BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011717
(479 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
HAIKG+ + + + Q+ L+G NGAGKTTT+S + G+ G
Sbjct: 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG 61
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 429 QKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL-TGITPVTG 475
++ +KG+ I + ++F L+GPNGAGKTTT+ + T I P +G
Sbjct: 23 KRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 70
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
HA+KG+ +NI + ++ +LG NG GK+T GI + G
Sbjct: 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG 63
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
+++G+ I + ++ LLGP+G+GKTT + + G+ T GD
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGD 71
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
A+K L + I + LLGP+G GKTTT+ + G+ T G
Sbjct: 21 AVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRG 61
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 422 IGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI-TPVTG 475
+ K K A+ + +NI + F +LGP+GAGKTT + + G+ P TG
Sbjct: 6 VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTG 60
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 422 IGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI-TPVTG 475
+ K K A+ + +NI + F +LGP+GAGKTT + + G+ P TG
Sbjct: 6 VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTG 60
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
A+ G+ + + LLGP+G GKTTT+ L GI T G+
Sbjct: 18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
+ A+ G+ +++ K + ++GPNG+GK+T I+ +TG G
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEG 62
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
+ A+ G+ +++ K + ++GPNG+GK+T I+ +TG G
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEG 62
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
+ A+ G+ +++ K + ++GPNG+GK+T I+ +TG G
Sbjct: 20 FKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEG 62
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
I + ++IA ++ ++GPNGAGK+T + LTG + G+
Sbjct: 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGE 67
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
+ A+ L + I + LLGP+G GKTTT+ + G+ T G
Sbjct: 25 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG 67
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
+ A+ L + I + LLGP+G GKTTT+ + G+ T G
Sbjct: 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG 66
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 451 CLLGPNGAGKTTTISCLTGITPVTG 475
+LGPNG+GKTT + ++G+ P +G
Sbjct: 34 IILGPNGSGKTTLLRAISGLLPYSG 58
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 24/32 (75%)
Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468
+KG+ V+I + ++ ++GP+G+GK+T + CL
Sbjct: 19 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLN 50
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 24/32 (75%)
Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468
+KG+ V+I + ++ ++GP+G+GK+T + CL
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLN 71
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGG 476
++GL +++ ++ ++GPNG+GK+T + L G VTGG
Sbjct: 17 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG 58
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGG 476
++GL +++ ++ ++GPNG+GK+T + L G VTGG
Sbjct: 36 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG 77
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 428 CQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
+K + A+ + + I + LLGP+G+GK+T + + GI T G
Sbjct: 10 VKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSG 58
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
A++ + + + + LLGP+G GKTTT+ + G+ + G
Sbjct: 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRG 58
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469
+KG+ + + K ++ L+GPNGAGK+T L G
Sbjct: 19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51
>pdb|3MVC|A Chain A, High Resolution Crystal Structure Of The Heme Domain Of
Glb-6 From C. Elegans
pdb|3MVC|B Chain B, High Resolution Crystal Structure Of The Heme Domain Of
Glb-6 From C. Elegans
Length = 161
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 10 PSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNAT-----TISYGIQTNSTPIEMRG 63
PS+ V R A E W N CP H +D+ AT T+ +G + + T RG
Sbjct: 78 PSATVAGLREAGEKHVWPTRNQYGCPFHAHLLDQFATAMIERTLEWGEKKDRTETTQRG 136
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
I K ++ ++GPNG GKTT + L G+ T G
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEG 341
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
K + ++I + + +GP+G GK+T + + G+ +T GD
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
K + ++I + + +GP+G GK+T + + G+ +T GD
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
K + ++I + + +GP+G GK+T + + G+ +T GD
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
IAK + L G NGAGKTT ++ L P T G
Sbjct: 43 QIAKGDKWILYGLNGAGKTTLLNILNAYEPATSG 76
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
++GL + ++ L+GPNG+GK+T + L + TGG
Sbjct: 33 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 73
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
I K ++ ++GPNG GKTT + L G+ T G
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 411
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 444 IAKDQLFC-LLGPNGAGKTTTISCLTG 469
I KD + ++GPNG GKTT + L G
Sbjct: 113 IVKDGMVVGIVGPNGTGKTTAVKILAG 139
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
I K ++ ++GPNG GKTT + L G+ T G
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 397
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 444 IAKDQLFC-LLGPNGAGKTTTISCLTG 469
I KD + ++GPNG GKTT + L G
Sbjct: 99 IVKDGMVVGIVGPNGTGKTTAVKILAG 125
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
+KGL ++ Q L+GP+G GK+T ++ L GG+
Sbjct: 1095 LKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGE 1135
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 450 FCLLGPNGAGKTTTISCLTG-ITPVTG 475
++GPNGAGK+T I+ LTG + P +G
Sbjct: 702 IAVIGPNGAGKSTLINVLTGELLPTSG 728
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 450 FCLLGPNGAGKTTTISCLTG-ITPVTG 475
++GPNGAGK+T I+ LTG + P +G
Sbjct: 696 IAVIGPNGAGKSTLINVLTGELLPTSG 722
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 450 FCLLGPNGAGKTTTISCLTG-ITPVTG 475
++GPNGAGK+T I+ LTG + P +G
Sbjct: 702 IAVIGPNGAGKSTLINVLTGELLPTSG 728
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
++GL + ++ L+GPNG+GK+T + L + TGG
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG 74
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
++GL + ++ L+GPNG+GK+T + L + TGG
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG 74
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
++GL + ++ L+GPNG+GK+T + L + TGG
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG 74
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 448 QLFCLLGPNGAGKTTTISCLTGITPVTG 475
++ L+GPNGAGK+T ++ + G+T G
Sbjct: 27 EILHLVGPNGAGKSTLLARMAGMTSGKG 54
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
+A+K + +NI + + ++GP+G+GK+T ++ + + T G+
Sbjct: 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 448 QLFCLLGPNGAGKTTTISCLTGITPVTG 475
++ L+GPNGAGK+T ++ + G+T G
Sbjct: 27 EILHLVGPNGAGKSTLLARMAGMTSGKG 54
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
+A+K + +NI + + ++GP+G+GK+T ++ + + T G+
Sbjct: 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 429 QKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
Q T A+ + +++ Q++ ++G +GAGK+T I C+ + T G
Sbjct: 13 QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 429 QKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
Q T A+ + +++ Q++ ++G +GAGK+T I C+ + T G
Sbjct: 36 QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 429 QKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
Q T A+ + +++ Q++ ++G +GAGK+T I C+ + T G
Sbjct: 36 QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83
>pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|C Chain C, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|D Chain D, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|F Chain F, Human Mterf4-Nsun4 Protein Complex
Length = 360
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 16/120 (13%)
Query: 324 ILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDE 383
IL Y+ I + VR ++ W G+ ++E + + VP T D
Sbjct: 192 ILHSYVPEEIRDGNQVRVTS--------WDGRKWGELEGDTYDRVLVDVP----CTTDRH 239
Query: 384 DVLEEENMV----KQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKG 439
+ EEEN + +++ R+ +P V + GL+ T PG + C + ++G
Sbjct: 240 SLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQG 299
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 27/43 (62%)
Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
+A+K + +NI + + + GP+G+GK+T ++ + + T G+
Sbjct: 19 YALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG 475
+ +K + +++ ++G NG+GKTT + L G+ G
Sbjct: 25 YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAG 65
>pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary
Complex
Length = 359
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 16/120 (13%)
Query: 324 ILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDE 383
IL Y+ I + VR ++ W G+ ++E + + VP T D
Sbjct: 191 ILHSYVPEEIRDGNQVRVTS--------WDGRKWGELEGDTYDRVLVDVP----CTTDRH 238
Query: 384 DVLEEENMV----KQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKG 439
+ EEEN + +++ R+ +P V + GL+ T PG + C + ++G
Sbjct: 239 SLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQG 298
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467
Y +KG+ +++ K + ++G +G+GK+T + L
Sbjct: 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL 50
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467
++GL + + K Q L+G +G GK+T + L
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLL 1079
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467
++GL + + K Q L+G +G GK+T + L
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLL 1079
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469
++ L + + + F +LGP GAGKT + + G
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAG 48
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
+K + +I Q L+GP G+GKTT ++ L V G
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRG 410
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,741,874
Number of Sequences: 62578
Number of extensions: 549710
Number of successful extensions: 1346
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1285
Number of HSP's gapped (non-prelim): 68
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)