537)
T ss_dssp HHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 88888875431 112211 22222222221 24789999
Q ss_pred HHHHHHhhCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 011714 176 EVLDQMGRIGCKPN-------IQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELL 248 (479)
Q Consensus 176 ~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 248 (479)
.+++++.+.. +.+ ..++..+...+...|++++|...+++..+. .|+...+..+...+...|++++|...+
T Consensus 223 ~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~ 299 (537)
T 3fp2_A 223 DMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFF 299 (537)
T ss_dssp HHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred HHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998764 223 335677778889999999999999999886 455888899999999999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 011714 249 NEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEV 328 (479)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 328 (479)
+++.+... .+..++..+...+...|++++|+..++++.+... .+...+..+...+...|++++|...++++.+....
T Consensus 300 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~- 376 (537)
T 3fp2_A 300 QKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT- 376 (537)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 99988743 3678899999999999999999999999988643 25678889999999999999999999999876432
Q ss_pred CHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHhcC----------CCHHHHHHHH
Q 011714 329 DERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVT-----DPGTYGIVIRTLGKG----------KKTDEALIHL 393 (479)
Q Consensus 329 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~----------g~~~~A~~~~ 393 (479)
+...+..+...+. ..|++++|...|+.+....+.. ....+.....++... |++++|+..+
T Consensus 377 ~~~~~~~l~~~~~-----~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~ 451 (537)
T 3fp2_A 377 LPEVPTFFAEILT-----DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451 (537)
T ss_dssp CTHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHH
Confidence 3445555655554 6799999999999887543211 112244455677777 9999999999
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 394 HHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 394 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
+++.+... .+...+..+..++...|++++|+..|+++.+..
T Consensus 452 ~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 452 TKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99998632 357789999999999999999999999999875
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=6.2e-20 Score=168.58 Aligned_cols=334 Identities=14% Similarity=0.052 Sum_probs=208.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45667788888888888888888888887754 5567788888888888888888888888888763 346778888888
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCC---CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011714 164 SLCKSGRLKEALEVLDQMGRIGCK---PNIQTYNCL------------LKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTY 228 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (479)
++...|++++|...+++..+.. + .+...+..+ ...+...|++++|++.++++.+... .+...+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHH
Confidence 8888888888888888887763 2 233444433 3444455555555555555444321 234444
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc
Q 011714 229 TAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKW 308 (479)
Q Consensus 229 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 308 (479)
..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.... +...+..+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~------ 229 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYK------ 229 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHH------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHH------
Confidence 444555555555555555555544432 123444444444555555555555555444432211 111111000
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHhcCC
Q 011714 309 GKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDP----GTYGIVIRTLGKGK 384 (479)
Q Consensus 309 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 384 (479)
.+. .......+...+. ..|++++|...++.+....+. +. ..+..+..++...|
T Consensus 230 -----------~~~------~~~~~~~~a~~~~-----~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~ 286 (359)
T 3ieg_A 230 -----------QVK------KLNKLIESAEELI-----RDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDE 286 (359)
T ss_dssp -----------HHH------HHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTT
T ss_pred -----------HHH------HHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHcc
Confidence 000 0000001122232 557888888888877765543 33 23556778888889
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 011714 385 KTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLE 454 (479)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (479)
++++|++.++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..+....+
T Consensus 287 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 287 KPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHH
Confidence 9999999999888753 2367788888888889999999999999988875 445666777776655443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=1.2e-19 Score=166.68 Aligned_cols=317 Identities=12% Similarity=0.051 Sum_probs=249.2
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 011714 119 NSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLK 198 (479)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 198 (479)
+...+..+...+...|++++|...|+.+.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45677888899999999999999999998764 4578899999999999999999999999998764 447788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHH------------HHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 011714 199 GLCYVGRVEEAYEMLMNVKNDGLK--PDVYTYTAV------------MDGFCKVGRSNEAMELLNEAIERGVTPNVVTFN 264 (479)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 264 (479)
.+...|++++|...+++..+.... .+...+..+ ...+...|++++|...++++.+... .+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHH
Confidence 999999999999999999876320 134444444 5778888999999999988887643 3677888
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccc
Q 011714 265 TLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKS 344 (479)
Q Consensus 265 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 344 (479)
.+..++...|++++|+..++++.+.. +.+...+..+...+...|++++|...+++..+.. |+.......
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~-------- 227 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAH-------- 227 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHH--------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHH--------
Confidence 88888889999999999998888764 3367788888888888899999988888887653 222211111
Q ss_pred chhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCch----HHHHHHHHHHHcCCC
Q 011714 345 WEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRT----ITFNNVIQALCGEGK 420 (479)
Q Consensus 345 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~ 420 (479)
+..+. .......++..+...|++++|+..++++.+.... +. ..+..+..++...|+
T Consensus 228 -------------~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 228 -------------YKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp -------------HHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTC
T ss_pred -------------HHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccC
Confidence 11111 1122334577888999999999999999886432 22 235567789999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 421 IDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 421 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
+++|+..++++.+.. +.+...+..++.+|...|++++|.+.|+++++..
T Consensus 288 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 288 PVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999875 5578899999999999999999999999999854
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=1.2e-17 Score=160.11 Aligned_cols=357 Identities=12% Similarity=0.011 Sum_probs=228.8
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCH
Q 011714 84 SVSDFNDLLMALVM----LNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCN----KNDFFEARKVIDCMFDNGYHPNV 155 (479)
Q Consensus 84 ~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 155 (479)
++..+..+...+.. .+++++|+..|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45555666666666 677777777777776643 45566666777766 677777777777776654 55
Q ss_pred HHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 011714 156 TTFTILVNSLCK----SGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCY----VGRVEEAYEMLMNVKNDGLKPDVYT 227 (479)
Q Consensus 156 ~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (479)
..+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|+++|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 666666666666 667777777777776654 45566666666665 667777777777776653 5566
Q ss_pred HHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHhHHH
Q 011714 228 YTAVMDGFCK----VGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCK----EGTPMKGVGLLKLMKKRNCLPDKISYS 299 (479)
Q Consensus 228 ~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 299 (479)
+..+...|.. .++.++|.+.|++..+.+ +...+..+...|.. .+++++|+.++++..+.| +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6666666666 677777777777776653 44556666666665 667777777777776654 345555
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHH
Q 011714 300 TLLNGLLK----WGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGI 375 (479)
Q Consensus 300 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 375 (479)
.+...+.. .++.++|..+|++..+.| +......+-..+........+++++|...|++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 55555655 677777777777776543 2233333333332110011256777777777766653 3455666
Q ss_pred HHHHHhcCC---CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011714 376 VIRTLGKGK---KTDEALIHLHHAIEMGHIPRTITFNNVIQALCG----EGKIDKALLLLFLMYEHAKIPSRTSYDMLIT 448 (479)
Q Consensus 376 l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (479)
+...|...| ++++|++++++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+..|..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666666555 6677777777776642 45566666666666 677777777777777654 4566666777
Q ss_pred HHhc----cCCHhHHHHHHHHHHhCC
Q 011714 449 KLDQ----LEKSYDACALYGAALKQG 470 (479)
Q Consensus 449 ~~~~----~g~~~~A~~~~~~~~~~~ 470 (479)
.|.. .++.++|...|+++++.+
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 7766 677777777777777665
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=6.3e-19 Score=159.89 Aligned_cols=301 Identities=12% Similarity=-0.010 Sum_probs=174.1
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 011714 117 APNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCL 196 (479)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (479)
+.+...+..+...+...|++++|.++++.+.+.. +.+...+..++.++...|++++|..+++++.+.. +.+..+|..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3444455555555666666666666666665543 3344455555555666666666666666665543 3345556666
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 011714 197 LKGLCYVG-RVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGT 275 (479)
Q Consensus 197 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 275 (479)
...+...| ++++|...+++..+... .+...+..+..++...|++++|...++++.+.... +...+..+...|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhh
Confidence 66666666 66666666666655432 23455666666666666666666666666654322 34445556666666777
Q ss_pred hhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHH
Q 011714 276 PMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAY 355 (479)
Q Consensus 276 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 355 (479)
+++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... .+.
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------------~~~----- 228 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA--------------------IGN----- 228 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT--------------------TSC-----
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh--------------------ccc-----
Confidence 777777776666553 224566666666667777777777666665542100 000
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 356 QVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
......+...+..+..++...|++++|+..++++.+... .+...+..+..++...|++++|...++++.+..
T Consensus 229 -------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 229 -------EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp -------SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred -------cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 000112334566666667777777777777776665432 245566666677777777777777777666654
Q ss_pred CCCCHhhHHHHHHHH-hccCCH
Q 011714 436 KIPSRTSYDMLITKL-DQLEKS 456 (479)
Q Consensus 436 ~~~~~~~~~~l~~~~-~~~g~~ 456 (479)
+.+...+..+..++ ...|+.
T Consensus 301 -p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 301 -RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp -SCCHHHHHHHHHHHHTTTTC-
T ss_pred -CCchHHHHHHHHHHHHHhCch
Confidence 33556666666666 344443
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=1.1e-16 Score=153.45 Aligned_cols=355 Identities=14% Similarity=0.038 Sum_probs=292.3
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cC
Q 011714 63 ASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVM----LNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCN----KN 134 (479)
Q Consensus 63 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 134 (479)
.++.++|+..|+...+.| ++..+..|...+.. .+++++|++.|++..+.| +...+..|...|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 577899999999888764 56788889999998 999999999999998865 66778888888988 88
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCH
Q 011714 135 DFFEARKVIDCMFDNGYHPNVTTFTILVNSLCK----SGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCY----VGRV 206 (479)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 206 (479)
++++|...|++..+.| +...+..|..+|.. .++.++|++.|++..+.| +...+..+...|.. .++.
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH
Confidence 9999999999999875 67888888888887 789999999999998875 67888889999988 8999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChhh
Q 011714 207 EEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK----VGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCK----EGTPMK 278 (479)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 278 (479)
++|.++|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+..+...|.. .+++++
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 99999999998865 56777888888876 889999999999998864 55677778888887 899999
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHH
Q 011714 279 GVGLLKLMKKRNCLPDKISYSTLLNGLLKW-----GKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLED 353 (479)
Q Consensus 279 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 353 (479)
|+.++++..+.| +...+..+...+... +++++|..++++..+.+. ......+-..+... ...++.++
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~~--g~~~~~~~ 349 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD---ATAQANLGAIYFRL--GSEEEHKK 349 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHS--CCHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhC--CCcccHHH
Confidence 999999998875 566777888888877 899999999999998753 33444444444321 12348999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHc----CCCHHHHH
Q 011714 354 AYQVFEKMTKKVSVTDPGTYGIVIRTLGK----GKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCG----EGKIDKAL 425 (479)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~ 425 (479)
|...|++..+.+ ++..+..+...|.. .+++++|+++|++..+.+ +...+..+...|.. .+++++|.
T Consensus 350 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 423 (490)
T 2xm6_A 350 AVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAW 423 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999998763 56788899999988 899999999999999864 56778888888887 89999999
Q ss_pred HHHHHHHhCCCC-C-CHhhHHHHHHH
Q 011714 426 LLLFLMYEHAKI-P-SRTSYDMLITK 449 (479)
Q Consensus 426 ~~~~~~~~~~~~-~-~~~~~~~l~~~ 449 (479)
..|++..+.+.. | +......+...
T Consensus 424 ~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 424 AWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 999999988632 1 33444444433
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=1.2e-16 Score=154.67 Aligned_cols=402 Identities=9% Similarity=0.002 Sum_probs=291.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH-HHhc
Q 011714 55 QRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRC-YCNK 133 (479)
Q Consensus 55 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 133 (479)
..+......++.++|..+|+.+.+..+. +...|..++..+.+.|++++|..+|+++.+. .|+...|...+.. ....
T Consensus 17 ~~l~~~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~ 93 (530)
T 2ooe_A 17 SILIREAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETK 93 (530)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHc
Confidence 3344445678999999999999987544 8889999999999999999999999999976 4688888877753 3456
Q ss_pred CChhhHHH----HHHHHHhC-CCC-CCHHHHHHHHHHHHh---------cCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 011714 134 NDFFEARK----VIDCMFDN-GYH-PNVTTFTILVNSLCK---------SGRLKEALEVLDQMGRIGCKPNIQTYNCLLK 198 (479)
Q Consensus 134 ~~~~~a~~----~~~~~~~~-~~~-~~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 198 (479)
|+.+.|.+ +|+..... |.. ++...|...+....+ .|+++.|..+|++..+....+....|.....
T Consensus 94 ~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~ 173 (530)
T 2ooe_A 94 GKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNK 173 (530)
T ss_dssp TTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Confidence 78877766 67766542 433 356788888877655 6899999999999988321111234443322
Q ss_pred HH-------------HhcCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHcc----CCH---
Q 011714 199 GL-------------CYVGRVEEAYEMLMNVK------NDG---LKPD--------VYTYTAVMDGFCKV----GRS--- 241 (479)
Q Consensus 199 ~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~li~~~~~~----~~~--- 241 (479)
.. .+.+++..|..++..+. +.. ++|+ ...|...+...... ++.
T Consensus 174 ~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~ 253 (530)
T 2ooe_A 174 YEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLI 253 (530)
T ss_dssp HHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHH
T ss_pred HHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhH
Confidence 11 12355677777776532 111 2343 24555555443322 232
Q ss_pred -HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-------cCChh-------hHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 011714 242 -NEAMELLNEAIERGVTPNVVTFNTLFNGYCK-------EGTPM-------KGVGLLKLMKKRNCLPDKISYSTLLNGLL 306 (479)
Q Consensus 242 -~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 306 (479)
+.+..+|++++... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.
T Consensus 254 ~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~ 332 (530)
T 2ooe_A 254 TKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 47788999988763 3367788888888875 79887 89999999986323346788999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCcC-H-HHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HhcC
Q 011714 307 KWGKIRPAVSIFKEMVRFGFEVD-E-RMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRT-LGKG 383 (479)
Q Consensus 307 ~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 383 (479)
+.|++++|..+|+++++. .|+ . ..+......+. +.|+++.|..+|++..+..+. +...|...+.. +...
T Consensus 333 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~-----~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFAR-----RAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCS 404 (530)
T ss_dssp HTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHH-----HhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHc
Confidence 999999999999999985 343 2 35555555543 679999999999999876433 33333332222 3468
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CC--CHhhHHHHHHHHhccCCHhHHH
Q 011714 384 KKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAK-IP--SRTSYDMLITKLDQLEKSYDAC 460 (479)
Q Consensus 384 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~ 460 (479)
|+.++|..+|+++++.. +.+...|..++..+.+.|+.++|..+|++...... .| ....|...+......|+.+.+.
T Consensus 405 ~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred CChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999998753 23578899999999999999999999999998742 22 2347888888888899999999
Q ss_pred HHHHHHHhC
Q 011714 461 ALYGAALKQ 469 (479)
Q Consensus 461 ~~~~~~~~~ 469 (479)
.+++++++.
T Consensus 484 ~~~~r~~~~ 492 (530)
T 2ooe_A 484 KVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998774
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.4e-18 Score=157.62 Aligned_cols=286 Identities=9% Similarity=-0.062 Sum_probs=207.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...|..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 356667788888888899999999999988764 5566677778888888999999999999888764 44678888888
Q ss_pred HHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 011714 163 NSLCKSG-RLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 241 (479)
Q Consensus 163 ~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 241 (479)
..+...| ++++|.+.|++..+.. +.+..+|..+...+...|++++|...+++..+.... +...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 8888888 8999999999888764 445778888889999999999999999988876432 456677788888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC--------CCCCHhHHHHHHHHHHhcCChHH
Q 011714 242 NEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN--------CLPDKISYSTLLNGLLKWGKIRP 313 (479)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~ 313 (479)
++|...++++.+... .+...+..+...+...|++++|...++++.+.. .+....++..+..++...|++++
T Consensus 176 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999998887643 367788888899999999999999988886531 12234567777777777777777
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011714 314 AVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTL 380 (479)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (479)
|...++++.+.... +...+..+...+. ..|++++|...|++..+..+. +...+..+..++
T Consensus 255 A~~~~~~a~~~~~~-~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 314 (330)
T 3hym_B 255 ALDYHRQALVLIPQ-NASTYSAIGYIHS-----LMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHSTT-CSHHHHHHHHHHH-----HHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcc-chHHHHHHHHHHH-----HhccHHHHHHHHHHHHccCCC-chHHHHHHHHHH
Confidence 77777777654321 2223333333332 345555555555554443322 334444444444
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=3e-19 Score=164.80 Aligned_cols=282 Identities=15% Similarity=0.051 Sum_probs=173.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011714 157 TFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFC 236 (479)
Q Consensus 157 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 236 (479)
.+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|+..++++.+.. +.+..++..+..++.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34445555555555555555555555443 3344455555555555555555555555554432 124444555555555
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 011714 237 KVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVS 316 (479)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 316 (479)
..|++++|...++++.+.... +...+..+... ... ..+ ...+. .+..+...|++++|..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~-----------~~~-~~~~~-~~~~~~~~~~~~~A~~ 202 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AGG-----------AGL-GPSKR-ILGSLLSDSLFLEVKE 202 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------------------C-TTHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hhh-----------hcc-cHHHH-HHHHHhhcccHHHHHH
Confidence 555555555555555443211 11111100000 000 000 00011 2233337788888888
Q ss_pred HHHHHHHcCCCc-CHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHH
Q 011714 317 IFKEMVRFGFEV-DERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHH 395 (479)
Q Consensus 317 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 395 (479)
.++++.+..... +...+..+...+. ..|++++|...|+++....+. +...|..++.++...|++++|+..+++
T Consensus 203 ~~~~a~~~~p~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 276 (368)
T 1fch_A 203 LFLAAVRLDPTSIDPDVQCGLGVLFN-----LSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRR 276 (368)
T ss_dssp HHHHHHHHSTTSCCHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcCcccHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888887654321 3566666666665 668888898888888776544 567889999999999999999999999
Q ss_pred HHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC----------CHhhHHHHHHHHhccCCHhHHHHHHHH
Q 011714 396 AIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIP----------SRTSYDMLITKLDQLEKSYDACALYGA 465 (479)
Q Consensus 396 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 465 (479)
+.+.. +.+...+..+..++...|++++|+..++++.+..... ...+|..++.+|...|++++|..++++
T Consensus 277 al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 277 ALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 88763 2357788899999999999999999999988753211 167899999999999999999998876
Q ss_pred HHh
Q 011714 466 ALK 468 (479)
Q Consensus 466 ~~~ 468 (479)
.++
T Consensus 356 ~l~ 358 (368)
T 1fch_A 356 DLS 358 (368)
T ss_dssp CHH
T ss_pred HHH
Confidence 543
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=1e-16 Score=155.21 Aligned_cols=384 Identities=10% Similarity=0.039 Sum_probs=276.1
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 011714 73 FDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYH 152 (479)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 152 (479)
++...+.++. +...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++.+.. .
T Consensus 2 le~al~~~P~-~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEENPY-DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHCTT-CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhCCC-CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 3444444433 8889999998 478999999999999999764 667889999999999999999999999999976 3
Q ss_pred CCHHHHHHHHHHH-HhcCChHHHHH----HHHHHhh-CCCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 011714 153 PNVTTFTILVNSL-CKSGRLKEALE----VLDQMGR-IGCK-PNIQTYNCLLKGLCY---------VGRVEEAYEMLMNV 216 (479)
Q Consensus 153 ~~~~~~~~li~~~-~~~g~~~~a~~----~~~~~~~-~~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 216 (479)
|+...|..++... ...|+.++|.+ +|++... .|.. ++...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6888888777533 35677776665 7776654 2433 356788888876655 68899999999999
Q ss_pred HHCCCCCCHHHHHHHHHHH-------------HccCCHHHHHHHHHHHH------HCC---CCCC--------HhhHHHH
Q 011714 217 KNDGLKPDVYTYTAVMDGF-------------CKVGRSNEAMELLNEAI------ERG---VTPN--------VVTFNTL 266 (479)
Q Consensus 217 ~~~~~~~~~~~~~~li~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l 266 (479)
.+.........|....... ...+++..|..++.+.. +.. ++|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8731111123443332211 13456677777776532 211 2333 2455555
Q ss_pred HHHHHhc----CCh----hhHHHHHHHHHhCCCCCCHhHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHc
Q 011714 267 FNGYCKE----GTP----MKGVGLLKLMKKRNCLPDKISYSTLLNGLLK-------WGKIR-------PAVSIFKEMVRF 324 (479)
Q Consensus 267 ~~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~ 324 (479)
+...... ++. .+++.+|++..... +.+...|..++..+.. .|+++ +|..++++.++.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 5443332 232 36778898887753 3367788888877765 79987 899999998862
Q ss_pred CCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 011714 325 GFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDP-GTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIP 403 (479)
Q Consensus 325 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 403 (479)
-.+.+...+..+...+. ..|++++|..+|+++....+. +. ..|..++..+.+.|++++|.++|+++.+... .
T Consensus 316 ~~p~~~~l~~~~~~~~~-----~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~ 388 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEE-----SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-T 388 (530)
T ss_dssp TCSSCHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-C
T ss_pred hCcccHHHHHHHHHHHH-----hcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-C
Confidence 12234556666666554 679999999999999986443 33 5899999999999999999999999987532 2
Q ss_pred chHHHHHHHHH-HHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 404 RTITFNNVIQA-LCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 404 ~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
+...|...... +...|++++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|+++++.+
T Consensus 389 ~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 389 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 33334333322 336899999999999999875 4578899999999999999999999999999874
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=2e-18 Score=159.19 Aligned_cols=307 Identities=12% Similarity=-0.008 Sum_probs=197.1
Q ss_pred HHHhcCCHHHHHH-HHHHHHhCCC-CC--CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011714 94 ALVMLNEQETAVK-FFSEASSYGL-AP--NSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSG 169 (479)
Q Consensus 94 ~~~~~~~~~~A~~-~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 169 (479)
++...|++++|+. .|++..+... .| +...+..+...+.+.|++++|...++++.+.. +.+..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 5566789999998 8887664421 11 35678899999999999999999999999875 557889999999999999
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 011714 170 RLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLN 249 (479)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 249 (479)
++++|.+.++++.+.. +.+..++..+...+...|++++|...++++...... +...+..+... ..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------ 177 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------ 177 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh------
Confidence 9999999999998875 567889999999999999999999999999986432 22222211000 00
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 011714 250 EAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLP-DKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEV 328 (479)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 328 (479)
. ..+ ...+..+...+ ..|++++|+..++++.+..... +..++..+...+...|++++|...++++.+.. +.
T Consensus 178 -~----~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 -G----AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred -h----hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 000 00111111222 5566666666666665543211 35556666666666666666666666665542 12
Q ss_pred CHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-----
Q 011714 329 DERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIP----- 403 (479)
Q Consensus 329 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----- 403 (479)
+...+..+...+. ..|++++|...|+++....+. +...+..+..++...|++++|...++++.+.....
T Consensus 250 ~~~~~~~l~~~~~-----~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 323 (368)
T 1fch_A 250 DYLLWNKLGATLA-----NGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG 323 (368)
T ss_dssp CHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred CHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccc
Confidence 3344444444443 456677777777666655433 55677778888888888888888888777542111
Q ss_pred -----chHHHHHHHHHHHcCCCHHHHHHHHHH
Q 011714 404 -----RTITFNNVIQALCGEGKIDKALLLLFL 430 (479)
Q Consensus 404 -----~~~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (479)
...+|..+..++...|++++|..++++
T Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 324 EGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred cccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 156788888888888888888887764
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=8.7e-19 Score=158.45 Aligned_cols=283 Identities=12% Similarity=0.099 Sum_probs=138.3
Q ss_pred CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 011714 64 SPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVI 143 (479)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (479)
+++++|.++++.+. ++.+|..++.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|+..+
T Consensus 17 ~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 17 GNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 66899999999883 345899999999999999999999965 357779999999999999999999988
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011714 144 DCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKP 223 (479)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 223 (479)
+...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 877764 4568889999999999999999998884 367789999999999999999999999977
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011714 224 DVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLN 303 (479)
Q Consensus 224 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 303 (479)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.....++.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~ 215 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELIN 215 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHH
Confidence 37899999999999999999999988 27899999999999999999996554432 224444557889
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCC------CChhhHHHHH
Q 011714 304 GLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSV------TDPGTYGIVI 377 (479)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~ 377 (479)
.|.+.|.+++|..+++..+... +-....+..+--.+++. +.+++.+.++.|..-. +.. -+...|..+.
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky---~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF---KPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT---CHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999988654 45567777777777654 5666777776665221 111 1457899999
Q ss_pred HHHhcCCCHHHHHHHH
Q 011714 378 RTLGKGKKTDEALIHL 393 (479)
Q Consensus 378 ~~~~~~g~~~~A~~~~ 393 (479)
-.|...++++.|....
T Consensus 290 ~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 290 FLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHhhchHHHHHHHH
Confidence 9999999999998743
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=5.7e-17 Score=154.86 Aligned_cols=364 Identities=13% Similarity=-0.009 Sum_probs=213.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC---
Q 011714 81 TNWSVSDFNDLLMALVMLNEQETAVKFFSEASSY--------GLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDN--- 149 (479)
Q Consensus 81 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 149 (479)
....+..||.|...+...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...+++..+.
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3445778999999999999999999999987532 11334678999999999999999999999887642
Q ss_pred --C--CCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHhhCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC
Q 011714 150 --G--YHPNVTTFTILVNSLCKS--GRLKEALEVLDQMGRIGCKPNIQTYNCLLKG---LCYVGRVEEAYEMLMNVKNDG 220 (479)
Q Consensus 150 --~--~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~ 220 (479)
+ ......++..+..++... +++++|++.|++..+.. +-+...+..+..+ +...++.++|++.+++..+..
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1 112356666666555554 56899999999988764 3355555555554 345677788999998887754
Q ss_pred CCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHh
Q 011714 221 LKPDVYTYTAVMDGFCK----VGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKI 296 (479)
Q Consensus 221 ~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 296 (479)
. .+..++..+...+.. .+++++|.+++++...... .+...+..+...|...|++++|+..+++..+... -+..
T Consensus 206 p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~ 282 (472)
T 4g1t_A 206 P-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAY 282 (472)
T ss_dssp S-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHH
T ss_pred C-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHH
Confidence 2 256666665555444 4678899999998887643 3677888999999999999999999999887642 2455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHH
Q 011714 297 SYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIV 376 (479)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 376 (479)
++..+..+|...+.... ... ...... .. ...+..+.|...++.....++. +...+..+
T Consensus 283 ~~~~lg~~y~~~~~~~~---------~~~-~~~~~~----~~-------~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 340 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVM---------NLR-ENGMYG----KR-------KLLELIGHAVAHLKKADEANDN-LFRVCSIL 340 (472)
T ss_dssp HHHHHHHHHHHHHHHHH---------HC-------C----HH-------HHHHHHHHHHHHHHHHHHHCTT-TCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhh---------hHH-HHHHHH----HH-------HHHhhHHHHHHHHHHHhhcCCc-hhhhhhhH
Confidence 66666555432211000 000 000000 00 0112334444445444443322 33444555
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCchH--HHHHHHH-HHHcCCCHHHHHHHHHHHHh--------------------
Q 011714 377 IRTLGKGKKTDEALIHLHHAIEMGHIPRTI--TFNNVIQ-ALCGEGKIDKALLLLFLMYE-------------------- 433 (479)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~-------------------- 433 (479)
...+...|++++|++.|+++++....+... .+..+.. .....|++++|+..+++..+
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~ 420 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAK 420 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence 555555555555555555554432221110 1111111 12244555555555544443
Q ss_pred ----CCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCC
Q 011714 434 ----HAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGV 471 (479)
Q Consensus 434 ----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 471 (479)
.+ +.+..+|..++.+|...|++++|++.|+++++.|-
T Consensus 421 ~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 421 MRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 32 45678899999999999999999999999999754
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=1.6e-18 Score=159.67 Aligned_cols=266 Identities=12% Similarity=0.006 Sum_probs=176.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 011714 192 TYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYC 271 (479)
Q Consensus 192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 271 (479)
.+..+...+.+.|++++|+.+|+++.+... .+..++..+..++...|++++|+..|+++.+... .+..++..+..+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 355555555666666666666666555432 2455556666666666666666666666555432 24555666666666
Q ss_pred hcCChhhHHHHHHHHHhCCCC---------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHh
Q 011714 272 KEGTPMKGVGLLKLMKKRNCL---------PDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFE-VDERMMNSLLRGLC 341 (479)
Q Consensus 272 ~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 341 (479)
..|++++|+..++++.+.... .....+..+...+...|++++|...++++.+.... ++...+..+...+.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 666666666666665543210 01223344567778888888888888888776432 14566666666664
Q ss_pred cccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCH
Q 011714 342 MKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKI 421 (479)
Q Consensus 342 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 421 (479)
..|++++|...|+++....+. +..+|..++.++...|++++|+..++++.+.. +.+..++..+..+|...|++
T Consensus 225 -----~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 225 -----LSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp -----HHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred -----HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 668889999998888876554 67789999999999999999999999998863 23577889999999999999
Q ss_pred HHHHHHHHHHHhCCCC-----------CCHhhHHHHHHHHhccCCHhHHHHHHHHH
Q 011714 422 DKALLLLFLMYEHAKI-----------PSRTSYDMLITKLDQLEKSYDACALYGAA 466 (479)
Q Consensus 422 ~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (479)
++|+..++++.+.... .+...|..+..++...|+.+.+..+.++.
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 9999999998875311 13678999999999999999988887653
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=9.2e-18 Score=154.63 Aligned_cols=236 Identities=14% Similarity=0.048 Sum_probs=182.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
.+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 355668888999999999999999999988765 5678889999999999999999999999988764 44688899999
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 011714 163 NSLCKSGRLKEALEVLDQMGRIGCKPN-----------IQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLK-PDVYTYTA 230 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 230 (479)
.+|...|++++|.+.++++.+.. |+ ...+..+...+...|++++|+.+++++.+.... ++..++..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 99999999999999999887653 22 222334577888888888999888888876422 15778888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCC
Q 011714 231 VMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGK 310 (479)
Q Consensus 231 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 310 (479)
+...+...|++++|...|+++.+... .+..+|..+..+|...|++++|+..++++.+.. +.+..++..+..++...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 88888888888899888888887643 367788888888888888888888888887753 2257778888888888888
Q ss_pred hHHHHHHHHHHHHc
Q 011714 311 IRPAVSIFKEMVRF 324 (479)
Q Consensus 311 ~~~a~~~~~~~~~~ 324 (479)
+++|...++++.+.
T Consensus 297 ~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 297 YREAVSNFLTALSL 310 (365)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888887753
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=1e-16 Score=141.91 Aligned_cols=259 Identities=12% Similarity=0.073 Sum_probs=209.1
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 011714 57 FVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDF 136 (479)
Q Consensus 57 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (479)
+-+.+-.|+...|+..++.+....+.........+.+++...|+++.|+..++. . -+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 345667899999999988765443332234556678999999999999987654 2 367788899999999999999
Q ss_pred hhHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011714 137 FEARKVIDCMFDNGY-HPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMN 215 (479)
Q Consensus 137 ~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 215 (479)
++|.+.++++...+. +-+...+..+..++...|++++|++.+++ +.+..++..++..+.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999988764 44677788888999999999999999987 46888999999999999999999999999
Q ss_pred HHHCCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 011714 216 VKNDGLKPDVYT---YTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCL 292 (479)
Q Consensus 216 ~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 292 (479)
+.+.. |+... ...++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...+++..+...
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p- 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS- 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence 98864 44321 1233455556699999999999999873 45888999999999999999999999999988653
Q ss_pred CCHhHHHHHHHHHHhcCChHH-HHHHHHHHHHcCCCcCHH
Q 011714 293 PDKISYSTLLNGLLKWGKIRP-AVSIFKEMVRFGFEVDER 331 (479)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~ 331 (479)
-+..++..++..+...|+.++ +.++++++.+. .|+..
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~ 269 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHP 269 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCCh
Confidence 367889999999999999876 67899988875 44443
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=5.5e-17 Score=146.82 Aligned_cols=259 Identities=10% Similarity=0.010 Sum_probs=177.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 011714 56 RFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKND 135 (479)
Q Consensus 56 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (479)
........++.++|+.+|+.+.+..+. +...+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+
T Consensus 27 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 27 EGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCC
Confidence 334455677888888888887766544 67777778888888888888888888877654 4567777788888888888
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 011714 136 FFEARKVIDCMFDNGYHPNVTTFTIL--------------VN-SLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGL 200 (479)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (479)
+++|.+.++.+.+.. +.+...+..+ .. .+...|++++|.+.++++.+.. +.+..++..+...+
T Consensus 105 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 182 (327)
T 3cv0_A 105 ANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLY 182 (327)
T ss_dssp HHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 888888888887653 2233333333 22 3556677777777777777654 34667777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHH
Q 011714 201 CYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGV 280 (479)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 280 (479)
...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+..++...|++++|.
T Consensus 183 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHHHHH
Confidence 77777777777777776653 22566777777777777777777777777766532 25666777777777777777777
Q ss_pred HHHHHHHhCCCCC-----------CHhHHHHHHHHHHhcCChHHHHHHHHH
Q 011714 281 GLLKLMKKRNCLP-----------DKISYSTLLNGLLKWGKIRPAVSIFKE 320 (479)
Q Consensus 281 ~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 320 (479)
..++++....... +...+..+..++...|++++|..++++
T Consensus 261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 7777776543211 355666777777777777777776654
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=4.7e-17 Score=147.29 Aligned_cols=235 Identities=9% Similarity=-0.052 Sum_probs=165.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
+...+..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 45567778888889999999999999988764 5577888888899999999999999999988764 457788888899
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011714 164 SLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCL--------------LK-GLCYVGRVEEAYEMLMNVKNDGLKPDVYTY 228 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (479)
.+...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++++.+... .+...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHH
Confidence 9999999999999999888763 2222233222 22 25566677777777777766532 256667
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc
Q 011714 229 TAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKW 308 (479)
Q Consensus 229 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 308 (479)
..+...+...|++++|...++++.+... .+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 7777777777777777777777766532 245666677777777777777777777766543 22455666666667777
Q ss_pred CChHHHHHHHHHHHHc
Q 011714 309 GKIRPAVSIFKEMVRF 324 (479)
Q Consensus 309 ~~~~~a~~~~~~~~~~ 324 (479)
|++++|...++++.+.
T Consensus 254 g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYM 269 (327)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh
Confidence 7777777777666543
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=2.2e-16 Score=139.80 Aligned_cols=272 Identities=13% Similarity=0.066 Sum_probs=195.4
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 011714 164 SLCKSGRLKEALEVLDQMGRIGCKPNI--QTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 241 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 241 (479)
-....|++..|+..++..... .|+. .....+.++|...|+++.|+..++. .-.|+..++..+...+...++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 344568888888887776543 3332 3445667888888888888876644 1355677778888888888888
Q ss_pred HHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 011714 242 NEAMELLNEAIERGVTP-NVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKE 320 (479)
Q Consensus 242 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 320 (479)
++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888887765433 455666677888888888888888876 34677888888888888999999888888
Q ss_pred HHHcCCCcCHHHHH---HHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 011714 321 MVRFGFEVDERMMN---SLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAI 397 (479)
Q Consensus 321 ~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 397 (479)
+.+.. |+..... ..+..+. ..|++++|..+|+++....+. +...++.+..++.+.|++++|...+++++
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~-----~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAA-----GGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHH-----CTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhhC--cCcHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88763 4432111 1222221 448899999999999887554 77889999999999999999999999988
Q ss_pred HcCCCCchHHHHHHHHHHHcCCCHHH-HHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHH
Q 011714 398 EMGHIPRTITFNNVIQALCGEGKIDK-ALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACA 461 (479)
Q Consensus 398 ~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 461 (479)
+... -+..++..++.++...|+.++ +.++++++.+.. +.++.+ .+...+.+.++++..
T Consensus 228 ~~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P~~~~~----~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 228 DKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-RSHPFI----KEYRAKENDFDRLVL 286 (291)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHH----HHHHHHHHHHHHHHH
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CCChHH----HHHHHHHHHHHHHHH
Confidence 7642 367788889989999999876 578999988875 223332 233444445555443
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=8.5e-18 Score=152.03 Aligned_cols=282 Identities=14% Similarity=0.101 Sum_probs=133.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011714 97 MLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALE 176 (479)
Q Consensus 97 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 176 (479)
+.|+.++|.++++++. . ..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~----~--~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN----E--PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC----C--hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5678999999999983 2 349999999999999999999999653 577899999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 011714 177 VLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGV 256 (479)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 256 (479)
+++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88877764 4567889999999999999999998884 367789999999999999999999999876
Q ss_pred CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHH
Q 011714 257 TPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSL 336 (479)
Q Consensus 257 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 336 (479)
..|..++.++.+.|++++|++.++++ .++.+|..++.+|...|+++.|......+ .........+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 47999999999999999999999988 27899999999999999999996655442 2333334566
Q ss_pred HHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCCC------chHHH
Q 011714 337 LRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGK--KTDEALIHLHHAIEMGHIP------RTITF 408 (479)
Q Consensus 337 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p------~~~~~ 408 (479)
+..|. +.|.+++|..+++...... ......|+-+..+|++-+ +..+.++.|.. ..+++| +...|
T Consensus 214 v~~Ye-----k~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w 285 (449)
T 1b89_A 214 INYYQ-----DRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLW 285 (449)
T ss_dssp HHHHH-----HTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCH
T ss_pred HHHHH-----HCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHH
Confidence 67774 7899999999999988765 335678888888888753 34445554432 112222 35678
Q ss_pred HHHHHHHHcCCCHHHHHHH
Q 011714 409 NNVIQALCGEGKIDKALLL 427 (479)
Q Consensus 409 ~~l~~~~~~~g~~~~a~~~ 427 (479)
..+...|.+.++++.|...
T Consensus 286 ~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 286 AELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhhchHHHHHHH
Confidence 8999999999999988764
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=168.10 Aligned_cols=151 Identities=13% Similarity=0.129 Sum_probs=127.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASS---YGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTI 160 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (479)
-..+||++|.+|++.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456899999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHH
Q 011714 161 LVNSLCKSGRL-KEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPD------VYTYTAVMD 233 (479)
Q Consensus 161 li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~ 233 (479)
||.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+. .+++..+++ ..+..|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 78999999999999999999999998765444 344444444 2334443 455566777
Q ss_pred HHHccC
Q 011714 234 GFCKVG 239 (479)
Q Consensus 234 ~~~~~~ 239 (479)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777655
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=3.4e-18 Score=166.87 Aligned_cols=112 Identities=13% Similarity=0.216 Sum_probs=54.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 011714 122 TFSIMIRCYCNKNDFFEARKVIDCMFD---NGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLK 198 (479)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 198 (479)
+|+++|.+||+.|++++|.++|++|.+ .|+.||..+||+||++|++.|++++|.++|++|.+.|+.||..||+++|.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 445555555555555555555544332 24444555555555555555555555555555555555555555555555
Q ss_pred HHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011714 199 GLCYVGRV-EEAYEMLMNVKNDGLKPDVYTYTAVMD 233 (479)
Q Consensus 199 ~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~ 233 (479)
++++.|+. ++|.++|++|.+.|+.||..+|+.++.
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~ 244 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCC
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccC
Confidence 55554442 344455555555455555555544443
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=4.7e-15 Score=141.53 Aligned_cols=354 Identities=10% Similarity=-0.065 Sum_probs=238.7
Q ss_pred HhcCChhhHHHHHHHHHhc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-C-CCCHHhHHH
Q 011714 61 IKASPLKERIDIFDSIKKD--------GTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSY-----G-L-APNSWTFSI 125 (479)
Q Consensus 61 ~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-----~-~-~~~~~~~~~ 125 (479)
...|+.++|++.|+...+. ..+....+|+.+...|...|++++|+..+++..+. + . .....++..
T Consensus 62 ~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~ 141 (472)
T 4g1t_A 62 HLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHH
Confidence 3578999999999765421 12335678999999999999999999999987542 1 1 123456666
Q ss_pred HHHHHHhc--CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 011714 126 MIRCYCNK--NDFFEARKVIDCMFDNGYHPNVTTFTILVNSL---CKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGL 200 (479)
Q Consensus 126 l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (479)
+..++... +++++|...|++..+.. |-+...+..+..++ ...++.++|++.+++..+.. +.+..++..+...+
T Consensus 142 ~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~ 219 (472)
T 4g1t_A 142 EGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKL 219 (472)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHH
Confidence 66555554 57999999999998764 33566666655553 45678889999999888764 44666676666555
Q ss_pred Hh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc---
Q 011714 201 CY----VGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKE--- 273 (479)
Q Consensus 201 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 273 (479)
.. .+++++|.+++++..... +.+...+..+...|...|++++|...++++.+.... +..++..+..+|...
T Consensus 220 ~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~ 297 (472)
T 4g1t_A 220 HKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQ 297 (472)
T ss_dssp HHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHH
Confidence 54 467789999999988764 336788899999999999999999999999886433 566777776665432
Q ss_pred ----------------CChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHH--HHHH
Q 011714 274 ----------------GTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDER--MMNS 335 (479)
Q Consensus 274 ----------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ 335 (479)
+..+.|+..+++...... .+...+..+...+...|++++|...|++.++....+... .+..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~ 376 (472)
T 4g1t_A 298 VMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLR 376 (472)
T ss_dssp HHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 235677778877766542 356678889999999999999999999998865443221 1111
Q ss_pred HHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 011714 336 LLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQAL 415 (479)
Q Consensus 336 l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 415 (479)
+..... ...|+.++|+..|++.....+. ..... +....+.+++++..... +.+..+|..+..+|
T Consensus 377 ~~~~~~----~~~~~~~~Ai~~y~kal~i~~~--~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~ 440 (472)
T 4g1t_A 377 YGNFQL----YQMKCEDKAIHHFIEGVKINQK--SREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQ 440 (472)
T ss_dssp HHHHHH----HTSSCHHHHHHHHHHHHHSCCC--CHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHH
T ss_pred HHHHHH----HHCCCHHHHHHHHHHHHhcCcc--cHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 111111 2568999999999998876443 21111 12334455666666543 34678899999999
Q ss_pred HcCCCHHHHHHHHHHHHhCC
Q 011714 416 CGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~ 435 (479)
...|++++|++.|++.++.+
T Consensus 441 ~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 441 ELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHCC-------------
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999876
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=1.2e-13 Score=139.65 Aligned_cols=323 Identities=12% Similarity=0.146 Sum_probs=196.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYG--LAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTIL 161 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (479)
++.--...+++|...|.+.+|+++++++...+ +.-+...-+.++.+.++. +..+..++.+.+... + ...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHH
Confidence 45555778888888999999999999887432 113445556666666655 445555555554321 1 2335
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 011714 162 VNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 241 (479)
Q Consensus 162 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 241 (479)
...+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCH
Confidence 5666677777777777777531 1222222322 5566777777766442 456677777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 011714 242 NEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEM 321 (479)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (479)
++|++.|.+. .|...|..++.++.+.|++++|++++....+.. ++....+.++.+|.+.++++....+.
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 7777777543 256666777777777777777777777665543 22223334666777776666433332
Q ss_pred HHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 011714 322 VRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGH 401 (479)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 401 (479)
. .++...+..+-..+. ..|++++|...|... ..|..++.++.+.|++++|++.++++
T Consensus 1191 -~---~~n~ad~~~iGd~le-----~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA----- 1247 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCY-----DEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA----- 1247 (1630)
T ss_pred -h---CCCHHHHHHHHHHHH-----hcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-----
Confidence 1 223344444444443 557777777777764 24677777777777777777777655
Q ss_pred CCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 402 IPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 402 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
.+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++..+.
T Consensus 1248 -~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1248 -NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred -CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2445666666666666666666665442 223455556666666667777777777666543
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=2.1e-13 Score=137.82 Aligned_cols=340 Identities=15% Similarity=0.146 Sum_probs=255.2
Q ss_pred hcCChhhHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 011714 62 KASPLKERIDIFDSIKKDGT--NWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEA 139 (479)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 139 (479)
..+.+.+|+++++.+...+. .-+...-+.++....+. +..+..++.++.... ....+...+...|.+++|
T Consensus 997 ~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A 997 TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAISNELFEEA 1068 (1630)
T ss_pred hCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHHhCCCHHHH
Confidence 67889999999999984321 13456667777777776 556666666555422 134477888899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011714 140 RKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND 219 (479)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 219 (479)
..+|++.. ......+.++. ..|++++|.++.++.. +..+|..+..++...|++++|+..|.+.
T Consensus 1069 f~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1069 FAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 99999863 13333344433 6788999999998763 5778999999999999999999999664
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHH
Q 011714 220 GLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYS 299 (479)
Q Consensus 220 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 299 (479)
-|...|..++.++.+.|++++|.++|....+.. ++....+.++.+|++.+++++...++ + .++...|.
T Consensus 1132 ---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~ 1199 (1630)
T 1xi4_A 1132 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQ 1199 (1630)
T ss_pred ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHH
Confidence 377888899999999999999999998877754 33334446899999999888644432 2 24666777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011714 300 TLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRT 379 (479)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (479)
.+...|...|++++|..+|..+ ..+..+...+. +.|+++.|.+.+++.. +..+|..+..+
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLv-----kLge~q~AIEaarKA~------n~~aWkev~~a 1259 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLV-----HLGEYQAAVDGARKAN------STRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHH-----HhCCHHHHHHHHHHhC------CHHHHHHHHHH
Confidence 8999999999999999999885 35677777776 6689999999998772 56789999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc--CCHh
Q 011714 380 LGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQL--EKSY 457 (479)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~ 457 (479)
|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +-....|..+..+|.+. ++.-
T Consensus 1260 cve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHH
Confidence 99999999998876542 3356667788999999999999999998887665 44556676777666653 4555
Q ss_pred HHHHHHH
Q 011714 458 DACALYG 464 (479)
Q Consensus 458 ~A~~~~~ 464 (479)
++.++|.
T Consensus 1334 Ehlk~f~ 1340 (1630)
T 1xi4_A 1334 EHLELFW 1340 (1630)
T ss_pred HHHHHHH
Confidence 5555554
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=1.6e-15 Score=128.30 Aligned_cols=198 Identities=14% Similarity=0.082 Sum_probs=124.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
+++..+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+.. |.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 455667777777777777777777777777654 5566777777777777777777777777777654 34566777777
Q ss_pred HHHHhc-----------CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011714 163 NSLCKS-----------GRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAV 231 (479)
Q Consensus 163 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 231 (479)
.++... |++++|+..+++..+.. +.+..++..+..++...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 777777 77777777777666653 3345666666666677777777777777666655 456666666
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011714 232 MDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLM 286 (479)
Q Consensus 232 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 286 (479)
..++...|++++|+..|+++++.... +...+..+...+.+.|++++|+..+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666677777777777666665322 4555666666666666666666666554
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=4.2e-15 Score=129.42 Aligned_cols=225 Identities=14% Similarity=0.039 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC--CC----HhHHH
Q 011714 226 YTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCL--PD----KISYS 299 (479)
Q Consensus 226 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~ 299 (479)
..+..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|+..+++..+.... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344455555555555566665555555544 34555555555566666666666655555443111 11 35566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011714 300 TLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRT 379 (479)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (479)
.+...+...|++++|...++++.+.. |+.. .+ ...|++++|...++.+....+. +...+..++..
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~-------~~-----~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 148 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTAD-------IL-----TKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH-------HH-----HHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chhH-------HH-----HHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHH
Confidence 66666666677777776666666542 2321 11 1447777777777777765433 45667777778
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHH
Q 011714 380 LGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDA 459 (479)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 459 (479)
+...|++++|+..++++.+.. +.+..++..+..++...|++++|+..++++.+.. +.+...+..+..++...|++++|
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHH
Confidence 888888888888888877653 2356677777778888888888888888877764 44567777788888888888888
Q ss_pred HHHHHHHHhC
Q 011714 460 CALYGAALKQ 469 (479)
Q Consensus 460 ~~~~~~~~~~ 469 (479)
...++++++.
T Consensus 227 ~~~~~~a~~~ 236 (258)
T 3uq3_A 227 LETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888877764
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=4.9e-15 Score=129.00 Aligned_cols=227 Identities=9% Similarity=0.023 Sum_probs=186.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC--CC----HHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYH--PN----VTT 157 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~ 157 (479)
....|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...++...+.... ++ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678888889999999999999999988776 77888999999999999999999999988764211 12 578
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 011714 158 FTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK 237 (479)
Q Consensus 158 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 237 (479)
+..+..++...|++++|.+.+++..+. .|+. ..+...|++++|...++++.... +.+...+..+...+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 888999999999999999999998876 3453 34566788899999999988763 2256778888889999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 011714 238 VGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSI 317 (479)
Q Consensus 238 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 317 (479)
.|++++|...++++.+.... +...+..+..++...|++++|+..+++..+.. +.+...+..+..++...|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999998886433 67788889999999999999999999988764 23577888889999999999999999
Q ss_pred HHHHHHc
Q 011714 318 FKEMVRF 324 (479)
Q Consensus 318 ~~~~~~~ 324 (479)
+++..+.
T Consensus 230 ~~~a~~~ 236 (258)
T 3uq3_A 230 LDAARTK 236 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888764
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=4.9e-15 Score=139.83 Aligned_cols=378 Identities=13% Similarity=0.053 Sum_probs=247.8
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 011714 58 VDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQ---ETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKN 134 (479)
Q Consensus 58 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (479)
...++.+++++|+.+|+...+.|. +..+..|...+...|+. ++|+..|++..+. +...+..+...+...+
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 445678899999999999887763 34455666777778888 8999999998853 6667777777565555
Q ss_pred -----ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 011714 135 -----DFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLK---EALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRV 206 (479)
Q Consensus 135 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 206 (479)
+.++|...|++..+.|. ...+..|...|...+..+ ++.+.+......| +...+..+...|...+.+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 78899999999998763 337777788887765533 4555565555554 345666778888888855
Q ss_pred HHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc----CC
Q 011714 207 EEA----YEMLMNVKNDGLKPDVYTYTAVMDGFCKVG---RSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKE----GT 275 (479)
Q Consensus 207 ~~a----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~ 275 (479)
+++ ..+++..... +...+..+...|...| +.++|++.|+...+.|.. +...+..+...|... ++
T Consensus 158 ~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 158 DQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp GGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCC
T ss_pred ccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCC
Confidence 444 4444444332 3337888888999999 999999999999998744 666567777777655 78
Q ss_pred hhhHHHHHHHHHhCCCCCCHhHHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHH
Q 011714 276 PMKGVGLLKLMKKRNCLPDKISYSTLLNG-L--LKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLE 352 (479)
Q Consensus 276 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 352 (479)
+++|+.+|++.. .| +...+..+... + ...+++++|..+|++..+.| +......+-..+. .+.....+++
T Consensus 233 ~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 999999999988 43 55666666665 3 46899999999999999876 3444444444443 1111223999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHc----CCCHHHH
Q 011714 353 DAYQVFEKMTKKVSVTDPGTYGIVIRTLGK----GKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCG----EGKIDKA 424 (479)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a 424 (479)
+|...|++.. . .++..+..+...|.. ..++++|..+|++..+.|. ......|...|.. ..+.++|
T Consensus 305 ~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 305 AAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHH
Confidence 9999999877 2 266778888888876 4499999999999988653 4456666666664 5689999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 425 LLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
..+++...+.|. ++.......+......++..+|..+.++.++.
T Consensus 378 ~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 378 YVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 999999999873 23332222233333445677788887776553
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=3.9e-15 Score=125.88 Aligned_cols=200 Identities=13% Similarity=0.022 Sum_probs=144.4
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 011714 117 APNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCL 196 (479)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (479)
+++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 5667788888888888888999988888888764 4577888888888888888888888888888764 4567788888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 011714 197 LKGLCYV-----------GRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNT 265 (479)
Q Consensus 197 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 265 (479)
..++... |++++|+..+++..+.... +...+..+..++...|++++|+..|+++++.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 8888888 8888888888888775432 56777778888888888888888888887766 47777788
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011714 266 LFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMV 322 (479)
Q Consensus 266 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (479)
+..+|...|++++|+..+++..+... .+...+..+...+...|++++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888888888888888888777542 256677777777888888888887777654
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.68 E-value=2.7e-13 Score=119.15 Aligned_cols=224 Identities=12% Similarity=0.009 Sum_probs=191.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCN----KNDFFEARKVIDCMFDNGYHPNVTTFT 159 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 159 (479)
++.++..+...+...|++++|+..|++..+. .+..++..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5677888888999999999999999998873 356778888888998 999999999999998875 778888
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011714 160 ILVNSLCK----SGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCY----VGRVEEAYEMLMNVKNDGLKPDVYTYTAV 231 (479)
Q Consensus 160 ~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 231 (479)
.+...|.. .+++++|++.|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 89999998 999999999999988875 77888888899988 999999999999998865 56677778
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011714 232 MDGFCK----VGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCK----EGTPMKGVGLLKLMKKRNCLPDKISYSTLLN 303 (479)
Q Consensus 232 i~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 303 (479)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888887 899999999999988864 56778888888888 899999999999988875 3667778888
Q ss_pred HHHh----cCChHHHHHHHHHHHHcC
Q 011714 304 GLLK----WGKIRPAVSIFKEMVRFG 325 (479)
Q Consensus 304 ~~~~----~~~~~~a~~~~~~~~~~~ 325 (479)
.+.. .+++++|...+++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8888 899999999999988765
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.67 E-value=5.1e-14 Score=123.69 Aligned_cols=236 Identities=10% Similarity=0.010 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC--CHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHP--NVTTFTILV 162 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li 162 (479)
...+......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++...+.+..+ ....|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455667788888999999999999988764 4456688888889999999999999999888743111 133478888
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 011714 163 NSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 242 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 242 (479)
.++...|++++|++.|++..+.. +.+..++..+...+...|++++|+..+++..+.. +.+...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999888764 4466788889999999999999999998887763 335667777773444455999
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC---hhhHHHHHHHHHhCC-CCCC------HhHHHHHHHHHHhcCChH
Q 011714 243 EAMELLNEAIERGVTPNVVTFNTLFNGYCKEGT---PMKGVGLLKLMKKRN-CLPD------KISYSTLLNGLLKWGKIR 312 (479)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~~~ 312 (479)
+|...|+++.+.... +...+..+..++...|+ +++|...+++..+.. -.|+ ...|..+...+...|+++
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999998886432 46677778888888887 788888888876542 1122 246777888888899999
Q ss_pred HHHHHHHHHHHc
Q 011714 313 PAVSIFKEMVRF 324 (479)
Q Consensus 313 ~a~~~~~~~~~~ 324 (479)
+|.+.++++.+.
T Consensus 239 ~A~~~~~~al~~ 250 (272)
T 3u4t_A 239 KADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999988875
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.67 E-value=1.5e-14 Score=136.45 Aligned_cols=351 Identities=13% Similarity=0.009 Sum_probs=235.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh---hhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011714 90 DLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDF---FEARKVIDCMFDNGYHPNVTTFTILVNSLC 166 (479)
Q Consensus 90 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (479)
.+...+.+.|++++|+++|++..+.| +...+..+...|...|+. ++|...|++..+. +...+..|...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36777888999999999999998766 344556666777778888 8999999998853 6666777777565
Q ss_pred hcC-----ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 011714 167 KSG-----RLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVE---EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 238 (479)
Q Consensus 167 ~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 238 (479)
..+ +.++|++.|++..+.|. ++ .+..|...|...+..+ ++.+.+......| +......+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 555 78899999999998773 33 6777777787766543 3555555555544 345566777778777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC---ChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc----CCh
Q 011714 239 GRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEG---TPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKW----GKI 311 (479)
Q Consensus 239 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~ 311 (479)
+.++++......+.+.-...+...+..|...|...| +.++|+..|++..+.|.. +...+..+...|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCH
Confidence 755544444333322111223447888999999999 999999999999998743 555556666666554 799
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC-----CH
Q 011714 312 RPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGK-----KT 386 (479)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~ 386 (479)
++|..+|++.. .| +......+-..+... ...+++++|...|++..+.+ +...+..+...|. .| ++
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~--~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDF--PELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHS--GGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 99999999987 33 233333343332211 14689999999999998775 5677888888887 45 99
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc----cCCHhH
Q 011714 387 DEALIHLHHAIEMGHIPRTITFNNVIQALCG----EGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQ----LEKSYD 458 (479)
Q Consensus 387 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 458 (479)
++|+++|++.. .-+...+..+...|.. ..++++|..+|++..+.| +......|...|.. ..+..+
T Consensus 304 ~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHH
Confidence 99999999877 3356677777777766 449999999999999877 45566777777764 458999
Q ss_pred HHHHHHHHHhCCC
Q 011714 459 ACALYGAALKQGV 471 (479)
Q Consensus 459 A~~~~~~~~~~~~ 471 (479)
|..+|+.+.+.|.
T Consensus 377 A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 377 AYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCC
Confidence 9999999988874
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.65 E-value=1.6e-14 Score=124.45 Aligned_cols=203 Identities=14% Similarity=0.063 Sum_probs=135.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
.+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 456667777778888888888888888887654 4567777888888888888888888888887653 34677777788
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 011714 163 NSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 242 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 242 (479)
..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 88888888888888888877654 4466777777788888888888888888777653 235667777777777888888
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 011714 243 EAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN 290 (479)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (479)
+|...++++.+... .+..++..+..+|...|++++|...++++.+..
T Consensus 177 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 88888877776532 256667777777777777777777777776643
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=1e-13 Score=120.19 Aligned_cols=201 Identities=10% Similarity=-0.036 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS 164 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (479)
...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556667777777777777777777776553 4456667777777777777777777777776553 3356666777777
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 011714 165 LCKSGRLKEALEVLDQMGRIGCKP-NIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 243 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 243 (479)
+...|++++|.+.++++.+.+..| +...+..+...+...|++++|...+++..+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777766522223 445566666666777777777777766665432 245566666666666677777
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 244 AMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR 289 (479)
Q Consensus 244 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (479)
|...++.+.+... .+...+..+...+...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7766666665432 24555666666666666666666666666554
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=6.6e-13 Score=116.63 Aligned_cols=228 Identities=11% Similarity=-0.055 Sum_probs=155.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 011714 189 NIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK----VGRSNEAMELLNEAIERGVTPNVVTFN 264 (479)
Q Consensus 189 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 264 (479)
+..++..+...+...|++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56677778888888888888888888887732 45667777777877 888888888888887764 566777
Q ss_pred HHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHH
Q 011714 265 TLFNGYCK----EGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLK----WGKIRPAVSIFKEMVRFGFEVDERMMNSL 336 (479)
Q Consensus 265 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 336 (479)
.+...|.. .+++++|+..+++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77778877 888888888888887765 56677777777777 778888888887777654 33333444
Q ss_pred HHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 011714 337 LRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGK----GKKTDEALIHLHHAIEMGHIPRTITFNNVI 412 (479)
Q Consensus 337 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 412 (479)
-..+... ....+++++|...|++..+.+ +...+..+...|.. .+++++|++.+++..+.+ +...+..+.
T Consensus 153 g~~~~~~-~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 153 GSLYDAG-RGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHT-SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHcC-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 3333310 001566777777777666543 34556666666666 667777777776666643 244555666
Q ss_pred HHHHc----CCCHHHHHHHHHHHHhCC
Q 011714 413 QALCG----EGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 413 ~~~~~----~g~~~~a~~~~~~~~~~~ 435 (479)
..|.. .+++++|+..+++..+.+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 66666 666777777776666654
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=2e-13 Score=115.99 Aligned_cols=202 Identities=10% Similarity=-0.061 Sum_probs=123.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
++..+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45566666777777777777777777766543 3446666666677777777777777777666543 335566666666
Q ss_pred HHHhc-CChHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 011714 164 SLCKS-GRLKEALEVLDQMGRIGCKP-NIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 241 (479)
Q Consensus 164 ~~~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 241 (479)
.+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+... .+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCH
Confidence 66666 77777777776666522122 245566666666666666666666666655422 2455566666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011714 242 NEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKK 288 (479)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 288 (479)
++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 66666666665543212444555555555666666666666665544
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=2.2e-13 Score=118.10 Aligned_cols=202 Identities=13% Similarity=0.026 Sum_probs=173.7
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKG 199 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (479)
...+..+...+...|++++|.+.++++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5677888889999999999999999998764 4578889999999999999999999999998765 4578889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhh
Q 011714 200 LCYVGRVEEAYEMLMNVKNDGLKP-DVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMK 278 (479)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 278 (479)
+...|++++|.++++++...+..| +...+..+..++...|++++|...++++.+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998733334 567788889999999999999999999988643 367788999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011714 279 GVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFG 325 (479)
Q Consensus 279 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 325 (479)
|...++++.+.. +.+...+..+...+...|+.++|.++++++.+..
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999998764 3467778888889999999999999999988753
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=1.1e-14 Score=128.17 Aligned_cols=245 Identities=14% Similarity=0.019 Sum_probs=150.2
Q ss_pred CChhhHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 011714 64 SPLKERIDIFDSIKKDGT---NWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEAR 140 (479)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (479)
++.++|+..++.+.+... +.+...|..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 456777777777766432 1245667777777888888888888888777654 445677777777777888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011714 141 KVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDG 220 (479)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 220 (479)
..++++.+.. +.+..++..+..++...|++++|.+.++++.+.. |+.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 8887777653 3356777777777777777777777777777653 333333334444456677777777776665542
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC---CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhH
Q 011714 221 LKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVT---PNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKIS 297 (479)
Q Consensus 221 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 297 (479)
+++...+ .++..+...++.++|...+..+.+.... .+...+..+...|...|++++|...+++..... |+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~-- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN-- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--
Confidence 2233333 3555566666667777777666543211 013556666666667777777777777666543 211
Q ss_pred HHHHHHHHHhcCChHHHHHHH
Q 011714 298 YSTLLNGLLKWGKIRPAVSIF 318 (479)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~ 318 (479)
+.....++...|++++|.+.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 112233444555555555443
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=1.3e-13 Score=126.21 Aligned_cols=234 Identities=10% Similarity=0.016 Sum_probs=193.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-hhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKND-FFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
+...|+.+...+...|++++|+..|+++++.. +.+..+|..+..++...|+ +++|+..|+++++.. +-+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 35678888889999999999999999998765 5568889999999999996 999999999999875 44788999999
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCH
Q 011714 163 NSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK-VGRS 241 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~ 241 (479)
.++...|++++|+..|+++.+.. +-+..+|..+..++...|++++|+..++++++.... +...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999875 557889999999999999999999999999887543 78889999988888 5665
Q ss_pred HHH-----HHHHHHHHHCCCCCCHhhHHHHHHHHHhcC--ChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC-----
Q 011714 242 NEA-----MELLNEAIERGVTPNVVTFNTLFNGYCKEG--TPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWG----- 309 (479)
Q Consensus 242 ~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----- 309 (479)
++| +..++++++.... +...|..+...+...| ++++|++.+.++ +. .+.+...+..+...+.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 777 5888888876433 6778888888888888 688999998887 33 3346778888888888764
Q ss_pred ----ChHHHHHHHHHH-HHc
Q 011714 310 ----KIRPAVSIFKEM-VRF 324 (479)
Q Consensus 310 ----~~~~a~~~~~~~-~~~ 324 (479)
..++|.++++++ .+.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEK 348 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 258899999888 553
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=3.1e-13 Score=114.81 Aligned_cols=204 Identities=14% Similarity=-0.014 Sum_probs=162.2
Q ss_pred CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 011714 118 PNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLL 197 (479)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 197 (479)
.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+..++...|++++|.+.+++..+.. +.+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 346678888888899999999999999888764 4467788888888999999999999999888764 45677888888
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 011714 198 KGLCYV-GRVEEAYEMLMNVKNDGLKP-DVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGT 275 (479)
Q Consensus 198 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 275 (479)
..+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+... .+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCC
Confidence 888999 99999999998888732233 356778888888889999999999988887643 257778888888888999
Q ss_pred hhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011714 276 PMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRF 324 (479)
Q Consensus 276 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 324 (479)
+++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999988888877543135666777777788888888888888887754
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=7.3e-14 Score=122.68 Aligned_cols=247 Identities=13% Similarity=-0.006 Sum_probs=112.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 011714 158 FTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKP--DVYTYTAVMDGF 235 (479)
Q Consensus 158 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~ 235 (479)
+......+...|++++|+..|++..+.. +.+..++..+...+...|++++|+..+++..+....+ ....|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3334444455555555555555554432 2223344444455555555555555555544421111 122244444445
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHH
Q 011714 236 CKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAV 315 (479)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 315 (479)
...|++++|...|+++.+.... +...+..+...|...|++++|+..+++..+.. +.+...+..+...+...
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~------- 155 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN------- 155 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT-------
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH-------
Confidence 5555555555555544443211 33344444444444444444444444443331 11223333333122222
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCC---HHHHHHH
Q 011714 316 SIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKK---TDEALIH 392 (479)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~ 392 (479)
+++++|...|+.+.+..+. +...+..+..++...|+ +++|...
T Consensus 156 ---------------------------------~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~ 201 (272)
T 3u4t_A 156 ---------------------------------KEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPY 201 (272)
T ss_dssp ---------------------------------TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHH
Confidence 3445555555544443322 23444444455554454 5556665
Q ss_pred HHHHHHcC-CCCc------hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011714 393 LHHAIEMG-HIPR------TITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITK 449 (479)
Q Consensus 393 ~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (479)
++++.+.. ..|+ ..+|..+...|...|++++|+..++++.+.. +.+...+..+...
T Consensus 202 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 202 YEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD-PTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC--
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhhh
Confidence 55555431 1122 1355566666666777777777777776654 3344444444433
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=3e-13 Score=123.68 Aligned_cols=253 Identities=12% Similarity=0.089 Sum_probs=185.5
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGR-LKEALEVLDQMGRIGCKPNIQTYNCLLK 198 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 198 (479)
...|..+...+...|++++|++.++++++.. +-+..+|+.+..++...|+ +++|+..|++..+.. +-+..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 5577788888888999999999999998764 4468888889999999996 999999999988875 457788899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCChh
Q 011714 199 GLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCK-EGTPM 277 (479)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 277 (479)
++...|++++|+..|+++.+.... +...|..+..++...|++++|+..++++++.... +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 999999999999999998886533 7888888888899999999999999999887544 77788888888888 56657
Q ss_pred hH-----HHHHHHHHhCCCCCCHhHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccc---hh
Q 011714 278 KG-----VGLLKLMKKRNCLPDKISYSTLLNGLLKWG--KIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSW---EE 347 (479)
Q Consensus 278 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~ 347 (479)
+| +..+++...... -+...|..+...+...| ++++|.+.+.++ +. ...+...+..+...+...+. ..
T Consensus 253 eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 477777776542 25667777777777777 578888888776 32 22344555555555542100 00
Q ss_pred hc-cHHHHHHHHHHH-HhCCCCCChhhHHHHHHHH
Q 011714 348 KD-LLEDAYQVFEKM-TKKVSVTDPGTYGIVIRTL 380 (479)
Q Consensus 348 ~~-~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 380 (479)
.+ .+++|..+|+++ .+.++. ....|..+...+
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l 363 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTI-RKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 02 357788888877 554332 334555555444
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=9.4e-14 Score=122.12 Aligned_cols=248 Identities=16% Similarity=0.034 Sum_probs=191.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCC---CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 011714 96 VMLNEQETAVKFFSEASSYGL---APNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLK 172 (479)
Q Consensus 96 ~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 172 (479)
...|++++|+..|+++.+... +.+..++..+...+...|++++|...|+++.+.. +.+..+|..+..++...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 345889999999999987632 1246788899999999999999999999999874 457899999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011714 173 EALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAI 252 (479)
Q Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 252 (479)
+|.+.|++..+.. +.+..++..+...+...|++++|...++++.+.. |+.......+..+...|++++|...+++..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999874 4467899999999999999999999999998853 443344445556677799999999998887
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC
Q 011714 253 ERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLP---DKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVD 329 (479)
Q Consensus 253 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 329 (479)
... +++...+ .++..+...++.++|+..+++........ +...+..+...+...|++++|...++++.+.. |+
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~ 247 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VH 247 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CT
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--ch
Confidence 753 2344444 47778888888999999999887653211 25778889999999999999999999998764 42
Q ss_pred HHHHHHHHHHHhcccchhhccHHHHHHHH
Q 011714 330 ERMMNSLLRGLCMKSWEEKDLLEDAYQVF 358 (479)
Q Consensus 330 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~ 358 (479)
..... ...+. ..|++++|...+
T Consensus 248 ~~~~~--~~~~~-----~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NFVEH--RYALL-----ELSLLGQDQDDL 269 (275)
T ss_dssp TCHHH--HHHHH-----HHHHHHHC----
T ss_pred hHHHH--HHHHH-----HHHHHHhhHHHH
Confidence 21111 11222 457778777665
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.60 E-value=1.9e-13 Score=117.77 Aligned_cols=203 Identities=11% Similarity=0.067 Sum_probs=160.6
Q ss_pred CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 011714 118 PNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLL 197 (479)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 197 (479)
.....|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 456677888889999999999999999998764 4578899999999999999999999999998775 45788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 011714 198 KGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPM 277 (479)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 277 (479)
..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998864 33678899999999999999999999999988643 36778999999999999999
Q ss_pred hHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011714 278 KGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFG 325 (479)
Q Consensus 278 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 325 (479)
+|+..++++.+.. +.+..++..+..++...|++++|...++++.+..
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999998764 2367789999999999999999999999998763
No 57
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.56 E-value=1.8e-10 Score=112.54 Aligned_cols=219 Identities=11% Similarity=-0.014 Sum_probs=156.6
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHH-HHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011714 244 AMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGV-GLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMV 322 (479)
Q Consensus 244 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (479)
+..+|++++.. .+-....|...+..+...|+.++|. .+|++.... ++.+...+...+......|+++.|.++|+.++
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44556666554 2235666777777777889989997 999998864 34466667778888889999999999999987
Q ss_pred HcCC---------CcC------------HHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 011714 323 RFGF---------EVD------------ERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLG 381 (479)
Q Consensus 323 ~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (479)
.... .|+ ..++...+... .+.|..+.|..+|....+..+......|...+..-.
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e-----rR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~ 480 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM-----KRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY 480 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH-----HHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 6310 131 11233333333 256889999999999987512223344544444444
Q ss_pred cC-CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHhccCCHhH
Q 011714 382 KG-KKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIP--SRTSYDMLITKLDQLEKSYD 458 (479)
Q Consensus 382 ~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~ 458 (479)
+. ++.+.|.++|+..++. .+-+...|...+......|+.+.|..+|++.+.....+ ....|...+..-.+.|+.+.
T Consensus 481 ~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 481 HISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp TTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred HhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 44 4589999999999876 33356667788888888899999999999999875321 34678888888888999999
Q ss_pred HHHHHHHHHhCC
Q 011714 459 ACALYGAALKQG 470 (479)
Q Consensus 459 A~~~~~~~~~~~ 470 (479)
+..+.+++.+.-
T Consensus 560 ~~~v~~R~~~~~ 571 (679)
T 4e6h_A 560 VRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhC
Confidence 999999998854
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=1e-13 Score=129.75 Aligned_cols=279 Identities=13% Similarity=0.066 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCH
Q 011714 155 VTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNI----QTYNCLLKGLCYVGRVEEAYEMLMNVKND----GL-KPDV 225 (479)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~ 225 (479)
...+..+...+...|++++|+..|++..+.+ +.+. .++..+...|...|++++|...+++..+. +. ....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3445556667778888888888888877763 2232 46777777788888888888888776542 11 1134
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHC----C-CCCCHhhHHHHHHHHHhcCC-----------------hhhHHHHH
Q 011714 226 YTYTAVMDGFCKVGRSNEAMELLNEAIER----G-VTPNVVTFNTLFNGYCKEGT-----------------PMKGVGLL 283 (479)
Q Consensus 226 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~ 283 (479)
.++..+...|...|++++|...++++.+. + ......++..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 55667777777778888887777776553 1 11123355666666666676 66666666
Q ss_pred HHHHhC----CC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHH
Q 011714 284 KLMKKR----NC-LPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVF 358 (479)
Q Consensus 284 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~ 358 (479)
++..+. +. .....++..+...+...|++++|...+++..+..... ++
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------------------~~-------- 258 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--------------------GD-------- 258 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------TC--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--------------------CC--------
Confidence 554331 10 0112344445555555555555555555544321000 00
Q ss_pred HHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC-----CchHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011714 359 EKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHI-----PRTITFNNVIQALCGEGKIDKALLLLFLMYE 433 (479)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (479)
.......+..+..++...|++++|...++++.+.... ....++..+..++...|++++|..++++..+
T Consensus 259 -------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 259 -------RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp -------HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0000125666777777777777777777776643110 1134566677777777888888777777665
Q ss_pred CCC-----CCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 434 HAK-----IPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 434 ~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
... .....++..+..+|...|++++|.+.++++++.
T Consensus 332 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 332 IAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 311 111345667777777788888888887777653
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=7e-14 Score=130.43 Aligned_cols=301 Identities=14% Similarity=0.058 Sum_probs=159.7
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-C
Q 011714 119 NSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPN----VTTFTILVNSLCKSGRLKEALEVLDQMGRI----GCKP-N 189 (479)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~ 189 (479)
....+......+...|++++|...|++..+.+ +.+ ..++..+...+...|++++|...+++.... +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34445555566666666666666666666542 112 234555666666666666666666654322 1111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCC--------------------HHHH
Q 011714 190 IQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLK-PD----VYTYTAVMDGFCKVGR--------------------SNEA 244 (479)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~--------------------~~~a 244 (479)
..++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 334555555555666666666655554432000 01 2244444445555555 4444
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 245 MELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLP-DKISYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
...+++..+. ....+..+ ...++..+...+...|++++|...+++..+
T Consensus 167 ~~~~~~al~~-------------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 167 VDFYEENLSL-------------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHHHH-------------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4444443221 00011001 123444455555555555555555555442
Q ss_pred cCC-CcC----HHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCC-C----ChhhHHHHHHHHhcCCCHHHHHHHH
Q 011714 324 FGF-EVD----ERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSV-T----DPGTYGIVIRTLGKGKKTDEALIHL 393 (479)
Q Consensus 324 ~~~-~~~----~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~ 393 (479)
... .++ ...+..+...+. ..|++++|...+++....... . ...++..+...+...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 290 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYI-----FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 290 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHH-----HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 210 011 112222333332 446666666666655432110 0 1346778888899999999999999
Q ss_pred HHHHHcCCC-Cc----hHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CC-CCCHhhHHHHHHHHhccCCH
Q 011714 394 HHAIEMGHI-PR----TITFNNVIQALCGEGKIDKALLLLFLMYEH----AK-IPSRTSYDMLITKLDQLEKS 456 (479)
Q Consensus 394 ~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 456 (479)
+++.+.... ++ ..++..+..++...|++++|...+++..+. +. .....++..+...+...|+.
T Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 291 LKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 887654111 11 456778888889999999999999887653 11 11245667777777777765
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=2.6e-13 Score=126.50 Aligned_cols=279 Identities=14% Similarity=0.089 Sum_probs=166.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-C
Q 011714 154 NVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN----IQTYNCLLKGLCYVGRVEEAYEMLMNVKND----GLKP-D 224 (479)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 224 (479)
....+......+...|++++|...|++..+.+ +.+ ..++..+...+...|++++|...+++.... +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34444555555566666666666666655542 112 234555555555556666665555554321 1111 1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCCHhHHHHHHH
Q 011714 225 VYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNC-LPDKISYSTLLN 303 (479)
Q Consensus 225 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~ 303 (479)
..++..+...+...|++++|...++++.+... ..+. .....++..+..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISR-------------------------------ELNDKVGEARALYNLGN 135 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------------------------------hcccccchHHHHHHHHH
Confidence 23344444455555555555555544433200 0000 001224445555
Q ss_pred HHHhcCC--------------------hHHHHHHHHHHHHc----CCCcC-HHHHHHHHHHHhcccchhhccHHHHHHHH
Q 011714 304 GLLKWGK--------------------IRPAVSIFKEMVRF----GFEVD-ERMMNSLLRGLCMKSWEEKDLLEDAYQVF 358 (479)
Q Consensus 304 ~~~~~~~--------------------~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~ 358 (479)
.+...|+ +++|...+.+..+. +..+. ...+..+...+. ..|++++|...+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~ 210 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHY-----LLGNFRDAVIAH 210 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HHTBHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH-----HccCHHHHHHHH
Confidence 5555555 66666666654421 11111 123334444443 679999999999
Q ss_pred HHHHhCCCC-CC----hhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC-Cc----hHHHHHHHHHHHcCCCHHHHHHHH
Q 011714 359 EKMTKKVSV-TD----PGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHI-PR----TITFNNVIQALCGEGKIDKALLLL 428 (479)
Q Consensus 359 ~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~ 428 (479)
++....... ++ ..++..+..++...|++++|...++++.+.... ++ ..++..+...+...|++++|...+
T Consensus 211 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 290 (406)
T 3sf4_A 211 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 290 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 987643111 11 237888999999999999999999988754111 11 457788889999999999999999
Q ss_pred HHHHhCCC-CCC----HhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 429 FLMYEHAK-IPS----RTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 429 ~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
++..+... ..+ ..++..+..+|...|++++|.+.++++++.
T Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 291 LKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99876421 111 557888999999999999999999998764
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.54 E-value=1.3e-11 Score=110.36 Aligned_cols=218 Identities=7% Similarity=-0.008 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHH-------hcCCh-------hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011714 102 ETAVKFFSEASSYGLAPNSWTFSIMIRCYC-------NKNDF-------FEARKVIDCMFDNGYHPNVTTFTILVNSLCK 167 (479)
Q Consensus 102 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 167 (479)
++|+.+|+++.+.. +.+...|..++..+. +.|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45556666655532 445555655555544 23554 6667777766652113345566666666666
Q ss_pred cCChHHHHHHHHHHhhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCCHHHH
Q 011714 168 SGRLKEALEVLDQMGRIGCKPN-IQ-TYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFC-KVGRSNEA 244 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a 244 (479)
.|++++|.++|++..+. .|+ .. +|..++..+.+.|++++|..+|++..+... .+...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777776654 232 22 566666666667777777777777665432 23334433332221 25777777
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCC--CHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 011714 245 MELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN-CLP--DKISYSTLLNGLLKWGKIRPAVSIFKEM 321 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (479)
..+|+..++... .+...|..++..+.+.|++++|..+|++..... .+| ....|..++......|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777766422 255666777777777777777777777776652 233 3456666666666777777777777776
Q ss_pred HHc
Q 011714 322 VRF 324 (479)
Q Consensus 322 ~~~ 324 (479)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=2.4e-13 Score=127.18 Aligned_cols=280 Identities=14% Similarity=0.082 Sum_probs=204.4
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhC----C-CCCCH
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNV----TTFTILVNSLCKSGRLKEALEVLDQMGRI----G-CKPNI 190 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~ 190 (479)
...+..+...+...|++++|...|+++.+.+ +.+. .++..+...|...|++++|.+.+++..+. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 4455667788999999999999999999864 2233 57888999999999999999999988653 1 12345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHccCC-----------------HHHHHHHH
Q 011714 191 QTYNCLLKGLCYVGRVEEAYEMLMNVKND----G-LKPDVYTYTAVMDGFCKVGR-----------------SNEAMELL 248 (479)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~~~-----------------~~~a~~~~ 248 (479)
.++..+...|...|++++|...+++.... + ......++..+...|...|+ +++|...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 67888999999999999999999987654 1 11235578888899999999 99999999
Q ss_pred HHHHHC----CC-CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CC----HhHHHHHHHHHHhcCChHHHHHHH
Q 011714 249 NEAIER----GV-TPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCL-PD----KISYSTLLNGLLKWGKIRPAVSIF 318 (479)
Q Consensus 249 ~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~ 318 (479)
++..+. +. ......+..+...|...|++++|+..+++..+.... ++ ...+..+...+...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 887653 11 112347888899999999999999999988664211 11 126667777777777777777777
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011714 319 KEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIE 398 (479)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 398 (479)
++..+... ..++. .....++..+..++...|++++|...++++.+
T Consensus 287 ~~al~~~~--------------------~~~~~---------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 287 KRTLALAV--------------------ELGER---------------EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHH--------------------HTTCH---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------------------HcCCH---------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 76654210 00100 00134567778888888999999988888765
Q ss_pred cCC----C-CchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 399 MGH----I-PRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 399 ~~~----~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
... . ....++..+..+|...|++++|..++++..+..
T Consensus 332 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 332 IAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 311 1 113467778888889999999999998888753
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.54 E-value=5e-12 Score=113.04 Aligned_cols=219 Identities=9% Similarity=0.006 Sum_probs=179.8
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 011714 67 KERIDIFDSIKKDGTNWSVSDFNDLLMALVM-------LNEQ-------ETAVKFFSEASSYGLAPNSWTFSIMIRCYCN 132 (479)
Q Consensus 67 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (479)
++|+.+|+......+. ++..|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 6788899998876544 88889888888763 5885 9999999999973114567789999999999
Q ss_pred cCChhhHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 011714 133 KNDFFEARKVIDCMFDNGYHPN-VT-TFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLC-YVGRVEEA 209 (479)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 209 (479)
.|++++|.++|++..+. .|+ .. +|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999985 343 44 89999999999999999999999999875 345555654443322 37999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCC--CHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011714 210 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERG-VTP--NVVTFNTLFNGYCKEGTPMKGVGLLKLM 286 (479)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 286 (479)
..+|+...+... -+...|..++..+.+.|++++|..+|++.++.. .+| ....|..++..+.+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999987632 368889999999999999999999999999863 344 4668899999999999999999999998
Q ss_pred HhCC
Q 011714 287 KKRN 290 (479)
Q Consensus 287 ~~~~ 290 (479)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8753
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=2.9e-12 Score=105.09 Aligned_cols=167 Identities=13% Similarity=0.087 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
++.+|..+...+...|++++|+..|++..+.. +-+..++..+..++.+.|++++|...++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56677778888888888888888888877654 4567777777788888888888888877777653 345666777777
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 011714 164 SLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 243 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 243 (479)
.+...++++.+.+.+.+..... +.+..++..+...+.+.|++++|++.|++..+... .+..++..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 7777788888888777776654 44566777777777777777777777777776542 256677777777777777777
Q ss_pred HHHHHHHHHHC
Q 011714 244 AMELLNEAIER 254 (479)
Q Consensus 244 a~~~~~~~~~~ 254 (479)
|++.|+++++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777777764
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=2.8e-13 Score=122.68 Aligned_cols=279 Identities=14% Similarity=0.105 Sum_probs=161.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHH
Q 011714 157 TFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN----IQTYNCLLKGLCYVGRVEEAYEMLMNVKND----GLKP-DVYT 227 (479)
Q Consensus 157 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 227 (479)
.+......+...|++++|...|++..+.. +.+ ...+..+...+...|++++|...+++.... +..+ ...+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34445556666777777777777766553 222 245566666666677777777766665432 1111 1344
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHhcCC-------------hhhHHHHHHHHHhC
Q 011714 228 YTAVMDGFCKVGRSNEAMELLNEAIERGV-TPN----VVTFNTLFNGYCKEGT-------------PMKGVGLLKLMKKR 289 (479)
Q Consensus 228 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~-------------~~~a~~~~~~~~~~ 289 (479)
+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ .+++...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~------- 158 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA------- 158 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH-------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH-------
Confidence 55555666666666666666665543200 001 1244444455555555 0000000
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCcC-HHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhC
Q 011714 290 NCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRF----GFEVD-ERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKK 364 (479)
Q Consensus 290 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 364 (479)
+++|...+++.... +..+. ...+..+...+. ..|++++|...+++....
T Consensus 159 ---------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 159 ---------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHY-----LLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHH
Confidence 44444444333211 10111 112222222232 446666666666655432
Q ss_pred CC-----CCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC-Cc----hHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 011714 365 VS-----VTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHI-PR----TITFNNVIQALCGEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 365 ~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (479)
.. ......+..+...+...|++++|.+.+++..+.... ++ ..++..+...+...|++++|...++++.+.
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 11 001236788889999999999999999988753111 11 456788888999999999999999988764
Q ss_pred CC-----CCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 435 AK-----IPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 435 ~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
.. .....++..+...|.+.|++++|...++++++.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 21 112447788999999999999999999999885
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.52 E-value=5.1e-13 Score=126.83 Aligned_cols=217 Identities=10% Similarity=-0.034 Sum_probs=178.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh-hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011714 99 NEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDF-FEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEV 177 (479)
Q Consensus 99 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 177 (479)
+.+++++..+++..... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34677888888776553 45788888889999999999 99999999988764 44688899999999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc--------CC
Q 011714 178 LDQMGRIGCKPNIQTYNCLLKGLCYV---------GRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV--------GR 240 (479)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~ 240 (479)
|++..+. .|+..++..+...+... |++++|+..+++..+... -+...|..+..+|... |+
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccch
Confidence 9998877 46678888889999888 999999999999887643 3678888888888888 88
Q ss_pred HHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 011714 241 SNEAMELLNEAIERGVT--PNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIF 318 (479)
Q Consensus 241 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 318 (479)
+++|+..|+++++.... .+...|..+..+|...|++++|+..|++..+... .+...+..+..++...|++++|.+.+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999886321 3778889999999999999999999999887642 25667888888888889988888766
Q ss_pred HHH
Q 011714 319 KEM 321 (479)
Q Consensus 319 ~~~ 321 (479)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 554
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.51 E-value=2.9e-12 Score=118.52 Aligned_cols=231 Identities=11% Similarity=-0.003 Sum_probs=141.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCChhhHHHHHHHHHhC----CC--CCCHhHHH
Q 011714 231 VMDGFCKVGRSNEAMELLNEAIER----GVTP-NVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR----NC--LPDKISYS 299 (479)
Q Consensus 231 li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~--~~~~~~~~ 299 (479)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|+..+++..+. +. .....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344455566666666666665542 1111 2245555666666666666666666655432 10 01124566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCC-cCH----HHHHHHHHHHhcccchhhccHHHHHHHHHHHHh-----CCCCCC
Q 011714 300 TLLNGLLKWGKIRPAVSIFKEMVRFGFE-VDE----RMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTK-----KVSVTD 369 (479)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~ 369 (479)
.+...|...|++++|...+.+.++.... ++. .++..+-..+. ..|++++|...+++... ......
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN-----SQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 6666677777777777777666532110 111 12333333333 55777777777777665 221223
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CCCchHHHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCC-CCHh
Q 011714 370 PGTYGIVIRTLGKGKKTDEALIHLHHAIEMG----HIPRTITFNNVIQALCGEGK---IDKALLLLFLMYEHAKI-PSRT 441 (479)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~ 441 (479)
..++..+..++...|++++|.+.++++.+.. -+.....+..+...+...|+ +++|+.++++. +.. ....
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~ 340 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLED 340 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHH
Confidence 4678888999999999999999999877541 11112235667778888898 77777777665 222 2345
Q ss_pred hHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 442 SYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
.+..+...|...|++++|.+.++++++.
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6778889999999999999999998774
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.51 E-value=6e-12 Score=116.42 Aligned_cols=163 Identities=8% Similarity=-0.058 Sum_probs=112.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 011714 161 LVNSLCKSGRLKEALEVLDQMGRI----GCKP-NIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDG--L----KPDVYTYT 229 (479)
Q Consensus 161 li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 229 (479)
....+...|++++|.+.+++..+. +-++ ...++..+...|...|++++|...+++..+.. . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455566778888888888777653 1111 23567777778888888888888877765421 1 11235677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHC----CCC-CCHhhHHHHHHHHHhcCChhhHHHHHHHHHh-----CCCCCCHhHHH
Q 011714 230 AVMDGFCKVGRSNEAMELLNEAIER----GVT-PNVVTFNTLFNGYCKEGTPMKGVGLLKLMKK-----RNCLPDKISYS 299 (479)
Q Consensus 230 ~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 299 (479)
.+..+|...|++++|...+++..+. +.. ....++..+..+|...|++++|+..+++..+ ...+....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7788888888888888888877653 111 1123677788888888888888888888766 22133456778
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 011714 300 TLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
.+...+...|++++|...+++..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888888887664
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=6.4e-13 Score=120.30 Aligned_cols=275 Identities=15% Similarity=0.070 Sum_probs=183.7
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCC-CCH
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPN----VTTFTILVNSLCKSGRLKEALEVLDQMGRI----GCK-PNI 190 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~ 190 (479)
...+......+...|++++|...++++.+.. +.+ ...+..+...+...|++++|.+.+++.... +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3455666788899999999999999999864 223 467888999999999999999999987543 211 235
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCC--------------------HHHHH
Q 011714 191 QTYNCLLKGLCYVGRVEEAYEMLMNVKNDGL-KPD----VYTYTAVMDGFCKVGR--------------------SNEAM 245 (479)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~--------------------~~~a~ 245 (479)
.++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 6788899999999999999999998765311 112 3477788888888998 78888
Q ss_pred HHHHHHHHC----CCC-CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CC----HhHHHHHHHHHHhcCChHHHH
Q 011714 246 ELLNEAIER----GVT-PNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCL-PD----KISYSTLLNGLLKWGKIRPAV 315 (479)
Q Consensus 246 ~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~ 315 (479)
..+++..+. +.. .....+..+...+...|++++|...+++..+.... ++ ..++..+...+...
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 236 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL------- 236 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-------
Confidence 777766432 101 11224455555556666666666665555432000 00 11333333344444
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCC-----CChhhHHHHHHHHhcCCCHHHHH
Q 011714 316 SIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSV-----TDPGTYGIVIRTLGKGKKTDEAL 390 (479)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~ 390 (479)
|++++|...+++....... ....++..+...+...|++++|.
T Consensus 237 ---------------------------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (338)
T 3ro2_A 237 ---------------------------------GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 283 (338)
T ss_dssp ---------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------------------------CCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 5555555555544321100 01346778888999999999999
Q ss_pred HHHHHHHHcC----CC-CchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 391 IHLHHAIEMG----HI-PRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 391 ~~~~~~~~~~----~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
..++++.+.. .. ....++..+..++...|++++|..+++++.+..
T Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 284 DYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 9999876541 11 113467788889999999999999999988753
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.50 E-value=8.3e-12 Score=102.37 Aligned_cols=166 Identities=15% Similarity=0.122 Sum_probs=86.0
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 011714 119 NSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLK 198 (479)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 198 (479)
+..+|..+...|...|++++|++.|++..+.. |-+..++..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34455555555555555555555555555443 2345555555555555555555555555554443 233444455555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhh
Q 011714 199 GLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMK 278 (479)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 278 (479)
.+...++++.+...+.+...... .+...+..+..++...|++++|++.|++.++.... +...|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 55555555555555555544321 23445555555555555555555555555544222 34445555555555555555
Q ss_pred HHHHHHHHHh
Q 011714 279 GVGLLKLMKK 288 (479)
Q Consensus 279 a~~~~~~~~~ 288 (479)
|+..|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=1.3e-12 Score=123.98 Aligned_cols=217 Identities=9% Similarity=-0.014 Sum_probs=158.9
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011714 135 DFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRL-KEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEML 213 (479)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 213 (479)
.++++...++...... +.+...+..+...+...|++ ++|++.|++..+.. +.+..+|..+..+|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3556666777665542 44677888888888888888 88888888887764 445778888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc--------CCh
Q 011714 214 MNVKNDGLKPDVYTYTAVMDGFCKV---------GRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKE--------GTP 276 (479)
Q Consensus 214 ~~~~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~ 276 (479)
++..+. .|+...+..+..++... |++++|+..|+++++.... +...|..+..+|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 888875 35567778888888888 8888888888888776433 567788888888877 888
Q ss_pred hhHHHHHHHHHhCCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHH
Q 011714 277 MKGVGLLKLMKKRNCL--PDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDA 354 (479)
Q Consensus 277 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a 354 (479)
++|+..|++..+.... -+...|..+..++...|++++|.+.|++..+.... +...+..+...+. ..|++++|
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~-----~lg~~~eA 311 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLE-----FLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-----HHHHHHHH
Confidence 8888888888775321 36777888888888888888888888888765322 3334444444443 55778888
Q ss_pred HHHHHHHH
Q 011714 355 YQVFEKMT 362 (479)
Q Consensus 355 ~~~~~~~~ 362 (479)
...+.++.
T Consensus 312 i~~~~~~~ 319 (474)
T 4abn_A 312 LESKGKTK 319 (474)
T ss_dssp HHHTTTCC
T ss_pred HHHhcccc
Confidence 77665544
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.48 E-value=6.7e-13 Score=118.86 Aligned_cols=239 Identities=16% Similarity=0.092 Sum_probs=156.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC------C
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSY-------GLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDN------G 150 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 150 (479)
+..++..+...+...|++++|+.+|+++.+. ..+....++..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 5667778888888888888888888887752 22334566778888888888888888888887653 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 011714 151 -YHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRI------GC-KPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND--- 219 (479)
Q Consensus 151 -~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 219 (479)
.+....++..+...+...|++++|.+.+++..+. +. +....++..+...+...|++++|++++++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1234567778888888888888888888887653 21 223456777888888889999888888887653
Q ss_pred ---CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-------CCCCCH-------hhHHHHHHHHHhcCChhhHHH
Q 011714 220 ---GLKP-DVYTYTAVMDGFCKVGRSNEAMELLNEAIER-------GVTPNV-------VTFNTLFNGYCKEGTPMKGVG 281 (479)
Q Consensus 220 ---~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~l~~~~~~~g~~~~a~~ 281 (479)
+..| ...++..+..++...|++++|...++++.+. ...+.. ..+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 3456778888888889999999888888753 111111 112222333444556666666
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 282 LLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
.++...... +....++..+..+|...|++++|...+++.++
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666665432 22456777888888888888888888888765
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=2.1e-12 Score=115.57 Aligned_cols=168 Identities=18% Similarity=0.085 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-C
Q 011714 156 TTFTILVNSLCKSGRLKEALEVLDQMGRI-------GCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND------G-L 221 (479)
Q Consensus 156 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~ 221 (479)
.++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++.... + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34444444444455555555554444431 11222334444555555555555555555544432 1 1
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC------CC-CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC-----
Q 011714 222 KPDVYTYTAVMDGFCKVGRSNEAMELLNEAIER------GV-TPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR----- 289 (479)
Q Consensus 222 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----- 289 (479)
.....++..+...+...|++++|...++++.+. +. ......+..+...+...|++++|+.+++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 112344555555566666666666666555442 11 112334556666666666666666666666443
Q ss_pred -CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 290 -NCLP-DKISYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 290 -~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
+..| ...++..+...+...|++++|...++++.+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112 234566667777777777777777777664
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.42 E-value=6.9e-11 Score=109.04 Aligned_cols=228 Identities=11% Similarity=-0.046 Sum_probs=138.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCC-CC----CHhhHHHHHHHHHhcCChhhHHHHHHHHHhC----CC-CC-CHhHHHH
Q 011714 232 MDGFCKVGRSNEAMELLNEAIERGV-TP----NVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR----NC-LP-DKISYST 300 (479)
Q Consensus 232 i~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~-~~~~~~~ 300 (479)
...+...|++++|...|+++.+... .+ ...++..+...|...|+++.|+..+++..+. +. .+ ...++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3344556666666666666654310 01 1234556666666666666666666665432 10 11 1345566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHh-----CCCCCCh
Q 011714 301 LLNGLLKWGKIRPAVSIFKEMVRF----GFEV-DERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTK-----KVSVTDP 370 (479)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~ 370 (479)
+..+|...|++++|.+.+.+.++. +..+ ...++..+-..+. ..|++++|...+++... ..+. ..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-----~~~~~~~A~~~~~~al~~~~~~~~~~-~~ 261 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD-----RSGDDQMAVEHFQKAAKVSREKVPDL-LP 261 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHHCGGG-HH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHhhCChh-HH
Confidence 666677777777777777665532 1111 1122233333332 55777777777777665 3333 25
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC---C-chHHHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCC-CCHhh
Q 011714 371 GTYGIVIRTLGKGKKTDEALIHLHHAIEMGHI---P-RTITFNNVIQALCGEGK---IDKALLLLFLMYEHAKI-PSRTS 442 (479)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~ 442 (479)
.++..+..++.+.|++++|...+++..+.... + ....+..+...+...++ +.+|+.++++ .+.. .....
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~ 338 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEAC 338 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHH
Confidence 67788888999999999999999988765221 1 12345555566777787 7777777765 2222 23345
Q ss_pred HHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 443 YDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
+..+...|...|++++|...|+++++
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67788899999999999999998875
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=3.9e-11 Score=98.23 Aligned_cols=165 Identities=15% Similarity=0.106 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS 164 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (479)
...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3455666667777777777777777766543 3456666777777777777777777777776553 3456666667777
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 011714 165 LCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEA 244 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 244 (479)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777766553 3455666666666667777777777776666543 22455666666666666666666
Q ss_pred HHHHHHHHH
Q 011714 245 MELLNEAIE 253 (479)
Q Consensus 245 ~~~~~~~~~ 253 (479)
...++.+.+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666654
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.39 E-value=1.6e-10 Score=106.50 Aligned_cols=163 Identities=12% Similarity=0.027 Sum_probs=110.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CC-CHHHHH
Q 011714 161 LVNSLCKSGRLKEALEVLDQMGRIGC-KP----NIQTYNCLLKGLCYVGRVEEAYEMLMNVKND----GL-KP-DVYTYT 229 (479)
Q Consensus 161 li~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~~ 229 (479)
....+...|++++|+..|++..+... .+ ...++..+...|...|++++|...+++..+. +. .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44455677888888888887764310 11 2346677777888888888888887776542 10 11 245667
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHC----CCC-CCHhhHHHHHHHHHhcCChhhHHHHHHHHHh-----CCCCCCHhHHH
Q 011714 230 AVMDGFCKVGRSNEAMELLNEAIER----GVT-PNVVTFNTLFNGYCKEGTPMKGVGLLKLMKK-----RNCLPDKISYS 299 (479)
Q Consensus 230 ~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 299 (479)
.+..+|...|++++|...+++.++. +.. ....++..+..+|...|++++|+..+++... .... ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 7778888888888888888777652 111 1234567777788888888888888887766 3322 356677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 011714 300 TLLNGLLKWGKIRPAVSIFKEMVRF 324 (479)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~ 324 (479)
.+...+.+.|++++|...+++..+.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7778888888888888888877653
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=3e-10 Score=104.52 Aligned_cols=201 Identities=11% Similarity=-0.040 Sum_probs=111.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC----CCC--C-CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCC----CCCHhH
Q 011714 229 TAVMDGFCKVGRSNEAMELLNEAIER----GVT--P-NVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNC----LPDKIS 297 (479)
Q Consensus 229 ~~li~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~ 297 (479)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++...... .....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 34445555556666665555555432 111 1 122344455555666666666666665543211 111234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCc--CHHHHH----HHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCC--
Q 011714 298 YSTLLNGLLKWGKIRPAVSIFKEMVRFGFEV--DERMMN----SLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTD-- 369 (479)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~----~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 369 (479)
+..+...+...|++++|...+++.......+ ...... .....+. ..|++++|...++........+.
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~A~~~~~~a~~~~~~~~~~ 251 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ-----MTGDKAAAANWLRHTAKPEFANNHF 251 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH-----HCCCHHHHHHHHHhCCCCCCCcchh
Confidence 5556666666777777777776665321111 111111 1111122 45777777777777654332211
Q ss_pred -hhhHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCCCch-HHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 011714 370 -PGTYGIVIRTLGKGKKTDEALIHLHHAIEM----GHIPRT-ITFNNVIQALCGEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 370 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (479)
...+..+..++...|++++|...++++... +..++. ..+..+..++...|+.++|...+++....
T Consensus 252 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 252 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 123566778888889999998888877643 211122 25566677788889999998888887653
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.38 E-value=3.4e-11 Score=118.97 Aligned_cols=166 Identities=13% Similarity=0.025 Sum_probs=146.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
++.+|+.|...+.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|++.|++.++.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 57889999999999999999999999998764 5568899999999999999999999999998864 446889999999
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 011714 164 SLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 243 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 243 (479)
++.+.|++++|++.|++..+.. +-+..+|+.+..+|...|++++|++.|++..+.... +...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999998875 456889999999999999999999999999886433 67889999999999999999
Q ss_pred HHHHHHHHHH
Q 011714 244 AMELLNEAIE 253 (479)
Q Consensus 244 a~~~~~~~~~ 253 (479)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888765
No 79
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.37 E-value=9.9e-09 Score=100.31 Aligned_cols=376 Identities=11% Similarity=0.023 Sum_probs=248.7
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCCh--
Q 011714 63 ASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNE---QETAVKFFSEASSYG-LAPNSWTFSIMIRCYCNKNDF-- 136 (479)
Q Consensus 63 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~-- 136 (479)
.+....+..+|+.+....+ .+...|...+..-.+.++ ++.+..+|++..... .+|++..|...+....+.++.
T Consensus 79 ~~~~~~aR~vyEraL~~fP-~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~ 157 (679)
T 4e6h_A 79 LKQWKQVYETFDKLHDRFP-LMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIIT 157 (679)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTT
T ss_pred cCcHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccccc
Confidence 4678889999999887644 478889988988888888 999999999988753 138888888888776665553
Q ss_pred ------hhHHHHHHHHHh-CCC-CC-CHHHHHHHHHHHHh---------cCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 011714 137 ------FEARKVIDCMFD-NGY-HP-NVTTFTILVNSLCK---------SGRLKEALEVLDQMGRIGCKPNIQTYNCLLK 198 (479)
Q Consensus 137 ------~~a~~~~~~~~~-~~~-~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 198 (479)
+...++|+..+. .|. .+ +...|...+..... .++++.+..+|++........-..+|.....
T Consensus 158 ~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~ 237 (679)
T 4e6h_A 158 GGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ 237 (679)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 334467776653 354 44 45678877765442 3456777888888775311111222211111
Q ss_pred HHHh-------------cCCHHH---------------------------------------------------------
Q 011714 199 GLCY-------------VGRVEE--------------------------------------------------------- 208 (479)
Q Consensus 199 ~~~~-------------~~~~~~--------------------------------------------------------- 208 (479)
.-.. ..+++.
T Consensus 238 fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~ 317 (679)
T 4e6h_A 238 WEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKL 317 (679)
T ss_dssp HHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTT
T ss_pred HHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCc
Confidence 0000 001111
Q ss_pred ----------HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 011714 209 ----------AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAM-ELLNEAIERGVTPNVVTFNTLFNGYCKEGTPM 277 (479)
Q Consensus 209 ----------a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 277 (479)
+..+|++..... +-....|...+..+...|+.++|. .+|+..... .+.+...|...+...-+.|+++
T Consensus 318 ~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e 395 (679)
T 4e6h_A 318 ELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIP 395 (679)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred cccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHH
Confidence 122233333221 113444455555566778888896 999999875 3456777888889999999999
Q ss_pred hHHHHHHHHHhCCC---------CCC------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CC-CcCHHHHH
Q 011714 278 KGVGLLKLMKKRNC---------LPD------------KISYSTLLNGLLKWGKIRPAVSIFKEMVRF-GF-EVDERMMN 334 (479)
Q Consensus 278 ~a~~~~~~~~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~ 334 (479)
+|.++|+++..... .|+ ...|...+....+.|+.+.|..+|..+.+. +. .+...+..
T Consensus 396 ~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~ 475 (679)
T 4e6h_A 396 EIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLEN 475 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 99999999876310 121 235777778888889999999999999875 21 22222222
Q ss_pred HHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC--chHHHHHHH
Q 011714 335 SLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIP--RTITFNNVI 412 (479)
Q Consensus 335 ~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~ 412 (479)
+.+... ..++.+.|..+|+...+..+. +...|...+......|+.+.|..+|++++.....+ ....|...+
T Consensus 476 A~lE~~------~~~d~e~Ar~ife~~Lk~~p~-~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~ 548 (679)
T 4e6h_A 476 AYIEYH------ISKDTKTACKVLELGLKYFAT-DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVI 548 (679)
T ss_dssp HHHHHT------TTSCCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHH
T ss_pred HHHHHH------hCCCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 222211 225589999999998876443 56778888888888999999999999998763321 345788888
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011714 413 QALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKL 450 (479)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (479)
..-...|+.+.+..+.+++.+.. |+......+++-|
T Consensus 549 ~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 549 FFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHh
Confidence 88889999999999999999875 3433434444433
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.37 E-value=3.5e-10 Score=104.12 Aligned_cols=270 Identities=11% Similarity=0.019 Sum_probs=184.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HhhHHH
Q 011714 195 CLLKGLCYVGRVEEAYEMLMNVKNDGLKPDV----YTYTAVMDGFCKVGRSNEAMELLNEAIERGV-TPN----VVTFNT 265 (479)
Q Consensus 195 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ 265 (479)
.....+...|++++|...+++........+. .++..+...+...|++++|...+++..+... ..+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3444556678888888888777665322222 2455666777888999999888888765311 011 233567
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhC----CCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc----CHHHHH
Q 011714 266 LFNGYCKEGTPMKGVGLLKLMKKR----NCL--P-DKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEV----DERMMN 334 (479)
Q Consensus 266 l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~ 334 (479)
+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+.+..+..... ....+.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 788899999999999999987653 221 2 23456778888999999999999999987643221 123333
Q ss_pred HHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCC-hhhHH-----HHHHHHhcCCCHHHHHHHHHHHHHcCCCC---ch
Q 011714 335 SLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTD-PGTYG-----IVIRTLGKGKKTDEALIHLHHAIEMGHIP---RT 405 (479)
Q Consensus 335 ~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~ 405 (479)
.+...+. ..|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+ ..
T Consensus 179 ~la~~~~-----~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 179 MLIQCSL-----ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHH-----HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHH-----HcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 4444443 67999999999998765321111 11122 23345779999999999999876543221 12
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCCH-hhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 406 ITFNNVIQALCGEGKIDKALLLLFLMYEH----AKIPSR-TSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 406 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
..+..+..++...|++++|...+++..+. +..++. ..+..+..++...|+.++|...++++++.
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 24667788899999999999999988653 211122 36667788899999999999999988763
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=5.1e-11 Score=117.71 Aligned_cols=168 Identities=13% Similarity=0.016 Sum_probs=149.1
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 011714 117 APNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCL 196 (479)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (479)
+-+..+|+.+...+.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|++.|++..+.. +-+..+|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3357789999999999999999999999999864 4468899999999999999999999999998875 4568899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 011714 197 LKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTP 276 (479)
Q Consensus 197 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 276 (479)
..++...|++++|++.|++..+.... +...|..+..+|...|++++|+..|+++++.... +...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccH
Confidence 99999999999999999999886433 6889999999999999999999999999987533 678899999999999999
Q ss_pred hhHHHHHHHHHh
Q 011714 277 MKGVGLLKLMKK 288 (479)
Q Consensus 277 ~~a~~~~~~~~~ 288 (479)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887754
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.36 E-value=9.5e-11 Score=95.86 Aligned_cols=162 Identities=14% Similarity=0.110 Sum_probs=84.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 011714 122 TFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLC 201 (479)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 201 (479)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44445555555666666666665555432 2345555555555555666666666665555442 334455555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHH
Q 011714 202 YVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVG 281 (479)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 281 (479)
..|++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.+... .+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555554432 22444455555555555555555555555544321 234444555555555555555555
Q ss_pred HHHHHH
Q 011714 282 LLKLMK 287 (479)
Q Consensus 282 ~~~~~~ 287 (479)
.++++.
T Consensus 166 ~~~~~~ 171 (186)
T 3as5_A 166 HFKKAN 171 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=3.6e-10 Score=96.09 Aligned_cols=196 Identities=13% Similarity=0.001 Sum_probs=140.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
.++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|.+.++...+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35677888888888889999999999888876533677777778888888899999998888888764 33677788888
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 011714 163 NSLCKSGRLKEALEVLDQMGRIGCKPNI-------QTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPD---VYTYTAVM 232 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li 232 (479)
.++...|++++|++.+++..+.. +.+. .+|..+...+...|++++|+..|++..+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 88888899999999888888764 3344 45777778888888899999998888765 343 45666666
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 011714 233 DGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN 290 (479)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (479)
.++... +...++++...+.. +...|.... ....+.+++|+..+++..+..
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-----HHHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 666543 34445555544322 333343333 234556788888888887754
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.30 E-value=3.7e-11 Score=105.73 Aligned_cols=226 Identities=12% Similarity=0.039 Sum_probs=157.0
Q ss_pred cCChhhHHHHHHHH-------HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHhHHHHHH
Q 011714 63 ASPLKERIDIFDSI-------KKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSY------GL-APNSWTFSIMIR 128 (479)
Q Consensus 63 ~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~ 128 (479)
.+++++|+..++.. ...+.+....++..+...+...|++++|+..|+++.+. +- +....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 34555555555443 33343446788999999999999999999999998753 21 234668889999
Q ss_pred HHHhcCChhhHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------C-CCCCHHHHH
Q 011714 129 CYCNKNDFFEARKVIDCMFDN------G-YHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRI------G-CKPNIQTYN 194 (479)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~ 194 (479)
++...|++++|.+.+++.... . .+....++..+...+...|++++|.+.+++..+. + .+....++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999998754 1 1234677888999999999999999999998764 1 122456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHccCCHH------HHHHHHHHHHHCCCCCCH
Q 011714 195 CLLKGLCYVGRVEEAYEMLMNVKND-------GLKPD-VYTYTAVMDGFCKVGRSN------EAMELLNEAIERGVTPNV 260 (479)
Q Consensus 195 ~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~li~~~~~~~~~~------~a~~~~~~~~~~~~~~~~ 260 (479)
.+...+...|++++|..++++..+. ...+. ...+..+...+...+... .+...++.... ..+...
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 252 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVN 252 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHH
Confidence 9999999999999999999988753 11222 223333333333333322 22222222111 112234
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 261 VTFNTLFNGYCKEGTPMKGVGLLKLMKKR 289 (479)
Q Consensus 261 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (479)
.++..+...|...|++++|..++++..+.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57888999999999999999999988653
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.29 E-value=7.1e-10 Score=94.25 Aligned_cols=197 Identities=13% Similarity=0.023 Sum_probs=154.5
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 011714 117 APNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCL 196 (479)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (479)
+.|+..+......+...|++++|...|+...+...+++...+..+..++...|++++|++.+++..+.. +.+..+|..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 346688889999999999999999999999987643788888889999999999999999999999875 4467789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HhhHHHH
Q 011714 197 LKGLCYVGRVEEAYEMLMNVKNDGLKPDV-------YTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPN---VVTFNTL 266 (479)
Q Consensus 197 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 266 (479)
...+...|++++|+..+++..+.... +. ..|..+...+...|++++|+..|+++++. .|+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 99999999999999999999876432 44 55778888899999999999999999876 344 4567777
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011714 267 FNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFG 325 (479)
Q Consensus 267 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 325 (479)
..+|...| ..+++++...+. .+...|.... ....+.+++|...+++..+..
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 77776544 344555555432 2344444443 334567899999999998763
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.27 E-value=8.2e-11 Score=103.48 Aligned_cols=227 Identities=16% Similarity=0.077 Sum_probs=153.4
Q ss_pred hcCCHHHHHHHHHHHHh-------CCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC------C-CCCCHHHHHHHH
Q 011714 97 MLNEQETAVKFFSEASS-------YGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDN------G-YHPNVTTFTILV 162 (479)
Q Consensus 97 ~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~li 162 (479)
..|++++|+..|++..+ ...+....++..+...+...|++++|...+++..+. + .+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 35666666666665543 222334677888999999999999999999998753 1 123466788899
Q ss_pred HHHHhcCChHHHHHHHHHHhhC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHH
Q 011714 163 NSLCKSGRLKEALEVLDQMGRI------G-CKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND------GLKP-DVYTY 228 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~ 228 (479)
.+|...|++++|.+.+++.... . .+....++..+...+...|++++|...+++..+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999988754 1 1234667888999999999999999999988764 1122 35678
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC-------CCCCC-HhhHHHHHHHHHhcCChhhHHHHHHHHH---hC--CCCCCH
Q 011714 229 TAVMDGFCKVGRSNEAMELLNEAIER-------GVTPN-VVTFNTLFNGYCKEGTPMKGVGLLKLMK---KR--NCLPDK 295 (479)
Q Consensus 229 ~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~--~~~~~~ 295 (479)
..+..++...|++++|...++++.+. ...+. ...+..+...+...+....+..+..... .. ..+...
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 88889999999999999999988763 11222 2334444444444333333322211111 11 112234
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 296 ISYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
.++..+...+...|++++|..++++.++
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5677788888899999999999888764
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.18 E-value=2e-09 Score=82.59 Aligned_cols=129 Identities=16% Similarity=0.197 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011714 87 DFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLC 166 (479)
Q Consensus 87 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (479)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|...++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34555555556666666666666655433 3344555555555555556666666555555442 234445555555555
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011714 167 KSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKN 218 (479)
Q Consensus 167 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (479)
..|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5555555555555555432 22344445555555555555555555555443
No 88
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.16 E-value=7.1e-08 Score=91.44 Aligned_cols=204 Identities=9% Similarity=-0.093 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 011714 242 NEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEM 321 (479)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (479)
+.+..+|++++... +.+...|...+..+.+.|+.++|..++++.... +.+...+. .|....+.++. ++.+
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHH
Confidence 34667888877753 335677888888888888888999998888876 32332222 12222111221 2222
Q ss_pred HHcC---------CCcC---HHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC-CCHHH
Q 011714 322 VRFG---------FEVD---ERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKG-KKTDE 388 (479)
Q Consensus 322 ~~~~---------~~~~---~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 388 (479)
.+.- ..+. ..++...+... .+.+..+.|..+|++. .. +..+...|...+..-... ++.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~-----~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ 338 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYV-----LKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRAT 338 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHH-----HHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHH-----HHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHH
Confidence 2110 0011 12222333322 2457799999999988 32 222444454333322223 36999
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 389 ALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 389 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
|..+|+...+.. +-++..+...+....+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++++
T Consensus 339 ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 339 PYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999988753 2234456667777778899999999999873 2567788888777778999999999998875
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.16 E-value=2.4e-09 Score=89.40 Aligned_cols=114 Identities=12% Similarity=0.164 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHH----------------HHHHHHhcCChhhHHHHHHHHHhCC
Q 011714 87 DFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSI----------------MIRCYCNKNDFFEARKVIDCMFDNG 150 (479)
Q Consensus 87 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (479)
.+......+...|++++|+..|++..+.. +.+...|.. +..++.+.|++++|...|++..+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 33444455566677777777777766542 222333433 4555555555555555555555442
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 011714 151 YHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYV 203 (479)
Q Consensus 151 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 203 (479)
+.+...+..+..++...|++++|+..|++..+.. +.+..+|..+...|...
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 2244555555555555555555555555555443 33444555555444433
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.15 E-value=3.1e-09 Score=93.99 Aligned_cols=208 Identities=12% Similarity=0.008 Sum_probs=126.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHH
Q 011714 100 EQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDN----GYHPN-VTTFTILVNSLCKSGRLKEA 174 (479)
Q Consensus 100 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a 174 (479)
++++|...|++. ...|...|++++|...|++.... |-+++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366777766665 33456677777777777766532 21111 45677777777778888888
Q ss_pred HHHHHHHhhCCC---CC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHccCCHHH
Q 011714 175 LEVLDQMGRIGC---KP--NIQTYNCLLKGLCYV-GRVEEAYEMLMNVKNDGLKP-D----VYTYTAVMDGFCKVGRSNE 243 (479)
Q Consensus 175 ~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~~~~~~ 243 (479)
+..+++..+... .+ -..+++.+...|... |++++|+..|++..+..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 777777654210 11 134677777777775 88888888887766531100 1 3456777778888888888
Q ss_pred HHHHHHHHHHCCCCCCH------hhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CC---HhHHHHHHHHHH--hcCCh
Q 011714 244 AMELLNEAIERGVTPNV------VTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCL-PD---KISYSTLLNGLL--KWGKI 311 (479)
Q Consensus 244 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~~~~~--~~~~~ 311 (479)
|+..|+++.+....... ..|..+..++...|++++|+..+++..+.... ++ ...+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 88888887775332221 14566677777888888888888777653211 01 112334444443 34556
Q ss_pred HHHHHHHHHHH
Q 011714 312 RPAVSIFKEMV 322 (479)
Q Consensus 312 ~~a~~~~~~~~ 322 (479)
++|...|+.+.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 66666665543
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.15 E-value=3.4e-09 Score=92.07 Aligned_cols=100 Identities=12% Similarity=0.113 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC--CCCHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN---SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGY--HPNVTTF 158 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~ 158 (479)
++..+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|++++|...|+...+... +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 55666666677777777777777777776643 223 45666777777777777777777777766421 1123455
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHhhC
Q 011714 159 TILVNSLCK--------SGRLKEALEVLDQMGRI 184 (479)
Q Consensus 159 ~~li~~~~~--------~g~~~~a~~~~~~~~~~ 184 (479)
..+..++.. .|++++|+..|++..+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 666666666 77777777777777665
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.14 E-value=3.1e-08 Score=85.98 Aligned_cols=245 Identities=9% Similarity=0.060 Sum_probs=155.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 011714 56 RFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKND 135 (479)
Q Consensus 56 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (479)
.+-+..-.|....++.-...+. .......-.-+.+++...|++... ..-.|....+..+...+ ..+
T Consensus 19 ~ikn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~- 84 (310)
T 3mv2_B 19 NIKQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK- 84 (310)
T ss_dssp HHHHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT-
T ss_pred HHHHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc-
Confidence 4445556677777776332221 111222333455777777776632 11134433444444333 222
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011714 136 FFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGC-KPNIQTYNCLLKGLCYVGRVEEAYEMLM 214 (479)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 214 (479)
|+..++++...+ +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++
T Consensus 85 ---a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 ---NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp ---CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 677777777654 45566666788888888999999999888766542 1356777788888889999999999998
Q ss_pred HHHHCCCCC-----CHHHHHHHHHHH--Hc--cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHH
Q 011714 215 NVKNDGLKP-----DVYTYTAVMDGF--CK--VGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKL 285 (479)
Q Consensus 215 ~~~~~~~~~-----~~~~~~~li~~~--~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 285 (479)
+|.+. .| +..+...++.++ .. .+++.+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.
T Consensus 161 ~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 161 NYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88764 44 245555555552 22 33888889999888665 23423334444578888999999888887
Q ss_pred HHhCC---------CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011714 286 MKKRN---------CLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRF 324 (479)
Q Consensus 286 ~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 324 (479)
+.+.- -+-+..++..+|......|+ +|.+++.++.+.
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 65431 12356666566666666676 778888888775
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.13 E-value=5.1e-09 Score=80.29 Aligned_cols=129 Identities=18% Similarity=0.227 Sum_probs=72.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 011714 122 TFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLC 201 (479)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 201 (479)
.+..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34555556666666666666666665443 2345555556666666666666666666655543 334455555555666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 011714 202 YVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIE 253 (479)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 253 (479)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666666555432 12344555555555556666666665555544
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.12 E-value=3.6e-09 Score=93.57 Aligned_cols=198 Identities=10% Similarity=0.036 Sum_probs=143.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC---CC--CHHHHHH
Q 011714 91 LLMALVMLNEQETAVKFFSEASSY----GLAPN-SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGY---HP--NVTTFTI 160 (479)
Q Consensus 91 ll~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~ 160 (479)
....+...|++++|+..|++.... |-+++ ..+|+.+..+|...|++++|+..+++..+... .+ -..+++.
T Consensus 43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 355678899999999999987643 31222 56889999999999999999999998874311 11 1457888
Q ss_pred HHHHHHhc-CChHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHH
Q 011714 161 LVNSLCKS-GRLKEALEVLDQMGRIGCK-PN----IQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDV------YTY 228 (479)
Q Consensus 161 li~~~~~~-g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~ 228 (479)
+..+|... |++++|+..|++..+.... .+ ..++..+...+.+.|++++|+..|++..+....... ..+
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 99999996 9999999999988764210 01 357888999999999999999999999886433221 256
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC---HhhHHHHHHHHH--hcCChhhHHHHHHHHHh
Q 011714 229 TAVMDGFCKVGRSNEAMELLNEAIERGVT-PN---VVTFNTLFNGYC--KEGTPMKGVGLLKLMKK 288 (479)
Q Consensus 229 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~ 288 (479)
..+..++...|++++|...|++.++.... ++ ...+..++..+. ..+++++|+..|+.+..
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 77888899999999999999998764211 01 112344555554 45667788887766544
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.11 E-value=1.4e-08 Score=88.23 Aligned_cols=180 Identities=8% Similarity=0.019 Sum_probs=126.9
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 011714 104 AVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGY-HPNVTTFTILVNSLCKSGRLKEALEVLDQMG 182 (479)
Q Consensus 104 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 182 (479)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++.++.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777888777655 55666666777888888999999988888876543 2367778888888888999999999998887
Q ss_pred hCCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 011714 183 RIGCKP-----NIQTYNCLLKGLC--YVG--RVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIE 253 (479)
Q Consensus 183 ~~~~~~-----~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 253 (479)
+. .| +..+...++.++. ..| +..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 45 2455555655532 233 788889999888664 34533444455578888999999988886654
Q ss_pred CC---------CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 011714 254 RG---------VTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN 290 (479)
Q Consensus 254 ~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (479)
.- -+.+..+...+|......|+ +|.++++++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 20 02355666566666666675 7888888888764
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.10 E-value=1.5e-09 Score=107.75 Aligned_cols=174 Identities=10% Similarity=-0.038 Sum_probs=125.4
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011714 96 VMLNEQETAVKFFSEAS--------SYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCK 167 (479)
Q Consensus 96 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 167 (479)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|.+.+++..+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 66788888888888877 432 4456677777888888888888888888887654 3467778888888888
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 011714 168 SGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMEL 247 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 247 (479)
.|++++|++.|++..+.. +.+...|..+..++.+.|++++ ++.|++..+.+.. +...|..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888877764 3456777788888888888888 8888887765432 567777888888888888888888
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 011714 248 LNEAIERGVTPNVVTFNTLFNGYCKEGT 275 (479)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 275 (479)
|+++.+.... +...+..+..++...++
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 8877765322 35566666666655554
No 97
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.09 E-value=1.6e-07 Score=82.42 Aligned_cols=224 Identities=11% Similarity=0.045 Sum_probs=133.4
Q ss_pred HHhcCCh-hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH----Hh
Q 011714 60 RIKASPL-KERIDIFDSIKKDGTNWSVSDFNDLLMALVMLN--EQETAVKFFSEASSYGLAPNSWTFSIMIRCY----CN 132 (479)
Q Consensus 60 ~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 132 (479)
.++.+.. ++|+.+++.+...++. +...|+.--..+...+ ++++++..++.+.... +.+..+|+.-...+ ..
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHh
Confidence 3344543 6788888888777655 6777887777777777 8888888888877654 44455555444443 34
Q ss_pred c---CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC--
Q 011714 133 K---NDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLK--EALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGR-- 205 (479)
Q Consensus 133 ~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 205 (479)
. +++++++++++.+.+.. +.+..+|+.-.-++.+.|.++ ++++.++++.+.+ +-|..+|+.....+.+.++
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGC
T ss_pred ccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 4 56777777777777654 446666666666666666666 7777777777654 4466666666655555554
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCChhh
Q 011714 206 ----VEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE-AMELLNEAIERG--VTPNVVTFNTLFNGYCKEGTPMK 278 (479)
Q Consensus 206 ----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 278 (479)
++++++.++++....+. |...|+.+-..+.+.|+..+ +..+..++.+.+ -..+...+..+..+|.+.|+.++
T Consensus 198 ~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 55566666555554332 55555555555555554322 333443333221 11244455555555555555555
Q ss_pred HHHHHHHHHh
Q 011714 279 GVGLLKLMKK 288 (479)
Q Consensus 279 a~~~~~~~~~ 288 (479)
|+++++.+.+
T Consensus 277 A~~~~~~l~~ 286 (306)
T 3dra_A 277 SRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.08 E-value=1.2e-07 Score=83.16 Aligned_cols=219 Identities=9% Similarity=0.013 Sum_probs=175.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC--ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc---CC
Q 011714 100 EQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKN--DFFEARKVIDCMFDNGYHPNVTTFTILVNSL----CKS---GR 170 (479)
Q Consensus 100 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~ 170 (479)
..++|+.+++.++... +-+..+|+.--.++...| +++++++.++.+.... +-+..+|+.-..++ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 3468999999998775 556677888888888888 9999999999999865 44667776655555 455 78
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC------HH
Q 011714 171 LKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVE--EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR------SN 242 (479)
Q Consensus 171 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------~~ 242 (479)
+++++++++++.+.. +.+..+|+.-.-.+.+.|.++ ++++.++++.+..+. +...|+.....+...+. ++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 999999999999876 668899999888888899888 999999999987654 88888877777777776 88
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhh-HHHHHHHHHhCC--CCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 011714 243 EAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMK-GVGLLKLMKKRN--CLPDKISYSTLLNGLLKWGKIRPAVSIFK 319 (479)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 319 (479)
++++.++.++...+. |...|+-+...+.+.|+... +..+.+++...+ -..+...+..++..+.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 999999999887554 88889988888888887554 555666665432 13467888888899999999999999999
Q ss_pred HHHH
Q 011714 320 EMVR 323 (479)
Q Consensus 320 ~~~~ 323 (479)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.08 E-value=2.9e-08 Score=83.04 Aligned_cols=175 Identities=11% Similarity=-0.005 Sum_probs=82.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 011714 139 ARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVG----RVEEAYEMLM 214 (479)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 214 (479)
|.+.|++..+.| +...+..|...|...+++++|++.|++..+.| +...+..+...|.. + ++++|+++|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 344444444432 44444444444545555555555555554433 33444444444444 3 4555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHh----cCChhhHHHHHHH
Q 011714 215 NVKNDGLKPDVYTYTAVMDGFCK----VGRSNEAMELLNEAIERGVT-PNVVTFNTLFNGYCK----EGTPMKGVGLLKL 285 (479)
Q Consensus 215 ~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 285 (479)
+..+.| +...+..+...|.. .+++++|+.+|++..+.+.. .+...+..|...|.. .+++++|+.+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554433 33444444444444 45555555555555544321 013444555555554 4455555555555
Q ss_pred HHhCCCCCCHhHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHcC
Q 011714 286 MKKRNCLPDKISYSTLLNGLLKW-G-----KIRPAVSIFKEMVRFG 325 (479)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 325 (479)
..+.+ .+...+..|...|... | +.++|..+|+...+.|
T Consensus 155 A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 55441 1233344444444332 1 5555666555555544
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.08 E-value=1.5e-09 Score=107.71 Aligned_cols=173 Identities=12% Similarity=-0.001 Sum_probs=144.9
Q ss_pred HhcCChhhHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 011714 131 CNKNDFFEARKVIDCMF--------DNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCY 202 (479)
Q Consensus 131 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 202 (479)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|++.|++..+.+ +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999998 432 4567889999999999999999999999998865 5578899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHH
Q 011714 203 VGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGL 282 (479)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 282 (479)
.|++++|++.|++..+.... +...+..+..++...|++++ +..|+++++.... +...|..+..++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999886433 67788899999999999999 9999999987543 677899999999999999999999
Q ss_pred HHHHHhCCCCCC-HhHHHHHHHHHHhcCC
Q 011714 283 LKLMKKRNCLPD-KISYSTLLNGLLKWGK 310 (479)
Q Consensus 283 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 310 (479)
|++..+.+ |+ ...+..+..++...++
T Consensus 557 ~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 99888764 43 5667777777655444
No 101
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.08 E-value=9.8e-09 Score=89.15 Aligned_cols=102 Identities=10% Similarity=-0.026 Sum_probs=75.4
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC--CCCHH
Q 011714 117 APNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPN---VTTFTILVNSLCKSGRLKEALEVLDQMGRIGC--KPNIQ 191 (479)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~ 191 (479)
+.+...+..+...+.+.|++++|...|+.+.+.. +.+ ...+..+..++.+.|++++|+..|++..+... +....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456677777788888888888888888888753 223 56777788888888888888888888877531 12245
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHHHHC
Q 011714 192 TYNCLLKGLCY--------VGRVEEAYEMLMNVKND 219 (479)
Q Consensus 192 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~ 219 (479)
++..+..++.. .|++++|+..|+++.+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 66677777777 88888888888887765
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.07 E-value=2.2e-08 Score=83.73 Aligned_cols=142 Identities=14% Similarity=0.118 Sum_probs=68.6
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC----ChhhHHHHH
Q 011714 68 ERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKN----DFFEARKVI 143 (479)
Q Consensus 68 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 143 (479)
+|+..|+...+.| ++..+..+...+...+++++|+..|++..+.| +...+..+...|.. + +.++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3444554444432 44455555555555555555555555555433 34444444444444 3 455555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 011714 144 DCMFDNGYHPNVTTFTILVNSLCK----SGRLKEALEVLDQMGRIGCK-PNIQTYNCLLKGLCY----VGRVEEAYEMLM 214 (479)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 214 (479)
++..+.| +...+..|..+|.. .+++++|+++|++..+.|.. .+..++..|...|.. .+++++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 5554433 44444445444444 44555555555555544310 013444444444444 444555555555
Q ss_pred HHHHC
Q 011714 215 NVKND 219 (479)
Q Consensus 215 ~~~~~ 219 (479)
+..+.
T Consensus 154 ~A~~~ 158 (212)
T 3rjv_A 154 GSSSL 158 (212)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 54443
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.06 E-value=9.3e-09 Score=85.82 Aligned_cols=172 Identities=12% Similarity=0.024 Sum_probs=131.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011714 54 AQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFND----------------LLMALVMLNEQETAVKFFSEASSYGLA 117 (479)
Q Consensus 54 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~A~~~~~~~~~~~~~ 117 (479)
+......+..|+.++|+..|+...+.++. +...|.. +...+.+.|++++|+..|++..+.. +
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 85 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-P 85 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-C
Confidence 44555667889999999999998876543 5666777 8999999999999999999998875 5
Q ss_pred CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHhhCCCCCCHHHHHH
Q 011714 118 PNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGR--LKEALEVLDQMGRIGCKPNIQTYNC 195 (479)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (479)
.+...+..+..++...|++++|...|++..+.. |.+..+|..+..+|...|+ .+.+...+..... ..|....+..
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~ 162 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYR 162 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHH
Confidence 678899999999999999999999999999875 4578889999888876654 4455666665542 1333334455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011714 196 LLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVM 232 (479)
Q Consensus 196 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 232 (479)
...++...|++++|+..|++..+. .|+......+.
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~ 197 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 566677789999999999998875 56655444433
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.05 E-value=3.2e-09 Score=86.05 Aligned_cols=161 Identities=17% Similarity=0.135 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 011714 88 FNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS-LC 166 (479)
Q Consensus 88 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~ 166 (479)
+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++...... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3445555666666666666666655432 3345566666666666666666666666655432 233332222111 11
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHH
Q 011714 167 KSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKP-DVYTYTAVMDGFCKVGRSNEAM 245 (479)
Q Consensus 167 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~ 245 (479)
..+...+|...+++..+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1122233455555555442 2245555555555555666666666665555543221 2334555555555555555555
Q ss_pred HHHHHHH
Q 011714 246 ELLNEAI 252 (479)
Q Consensus 246 ~~~~~~~ 252 (479)
..|++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 105
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.03 E-value=1e-06 Score=83.52 Aligned_cols=357 Identities=9% Similarity=-0.033 Sum_probs=226.6
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhC-CC-CCCHHhHHHHH
Q 011714 51 SLQAQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNE-QETAVKFFSEASSY-GL-APNSWTFSIMI 127 (479)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~A~~~~~~~~~~-~~-~~~~~~~~~l~ 127 (479)
...+.+++..++.+..+.+..+|+..... .|++..|...+....+.++ .+....+|+.+... |. +.+...|...+
T Consensus 15 R~vyer~l~~~P~~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 15 SAIMEHARRLYMSKDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 34556677777889999999999998874 4699999999998888774 45677888887653 43 34667888877
Q ss_pred HHHH----hcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------------cCChHHHHHHHHHHhhCCCCCCH
Q 011714 128 RCYC----NKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCK-------------SGRLKEALEVLDQMGRIGCKPNI 190 (479)
Q Consensus 128 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------------~g~~~~a~~~~~~~~~~~~~~~~ 190 (479)
..+. ..++.+.+.++|+..+......-...|......-.. .+.+..|..+++.+...--..+.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 7654 346788899999999874211112233332221111 12233344444444321001134
Q ss_pred HHHHHHHHHHHhcC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhH
Q 011714 191 QTYNCLLKGLCYVG--R-----VEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTF 263 (479)
Q Consensus 191 ~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 263 (479)
..|...+..-...+ - .+.+..+|+++.... +-+...|...+..+...|+.+.|..++++.+.. +.+...|
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~ 249 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHH
Confidence 46665555433221 1 345678899888753 346788888888889999999999999999987 3233333
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhC---------CC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHH
Q 011714 264 NTLFNGYCKEGTPMKGVGLLKLMKKR---------NC---LPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDER 331 (479)
Q Consensus 264 ~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 331 (479)
. .|......++. ++.+... +. ......|...+....+.++.+.|..+|..+ +.. ..+..
T Consensus 250 ~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~ 320 (493)
T 2uy1_A 250 L----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPH 320 (493)
T ss_dssp H----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHH
T ss_pred H----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChH
Confidence 2 22222222222 2222211 00 011245666666666788899999999998 321 22333
Q ss_pred HHH--HHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHH
Q 011714 332 MMN--SLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFN 409 (479)
Q Consensus 332 ~~~--~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 409 (479)
.+. +.+... ..++.+.|..+|+...+..+. ++..|...+......|+.+.|..+|+++. .....|.
T Consensus 321 v~i~~A~lE~~------~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~ 388 (493)
T 2uy1_A 321 VFIYCAFIEYY------ATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWD 388 (493)
T ss_dssp HHHHHHHHHHH------HHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHH
T ss_pred HHHHHHHHHHH------HCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHH
Confidence 332 222221 224699999999998876433 45556777888888999999999999862 2567788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHh
Q 011714 410 NVIQALCGEGKIDKALLLLFLMYE 433 (479)
Q Consensus 410 ~l~~~~~~~g~~~~a~~~~~~~~~ 433 (479)
..+..-...|+.+.+..+++++.+
T Consensus 389 ~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 389 SMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888777778999999999988874
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.02 E-value=1.1e-08 Score=90.02 Aligned_cols=167 Identities=15% Similarity=0.074 Sum_probs=98.6
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH-
Q 011714 117 APNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNC- 195 (479)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~- 195 (479)
+.+...+..+...+.+.|++++|...|++..+.. +-+...+..+..++.+.|++++|...+++.... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3344555566666666666666666666666543 335566666666666667777777766666554 233332222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcC
Q 011714 196 LLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTP-NVVTFNTLFNGYCKEG 274 (479)
Q Consensus 196 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 274 (479)
....+...++.++|...+++...... .+...+..+...+...|++++|...|.++++..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 22234455566666666666665432 255666666666777777777777776666653221 2445666667777777
Q ss_pred ChhhHHHHHHHHH
Q 011714 275 TPMKGVGLLKLMK 287 (479)
Q Consensus 275 ~~~~a~~~~~~~~ 287 (479)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 7776666666543
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=1.4e-08 Score=99.05 Aligned_cols=153 Identities=8% Similarity=-0.013 Sum_probs=100.7
Q ss_pred CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 011714 64 SPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVI 143 (479)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (479)
++.++|+..++...+.+.. +...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5667777777777655443 56777778888888888888888888877654 445677777778888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCC
Q 011714 144 DCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYV---GRVEEAYEMLMNVKNDG 220 (479)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 220 (479)
++..+.. +.+...+..+..++.+.|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+.+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 8777653 3456777777788888888888888888777654 34566777777777777 78888888887777654
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.00 E-value=2.2e-09 Score=84.37 Aligned_cols=84 Identities=11% Similarity=0.042 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 011714 123 FSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCY 202 (479)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 202 (479)
+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|+..|++..+.. +-+..+|..+...|.+
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344444444444444444444444332 2234444444444444444444444444444332 2233444444444444
Q ss_pred cCCHHH
Q 011714 203 VGRVEE 208 (479)
Q Consensus 203 ~~~~~~ 208 (479)
.|++++
T Consensus 112 ~~~~~~ 117 (150)
T 4ga2_A 112 NDVTDG 117 (150)
T ss_dssp HCSSSS
T ss_pred cCChHH
Confidence 444433
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.99 E-value=3.3e-09 Score=83.34 Aligned_cols=141 Identities=10% Similarity=-0.066 Sum_probs=67.6
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 011714 165 LCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEA 244 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 244 (479)
+...|++++|++.+....... +.+...+..+...|.+.|++++|++.|++..+.... +..+|..+..++...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHH
Confidence 334455555555555544321 112233444555555555555555555555544322 455555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHH-HHHHHhCCCCCCHhHHHHHHHHHHhcC
Q 011714 245 MELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGL-LKLMKKRNCLPDKISYSTLLNGLLKWG 309 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 309 (479)
+..|++.++.... +...+..+...|.+.|++++|.+. +++..+... -+...|......+...|
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 5555555554322 344555555555555555544433 344444321 13344444444444333
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.99 E-value=6.4e-08 Score=81.84 Aligned_cols=186 Identities=9% Similarity=-0.010 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH---HHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLA-P-NSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNV---TTFT 159 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 159 (479)
...+..+...+...|++++|+..|+++.+.... | ....+..+..++.+.|++++|+..|+.+.+.... +. ..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHHH
Confidence 344455555666666666666666666543211 1 1245555666666666666666666666654211 11 1233
Q ss_pred HHHHHHH------------------hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011714 160 ILVNSLC------------------KSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGL 221 (479)
Q Consensus 160 ~li~~~~------------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 221 (479)
.+..++. ..|+.++|+..|+++.+.. +-+..++...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----------~~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----------HHHHHHH-----
Confidence 3333333 2456777777777776552 1122222111100 0000000
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 011714 222 KPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPN--VVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN 290 (479)
Q Consensus 222 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (479)
......+...+.+.|++++|+..|+.+++...... ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01113456677788888888888888877532211 2457777888888888888888888877764
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.99 E-value=2e-08 Score=88.47 Aligned_cols=167 Identities=13% Similarity=0.084 Sum_probs=107.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-H
Q 011714 152 HPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYT-A 230 (479)
Q Consensus 152 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ 230 (479)
+.+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3455566666677777777777777777776653 4456677777777777777777777777765542 3333222 2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CCHhHHHHHHHHHHhcC
Q 011714 231 VMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCL-PDKISYSTLLNGLLKWG 309 (479)
Q Consensus 231 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 309 (479)
....+...++.++|...+++..+... .+...+..+...+...|++++|+..++++.+.... .+...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 22234556666677777777766533 25666777777777777777777777777665322 12456777777777777
Q ss_pred ChHHHHHHHHHHH
Q 011714 310 KIRPAVSIFKEMV 322 (479)
Q Consensus 310 ~~~~a~~~~~~~~ 322 (479)
+.++|...+++.+
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 7777777766654
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.97 E-value=1.3e-07 Score=79.87 Aligned_cols=198 Identities=10% Similarity=0.010 Sum_probs=121.8
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHH--HHH
Q 011714 259 NVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCL-P-DKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDER--MMN 334 (479)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~ 334 (479)
+...+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|...|+++++........ .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455667778899999999999999999875322 1 13567788899999999999999999998764332211 122
Q ss_pred HHHHHHhccc-------------chhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 011714 335 SLLRGLCMKS-------------WEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGH 401 (479)
Q Consensus 335 ~l~~~~~~~~-------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 401 (479)
.+...+...+ ....|+.++|...|+++.+..+. +...+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH-----
Confidence 2222221100 00124455555555555443322 11111111000 0000000
Q ss_pred CCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCC
Q 011714 402 IPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIP--SRTSYDMLITKLDQLEKSYDACALYGAALKQGVIPQR 475 (479)
Q Consensus 402 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 475 (479)
......+...+.+.|++++|+..|+++++..... ....+..++.+|.+.|++++|.+.++.+...+..-..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 0011345667888999999999999999875221 1256888999999999999999999999887644333
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.97 E-value=9.5e-09 Score=83.24 Aligned_cols=159 Identities=13% Similarity=0.054 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HH
Q 011714 123 FSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKG-LC 201 (479)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 201 (479)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|+..+++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3444455555555555555555554332 2244555555555555555555555555554432 233222211111 11
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCChhhHH
Q 011714 202 YVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTP-NVVTFNTLFNGYCKEGTPMKGV 280 (479)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~ 280 (479)
..+...+|+..+++..+... -+...+..+..++...|++++|...|+++++....+ +...+..+..++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 11111223444444443321 134444444444444444444444444444432211 1223444444444444444444
Q ss_pred HHHHH
Q 011714 281 GLLKL 285 (479)
Q Consensus 281 ~~~~~ 285 (479)
..|++
T Consensus 165 ~~y~~ 169 (176)
T 2r5s_A 165 SKYRR 169 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.96 E-value=2.6e-08 Score=97.07 Aligned_cols=152 Identities=10% Similarity=-0.003 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011714 99 NEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVL 178 (479)
Q Consensus 99 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 178 (479)
|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45555666665555432 3345555555566666666666666666655543 234555555666666666666666666
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHC
Q 011714 179 DQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV---GRSNEAMELLNEAIER 254 (479)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~ 254 (479)
++..+.. +.+...+..+..++...|++++|.+.+++..+... .+...+..+..++... |+.++|.+.+++..+.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 6555543 33455555566666666666666666666555422 2445555555555555 5666666666655554
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.95 E-value=2e-08 Score=89.43 Aligned_cols=197 Identities=11% Similarity=0.004 Sum_probs=120.3
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHH
Q 011714 63 ASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVM-LNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARK 141 (479)
Q Consensus 63 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 141 (479)
+++..+|..+++...+.... + +.. .++++.|...|.++ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 45566777777666543211 0 111 46666666666654 345666777777777
Q ss_pred HHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 011714 142 VIDCMFDN----GYHP-NVTTFTILVNSLCKSGRLKEALEVLDQMGRI----GCKP--NIQTYNCLLKGLCYVGRVEEAY 210 (479)
Q Consensus 142 ~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~ 210 (479)
.|.+.... +-.. -..+|+.+..+|...|++++|+..|++..+. | .+ -..++..+...|.. |++++|+
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 77766532 1000 1346667777777778887777777765432 2 11 13456667777777 8888888
Q ss_pred HHHHHHHHCCCC---C--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HhhHHHHHHHHHhcCChhhHH
Q 011714 211 EMLMNVKNDGLK---P--DVYTYTAVMDGFCKVGRSNEAMELLNEAIER----GVTPN-VVTFNTLFNGYCKEGTPMKGV 280 (479)
Q Consensus 211 ~~~~~~~~~~~~---~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~ 280 (479)
..|++....... + ...++..+...+...|++++|+..|++.++. +..+. ...+..+..++...|++++|+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 887776543110 0 1356677777888888888888888877653 11111 124555666677778888888
Q ss_pred HHHHHHH
Q 011714 281 GLLKLMK 287 (479)
Q Consensus 281 ~~~~~~~ 287 (479)
..+++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8888777
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.85 E-value=4.1e-06 Score=74.25 Aligned_cols=136 Identities=12% Similarity=0.036 Sum_probs=81.1
Q ss_pred hhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-C-ChhhHHHH
Q 011714 66 LKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLN-EQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNK-N-DFFEARKV 142 (479)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~ 142 (479)
.++|+++++.+...++. +..+|+.--..+...| .+++++.+++.+.... +.+..+|+.-..++.+. + +.++++++
T Consensus 70 se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 36677777777766654 6666777666666666 4777777777777654 45566666655555554 5 66666777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 011714 143 IDCMFDNGYHPNVTTFTILVNSLCKSGRLK--------EALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGR 205 (479)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 205 (479)
++.+.+.. +.|..+|+.-.-++.+.|.++ ++++.++++.+.. +-|..+|+.....+.+.++
T Consensus 148 ~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 148 IHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp HHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccc
Confidence 77666553 335556655444444444444 5555555555543 3355555555555555443
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.83 E-value=5.5e-06 Score=73.48 Aligned_cols=222 Identities=9% Similarity=0.000 Sum_probs=172.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-ChHHH
Q 011714 98 LNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKN-DFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKS-G-RLKEA 174 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~a 174 (479)
.+..++|+++++++.... +-+..+|+.--.++...| .+++++++++.+.... +-+..+|+.-..++.+. + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence 344468999999998775 556777888888888888 5999999999999875 45888888877777776 7 89999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC------
Q 011714 175 LEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVE--------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR------ 240 (479)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------ 240 (479)
+++++++.+.. +.+..+|+...-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.++
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchH
Confidence 99999999876 568888888777777666666 999999999987654 88899988888888876
Q ss_pred -HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh--------------------hhHHHHHHHHHhCC-----CCCC
Q 011714 241 -SNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTP--------------------MKGVGLLKLMKKRN-----CLPD 294 (479)
Q Consensus 241 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~~~ 294 (479)
++++++.+++++...+. |...|+-+-..+.+.|+. .........+...+ -.++
T Consensus 223 ~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 68999999999887544 888888877777777664 23333333333322 1357
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011714 295 KISYSTLLNGLLKWGKIRPAVSIFKEMVRF 324 (479)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 324 (479)
......++..|...|+.++|.++++.+.+.
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 888999999999999999999999998743
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.83 E-value=3.4e-07 Score=76.51 Aligned_cols=129 Identities=11% Similarity=-0.044 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011714 87 DFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLC 166 (479)
Q Consensus 87 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (479)
.+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|...++...+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556667777788888888877663 5567777777888888888888888888777654 446677777777788
Q ss_pred hcCChHHHHHHHHHHhhCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011714 167 KSGRLKEALEVLDQMGRIGCK--------------P-NIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDG 220 (479)
Q Consensus 167 ~~g~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 220 (479)
..|++++|.+.|++..+.... | ....+..+..++...|++++|...|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 888888888888777764311 1 12566677777777777777777777777653
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.81 E-value=5.4e-07 Score=75.25 Aligned_cols=129 Identities=12% Similarity=-0.086 Sum_probs=100.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 011714 122 TFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLC 201 (479)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 201 (479)
.+..+...+...|++++|...|++.. .|+...+..+..++...|++++|++.+++..+.. +.+..++..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556677778888888888888763 5577888888888888888888988888887764 456778888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 011714 202 YVGRVEEAYEMLMNVKNDGLK--------------P-DVYTYTAVMDGFCKVGRSNEAMELLNEAIERG 255 (479)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 255 (479)
..|++++|+..|++..+.... | ....+..+..++...|++++|...|+.+.+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 888888888888888775321 1 12667777888888888888888888887753
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.81 E-value=1.1e-06 Score=77.50 Aligned_cols=160 Identities=11% Similarity=0.035 Sum_probs=77.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-CC----HHHHHHH
Q 011714 127 IRCYCNKNDFFEARKVIDCMFDNGY-HPNV----TTFTILVNSLCKSGRLKEALEVLDQMGRIGCK-PN----IQTYNCL 196 (479)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 196 (479)
+..+...|++++|..++++..+... .++. ..+..+...+...|++++|++.+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4555666666666666666654321 1111 12223444455555666666666666542111 11 2245556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HhhHHH
Q 011714 197 LKGLCYVGRVEEAYEMLMNVKND-----GLKP-DVYTYTAVMDGFCKVGRSNEAMELLNEAIER----GVTPN-VVTFNT 265 (479)
Q Consensus 197 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ 265 (479)
...|...|++++|+..|++..+. +..+ ...++..+...|.+.|++++|...+++.++. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66666666666666666555421 1111 1224455555555566666665555554432 11111 334455
Q ss_pred HHHHHHhcCC-hhhHHHHHHHH
Q 011714 266 LFNGYCKEGT-PMKGVGLLKLM 286 (479)
Q Consensus 266 l~~~~~~~g~-~~~a~~~~~~~ 286 (479)
+..+|.+.|+ +++|.+.+++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 5555555553 35555555444
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.81 E-value=2.6e-07 Score=73.59 Aligned_cols=129 Identities=12% Similarity=0.065 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS 164 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (479)
...+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3455666667777777777777777766543 4456666677777777777777777777766553 3356666666667
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 011714 165 LCKSGRLKEALEVLDQMGRIGCKPNIQTYNC--LLKGLCYVGRVEEAYEMLMNV 216 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~ 216 (479)
+...|++++|.+.+++..+.. +.+...+.. .+..+...|++++|+..+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 777777777777777666543 223334422 223355556666666666544
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.80 E-value=2.1e-07 Score=70.39 Aligned_cols=97 Identities=12% Similarity=0.105 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSL 165 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (479)
..+......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..++..++.+ +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 445556666666667777776666666543 4456666666666666666666666666666543 33556666666666
Q ss_pred HhcCChHHHHHHHHHHhhC
Q 011714 166 CKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~ 184 (479)
...|++++|++.|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 6666666666666666654
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.78 E-value=3.2e-07 Score=68.95 Aligned_cols=113 Identities=17% Similarity=0.200 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS 164 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (479)
...|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4556666677777777777777777766543 3455666666666777777777777777666543 3355666666666
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 011714 165 LCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGL 200 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (479)
+...|++++|...++++.+.. +.+...+..+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 666677777777666666543 23344444444433
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.78 E-value=8.4e-07 Score=78.31 Aligned_cols=166 Identities=12% Similarity=0.067 Sum_probs=125.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH----HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CC----HHH
Q 011714 88 FNDLLMALVMLNEQETAVKFFSEASSYG-LAPNS----WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYH-PN----VTT 157 (479)
Q Consensus 88 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~ 157 (479)
+...+..+...|++++|..++++..+.. ..|+. ..+..+...+...|++++|...+++....... ++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3344778889999999999999988643 12222 13335667777888999999999999874322 22 336
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh----C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HH
Q 011714 158 FTILVNSLCKSGRLKEALEVLDQMGR----I-GCKP-NIQTYNCLLKGLCYVGRVEEAYEMLMNVKND----GLKPD-VY 226 (479)
Q Consensus 158 ~~~li~~~~~~g~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~ 226 (479)
++.+..+|...|++++|...|++..+ . +..+ ...++..+...|.+.|++++|+..+++..+. +..+. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 89999999999999999999999874 1 1122 2347888999999999999999999987653 22222 67
Q ss_pred HHHHHHHHHHccCC-HHHHHHHHHHHHH
Q 011714 227 TYTAVMDGFCKVGR-SNEAMELLNEAIE 253 (479)
Q Consensus 227 ~~~~li~~~~~~~~-~~~a~~~~~~~~~ 253 (479)
+|..+..++.+.|+ +++|.+.++++..
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88899999999995 6999999988765
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.77 E-value=7.2e-08 Score=75.31 Aligned_cols=98 Identities=7% Similarity=-0.067 Sum_probs=63.6
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011714 371 GTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKL 450 (479)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (479)
..+..+...+.+.|++++|+..|++++.... .+...|..+..++...|++++|+..|+++.+.. +.++..|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 4555666666667777777777776666432 245566666666777777777777777766654 33556666666777
Q ss_pred hccCCHhHHHHHHHHHHhCC
Q 011714 451 DQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 451 ~~~g~~~~A~~~~~~~~~~~ 470 (479)
.+.|++++|...|+++++..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 77777777777777766643
No 126
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.75 E-value=4.2e-08 Score=76.71 Aligned_cols=86 Identities=19% Similarity=0.071 Sum_probs=40.5
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALL 426 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 426 (479)
..|++++|...|+.....++. +...|..+..++...|++++|+..|++++.... .+...+..+..++...|++++|+.
T Consensus 33 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~~A~~ 110 (148)
T 2vgx_A 33 QSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLLQXGELAEAES 110 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHHH
Confidence 345555555555554444332 344444455555555555555555555444321 133444444445555555555555
Q ss_pred HHHHHHhC
Q 011714 427 LLFLMYEH 434 (479)
Q Consensus 427 ~~~~~~~~ 434 (479)
.|++.++.
T Consensus 111 ~~~~al~~ 118 (148)
T 2vgx_A 111 GLFLAQEL 118 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.74 E-value=4.5e-07 Score=68.50 Aligned_cols=93 Identities=12% Similarity=0.036 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 011714 159 TILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 238 (479)
Q Consensus 159 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 238 (479)
......|.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|+..+++..+.+. .+...|..+..++...
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHC
Confidence 333344444444444444444433332 22333444444444444444444444444433221 1233344444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 011714 239 GRSNEAMELLNEAIE 253 (479)
Q Consensus 239 ~~~~~a~~~~~~~~~ 253 (479)
|++++|.+.|++.++
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
No 128
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.73 E-value=5.4e-07 Score=80.14 Aligned_cols=164 Identities=12% Similarity=-0.025 Sum_probs=123.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCC-CHHH
Q 011714 88 FNDLLMALVMLNEQETAVKFFSEASSY----GLAP-NSWTFSIMIRCYCNKNDFFEARKVIDCMFDN----GYHP-NVTT 157 (479)
Q Consensus 88 ~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 157 (479)
|+.....+...|++++|...|.+.... +-.. -..+|..+..+|...|++++|...|++..+. |-+. -..+
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 118 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344466788899999999999987643 2111 1457888999999999999999999987643 2111 2457
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHH
Q 011714 158 FTILVNSLCKSGRLKEALEVLDQMGRIGC---KP--NIQTYNCLLKGLCYVGRVEEAYEMLMNVKND----GLKPD-VYT 227 (479)
Q Consensus 158 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~ 227 (479)
+..+..+|.. |++++|++.|++..+... .+ ...++..+...|.+.|++++|+..|++.... +..+. ...
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 7888888988 999999999998765310 11 1467888999999999999999999998763 21111 235
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 011714 228 YTAVMDGFCKVGRSNEAMELLNEAI 252 (479)
Q Consensus 228 ~~~li~~~~~~~~~~~a~~~~~~~~ 252 (479)
+..+..++...|++++|...|++..
T Consensus 198 ~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 198 CIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6677778888899999999999988
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.73 E-value=3.8e-06 Score=74.04 Aligned_cols=165 Identities=10% Similarity=-0.006 Sum_probs=85.7
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC---CCC--HH
Q 011714 122 TFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPN-----VTTFTILVNSLCKSGRLKEALEVLDQMGRIGC---KPN--IQ 191 (479)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~ 191 (479)
.+...+..+...|++++|.+.++...+...... ...+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344455566666777777776666655421111 01223344455556666666666666553211 111 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC----CCC-CH
Q 011714 192 TYNCLLKGLCYVGRVEEAYEMLMNVKN---D-GLKP--DVYTYTAVMDGFCKVGRSNEAMELLNEAIERG----VTP-NV 260 (479)
Q Consensus 192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 260 (479)
+++.+...|...|++++|+..+++..+ . +..+ ...++..+..+|...|++++|...+++.++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 566666666666666666666666542 1 1111 11355566666666666666666666654321 000 13
Q ss_pred hhHHHHHHHHHhcCChhhH-HHHHHHH
Q 011714 261 VTFNTLFNGYCKEGTPMKG-VGLLKLM 286 (479)
Q Consensus 261 ~~~~~l~~~~~~~g~~~~a-~~~~~~~ 286 (479)
.+|..+..+|.+.|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4455555666666666666 4444443
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.72 E-value=3.7e-07 Score=69.52 Aligned_cols=118 Identities=12% Similarity=0.048 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
.+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 355666666777777777777777777766543 3456666666666667777777777777666543 33556666666
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 011714 163 NSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYV 203 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 203 (479)
.++...|++++|.+.+++..+.. +.+...+..+..++...
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 66666777777777766666542 22334444444444443
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.71 E-value=2.8e-06 Score=74.94 Aligned_cols=169 Identities=11% Similarity=0.017 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC---CCC--
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN-----SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGY---HPN-- 154 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~-- 154 (479)
...+...+..+...|++++|++.+.+..+...... ...+..+...+...|++++|...+++...... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34556677888999999999999998876542211 12344566777888999999999999875321 112
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhh---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-
Q 011714 155 VTTFTILVNSLCKSGRLKEALEVLDQMGR---I-GCKP--NIQTYNCLLKGLCYVGRVEEAYEMLMNVKND----GLKP- 223 (479)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 223 (479)
..+++.+...|...|++++|...|++..+ . +..+ ...++..+...|...|++++|+..+++..+. +...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45889999999999999999999998873 2 1111 1258889999999999999999999987653 1111
Q ss_pred CHHHHHHHHHHHHccCCHHHH-HHHHHHHHH
Q 011714 224 DVYTYTAVMDGFCKVGRSNEA-MELLNEAIE 253 (479)
Q Consensus 224 ~~~~~~~li~~~~~~~~~~~a-~~~~~~~~~ 253 (479)
-..+|..+..+|.+.|++++| ...+++...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 167788999999999999999 777877654
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.71 E-value=7.5e-07 Score=70.89 Aligned_cols=127 Identities=13% Similarity=0.020 Sum_probs=67.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 011714 122 TFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLC 201 (479)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 201 (479)
.+..+...+...|++++|...++...+.. +.+..++..+..++...|++++|.+.+++..+.. +.+..++..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 44455555566666666666666665542 2345555556666666666666666666655543 334555555555566
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHH
Q 011714 202 YVGRVEEAYEMLMNVKNDGLKPDVYTYT--AVMDGFCKVGRSNEAMELLNEA 251 (479)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~ 251 (479)
..|++++|...+++..+.... +...+. ..+..+...|++++|...+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666555543221 233332 2222244455555555555443
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.71 E-value=5.1e-07 Score=68.43 Aligned_cols=119 Identities=12% Similarity=0.060 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
+...+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34555666666666777777777777666543 3455566666666666666766666666666543 334556666666
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 011714 164 SLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGR 205 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 205 (479)
++...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 6666666666666666665543 3345555555555555444
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.70 E-value=7.4e-08 Score=84.45 Aligned_cols=98 Identities=12% Similarity=0.060 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..++.+.|++++|...++...+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34555666666666677777777776666543 3355666666666666666666666666666543 334556666666
Q ss_pred HHHhcCChHHHHHHHHHHhh
Q 011714 164 SLCKSGRLKEALEVLDQMGR 183 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~ 183 (479)
++...|++++|...|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.69 E-value=5.4e-07 Score=70.28 Aligned_cols=99 Identities=16% Similarity=0.069 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
+...+..+...+.+.|++++|+..|+++.... +.+...|..+..++...|++++|...|++..+.. |.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 34556666666777777777777777766654 4456666667777777777777777777766553 335566666667
Q ss_pred HHHhcCChHHHHHHHHHHhhC
Q 011714 164 SLCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~ 184 (479)
+|...|++++|...|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777766665
No 136
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.67 E-value=1.3e-06 Score=65.55 Aligned_cols=95 Identities=21% Similarity=0.271 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011714 157 TFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFC 236 (479)
Q Consensus 157 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 236 (479)
.+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|..+++++.+.. +.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 33334444444444444444444443322 2233334444444444444444444444443321 113333444444444
Q ss_pred ccCCHHHHHHHHHHHHH
Q 011714 237 KVGRSNEAMELLNEAIE 253 (479)
Q Consensus 237 ~~~~~~~a~~~~~~~~~ 253 (479)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 44444444444444433
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.67 E-value=1.5e-06 Score=74.46 Aligned_cols=187 Identities=11% Similarity=-0.021 Sum_probs=103.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHhHHHH-------HHHHHhcCChhhHHHHHHHHHhCCCCCC---------------
Q 011714 97 MLNEQETAVKFFSEASSYGLAPNSWTFSIM-------IRCYCNKNDFFEARKVIDCMFDNGYHPN--------------- 154 (479)
Q Consensus 97 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 154 (479)
..++...|.+.|.++.... +-....|..+ ...+.+.++..++...+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 4677777777777777654 4446666666 3444444444554444444332 1111
Q ss_pred -------HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--H
Q 011714 155 -------VTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPD--V 225 (479)
Q Consensus 155 -------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 225 (479)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1223345556666777777777776666543 333344555556666777777777776443321 111 2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 226 YTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPN--VVTFNTLFNGYCKEGTPMKGVGLLKLMKKR 289 (479)
Q Consensus 226 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (479)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2455556666666666666666666654322132 224445555666666666666666666654
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.66 E-value=3.3e-07 Score=75.80 Aligned_cols=133 Identities=12% Similarity=-0.026 Sum_probs=56.3
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC--
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDN----GY-HPNVTTFTILVNSLCKSGRLKEALEVLDQMGRI----GCKP-- 188 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-- 188 (479)
..++..+...+...|++++|...+++.... +. +....++..+...+...|++++|.+.+++..+. +..+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 334444444444555555555544444321 00 112233444445555555555555555444321 1011
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011714 189 NIQTYNCLLKGLCYVGRVEEAYEMLMNVKND----GLK-PDVYTYTAVMDGFCKVGRSNEAMELLNEAI 252 (479)
Q Consensus 189 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 252 (479)
...++..+...+...|++++|...+++.... +.. ....++..+...+...|++++|...+++..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 1223444444555555555555555444321 100 001223444445555555555555554443
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=2.8e-07 Score=80.71 Aligned_cols=196 Identities=11% Similarity=-0.010 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011714 154 NVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMD 233 (479)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 233 (479)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++..+... .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 34555566666666666666666666666543 33556666666666666777777666666665432 24556666666
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHH
Q 011714 234 GFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRP 313 (479)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 313 (479)
++...|++++|...|+.+.+.... +...+...+....+. .++.. +........+.+......+. .+ ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~-~l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLT-RL-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHH-HH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHH-HH-HHHHHHH
Confidence 677777777777777666553110 000111111111110 11111 11122222223333332222 22 2567777
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHh
Q 011714 314 AVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTK 363 (479)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~ 363 (479)
|.+.++...+. .|+......-+..... ...+.++++..+|..+.+
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~---~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEA---KHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHH---HHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHH---HHHHHHHHHHHHHHhhhc
Confidence 77777666543 4444333333333221 123566777777776654
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.64 E-value=1.3e-06 Score=66.17 Aligned_cols=94 Identities=12% Similarity=0.060 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 011714 158 FTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK 237 (479)
Q Consensus 158 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 237 (479)
+..+...+...|++++|.+.+++..... +.+...+..+...+...|++++|...+++..... +.+...+..+..++..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 3334444444444444444444443332 2233344444444444444444444444443321 1123344444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 011714 238 VGRSNEAMELLNEAIE 253 (479)
Q Consensus 238 ~~~~~~a~~~~~~~~~ 253 (479)
.|++++|...+++..+
T Consensus 93 ~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4444444444444443
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.64 E-value=4e-07 Score=75.30 Aligned_cols=157 Identities=8% Similarity=-0.073 Sum_probs=116.9
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CCHHhHHHHHHHHHhcCC
Q 011714 61 IKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASS----YGLA-PNSWTFSIMIRCYCNKND 135 (479)
Q Consensus 61 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~ 135 (479)
+..|++++|..+++.+.. +.......+..+...+...|++++|+..+++... .+.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 457888999986655543 3334678899999999999999999999999765 2212 235678888899999999
Q ss_pred hhhHHHHHHHHHhC----CCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC---CCCC--HHHHHHHHHHHHhcC
Q 011714 136 FFEARKVIDCMFDN----GYH--PNVTTFTILVNSLCKSGRLKEALEVLDQMGRIG---CKPN--IQTYNCLLKGLCYVG 204 (479)
Q Consensus 136 ~~~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~~ 204 (479)
+++|.+.+++..+. +-. .....+..+...+...|++++|...+++..... ..+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999987643 211 124567888899999999999999999876421 0111 234678888999999
Q ss_pred CHHHHHHHHHHHHH
Q 011714 205 RVEEAYEMLMNVKN 218 (479)
Q Consensus 205 ~~~~a~~~~~~~~~ 218 (479)
++++|...+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987754
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.64 E-value=9.6e-07 Score=67.19 Aligned_cols=95 Identities=11% Similarity=0.043 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011714 157 TFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFC 236 (479)
Q Consensus 157 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 236 (479)
.+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|+..+++..+... .+...+..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHHH
Confidence 34444444444444444444444443332 22333444444444444444444444444433221 13334444444444
Q ss_pred ccCCHHHHHHHHHHHHH
Q 011714 237 KVGRSNEAMELLNEAIE 253 (479)
Q Consensus 237 ~~~~~~~a~~~~~~~~~ 253 (479)
..|++++|...|++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 44444444444444433
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.64 E-value=3.2e-07 Score=74.16 Aligned_cols=121 Identities=10% Similarity=0.178 Sum_probs=88.3
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH-HHhcCCh--hh
Q 011714 62 KASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRC-YCNKNDF--FE 138 (479)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~ 138 (479)
..++.++|+..++...+.+.. +...|..+...+...|++++|+..|+++.+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 356677788888777665543 67788888888888888888888888877654 4466677777777 6777887 88
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 011714 139 ARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIG 185 (479)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 185 (479)
|...++...+.. +.+...+..+..++...|++++|...|++..+..
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 888888887664 3456777778888888888888888888877653
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.63 E-value=3.3e-07 Score=74.09 Aligned_cols=120 Identities=12% Similarity=0.133 Sum_probs=80.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCh--HH
Q 011714 97 MLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS-LCKSGRL--KE 173 (479)
Q Consensus 97 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~ 173 (479)
..|++++|+..+++..+.. +.+...+..+..++...|++++|...|+...+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4567777777777766554 4566677777777777777777777777776653 3356666666666 6677776 77
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011714 174 ALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND 219 (479)
Q Consensus 174 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 219 (479)
|...+++..+.. +.+...+..+...+...|++++|...+++..+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777777653 345666777777777777777777777777665
No 145
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.62 E-value=7.9e-05 Score=65.73 Aligned_cols=130 Identities=9% Similarity=0.040 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC--
Q 011714 67 KERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNE----------QETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKN-- 134 (479)
Q Consensus 67 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 134 (479)
++|+.+++.+...++. +..+|+.=-..+...+. +++++.+++.+.... +.+..+|+.-..++...+
T Consensus 47 ~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 47 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcc
Confidence 3555555555554433 44444443333322222 344455555544432 334444444444444444
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 011714 135 DFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGR-LKEALEVLDQMGRIGCKPNIQTYNCLLKGL 200 (479)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (479)
++++++.+++.+.+.. +.|..+|+.-.-++...|. ++++++.++++.+.. +-|..+|+.....+
T Consensus 125 ~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll 189 (331)
T 3dss_A 125 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLL 189 (331)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 2445555555555443 2344444444444444444 345555555554443 33444444443333
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.61 E-value=2.5e-07 Score=72.19 Aligned_cols=27 Identities=15% Similarity=-0.009 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 011714 156 TTFTILVNSLCKSGRLKEALEVLDQMG 182 (479)
Q Consensus 156 ~~~~~li~~~~~~g~~~~a~~~~~~~~ 182 (479)
..|..+..++...|++++|++.|++..
T Consensus 56 ~~~~~lg~~~~~~g~~~~A~~~~~~al 82 (148)
T 2vgx_A 56 RFFLGLGACRQAMGQYDLAIHSYSYGA 82 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.60 E-value=1.2e-06 Score=74.94 Aligned_cols=197 Identities=10% Similarity=0.020 Sum_probs=147.2
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------
Q 011714 62 KASPLKERIDIFDSIKKDGTNWSVSDFNDL-------LMALVMLNEQETAVKFFSEASSYGLAPN--------------- 119 (479)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------- 119 (479)
..++...|++.|..+.+.++. ....|..+ ...+.+.++..+++..+..... +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 568889999999999988766 77888887 5677776666777666665553 2222
Q ss_pred -------HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--H
Q 011714 120 -------SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN--I 190 (479)
Q Consensus 120 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~ 190 (479)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 2234456778889999999999999988654 443366667778999999999999998665432 121 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 011714 191 QTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPD--VYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTL 266 (479)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 266 (479)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.... |+...+..|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 4678889999999999999999999985433243 4466677888999999999999999998864 444334333
No 148
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.60 E-value=1.3e-06 Score=64.08 Aligned_cols=102 Identities=12% Similarity=0.019 Sum_probs=88.2
Q ss_pred ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--CHhhHHHH
Q 011714 369 DPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIP--SRTSYDML 446 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l 446 (479)
+...+..+...+...|++++|+..++++.+... .+...+..+..++...|++++|+..+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 456788889999999999999999999987643 357788889999999999999999999999875 44 67889999
Q ss_pred HHHHhcc-CCHhHHHHHHHHHHhCCCC
Q 011714 447 ITKLDQL-EKSYDACALYGAALKQGVI 472 (479)
Q Consensus 447 ~~~~~~~-g~~~~A~~~~~~~~~~~~~ 472 (479)
..++... |++++|.+.++++++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 9999999 9999999999999886543
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.59 E-value=2.7e-07 Score=71.48 Aligned_cols=86 Identities=12% Similarity=-0.027 Sum_probs=48.1
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALL 426 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 426 (479)
..|++++|...|+.....++. +...|..+..++...|++++|+..|+++..... .+...+..+..++...|++++|+.
T Consensus 30 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~ 107 (142)
T 2xcb_A 30 QAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHLQLGDLDGAES 107 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCCHHHHHH
Confidence 445666666666655554433 445555555666666666666666666555422 234445555555666666666666
Q ss_pred HHHHHHhC
Q 011714 427 LLFLMYEH 434 (479)
Q Consensus 427 ~~~~~~~~ 434 (479)
.|++..+.
T Consensus 108 ~~~~al~~ 115 (142)
T 2xcb_A 108 GFYSARAL 115 (142)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66655544
No 150
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.59 E-value=1.3e-06 Score=78.62 Aligned_cols=123 Identities=8% Similarity=-0.051 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------HHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN---------------SWTFSIMIRCYCNKNDFFEARKVIDCMFD 148 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (479)
+...+..+...+.+.|++++|+..|++..+.. +.+ ..+|..+..++.+.|++++|+..++..++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566777777777777777777777776543 112 24455555555555555555555555554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011714 149 NGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEA 209 (479)
Q Consensus 149 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 209 (479)
.. +.+...|..+..+|...|++++|+..|++..+.. +.+..++..+..++.+.|+.+++
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 32 2244455555555555555555555555554442 22344444444555555544444
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.58 E-value=3.3e-06 Score=62.47 Aligned_cols=98 Identities=16% Similarity=0.108 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS 164 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (479)
+..+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4455666666666777777777777666543 3355566666666666666666666666666543 2345566666666
Q ss_pred HHhcCChHHHHHHHHHHhhC
Q 011714 165 LCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~ 184 (479)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 66666666666666666554
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.56 E-value=1.1e-06 Score=66.37 Aligned_cols=96 Identities=13% Similarity=-0.060 Sum_probs=60.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 011714 372 TYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLD 451 (479)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (479)
.|..+...+...|++++|+..|+++++.. +.+...|..+..++...|++++|+..+++.++.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 45555666666666666666666666542 2245566666666666666666666666666654 335556666666666
Q ss_pred ccCCHhHHHHHHHHHHhC
Q 011714 452 QLEKSYDACALYGAALKQ 469 (479)
Q Consensus 452 ~~g~~~~A~~~~~~~~~~ 469 (479)
..|++++|...|+++++.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 666666666666666653
No 153
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.55 E-value=6.2e-05 Score=66.41 Aligned_cols=96 Identities=11% Similarity=0.055 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHHHH
Q 011714 172 KEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVG--RVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR-SNEAMELL 248 (479)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~ 248 (479)
++++.+++.+.... +-+..+|+.-.-.+.+.+ .+++++.+++.+.+.... +..+|+.-.-.+...|. ++++++.+
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 44444444444432 334444444444444444 244555555555444322 44444444444444444 34555555
Q ss_pred HHHHHCCCCCCHhhHHHHHHHH
Q 011714 249 NEAIERGVTPNVVTFNTLFNGY 270 (479)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~~ 270 (479)
+.+++..+. |...|+.....+
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll 189 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLL 189 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHH
T ss_pred HHHHHHCCC-CHHHHHHHHHHH
Confidence 555544332 444444443333
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.54 E-value=2.9e-06 Score=63.95 Aligned_cols=98 Identities=14% Similarity=0.054 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS 164 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (479)
...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...++...+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 4456666667777777777777777766554 4456667777777777777777777777766653 3356666667777
Q ss_pred HHhcCChHHHHHHHHHHhhC
Q 011714 165 LCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~ 184 (479)
+...|++++|.+.|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777666554
No 155
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.53 E-value=2.2e-06 Score=77.10 Aligned_cols=87 Identities=8% Similarity=-0.130 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 011714 191 QTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGY 270 (479)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (479)
.+|..+..+|.+.|++++|+..+++..+... .+...+..+..+|...|++++|...|+++++.... +...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 4444555555555555555555555544321 13444555555555555555555555555544221 344445555555
Q ss_pred HhcCChhhH
Q 011714 271 CKEGTPMKG 279 (479)
Q Consensus 271 ~~~g~~~~a 279 (479)
.+.|+.+++
T Consensus 275 ~~~~~~~~a 283 (336)
T 1p5q_A 275 QRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.51 E-value=5.2e-07 Score=68.30 Aligned_cols=99 Identities=14% Similarity=0.062 Sum_probs=68.3
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC--CCC----HhhHH
Q 011714 371 GTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAK--IPS----RTSYD 444 (479)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~ 444 (479)
..+..++..+.+.|++++|++.|+++++... .+...|..+..+|...|++++|+..+++.++... .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3456677777778888888888887776532 2466677777778888888888888877776431 111 13566
Q ss_pred HHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 445 MLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
.++.++...|++++|++.|+++++..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 67777777888888888888777643
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.49 E-value=3.1e-06 Score=63.92 Aligned_cols=98 Identities=15% Similarity=0.113 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC--CCC----HHHHH
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGY--HPN----VTTFT 159 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 159 (479)
..+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|++.++..++... .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 445666777777777777777777776654 44566677777777777777777777776654311 111 12455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhC
Q 011714 160 ILVNSLCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 160 ~li~~~~~~g~~~~a~~~~~~~~~~ 184 (479)
.+..++...|++++|++.|++....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566666666666666666665553
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.49 E-value=1.8e-06 Score=68.71 Aligned_cols=98 Identities=8% Similarity=-0.039 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHH
Q 011714 331 RMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNN 410 (479)
Q Consensus 331 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 410 (479)
..+..+...+. ..|++++|...|++.....+. +...|..+..+|...|++++|+..++++++... .+...|..
T Consensus 12 ~~~~~~g~~~~-----~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~ 84 (164)
T 3sz7_A 12 DKLKSEGNAAM-----ARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 34444444444 668888888888888776554 667788888888888888888888888877532 24667777
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 411 VIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
+..++...|++++|+..|++.++..
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC
Confidence 8888888888888888888887764
No 159
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.48 E-value=8.2e-06 Score=76.35 Aligned_cols=167 Identities=11% Similarity=0.006 Sum_probs=105.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cCH---HHHHHHHHHHhcccchhhccHHHHHHHHHHHHh----CCCCC-
Q 011714 298 YSTLLNGLLKWGKIRPAVSIFKEMVRFGFE-VDE---RMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTK----KVSVT- 368 (479)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~---~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~- 368 (479)
+..+...|...|++++|.+.+..+.+.-.. ++. ......+..+. ...|+.+.+..+++.... .+..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 133 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFE----QVPDSLDDQIFVCEKSIEFAKREKRVFL 133 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHC----SCCSCHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHhCccHH
Confidence 455667777777777777777765532111 111 12222233332 245777888877776543 22221
Q ss_pred ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHc--CC--CC-chHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC--C-CC-C
Q 011714 369 DPGTYGIVIRTLGKGKKTDEALIHLHHAIEM--GH--IP-RTITFNNVIQALCGEGKIDKALLLLFLMYEHA--K-IP-S 439 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~-~ 439 (479)
-..++..++..+...|++++|..+++++... +. .+ ...++..++..|...|++++|..++++..... . .| .
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 213 (434)
T 4b4t_Q 134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQ 213 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchH
Confidence 2356777888888999999999988887643 11 11 23467788888889999999998888776431 1 11 1
Q ss_pred --HhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 440 --RTSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 440 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
...+..++..+...|++++|...|..+.+
T Consensus 214 ~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 214 TVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 24456667777888899998888877765
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.48 E-value=9.3e-06 Score=59.94 Aligned_cols=97 Identities=12% Similarity=-0.006 Sum_probs=52.5
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 011714 121 WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGL 200 (479)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (479)
..+..+...+...|++++|...++...... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344555555555666666666666555442 2345555555555555566666666555555442 23444555555555
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 011714 201 CYVGRVEEAYEMLMNVKND 219 (479)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~ 219 (479)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5555555555555555543
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.48 E-value=3.3e-06 Score=64.69 Aligned_cols=98 Identities=17% Similarity=-0.035 Sum_probs=55.6
Q ss_pred ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011714 369 DPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLIT 448 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (479)
+...+..+...+...|++++|+..|++++.... .+...+..+..++...|++++|+..+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 344555555566666666666666666555421 234555555556666666666666666665543 334555555666
Q ss_pred HHhccCCHhHHHHHHHHHHh
Q 011714 449 KLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 449 ~~~~~g~~~~A~~~~~~~~~ 468 (479)
+|...|++++|...|+++++
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666666554
No 162
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.47 E-value=1.8e-06 Score=66.72 Aligned_cols=99 Identities=10% Similarity=-0.040 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
+...+..+...+.+.|++++|+..|+++.... +.+...|..+..++...|++++|...|+...... +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 34445556666777777777777777776654 4466667777777777777777777777777654 345666667777
Q ss_pred HHHhcCChHHHHHHHHHHhhC
Q 011714 164 SLCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~ 184 (479)
++...|++++|.+.|++..+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777776654
No 163
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.47 E-value=1.5e-06 Score=65.08 Aligned_cols=97 Identities=12% Similarity=-0.083 Sum_probs=83.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 011714 372 TYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLD 451 (479)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (479)
.+..+...+.+.|++++|+..++++++... .+...|..+..++...|++++|+..+++.++.. +.+...+..+..+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 466677888999999999999999998632 367788899999999999999999999999886 447788999999999
Q ss_pred ccCCHhHHHHHHHHHHhCC
Q 011714 452 QLEKSYDACALYGAALKQG 470 (479)
Q Consensus 452 ~~g~~~~A~~~~~~~~~~~ 470 (479)
..|++++|...++++++..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999998753
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.45 E-value=4.2e-06 Score=68.90 Aligned_cols=122 Identities=17% Similarity=0.115 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----------------HhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNS----------------WTFSIMIRCYCNKNDFFEARKVIDCMFD 148 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (479)
...+..+...+...|++++|+..|++..+.. +.+. ..+..+..++...|++++|...++...+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4456667777888888888888888877643 1121 4555555555555555555555555554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011714 149 NGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEA 209 (479)
Q Consensus 149 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 209 (479)
.. +.+...+..+..++...|++++|.+.|++..+.. +.+..++..+..++...++..++
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 42 2344555555555555555555555555555442 22344444444444444443333
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.44 E-value=4e-06 Score=61.35 Aligned_cols=98 Identities=11% Similarity=0.034 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC--CHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHP--NVTTFTILV 162 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li 162 (479)
...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3445555566666666666666666655543 3345555556666666666666666666665542 22 355555555
Q ss_pred HHHHhc-CChHHHHHHHHHHhhC
Q 011714 163 NSLCKS-GRLKEALEVLDQMGRI 184 (479)
Q Consensus 163 ~~~~~~-g~~~~a~~~~~~~~~~ 184 (479)
.++... |++++|.+.+++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 566666 6666666666665544
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.43 E-value=2.6e-06 Score=64.43 Aligned_cols=109 Identities=15% Similarity=0.175 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC--CCC----HHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGY--HPN----VTTF 158 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 158 (479)
...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++....... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456666677777777777777777766543 44566666677777777777777777776664321 111 5556
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 011714 159 TILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCL 196 (479)
Q Consensus 159 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (479)
..+..++...|++++|.+.|++..+. .|+...+..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 66666666667777777766666654 2344444333
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.43 E-value=4e-06 Score=64.20 Aligned_cols=100 Identities=12% Similarity=0.051 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
.+...|..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...++...+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 356667777777777777777777777776654 4456677777777777777777777777777653 33566777777
Q ss_pred HHHHhcCChHHHHHHHHHHhhC
Q 011714 163 NSLCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~ 184 (479)
.++...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 7777777777777777766543
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.41 E-value=4.9e-06 Score=66.11 Aligned_cols=99 Identities=13% Similarity=0.039 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
+...|..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|+..++...+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45566777777777777777777777776654 4456677777777777777777777777777653 335666777777
Q ss_pred HHHhcCChHHHHHHHHHHhhC
Q 011714 164 SLCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~ 184 (479)
++...|++++|.+.|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777776654
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=1.5e-05 Score=61.77 Aligned_cols=110 Identities=16% Similarity=0.115 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN----SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTF 158 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 158 (479)
.+...+..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...++...+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 35667777888888888888888888888765 344 5677777778888888888888888777653 3356777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 011714 159 TILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCL 196 (479)
Q Consensus 159 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (479)
..+..++...|++++|...|++..+.. +.+...+..+
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHH
Confidence 777777888888888888888777653 2234444333
No 170
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.39 E-value=5e-06 Score=68.47 Aligned_cols=103 Identities=11% Similarity=0.050 Sum_probs=74.3
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011714 371 GTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKL 450 (479)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (479)
..|..+..++...|++++|+..++++++.. +.+...+..+..++...|++++|+..|++..+.. +.+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 578888999999999999999999998863 3367788899999999999999999999999875 44778888888888
Q ss_pred hccCCHhHHH-HHHHHHHhCCCCCCC
Q 011714 451 DQLEKSYDAC-ALYGAALKQGVIPQR 475 (479)
Q Consensus 451 ~~~g~~~~A~-~~~~~~~~~~~~p~~ 475 (479)
...++..++. ..+..+...|...+.
T Consensus 167 ~~~~~~~~~~~~~~~~~f~~~~~~~~ 192 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFDKGPLYEE 192 (198)
T ss_dssp HHHHHHHC------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhc
Confidence 8888888887 677777776654443
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=2.3e-05 Score=60.65 Aligned_cols=95 Identities=16% Similarity=0.055 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011714 156 TTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN----IQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAV 231 (479)
Q Consensus 156 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 231 (479)
..+..+...+...|++++|.+.|++..+. .|+ ...+..+...+...|++++|+..+++..+... .+...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHHHH
Confidence 33444444444444444444444444433 122 33344444444444444444444444433211 123344444
Q ss_pred HHHHHccCCHHHHHHHHHHHHH
Q 011714 232 MDGFCKVGRSNEAMELLNEAIE 253 (479)
Q Consensus 232 i~~~~~~~~~~~a~~~~~~~~~ 253 (479)
..++...|++++|...|++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.34 E-value=5.5e-06 Score=61.92 Aligned_cols=94 Identities=10% Similarity=-0.055 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011714 88 FNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCK 167 (479)
Q Consensus 88 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 167 (479)
+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++..+.. +.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3444455555666666666666655543 3345555555666666666666666666655543 2245555555556666
Q ss_pred cCChHHHHHHHHHHhh
Q 011714 168 SGRLKEALEVLDQMGR 183 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~ 183 (479)
.|++++|+..+++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666665554
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.32 E-value=6.9e-06 Score=62.03 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=54.7
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC--CCC----HHHHH
Q 011714 121 WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGC--KPN----IQTYN 194 (479)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~ 194 (479)
..+..+...+...|++++|...++...... +.+...+..+..++...|++++|...+++...... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555566666666666666666665543 33455566666666666666666666666554320 111 44555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 011714 195 CLLKGLCYVGRVEEAYEMLMNVKND 219 (479)
Q Consensus 195 ~l~~~~~~~~~~~~a~~~~~~~~~~ 219 (479)
.+...+...|++++|.+.|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5555555555666665555555543
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=7.1e-05 Score=69.93 Aligned_cols=201 Identities=9% Similarity=0.029 Sum_probs=131.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 011714 53 QAQRFVDRIKASPLKERIDIFDSIKKDGTNWS----------------VSDFNDLLMALVMLNEQETAVKFFSEASSYG- 115 (479)
Q Consensus 53 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~- 115 (479)
.+...-..++.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+.+.-
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 33444456778999999999988875443211 1246778888999999999998888765321
Q ss_pred CCCCH----HhHHHHHHHHHhcCChhhHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--
Q 011714 116 LAPNS----WTFSIMIRCYCNKNDFFEARKVIDCMFD----NGYHP-NVTTFTILVNSLCKSGRLKEALEVLDQMGRI-- 184 (479)
Q Consensus 116 ~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-- 184 (479)
..++. .+.+.+...+...|+.+.|..+++.... .+..+ -..++..+...|...|++++|..+++++...
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 01111 1223333444456788888888877653 22222 2456777888888888888888888876542
Q ss_pred --CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 011714 185 --GC-KPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND----GLKPD--VYTYTAVMDGFCKVGRSNEAMELLNEAIE 253 (479)
Q Consensus 185 --~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 253 (479)
+- +....++..++..|...|++++|..++++.... +.++. ...+..+...+...|++++|...|.+..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 112457778888888888888888888776542 11111 24455666667778888888887776654
No 175
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.29 E-value=8e-06 Score=63.06 Aligned_cols=96 Identities=17% Similarity=0.090 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC------c-----hHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-------
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIEMGHIP------R-----TITFNNVIQALCGEGKIDKALLLLFLMYEH------- 434 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------- 434 (479)
+......+...|++++|+..|+++++..... + ...|..+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 4556666777888888888888877653220 1 227888888888899999999888888876
Q ss_pred CCCCCHhhH----HHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 435 AKIPSRTSY----DMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 435 ~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
. +.+...| .....++...|++++|+..|+++++.
T Consensus 94 ~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 N-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp T-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4 3355677 88888999999999999999998873
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.27 E-value=1.7e-05 Score=59.87 Aligned_cols=86 Identities=13% Similarity=0.019 Sum_probs=43.6
Q ss_pred hhccHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCc---hHHHHHHHHHHHcCCC
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDP---GTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPR---TITFNNVIQALCGEGK 420 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~ 420 (479)
..|++++|...|+.+....+. +. ..+..+..++...|++++|+..++++.+.... + ...+..+..++...|+
T Consensus 14 ~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~~~g~ 91 (129)
T 2xev_A 14 KNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQYGEGK 91 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHcCC
Confidence 445555555555555543332 12 34445555555555555555555555543211 1 3344455555555555
Q ss_pred HHHHHHHHHHHHhC
Q 011714 421 IDKALLLLFLMYEH 434 (479)
Q Consensus 421 ~~~a~~~~~~~~~~ 434 (479)
+++|+..|+++.+.
T Consensus 92 ~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 92 NTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555554
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.26 E-value=3.3e-06 Score=79.83 Aligned_cols=115 Identities=13% Similarity=-0.025 Sum_probs=92.1
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALL 426 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 426 (479)
..|++++|...|++..+..+. +...|..+..++.+.|++++|++.++++.+... .+...+..+..+|...|++++|++
T Consensus 18 ~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 668999999999998887554 678899999999999999999999999998632 357788899999999999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHH--HhccCCHhHHHHHHH
Q 011714 427 LLFLMYEHAKIPSRTSYDMLITK--LDQLEKSYDACALYG 464 (479)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 464 (479)
.++++.+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 96 ~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999998875 3345566666666 888899999999988
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.26 E-value=3.8e-05 Score=57.82 Aligned_cols=94 Identities=13% Similarity=0.070 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC---HHHHHHHH
Q 011714 89 NDLLMALVMLNEQETAVKFFSEASSYGLAPNS---WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPN---VTTFTILV 162 (479)
Q Consensus 89 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li 162 (479)
..+...+...|++++|+..|+++.+.. +.+. ..+..+..++...|++++|...++...+.. +.+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 345555666677777777777666542 2222 355566666666677777776666666543 222 44556666
Q ss_pred HHHHhcCChHHHHHHHHHHhhC
Q 011714 163 NSLCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~ 184 (479)
.++...|++++|...|+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666666654
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.20 E-value=2.2e-06 Score=63.68 Aligned_cols=88 Identities=14% Similarity=-0.005 Sum_probs=65.3
Q ss_pred hhccHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVS--VTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKA 424 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 424 (479)
..|++++|+..|++..+.+. ..+...+..+..++...|++++|+..++++++.... +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 35788888888888887631 124567888888888999999999999988876432 567788888888889999999
Q ss_pred HHHHHHHHhCC
Q 011714 425 LLLLFLMYEHA 435 (479)
Q Consensus 425 ~~~~~~~~~~~ 435 (479)
+..+++..+..
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99988888764
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.18 E-value=1.1e-06 Score=83.08 Aligned_cols=123 Identities=12% Similarity=0.061 Sum_probs=87.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011714 89 NDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKS 168 (479)
Q Consensus 89 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (479)
..+...+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|.+.+++..+.. +.+...|..+..+|...
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 334445567788888888888887654 4457788888888888888888888888888764 44677888888888888
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 011714 169 GRLKEALEVLDQMGRIGCKPNIQTYNCLLKG--LCYVGRVEEAYEMLM 214 (479)
Q Consensus 169 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 214 (479)
|++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 88 g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888887653 2233445555444 777788888888877
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.18 E-value=1.2e-05 Score=63.61 Aligned_cols=88 Identities=11% Similarity=0.011 Sum_probs=54.4
Q ss_pred hhccHHHHHHHHHHHHhC--------CC---------CCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKK--------VS---------VTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFN 409 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 409 (479)
+.|++++|...|...... .+ ..+...|..+..+|.+.|++++|+..++++++.. +.+...|.
T Consensus 23 ~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~ 101 (162)
T 3rkv_A 23 VQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALF 101 (162)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHH
Confidence 557777777777766543 00 0022456666666777777777777777766643 22455666
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 410 NVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 410 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
.+..++...|++++|+..|++..+..
T Consensus 102 ~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 102 RRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 66667777777777777777766653
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.17 E-value=1.2e-05 Score=63.33 Aligned_cols=95 Identities=13% Similarity=0.129 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHH
Q 011714 158 FTILVNSLCKSGRLKEALEVLDQMGRI----GCKP-NIQTYNCLLKGLCYVGRVEEAYEMLMNVKND----GLK-PDVYT 227 (479)
Q Consensus 158 ~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 227 (479)
+..+...+...|++++|.+.+++..+. +.++ ...++..+...+...|++++|...+++..+. +.. .....
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 344444444445555544444443321 0000 0223344444444555555555544443321 100 01223
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 011714 228 YTAVMDGFCKVGRSNEAMELLNEAI 252 (479)
Q Consensus 228 ~~~li~~~~~~~~~~~a~~~~~~~~ 252 (479)
+..+...+...|++++|.+.+++..
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3444444444555555555544443
No 183
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.17 E-value=9e-05 Score=56.66 Aligned_cols=114 Identities=13% Similarity=0.009 Sum_probs=96.1
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHc----CCCHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCG----EGKID 422 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 422 (479)
-.+++++|...|++..+.+.. ... +...|...+..++|+++|++..+.| +...+..+...|.. .++++
T Consensus 7 ~~~d~~~A~~~~~~aa~~g~~---~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELNEM---FGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTCT---THH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CccCHHHHHHHHHHHHcCCCH---hhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence 347889999999998887632 333 7788888888999999999998864 66778888888887 89999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHhc----cCCHhHHHHHHHHHHhCCC
Q 011714 423 KALLLLFLMYEHAKIPSRTSYDMLITKLDQ----LEKSYDACALYGAALKQGV 471 (479)
Q Consensus 423 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 471 (479)
+|+.+|++..+.+ +...+..|...|.. .++.++|.++|+++.+.|.
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999999999886 67888889999988 8999999999999999875
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.16 E-value=1.7e-05 Score=62.39 Aligned_cols=134 Identities=12% Similarity=0.015 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhCC----CCC-C
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLA-PN----SWTFSIMIRCYCNKNDFFEARKVIDCMFDNG----YHP-N 154 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 154 (479)
..++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..+.. .++ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456788888889999999999999987643101 11 2467888889999999999999999876431 111 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011714 155 VTTFTILVNSLCKSGRLKEALEVLDQMGRI----GCK-PNIQTYNCLLKGLCYVGRVEEAYEMLMNVKN 218 (479)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (479)
..++..+..++...|++++|.+.+++..+. +.. ....++..+...+...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456778888899999999999999887643 211 1235677888899999999999999988764
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.16 E-value=2.7e-05 Score=70.82 Aligned_cols=138 Identities=11% Similarity=0.017 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSL 165 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (479)
..+..+...+.+.|++++|+..|++..+.- +... .... .+..... -+.+..+|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~-------~~~~~~~-~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAE-------DADGAKL-QPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSC-------HHHHGGG-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccC-------hHHHHHH-HHHHHHHHHHHHHHH
Confidence 346667777778888888888888776410 0000 0000 0000001 012344555555555
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 011714 166 CKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAM 245 (479)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 245 (479)
.+.|++++|++.+++..+.. +.+..+|..+..+|...|++++|+..|++..+... -+...+..+..++...++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666665555555543 23455555555555666666666666655554421 13444555555555555544443
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.14 E-value=2.9e-05 Score=73.04 Aligned_cols=138 Identities=12% Similarity=-0.040 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS 164 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (479)
...|..+...+.+.|++++|+..|+++.+.. +.+. .+ .-+... ... +.....|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~-~~-----------~~~~~~----~~~----~~~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEY-GL-----------SEKESK----ASE----SFLLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCC-SC-----------CHHHHH----HHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccc-cC-----------ChHHHH----HHH----HHHHHHHHHHHHH
Confidence 4556667777777777777777777766532 1110 00 000000 000 0013445555555
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 011714 165 LCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEA 244 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 244 (479)
|.+.|++++|+..+++..+.. +.+..+|..+..+|...|++++|+..|++..+... -+...+..+..++.+.++.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555443 33455555555555555555555555555554321 1334455555555555555544
Q ss_pred H
Q 011714 245 M 245 (479)
Q Consensus 245 ~ 245 (479)
.
T Consensus 405 ~ 405 (457)
T 1kt0_A 405 D 405 (457)
T ss_dssp H
T ss_pred H
Confidence 3
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.14 E-value=3.7e-05 Score=60.78 Aligned_cols=100 Identities=20% Similarity=0.198 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CC----------CCCHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSY-------GL----------APNSWTFSIMIRCYCNKNDFFEARKVIDCM 146 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-------~~----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 146 (479)
.+..+......+.+.|++++|+..|.+.... .- +.+...|..+..+|.+.|++++|+..++..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456777888888899999999999887653 00 112244555555555556666666655555
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 011714 147 FDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 147 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 184 (479)
++.. +.+...|..+..++...|++++|...|++..+.
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 5443 334555555555555555666555555555544
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.12 E-value=0.00015 Score=69.77 Aligned_cols=174 Identities=9% Similarity=0.010 Sum_probs=108.2
Q ss_pred hcCC-hhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 011714 62 KASP-LKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNE----------QETAVKFFSEASSYGLAPNSWTFSIMIRCY 130 (479)
Q Consensus 62 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (479)
+.+. .++|+..++.+...++. +..+|+.--..+...|+ +++++..++.+.+.. +.+..+|+.-.-++
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444 36677778777776655 66677766666666665 777777777777654 55666777766666
Q ss_pred HhcC--ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc----
Q 011714 131 CNKN--DFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSG-RLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYV---- 203 (479)
Q Consensus 131 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 203 (479)
.+.+ +++++++.++++.+.. +.+..+|+.-..++.+.| .++++++.++++.+.. +-+..+|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCC
T ss_pred HHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccc
Confidence 6777 5577777777777664 346667766666666666 6777777777777654 44666666666655542
Q ss_pred ----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 011714 204 ----------GRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 240 (479)
Q Consensus 204 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 240 (479)
+.++++++.+++.....+. +...|..+-..+.+.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCC
Confidence 3345555555555543222 44455544444444444
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.10 E-value=0.00021 Score=68.92 Aligned_cols=174 Identities=6% Similarity=-0.043 Sum_probs=137.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC----------hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011714 100 EQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKND----------FFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSG 169 (479)
Q Consensus 100 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 169 (479)
..++|++.++++.... +-+..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-.-++.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3468899999998765 5566778777777766666 899999999999875 458888888888888888
Q ss_pred --ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc--------
Q 011714 170 --RLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVG-RVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV-------- 238 (479)
Q Consensus 170 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 238 (479)
+++++++.++++.+.. +-+..+|+....++.+.| .++++++.++++.+..+. +...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 6799999999999876 568889998888888888 899999999999887644 788888777766653
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhh
Q 011714 239 ------GRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMK 278 (479)
Q Consensus 239 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 278 (479)
+.++++++.++.++..... +...|.-+-..+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4578888999888876433 67778877777777776443
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.09 E-value=5.6e-05 Score=71.10 Aligned_cols=132 Identities=9% Similarity=-0.075 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011714 154 NVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN---------------IQTYNCLLKGLCYVGRVEEAYEMLMNVKN 218 (479)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (479)
....|..+...+.+.|++++|+..|++..+.. +.+ ..+|..+..+|.+.|++++|+..+++..+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 45555556666666666666666666655432 111 57889999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHH-HHHHHHh
Q 011714 219 DGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVG-LLKLMKK 288 (479)
Q Consensus 219 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~ 288 (479)
... .+...|..+..+|...|++++|+..|+++++.... +...+..+..++.+.++.+++.+ ++..|..
T Consensus 346 ~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 346 LDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 753 37888999999999999999999999999987433 66788889999999998887764 4555543
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.05 E-value=5.7e-05 Score=68.72 Aligned_cols=121 Identities=11% Similarity=-0.000 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011714 157 TFTILVNSLCKSGRLKEALEVLDQMGRI---------------GCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGL 221 (479)
Q Consensus 157 ~~~~li~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 221 (479)
.+..+...+.+.|++++|++.|++..+. -.+.+..+|..+..+|.+.|++++|+..+++..+...
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 4556666777777777777777766641 0012334555555666666666666666666655432
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhH
Q 011714 222 KPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKG 279 (479)
Q Consensus 222 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 279 (479)
.+...+..+..+|...|++++|+..|+++.+.... +...+..+..++...++.+++
T Consensus 305 -~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 305 -SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 24555555556666666666666666665554221 344444444444444444333
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.04 E-value=1.6e-05 Score=58.86 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011714 157 TFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNV 216 (479)
Q Consensus 157 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 216 (479)
.+..+..+|...|++++|+..|++..+.. +-+..++..+..++...|++++|+..+++.
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33334444444444444444444443332 222333334444444444444444444443
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.04 E-value=0.00018 Score=54.97 Aligned_cols=109 Identities=7% Similarity=-0.008 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 011714 100 EQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCK----SGRLKEAL 175 (479)
Q Consensus 100 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~ 175 (479)
++++|++.|++..+.| .+... +...|...+.+++|.+.|++..+.| +...+..|..+|.. .++.++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3445555555555444 22222 3344444444444555555554432 34444444444444 44455555
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 011714 176 EVLDQMGRIGCKPNIQTYNCLLKGLCY----VGRVEEAYEMLMNVKND 219 (479)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 219 (479)
++|++..+.| +...+..|...|.. .+++++|.++|++..+.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555544433 33344444444444 44444444444444443
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.94 E-value=2.7e-05 Score=69.99 Aligned_cols=149 Identities=11% Similarity=0.027 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS 164 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (479)
...+..+...+.+.|++++|+..|++.... .|+... +...++..++...+ ....|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHH
Confidence 345667777778888888888888887754 333221 11222222222211 11366677777
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCHHH
Q 011714 165 LCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDG-FCKVGRSNE 243 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~ 243 (479)
|.+.|++++|+..+++..+.. +.+..+|..+..+|...|++++|...|++..+.... +...+..+... ....+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888777654 446677777778888888888888888777654221 33444444444 233455666
Q ss_pred HHHHHHHHHHC
Q 011714 244 AMELLNEAIER 254 (479)
Q Consensus 244 a~~~~~~~~~~ 254 (479)
+...|..+...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 77777777654
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.92 E-value=1.3e-05 Score=58.60 Aligned_cols=95 Identities=12% Similarity=-0.063 Sum_probs=74.7
Q ss_pred ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC------Hhh
Q 011714 369 DPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPS------RTS 442 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~ 442 (479)
+...+..+...+...|++++|++.++++++.. +.+...+..+..++...|++++|+..+++.++.. +.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence 44567888899999999999999999998863 2367788899999999999999999999999875 223 556
Q ss_pred HHHHHHHHhccCCHhHHHHHHHH
Q 011714 443 YDMLITKLDQLEKSYDACALYGA 465 (479)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~ 465 (479)
+..+..++...|+.++|.+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHH
Confidence 66777777777777766655443
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.88 E-value=4.7e-05 Score=68.47 Aligned_cols=148 Identities=14% Similarity=0.009 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011714 156 TTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGF 235 (479)
Q Consensus 156 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 235 (479)
..+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 34555666666777777777777776654 233221 112222222222111 12455666666
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHH-HHhcCChHHH
Q 011714 236 CKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNG-LLKWGKIRPA 314 (479)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a 314 (479)
.+.|++++|+..++..++... .+...|..+..+|...|++++|+..|++..+.... +...+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777666666432 25556666666677777777777776666554211 23333333333 2233455566
Q ss_pred HHHHHHHHHc
Q 011714 315 VSIFKEMVRF 324 (479)
Q Consensus 315 ~~~~~~~~~~ 324 (479)
...|..+...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 6666666543
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.88 E-value=0.00025 Score=54.75 Aligned_cols=61 Identities=20% Similarity=0.127 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhC-------CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 011714 157 TFTILVNSLCKSGRLKEALEVLDQMGRI-------GCKPNIQTY----NCLLKGLCYVGRVEEAYEMLMNVKN 218 (479)
Q Consensus 157 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (479)
.|..+..++.+.|++++|+..+++.++. . +-+...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555555555556655555555555443 2 2233344 5555555555555555555555543
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.86 E-value=0.00014 Score=55.95 Aligned_cols=121 Identities=18% Similarity=0.090 Sum_probs=91.1
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCH----------HHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKT----------DEALIHLHHAIEMGHIPRTITFNNVIQALC 416 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 416 (479)
+.+.+++|...++...+.++. +...|..+..++...+++ ++|+..|+++++.... +..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 567889999999999988766 788898888888888764 5999999999986432 5678999999998
Q ss_pred cCC-----------CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCCCC
Q 011714 417 GEG-----------KIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIPQRKP 477 (479)
Q Consensus 417 ~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 477 (479)
..| ++++|+..|+++++.. |+...|...+.. .++|.+++-..-..+..-+.++
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al~~------~~ka~el~~~~~~~~~~~~~~~ 155 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLEM------TAKAPQLHAEAYKQGLGGSHHH 155 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH------HHTHHHHHHHHHHSSSCSCCCS
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHHHH------HHhCHhccCcccccccCccccc
Confidence 764 8999999999999874 665555544443 3455666666666665554443
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.81 E-value=2e-05 Score=57.49 Aligned_cols=93 Identities=9% Similarity=-0.011 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC------HHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPN------VTT 157 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~ 157 (479)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.++...+.. +.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence 45566667777777777777777777776653 4456667777777777777777777777776543 112 344
Q ss_pred HHHHHHHHHhcCChHHHHHHH
Q 011714 158 FTILVNSLCKSGRLKEALEVL 178 (479)
Q Consensus 158 ~~~li~~~~~~g~~~~a~~~~ 178 (479)
+..+..++...|+.+.|.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHH
Confidence 444555555555544444333
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.79 E-value=0.00019 Score=49.95 Aligned_cols=83 Identities=16% Similarity=0.074 Sum_probs=65.6
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011714 370 PGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITK 449 (479)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (479)
...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|+..+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4567778888899999999999999988763 2356778888889999999999999999988875 4466777777777
Q ss_pred HhccC
Q 011714 450 LDQLE 454 (479)
Q Consensus 450 ~~~~g 454 (479)
+.+.|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 66543
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.79 E-value=0.00021 Score=52.46 Aligned_cols=80 Identities=16% Similarity=0.091 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011714 353 DAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMY 432 (479)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 432 (479)
.+...|+......+. +...+..+..++...|++++|+..++++++... .+...|..+..++...|++++|+..|++..
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467788888776654 678888999999999999999999999987642 356778888899999999999999999888
Q ss_pred hC
Q 011714 433 EH 434 (479)
Q Consensus 433 ~~ 434 (479)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.76 E-value=0.00021 Score=67.22 Aligned_cols=60 Identities=5% Similarity=-0.128 Sum_probs=26.3
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhC-----CC-CCC-HhHHHHHHHHHHhcCChHHHHHHHHHH
Q 011714 262 TFNTLFNGYCKEGTPMKGVGLLKLMKKR-----NC-LPD-KISYSTLLNGLLKWGKIRPAVSIFKEM 321 (479)
Q Consensus 262 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (479)
+++.|...|...|++++|..++++..+. |. .|+ ..+++.|...|...|++++|..++++.
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444444445544444444443221 11 111 233444555555555555555554443
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.75 E-value=0.00011 Score=68.96 Aligned_cols=122 Identities=9% Similarity=-0.001 Sum_probs=69.6
Q ss_pred hcCCHHHHHHHHHHHHHC---CCC---C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----CC-CCC-HhhHHHHH
Q 011714 202 YVGRVEEAYEMLMNVKND---GLK---P-DVYTYTAVMDGFCKVGRSNEAMELLNEAIER-----GV-TPN-VVTFNTLF 267 (479)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~---~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~ 267 (479)
..|++++|+.++++.++. -+. | ...+++.|...|...|++++|+.++++.++. |. .|+ ..+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 556666666666655432 111 1 2445666666677777777776666665432 21 122 34566667
Q ss_pred HHHHhcCChhhHHHHHHHHHh-----CCCC-CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 268 NGYCKEGTPMKGVGLLKLMKK-----RNCL-PD-KISYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
..|...|++++|..++++..+ .|.. |+ ..+...+..++...+.+++|..+|..+.+
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776666543 2321 22 23345555666667777777777777664
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.75 E-value=0.00035 Score=48.48 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS 164 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (479)
...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3445555555666666666666666655443 3344555555555555566666655555555432 2234444444444
Q ss_pred HH
Q 011714 165 LC 166 (479)
Q Consensus 165 ~~ 166 (479)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.71 E-value=0.00035 Score=51.23 Aligned_cols=77 Identities=12% Similarity=0.102 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011714 69 RIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMF 147 (479)
Q Consensus 69 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (479)
|+..|+...+.++. +...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...|+...
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444443322 44555555555555555555555555554432 2334445555555555555555555555444
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.64 E-value=0.00026 Score=50.46 Aligned_cols=82 Identities=16% Similarity=0.009 Sum_probs=61.5
Q ss_pred ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCCHhhHHHHH
Q 011714 369 DPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAK-IPSRTSYDMLI 447 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~ 447 (479)
+...+..+..++...|++++|++.|+++++.... +...|..+..+|...|++++|+..+++.++... .++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 5677888999999999999999999999886432 566788899999999999999999998876421 22344444444
Q ss_pred HHHh
Q 011714 448 TKLD 451 (479)
Q Consensus 448 ~~~~ 451 (479)
..+.
T Consensus 85 ~~l~ 88 (100)
T 3ma5_A 85 DAKL 88 (100)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.58 E-value=0.00024 Score=54.76 Aligned_cols=84 Identities=8% Similarity=-0.112 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh----------hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011714 99 NEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDF----------FEARKVIDCMFDNGYHPNVTTFTILVNSLCKS 168 (479)
Q Consensus 99 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (479)
+.+++|++.++...+.. +.+...|..+..++...+++ ++|+..|++.++.. +.+..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 34445555555544443 33444454444444444433 35555555555442 22344555555555444
Q ss_pred -----------CChHHHHHHHHHHhhC
Q 011714 169 -----------GRLKEALEVLDQMGRI 184 (479)
Q Consensus 169 -----------g~~~~a~~~~~~~~~~ 184 (479)
|++++|++.|++..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh
Confidence 3556666666655554
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.52 E-value=0.00035 Score=49.83 Aligned_cols=63 Identities=19% Similarity=0.184 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 405 TITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 405 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
...+..+..++...|++++|+..|+++++.. +.+...|..+..+|...|++++|.+.|+++++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3344444455555555555555555555443 22344445555555555555555555554443
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.34 E-value=0.00058 Score=63.08 Aligned_cols=86 Identities=12% Similarity=-0.126 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHHc---CCC---Cc-hHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-----CC-CCCH-hhHHHHHH
Q 011714 383 GKKTDEALIHLHHAIEM---GHI---PR-TITFNNVIQALCGEGKIDKALLLLFLMYEH-----AK-IPSR-TSYDMLIT 448 (479)
Q Consensus 383 ~g~~~~A~~~~~~~~~~---~~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~ 448 (479)
.|++++|+.++++.++. -+. |+ ..+++.+..+|...|++++|+.+++++++. |. .|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45667777666665542 111 11 245666777777777777777777666531 21 2222 34666777
Q ss_pred HHhccCCHhHHHHHHHHHHh
Q 011714 449 KLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 449 ~~~~~g~~~~A~~~~~~~~~ 468 (479)
.|..+|++++|..+++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77777777777777777655
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.27 E-value=0.0092 Score=52.96 Aligned_cols=134 Identities=13% Similarity=0.039 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHh--cC---CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc---C--ChhhH---HHHHHHHHh
Q 011714 82 NWSVSDFNDLLMALVM--LN---EQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNK---N--DFFEA---RKVIDCMFD 148 (479)
Q Consensus 82 ~~~~~~~~~ll~~~~~--~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~--~~~~a---~~~~~~~~~ 148 (479)
+.+...|...+++... .+ +..+|+.+|++..+.. |-....|..+..+|... + .-... ...++....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 4467777777765543 22 3467888888887663 33345555444444310 0 00000 001111000
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011714 149 -NGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKN 218 (479)
Q Consensus 149 -~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (479)
...+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0113344444444444444455555555555555442 4444444444445555555555555554444
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.27 E-value=0.0027 Score=56.35 Aligned_cols=147 Identities=10% Similarity=0.025 Sum_probs=75.1
Q ss_pred CCCHhHHHHHHHHHH--hcCC---hHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHhccc-ch--hhccHHHHHHHHHHHH
Q 011714 292 LPDKISYSTLLNGLL--KWGK---IRPAVSIFKEMVRFGFEVDE-RMMNSLLRGLCMKS-WE--EKDLLEDAYQVFEKMT 362 (479)
Q Consensus 292 ~~~~~~~~~l~~~~~--~~~~---~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~-~~--~~~~~~~a~~~~~~~~ 362 (479)
+.+...|...+++.. ..++ ..+|..+|++.++. .|+- ..+..+..++.... .. ...........++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 445666666665543 2232 45677777777775 4442 33333333332110 00 0011111111222211
Q ss_pred h-CCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHh
Q 011714 363 K-KVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRT 441 (479)
Q Consensus 363 ~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 441 (479)
. .....++..|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.+++....+ |...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcC
Confidence 1 1112245566666655655677777777777777653 565566666666667777777777777766653 4444
Q ss_pred hHH
Q 011714 442 SYD 444 (479)
Q Consensus 442 ~~~ 444 (479)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.14 E-value=0.00068 Score=48.01 Aligned_cols=83 Identities=17% Similarity=0.059 Sum_probs=54.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 011714 376 VIRTLGKGKKTDEALIHLHHAIEMGHIPRTI-TFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLE 454 (479)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (479)
....+...|++++|++.++++.+... .+.. .+..+..++...|++++|+..|++..+.. +.+...+.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------H
Confidence 45566777888888888888877532 2455 77777788888888888888888888765 223333311 4
Q ss_pred CHhHHHHHHHHHHh
Q 011714 455 KSYDACALYGAALK 468 (479)
Q Consensus 455 ~~~~A~~~~~~~~~ 468 (479)
.+.++...|++..+
T Consensus 76 ~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 76 MVMDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHHHCCTTH
T ss_pred HHHHHHHHHHHHhc
Confidence 44555555554443
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.13 E-value=0.0013 Score=60.72 Aligned_cols=61 Identities=15% Similarity=0.009 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC-----CC-CCCH-hhHHHHHHHHhccCCHhHHHHHHHHHH
Q 011714 407 TFNNVIQALCGEGKIDKALLLLFLMYEH-----AK-IPSR-TSYDMLITKLDQLEKSYDACALYGAAL 467 (479)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (479)
+++.+..+|...|++++|+.+++++++. |. .|+. .+++.|...|..+|++++|..++++++
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4444555555555555555555544421 10 1111 234445555555555555555555544
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.00 E-value=0.0061 Score=42.44 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=45.5
Q ss_pred ChhhHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 369 DPGTYGIVIRTLGKGKK---TDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
++..+..+..++...++ .++|..++++++..... +......+...+.+.|++++|+..|+++.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 55666667766654443 67888888887775322 45666667777777888888888888877764
No 215
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.82 E-value=0.19 Score=42.76 Aligned_cols=85 Identities=18% Similarity=0.169 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCH
Q 011714 171 LKEALEVLDQMGRIGCKPN---IQTYNCLLKGLCYV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV-GRS 241 (479)
Q Consensus 171 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~ 241 (479)
...|...+++..+. .|+ ...|..+...|... |+.++|.++|++.++.+..-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45666666666665 344 45677777777763 77777777777777654322355666666666663 777
Q ss_pred HHHHHHHHHHHHCCCC
Q 011714 242 NEAMELLNEAIERGVT 257 (479)
Q Consensus 242 ~~a~~~~~~~~~~~~~ 257 (479)
+++.+.+++.+.....
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777776444
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.68 E-value=0.0042 Score=57.37 Aligned_cols=84 Identities=7% Similarity=-0.060 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHC-----CC-CCC-HhhHHHHHHHHHhcCChhhHHHHHHHHHhC-----CC-CCC-HhHHHHHHHH
Q 011714 239 GRSNEAMELLNEAIER-----GV-TPN-VVTFNTLFNGYCKEGTPMKGVGLLKLMKKR-----NC-LPD-KISYSTLLNG 304 (479)
Q Consensus 239 ~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~ 304 (479)
|++++|+.++++.++. |. .|+ ..+++.|..+|...|++++|+.++++..+. |. .|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555554431 11 111 234555666666666666666666555321 21 122 2446666666
Q ss_pred HHhcCChHHHHHHHHHHH
Q 011714 305 LLKWGKIRPAVSIFKEMV 322 (479)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~ 322 (479)
|...|++++|..++++.+
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 666666666666666554
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.65 E-value=0.0091 Score=45.41 Aligned_cols=87 Identities=13% Similarity=0.006 Sum_probs=68.6
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCCC--chHHHHHHHHHHHcCCCH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGK---KTDEALIHLHHAIEMGHIP--RTITFNNVIQALCGEGKI 421 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~ 421 (479)
..+.+..+.+-|.+....+. ++..+.-.+..++++.+ +.++++.+++...+.. .| +...+-.+.-+|.+.|++
T Consensus 10 ~~~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 10 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp CHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCH
T ss_pred CHHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCH
Confidence 44677888888888777655 47788888888999988 6679999999988864 24 345556666788999999
Q ss_pred HHHHHHHHHHHhCC
Q 011714 422 DKALLLLFLMYEHA 435 (479)
Q Consensus 422 ~~a~~~~~~~~~~~ 435 (479)
++|+++++.+.+..
T Consensus 88 ~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 88 EKALKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999874
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.63 E-value=0.054 Score=54.91 Aligned_cols=129 Identities=18% Similarity=0.129 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 011714 124 SIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYV 203 (479)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 203 (479)
..++..+.+.|..++|.++.++-. .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 555555556666666555442110 0122334556666666664332 2455666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHH
Q 011714 204 GRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLL 283 (479)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 283 (479)
++++.|.+.|..+.. |..+...+...|+.+...++.+.....|. ++....+|.+.|++++|++++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 666666666665532 22333344445555554444444433321 223333444455555555554
Q ss_pred HH
Q 011714 284 KL 285 (479)
Q Consensus 284 ~~ 285 (479)
.+
T Consensus 760 ~~ 761 (814)
T 3mkq_A 760 IK 761 (814)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.61 E-value=0.01 Score=54.78 Aligned_cols=89 Identities=7% Similarity=0.011 Sum_probs=52.4
Q ss_pred HHHccCCHHHHHHHHHHHHHCC---CCC----CHhhHHHHHHHHHhcCChhhHHHHHHHHHhC-----C-CCCC-HhHHH
Q 011714 234 GFCKVGRSNEAMELLNEAIERG---VTP----NVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR-----N-CLPD-KISYS 299 (479)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~-~~~~~ 299 (479)
.+...|++++|+.++++.++.. ..| ...+++.+...|...|++++|+.++++.... | ..|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445566677777766665431 111 2345666666777777777777766665431 2 1122 34566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 011714 300 TLLNGLLKWGKIRPAVSIFKEMV 322 (479)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~ 322 (479)
.|...|...|++++|..++++.+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 67777777777777777776654
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.53 E-value=0.053 Score=54.95 Aligned_cols=156 Identities=12% Similarity=0.139 Sum_probs=101.4
Q ss_pred HHHHHHhcCChhhHHH-HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 011714 56 RFVDRIKASPLKERID-IFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKN 134 (479)
Q Consensus 56 ~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (479)
.+-..+..++.++|.. ++..+. +......++..+.+.|..+.|+++.+. . ..-.......|
T Consensus 605 ~~~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~ 666 (814)
T 3mkq_A 605 EFQTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVG 666 (814)
T ss_dssp HHHHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHT
T ss_pred HHhHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcC
Confidence 3444556777877766 442211 133347888888999999999876632 1 11134456789
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011714 135 DFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLM 214 (479)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 214 (479)
++++|.++.+.+ .+...|..|...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++.+
T Consensus 667 ~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 667 QLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp CHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHH
Confidence 999999986543 4789999999999999999999999998763 3345555556777766665555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 011714 215 NVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNE 250 (479)
Q Consensus 215 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 250 (479)
.....|. ++....+|.+.|++++|.+++.+
T Consensus 732 ~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 732 DAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 5544431 22333344455555555555543
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.49 E-value=0.026 Score=39.44 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=39.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 011714 91 LLMALVMLNEQETAVKFFSEASSYGLAPNSW-TFSIMIRCYCNKNDFFEARKVIDCMFDNG 150 (479)
Q Consensus 91 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (479)
....+...|++++|+..|+++.+.. +.+.. .+..+..++...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3445666777777777777776653 34455 67777777777777777777777776653
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.47 E-value=0.16 Score=37.30 Aligned_cols=140 Identities=20% Similarity=0.119 Sum_probs=73.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC
Q 011714 305 LLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGK 384 (479)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 384 (479)
..-.|..++..++..+.... .+..-++-++.... ..-+-+...++++.+... + |. ...|
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNii-----D~a~C~y~v~vLd~IGki-F--Di----------s~C~ 75 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLL-----ESIDCRYMFQVLDKIGSY-F--DL----------DKCQ 75 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHH-----HHCCHHHHHHHHHHHGGG-S--CG----------GGCS
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecc-----hhhchhHHHHHHHHHhhh-c--Cc----------Hhhh
Confidence 34457777777777776653 23344454444443 334444445555544432 1 11 1223
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHH
Q 011714 385 KTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYG 464 (479)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 464 (479)
+.......+-.+ .-+.......+......|+.++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.
T Consensus 76 NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 76 NLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp CTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 333333332221 123344555556666667766666666665443 25566666667777777777777777777
Q ss_pred HHHhCCC
Q 011714 465 AALKQGV 471 (479)
Q Consensus 465 ~~~~~~~ 471 (479)
++-++|+
T Consensus 150 ~AC~kG~ 156 (172)
T 1wy6_A 150 EACKKGE 156 (172)
T ss_dssp HHHHTTC
T ss_pred HHHHhhh
Confidence 7766664
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.34 E-value=0.071 Score=45.36 Aligned_cols=96 Identities=11% Similarity=0.041 Sum_probs=71.7
Q ss_pred hhccHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhc-----CCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHc-CC
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVT-DPGTYGIVIRTLGK-----GKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCG-EG 419 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g 419 (479)
..+....|...+++..+.++.- +...|..++..|.. .|+.++|.++|+++++.+..-+..++......++. .|
T Consensus 175 Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 175 LPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 3455677888888887765431 24578888888888 49999999999999986432246777777888877 49
Q ss_pred CHHHHHHHHHHHHhCCCC--CCHhh
Q 011714 420 KIDKALLLLFLMYEHAKI--PSRTS 442 (479)
Q Consensus 420 ~~~~a~~~~~~~~~~~~~--~~~~~ 442 (479)
+.+++.+++++.+..... |+...
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~l 279 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKL 279 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhH
Confidence 999999999999987654 55433
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.28 E-value=0.051 Score=37.64 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011714 172 KEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKN 218 (479)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (479)
++|..++++..+.. +-+..+...+...+.+.|++++|+..|+.+.+
T Consensus 26 ~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 26 DEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444444332 22333334444444444444444444444443
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.22 E-value=0.025 Score=43.04 Aligned_cols=65 Identities=11% Similarity=0.092 Sum_probs=26.7
Q ss_pred CCHHhHHHHHHHHHhcC---ChhhHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 011714 118 PNSWTFSIMIRCYCNKN---DFFEARKVIDCMFDNGYHP--NVTTFTILVNSLCKSGRLKEALEVLDQMGR 183 (479)
Q Consensus 118 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 183 (479)
++..+...+..++++.+ +++++..+++++.+.+ .| +...+-.|.-++.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444444444444444 3334444444444332 11 122333333344444444444444444444
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.14 E-value=0.061 Score=38.21 Aligned_cols=67 Identities=7% Similarity=-0.029 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYG------LAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDN 149 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (479)
.++..+..|...+.+.|++..|...|+.+.+.- -.+....+..+..++.+.|+++.|...+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 456667777778888888888888887765421 1233556666666666777777777766666654
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.14 E-value=0.056 Score=38.39 Aligned_cols=67 Identities=16% Similarity=0.124 Sum_probs=53.5
Q ss_pred ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC------CCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 369 DPGTYGIVIRTLGKGKKTDEALIHLHHAIEMG------HIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
+..-+-.++..+...|+++.|...++.+.+.. -.+...++..+..++.+.|+++.|+.+++++.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 34456678888999999999999999887541 12356778889999999999999999999998764
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.28 Score=38.31 Aligned_cols=106 Identities=12% Similarity=0.127 Sum_probs=67.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 011714 55 QRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKN 134 (479)
Q Consensus 55 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (479)
.+|--.+..|+++.|.++.+.+ -+...|..|.......|+++-|.+.|.+.. -+..+.-.|.-.|
T Consensus 10 ~rF~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---------D~~~L~~Ly~~tg 74 (177)
T 3mkq_B 10 IRFDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH---------SFDKLSFLYLVTG 74 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT---------CHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC---------CHHHHHHHHHHhC
Confidence 3455566778888887777665 256778888888888888888888777654 2444555555667
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011714 135 DFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQM 181 (479)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 181 (479)
+.+...++-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 75 ~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 75 DVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp CHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 7666665555544443 1233334444567777777777543
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.41 Score=37.39 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHH
Q 011714 155 VTTFTILVNSLCKSGRLKEALEVLDQ 180 (479)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~a~~~~~~ 180 (479)
...|..|.......|+++-|.+.|.+
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34444444444444444444444444
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.77 E-value=0.058 Score=40.48 Aligned_cols=103 Identities=15% Similarity=0.084 Sum_probs=54.8
Q ss_pred ChhhHHHHHHHHhcCCCH------HHHHHHHHHHHHcCCCCchH-HHHHHHH------HHHcCCCHHHHHHHHHHHHhCC
Q 011714 369 DPGTYGIVIRTLGKGKKT------DEALIHLHHAIEMGHIPRTI-TFNNVIQ------ALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
|..+|-..+...-+.|+. ++..++|+++... ++|+.. .|...+. .+...++.++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 334444444444444555 5556666666553 344321 1111110 1123367777777777776543
Q ss_pred CCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCC
Q 011714 436 KIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIP 473 (479)
Q Consensus 436 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 473 (479)
-.- ...|-....--.++|+...|.+++.+++..+..|
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 222 5555555555666777777777777777655433
No 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.48 E-value=0.00014 Score=65.91 Aligned_cols=192 Identities=16% Similarity=0.143 Sum_probs=112.6
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 011714 61 IKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEAR 140 (479)
Q Consensus 61 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (479)
+..+.+.+|++.|-. .-|+..|..++.++.+.|.+++-++.+....+. ..++..=+.|+.+|++.+++.+..
T Consensus 65 L~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elE 136 (624)
T 3lvg_A 65 LQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELE 136 (624)
T ss_dssp TTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTT
T ss_pred HccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHH
Confidence 455667777665422 236667888999999999999888888766654 334445568888999988877654
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--------------------CCCCCHHHHHHHHHHH
Q 011714 141 KVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRI--------------------GCKPNIQTYNCLLKGL 200 (479)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~ 200 (479)
+++. .||..-...+.+-|...|.++.|.-+|..+..- .-..++.||..+-.+|
T Consensus 137 efl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~AC 209 (624)
T 3lvg_A 137 EFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC 209 (624)
T ss_dssp STTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHH
T ss_pred HHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Confidence 4332 356555666677777777777776666544210 0023556777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 011714 201 CYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKE 273 (479)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (479)
...+.+.-|.-.--.+.- .+| -...++..|-..|-+++.+.+++..... .......|+.|.-.|++-
T Consensus 210 vd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 210 VDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS
T ss_pred hCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc
Confidence 777776655444333321 111 1123344555556666666555555432 122444555555554443
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.32 E-value=0.11 Score=38.01 Aligned_cols=87 Identities=13% Similarity=0.017 Sum_probs=54.8
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHH---HHHHHHHHHHcCCCC--chHHHHHHHHHHHcCCCH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDE---ALIHLHHAIEMGHIP--RTITFNNVIQALCGEGKI 421 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~ 421 (479)
....+..+.+-|......+. ++..+--.+..++.+...... ++.+++.+...+ .| .....-.+.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 34555666666665555444 455666666777777776655 777777776643 12 223334455577788888
Q ss_pred HHHHHHHHHHHhCC
Q 011714 422 DKALLLLFLMYEHA 435 (479)
Q Consensus 422 ~~a~~~~~~~~~~~ 435 (479)
++|+++++.+.+..
T Consensus 91 ~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 91 EKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888887764
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.28 E-value=0.59 Score=34.36 Aligned_cols=67 Identities=21% Similarity=0.247 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 011714 190 IQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVT 257 (479)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 257 (479)
...+...+..+...|+-++..+++..+... .+|++.....+..+|.+.|+..+|.+++.++-+.|++
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 344555666666777777777777665432 3556666666777777777777777777777766654
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.22 E-value=0.5 Score=35.51 Aligned_cols=100 Identities=16% Similarity=0.146 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCHH-hHHHHHHHH------HhcCChhhHHHHHHHHHhCC
Q 011714 84 SVSDFNDLLMALVMLNEQ------ETAVKFFSEASSYGLAPNSW-TFSIMIRCY------CNKNDFFEARKVIDCMFDNG 150 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~------~~~~~~~~a~~~~~~~~~~~ 150 (479)
|.++|-..+..+-+.|+. +..+++|++.... ++|+.. .|...+..+ ...++.++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 566666666666666766 6667777776653 345421 111111111 22356666666666665442
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 011714 151 YHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIG 185 (479)
Q Consensus 151 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 185 (479)
+-=..+|......-.++|++..|.+++.+....+
T Consensus 91 -KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 91 -KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp -TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 2225555555555566666666666666666655
No 235
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.65 E-value=3.4 Score=39.91 Aligned_cols=119 Identities=8% Similarity=0.004 Sum_probs=61.6
Q ss_pred ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHH
Q 011714 310 KIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEA 389 (479)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 389 (479)
+.+.|...+....+.. ..+......+-..++... ...+...++...+....... .+.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRL-MGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTS-CSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHH-HHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 6677777777765433 223333333333333221 12232334445555443322 2333334444444566888888
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011714 390 LIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYE 433 (479)
Q Consensus 390 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (479)
...|+.|..... ......--+..++...|+.++|..+|+.+..
T Consensus 305 ~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 887776644211 1233334445566777888888888877764
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.54 E-value=0.19 Score=36.70 Aligned_cols=66 Identities=9% Similarity=0.026 Sum_probs=26.4
Q ss_pred CCHHhHHHHHHHHHhcCChhh---HHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 011714 118 PNSWTFSIMIRCYCNKNDFFE---ARKVIDCMFDNGYH-PNVTTFTILVNSLCKSGRLKEALEVLDQMGR 183 (479)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 183 (479)
++..+-..+..++++..+... ++.+++++.+.+.+ ......-.|.-++.+.|++++|.+.++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444444444443333 44444444433200 1122222333344444444444444444444
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.33 E-value=3.2 Score=38.33 Aligned_cols=190 Identities=14% Similarity=0.066 Sum_probs=117.9
Q ss_pred hcCChhhHHHHHHHHHh-----cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHhHHHHHHHHH----
Q 011714 62 KASPLKERIDIFDSIKK-----DGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASS-YGLAPNSWTFSIMIRCYC---- 131 (479)
Q Consensus 62 ~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~---- 131 (479)
..++++.|++.+-.+.+ .+...+......++..|...|+++...+.+..+.+ +|..+ .....++..+.
T Consensus 28 ~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~ 105 (445)
T 4b4t_P 28 AQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLK 105 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHh
Confidence 44567778777655542 33455778889999999999999998887776654 34222 22334443332
Q ss_pred hcCChhh--HHHHHHHHHh--CC-CCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCC---HHHHHHHHH
Q 011714 132 NKNDFFE--ARKVIDCMFD--NG-YHP---NVTTFTILVNSLCKSGRLKEALEVLDQMGRI--GCKPN---IQTYNCLLK 198 (479)
Q Consensus 132 ~~~~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~ 198 (479)
.....+. -..+.+.+.. .| +-. .......|...+...|++.+|.+++..+... |.... ...+...++
T Consensus 106 ~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 106 SSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp HHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 2332222 1122221111 11 111 1233456788888999999999999988642 21111 346777788
Q ss_pred HHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 011714 199 GLCYVGRVEEAYEMLMNVKN----DGLKPD--VYTYTAVMDGFCKVGRSNEAMELLNEAIE 253 (479)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 253 (479)
.|...+++..|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.++.+
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 89999999999998888642 222232 23456667777888899888888877754
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.83 E-value=2.7 Score=38.81 Aligned_cols=94 Identities=14% Similarity=0.070 Sum_probs=45.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc--CCCCc---hHHHHHHHHHHHcCCCHHHHHHHHHHHHh----CCCCCCH--hh
Q 011714 374 GIVIRTLGKGKKTDEALIHLHHAIEM--GHIPR---TITFNNVIQALCGEGKIDKALLLLFLMYE----HAKIPSR--TS 442 (479)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~--~~ 442 (479)
..+...+...|++.+|.+++..+... +.... ...+...++.|...+++..|..++.++.. ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34455555666666666666655422 11111 12344445556666666666666655432 1111111 23
Q ss_pred HHHHHHHHhccCCHhHHHHHHHHHH
Q 011714 443 YDMLITKLDQLEKSYDACALYGAAL 467 (479)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (479)
+...+..+...+++.+|...|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444455555566666555555443
No 239
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.67 E-value=0.89 Score=31.31 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011714 385 KTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLIT 448 (479)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (479)
+.-+..+-+..+....+.|++.+..+.+.+|.+.+++..|.++++-...+. .+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 444556666666666777888888888888888888888888888776653 233445666554
No 240
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.95 E-value=8.7 Score=38.89 Aligned_cols=255 Identities=10% Similarity=0.061 Sum_probs=115.7
Q ss_pred HHhcCChhhHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C-----CCHHhHHHHHHHH
Q 011714 60 RIKASPLKERIDIFDSIKKDG--TNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGL--A-----PNSWTFSIMIRCY 130 (479)
Q Consensus 60 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--~-----~~~~~~~~l~~~~ 130 (479)
.+..+..++++.+++.....+ ..+....=..+.-++...|..+++..++.......- . +....-..+.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 345566666666665443311 111222223333444555555566666655443210 0 1111122232333
Q ss_pred HhcCC-hhhHHHHHHHHHhCCCCCCHHH--HH--HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHhc
Q 011714 131 CNKND-FFEARKVIDCMFDNGYHPNVTT--FT--ILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYN--CLLKGLCYV 203 (479)
Q Consensus 131 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~--~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~ 203 (479)
+-.|. -+++.+.+..+.... +... .. +|...+.-.|+.+....++..+.+.. +..+.. .+.-++...
T Consensus 464 a~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 33332 234445555544321 2111 11 23333445566666666666555431 222222 333334466
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHH
Q 011714 204 GRVEEAYEMLMNVKNDGLKPDVYTY--TAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVG 281 (479)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 281 (479)
|+.+.+..+++.+.... .|....- .++.-+|+..|+.....+++..+.+.. ..++.-...+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 77777777777766531 2222111 123335566777766666777766542 2233322333334444566666666
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 011714 282 LLKLMKKRNCLPDKISYSTLLNGLLKWGKI-RPAVSIFKEMVR 323 (479)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 323 (479)
+++.+...+ .|....-..+.-+....|.. .++..++..+..
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 666555543 23333333333334444443 456667766653
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.89 E-value=1.2 Score=32.62 Aligned_cols=70 Identities=11% Similarity=-0.020 Sum_probs=42.5
Q ss_pred CCCChhhHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 366 SVTDPGTYGIVIRTLGKGKKT---DEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
..|+..+--.+..++.+.... .+++.+++.+.+.+..-....+-.+.-++.+.|++++|+++.+.+.+..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 344555544555566665543 4577777777765421123444555567777888888888888777653
No 242
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.39 E-value=2.6 Score=31.39 Aligned_cols=69 Identities=12% Similarity=-0.022 Sum_probs=47.8
Q ss_pred CCChhhHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 367 VTDPGTYGIVIRTLGKGKKT---DEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
.|+..+--.+..++.+.... .+++.+++.+...+..-.....-.+.-++.+.|++++|+++.+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 45666655666777776654 5678888888775432233444555668889999999999999888874
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.31 E-value=1.1 Score=44.30 Aligned_cols=26 Identities=8% Similarity=0.013 Sum_probs=14.6
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHHc
Q 011714 299 STLLNGLLKWGK-IRPAVSIFKEMVRF 324 (479)
Q Consensus 299 ~~l~~~~~~~~~-~~~a~~~~~~~~~~ 324 (479)
..++..+...++ .+.|..+++++...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~ 278 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK 278 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh
Confidence 444444445555 35566666666665
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.17 E-value=0.81 Score=45.11 Aligned_cols=61 Identities=10% Similarity=0.064 Sum_probs=42.1
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCC---------CHHHHHHHHHHHH
Q 011714 370 PGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEG---------KIDKALLLLFLMY 432 (479)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------~~~~a~~~~~~~~ 432 (479)
..=|..++....+.+.+++|.+.|+..+.. +-++..+..|+..|.+.+ +.+..+.+.-++.
T Consensus 613 ~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~ 682 (754)
T 4gns_B 613 GLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKI 682 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHH
Confidence 344777777777788888888888877753 456777788888887765 5565555554443
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.67 E-value=0.94 Score=41.08 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----CCCCCCHhhH
Q 011714 193 YNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIE-----RGVTPNVVTF 263 (479)
Q Consensus 193 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 263 (479)
...++..+...|+++++...+..+.... +.+...+..++.++.+.|+..+|++.|+...+ .|+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3445666667777777777776666543 33666777777777777777777777766533 3677766543
No 246
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.64 E-value=2.1 Score=31.37 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011714 385 KTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITK 449 (479)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (479)
+.-+..+-+..+...++.|++.+..+.+.+|.+.+|+..|.++|+-...+. .+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 344556666777777888999999999999999999999999999887664 3445567776653
No 247
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.53 E-value=0.0002 Score=64.90 Aligned_cols=166 Identities=16% Similarity=0.112 Sum_probs=97.0
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKG 199 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (479)
+..|..|..+..+.+++.+|++-|- +. -|+..|..++....+.|.+++-+.++...++..- ++..=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 4467777777777777777665442 21 2666777777777777888877777766655432 33334567777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhH
Q 011714 200 LCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKG 279 (479)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 279 (479)
|++.++..+..+++ -.|+..-...+.+-|...|.++.|.-+|..+ .-|..|...+.+.|++..|
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~i---------sN~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS---------CCCTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhC---------ccHHHHHHHHHHHHHHHHH
Confidence 77777766544433 1345555566677777777777776666433 1233344444455555554
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHH
Q 011714 280 VGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAV 315 (479)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 315 (479)
++.- .+ ..+..||..+-.+|...+++..|.
T Consensus 190 VdaA---rK---Ans~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 190 VDGA---RK---ANSTRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp TTTT---TT---CCSSCSHHHHTHHHHHSCTTTTTT
T ss_pred HHHH---Hh---cCChhHHHHHHHHHhCchHHHHHH
Confidence 4321 11 124556666666666665555444
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.52 E-value=6.3 Score=41.55 Aligned_cols=83 Identities=17% Similarity=0.121 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHH
Q 011714 226 YTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPN----VVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTL 301 (479)
Q Consensus 226 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 301 (479)
.-|..++..+-+.+.++.+.++-..+++.....+ ...|..+...+...|++++|...+-.+.....+ ......+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHH
Confidence 3455666666677777777766665554321111 124666677777777777777777666554332 4445555
Q ss_pred HHHHHhcCC
Q 011714 302 LNGLLKWGK 310 (479)
Q Consensus 302 ~~~~~~~~~ 310 (479)
+..++..|.
T Consensus 978 V~~lce~~~ 986 (1139)
T 4fhn_B 978 VNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHhCCC
Confidence 555554444
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.29 E-value=1.6 Score=39.56 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=58.8
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCCCCHHHHHHH
Q 011714 122 TFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGR-----IGCKPNIQTYNCL 196 (479)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 196 (479)
+...++..+...|+..++...+..+.... +.+...|..+|.++.+.|+..+|++.|+++.+ .|+.|+..+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 45566777888899999998888887664 56888999999999999999999999988653 5888888764433
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.02 E-value=1.5 Score=30.18 Aligned_cols=63 Identities=14% Similarity=0.072 Sum_probs=48.1
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 011714 350 LLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQ 413 (479)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 413 (479)
+.-+.++-++.+...+..|++....+.+++|.+.+++.-|.++++-+... ..+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 55567777777778888889999999999999999999999999887754 3334456776664
No 251
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=89.98 E-value=2.1 Score=34.07 Aligned_cols=53 Identities=17% Similarity=0.061 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHcCCCC-chHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 011714 386 TDEALIHLHHAIEMGHIP-RTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIP 438 (479)
Q Consensus 386 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 438 (479)
..++.++|..|...|+-- -+..|......+...|++.+|..+|+..++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555555555544332 23345555555555666666666666555554333
No 252
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.00 E-value=21 Score=36.19 Aligned_cols=154 Identities=11% Similarity=-0.014 Sum_probs=71.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHhc
Q 011714 305 LLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPG--TYGIVIRTLGK 382 (479)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 382 (479)
+...|+.+....++..+.+. .+..+...+..++... -.|+.+.+..+.+.+... ..|... .-.++..+|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll---~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaG 572 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALI---NYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAG 572 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHH---TTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTT
T ss_pred hcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhh---hCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcC
Confidence 34556666666666665543 2333333333333221 224445555555555542 111111 11234456667
Q ss_pred CCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCH-hHHHH
Q 011714 383 GKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKS-YDACA 461 (479)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~ 461 (479)
.|+.....++++.+.+.. ..+......+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .+|+.
T Consensus 573 TGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid 650 (963)
T 4ady_A 573 TGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAID 650 (963)
T ss_dssp SCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHH
Confidence 777766666777776541 2222222222234444566666666665555443 23332222233333333332 45566
Q ss_pred HHHHHH
Q 011714 462 LYGAAL 467 (479)
Q Consensus 462 ~~~~~~ 467 (479)
.+..+.
T Consensus 651 ~L~~L~ 656 (963)
T 4ady_A 651 VLDPLT 656 (963)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 666554
No 253
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.50 E-value=14 Score=33.33 Aligned_cols=30 Identities=3% Similarity=-0.064 Sum_probs=19.2
Q ss_pred HhhHHHHHHHHhccCCHhHHHHHHHHHHhCCC
Q 011714 440 RTSYDMLITKLDQLEKSYDACALYGAALKQGV 471 (479)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 471 (479)
..++..+...+.- ..+++...+-+|+..|.
T Consensus 316 rIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 316 RVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp EEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred eeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 3445555554433 57788888888887764
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.14 E-value=4.4 Score=31.09 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 011714 156 TTFTILVNSLCKSGRLKEALEVLDQMG 182 (479)
Q Consensus 156 ~~~~~li~~~~~~g~~~~a~~~~~~~~ 182 (479)
..--.+..+|.+.+++++|+.+++.+.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 333345556666666666666665543
No 255
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.76 E-value=3.1 Score=30.44 Aligned_cols=63 Identities=14% Similarity=0.072 Sum_probs=48.3
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 011714 350 LLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQ 413 (479)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 413 (479)
+.-+..+-++.+...+..|++......+++|.+.+++.-|.++++-++.. ..+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 44556666777778888899999999999999999999999999887754 3444556776664
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.72 E-value=5.7 Score=30.48 Aligned_cols=26 Identities=19% Similarity=0.098 Sum_probs=20.1
Q ss_pred hhHHHHHHHHhccCCHhHHHHHHHHH
Q 011714 441 TSYDMLITKLDQLEKSYDACALYGAA 466 (479)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (479)
+.-..+..+|.+.|++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 44455777888999999999988754
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.60 E-value=6.3 Score=28.91 Aligned_cols=72 Identities=8% Similarity=-0.097 Sum_probs=44.6
Q ss_pred CCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 011714 326 FEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEM 399 (479)
Q Consensus 326 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 399 (479)
..|+..+--.+..++++. ....+...++.+++.+.+.++.-....+-.+.-++.+.|++++|.++.+.+++.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S--~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKS--TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHS--SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 344554444444444433 244566677777777776543223345556677788888888888888887763
No 258
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.81 E-value=17 Score=32.67 Aligned_cols=133 Identities=12% Similarity=-0.009 Sum_probs=68.9
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhc-CChHHHHHHHHHHhhCCCCCCHHHH-
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDN-GYHP---NVTTFTILVNSLCKS-GRLKEALEVLDQMGRIGCKPNIQTY- 193 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~- 193 (479)
......|...|.+.|+.++..+++...... +..+ .......+++.+... +..+.-.++..+..+.. .-...+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 345566777777778777777777665421 0011 233455666666553 23333333333333210 0011122
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 011714 194 -----NCLLKGLCYVGRVEEAYEMLMNVKNDGLKPD-----VYTYTAVMDGFCKVGRSNEAMELLNEAIE 253 (479)
Q Consensus 194 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 253 (479)
.-++..|...|++.+|.+++..+.+.--..| ...+..-+..|...+++.++...+.....
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 2456667777777777777666655311111 23344455566666777777766666543
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.87 E-value=19 Score=37.92 Aligned_cols=197 Identities=12% Similarity=0.059 Sum_probs=116.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--------------------
Q 011714 195 CLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIER-------------------- 254 (479)
Q Consensus 195 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------------------- 254 (479)
.++..+...+..+-+.++..-.. .+....-.+..++...|++++|.+.|.+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 35555666666666655443322 23333345566777777777777777654210
Q ss_pred --CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 011714 255 --GVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDK----ISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEV 328 (479)
Q Consensus 255 --~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 328 (479)
....-..-|..++..+.+.+.++.++++-....+....-+. ..|..+.+.+...|++++|...+..+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 00112356788899999999999999888777654222121 2578899999999999999999888776543
Q ss_pred CHHHHHHHHHHHhccc-------chhhccHHHHHHHHHHHHh-C-CCCCChhhHHHHHHHHhcCCCHHHH-HHHHHHHHH
Q 011714 329 DERMMNSLLRGLCMKS-------WEEKDLLEDAYQVFEKMTK-K-VSVTDPGTYGIVIRTLGKGKKTDEA-LIHLHHAIE 398 (479)
Q Consensus 329 ~~~~~~~l~~~~~~~~-------~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 398 (479)
....+..++..++..+ +.-.|..++..+++...-+ . .+...+.-|..|-..+...|++..| .-+|+.+.+
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 3455666666555221 0113555666666643222 1 1111223466666666777776554 445565543
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.28 E-value=7.4 Score=35.72 Aligned_cols=59 Identities=8% Similarity=-0.088 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCC--CCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 011714 263 FNTLFNGYCKEGTPMKGVGLLKLMKKRN--CLPDKISYSTLLNGLLKWGKIRPAVSIFKEM 321 (479)
Q Consensus 263 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (479)
...+...|.+.|+++.|.+.+.++...- ...-...+..+++.+...+++..+...+.++
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444455555555555555555544321 1112233444455555555555555555444
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.90 E-value=21 Score=31.14 Aligned_cols=171 Identities=16% Similarity=0.093 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHH----HHHHHHcCCCcCHHHHHHHHH
Q 011714 263 FNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSI----FKEMVRFGFEVDERMMNSLLR 338 (479)
Q Consensus 263 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~ 338 (479)
|.++..-|.+.+++++|++++-.-- ..+.+.|+...|.++ ++-..+.+++++......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4444555666777777776653321 123334444333332 233334555666666555555
Q ss_pred HHhcccchhhcc---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 011714 339 GLCMKSWEEKDL---LEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQAL 415 (479)
Q Consensus 339 ~~~~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 415 (479)
.+.........+ +..|+..=.. ......-|+.....+...|.+.+++.+|...|- .|-.+.+..+..++.-+
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKK-FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHH-HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 554332111111 1112211111 112234467778888999999999999887762 23334446666665554
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 416 CGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
...+...++--+ . ...+--|.-.++...|..+++...+
T Consensus 178 ~~~~~~~e~dlf--------------i-aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDESHTAPLY--------------C-ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCGGGHHHH--------------H-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCccHHHH--------------H-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 443332221111 1 1222245566777777776665554
No 262
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=83.38 E-value=7.5 Score=29.84 Aligned_cols=49 Identities=8% Similarity=-0.128 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCCC-chHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 011714 389 ALIHLHHAIEMGHIP-RTITFNNVIQALCGEGKIDKALLLLFLMYEHAKI 437 (479)
Q Consensus 389 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 437 (479)
+.++|..|...|+-- -+..|......+...|++.+|..+|+..++.+-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 334444444443322 1233444444444555555555555555544433
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.53 E-value=13 Score=33.99 Aligned_cols=98 Identities=15% Similarity=0.016 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHH--H
Q 011714 156 TTFTILVNSLCKSGRLKEALEVLDQMGRI--GCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND---GLKPDVYT--Y 228 (479)
Q Consensus 156 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 228 (479)
.++..+...|.+.|++++|.+.|.++... +..--...+-.+++.+...+++..+...+.+.... +..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35667888888888888888888888753 22334566777888888888888888888776532 22222211 1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH
Q 011714 229 TAVMDGFCKVGRSNEAMELLNEAIE 253 (479)
Q Consensus 229 ~~li~~~~~~~~~~~a~~~~~~~~~ 253 (479)
..-...+...+++..|...|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1112223456778888777766554
No 264
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.36 E-value=13 Score=27.63 Aligned_cols=75 Identities=8% Similarity=-0.088 Sum_probs=50.0
Q ss_pred CcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCch
Q 011714 327 EVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRT 405 (479)
Q Consensus 327 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 405 (479)
.|+..+-..+..++.+. ....+..+++.+++.+...++.-.....-.+.-++.+.|++++|.++.+.+++. .|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S--~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKS--TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHS--SSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CCcHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 45555554455555443 245667788888888777554323345556777888999999999999988884 5543
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.03 E-value=28 Score=30.44 Aligned_cols=31 Identities=16% Similarity=0.052 Sum_probs=21.4
Q ss_pred CCCcchHHHHHHHHHHhcCCh---hhHHHHHHHH
Q 011714 46 KENPRSLQAQRFVDRIKASPL---KERIDIFDSI 76 (479)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~---~~a~~~~~~~ 76 (479)
.++.-.....++-..+..|++ -+|.+.++.+
T Consensus 8 ~~~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi 41 (336)
T 3lpz_A 8 HSNKIERIIARLQRRIAEGQPEEQYEAAQETRLV 41 (336)
T ss_dssp --CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCccccHHHHHHHHH
Confidence 345556777788888889998 7887766554
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.66 E-value=27 Score=30.16 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHhcCChhhHHHHHHHH
Q 011714 50 RSLQAQRFVDRIKASPLKERIDIFDSI 76 (479)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~a~~~~~~~ 76 (479)
......++-..+..|+.-+|.+.++.+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl 39 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTI 39 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 455666777778889888887776554
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.87 E-value=34 Score=29.60 Aligned_cols=118 Identities=17% Similarity=0.076 Sum_probs=62.7
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHH----HHHHHHcCCCcCHHHHHHHH
Q 011714 262 TFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSI----FKEMVRFGFEVDERMMNSLL 337 (479)
Q Consensus 262 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~ 337 (479)
.|.++..-|.+.+++++|++++..-- ..+.+.|+...|.++ .+-..+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34455556666677777776654321 123444554444433 33344456666666666666
Q ss_pred HHHhcccchhhccHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHhcCCCHHHHHHHHH
Q 011714 338 RGLCMKSWEEKDLLEDAYQVFEKMTKKV--SVTDPGTYGIVIRTLGKGKKTDEALIHLH 394 (479)
Q Consensus 338 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 394 (479)
..+.........+..-..+....-.+.+ ..-++.....+...|.+.|++.+|...|-
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 6554321111111111222222222221 23467788888999999999999887663
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.63 E-value=23 Score=28.13 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=34.7
Q ss_pred CChhhHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 011714 134 NDFFEARKVIDCMFDNGYHP-NVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKP 188 (479)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 188 (479)
+...++.++|..|...|+.. -+..|......+...|++.+|.++|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33556777777776665533 34456666666666777777777777766665555
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.24 E-value=8.7 Score=32.23 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=28.8
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 011714 130 YCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 184 (479)
..+.|+++++++....-++.. |-|...-..|+..+|-.|+++.|..-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 334555555555555555443 335555555555555556666655555555443
No 270
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=76.73 E-value=8.7 Score=31.14 Aligned_cols=51 Identities=14% Similarity=0.132 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhCCC-CCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCC
Q 011714 423 KALLLLFLMYEHAK-IPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIP 473 (479)
Q Consensus 423 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 473 (479)
++..+|..|...++ .--...|......+...|++.+|.++|+..++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34444444444443 2223334444444444555555555555554444433
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=76.12 E-value=14 Score=30.92 Aligned_cols=53 Identities=17% Similarity=0.165 Sum_probs=26.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011714 95 LVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFD 148 (479)
Q Consensus 95 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (479)
+.+.|++++|+.....-++.. +.|...-..++..+|-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 334455555555554444433 44444445555555555555555555544443
No 272
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=73.82 E-value=67 Score=31.03 Aligned_cols=79 Identities=10% Similarity=-0.043 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHH
Q 011714 276 PMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAY 355 (479)
Q Consensus 276 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 355 (479)
..++...+....... .+.......+....+.|+++.|...|..|...... .....--+-+++ ...|+.++|.
T Consensus 268 ~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~-----~~~g~~~~a~ 339 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLL-----LERGREAEAK 339 (618)
T ss_dssp CHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHH-----HHTTCHHHHH
T ss_pred ChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHH-----HHcCCHHHHH
Confidence 334444554443322 22222333333444556666666666655432111 111111112222 1446666666
Q ss_pred HHHHHHH
Q 011714 356 QVFEKMT 362 (479)
Q Consensus 356 ~~~~~~~ 362 (479)
.+|..+.
T Consensus 340 ~~~~~~a 346 (618)
T 1qsa_A 340 EILHQLM 346 (618)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666654
No 273
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=73.67 E-value=19 Score=30.12 Aligned_cols=87 Identities=9% Similarity=-0.050 Sum_probs=42.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCchHH--HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHhccCCH
Q 011714 382 KGKKTDEALIHLHHAIEMGHIPRTIT--FNNVIQALCGEGKIDKALLLLFLMYEHAKIPS---RTSYDMLITKLDQLEKS 456 (479)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 456 (479)
..+......++.+.+.+.|..++... -...+...+..|+.+-+..+++. .+..++ ..-.+.+ ....+.|+.
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~l-~~A~~~~~~ 266 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTAL-LLAVELKLK 266 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCHH-HHHHHTTCH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc---cCCCccccCCCCCcHH-HHHHHcCcH
Confidence 34554444556666667766554321 11233344556776655444431 333222 2222222 333445554
Q ss_pred hHHHHHHHHHHhCCCCCCCC
Q 011714 457 YDACALYGAALKQGVIPQRK 476 (479)
Q Consensus 457 ~~A~~~~~~~~~~~~~p~~~ 476 (479)
++.+.+++.|..|+.+
T Consensus 267 ----~i~~~Ll~~Ga~~~~~ 282 (285)
T 1wdy_A 267 ----KIAELLCKRGASTDCG 282 (285)
T ss_dssp ----HHHHHHHHHSSCSCCS
T ss_pred ----HHHHHHHHcCCCCCcc
Confidence 4566667778877764
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=68.12 E-value=26 Score=24.07 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011714 99 NEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVL 178 (479)
Q Consensus 99 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 178 (479)
...++|..+-+.+...+. ....--+-+..+.+.|++++|..+.+.+. -||...|-+|.. .+.|..+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 345666666666555431 22222222344567778877777665443 567777766644 4677777777777
Q ss_pred HHHhhCCCCCCHHHHH
Q 011714 179 DQMGRIGCKPNIQTYN 194 (479)
Q Consensus 179 ~~~~~~~~~~~~~~~~ 194 (479)
.++...| .|....|.
T Consensus 92 ~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 92 AGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHTCS-SHHHHHHH
T ss_pred HHHHhCC-CHHHHHHH
Confidence 7777666 44444443
No 275
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=67.43 E-value=28 Score=24.02 Aligned_cols=88 Identities=18% Similarity=0.158 Sum_probs=52.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011714 98 LNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEV 177 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 177 (479)
....++|..+-+.+...+. ....--+-+..+.+.|++++|..+.+.+. -||...|-+|.. .+.|..+++...
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 3455666666666655431 22222222345667788888877766543 577777776654 466777777777
Q ss_pred HHHHhhCCCCCCHHHHH
Q 011714 178 LDQMGRIGCKPNIQTYN 194 (479)
Q Consensus 178 ~~~~~~~~~~~~~~~~~ 194 (479)
+.++...| .|....|.
T Consensus 92 L~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 92 LNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHTTCC-CHHHHHHH
T ss_pred HHHHHhCC-CHHHHHHH
Confidence 77777766 44444443
No 276
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=67.38 E-value=27 Score=23.99 Aligned_cols=78 Identities=19% Similarity=0.172 Sum_probs=36.6
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011714 135 DFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLM 214 (479)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 214 (479)
..++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.+. .||...|..|.. .+.|-.+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 44555555555554431 11111111223445566666655544433 455555544433 35555555555555
Q ss_pred HHHHCC
Q 011714 215 NVKNDG 220 (479)
Q Consensus 215 ~~~~~~ 220 (479)
.+...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555443
No 277
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=66.48 E-value=29 Score=23.92 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=35.5
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011714 135 DFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLM 214 (479)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 214 (479)
..++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.+. .||...|..|.. .+.|-.+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555554431 11111111223445566666655554433 455555544433 34455555555555
Q ss_pred HHHHCC
Q 011714 215 NVKNDG 220 (479)
Q Consensus 215 ~~~~~~ 220 (479)
.+...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 554443
No 278
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=65.62 E-value=38 Score=27.89 Aligned_cols=88 Identities=10% Similarity=-0.067 Sum_probs=41.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc--CCCC----chHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011714 377 IRTLGKGKKTDEALIHLHHAIEM--GHIP----RTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKL 450 (479)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (479)
+..+....++++|.+++++..+. +..+ ........+..-.....-.-+..+.+++ .. .+........+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHHH
Confidence 45556666777776666654432 1111 1111122222222222222333333333 22 33455555566667
Q ss_pred hccCCHhHHHHHHHHHH
Q 011714 451 DQLEKSYDACALYGAAL 467 (479)
Q Consensus 451 ~~~g~~~~A~~~~~~~~ 467 (479)
.+.|+.++|.++|-+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 77777777777766554
No 279
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=65.57 E-value=72 Score=28.18 Aligned_cols=69 Identities=14% Similarity=0.218 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCcCHHH
Q 011714 263 FNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGK--IRPAVSIFKEMVRFGFEVDERM 332 (479)
Q Consensus 263 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 332 (479)
...++.-|...|+.++|.+.++++....+. .......+..++-+.++ .+....++..+...|+-.....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 467788888899999999999888643222 23344455555554433 3456777777777765544333
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=65.30 E-value=24 Score=29.54 Aligned_cols=22 Identities=5% Similarity=-0.070 Sum_probs=10.5
Q ss_pred hcCChhhHHHHHHHHHhCCCCC
Q 011714 272 KEGTPMKGVGLLKLMKKRNCLP 293 (479)
Q Consensus 272 ~~g~~~~a~~~~~~~~~~~~~~ 293 (479)
..++.....++++.+.+.|..+
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCS
T ss_pred HccccchHHHHHHHHHHcCCCC
Confidence 3444444445555555555433
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=62.70 E-value=47 Score=25.04 Aligned_cols=53 Identities=15% Similarity=0.195 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhCCC-CCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCC
Q 011714 422 DKALLLLFLMYEHAK-IPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIPQ 474 (479)
Q Consensus 422 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 474 (479)
+++..+|..|..+++ .--...|......+...|++++|.++|+..++.+-+|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 448899999998877 34556788888899999999999999999999887773
No 282
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=61.48 E-value=50 Score=24.91 Aligned_cols=52 Identities=15% Similarity=0.262 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 011714 137 FEARKVIDCMFDNGYHPN-VTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKP 188 (479)
Q Consensus 137 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 188 (479)
+++.++|..|...|+... +..|......+...|++.+|.++|+.-++.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 346667777766655433 4455666666666677777777776666655555
No 283
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=59.81 E-value=69 Score=26.32 Aligned_cols=90 Identities=13% Similarity=0.098 Sum_probs=47.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCC----CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 90 DLLMALVMLNEQETAVKFFSEASSY--GLAP----NSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 90 ~ll~~~~~~~~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
--++.+....++++|+.++++..+. +.++ ........+..-.....-.-+..+.+.+.. ..+.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 3566777788888888888876532 1121 111222233333333333334444444422 334555555666
Q ss_pred HHHhcCChHHHHHHHHHHh
Q 011714 164 SLCKSGRLKEALEVLDQMG 182 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~ 182 (479)
.+.+.|+.++|.++|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 6667777777777665543
No 284
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=57.73 E-value=1e+02 Score=27.26 Aligned_cols=74 Identities=14% Similarity=0.061 Sum_probs=46.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC--hhhHHHHHHHHHhCCCCCCHhHHHHHH
Q 011714 228 YTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGT--PMKGVGLLKLMKKRNCLPDKISYSTLL 302 (479)
Q Consensus 228 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 302 (479)
...++.-|...|+.++|.+.++++..-... ...+...+..++-+.++ .+...+++..+...|+-+.......+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 577888899999999999999998532111 22334444555544433 345777888888777654444433333
No 285
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=56.92 E-value=43 Score=28.33 Aligned_cols=185 Identities=10% Similarity=0.008 Sum_probs=82.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH---HHHHHHHHHHh
Q 011714 91 LLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVT---TFTILVNSLCK 167 (479)
Q Consensus 91 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~ 167 (479)
.+...+..|+.+.+..+++ .|..++...-.+.+...+..|+.+-+.. +.+.|..++.. -++. +...+.
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~d~~g~t~-L~~A~~ 104 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVKI----LLFSGLDDSQFDDKGNTA-LYYAVD 104 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHHH----HHHTTCCTTCCCTTSCCH-HHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHHCCCCCCCcCCCCCcH-HHHHHH
Confidence 4455566787765555444 3433332222334455556677654433 44445444322 2222 333445
Q ss_pred cCChHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHH
Q 011714 168 SGRLKEALEVLDQMGRIGCKPNI---QTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKP-DVYTYTAVMDGFCKVGRSNE 243 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~ 243 (479)
.|+.+-+.-+++. |..++. ..+.+.+...+..|+.+-+.. +.+.|..+ +...-...+...+..|..+-
T Consensus 105 ~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~ 176 (285)
T 3kea_A 105 SGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSY----FLSEIPSTFDLAILLSCIHITIKNGHVDM 176 (285)
T ss_dssp TTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHH----HHTTSCTTCCCSTHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHHHH----HHhCCCccccccCCccHHHHHHHcChHHH
Confidence 6776655554443 322221 111233444455666543333 33333322 11022333445556677666
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhH
Q 011714 244 AMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKIS 297 (479)
Q Consensus 244 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 297 (479)
+.-+++.-...... +...++..+...+..|+. ++.+.+.+.|..++...
T Consensus 177 v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 177 MILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred HHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 65555543332211 111222223333444443 34445556666655543
No 286
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=55.03 E-value=69 Score=24.52 Aligned_cols=52 Identities=8% Similarity=0.118 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC
Q 011714 138 EARKVIDCMFDNGYHPN-VTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN 189 (479)
Q Consensus 138 ~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 189 (479)
.+.++|..|...|+... +..|......+-..|++.+|.++|..-++.+..|-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 35666666666655433 44455666666666677777777666666655554
No 287
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=54.57 E-value=93 Score=26.80 Aligned_cols=25 Identities=0% Similarity=0.185 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 011714 88 FNDLLMALVMLNEQETAVKFFSEAS 112 (479)
Q Consensus 88 ~~~ll~~~~~~~~~~~A~~~~~~~~ 112 (479)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3567788888888888888888764
No 288
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=53.66 E-value=1.3e+02 Score=27.48 Aligned_cols=86 Identities=19% Similarity=0.117 Sum_probs=51.0
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCC-----HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC
Q 011714 381 GKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGK-----IDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEK 455 (479)
Q Consensus 381 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 455 (479)
.+.++.+.|+.++.+|.+.|..|....-..+..+...-|. ...|...++.....|.+-........+--++.+-+
T Consensus 266 irgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~pe~~~~l~~~~~~la~~pk 345 (447)
T 3pvs_A 266 VRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPK 345 (447)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCc
Confidence 3567899999999999998887776666666666666555 33456666666667633222223333333344444
Q ss_pred HhHHHHHHHHH
Q 011714 456 SYDACALYGAA 466 (479)
Q Consensus 456 ~~~A~~~~~~~ 466 (479)
...+...++.+
T Consensus 346 sn~~~~a~~~a 356 (447)
T 3pvs_A 346 SNAVYTAFKAA 356 (447)
T ss_dssp CCHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 44444444433
No 289
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=52.46 E-value=90 Score=26.95 Aligned_cols=84 Identities=8% Similarity=-0.071 Sum_probs=40.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCc---hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 011714 378 RTLGKGKKTDEALIHLHHAIEMGHIPR---TITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLE 454 (479)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (479)
...+..|..+.+..+++. .+..++ ..-.+.|..| +..|+.+ +.+.+++.|..++..+ .| ....+.|
T Consensus 244 ~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll~~GAd~n~~~--~L-~~A~~~~ 312 (337)
T 4g8k_A 244 ILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKK----IAELLCKRGASTDCGD--LV-MTARRNY 312 (337)
T ss_dssp HHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHHTTSCSSTTCC--HH-HHHHHTT
T ss_pred HHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHHHCCCCCCCCC--HH-HHHHHcC
Confidence 344556666655544431 122222 2222334333 3456654 3444456666555543 22 3334555
Q ss_pred CHhHHHHHHHHHHhCCCCCCCC
Q 011714 455 KSYDACALYGAALKQGVIPQRK 476 (479)
Q Consensus 455 ~~~~A~~~~~~~~~~~~~p~~~ 476 (479)
+. ++++.+++.|-.||..
T Consensus 313 ~~----~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 313 DH----SLVKVLLSHGAKEDFH 330 (337)
T ss_dssp CH----HHHHHHHHTTCCC---
T ss_pred CH----HHHHHHHHCcCCCCCC
Confidence 54 4566777888777754
No 290
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=52.30 E-value=1.8e+02 Score=28.39 Aligned_cols=83 Identities=7% Similarity=-0.080 Sum_probs=40.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHhccc
Q 011714 266 LFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGF-EVDERMMNSLLRGLCMKS 344 (479)
Q Consensus 266 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 344 (479)
....+.-.|+++.|+.++-.. ...+..++...+.- .|-.... ..+..... .| ..-+..++..|.+.
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~---~gLL~~~----~~lls~~~~~~-~lN~arLI~~Yt~~- 366 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLAS---LKLFKID----SSTRLTKKPKR-DIRFANILANYTKS- 366 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHH---TTC----------------------CHHHHHHHHHTT-
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHH---cCCccCC----CcccccCCCcc-cccHHHHHHHHHHH-
Confidence 445556678888888876643 22344444444333 2222211 11111100 11 23356677777654
Q ss_pred chhhccHHHHHHHHHHHH
Q 011714 345 WEEKDLLEDAYQVFEKMT 362 (479)
Q Consensus 345 ~~~~~~~~~a~~~~~~~~ 362 (479)
-+..+...|.+.|-.+.
T Consensus 367 -F~~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 367 -FRYSDPRVAVEYLVLIT 383 (661)
T ss_dssp -TTTTCHHHHHHHHHGGG
T ss_pred -hhcCCHHHHHHHHHHHh
Confidence 26678888888777663
No 291
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=48.70 E-value=87 Score=23.85 Aligned_cols=62 Identities=10% Similarity=0.049 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHH
Q 011714 51 SLQAQRFVDRIKASPLKERIDIFDSIKKDGTNW--SVSDFNDLLM-A-----LVMLNEQETAVKFFSEAS 112 (479)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~-~-----~~~~~~~~~A~~~~~~~~ 112 (479)
...+...+..+..+.+-+|-++++.+-+....+ ....|..||+ . ..+.|+...|..++.+..
T Consensus 33 ~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 33 RRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344555666666677777777777766554444 3444555555 1 123566666666666654
No 292
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=48.69 E-value=76 Score=25.53 Aligned_cols=28 Identities=11% Similarity=-0.012 Sum_probs=15.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011714 91 LLMALVMLNEQETAVKFFSEASSYGLAP 118 (479)
Q Consensus 91 ll~~~~~~~~~~~A~~~~~~~~~~~~~~ 118 (479)
.+...+..|+.+....+++.+.+.|..+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 3444555677666666666555554333
No 293
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=48.22 E-value=1e+02 Score=25.02 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 011714 102 ETAVKFFSEASSYGLAPN-SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPN 154 (479)
Q Consensus 102 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 154 (479)
+.+..+|..|...|+.-. ..-|......+...|++.+|.++|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 456677777777665443 44566666777777777777777777776655553
No 294
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=47.10 E-value=1.1e+02 Score=24.35 Aligned_cols=85 Identities=19% Similarity=0.117 Sum_probs=49.3
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCC-----HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC
Q 011714 381 GKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGK-----IDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEK 455 (479)
Q Consensus 381 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 455 (479)
.+..+.+.|+-++-+|++.| .|....-..++.+....|. ...|...++.....|.+--.......+--++.+-+
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~LaqaviyLA~aPK 103 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVVVDLCLSPK 103 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHSCC
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc
Confidence 45678888888888888888 6666555566666666555 33455556666666644333333333334444444
Q ss_pred HhHHHHHHHHH
Q 011714 456 SYDACALYGAA 466 (479)
Q Consensus 456 ~~~A~~~~~~~ 466 (479)
...+...++.+
T Consensus 104 SNs~y~A~~~A 114 (204)
T 2r9g_A 104 SNSAYMALDAA 114 (204)
T ss_dssp CCHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 44444444443
No 295
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=45.89 E-value=1.1e+02 Score=24.19 Aligned_cols=55 Identities=18% Similarity=0.115 Sum_probs=30.5
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCC-----HHHHHHHHHHHHhCC
Q 011714 381 GKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGK-----IDKALLLLFLMYEHA 435 (479)
Q Consensus 381 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~ 435 (479)
.+..+.+.|+-++-+|++.|..|....-..++.+....|. ...|...++.....|
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 3456677777777777776666555544445555544443 233444455555555
No 296
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=44.65 E-value=1.2e+02 Score=27.35 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=18.6
Q ss_pred HHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHH
Q 011714 71 DIFDSIKKDGTNWSVSD--FNDLLMALVMLNEQETAVKFFS 109 (479)
Q Consensus 71 ~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~A~~~~~ 109 (479)
++++.+.+.|..++... ....+...+..|+.+-+..+++
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 68 (437)
T 1n11_A 28 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 68 (437)
T ss_dssp HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 34444555555443321 2234555556666665544443
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=43.98 E-value=90 Score=22.65 Aligned_cols=65 Identities=14% Similarity=0.207 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCc
Q 011714 263 FNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGK--IRPAVSIFKEMVRFGFEV 328 (479)
Q Consensus 263 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~ 328 (479)
...++.-|...|+.++|.+.++++....+. .......+..++-+.++ .+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 345666666777777777777766421111 12233334444444332 244556666666555443
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=42.92 E-value=44 Score=26.07 Aligned_cols=11 Identities=9% Similarity=0.202 Sum_probs=4.4
Q ss_pred ccCCHHHHHHH
Q 011714 237 KVGRSNEAMEL 247 (479)
Q Consensus 237 ~~~~~~~a~~~ 247 (479)
..|+.+....+
T Consensus 14 ~~g~~~~v~~l 24 (201)
T 3hra_A 14 NQRDTKKVKEI 24 (201)
T ss_dssp HTTCHHHHHHH
T ss_pred HhccHHHHHHH
Confidence 33444443333
No 299
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=42.89 E-value=1.3e+02 Score=24.10 Aligned_cols=57 Identities=21% Similarity=0.075 Sum_probs=34.7
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCC-----HHHHHHHHHHHHhCCCC
Q 011714 381 GKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGK-----IDKALLLLFLMYEHAKI 437 (479)
Q Consensus 381 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~ 437 (479)
.+..+.+.|+-++-+|++.|..|....-..++.+...-|. ...|...++.....|.+
T Consensus 46 iRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 46 IRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4556777777777777777766665555555555555444 33445555555555643
No 300
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=42.53 E-value=26 Score=28.33 Aligned_cols=14 Identities=21% Similarity=0.128 Sum_probs=6.7
Q ss_pred HHHHHHhcCCHHHH
Q 011714 91 LLMALVMLNEQETA 104 (479)
Q Consensus 91 ll~~~~~~~~~~~A 104 (479)
.+...+..|+.+-+
T Consensus 45 ~L~~A~~~~~~~~v 58 (240)
T 3eu9_A 45 LLHWAAINNRIDLV 58 (240)
T ss_dssp HHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCHHHH
Confidence 34444555555433
No 301
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=41.57 E-value=55 Score=25.48 Aligned_cols=13 Identities=0% Similarity=0.084 Sum_probs=5.9
Q ss_pred HhcCCHHHHHHHH
Q 011714 96 VMLNEQETAVKFF 108 (479)
Q Consensus 96 ~~~~~~~~A~~~~ 108 (479)
+..|+.+....++
T Consensus 13 ~~~g~~~~v~~ll 25 (201)
T 3hra_A 13 ANQRDTKKVKEIL 25 (201)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhccHHHHHHHH
Confidence 3445554444443
No 302
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=41.28 E-value=2.2e+02 Score=26.26 Aligned_cols=112 Identities=17% Similarity=0.126 Sum_probs=68.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011714 98 LNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEV 177 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 177 (479)
..+.+.|.++- .+.|++--...|..-...+...|++++|.++--...+ |+-.+..|.+.+-.+=...|+..-.+.+
T Consensus 342 l~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 35666555543 3445555566677777778888888888877666553 3455667766655544455666667777
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011714 178 LDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLM 214 (479)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 214 (479)
|..+.+.| +.+..---.+++.-...|+.+-..+++.
T Consensus 418 F~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~ 453 (494)
T 1bpo_A 418 FGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLK 453 (494)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHh
Confidence 77777665 4454433445555555666555555443
No 303
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=41.23 E-value=99 Score=22.91 Aligned_cols=37 Identities=5% Similarity=-0.244 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 011714 418 EGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLE 454 (479)
Q Consensus 418 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (479)
.+..-.|.++++.+.+.+...+..|...-++.+.+.|
T Consensus 34 ~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 34 SMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp CSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3333444444444444433333333333333333333
No 304
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=40.53 E-value=88 Score=23.54 Aligned_cols=65 Identities=14% Similarity=0.207 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCc
Q 011714 263 FNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGK--IRPAVSIFKEMVRFGFEV 328 (479)
Q Consensus 263 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~ 328 (479)
...++.-|...|+.++|.+.++++....+. .......+..++-+.++ .+.+..++..+...++-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 345666666667777777766666421111 12233333334443222 334555566665555433
No 305
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=40.48 E-value=1e+02 Score=22.47 Aligned_cols=60 Identities=13% Similarity=0.068 Sum_probs=34.7
Q ss_pred HHhCCCCCChhhHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCH
Q 011714 361 MTKKVSVTDPGTYGIVIRTLGKGK-KTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKI 421 (479)
Q Consensus 361 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 421 (479)
+.+.+..++. .-..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 9 l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4455555443 2344555565555 5667778888777765555555555555555555543
No 306
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=39.23 E-value=1.4e+02 Score=23.57 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 011714 54 AQRFVDRIKASPLKERIDIFDSIKKDGTNW 83 (479)
Q Consensus 54 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 83 (479)
.+.|.+.++.++++.|+-.+-+|.+.|-.|
T Consensus 11 ISAf~KSiRGSDpDAAly~LaRMl~~GEDp 40 (201)
T 3bge_A 11 ISALHKSVRGSAPDAALYWYARILTAGGDP 40 (201)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCH
Confidence 344555566666666666666666555443
No 307
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=38.49 E-value=1.1e+02 Score=22.92 Aligned_cols=46 Identities=11% Similarity=-0.022 Sum_probs=21.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCC
Q 011714 375 IVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGK 420 (479)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 420 (479)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3444444444455555555555544433344444334444444443
No 308
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=37.31 E-value=1.2e+02 Score=22.44 Aligned_cols=21 Identities=10% Similarity=0.112 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHcCCCcCHHHH
Q 011714 313 PAVSIFKEMVRFGFEVDERMM 333 (479)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~ 333 (479)
.|.++++.+.+.+...+..|.
T Consensus 35 ta~ei~~~l~~~~~~is~~TV 55 (145)
T 3eyy_A 35 TPDDILGEVRKTASGINISTV 55 (145)
T ss_dssp CHHHHHHHHHTTCTTCCHHHH
T ss_pred CHHHHHHHHHhhCCCCCHhHH
Confidence 344444444433333333333
No 309
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=37.10 E-value=36 Score=20.72 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN 119 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~ 119 (479)
.+......++.+ ..|+.+.|+..+-+|...+..|+
T Consensus 23 ld~~~I~~vL~a--~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 23 MDQEVIRSVLEA--QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp SCHHHHHHHHTT--TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred CCHHHHHHHHHH--cCCCHHHHHHHHHcCcCCCCCCC
Confidence 344433333333 26778888888877766555554
No 310
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=36.95 E-value=1.1e+02 Score=22.83 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=20.7
Q ss_pred HHHHHhcCC-CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCC
Q 011714 376 VIRTLGKGK-KTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGK 420 (479)
Q Consensus 376 l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 420 (479)
++..+...+ ..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 22 Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 22 ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 334444433 444555555555554444444444444444444443
No 311
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=36.67 E-value=89 Score=24.26 Aligned_cols=23 Identities=13% Similarity=0.067 Sum_probs=9.7
Q ss_pred HhcCChhhHHHHHHHHHhCCCCC
Q 011714 131 CNKNDFFEARKVIDCMFDNGYHP 153 (479)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~ 153 (479)
+..|+.+.-.++.+.+++.|..+
T Consensus 46 ~~~~~~~~~~~iv~~Ll~~Gadv 68 (186)
T 3t8k_A 46 LRNNNDEARYKISMFLINKGADI 68 (186)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCCS
T ss_pred HHcCCcchHHHHHHHHHHCCCCC
Confidence 33344333344444444444433
No 312
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=36.19 E-value=1.6e+02 Score=23.14 Aligned_cols=198 Identities=9% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011714 90 DLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSG 169 (479)
Q Consensus 90 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 169 (479)
.+...........+++..+-...+ .++...-...+..+.+.|..+....+.+.+. .++..+-...+.++.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~----~~~~~vr~~a~~aL~~~~ 78 (211)
T 3ltm_A 6 QFEKAAAPLRADPEKVEMYIKNLQ---DDSYYVRRAAAYALGKIGDERAVEPLIKALK----DEDAWVRRAAADALGQIG 78 (211)
T ss_dssp ----------CCGGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT----CSCHHHHHHHHHHHHHHC
T ss_pred ccchhhhHhhcCHhHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCccHHHHHHHHHc----CCCHHHHHHHHHHHHhhC
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 011714 170 RLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLN 249 (479)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 249 (479)
+.+....+.+.+. .++..+-...+.++.+.++.+....+.+.+. .++...-...+.++...|+.+....+..
T Consensus 79 ~~~~~~~L~~~l~----~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~~~~~L~~ 150 (211)
T 3ltm_A 79 DERAVEPLIKALK----DEDGWVRQSAAVALGQIGDERAVEPLIKALK----DEDWFVRIAAAFALGEIGDERAVEPLIK 150 (211)
T ss_dssp CGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGGGHHHHHH
T ss_pred CHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCC
Q 011714 250 EAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGK 310 (479)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 310 (479)
.+.+. +..+-...+.++.+.+. .++...+..+.+.+ +...-...+.++...+.
T Consensus 151 ~l~d~----~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d~---~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 151 ALKDE----DGWVRQSAADALGEIGG-ERVRAAMEKLAETG---TGFARKVAVNYLETHKS 203 (211)
T ss_dssp HTTCS----SHHHHHHHHHHHHHHCS-HHHHHHHHHHHHHC---CHHHHHHHHHHHHC---
T ss_pred HHcCC----CHHHHHHHHHHHHHhCc-hhHHHHHHHHHhCC---CHHHHHHHHHHHHhcCC
No 313
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=35.93 E-value=1.3e+02 Score=22.89 Aligned_cols=59 Identities=7% Similarity=-0.074 Sum_probs=30.1
Q ss_pred HhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCCCchHHHHHHHHHHHcCCCH
Q 011714 362 TKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEM--GHIPRTITFNNVIQALCGEGKI 421 (479)
Q Consensus 362 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~ 421 (479)
.+.|...+. --..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-.
T Consensus 25 ~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 25 RQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 344444332 2344555555555666666666666654 4444444444444555555543
No 314
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=35.87 E-value=3.2e+02 Score=26.62 Aligned_cols=41 Identities=15% Similarity=0.251 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 011714 90 DLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYC 131 (479)
Q Consensus 90 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (479)
.+|..|.+.|++++|.++.++.... +..-...+...+..|+
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~ 197 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYA 197 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC-
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHH
Confidence 4677788899999998888766432 1111234555555555
No 315
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=35.86 E-value=2.6e+02 Score=25.59 Aligned_cols=37 Identities=14% Similarity=0.026 Sum_probs=19.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 011714 203 VGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 239 (479)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 239 (479)
.++.+.|+.++.+|.+.|..|....-..++.+.-..|
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 4556666666666666655544444444444443333
No 316
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=35.31 E-value=21 Score=29.62 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=26.9
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCCHHH-------HHHHHHHHH--hcCCHHHHHHHHHHH
Q 011714 57 FVDRIKASPLKERIDIFDSIKKDGTNWSVSD-------FNDLLMALV--MLNEQETAVKFFSEA 111 (479)
Q Consensus 57 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~ll~~~~--~~~~~~~A~~~~~~~ 111 (479)
+...++.|+.+....+++.+.+.+..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 4455566666665556665555444444222 223333321 446655555555543
No 317
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=35.07 E-value=57 Score=20.33 Aligned_cols=44 Identities=16% Similarity=0.027 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 011714 88 FNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCN 132 (479)
Q Consensus 88 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (479)
++.++..++...-.+.++..++++.+.| ..+...|-.-.+..++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4555666666666666666666666666 4555555555554444
No 318
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=34.29 E-value=1.7e+02 Score=23.15 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 011714 52 LQAQRFVDRIKASPLKERIDIFDSIKKDG 80 (479)
Q Consensus 52 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (479)
...+.|.+.++.++++.|+-.+-+|.+.|
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG 44 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 34455666666666666666666666666
No 319
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=33.46 E-value=1.8e+02 Score=23.20 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=26.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-----hhhHHHHHHHHHhCCCC
Q 011714 98 LNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKND-----FFEARKVIDCMFDNGYH 152 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 152 (479)
-.+.+.|+-.+-+|.+.|-.|....-..++.+.-..|. +..|...++.....|.+
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 45666666666666665544443333334444333332 23344444555555543
No 320
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=33.45 E-value=1.4e+02 Score=21.98 Aligned_cols=22 Identities=5% Similarity=-0.062 Sum_probs=9.3
Q ss_pred HHHhcCChhhHHHHHHHHHhCC
Q 011714 269 GYCKEGTPMKGVGLLKLMKKRN 290 (479)
Q Consensus 269 ~~~~~g~~~~a~~~~~~~~~~~ 290 (479)
.+...+.+-.|.++++.+.+.+
T Consensus 30 ~L~~~~~~~sa~ei~~~l~~~~ 51 (145)
T 2fe3_A 30 YLVNSMAHPTADDIYKALEGKF 51 (145)
T ss_dssp HHHHCSSCCCHHHHHHHHGGGC
T ss_pred HHHhCCCCCCHHHHHHHHHHhC
Confidence 3333333444444444444443
No 321
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.22 E-value=1.5e+02 Score=22.20 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=10.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHH
Q 011714 125 IMIRCYCNKNDFFEARKVIDCM 146 (479)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~ 146 (479)
.++.-|...|+.++|.+.++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444444444444444444444
No 322
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=32.95 E-value=88 Score=23.23 Aligned_cols=34 Identities=12% Similarity=-0.087 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCC
Q 011714 386 TDEALIHLHHAIEMGHIPRTITFNNVIQALCGEG 419 (479)
Q Consensus 386 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 419 (479)
.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3445555555544433333333333333333333
No 323
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=32.80 E-value=1.5e+02 Score=22.04 Aligned_cols=14 Identities=14% Similarity=0.083 Sum_probs=5.8
Q ss_pred hhhHHHHHHHHHhC
Q 011714 276 PMKGVGLLKLMKKR 289 (479)
Q Consensus 276 ~~~a~~~~~~~~~~ 289 (479)
+-.|.++++.+.+.
T Consensus 33 h~sa~ei~~~l~~~ 46 (150)
T 2w57_A 33 HISAEELYKKLIDL 46 (150)
T ss_dssp SEEHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHh
Confidence 33344444444433
No 324
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=32.63 E-value=1e+02 Score=26.90 Aligned_cols=87 Identities=7% Similarity=0.045 Sum_probs=38.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHh--HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011714 91 LLMALVMLNEQETAVKFFSEASSYGLAPNSWT--FSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKS 168 (479)
Q Consensus 91 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (479)
.+...+..|+.+.+..+++ .|..++... -.+.+...+..|+.+-+..+ .+.|..++...-...+...+..
T Consensus 23 ~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~A~~~ 94 (364)
T 3ljn_A 23 KIHVAARKGQTDEVRRLIE----TGVSPTIQNRFGCTALHLACKFGCVDTAKYL----ASVGEVHSLWHGQKPIHLAVMA 94 (364)
T ss_dssp HHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHH----HHHCCCCCCBTTBCHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCCHHHHHHH----HHCCCCccccCCCCHHHHHHHc
Confidence 3444445666655444443 343333211 12233444455665443333 3333333321112233334456
Q ss_pred CChHHHHHHHHHHhhCC
Q 011714 169 GRLKEALEVLDQMGRIG 185 (479)
Q Consensus 169 g~~~~a~~~~~~~~~~~ 185 (479)
|+.+-+..+++.....|
T Consensus 95 g~~~~v~~Ll~~~~~~~ 111 (364)
T 3ljn_A 95 NKTDLVVALVEGAKERG 111 (364)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhccccC
Confidence 77666666666544433
No 325
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=32.47 E-value=1.4e+02 Score=21.66 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHcCCCcCHHH
Q 011714 312 RPAVSIFKEMVRFGFEVDERM 332 (479)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~ 332 (479)
-.|.++++.+.+.+...+..|
T Consensus 35 ~sa~ei~~~l~~~~~~is~aT 55 (136)
T 1mzb_A 35 MSAEDVYKALMEAGEDVGLAT 55 (136)
T ss_dssp BCHHHHHHHHHHTTCCCCHHH
T ss_pred CCHHHHHHHHHhhCCCCCHHH
Confidence 334444444433333333333
No 326
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=32.36 E-value=75 Score=21.40 Aligned_cols=20 Identities=15% Similarity=-0.062 Sum_probs=9.5
Q ss_pred HHHHHhccCCHhHHHHHHHH
Q 011714 446 LITKLDQLEKSYDACALYGA 465 (479)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~ 465 (479)
..+.+.+.|++++|++..++
T Consensus 21 rAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 21 RADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHH
Confidence 34444555555555444443
No 327
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.20 E-value=3.5e+02 Score=27.80 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcC
Q 011714 226 YTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNV----VTFNTLFNGYCKEG 274 (479)
Q Consensus 226 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 274 (479)
.-|..++..+-+.+.++.+.++-+.+++.-...|. ..|+.+..+.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 46778888888889998888888888764222222 35666666666544
No 328
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=32.18 E-value=2.2e+02 Score=23.70 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=28.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHH
Q 011714 196 LLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK-VGRSNEAMELLNEA 251 (479)
Q Consensus 196 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~ 251 (479)
+....-+.++++++.+..+.+.+.+...+..--|.|--+|-. .|....+++++..+
T Consensus 37 ~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissi 93 (261)
T 3ubw_A 37 QAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSI 93 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHH
Confidence 344445556666666666666655555555544444444422 23334445554443
No 329
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=31.37 E-value=22 Score=29.54 Aligned_cols=24 Identities=0% Similarity=-0.022 Sum_probs=11.9
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCC
Q 011714 130 YCNKNDFFEARKVIDCMFDNGYHP 153 (479)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~ 153 (479)
.++.|+.+....+++.+.+.|..+
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~ 35 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRL 35 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCT
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCc
Confidence 344555555555555554444333
No 330
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=30.35 E-value=2.7e+02 Score=24.93 Aligned_cols=335 Identities=15% Similarity=0.155 Sum_probs=153.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH--HHHHHHHHH
Q 011714 90 DLLMALVMLNEQETAVKFFSEASSYGLAPNSW--TFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVT--TFTILVNSL 165 (479)
Q Consensus 90 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~ 165 (479)
+.+...+..|+.+-+..++ +.|..++.. .....+...+..|+.+-+..+++ .|..++.. .-...+...
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 87 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCA 87 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHH
Confidence 3566667788877555554 445555432 12345556667788765555544 34333221 112234445
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 011714 166 CKSGRLKEALEVLDQMGRIGCKPNI---QTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 242 (479)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 242 (479)
+..|+.+-+.-+++. |..++. ... ..+...+..|+.+-+..+++.-..... .+...++ .+...+..|+.+
T Consensus 88 ~~~g~~~~v~~Ll~~----ga~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t-~L~~A~~~g~~~ 160 (437)
T 1n11_A 88 ARIGHTNMVKLLLEN----NANPNLATTAGH-TPLHIAAREGHVETVLALLEKEASQAC-MTKKGFT-PLHVAAKYGKVR 160 (437)
T ss_dssp HHHTCHHHHHHHHHH----TCCTTCCCTTCC-CHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCC-HHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHhC----CCCCCCCCCCCC-cHHHHHHHcCCHHHHHHHHhCCCCCcC-CCCCCCC-HHHHHHHcCCHH
Confidence 567777655544443 433321 112 233445567777666555543211111 1222222 344455667765
Q ss_pred HHHHHHHHHHHCCCCCCHhh--HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHh---HHHHHHHHHHhcCChHHHHHH
Q 011714 243 EAMELLNEAIERGVTPNVVT--FNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKI---SYSTLLNGLLKWGKIRPAVSI 317 (479)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~ 317 (479)
-+. .+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++.. -++. +...+..|+.+-+
T Consensus 161 ~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~--- 228 (437)
T 1n11_A 161 VAE----LLLERDAHPNAAGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTP-LHIAAKQNQVEVA--- 228 (437)
T ss_dssp HHH----HHHHTTCCTTCCCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCH-HHHHHHTTCHHHH---
T ss_pred HHH----HHHhCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCH-HHHHHHcCCHHHH---
Confidence 443 4444554443221 112334445566654 444455555444332 2223 3344566775444
Q ss_pred HHHHHHcCCCcCH---HHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHhcCCCHHHHHH
Q 011714 318 FKEMVRFGFEVDE---RMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTD---PGTYGIVIRTLGKGKKTDEALI 391 (479)
Q Consensus 318 ~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~ 391 (479)
+.+.+.|..++. .-...+..+. ..|..+-...+ .+.+..++ ....+.+ ...+..|..+-+..
T Consensus 229 -~~Ll~~g~~~~~~~~~g~t~L~~A~------~~g~~~~v~~L----l~~~~~~~~~~~~g~t~L-~~A~~~~~~~~~~~ 296 (437)
T 1n11_A 229 -RSLLQYGGSANAESVQGVTPLHLAA------QEGHAEMVALL----LSKQANGNLGNKSGLTPL-HLVAQEGHVPVADV 296 (437)
T ss_dssp -HHHHHTTCCTTCCCTTCCCHHHHHH------HTTCHHHHHHH----HTTTCCTTCCCTTCCCHH-HHHHHHTCHHHHHH
T ss_pred -HHHHHcCCCCCCCCCCCCCHHHHHH------HCCCHHHHHHH----HhcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHH
Confidence 444455543322 1122233332 33555544333 33333222 2223333 33345566554443
Q ss_pred HHHHHHHcCCCCch---HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHhccCCHhHHHHHHHH
Q 011714 392 HLHHAIEMGHIPRT---ITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSR---TSYDMLITKLDQLEKSYDACALYGA 465 (479)
Q Consensus 392 ~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 465 (479)
+ .+.|..++. .-.+.|. ..+..|+.+-+.. +.+.|..++. .-.+.|. .....|+. ++++.
T Consensus 297 L----l~~g~~~~~~~~~g~t~L~-~A~~~g~~~~v~~----Ll~~gad~n~~~~~g~t~L~-~A~~~g~~----~iv~~ 362 (437)
T 1n11_A 297 L----IKHGVMVDATTRMGYTPLH-VASHYGNIKLVKF----LLQHQADVNAKTKLGYSPLH-QAAQQGHT----DIVTL 362 (437)
T ss_dssp H----HHHTCCTTCCCSSCCCHHH-HHHHSSCSHHHHH----HHHTTCCTTCCCTTSCCHHH-HHHHTTCH----HHHHH
T ss_pred H----HhCCccCCCCCCCCCCHHH-HHHHcCcHHHHHH----HHhcCCCCCCCCCCCCCHHH-HHHHCChH----HHHHH
Confidence 3 344444332 2223333 3345677654443 4444543332 2223333 33455654 45666
Q ss_pred HHhCCCCCCCCC
Q 011714 466 ALKQGVIPQRKP 477 (479)
Q Consensus 466 ~~~~~~~p~~~~ 477 (479)
+++.|..|+.+.
T Consensus 363 Ll~~ga~~~~~~ 374 (437)
T 1n11_A 363 LLKNGASPNEVS 374 (437)
T ss_dssp HHHTTCCSCCCC
T ss_pred HHHCcCCCCCCC
Confidence 777888887654
No 331
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.15 E-value=1.7e+02 Score=21.77 Aligned_cols=31 Identities=10% Similarity=-0.042 Sum_probs=12.3
Q ss_pred ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 011714 310 KIRPAVSIFKEMVRFGFEVDERMMNSLLRGL 340 (479)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (479)
..-.|.++++.+.+.+...+..|....+..+
T Consensus 41 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L 71 (150)
T 2xig_A 41 THLSPEEITHSIRQKDKNTSISSVYRILNFL 71 (150)
T ss_dssp SCBCHHHHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHH
Confidence 3344444444444333333333333333333
No 332
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=29.99 E-value=2.1e+02 Score=22.75 Aligned_cols=24 Identities=17% Similarity=0.015 Sum_probs=11.9
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCC
Q 011714 234 GFCKVGRSNEAMELLNEAIERGVT 257 (479)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~ 257 (479)
..+..|+.+.+..+++.+.+.+..
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Confidence 344455555555555544444433
No 333
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.88 E-value=3.5e+02 Score=25.32 Aligned_cols=64 Identities=14% Similarity=0.043 Sum_probs=36.0
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCCHH--H-HHHHHHHHHhcCChHHHHHHHHHHhh
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGY-HPNVT--T-FTILVNSLCKSGRLKEALEVLDQMGR 183 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~--~-~~~li~~~~~~g~~~~a~~~~~~~~~ 183 (479)
...++.+++.|...+.++.|..+..+..--.. .++.. . +-.+...+.-.+++.+|.+.+.....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55666777777777777777777766631100 01111 1 22345555666777777777666554
No 334
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=29.79 E-value=1.4e+02 Score=25.04 Aligned_cols=202 Identities=9% Similarity=-0.034 Sum_probs=91.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH---hHHHHHHHHHHhc
Q 011714 232 MDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDK---ISYSTLLNGLLKW 308 (479)
Q Consensus 232 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 308 (479)
+...+..|+.+-+..++ +.|..++...-.+.+...+..|+.+-+.. +.+.|..++. .-.+.+ ...+..
T Consensus 35 L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~d~~g~t~L-~~A~~~ 105 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVKI----LLFSGLDDSQFDDKGNTAL-YYAVDS 105 (285)
T ss_dssp HHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHHH----HHHTTCCTTCCCTTSCCHH-HHHHHT
T ss_pred HHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHHCCCCCCCcCCCCCcHH-HHHHHc
Confidence 34455677766554444 44544443322344555566777654443 3445554432 222333 334556
Q ss_pred CChHHHHHHHHHHHHcCCCcCHH---H-HHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhcC
Q 011714 309 GKIRPAVSIFKEMVRFGFEVDER---M-MNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVT-DPGTYGIVIRTLGKG 383 (479)
Q Consensus 309 ~~~~~a~~~~~~~~~~~~~~~~~---~-~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 383 (479)
|+.+-+..++ +.|..++.. - .+.+..+. ..|..+-+ +.+.+.+..+ +...-...+...+..
T Consensus 106 g~~~~v~~Ll----~~ga~~~~~~~~g~~t~L~~A~------~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~ 171 (285)
T 3kea_A 106 GNMQTVKLFV----KKNWRLMFYGKTGWKTSFYHAV------MLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKN 171 (285)
T ss_dssp TCHHHHHHHH----HHCGGGGGCSSSGGGSHHHHHH------HTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHT
T ss_pred CCHHHHHHHH----hcCCCCCccCCCCCCCHHHHHH------HcCCHHHH----HHHHhCCCccccccCCccHHHHHHHc
Confidence 7665444443 344433321 1 12222222 33555433 3334444332 211223444455567
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHH
Q 011714 384 KKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALY 463 (479)
Q Consensus 384 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 463 (479)
|..+-+..+++.-...... +..-....+...+..|+. ++.+.+.+.|..++.... .-...|+.+-+.-++
T Consensus 172 g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~~Ll 241 (285)
T 3kea_A 172 GHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANL-----ENVLLDDAEIAKMII 241 (285)
T ss_dssp TCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTG-----GGGTTTCHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCCh-----hhhhcCCHHHHHHHH
Confidence 7777666666554433222 222222223333344553 345555666765555442 113456555554444
Q ss_pred HHH
Q 011714 464 GAA 466 (479)
Q Consensus 464 ~~~ 466 (479)
+.-
T Consensus 242 ~~g 244 (285)
T 3kea_A 242 EKH 244 (285)
T ss_dssp HHH
T ss_pred HcC
Confidence 443
No 335
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=28.10 E-value=48 Score=20.17 Aligned_cols=22 Identities=9% Similarity=0.128 Sum_probs=14.9
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCC
Q 011714 98 LNEQETAVKFFSEASSYG-LAPN 119 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~-~~~~ 119 (479)
.=+++.|+..|.++...| ++|+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHH
Confidence 347788888888877554 4544
No 336
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=27.84 E-value=1.5e+02 Score=20.29 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 011714 69 RIDIFDSIKKDGTNWSVSDFNDLLMALVM 97 (479)
Q Consensus 69 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 97 (479)
|.++.+++..-|+.|+..+...++..|..
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~ 56 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQ 56 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 337
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=27.77 E-value=2.7e+02 Score=23.24 Aligned_cols=20 Identities=15% Similarity=-0.001 Sum_probs=11.7
Q ss_pred HHhcCCCHHHHHHHHHHHHH
Q 011714 379 TLGKGKKTDEALIHLHHAIE 398 (479)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~ 398 (479)
.|--.++.++|..+-+++.+
T Consensus 187 yYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 187 YYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 34456677776666655543
No 338
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=27.59 E-value=54 Score=19.98 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011714 352 EDAYQVFEKMTKKVSVTDPGTYGIVIRTL 380 (479)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (479)
++|.+.|.+|.+....+...+|...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34555565555443333445666666555
No 339
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=27.10 E-value=2e+02 Score=21.72 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=10.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhC
Q 011714 266 LFNGYCKEGTPMKGVGLLKLMKKR 289 (479)
Q Consensus 266 l~~~~~~~g~~~~a~~~~~~~~~~ 289 (479)
++..+...+.+-.|.++++.+.+.
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhh
Confidence 333444444444444444444443
No 340
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=27.08 E-value=2.1e+02 Score=21.78 Aligned_cols=51 Identities=12% Similarity=-0.054 Sum_probs=30.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC--CHHhHHHHHH-H-----HHhcCChhhHHHHHHHHH
Q 011714 97 MLNEQETAVKFFSEASSYGLAP--NSWTFSIMIR-C-----YCNKNDFFEARKVIDCMF 147 (479)
Q Consensus 97 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~ 147 (479)
..|++-+|-++++..-+....+ ....|..||+ . ..+.|+...|..++.+..
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3477777777777765543334 3445556665 2 234567777777666664
No 341
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=27.05 E-value=1.8e+02 Score=21.02 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=10.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHH
Q 011714 125 IMIRCYCNKNDFFEARKVIDCM 146 (479)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~ 146 (479)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444444444444444444
No 342
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=26.99 E-value=1e+02 Score=19.17 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 011714 158 FTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCY 202 (479)
Q Consensus 158 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 202 (479)
++-++..+++..-.++++..+++..+.| ..+..+|.--++.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3444455555555555555555555555 3444455444444433
No 343
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.72 E-value=1.3e+02 Score=21.54 Aligned_cols=41 Identities=10% Similarity=0.019 Sum_probs=21.5
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011714 73 FDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASS 113 (479)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 113 (479)
|+.+.+..+.+++..--.-+..+...++++.|..+...+..
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444544443333333444556677777777666654
No 344
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.56 E-value=1.5e+02 Score=20.06 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 011714 99 NEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEAR 140 (479)
Q Consensus 99 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (479)
...+.|.++++.+.++| ..+|..++.++...|+...|.
T Consensus 51 t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHH
Confidence 35566666666666544 245666666665555544443
No 345
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=26.45 E-value=2.2e+02 Score=21.89 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHCCCCCCH
Q 011714 242 NEAMELLNEAIERGVTPNV 260 (479)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~ 260 (479)
....++.+.+++.|..++.
T Consensus 91 ~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 91 TGTTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHHHHHHHHTTCCSSS
T ss_pred hhHHHHHHHHHHCCCCCCc
Confidence 3344555555555554443
No 346
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.04 E-value=5.5e+02 Score=26.33 Aligned_cols=49 Identities=18% Similarity=0.122 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccC
Q 011714 191 QTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDV----YTYTAVMDGFCKVG 239 (479)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~ 239 (479)
.-|..++..+-+.+-++.+.++-+...+.--.-|. ..|..+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 36788888899999999888888887764222122 35666666665543
No 347
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.99 E-value=1.5e+02 Score=21.35 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 011714 311 IRPAVSIFKEMVRFGFEVDERMMNSLLRGL 340 (479)
Q Consensus 311 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (479)
.-.|.++++.+.+.+...+..|....+..+
T Consensus 26 ~~sa~ei~~~l~~~~~~is~~TVYR~L~~L 55 (131)
T 2o03_A 26 FRSAQELHDELRRRGENIGLTTVYRTLQSM 55 (131)
T ss_dssp CEEHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHH
Confidence 334444444444333333333333333333
No 348
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=25.47 E-value=2.9e+02 Score=22.84 Aligned_cols=56 Identities=9% Similarity=0.022 Sum_probs=29.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHH
Q 011714 196 LLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK-VGRSNEAMELLNEA 251 (479)
Q Consensus 196 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~ 251 (479)
+....-+.++++++....+.+...+...+..--|.|--+|-. .|....+++++..+
T Consensus 10 ~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissi 66 (248)
T 3uzd_A 10 KARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSI 66 (248)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 344445566666666666666665555555555444444422 23334455555443
No 349
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.18 E-value=98 Score=22.42 Aligned_cols=31 Identities=13% Similarity=0.059 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 011714 103 TAVKFFSEASSYGLAPNSWTFSIMIRCYCNK 133 (479)
Q Consensus 103 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (479)
.|.++++.+.+.+...+..|....+..+...
T Consensus 28 sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 58 (131)
T 2o03_A 28 SAQELHDELRRRGENIGLTTVYRTLQSMASS 58 (131)
T ss_dssp EHHHHHHHHHHTTCCCCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 3344444444433333333333333333333
No 350
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=24.63 E-value=1.4e+02 Score=21.86 Aligned_cols=16 Identities=13% Similarity=0.165 Sum_probs=6.6
Q ss_pred ChhhHHHHHHHHHhCC
Q 011714 275 TPMKGVGLLKLMKKRN 290 (479)
Q Consensus 275 ~~~~a~~~~~~~~~~~ 290 (479)
.+-.|.++++.+.+.+
T Consensus 28 ~h~sa~eI~~~l~~~~ 43 (139)
T 3mwm_A 28 EFRSAQELHDMLKHKG 43 (139)
T ss_dssp SCEEHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhC
Confidence 3334444444444333
No 351
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.45 E-value=1.3e+02 Score=21.42 Aligned_cols=43 Identities=5% Similarity=-0.089 Sum_probs=27.2
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 107 FFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDN 149 (479)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (479)
+|+.+....+.|+....-.-+..+...+++..|.++...+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4555555555555444444445566778888888888777653
No 352
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=24.16 E-value=2.2e+02 Score=20.97 Aligned_cols=9 Identities=33% Similarity=0.593 Sum_probs=3.7
Q ss_pred HHhCCCCCC
Q 011714 466 ALKQGVIPQ 474 (479)
Q Consensus 466 ~~~~~~~p~ 474 (479)
+++.|..++
T Consensus 127 Ll~~ga~~~ 135 (165)
T 3twr_A 127 LLQHGADPT 135 (165)
T ss_dssp HHHTTCCTT
T ss_pred HHHcCCCCc
Confidence 334444443
No 353
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=23.99 E-value=1.4e+02 Score=23.73 Aligned_cols=189 Identities=11% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHH--HHHHHHH
Q 011714 89 NDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFT--ILVNSLC 166 (479)
Q Consensus 89 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~ 166 (479)
+..+...+..|+.+....+++.-...--.++..-.+.|..++.... .++++.+.+.|..++..... ..+...+
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGH-----TEIVEFLLQLGVPVNDKDDAGWSPLHIAA 81 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCc-----HHHHHHHHHhCCCCCCcCCCCCCHHHHHH
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCCHHHH
Q 011714 167 KSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYT--YTAVMDGFCKVGRSNEA 244 (479)
Q Consensus 167 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a 244 (479)
..|+.+-+..+++.-.... .++....+.+..+..... .++++.+.+.|..++... -...+...+..|+.+-+
T Consensus 82 ~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 155 (231)
T 3aji_A 82 SAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNR-----HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV 155 (231)
T ss_dssp HHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred HcCHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHH
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 011714 245 MELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPD 294 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 294 (479)
..+++.-...... +....+.+..+..... .++++.+.+.|..++
T Consensus 156 ~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~-----~~~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 156 HILLFYKASTNIQ-DTEGNTPLHLACDEER-----VEEAKFLVTQGASIY 199 (231)
T ss_dssp HHHHHTTCCSCCC-CTTSCCHHHHHHHTTC-----HHHHHHHHHTTCCSC
T ss_pred HHHHhcCCCcccc-CCCCCCHHHHHHHCCC-----HHHHHHHHHCCCCCC
No 354
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.86 E-value=4.5e+02 Score=24.60 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHH-HHHHHHHHccCCHHHHHHHHHHHHHC
Q 011714 190 IQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGL-KPDV--YTY-TAVMDGFCKVGRSNEAMELLNEAIER 254 (479)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~-~~li~~~~~~~~~~~a~~~~~~~~~~ 254 (479)
...+|.+++.|...+.++.|..+..+..--.. .++. ..| ..+.+.+.-.+++.+|.+.+..+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 46788888999999999999999887742110 1111 122 23455667788999999988887765
No 355
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.77 E-value=87 Score=23.02 Aligned_cols=31 Identities=13% Similarity=0.035 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 011714 103 TAVKFFSEASSYGLAPNSWTFSIMIRCYCNK 133 (479)
Q Consensus 103 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (479)
.|.++++.+.+.+...+..|....+..+...
T Consensus 31 sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~ 61 (139)
T 3mwm_A 31 SAQELHDMLKHKGDAVGLTTVYRTLQSLADA 61 (139)
T ss_dssp EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 3444444444433333333333333333333
No 356
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=22.76 E-value=1.2e+02 Score=17.58 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=8.8
Q ss_pred CHHHHHHHHHHHHhCC
Q 011714 420 KIDKALLLLFLMYEHA 435 (479)
Q Consensus 420 ~~~~a~~~~~~~~~~~ 435 (479)
|...|+++++++.+.|
T Consensus 8 Dv~RaiELle~lq~sg 23 (53)
T 1zl8_A 8 DVQRILELMEHVQKTG 23 (53)
T ss_dssp HHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3455556666655554
No 357
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=22.10 E-value=3.4e+02 Score=22.56 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=13.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHc
Q 011714 379 TLGKGKKTDEALIHLHHAIEM 399 (479)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~~ 399 (479)
.|--.++.++|..+.+++.+.
T Consensus 207 yYEiln~~~~Ac~lAk~Afd~ 227 (260)
T 2npm_A 207 HYEILNEPRAAIDMAKEAFEM 227 (260)
T ss_dssp HHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 445577788877776666543
No 358
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=21.44 E-value=1.5e+02 Score=23.58 Aligned_cols=46 Identities=9% Similarity=-0.040 Sum_probs=20.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHhcCChhhHHHHH
Q 011714 94 ALVMLNEQETAVKFFSEASSYGLAPNSW--TFSIMIRCYCNKNDFFEARKVI 143 (479)
Q Consensus 94 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~ 143 (479)
..++.|+.+....+++ .|..++.. .-...+...+..|+.+-+..++
T Consensus 15 ~A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 15 KATQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 3455666655444443 34333221 1123445556667665443333
No 359
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.11 E-value=2.5e+02 Score=22.12 Aligned_cols=19 Identities=11% Similarity=-0.038 Sum_probs=7.9
Q ss_pred HccCCHHHHHHHHHHHHHC
Q 011714 236 CKVGRSNEAMELLNEAIER 254 (479)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~ 254 (479)
+..|+.+-+..+++.+.+.
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~ 180 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSY 180 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHT
T ss_pred HHcCChHHHHHHHHHHHhc
Confidence 3344444444444444443
No 360
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=20.32 E-value=3.6e+02 Score=22.07 Aligned_cols=58 Identities=14% Similarity=0.062 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHH
Q 011714 195 CLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK-VGRSNEAMELLNEAI 252 (479)
Q Consensus 195 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~ 252 (479)
.+....-+.++++++.+..+.+.+.+...+..--|.|--+|-. .|....+++++..+.
T Consensus 13 ~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiissie 71 (236)
T 3iqu_A 13 QKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIE 71 (236)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 3445556667777777777776666666665555555444432 233445555555443
Done!