Query 011716
Match_columns 479
No_of_seqs 151 out of 1792
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 13:53:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011716.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011716hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 1E-30 3.5E-35 269.3 25.5 420 2-475 28-471 (491)
2 2xut_A Proton/peptide symporte 100.0 3.7E-30 1.3E-34 267.4 23.0 442 2-477 27-504 (524)
3 1pw4_A Glycerol-3-phosphate tr 100.0 1.4E-27 5E-32 242.6 22.9 374 8-475 48-433 (451)
4 3o7q_A L-fucose-proton symport 99.9 4.9E-26 1.7E-30 230.5 25.2 333 6-434 44-406 (438)
5 4gc0_A D-xylose-proton symport 99.9 2E-25 6.9E-30 229.6 20.1 401 21-477 53-464 (491)
6 2gfp_A EMRD, multidrug resista 99.9 7.5E-26 2.6E-30 224.6 12.5 324 12-432 24-349 (375)
7 2cfq_A Lactose permease; trans 99.9 4.8E-24 1.6E-28 215.1 7.5 370 5-477 25-401 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 1.5E-12 5.1E-17 131.6 11.3 161 3-181 268-432 (451)
9 3o7q_A L-fucose-proton symport 99.3 4.6E-11 1.6E-15 120.2 14.5 150 4-176 275-426 (438)
10 2cfq_A Lactose permease; trans 99.2 1.4E-11 4.9E-16 123.6 8.1 154 8-181 241-398 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.0 3.6E-10 1.2E-14 115.6 8.2 169 4-184 300-473 (491)
12 4gc0_A D-xylose-proton symport 98.9 2.6E-08 9E-13 101.6 16.2 161 10-185 299-465 (491)
13 2gfp_A EMRD, multidrug resista 98.6 2.6E-09 8.9E-14 105.1 -0.8 147 4-171 216-365 (375)
14 2xut_A Proton/peptide symporte 98.4 1.3E-06 4.3E-11 89.9 10.4 137 298-473 56-196 (524)
15 2g9p_A Antimicrobial peptide l 33.5 13 0.00045 19.3 0.7 14 42-56 2-15 (26)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=1e-30 Score=269.27 Aligned_cols=420 Identities=15% Similarity=0.227 Sum_probs=279.6
Q ss_pred ceeehhHHHHHHhhhh-----cCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhh
Q 011716 2 VFLSNAINFVAYFLKS-----MHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQ 76 (479)
Q Consensus 2 ~~y~~~~~~~~yl~~~-----l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~ 76 (479)
++|++.+.++.|++++ +|+++.+.+++.+.+.++..++++++|+++||++|||+++..+..+.+++.+++++++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~- 106 (491)
T 4aps_A 28 SYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPF- 106 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhh-
Confidence 4678889999999988 9999999999999999999999999999999933999999999999999999988875
Q ss_pred hcccccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHh
Q 011716 77 YSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIE 156 (479)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~ 156 (479)
+.+.+++.|+++|+|.+...|+..++++|++|+++++ |+.+++.++...++|..+||.+++++.
T Consensus 107 ---------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~l~ 170 (491)
T 4aps_A 107 ---------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR-RDAGFSIFVFGINLGAFIAPLIVGAAQ 170 (491)
T ss_dssp ---------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc-ceeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 5668889999999999999999999999999987643 677888889999999999999999999
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHhhcccceec---CCCCC-chhhHHHHHHH--------------HHhhccccccchh
Q 011716 157 ENRGWNCSFKISAVALGLALCIFTIGFPIYRYK---RPSGS-PITRIFKVIAS--------------AIRNRKASRSEMT 218 (479)
Q Consensus 157 ~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~--------------~~~~~~~~~~~~~ 218 (479)
++.|||+.|++.++..+++.+..+...++..++ ++++. +.++..+.... ....++.. .++.
T Consensus 171 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~-~~~~ 249 (491)
T 4aps_A 171 EAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNS-LPAY 249 (491)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCC-TTHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcc-cccc
Confidence 999999999998777666655554443332111 11111 11111110000 00000000 0000
Q ss_pred hhccCCCCCCCCCcchhhhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhh-cccCCCCcccC
Q 011716 219 EQIASPGATRSNDMFRVLDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGII-MNRTINNFKIP 297 (479)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 297 (479)
...... ...... ..+.+.. .+ .......+.++......++.....++..+.+..+.+..+... .+.+ ...
T Consensus 250 ~~~~~~-~~~~~~-~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 320 (491)
T 4aps_A 250 INLLTI-VAIAIP-VFYFAWM-IS--SVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFP 320 (491)
T ss_dssp HHHHHH-HHHHHH-HHHHHHH-C--------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSC
T ss_pred hhhhhH-HHHHHH-HHHHHHH-hh--cccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccC
Confidence 000000 000000 0000000 00 000011233344444555556666666666655544433211 1111 134
Q ss_pred cccccccccceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHH
Q 011716 298 TQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLV 377 (479)
Q Consensus 298 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 377 (479)
.+.....+.+..++..++.+++.||++||.. ...+++..+.++.++++..+...... ..++...+.++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 390 (491)
T 4aps_A 321 VSWFQSLNPLFIMLYTPFFAWLWTAWKKNQP------SSPTKFAVGLMFAGLSFLLMAIPGAL----YGTSGKVSPLWLV 390 (491)
T ss_dssp SGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHH----CCCCTTCCTHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHhccCC------CchHHHHHHHHHHHHHHHHHHHHHHh----cCCCCCccHHHHH
Confidence 5566666777778888888999888877632 34556778888888887777664321 0111124566777
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHH
Q 011716 378 WQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLF 457 (479)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (479)
+..++.+++++...+..++++.+..|+++||+++|+.++...+|+.+++.+.+.+.+ .+....
T Consensus 391 ~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-----------------~~~~~~ 453 (491)
T 4aps_A 391 GSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-----------------KSEVAY 453 (491)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-----------------SSTTHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------ccHHHH
Confidence 888999999999999999999999999999999999999999999999999877541 122345
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 011716 458 YALLCILNFINFLNYIYW 475 (479)
Q Consensus 458 f~~~~~~~l~~~~~~~~~ 475 (479)
|..++++++++.++.+.+
T Consensus 454 ~~~~~~~~~~~~~~~~~~ 471 (491)
T 4aps_A 454 FSYFGLGSVVLGIVLVFL 471 (491)
T ss_dssp HHHTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667777766665555444
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=3.7e-30 Score=267.43 Aligned_cols=442 Identities=19% Similarity=0.299 Sum_probs=274.3
Q ss_pred ceeehhHHHHHHhhhhcC------CChhhHHHHHHHHHHHHHHHhhhhHhhhcccc-chhHHHHHHHHHHHHHHHHHHHH
Q 011716 2 VFLSNAINFVAYFLKSMH------YPAAESAIMVNNFMGTSFLLTIFGGFISDSFL-TRFTTFILFCTIELLGLILLTIQ 74 (479)
Q Consensus 2 ~~y~~~~~~~~yl~~~l~------~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~-Grk~~~~~~~~~~~~~~~l~~~~ 74 (479)
++|++.+.++.|+++++| +++.+++++.+.+.++..++++++|+++|| + |||+++..+..+.+++.++++++
T Consensus 27 ~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~~~~~~~~~~~~~~~~~~~ 105 (524)
T 2xut_A 27 SFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNTILWLSLIYCVGHAFLAIF 105 (524)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHh
Confidence 467788999999999999 999999999999999999999999999999 8 99999999999999999988876
Q ss_pred hhhcccccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHH
Q 011716 75 AQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVW 154 (479)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~ 154 (479)
+. +.+.+++.|++.|++.+...|+..+++.|++|+++|+++...+++.+...++|.++||.++++
T Consensus 106 ~~---------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~ 170 (524)
T 2xut_A 106 EH---------------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPL 170 (524)
T ss_dssp SS---------------CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTH
T ss_pred cc---------------cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 30 455788899999999999999999999999999885444566677999999999999999999
Q ss_pred HhhccchhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhh---------ccCCC
Q 011716 155 IEENRGWNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQ---------IASPG 225 (479)
Q Consensus 155 l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 225 (479)
+.+..|||+.|++.++..+++.+..+...++.++++|++++..+..+......++++.+.++.... ....+
T Consensus 171 l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (524)
T 2xut_A 171 LLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALV 250 (524)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGG
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhc
Confidence 998899999999888776666555554444332222222211111111111111110000000000 00000
Q ss_pred -CC-----------------CCCCcchh--hhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhh
Q 011716 226 -AT-----------------RSNDMFRV--LDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGI 285 (479)
Q Consensus 226 -~~-----------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (479)
.+ ...+ .+| +|..+.. .+..+.++.++.......+.....++..+.+..+.+..+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (524)
T 2xut_A 251 NIPTLGIVAGLCCAMVLVMGFVGA-GASLQLERARKS--HPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAN 327 (524)
T ss_dssp GTTTTCSSHHHHHHHHHHHHHHHT-GGGTHHHHSCCS--CCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHH
T ss_pred ccchhhhhhhhhhhhhhhhccccc-chhhHHhhhhcc--ccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHH
Confidence 00 0000 111 1111000 11111233344444444444455555555555555555433
Q ss_pred hcccCCCCcccCcccccccccceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011716 286 IMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAA 365 (479)
Q Consensus 286 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~ 365 (479)
.++.+. + .+.+.....+.+..++..++.+++..+..+|.. .+.+..+++..|+++.+++++.+...+.. .
T Consensus 328 ~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~ 397 (524)
T 2xut_A 328 DMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMG---VKLTALRKMGAGIAITGLSWIVVGTIQLM----M 397 (524)
T ss_dssp HSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTT----T
T ss_pred hcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHHHHHHH----h
Confidence 333221 0 234555666666777777888877544334321 22345566777888877777666543210 0
Q ss_pred cCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccC
Q 011716 366 ENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLG 445 (479)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~ 445 (479)
+++...+.+++++.+++.+++++...+..++++.+.+|+++||+++|+.++...+|+.+++.+.+.+.+.... +|.+
T Consensus 398 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~---~~~~ 474 (524)
T 2xut_A 398 DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVT---EQIV 474 (524)
T ss_dssp TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHH---HHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccc---cccc
Confidence 0011235667778889999999999999999999999999999999999999999999999999876521100 1211
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011716 446 GNDLNHARLDLFYALLCILNFINFLNYIYWAK 477 (479)
Q Consensus 446 ~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~~~ 477 (479)
.... +.....|++++++++++.+.++.+.+
T Consensus 475 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 475 QTGM--SVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp HHHS--CHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cccc--cccccHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00123367777777777666655543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=1.4e-27 Score=242.55 Aligned_cols=374 Identities=9% Similarity=-0.037 Sum_probs=243.8
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHH----Hhhhcccccc
Q 011716 8 INFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTI----QAQYSRLQPA 83 (479)
Q Consensus 8 ~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~ 83 (479)
....+++.+++ .++.+.+++.+.+.++..++++++|+++|| +|||++++.+..+.+++.+++++ ++
T Consensus 48 ~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-------- 117 (451)
T 1pw4_A 48 ALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWATS-------- 117 (451)
T ss_dssp HHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCHHHHS--------
T ss_pred HHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhccc--------
Confidence 33444556678 999999999999999999999999999999 89999999999999999999998 65
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc-hh
Q 011716 84 MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG-WN 162 (479)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g-w~ 162 (479)
+.+.+++.|+++|++.+...|...+++.|.+|+++ |++++++.....++|.+++|.+++++.+..| ||
T Consensus 118 --------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~ 186 (451)
T 1pw4_A 118 --------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE---RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWH 186 (451)
T ss_dssp --------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH---HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCST
T ss_pred --------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 56688899999999999999999999999999888 9999999999999999999999999888888 99
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhccc
Q 011716 163 CSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFD 242 (479)
Q Consensus 163 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (479)
+.|++.++..++..+..+...|+.+++..+.+.. +.+...+++ .. .++.++ .
T Consensus 187 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~---~~---~~~~~~-~--------- 238 (451)
T 1pw4_A 187 AALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE------------EYKNDYPDD---YN---EKAEQE-L--------- 238 (451)
T ss_dssp TCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT------------TTCCC-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChh------------hhccccccc---ch---hhhhcc-c---------
Confidence 9999888776655555444444422221110000 000000000 00 000000 0
Q ss_pred CCCcchhhhhhhhhhh---hhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchh
Q 011716 243 DTITAAQVEETKTFLG---LLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERS 319 (479)
Q Consensus 243 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 319 (479)
+.++. ..+..++ .....+........+.....++..+ +....+......+.......+..++..++.+++
T Consensus 239 ---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 311 (451)
T 1pw4_A 239 ---TAKQI-FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTY---LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 311 (451)
T ss_dssp ---CCTHH-HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH---BTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccccc-hHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0011111 1111122222222221111222211 111111001122344445556667777788888
Q ss_pred hhhh--HhhhhccCCCCCchhHHHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 011716 320 VHIF--ERKISAKYNIFRPLKRIGLGLALAS-GSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLE 396 (479)
Q Consensus 320 ~~~~--~~r~~~~~~~~~~~~~i~~g~~l~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 396 (479)
.||+ ++|.. +..+.++.. ++++.+.... ..+.+......++.+++.....+..+.
T Consensus 312 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~~~~~~~~ 369 (451)
T 1pw4_A 312 SDKVFRGNRGA-----------TGVFFMTLVTIATIVYWMNP-----------AGNPTVDMICMIVIGFLIYGPVMLIGL 369 (451)
T ss_dssp HHHTSTTCHHH-----------HHHHHHHHHHHHHHHTTSCC-----------TTCHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHhcCCchh-----------HHHHHHHHHHHHHHHHHHhc-----------ccCHHHHHHHHHHHHHHHhchHHHHHH
Confidence 8776 55432 444444433 4444443311 124555666777888888888888899
Q ss_pred hhcccCCcchHHHHHHHHHHHHhh-hHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 011716 397 FFYSEAPHSMRSISTALSWCSTSM-GYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYW 475 (479)
Q Consensus 397 ~~~~~~P~~~rg~~~g~~~~~~~l-g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~ 475 (479)
+..+..|++.||++.|+.+....+ |..+++.+.+.+.+. .++...|++++++.+++.+..+..
T Consensus 370 ~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 370 HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF----------------FGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----------------SCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------cCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 999999999886521 123556777777777666555443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.95 E-value=4.9e-26 Score=230.47 Aligned_cols=333 Identities=11% Similarity=0.039 Sum_probs=223.0
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHH---HHHhhhccccc
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILL---TIQAQYSRLQP 82 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~---~~~~~~~~~~~ 82 (479)
....+.+++.+++|+++.+.+++.+.+.++..++.++.|+++|| +|||++++.+..+.+++.+++ +.++
T Consensus 44 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~------- 115 (438)
T 3o7q_A 44 LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALGAALFWPAAEIM------- 115 (438)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHHTT-------
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHHHHHHHHHHHhccccc-------
Confidence 34445556788999999999999999999999999999999999 899999999999999999988 5554
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHh-hccc-
Q 011716 83 AMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIE-ENRG- 160 (479)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~-~~~g- 160 (479)
+.+.+++.|++.|++.+...+..+++++|++|+++ |++.+++.....++|.+++|.+++++. +..+
T Consensus 116 ---------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 183 (438)
T 3o7q_A 116 ---------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT---HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCC
T ss_pred ---------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 77789999999999999999999999999999988 999999999999999999999999998 5444
Q ss_pred ------------------------hhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccc
Q 011716 161 ------------------------WNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSE 216 (479)
Q Consensus 161 ------------------------w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (479)
||+.|++.+....+..+..+..+. ++.++++++ +.+..+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~---------------~~~~~~ 246 (438)
T 3o7q_A 184 QSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--PALQSDNHS---------------DAKQGS 246 (438)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCTTTCCC---------------CSSTTS
T ss_pred ccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--Ccccccccc---------------cccccc
Confidence 999998766554444433333211 111111000 000000
Q ss_pred hhhhccCCCCCCCCCcchhhhhhcccCCCcchhhhhhhhhhhhh-hHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcc
Q 011716 217 MTEQIASPGATRSNDMFRVLDKALFDDTITAAQVEETKTFLGLL-PIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFK 295 (479)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (479)
.. .++.+. -..+...... ..+...........+.+.++.++..+.+ .
T Consensus 247 -------------~~-~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~ 294 (438)
T 3o7q_A 247 -------------FS-ASLSRL------------ARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMT------A 294 (438)
T ss_dssp -------------HH-HHHHHH------------TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC------H
T ss_pred -------------hh-hhHHHH------------HhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcc------h
Confidence 00 000000 0001111111 1111111111111111112021211111 1
Q ss_pred cCcccccccccceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHH
Q 011716 296 IPTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFW 375 (479)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (479)
...+.......+..++..++.+++.||+++|.. +..+.++..++.+..... +..+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-----------~~~~~~~~~~~~~~~~~~--------------~~~~ 349 (438)
T 3o7q_A 295 GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV-----------LAAYALIAMALCLISAFA--------------GGHV 349 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH-----------HHHHHHHHHHHHHHHHHC--------------CHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-----------HHHHHHHHHHHHHHHHHc--------------CCcH
Confidence 123344444456666777888888888877643 566666666665555442 1223
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhc
Q 011716 376 LVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNL 434 (479)
Q Consensus 376 l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~ 434 (479)
.+..+++.+++.+...|..+.+..+..|++ ++++.+... ...+|+.+++.+.+.+.+
T Consensus 350 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~ 406 (438)
T 3o7q_A 350 GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD 406 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH
Confidence 344557888888889999999999999977 999998877 677999999999988763
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.93 E-value=2e-25 Score=229.57 Aligned_cols=401 Identities=13% Similarity=0.045 Sum_probs=220.6
Q ss_pred ChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccC--CCCCchhHHHHHH
Q 011716 21 PAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMN--RRPSHTQAAILYT 98 (479)
Q Consensus 21 ~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~l~~ 98 (479)
++.+.|++.+++.++..++++++|+++|| +|||++++++..++.+++++++++........... ......+...+++
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~ 131 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVI 131 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHH
Confidence 34667899999999999999999999999 89999999999999999999986421000000000 0001127789999
Q ss_pred HHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhc--------cchhhHHHHHHH
Q 011716 99 GLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEEN--------RGWNCSFKISAV 170 (479)
Q Consensus 99 ~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~--------~gw~~~f~i~~~ 170 (479)
+|+++|+|.|+..+..+.+++|..|+++ |++..+.......+|.++++.++..+... .+||..+.+..+
T Consensus 132 ~R~l~G~g~G~~~~~~~~~i~E~~p~~~---rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (491)
T 4gc0_A 132 YRIIGGIGVGLASMLSPMYIAELAPAHI---RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECI 208 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCGGG---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHh---hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhh
Confidence 9999999999999999999999999988 89989998889999999998887776532 346666665554
Q ss_pred HHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCcchhh
Q 011716 171 ALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTITAAQV 250 (479)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (479)
..++.++. ....|+.|+--..+.+.++..+.......+........ +. ....+. .++.
T Consensus 209 ~~~~~~~~-~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~--~~-----------~~~~~~--------~~~~ 266 (491)
T 4gc0_A 209 PALLFLML-LYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQ--EI-----------KHSLDH--------GRKT 266 (491)
T ss_dssp HHHHHHHH-GGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH--HH-----------HHHHHH--------HHHH
T ss_pred hhhhhhhh-hhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHH--HH-----------HHHHHh--------hhhh
Confidence 43333322 22333322210001111111111111100000000000 00 000000 0000
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhHhhhhcc
Q 011716 251 EETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISAK 330 (479)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~ 330 (479)
................................+........+..............+..++...+..++.||++||..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~-- 344 (491)
T 4gc0_A 267 GGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL-- 344 (491)
T ss_dssp TTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHH--
T ss_pred hhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcch--
Confidence 000000010111111111111100000001111101111111001111222333345556667777888888888754
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHH-HHHHHHHHHhhhhhhhhhcccCCcchHHH
Q 011716 331 YNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQY-LLLGVSDMLTLGGMLEFFYSEAPHSMRSI 409 (479)
Q Consensus 331 ~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~P~~~rg~ 409 (479)
...+.....+++..++..... ..+.+..+... +..........|..+.+..|.+|.+.|++
T Consensus 345 ---------~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~ 406 (491)
T 4gc0_A 345 ---------QIIGALGMAIGMFSLGTAFYT---------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGK 406 (491)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHT---------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHH
T ss_pred ---------hccchHHHHHHHHHHHHHHhc---------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHH
Confidence 555666666665555443221 11222222222 22223333445777889999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011716 410 STALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYWAK 477 (479)
Q Consensus 410 ~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~~~ 477 (479)
++|+.+..+.+++.+++.+.+.+.... |.. ...+....|++++++++++.++.+++.+
T Consensus 407 ~~g~~~~~~~~~~~i~~~~~p~l~~~~------~~~----~~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 407 ALAIAVAAQWLANYFVSWTFPMMDKNS------WLV----AHFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHCHHH------HHH----HHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH----hhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 999999999999999998887753211 000 0112334577888888877776655544
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.93 E-value=7.5e-26 Score=224.64 Aligned_cols=324 Identities=11% Similarity=0.071 Sum_probs=215.6
Q ss_pred HHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCch
Q 011716 12 AYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHT 91 (479)
Q Consensus 12 ~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (479)
+.+.+++|.++.+.+++.+.+.++..+++++.|+++|| +|||+++..+..+..++..+++.++
T Consensus 24 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~---------------- 86 (375)
T 2gfp_A 24 ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLVAVTTS---------------- 86 (375)
T ss_dssp HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHhc----------------
Confidence 33567899999999999999999999999999999999 8999999999999999999998886
Q ss_pred hHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHHHH
Q 011716 92 QAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVA 171 (479)
Q Consensus 92 ~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~~ 171 (479)
+.+.+++.|++.|++.+...+...+++.|.+|+++ |++.++......++|..++|.+++++.+++|||+.|++.++.
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ---LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS---CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 77789999999999999999999999999999888 999999999999999999999999999888999999987766
Q ss_pred HHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCcchhhh
Q 011716 172 LGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTITAAQVE 251 (479)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (479)
.++..+......|+ +++++++ +++ . .+ ++ ++.-
T Consensus 164 ~~~~~~~~~~~~~~---~~~~~~~-------------~~~---~-------------~~---~~------------~~~~ 196 (375)
T 2gfp_A 164 CAGVTFSMARWMPE---TRPVDAP-------------RTR---L-------------LT---SY------------KTLF 196 (375)
T ss_dssp HHHHHCCCCCSSCC---CSTTTCC-------------CCC---T-------------TT---CS------------THHH
T ss_pred HHHHHHHHHHHCcc---cCCCCcc-------------ccc---H-------------HH---HH------------HHHh
Confidence 55444322222222 1111000 000 0 00 00 0001
Q ss_pred hhhhhhhhh-hHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhHhhhhcc
Q 011716 252 ETKTFLGLL-PIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISAK 330 (479)
Q Consensus 252 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~ 330 (479)
..+...... ................+ .+.++..+.+.. ..+.......+..++..++.+++.||.+++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~------~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~---- 265 (375)
T 2gfp_A 197 GNSGFNCYLLMLIGGLAGIAAFEACSG-VLMGAVLGLSSM------TVSILFILPIPAAFFGAWFAGRPNKRFSTL---- 265 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCS-CSSHHHHHHHHH------HHHHHHHTHHHHHHHHHHHHHTTTTHHHHH----
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 111111111 11111111111111111 222221122211 223334444455555556666665554432
Q ss_pred CCCCCchhHHHHHHHH-HHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchHHH
Q 011716 331 YNIFRPLKRIGLGLAL-ASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSI 409 (479)
Q Consensus 331 ~~~~~~~~~i~~g~~l-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~ 409 (479)
...+..+ ...+.......... ..+.+......++.+++.+...+....+..|..| ++||+
T Consensus 266 ---------~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~ 326 (375)
T 2gfp_A 266 ---------MWQSVICCLLAGLLMWIPDWFG---------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGT 326 (375)
T ss_dssp ---------HHHHHHHHHHTSSSSSHHHHHH---------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHhhhc---------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccch
Confidence 3333333 22222211111100 1144556667788899999999999999999999 88999
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhh
Q 011716 410 STALSWCSTSMGYFLSSALVSIT 432 (479)
Q Consensus 410 ~~g~~~~~~~lg~~~~~~l~~~i 432 (479)
+.|+.+....+|..+++.+.+.+
T Consensus 327 ~~g~~~~~~~~g~~~~~~~~g~l 349 (375)
T 2gfp_A 327 AGALVGGLQNIGSGVLASLSAML 349 (375)
T ss_dssp HHHHHHHHHHHHHHCCSTTCTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888887665
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.89 E-value=4.8e-24 Score=215.11 Aligned_cols=370 Identities=11% Similarity=0.009 Sum_probs=211.0
Q ss_pred ehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHH---HHHhhhcccc
Q 011716 5 SNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILL---TIQAQYSRLQ 81 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~---~~~~~~~~~~ 81 (479)
...++++.|+++++|+++.++|++.+.+.++..++++++|+++|| +||||+++.+..+..++.... ....
T Consensus 25 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~------ 97 (417)
T 2cfq_A 25 AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVMFAPFFIFIFGP------ 97 (417)
T ss_dssp HHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTSCHHHHHHHTHHH------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 345789999998999999999999999999999999999999999 899999999888776533211 2221
Q ss_pred cccCCCCCchhH-HHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc
Q 011716 82 PAMNRRPSHTQA-AILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG 160 (479)
Q Consensus 82 ~~~~~~~~~~~~-~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g 160 (479)
.. ..+..++.+.+++.+...+...+...+..++.. ++++..++......++|..++|.+++++.+ .+
T Consensus 98 ----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~ 165 (417)
T 2cfq_A 98 ----------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS-RRSNFEFGRARMFGCVGWALGASIVGIMFT-IN 165 (417)
T ss_dssp ----------HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH-HHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HC
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh-hhcccchHHHHHHHHHHHHHHHHHHHHHHH-hc
Confidence 00 012334555555555555555555555443322 225656666666788999999999999987 68
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhc
Q 011716 161 WNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKAL 240 (479)
Q Consensus 161 w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (479)
|+..|++.++..++..+. ....++ + +++..+. ++++ +.. .+..+..++.+
T Consensus 166 ~~~~f~~~~~~~~~~~~~-~~~~~~--~-~~~~~~~-----------~~~~-~~~-----------~~~~~~~~~~~--- 215 (417)
T 2cfq_A 166 NQFVFWLGSGCALILAVL-LFFAKT--D-APSSATV-----------ANAV-GAN-----------HSAFSLKLALE--- 215 (417)
T ss_dssp SHHHHTTTTTTTTTHHHH-SCSSCC--C-CSCSSCS-----------SSSS-SSC-----------CCCCCHHHHHH---
T ss_pred hhHHHHHHHHHHHHHHHH-HHHcCc--c-ccccccc-----------cccc-ccc-----------cccccHHHHHH---
Confidence 999998765553333222 111111 1 1100000 0000 000 00000000000
Q ss_pred ccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhh-hcccchhhhhhhhcccCCCCcc-cCcccccccccceeehhhhccch
Q 011716 241 FDDTITAAQVEETKTFLGLLPIFASTIMMNCCL-AQLQTFSVQQGIIMNRTINNFK-IPTQSLTVFPLTIMLASIPLYER 318 (479)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~ 318 (479)
.-..++..............+..+ .+.+.++..+ .+.. +.+ ...+....++.+..++...+.++
T Consensus 216 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~g~ 281 (417)
T 2cfq_A 216 ---------LFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF---FATG--EQGTRVFGYVTTMGELLNASIMFFAPL 281 (417)
T ss_dssp ---------HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---SSSH--HHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhcc--CCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011111111111111111111 1111111111 1100 000 01123333344455566777888
Q ss_pred hhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011716 319 SVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFF 398 (479)
Q Consensus 319 l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 398 (479)
+.||+++|.. +..+.++.++++...... .+.+.++...++.+++.....+..+.+.
T Consensus 282 l~dr~g~~~~-----------l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 282 IINRIGGKNA-----------LLLAGTIMSVRIIGSSFA-------------TSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp HHHHHCHHHH-----------HHHHHHHHHHHHHHHTTC-------------CSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcHHHH-----------HHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877743 555666666555444321 2334455555666777766777778899
Q ss_pred cccCCcchHHHHHHH-HHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011716 399 YSEAPHSMRSISTAL-SWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYWAK 477 (479)
Q Consensus 399 ~~~~P~~~rg~~~g~-~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~~~ 477 (479)
.|..|++.||++.+. ++....+|+.++|.+.|.+.+ ..++...|.+++++.+++.+.++.+.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~----------------~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE----------------SIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH----------------HSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH----------------hcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999998 488888999999999987541 223455677888887777766555443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.37 E-value=1.5e-12 Score=131.56 Aligned_cols=161 Identities=11% Similarity=0.100 Sum_probs=135.1
Q ss_pred eeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhcccc--chhHHHHHHHHHHH-HHHHHHHHHhhhcc
Q 011716 3 FLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFL--TRFTTFILFCTIEL-LGLILLTIQAQYSR 79 (479)
Q Consensus 3 ~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~--Grk~~~~~~~~~~~-~~~~l~~~~~~~~~ 79 (479)
++++..+++.|+++.+|+++.+++++.+.+.++..++.++.|+++|| + |||+.+..+..+.. ++.++..+..
T Consensus 268 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 342 (451)
T 1pw4_A 268 RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWMNP---- 342 (451)
T ss_dssp HHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHHHhc----
Confidence 45677888999998899999999999999999999999999999999 8 99999888777766 5555544331
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhh-hHHHHHHHHHHHhhc
Q 011716 80 LQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCA-GGLVAATVMVWIEEN 158 (479)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-g~~ig~~~~~~l~~~ 158 (479)
..+...+.+..++.|++.+...+...+++.|.+|+++ |+++.++.....++ |..++|.+.|++.++
T Consensus 343 ----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 409 (451)
T 1pw4_A 343 ----------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA---AGTAAGFTGLFGYLGGSVAASAIVGYTVDF 409 (451)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ----------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1144566677788899889999999999999999888 99999999999999 999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHh
Q 011716 159 RGWNCSFKISAVALGLALCIFTI 181 (479)
Q Consensus 159 ~gw~~~f~i~~~~~~~~~~~~~~ 181 (479)
.||+..|++.+++.+++.+..+.
T Consensus 410 ~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 410 FGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888776666555444
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.26 E-value=4.6e-11 Score=120.17 Aligned_cols=150 Identities=11% Similarity=0.101 Sum_probs=122.3
Q ss_pred eehhHHHHHH-hhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011716 4 LSNAINFVAY-FLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQP 82 (479)
Q Consensus 4 y~~~~~~~~y-l~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (479)
+++...++.| +++.+|.++.++++..+.+.++..++.+++|+++|| +|||+++..+..+..++.++....+
T Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~------- 346 (438)
T 3o7q_A 275 TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAFAG------- 346 (438)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHcC-------
Confidence 4556788999 888889999999999999999999999999999999 8999999999988888887776663
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc-h
Q 011716 83 AMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG-W 161 (479)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g-w 161 (479)
+... .+..++.+++.+...|...++..|.+|++ ++.+.++.. ...+|..++|.+.|++.+..| +
T Consensus 347 ---------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~ 411 (438)
T 3o7q_A 347 ---------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD----TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNI 411 (438)
T ss_dssp ---------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG----HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSS
T ss_pred ---------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc----ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcch
Confidence 3323 33457888999999999999999998854 344444444 567999999999999999988 9
Q ss_pred hhHHHHHHHHHHHHH
Q 011716 162 NCSFKISAVALGLAL 176 (479)
Q Consensus 162 ~~~f~i~~~~~~~~~ 176 (479)
+..|++.+++.++.+
T Consensus 412 ~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 412 PTAELIPALCFAVIF 426 (438)
T ss_dssp GGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999997665544443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.21 E-value=1.4e-11 Score=123.61 Aligned_cols=154 Identities=10% Similarity=-0.017 Sum_probs=117.1
Q ss_pred HHHHHHhhhhcCC---ChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 011716 8 INFVAYFLKSMHY---PAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAM 84 (479)
Q Consensus 8 ~~~~~yl~~~l~~---~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (479)
..++.|+.+.++. +..+.+...+...++..++.++.|+++|| +|||+++..+..+.+++..+.++.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~~--------- 310 (417)
T 2cfq_A 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFAT--------- 310 (417)
T ss_dssp HHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTTCC---------
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 4567787766653 23455677777777888899999999999 8999999988888777766655442
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhH-HHHHHhhhHHHHHHHHHHHhhccchhh
Q 011716 85 NRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNW-FFFSLCAGGLVAATVMVWIEENRGWNC 163 (479)
Q Consensus 85 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~ig~~ig~~~~~~l~~~~gw~~ 163 (479)
+...+.+...+.+++.+...+...++..|.+|++. |++..+. +.....+|.+++|.++|++.++.|++.
T Consensus 311 -------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~---~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~ 380 (417)
T 2cfq_A 311 -------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF---SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQG 380 (417)
T ss_dssp -------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH---HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHH
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHH
Confidence 34455566667777777667777889999999877 8888777 466778999999999999998889998
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 011716 164 SFKISAVALGLALCIFTI 181 (479)
Q Consensus 164 ~f~i~~~~~~~~~~~~~~ 181 (479)
.|.+.++..+++.+..+.
T Consensus 381 ~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 381 AYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 998877776666555443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.02 E-value=3.6e-10 Score=115.57 Aligned_cols=169 Identities=8% Similarity=-0.000 Sum_probs=126.5
Q ss_pred eehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHH-----HHHHHHHHHHHHHHHHhhhc
Q 011716 4 LSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFI-----LFCTIELLGLILLTIQAQYS 78 (479)
Q Consensus 4 y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~-----~~~~~~~~~~~l~~~~~~~~ 78 (479)
+.....++.|+++.++.+..+.++..+...+...++.++.|++.|| +|||+... .+..+.+++..+........
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (491)
T 4aps_A 300 EQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALY 378 (491)
T ss_dssp GGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHHHHHHHHTTTHHHHHHC
T ss_pred hhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677888888889888888999999999999999999999999 79987655 66666666666655542110
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhc
Q 011716 79 RLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEEN 158 (479)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~ 158 (479)
. .+...+...+.+..++.|++.+...|...+++.|.+|++. |+.+.++.....++|..+++.+.+++.+
T Consensus 379 ~-------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~---~g~~~g~~~~~~~~g~~i~~~~~~~~~~- 447 (491)
T 4aps_A 379 G-------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF---NSQMMSMWFLSSSVGSALNAQLVTLYNA- 447 (491)
T ss_dssp C-------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC---SSSSTHHHHHHHHHHHHHHHHHGGGGGG-
T ss_pred C-------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 0 0111144566677888999999999999999999999988 9999999999999999999999988875
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhcc
Q 011716 159 RGWNCSFKISAVALGLALCIFTIGFP 184 (479)
Q Consensus 159 ~gw~~~f~i~~~~~~~~~~~~~~~~~ 184 (479)
.++...|.+.+...+++.+..+...+
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 448 KSEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp SSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777766665555555554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.89 E-value=2.6e-08 Score=101.56 Aligned_cols=161 Identities=10% Similarity=-0.034 Sum_probs=114.1
Q ss_pred HHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCC
Q 011716 10 FVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPS 89 (479)
Q Consensus 10 ~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 89 (479)
..+++.+..+.+..+.........+...++.++++++.|| +|||+.++.+.....++.+..+..... ..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~~~~l~~~~~~----------~~ 367 (491)
T 4gc0_A 299 YAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYT----------QA 367 (491)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHHHHHHHHHHHT----------TC
T ss_pred cchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHHHHHHHHHHhc----------cc
Confidence 3445556788888888887778888899999999999999 899999999988888877766554311 11
Q ss_pred chhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh------ccchhh
Q 011716 90 HTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE------NRGWNC 163 (479)
Q Consensus 90 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~------~~gw~~ 163 (479)
...........+..+.+ .+..|....+.+|.+|.+. |+++.++......+|..+++.+.+.+.+ ..++..
T Consensus 368 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~---R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~ 443 (491)
T 4gc0_A 368 PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI---RGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGF 443 (491)
T ss_dssp CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT---HHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCH
T ss_pred chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 11121222222222222 2334677889999999988 9999999888889999988888766643 235566
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 011716 164 SFKISAVALGLALCIFTIGFPI 185 (479)
Q Consensus 164 ~f~i~~~~~~~~~~~~~~~~~~ 185 (479)
.|++.+++.+++.+..++..||
T Consensus 444 ~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 444 SYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHheecC
Confidence 7887777777776666666664
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.64 E-value=2.6e-09 Score=105.08 Aligned_cols=147 Identities=9% Similarity=-0.032 Sum_probs=111.9
Q ss_pred eehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHH-HHHHHH--HHHHHhhhccc
Q 011716 4 LSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTI-ELLGLI--LLTIQAQYSRL 80 (479)
Q Consensus 4 y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~-~~~~~~--l~~~~~~~~~~ 80 (479)
++....++.|+++++|.++.+.+.+.+...++..++.++.|+++|| +||+. ..+..+ ...+.. ......
T Consensus 216 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~~--~~~~~~~~~~~~~~~~~~~~~----- 287 (375)
T 2gfp_A 216 AAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTLM--WQSVICCLLAGLLMWIPDWFG----- 287 (375)
T ss_dssp HHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHHH--HHHHHHHHHTSSSSSHHHHHH-----
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHhhhc-----
Confidence 3445566677777799999999999999999999999999999999 78832 223322 222222 222210
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc
Q 011716 81 QPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG 160 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g 160 (479)
..+.+.+.+..++.|++.+...|...++..|..| ++ |+++.+......++|..++|.+.+.+.+..+
T Consensus 288 ---------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~---~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 288 ---------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL---AGTAGALVGGLQNIGSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH---HHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred ---------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc---cchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 0144556677788999999999999999999987 66 8999999999999999999999999988778
Q ss_pred hhhHHHHHHHH
Q 011716 161 WNCSFKISAVA 171 (479)
Q Consensus 161 w~~~f~i~~~~ 171 (479)
|+..+.+.+..
T Consensus 355 ~~~~~~~~~~~ 365 (375)
T 2gfp_A 355 GSLGLLMTLMG 365 (375)
T ss_dssp HHHHHHHHHHH
T ss_pred ccHHHHHHHHH
Confidence 88777764433
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.35 E-value=1.3e-06 Score=89.89 Aligned_cols=137 Identities=12% Similarity=0.020 Sum_probs=101.8
Q ss_pred cccccccccceeehhhhccchhhhhh-HhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHH
Q 011716 298 TQSLTVFPLTIMLASIPLYERSVHIF-ERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWL 376 (479)
Q Consensus 298 ~~~~~~~~~~~~~~~~~l~~~l~~~~-~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 376 (479)
.++......+...+..++.+++.||+ ++|.. +..+.++..++.+..... ..+.+.+
T Consensus 56 ~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~-----------~~~~~~~~~~~~~~~~~~------------~~~~~~~ 112 (524)
T 2xut_A 56 AKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT-----------ILWLSLIYCVGHAFLAIF------------EHSVQGF 112 (524)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH-----------HHHHHHHHHHHHHHHHHT------------SSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-----------HHHHHHHHHHHHHHHHHh------------cccHHHH
Confidence 34555555667778888899999998 77754 677777777777666652 1145667
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHH---HHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhh
Q 011716 377 VWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTAL---SWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHAR 453 (479)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~---~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 453 (479)
+...++.|++.+...+...+++.+.+|++.|++..+. .+....+|..+++.+.+.+.. ..+
T Consensus 113 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~----------------~~g 176 (524)
T 2xut_A 113 YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK----------------NFG 176 (524)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH----------------TSC
T ss_pred HHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------ccc
Confidence 7778999999999999999999999999999877666 888888999999988876541 123
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 011716 454 LDLFYALLCILNFINFLNYI 473 (479)
Q Consensus 454 ~~~~f~~~~~~~l~~~~~~~ 473 (479)
++..|++.+++.+++.+.+.
T Consensus 177 ~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 177 AAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56667777777666555443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=33.46 E-value=13 Score=19.33 Aligned_cols=14 Identities=14% Similarity=0.097 Sum_probs=10.9
Q ss_pred hhHhhhccccchhHH
Q 011716 42 FGGFISDSFLTRFTT 56 (479)
Q Consensus 42 ~~G~laDr~~Grk~~ 56 (479)
+.|.+..+ ||||.+
T Consensus 2 lfgklikk-fgrkai 15 (26)
T 2g9p_A 2 LFGKLIKK-FGRKAI 15 (26)
T ss_dssp HHHHHHHH-HTSHHH
T ss_pred cHHHHHHH-HhHHHH
Confidence 35888899 899864
Done!