Query 011717
Match_columns 479
No_of_seqs 228 out of 2790
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 04:27:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01257 rim_protein retinal- 100.0 2.7E-65 5.8E-70 590.7 45.7 442 9-479 520-988 (2272)
2 TIGR01257 rim_protein retinal- 100.0 7.2E-42 1.6E-46 396.6 35.5 354 73-479 1626-1997(2272)
3 KOG0059 Lipid exporter ABCA1 a 100.0 2.5E-35 5.4E-40 328.5 25.9 355 77-479 260-623 (885)
4 COG4152 ABC-type uncharacteriz 99.7 2.1E-18 4.7E-23 158.4 5.0 58 406-478 2-59 (300)
5 COG1137 YhbG ABC-type (unclass 99.7 1.9E-18 4E-23 154.4 -0.6 60 405-479 3-62 (243)
6 COG0411 LivG ABC-type branched 99.7 1.2E-17 2.5E-22 154.5 2.7 60 405-479 3-62 (250)
7 COG4555 NatA ABC-type Na+ tran 99.7 2.5E-17 5.4E-22 147.4 3.1 59 407-479 2-60 (245)
8 COG1131 CcmA ABC-type multidru 99.6 3.6E-16 7.7E-21 153.9 7.3 60 405-478 3-62 (293)
9 COG4586 ABC-type uncharacteriz 99.6 1.7E-16 3.7E-21 148.2 4.3 73 406-478 3-81 (325)
10 TIGR00956 3a01205 Pleiotropic 99.6 2.4E-13 5.1E-18 159.0 28.5 63 405-478 758-823 (1394)
11 PRK13537 nodulation ABC transp 99.6 1.5E-15 3.3E-20 150.7 7.4 60 405-479 6-65 (306)
12 PRK13536 nodulation factor exp 99.6 2.4E-15 5.2E-20 151.1 7.6 60 404-478 39-98 (340)
13 COG1134 TagH ABC-type polysacc 99.6 6.5E-15 1.4E-19 136.5 7.6 73 406-478 3-84 (249)
14 COG1129 MglA ABC-type sugar tr 99.5 5.9E-15 1.3E-19 151.4 6.9 61 404-479 6-66 (500)
15 COG3842 PotA ABC-type spermidi 99.5 8.5E-15 1.8E-19 145.1 7.2 61 404-479 3-63 (352)
16 TIGR03522 GldA_ABC_ATP gliding 99.5 1.4E-14 3E-19 143.7 7.2 58 406-478 2-59 (301)
17 COG3845 ABC-type uncharacteriz 99.5 1.2E-14 2.5E-19 146.5 6.5 61 404-479 2-62 (501)
18 TIGR01288 nodI ATP-binding ABC 99.5 1.8E-14 4E-19 143.0 7.4 59 405-478 3-61 (303)
19 COG1121 ZnuC ABC-type Mn/Zn tr 99.5 2.7E-14 5.8E-19 135.0 7.2 59 405-478 3-61 (254)
20 COG1120 FepC ABC-type cobalami 99.5 2.9E-14 6.4E-19 135.4 7.1 59 406-479 2-60 (258)
21 COG3839 MalK ABC-type sugar tr 99.5 3E-14 6.6E-19 140.4 7.1 59 406-479 3-61 (338)
22 COG0410 LivF ABC-type branched 99.5 3.9E-14 8.5E-19 130.2 6.8 58 406-478 3-60 (237)
23 COG1135 AbcC ABC-type metal io 99.5 5.4E-14 1.2E-18 134.2 7.0 63 407-479 2-64 (339)
24 PF12698 ABC2_membrane_3: ABC- 99.5 3.2E-14 7E-19 142.2 5.3 271 14-328 60-344 (344)
25 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.5 5.5E-14 1.2E-18 132.9 6.5 61 407-478 1-61 (218)
26 TIGR00960 3a0501s02 Type II (G 99.5 9.6E-14 2.1E-18 131.0 7.4 59 407-478 2-60 (216)
27 PRK09536 btuD corrinoid ABC tr 99.5 7.5E-14 1.6E-18 142.7 7.1 59 406-479 3-61 (402)
28 PRK13543 cytochrome c biogenes 99.5 1.3E-13 2.7E-18 130.1 8.1 60 404-478 9-68 (214)
29 PRK13539 cytochrome c biogenes 99.5 9.3E-14 2E-18 130.3 7.1 58 406-478 2-59 (207)
30 TIGR02314 ABC_MetN D-methionin 99.5 1E-13 2.2E-18 139.2 7.7 61 407-478 2-62 (343)
31 cd03216 ABC_Carb_Monos_I This 99.5 1E-13 2.3E-18 124.9 6.8 57 407-478 1-57 (163)
32 COG3638 ABC-type phosphate/pho 99.5 1.4E-13 2.9E-18 126.8 7.5 60 405-478 2-61 (258)
33 cd03293 ABC_NrtD_SsuB_transpor 99.5 9E-14 2E-18 131.6 6.6 61 407-478 1-61 (220)
34 PRK11247 ssuB aliphatic sulfon 99.4 1.3E-13 2.8E-18 133.5 7.6 60 404-478 10-69 (257)
35 cd03296 ABC_CysA_sulfate_impor 99.4 1.1E-13 2.3E-18 132.9 6.9 58 406-478 2-59 (239)
36 PRK10247 putative ABC transpor 99.4 1.4E-13 3.1E-18 130.8 7.6 60 404-478 5-64 (225)
37 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.4 1.3E-13 2.9E-18 121.5 6.8 57 407-478 1-57 (144)
38 PRK13637 cbiO cobalt transport 99.4 1.6E-13 3.4E-18 135.2 8.0 64 406-479 2-65 (287)
39 TIGR02673 FtsE cell division A 99.4 1.4E-13 2.9E-18 129.8 7.0 58 407-478 2-59 (214)
40 PRK13641 cbiO cobalt transport 99.4 1.5E-13 3.3E-18 135.4 7.6 64 406-479 2-65 (287)
41 PLN03140 ABC transporter G fam 99.4 3.3E-11 7.2E-16 140.9 28.0 72 405-478 866-939 (1470)
42 PRK13635 cbiO cobalt transport 99.4 1.9E-13 4.1E-18 134.1 7.9 61 405-478 4-64 (279)
43 cd03263 ABC_subfamily_A The AB 99.4 1.3E-13 2.8E-18 130.5 6.5 59 407-478 1-59 (220)
44 PRK13644 cbiO cobalt transport 99.4 1.7E-13 3.7E-18 134.1 7.6 59 407-479 2-60 (274)
45 PRK11629 lolD lipoprotein tran 99.4 2E-13 4.4E-18 130.4 7.6 64 405-479 4-67 (233)
46 PRK13652 cbiO cobalt transport 99.4 2E-13 4.4E-18 133.8 7.5 59 406-478 3-61 (277)
47 cd03228 ABCC_MRP_Like The MRP 99.4 1.8E-13 3.9E-18 124.4 6.7 59 407-478 1-59 (171)
48 PRK13648 cbiO cobalt transport 99.4 2.5E-13 5.4E-18 132.7 8.0 63 404-479 5-67 (269)
49 TIGR02211 LolD_lipo_ex lipopro 99.4 2.4E-13 5.2E-18 128.8 7.7 61 407-478 2-62 (221)
50 PRK10908 cell division protein 99.4 2.2E-13 4.7E-18 129.2 7.3 58 407-478 2-59 (222)
51 PRK11831 putative ABC transpor 99.4 2.2E-13 4.8E-18 133.0 7.6 60 404-478 5-64 (269)
52 PRK10575 iron-hydroxamate tran 99.4 2.4E-13 5.3E-18 132.4 7.8 60 404-478 9-68 (265)
53 COG4167 SapF ABC-type antimicr 99.4 6.1E-14 1.3E-18 123.7 3.1 67 406-478 4-70 (267)
54 PRK10895 lipopolysaccharide AB 99.4 2E-13 4.4E-18 131.1 7.0 58 406-478 3-60 (241)
55 PRK13646 cbiO cobalt transport 99.4 2.6E-13 5.6E-18 133.6 7.9 64 406-479 2-65 (286)
56 TIGR03411 urea_trans_UrtD urea 99.4 2.4E-13 5.1E-18 130.7 7.3 58 406-478 2-59 (242)
57 PRK10584 putative ABC transpor 99.4 2.8E-13 6.1E-18 128.9 7.8 63 405-478 5-67 (228)
58 cd03267 ABC_NatA_like Similar 99.4 1.5E-13 3.2E-18 131.6 5.8 72 407-478 1-78 (236)
59 cd03233 ABC_PDR_domain1 The pl 99.4 2.9E-13 6.2E-18 126.5 7.5 62 406-478 3-67 (202)
60 TIGR02323 CP_lyasePhnK phospho 99.4 2.7E-13 5.9E-18 131.2 7.4 58 406-478 3-60 (253)
61 PRK11432 fbpC ferric transport 99.4 2.7E-13 5.9E-18 136.7 7.7 60 404-478 4-63 (351)
62 PRK15112 antimicrobial peptide 99.4 3.5E-13 7.6E-18 131.4 8.2 67 406-478 4-70 (267)
63 COG4608 AppF ABC-type oligopep 99.4 3.2E-13 7E-18 127.7 7.5 69 405-479 3-71 (268)
64 cd03258 ABC_MetN_methionine_tr 99.4 2.5E-13 5.5E-18 129.7 6.9 61 407-478 2-62 (233)
65 COG1116 TauB ABC-type nitrate/ 99.4 3.2E-13 7E-18 126.1 7.2 58 406-478 3-60 (248)
66 PRK11153 metN DL-methionine tr 99.4 2.7E-13 5.8E-18 136.8 7.2 61 407-478 2-62 (343)
67 PRK11300 livG leucine/isoleuci 99.4 3E-13 6.6E-18 131.0 7.4 59 405-478 4-62 (255)
68 PRK13548 hmuV hemin importer A 99.4 2.8E-13 6.1E-18 131.4 7.2 58 406-478 2-59 (258)
69 PRK11614 livF leucine/isoleuci 99.4 3E-13 6.5E-18 129.5 7.2 58 406-478 5-62 (237)
70 cd03266 ABC_NatA_sodium_export 99.4 3.4E-13 7.3E-18 127.5 7.4 61 407-478 2-62 (218)
71 PRK13645 cbiO cobalt transport 99.4 3.9E-13 8.4E-18 132.7 8.1 64 405-478 5-68 (289)
72 PRK13636 cbiO cobalt transport 99.4 3.6E-13 7.8E-18 132.4 7.8 60 405-478 4-63 (283)
73 PRK09544 znuC high-affinity zi 99.4 4E-13 8.7E-18 129.7 7.9 58 406-478 4-61 (251)
74 PRK13647 cbiO cobalt transport 99.4 3.4E-13 7.3E-18 132.0 7.5 59 406-478 4-62 (274)
75 PRK13651 cobalt transporter AT 99.4 3.8E-13 8.3E-18 133.4 7.8 62 407-478 3-64 (305)
76 cd03257 ABC_NikE_OppD_transpor 99.4 3E-13 6.5E-18 128.7 6.7 61 407-478 2-62 (228)
77 PRK13631 cbiO cobalt transport 99.4 5.3E-13 1.2E-17 133.2 8.8 66 404-479 19-84 (320)
78 PRK13649 cbiO cobalt transport 99.4 3.7E-13 8.1E-18 132.2 7.6 63 406-478 2-64 (280)
79 cd03223 ABCD_peroxisomal_ALDP 99.4 3.4E-13 7.4E-18 121.9 6.7 58 407-478 1-58 (166)
80 PRK13634 cbiO cobalt transport 99.4 4.3E-13 9.4E-18 132.3 8.0 62 407-478 3-64 (290)
81 TIGR02324 CP_lyasePhnL phospho 99.4 4.1E-13 8.9E-18 127.5 7.5 64 407-478 2-65 (224)
82 PRK10851 sulfate/thiosulfate t 99.4 3.8E-13 8.1E-18 135.9 7.6 59 406-479 2-60 (353)
83 PRK15056 manganese/iron transp 99.4 3.9E-13 8.4E-18 131.5 7.5 59 406-478 6-64 (272)
84 cd03251 ABCC_MsbA MsbA is an e 99.4 3.2E-13 7E-18 129.0 6.8 59 407-478 1-59 (234)
85 TIGR02315 ABC_phnC phosphonate 99.4 3.1E-13 6.8E-18 129.9 6.6 58 407-478 2-59 (243)
86 PRK14250 phosphate ABC transpo 99.4 3.9E-13 8.4E-18 129.1 7.2 58 406-478 3-60 (241)
87 PRK11701 phnK phosphonate C-P 99.4 4.6E-13 1E-17 129.9 7.8 59 405-478 5-63 (258)
88 PRK13632 cbiO cobalt transport 99.4 4.9E-13 1.1E-17 130.7 8.0 62 404-478 5-66 (271)
89 PRK11650 ugpC glycerol-3-phosp 99.4 3.7E-13 7.9E-18 136.2 7.3 60 406-479 3-62 (356)
90 cd03247 ABCC_cytochrome_bd The 99.4 4.3E-13 9.4E-18 122.7 7.1 59 407-478 1-59 (178)
91 cd03248 ABCC_TAP TAP, the Tran 99.4 5.4E-13 1.2E-17 126.8 7.9 64 403-478 8-71 (226)
92 cd03250 ABCC_MRP_domain1 Domai 99.4 4E-13 8.6E-18 125.7 6.9 62 407-478 1-62 (204)
93 PRK11000 maltose/maltodextrin 99.4 3.8E-13 8.2E-18 136.9 7.2 58 406-478 3-60 (369)
94 PRK11264 putative amino-acid A 99.4 3.8E-13 8.3E-18 129.9 6.7 58 406-478 3-60 (250)
95 TIGR03265 PhnT2 putative 2-ami 99.4 4.5E-13 9.7E-18 135.4 7.5 58 406-478 4-61 (353)
96 PRK13639 cbiO cobalt transport 99.4 5E-13 1.1E-17 130.9 7.5 58 407-478 2-59 (275)
97 PRK13643 cbiO cobalt transport 99.4 5.2E-13 1.1E-17 131.6 7.6 63 407-479 2-64 (288)
98 COG1124 DppF ABC-type dipeptid 99.4 5.1E-13 1.1E-17 123.8 6.8 63 406-479 3-65 (252)
99 PRK10253 iron-enterobactin tra 99.4 5.1E-13 1.1E-17 130.2 7.2 60 404-478 5-64 (265)
100 PRK13633 cobalt transporter AT 99.4 6.9E-13 1.5E-17 130.2 8.1 64 406-478 4-67 (280)
101 PRK13650 cbiO cobalt transport 99.4 6.2E-13 1.3E-17 130.5 7.7 61 406-478 4-64 (279)
102 PRK14248 phosphate ABC transpo 99.4 7.2E-13 1.6E-17 129.3 8.1 60 404-478 19-83 (268)
103 PRK11231 fecE iron-dicitrate t 99.4 5.3E-13 1.2E-17 129.3 7.0 58 406-478 2-59 (255)
104 PRK11124 artP arginine transpo 99.4 5.6E-13 1.2E-17 128.1 7.1 58 406-478 2-59 (242)
105 cd03213 ABCG_EPDR ABCG transpo 99.4 5.9E-13 1.3E-17 123.6 6.9 65 405-478 2-68 (194)
106 cd03252 ABCC_Hemolysin The ABC 99.4 5.4E-13 1.2E-17 127.8 6.8 59 407-478 1-59 (237)
107 cd03246 ABCC_Protease_Secretio 99.4 6.3E-13 1.4E-17 121.0 6.9 59 407-478 1-59 (173)
108 PRK10070 glycine betaine trans 99.4 5.9E-13 1.3E-17 136.1 7.5 74 406-479 4-86 (400)
109 TIGR02982 heterocyst_DevA ABC 99.4 7E-13 1.5E-17 125.5 7.5 63 406-479 1-63 (220)
110 cd03230 ABC_DR_subfamily_A Thi 99.4 5.9E-13 1.3E-17 121.2 6.7 57 407-478 1-57 (173)
111 COG1127 Ttg2A ABC-type transpo 99.4 6.2E-13 1.3E-17 122.8 6.8 61 404-479 6-66 (263)
112 TIGR02769 nickel_nikE nickel i 99.4 5.4E-13 1.2E-17 130.0 6.8 67 406-478 2-68 (265)
113 cd03245 ABCC_bacteriocin_expor 99.4 6.5E-13 1.4E-17 125.7 7.2 59 407-478 3-61 (220)
114 COG1126 GlnQ ABC-type polar am 99.4 6.1E-13 1.3E-17 121.0 6.5 59 406-479 2-60 (240)
115 cd03244 ABCC_MRP_domain2 Domai 99.4 6.5E-13 1.4E-17 125.8 7.0 59 407-478 3-61 (221)
116 TIGR03258 PhnT 2-aminoethylpho 99.4 6.4E-13 1.4E-17 134.5 7.3 58 406-478 5-64 (362)
117 PRK10619 histidine/lysine/argi 99.4 6.7E-13 1.5E-17 128.7 7.2 59 405-478 4-62 (257)
118 PRK14259 phosphate ABC transpo 99.4 6.4E-13 1.4E-17 129.7 7.1 60 404-478 11-75 (269)
119 PRK13546 teichoic acids export 99.4 8.2E-13 1.8E-17 128.4 7.8 75 404-478 2-81 (264)
120 PRK14242 phosphate transporter 99.4 6.8E-13 1.5E-17 128.4 7.0 60 404-478 4-68 (253)
121 COG1118 CysA ABC-type sulfate/ 99.4 3.7E-13 8E-18 128.3 4.8 58 406-478 2-59 (345)
122 PRK11308 dppF dipeptide transp 99.4 1.2E-12 2.5E-17 131.2 8.7 69 405-478 4-72 (327)
123 cd03254 ABCC_Glucan_exporter_l 99.4 7.5E-13 1.6E-17 126.1 7.0 59 406-478 2-60 (229)
124 TIGR03415 ABC_choXWV_ATP choli 99.4 5.5E-13 1.2E-17 135.4 6.2 73 407-479 1-82 (382)
125 cd03369 ABCC_NFT1 Domain 2 of 99.4 9.8E-13 2.1E-17 123.3 7.5 61 405-478 5-65 (207)
126 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.4 7.2E-13 1.6E-17 127.0 6.7 60 407-478 1-60 (238)
127 PRK09452 potA putrescine/sperm 99.4 9.4E-13 2E-17 133.8 7.7 60 404-478 12-71 (375)
128 PRK14246 phosphate ABC transpo 99.4 8.1E-13 1.8E-17 128.1 6.9 60 404-478 8-67 (257)
129 PRK15079 oligopeptide ABC tran 99.4 1.3E-12 2.8E-17 130.9 8.6 74 404-479 6-79 (331)
130 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.4 3.9E-13 8.4E-18 127.7 4.5 57 407-478 23-79 (224)
131 PRK14267 phosphate ABC transpo 99.4 9E-13 1.9E-17 127.5 7.0 58 406-478 4-66 (253)
132 PRK14235 phosphate transporter 99.4 9.5E-13 2.1E-17 128.4 7.1 60 404-478 17-81 (267)
133 COG4674 Uncharacterized ABC-ty 99.4 3.8E-13 8.3E-18 120.1 3.9 60 405-479 4-63 (249)
134 PRK13642 cbiO cobalt transport 99.4 1.4E-12 2.9E-17 128.0 7.9 62 406-479 4-65 (277)
135 PRK13640 cbiO cobalt transport 99.4 1.4E-12 3E-17 128.3 7.8 61 405-478 4-67 (282)
136 cd03294 ABC_Pro_Gly_Bertaine T 99.4 5.5E-13 1.2E-17 130.2 4.8 56 408-478 26-81 (269)
137 PRK14274 phosphate ABC transpo 99.3 1.3E-12 2.8E-17 126.9 7.0 60 404-478 10-74 (259)
138 PRK14238 phosphate transporter 99.3 1.6E-12 3.4E-17 127.1 7.6 60 404-478 22-86 (271)
139 PRK14241 phosphate transporter 99.3 1.2E-12 2.6E-17 127.0 6.8 58 406-478 4-66 (258)
140 PRK11607 potG putrescine trans 99.3 1.5E-12 3.3E-17 132.5 7.6 61 404-479 17-77 (377)
141 PRK14268 phosphate ABC transpo 99.3 1.5E-12 3.3E-17 126.3 7.3 60 404-478 10-74 (258)
142 PRK14237 phosphate transporter 99.3 1.8E-12 3.8E-17 126.5 7.6 60 404-478 18-82 (267)
143 PRK10744 pstB phosphate transp 99.3 1.7E-12 3.6E-17 126.2 7.4 60 404-478 11-75 (260)
144 PRK15439 autoinducer 2 ABC tra 99.3 1.9E-12 4.2E-17 137.7 8.3 59 405-478 10-68 (510)
145 PRK11022 dppD dipeptide transp 99.3 1.8E-12 3.8E-17 129.9 7.5 62 406-478 3-68 (326)
146 COG2884 FtsE Predicted ATPase 99.3 7.6E-13 1.6E-17 117.8 4.2 58 407-478 2-59 (223)
147 CHL00131 ycf16 sulfate ABC tra 99.3 1.9E-12 4.1E-17 125.2 7.3 60 404-478 5-66 (252)
148 cd03288 ABCC_SUR2 The SUR doma 99.3 2.5E-12 5.4E-17 124.8 8.0 63 404-479 17-79 (257)
149 PRK10762 D-ribose transporter 99.3 1.5E-12 3.1E-17 138.4 7.0 58 406-478 4-61 (501)
150 PRK10419 nikE nickel transport 99.3 1.8E-12 3.8E-17 126.5 7.0 67 406-478 3-69 (268)
151 PRK14247 phosphate ABC transpo 99.3 1.7E-12 3.7E-17 125.3 6.8 58 406-478 3-65 (250)
152 PRK14270 phosphate ABC transpo 99.3 1.9E-12 4E-17 125.2 7.0 60 404-478 2-66 (251)
153 PRK10938 putative molybdenum t 99.3 1.4E-12 3.1E-17 138.2 6.7 58 406-478 3-60 (490)
154 PRK10418 nikD nickel transport 99.3 2.1E-12 4.5E-17 125.1 7.3 57 406-478 4-64 (254)
155 PRK14273 phosphate ABC transpo 99.3 2.1E-12 4.6E-17 125.0 7.3 60 404-478 5-69 (254)
156 PRK14256 phosphate ABC transpo 99.3 2E-12 4.3E-17 125.1 7.0 59 405-478 3-66 (252)
157 COG1136 SalX ABC-type antimicr 99.3 2E-12 4.4E-17 120.5 6.7 61 407-478 2-62 (226)
158 PRK14254 phosphate ABC transpo 99.3 2.5E-12 5.5E-17 126.5 7.8 60 404-478 37-101 (285)
159 PRK15093 antimicrobial peptide 99.3 2.3E-12 4.9E-17 129.4 7.5 62 406-478 3-68 (330)
160 PRK14262 phosphate ABC transpo 99.3 2.1E-12 4.5E-17 124.8 6.9 58 406-478 3-65 (250)
161 cd03232 ABC_PDR_domain2 The pl 99.3 2.9E-12 6.2E-17 118.7 7.4 62 406-478 3-66 (192)
162 PRK14251 phosphate ABC transpo 99.3 2.5E-12 5.5E-17 124.2 7.1 58 406-478 4-66 (251)
163 PRK09984 phosphonate/organopho 99.3 2.6E-12 5.6E-17 125.0 7.2 59 405-478 3-64 (262)
164 PRK09700 D-allose transporter 99.3 2.4E-12 5.2E-17 137.1 7.3 59 405-478 4-62 (510)
165 PRK14240 phosphate transporter 99.3 2.6E-12 5.5E-17 124.1 6.7 58 406-478 3-65 (250)
166 PRK14236 phosphate transporter 99.3 3.6E-12 7.8E-17 124.6 7.8 60 404-478 23-87 (272)
167 PRK14243 phosphate transporter 99.3 2.7E-12 5.9E-17 125.0 6.9 60 404-478 8-72 (264)
168 PRK14269 phosphate ABC transpo 99.3 2.7E-12 5.9E-17 123.7 6.7 58 406-478 2-62 (246)
169 PRK14272 phosphate ABC transpo 99.3 2.5E-12 5.4E-17 124.4 6.4 58 406-478 4-66 (252)
170 PRK11819 putative ABC transpor 99.3 2.7E-12 5.8E-17 138.0 7.2 61 404-478 4-64 (556)
171 PRK10636 putative ABC transpor 99.3 3E-12 6.4E-17 139.5 7.6 60 404-478 310-369 (638)
172 PRK14252 phosphate ABC transpo 99.3 3.5E-12 7.6E-17 124.3 7.4 60 404-478 14-78 (265)
173 PRK09473 oppD oligopeptide tra 99.3 3.6E-12 7.9E-17 127.7 7.7 64 404-478 10-76 (330)
174 PRK14271 phosphate ABC transpo 99.3 3.4E-12 7.3E-17 125.1 7.2 60 404-478 19-83 (276)
175 PRK14253 phosphate ABC transpo 99.3 2.9E-12 6.2E-17 123.7 6.6 58 406-478 3-65 (249)
176 COG1123 ATPase components of v 99.3 4.1E-12 8.8E-17 131.6 8.0 72 403-478 277-348 (539)
177 PRK14275 phosphate ABC transpo 99.3 3.6E-12 7.7E-17 125.5 7.3 61 403-478 36-101 (286)
178 PRK11288 araG L-arabinose tran 99.3 3.6E-12 7.8E-17 135.4 7.7 60 405-479 3-62 (501)
179 PRK13549 xylose transporter AT 99.3 3.1E-12 6.8E-17 136.1 7.2 59 405-478 4-64 (506)
180 PRK14264 phosphate ABC transpo 99.3 5.1E-12 1.1E-16 125.6 8.0 61 403-478 42-107 (305)
181 cd03234 ABCG_White The White s 99.3 3.4E-12 7.4E-17 121.4 6.2 62 406-478 3-67 (226)
182 PRK14255 phosphate ABC transpo 99.3 4.6E-12 1E-16 122.5 7.2 60 404-478 3-67 (252)
183 PRK10261 glutathione transport 99.3 5.9E-12 1.3E-16 136.9 8.7 64 404-478 10-73 (623)
184 COG1119 ModF ABC-type molybden 99.3 4.7E-12 1E-16 117.5 6.7 61 403-478 28-88 (257)
185 PRK14261 phosphate ABC transpo 99.3 5.2E-12 1.1E-16 122.2 7.4 59 405-478 5-68 (253)
186 PRK14249 phosphate ABC transpo 99.3 5.1E-12 1.1E-16 122.1 7.2 58 406-478 4-66 (251)
187 PRK14265 phosphate ABC transpo 99.3 6E-12 1.3E-16 123.2 7.7 60 404-478 18-82 (274)
188 PRK14260 phosphate ABC transpo 99.3 4.4E-12 9.5E-17 123.2 6.7 59 405-478 6-69 (259)
189 PRK14239 phosphate transporter 99.3 5.9E-12 1.3E-16 121.7 7.4 59 405-478 4-67 (252)
190 PRK14263 phosphate ABC transpo 99.3 6.4E-12 1.4E-16 122.1 7.5 60 404-478 6-70 (261)
191 PRK14245 phosphate ABC transpo 99.3 5.9E-12 1.3E-16 121.6 7.1 59 405-478 2-65 (250)
192 PRK11147 ABC transporter ATPas 99.3 5.5E-12 1.2E-16 137.5 7.6 60 404-478 317-376 (635)
193 PRK11819 putative ABC transpor 99.3 5.2E-12 1.1E-16 135.8 7.3 60 404-478 322-381 (556)
194 cd03291 ABCC_CFTR1 The CFTR su 99.3 7.8E-12 1.7E-16 122.5 7.9 59 403-478 36-94 (282)
195 TIGR03719 ABC_ABC_ChvD ATP-bin 99.3 5E-12 1.1E-16 135.8 7.1 60 405-478 3-62 (552)
196 COG1101 PhnK ABC-type uncharac 99.3 2.4E-12 5.1E-17 116.8 3.8 62 407-478 2-63 (263)
197 cd00267 ABC_ATPase ABC (ATP-bi 99.3 5.9E-12 1.3E-16 112.7 6.4 56 409-479 2-57 (157)
198 TIGR03719 ABC_ABC_ChvD ATP-bin 99.3 5.4E-12 1.2E-16 135.6 7.2 61 404-479 320-380 (552)
199 PRK11147 ABC transporter ATPas 99.3 4.9E-12 1.1E-16 137.9 7.0 58 406-478 3-60 (635)
200 PRK10938 putative molybdenum t 99.3 6.5E-12 1.4E-16 133.2 7.5 60 404-478 258-318 (490)
201 PRK15064 ABC transporter ATP-b 99.3 5.9E-12 1.3E-16 134.7 7.1 60 404-478 317-376 (530)
202 TIGR03269 met_CoM_red_A2 methy 99.3 8.3E-12 1.8E-16 133.3 7.9 66 404-479 277-342 (520)
203 COG1122 CbiO ABC-type cobalt t 99.3 1.1E-11 2.5E-16 117.4 7.9 59 406-478 3-61 (235)
204 PRK13545 tagH teichoic acids e 99.3 9.4E-12 2E-16 129.4 7.8 62 405-478 20-81 (549)
205 PRK14258 phosphate ABC transpo 99.3 8.3E-12 1.8E-16 121.3 7.0 55 405-474 6-60 (261)
206 PRK14244 phosphate ABC transpo 99.2 8.3E-12 1.8E-16 120.7 6.4 58 406-478 5-67 (251)
207 PRK10261 glutathione transport 99.2 1.1E-11 2.4E-16 134.8 7.7 72 404-479 311-382 (623)
208 PRK14266 phosphate ABC transpo 99.2 1.2E-11 2.6E-16 119.4 6.9 58 406-478 3-65 (250)
209 PRK09700 D-allose transporter 99.2 8.5E-12 1.8E-16 132.9 6.3 58 405-479 264-321 (510)
210 TIGR02633 xylG D-xylose ABC tr 99.2 1.3E-11 2.7E-16 131.3 6.3 62 405-478 256-318 (500)
211 cd03289 ABCC_CFTR2 The CFTR su 99.2 1.9E-11 4.1E-16 119.4 6.9 59 407-479 3-61 (275)
212 PRK13549 xylose transporter AT 99.2 1.3E-11 2.8E-16 131.3 6.2 63 405-479 258-321 (506)
213 PLN03073 ABC transporter F fam 99.2 2.2E-11 4.7E-16 133.6 7.6 61 404-478 506-566 (718)
214 PRK15134 microcin C ABC transp 99.2 2.4E-11 5.2E-16 130.0 7.8 63 405-478 4-71 (529)
215 COG0488 Uup ATPase components 99.2 2.7E-11 5.9E-16 127.4 6.4 58 406-478 3-60 (530)
216 PRK10982 galactose/methyl gala 99.2 3.5E-11 7.6E-16 127.6 6.2 59 404-479 248-306 (491)
217 COG4107 PhnK ABC-type phosphon 99.1 3.6E-11 7.8E-16 105.5 4.6 60 404-478 4-63 (258)
218 PRK13409 putative ATPase RIL; 99.1 6.5E-11 1.4E-15 127.4 7.1 59 404-478 338-396 (590)
219 PRK13409 putative ATPase RIL; 99.1 4.4E-11 9.6E-16 128.7 5.4 43 435-478 88-130 (590)
220 PRK14257 phosphate ABC transpo 99.1 1.2E-10 2.6E-15 116.6 8.0 62 404-478 78-144 (329)
221 PRK15134 microcin C ABC transp 99.1 7.2E-11 1.6E-15 126.4 6.1 71 404-479 273-343 (529)
222 PLN03073 ABC transporter F fam 99.1 1.3E-10 2.7E-15 127.6 7.7 60 404-478 175-237 (718)
223 PRK11160 cysteine/glutathione 99.1 1.2E-10 2.5E-15 125.9 7.4 62 405-479 337-398 (574)
224 PRK10762 D-ribose transporter 99.1 1.1E-10 2.3E-15 124.2 5.8 54 405-478 256-309 (501)
225 TIGR00954 3a01203 Peroxysomal 99.1 2.2E-10 4.8E-15 125.3 8.0 60 405-478 450-509 (659)
226 TIGR01842 type_I_sec_PrtD type 99.1 2.2E-10 4.8E-15 123.0 7.5 61 405-478 315-375 (544)
227 TIGR02857 CydD thiol reductant 99.1 2.1E-10 4.5E-15 122.9 7.3 62 405-479 319-380 (529)
228 PRK11288 araG L-arabinose tran 99.1 1.5E-10 3.2E-15 123.2 6.0 44 436-479 268-311 (501)
229 TIGR03797 NHPM_micro_ABC2 NHPM 99.1 2.4E-10 5.1E-15 126.2 7.8 62 405-479 450-511 (686)
230 TIGR02868 CydC thiol reductant 99.1 2.5E-10 5.5E-15 122.2 7.8 60 405-478 333-392 (529)
231 TIGR03796 NHPM_micro_ABC1 NHPM 99.1 2.3E-10 4.9E-15 126.9 7.3 61 405-478 476-536 (710)
232 TIGR01192 chvA glucan exporter 99.1 2.6E-10 5.5E-15 123.5 7.5 60 405-478 333-392 (585)
233 COG4778 PhnL ABC-type phosphon 99.1 1.9E-10 4E-15 100.8 5.1 66 405-478 3-68 (235)
234 PRK10522 multidrug transporter 99.0 2.5E-10 5.4E-15 122.7 7.3 60 405-478 321-380 (547)
235 PRK15439 autoinducer 2 ABC tra 99.0 1.7E-10 3.6E-15 122.9 5.8 55 404-478 266-320 (510)
236 PRK10535 macrolide transporter 99.0 2.9E-10 6.2E-15 124.3 7.7 62 406-478 4-65 (648)
237 COG0396 sufC Cysteine desulfur 99.0 2E-10 4.3E-15 105.7 5.3 59 406-478 3-63 (251)
238 PLN03211 ABC transporter G-25; 99.0 1.5E-10 3.2E-15 126.2 5.2 45 434-478 81-127 (659)
239 COG2274 SunT ABC-type bacterio 99.0 2.5E-10 5.5E-15 124.0 6.6 63 404-479 469-531 (709)
240 TIGR01194 cyc_pep_trnsptr cycl 99.0 4E-10 8.6E-15 121.3 8.0 64 405-478 336-399 (555)
241 PRK11176 lipid transporter ATP 99.0 3.1E-10 6.7E-15 123.0 7.3 62 405-479 340-401 (582)
242 TIGR00958 3a01208 Conjugate Tr 99.0 2.7E-10 5.8E-15 126.0 6.8 63 405-479 477-539 (711)
243 COG0488 Uup ATPase components 99.0 3E-10 6.6E-15 119.6 6.7 63 402-478 317-379 (530)
244 PRK10789 putative multidrug tr 99.0 3.4E-10 7.4E-15 122.2 7.3 61 405-478 312-372 (569)
245 COG4133 CcmA ABC-type transpor 99.0 3E-10 6.4E-15 101.4 5.3 45 435-479 16-60 (209)
246 TIGR03375 type_I_sec_LssB type 99.0 5E-10 1.1E-14 123.8 7.9 61 405-478 462-522 (694)
247 TIGR01193 bacteriocin_ABC ABC- 99.0 5.8E-10 1.3E-14 123.6 7.8 61 405-479 472-532 (708)
248 COG4988 CydD ABC-type transpor 99.0 4.1E-10 8.9E-15 116.5 5.9 59 406-478 320-378 (559)
249 TIGR01846 type_I_sec_HlyB type 99.0 5E-10 1.1E-14 123.8 6.9 61 405-478 454-514 (694)
250 PTZ00265 multidrug resistance 99.0 4.9E-10 1.1E-14 131.7 6.7 62 406-479 382-443 (1466)
251 KOG0065 Pleiotropic drug resis 99.0 1.2E-07 2.6E-12 106.3 24.6 293 137-477 519-845 (1391)
252 COG4181 Predicted ABC-type tra 99.0 6.8E-10 1.5E-14 97.5 5.2 64 405-479 5-68 (228)
253 COG4987 CydC ABC-type transpor 99.0 6.3E-10 1.4E-14 113.6 5.5 60 406-478 336-395 (573)
254 COG4525 TauB ABC-type taurine 99.0 7.2E-10 1.6E-14 99.3 5.1 59 407-478 4-62 (259)
255 PRK10790 putative multidrug tr 98.9 1.3E-09 2.8E-14 118.4 7.5 60 405-478 339-398 (592)
256 PRK13657 cyclic beta-1,2-gluca 98.9 1.4E-09 3E-14 118.0 7.7 60 405-478 333-392 (588)
257 TIGR02204 MsbA_rel ABC transpo 98.9 1.3E-09 2.7E-14 118.1 7.3 62 405-478 336-397 (576)
258 COG4175 ProV ABC-type proline/ 98.9 9.3E-10 2E-14 105.5 5.3 75 405-479 3-86 (386)
259 TIGR02203 MsbA_lipidA lipid A 98.9 2.1E-09 4.5E-14 116.3 7.4 62 405-479 329-390 (571)
260 KOG0058 Peptide exporter, ABC 98.9 2E-09 4.3E-14 113.7 6.6 63 404-478 463-525 (716)
261 COG1123 ATPase components of v 98.9 2.9E-09 6.3E-14 110.6 7.2 63 405-478 4-70 (539)
262 KOG0055 Multidrug/pheromone ex 98.9 2.3E-09 4.9E-14 119.6 6.4 64 404-479 348-411 (1228)
263 COG0444 DppD ABC-type dipeptid 98.9 2.7E-09 5.9E-14 103.4 6.2 61 407-478 2-67 (316)
264 PRK11174 cysteine/glutathione 98.9 3.9E-09 8.5E-14 114.6 7.6 60 405-479 348-407 (588)
265 COG1117 PstB ABC-type phosphat 98.8 6.1E-09 1.3E-13 94.9 5.6 57 404-475 5-61 (253)
266 COG1132 MdlB ABC-type multidru 98.8 8.2E-09 1.8E-13 111.5 7.5 61 405-479 327-387 (567)
267 PLN03130 ABC transporter C fam 98.8 8.2E-09 1.8E-13 122.7 8.0 62 405-479 1236-1297(1622)
268 PLN03232 ABC transporter C fam 98.8 9.8E-09 2.1E-13 121.7 7.8 62 405-479 1233-1294(1495)
269 COG4619 ABC-type uncharacteriz 98.8 7E-09 1.5E-13 90.9 4.8 45 435-479 17-61 (223)
270 TIGR00957 MRP_assoc_pro multi 98.8 1.1E-08 2.4E-13 121.4 7.5 61 405-478 635-695 (1522)
271 COG4615 PvdE ABC-type sideroph 98.8 1.3E-08 2.7E-13 100.3 6.6 62 404-479 320-381 (546)
272 TIGR00955 3a01204 The Eye Pigm 98.8 6.7E-09 1.4E-13 113.0 5.2 46 433-478 37-85 (617)
273 KOG0056 Heavy metal exporter H 98.8 1.1E-08 2.5E-13 102.9 6.3 81 384-478 514-595 (790)
274 PTZ00243 ABC transporter; Prov 98.7 1.4E-08 3E-13 120.5 7.3 62 405-479 1307-1368(1560)
275 KOG0057 Mitochondrial Fe/S clu 98.7 2.2E-08 4.8E-13 102.6 7.1 62 403-479 348-409 (591)
276 TIGR00957 MRP_assoc_pro multi 98.7 2E-08 4.3E-13 119.3 7.4 62 405-479 1283-1344(1522)
277 COG4161 ArtP ABC-type arginine 98.7 1.8E-08 3.8E-13 87.7 4.9 57 406-477 2-58 (242)
278 PLN03140 ABC transporter G fam 98.7 1.3E-08 2.8E-13 119.5 5.1 49 430-478 174-225 (1470)
279 PTZ00265 multidrug resistance 98.7 3.1E-08 6.7E-13 116.7 7.6 58 405-474 1164-1221(1466)
280 KOG0927 Predicted transporter 98.7 1.6E-08 3.4E-13 103.4 4.0 62 403-478 386-447 (614)
281 TIGR00956 3a01205 Pleiotropic 98.7 2E-08 4.4E-13 118.0 5.5 47 432-478 72-122 (1394)
282 cd00820 PEPCK_HprK Phosphoenol 98.6 3.6E-08 7.8E-13 81.4 5.0 34 435-468 3-36 (107)
283 COG4598 HisP ABC-type histidin 98.6 3E-08 6.6E-13 87.8 4.1 60 404-478 4-63 (256)
284 TIGR01271 CFTR_protein cystic 98.6 6.5E-08 1.4E-12 114.7 7.9 61 405-479 1216-1276(1490)
285 COG4618 ArpD ABC-type protease 98.6 1.2E-07 2.6E-12 96.4 7.5 63 403-478 331-393 (580)
286 PTZ00243 ABC transporter; Prov 98.6 5.9E-08 1.3E-12 115.3 5.7 45 434-478 673-717 (1560)
287 TIGR01271 CFTR_protein cystic 98.5 8.9E-08 1.9E-12 113.5 5.5 44 435-478 440-483 (1490)
288 PLN03232 ABC transporter C fam 98.5 2E-07 4.4E-12 110.7 8.0 62 405-478 613-674 (1495)
289 TIGR03238 dnd_assoc_3 dnd syst 98.5 8.3E-08 1.8E-12 98.3 3.2 40 435-476 20-59 (504)
290 PLN03130 ABC transporter C fam 98.5 2.2E-07 4.7E-12 110.8 6.9 62 405-478 613-675 (1622)
291 COG4172 ABC-type uncharacteriz 98.4 3.6E-07 7.8E-12 90.6 6.9 72 402-478 272-343 (534)
292 KOG0055 Multidrug/pheromone ex 98.4 2.1E-07 4.5E-12 104.2 5.7 62 405-478 986-1047(1228)
293 KOG2355 Predicted ABC-type tra 98.4 4.8E-07 1E-11 82.0 6.5 59 404-476 11-69 (291)
294 PRK07196 fliI flagellum-specif 98.3 5.9E-07 1.3E-11 92.3 4.2 40 435-475 144-183 (434)
295 COG1245 Predicted ATPase, RNas 98.3 1.1E-06 2.4E-11 88.4 5.7 57 405-477 341-397 (591)
296 KOG0054 Multidrug resistance-a 98.3 1.5E-06 3.2E-11 99.6 7.4 64 402-478 1134-1197(1381)
297 PRK06002 fliI flagellum-specif 98.2 1.9E-06 4.1E-11 88.6 7.2 60 404-478 137-196 (450)
298 KOG0927 Predicted transporter 98.2 2.6E-06 5.6E-11 87.5 6.7 57 404-475 73-129 (614)
299 KOG0061 Transporter, ABC super 98.2 3.8E-06 8.3E-11 91.0 7.5 64 405-478 24-90 (613)
300 PRK06995 flhF flagellar biosyn 98.1 8.6E-07 1.9E-11 92.3 1.2 42 435-476 244-285 (484)
301 KOG0060 Long-chain acyl-CoA tr 98.1 6.8E-06 1.5E-10 85.1 7.5 62 404-478 431-492 (659)
302 COG4136 ABC-type uncharacteriz 98.1 6.7E-06 1.5E-10 71.1 6.2 39 436-474 17-55 (213)
303 cd01136 ATPase_flagellum-secre 98.1 3.7E-06 8.1E-11 83.5 5.1 42 435-477 58-99 (326)
304 COG4172 ABC-type uncharacteriz 98.0 5.9E-06 1.3E-10 82.2 5.6 59 404-473 4-62 (534)
305 KOG0066 eIF2-interacting prote 98.0 4.3E-06 9.4E-11 83.6 4.4 62 402-477 582-643 (807)
306 cd03282 ABC_MSH4_euk MutS4 hom 98.0 5.8E-06 1.3E-10 77.2 4.4 35 435-469 17-51 (204)
307 COG1245 Predicted ATPase, RNas 98.0 6.3E-06 1.4E-10 83.1 4.6 34 444-477 97-130 (591)
308 PRK07594 type III secretion sy 98.0 7E-06 1.5E-10 84.4 4.8 59 404-477 127-185 (433)
309 PRK07721 fliI flagellum-specif 98.0 6.2E-06 1.4E-10 85.3 4.3 43 435-478 147-189 (438)
310 KOG0054 Multidrug resistance-a 98.0 1.7E-05 3.8E-10 91.1 8.1 65 402-478 514-578 (1381)
311 PRK05688 fliI flagellum-specif 97.9 1.2E-05 2.6E-10 82.9 5.1 39 435-474 157-195 (451)
312 COG2401 ABC-type ATPase fused 97.9 9.9E-06 2.1E-10 80.8 4.1 45 434-478 396-448 (593)
313 cd03279 ABC_sbcCD SbcCD and ot 97.9 8.2E-06 1.8E-10 76.8 3.4 32 445-476 26-58 (213)
314 PRK08149 ATP synthase SpaL; Va 97.9 1.4E-05 3E-10 82.2 5.1 40 435-475 140-179 (428)
315 PRK09099 type III secretion sy 97.9 1.4E-05 3E-10 82.5 4.7 42 435-477 152-193 (441)
316 cd03243 ABC_MutS_homologs The 97.9 1.5E-05 3.2E-10 74.4 4.4 32 437-468 19-50 (202)
317 PRK09862 putative ATP-dependen 97.8 1.4E-05 3E-10 84.0 4.3 53 410-477 188-240 (506)
318 TIGR01026 fliI_yscN ATPase Fli 97.8 1.5E-05 3.2E-10 82.6 4.1 41 435-476 152-192 (440)
319 TIGR02546 III_secr_ATP type II 97.8 1.4E-05 3E-10 82.6 3.7 42 435-477 134-175 (422)
320 PRK09270 nucleoside triphospha 97.8 1.1E-05 2.5E-10 76.7 2.9 32 447-478 33-64 (229)
321 PRK14723 flhF flagellar biosyn 97.8 8.4E-06 1.8E-10 88.8 1.8 41 436-476 174-214 (767)
322 PRK06793 fliI flagellum-specif 97.8 2.7E-05 5.8E-10 80.2 5.3 59 405-478 129-187 (432)
323 KOG0062 ATPase component of AB 97.8 2.4E-05 5.1E-10 80.1 4.7 51 404-469 78-128 (582)
324 PF13555 AAA_29: P-loop contai 97.8 3.5E-05 7.6E-10 56.9 4.3 34 437-470 12-46 (62)
325 cd03287 ABC_MSH3_euk MutS3 hom 97.8 1.9E-05 4.2E-10 74.6 3.7 43 435-477 19-62 (222)
326 PRK05922 type III secretion sy 97.8 2.8E-05 6.1E-10 79.9 5.0 42 435-477 146-187 (434)
327 TIGR03497 FliI_clade2 flagella 97.8 3E-05 6.5E-10 79.7 5.2 42 435-477 126-167 (413)
328 TIGR03498 FliI_clade3 flagella 97.8 2.4E-05 5.1E-10 80.4 4.3 42 435-477 129-170 (418)
329 PRK08972 fliI flagellum-specif 97.7 3.2E-05 6.8E-10 79.4 5.0 39 435-474 151-189 (444)
330 COG4178 ABC-type uncharacteriz 97.7 7.2E-05 1.6E-09 79.3 7.3 61 404-478 390-450 (604)
331 KOG0064 Peroxisomal long-chain 97.7 6.8E-05 1.5E-09 77.0 6.7 59 405-477 480-538 (728)
332 TIGR00554 panK_bact pantothena 97.7 1.8E-05 3.8E-10 77.6 2.5 31 448-478 63-95 (290)
333 TIGR03496 FliI_clade1 flagella 97.7 3.7E-05 8.1E-10 78.9 5.0 41 435-476 126-166 (411)
334 COG4170 SapD ABC-type antimicr 97.7 5.7E-05 1.2E-09 68.9 5.4 55 407-472 4-58 (330)
335 PRK06315 type III secretion sy 97.7 3E-05 6.5E-10 80.0 3.4 41 434-475 152-192 (442)
336 PRK07960 fliI flagellum-specif 97.6 4.4E-05 9.5E-10 78.6 3.8 40 435-475 164-203 (455)
337 PRK08472 fliI flagellum-specif 97.6 3.8E-05 8.2E-10 79.1 3.2 41 435-476 146-186 (434)
338 PRK10416 signal recognition pa 97.6 2.9E-05 6.2E-10 77.4 2.1 34 445-478 112-145 (318)
339 PRK06936 type III secretion sy 97.6 8.1E-05 1.7E-09 76.6 5.4 39 435-474 151-189 (439)
340 cd01854 YjeQ_engC YjeQ/EngC. 97.6 5.1E-05 1.1E-09 74.8 3.7 41 437-478 152-192 (287)
341 TIGR02858 spore_III_AA stage I 97.6 5.7E-05 1.2E-09 73.4 3.7 31 448-478 112-142 (270)
342 cd03284 ABC_MutS1 MutS1 homolo 97.6 6.5E-05 1.4E-09 70.8 3.9 34 435-469 19-52 (216)
343 PRK06820 type III secretion sy 97.5 9.6E-05 2.1E-09 76.3 4.9 40 435-475 152-191 (440)
344 PRK14721 flhF flagellar biosyn 97.5 5.7E-05 1.2E-09 77.6 3.0 27 444-470 188-214 (420)
345 TIGR00025 Mtu_efflux ABC trans 97.5 0.053 1.1E-06 51.5 22.9 142 131-278 53-197 (232)
346 COG5265 ATM1 ABC-type transpor 97.4 0.00015 3.3E-09 72.8 4.7 61 404-478 260-320 (497)
347 PRK14722 flhF flagellar biosyn 97.4 7.7E-05 1.7E-09 75.5 2.7 37 435-471 125-161 (374)
348 TIGR01247 drrB daunorubicin re 97.4 0.057 1.2E-06 51.3 22.3 136 134-276 67-203 (236)
349 PRK00098 GTPase RsgA; Reviewed 97.4 0.00016 3.5E-09 71.6 4.2 33 446-478 163-195 (298)
350 cd03285 ABC_MSH2_euk MutS2 hom 97.3 0.00029 6.2E-09 66.7 5.3 34 435-468 18-51 (222)
351 TIGR02788 VirB11 P-type DNA tr 97.3 0.0001 2.2E-09 73.4 2.2 38 440-477 137-174 (308)
352 cd03280 ABC_MutS2 MutS2 homolo 97.3 0.0002 4.4E-09 66.6 4.0 29 448-476 29-65 (200)
353 TIGR00630 uvra excinuclease AB 97.3 0.00019 4.1E-09 80.8 4.2 30 436-465 622-651 (924)
354 PRK00635 excinuclease ABC subu 97.3 0.00024 5.2E-09 84.2 5.0 38 436-473 610-656 (1809)
355 COG3845 ABC-type uncharacteriz 97.3 0.00091 2E-08 68.6 8.2 62 403-478 254-315 (501)
356 TIGR00606 rad50 rad50. This fa 97.2 0.00027 5.9E-09 83.6 4.5 32 447-478 28-64 (1311)
357 PRK01889 GTPase RsgA; Reviewed 97.2 0.00023 4.9E-09 72.3 3.0 43 436-478 184-226 (356)
358 cd03286 ABC_MSH6_euk MutS6 hom 97.2 0.00048 1E-08 64.9 4.9 36 435-470 18-53 (218)
359 TIGR00767 rho transcription te 97.1 0.00096 2.1E-08 67.7 6.8 55 404-472 128-193 (415)
360 PRK00349 uvrA excinuclease ABC 97.1 0.0004 8.6E-09 78.5 4.4 32 436-467 624-655 (943)
361 TIGR01291 nodJ ABC-2 type tran 97.1 0.2 4.4E-06 48.3 22.5 136 136-278 81-217 (253)
362 TIGR00368 Mg chelatase-related 97.1 0.00026 5.6E-09 74.8 2.4 44 435-478 199-242 (499)
363 KOG0063 RNAse L inhibitor, ABC 97.1 0.00073 1.6E-08 68.0 5.4 42 436-477 351-397 (592)
364 PRK00635 excinuclease ABC subu 97.0 0.00047 1E-08 81.8 4.0 33 435-467 949-981 (1809)
365 PLN02796 D-glycerate 3-kinase 97.0 0.00016 3.5E-09 72.0 -0.1 39 436-474 81-127 (347)
366 PF03193 DUF258: Protein of un 97.0 0.00076 1.7E-08 60.1 4.0 31 446-476 34-64 (161)
367 COG1129 MglA ABC-type sugar tr 97.0 0.0012 2.6E-08 68.8 5.9 43 436-478 274-316 (500)
368 PRK08927 fliI flagellum-specif 96.9 0.00094 2E-08 68.9 4.9 39 436-474 147-185 (442)
369 PRK10463 hydrogenase nickel in 96.9 0.00072 1.6E-08 66.0 3.2 33 445-477 102-134 (290)
370 TIGR01248 drrC daunorubicin re 96.8 0.12 2.5E-06 45.8 16.9 135 136-277 11-148 (152)
371 TIGR00750 lao LAO/AO transport 96.8 0.00044 9.5E-09 68.6 0.9 38 435-472 22-59 (300)
372 TIGR01069 mutS2 MutS2 family p 96.7 0.00057 1.2E-08 76.0 1.4 38 439-476 313-352 (771)
373 cd03281 ABC_MSH5_euk MutS5 hom 96.6 0.0016 3.5E-08 61.2 3.7 32 437-468 19-50 (213)
374 KOG0062 ATPase component of AB 96.6 0.0013 2.8E-08 67.7 3.2 63 403-478 359-421 (582)
375 PRK06731 flhF flagellar biosyn 96.6 0.0017 3.7E-08 63.1 3.4 37 436-472 57-100 (270)
376 TIGR03861 phenyl_ABC_PedC alco 96.5 0.79 1.7E-05 44.0 22.9 138 135-277 80-220 (253)
377 TIGR03518 ABC_perm_GldF glidin 96.5 0.14 3.1E-06 49.0 15.9 99 133-232 69-173 (240)
378 KOG0063 RNAse L inhibitor, ABC 96.4 0.0024 5.1E-08 64.4 3.1 33 445-477 98-130 (592)
379 PRK15494 era GTPase Era; Provi 96.4 0.003 6.5E-08 63.8 3.7 37 435-471 33-76 (339)
380 TIGR02524 dot_icm_DotB Dot/Icm 96.3 0.0025 5.5E-08 64.6 3.0 30 445-474 132-161 (358)
381 TIGR03015 pepcterm_ATPase puta 96.3 0.00092 2E-08 65.0 -0.3 39 435-473 30-69 (269)
382 PLN03211 ABC transporter G-25; 96.3 0.59 1.3E-05 51.6 21.4 95 135-233 459-556 (659)
383 TIGR00150 HI0065_YjeE ATPase, 96.3 0.0036 7.8E-08 54.0 3.3 29 444-472 19-47 (133)
384 TIGR03499 FlhF flagellar biosy 96.3 0.0028 6.1E-08 62.3 2.9 29 445-473 192-220 (282)
385 PRK12727 flagellar biosynthesi 96.1 0.004 8.8E-08 65.4 3.0 28 444-471 347-374 (559)
386 TIGR00157 ribosome small subun 96.0 0.0052 1.1E-07 59.1 3.5 31 447-477 120-150 (245)
387 COG0842 ABC-type multidrug tra 96.0 1.2 2.7E-05 42.6 20.2 136 137-279 111-249 (286)
388 PLN02165 adenylate isopentenyl 96.0 0.0054 1.2E-07 61.0 3.4 27 446-472 42-68 (334)
389 PLN02318 phosphoribulokinase/u 96.0 0.005 1.1E-07 65.4 3.3 28 448-476 66-93 (656)
390 PRK11889 flhF flagellar biosyn 95.9 0.0051 1.1E-07 62.4 3.0 26 446-471 240-265 (436)
391 PRK09183 transposase/IS protei 95.9 0.0023 5.1E-08 62.0 0.6 35 435-470 91-125 (259)
392 TIGR00602 rad24 checkpoint pro 95.9 0.0034 7.4E-08 68.0 1.8 39 435-473 98-136 (637)
393 TIGR00955 3a01204 The Eye Pigm 95.9 0.4 8.8E-06 52.5 17.9 95 135-233 413-510 (617)
394 PRK12726 flagellar biosynthesi 95.9 0.0064 1.4E-07 61.5 3.5 31 441-471 200-230 (407)
395 PRK05703 flhF flagellar biosyn 95.9 0.0056 1.2E-07 63.6 3.0 29 444-472 218-246 (424)
396 PRK13477 bifunctional pantoate 95.8 0.011 2.3E-07 62.6 5.0 44 435-479 273-319 (512)
397 PF12679 ABC2_membrane_2: ABC- 95.7 1.1 2.4E-05 43.3 18.3 103 134-236 87-198 (277)
398 PRK14974 cell division protein 95.7 0.0054 1.2E-07 61.6 1.8 28 446-473 139-166 (336)
399 PLN03046 D-glycerate 3-kinase; 95.6 0.0076 1.6E-07 61.5 2.5 27 448-474 213-239 (460)
400 TIGR00064 ftsY signal recognit 95.6 0.006 1.3E-07 59.5 1.8 30 444-473 69-98 (272)
401 cd01858 NGP_1 NGP-1. Autoanti 95.6 0.013 2.7E-07 52.2 3.7 25 448-472 103-127 (157)
402 cd01878 HflX HflX subfamily. 95.6 0.012 2.5E-07 54.6 3.6 23 449-471 43-65 (204)
403 KOG0066 eIF2-interacting prote 95.5 0.015 3.3E-07 58.9 4.5 35 435-469 278-312 (807)
404 TIGR01420 pilT_fam pilus retra 95.5 0.0092 2E-07 60.4 3.1 34 444-477 119-153 (343)
405 PRK13851 type IV secretion sys 95.5 0.011 2.4E-07 59.6 3.4 35 443-477 158-192 (344)
406 PRK09866 hypothetical protein; 95.5 0.012 2.7E-07 62.9 3.8 27 449-475 71-98 (741)
407 COG1668 NatB ABC-type Na+ effl 95.4 1.1 2.4E-05 46.4 18.0 100 132-231 205-316 (407)
408 TIGR01526 nadR_NMN_Atrans nico 95.2 0.0074 1.6E-07 60.5 1.1 35 439-473 152-188 (325)
409 TIGR03062 pip_yhgE_Cterm YhgE/ 95.2 1.7 3.6E-05 40.3 17.0 128 137-277 44-172 (208)
410 TIGR03819 heli_sec_ATPase heli 95.2 0.015 3.2E-07 58.7 3.2 35 444-478 175-209 (340)
411 PRK10246 exonuclease subunit S 95.1 0.015 3.3E-07 67.3 3.6 38 437-474 19-58 (1047)
412 KOG0065 Pleiotropic drug resis 95.1 0.023 5.1E-07 65.0 4.5 41 433-473 127-167 (1391)
413 PRK12288 GTPase RsgA; Reviewed 94.8 0.019 4.1E-07 58.0 2.7 31 447-477 205-235 (347)
414 PRK13898 type IV secretion sys 94.7 0.032 6.9E-07 63.0 4.7 39 440-478 439-477 (800)
415 PRK12289 GTPase RsgA; Reviewed 94.7 0.028 6.1E-07 56.8 3.8 30 447-476 172-201 (352)
416 PTZ00035 Rad51 protein; Provis 94.7 0.02 4.2E-07 57.8 2.5 30 443-472 114-143 (337)
417 COG1162 Predicted GTPases [Gen 94.5 0.027 5.9E-07 55.0 2.8 32 445-476 162-193 (301)
418 COG1419 FlhF Flagellar GTP-bin 94.4 0.029 6.2E-07 57.0 3.0 33 437-471 195-227 (407)
419 cd01882 BMS1 Bms1. Bms1 is an 94.3 0.038 8.2E-07 52.4 3.4 28 444-471 36-63 (225)
420 cd02019 NK Nucleoside/nucleoti 94.3 0.037 8E-07 41.9 2.7 22 450-471 2-23 (69)
421 PRK12723 flagellar biosynthesi 94.1 0.042 9.1E-07 56.3 3.5 27 446-472 173-199 (388)
422 PTZ00202 tuzin; Provisional 94.0 0.029 6.3E-07 57.6 2.1 35 435-471 276-310 (550)
423 COG0552 FtsY Signal recognitio 94.0 0.037 8E-07 54.6 2.7 24 448-471 140-163 (340)
424 PLN03210 Resistant to P. syrin 94.0 0.027 5.8E-07 66.2 2.0 31 440-470 200-230 (1153)
425 PRK09435 membrane ATPase/prote 93.9 0.028 6.1E-07 56.3 1.7 25 448-472 57-81 (332)
426 PF12730 ABC2_membrane_4: ABC- 93.8 4.9 0.00011 36.7 16.8 96 137-233 70-173 (232)
427 cd01122 GP4d_helicase GP4d_hel 93.8 0.09 2E-06 51.1 5.0 36 435-470 18-53 (271)
428 PRK12724 flagellar biosynthesi 93.6 0.058 1.3E-06 55.4 3.5 26 446-471 222-247 (432)
429 KOG4181 Uncharacterized conser 93.6 0.053 1.2E-06 53.4 2.9 23 448-470 189-211 (491)
430 TIGR02239 recomb_RAD51 DNA rep 93.4 0.038 8.1E-07 55.2 1.6 41 436-476 84-127 (316)
431 TIGR03185 DNA_S_dndD DNA sulfu 93.3 0.06 1.3E-06 59.3 3.2 21 448-468 29-49 (650)
432 TIGR02903 spore_lon_C ATP-depe 93.1 0.067 1.5E-06 58.4 3.2 33 445-477 173-205 (615)
433 cd01853 Toc34_like Toc34-like 93.0 0.097 2.1E-06 50.4 3.8 24 449-472 33-56 (249)
434 cd01129 PulE-GspE PulE/GspE Th 92.8 0.098 2.1E-06 50.8 3.5 28 445-472 78-105 (264)
435 KOG3905 Dynein light intermedi 92.7 0.12 2.5E-06 50.7 3.7 33 445-477 50-82 (473)
436 cd01849 YlqF_related_GTPase Yl 92.6 0.14 3.1E-06 45.3 4.0 27 446-472 99-125 (155)
437 cd01857 HSR1_MMR1 HSR1/MMR1. 92.5 0.2 4.3E-06 43.6 4.8 25 449-473 85-109 (141)
438 cd00009 AAA The AAA+ (ATPases 92.5 0.1 2.2E-06 44.5 2.9 27 446-472 18-44 (151)
439 TIGR00416 sms DNA repair prote 92.2 0.076 1.6E-06 55.8 2.0 42 436-477 82-124 (454)
440 PF02367 UPF0079: Uncharacteri 92.1 0.11 2.4E-06 44.1 2.5 25 445-469 13-37 (123)
441 PRK00409 recombination and DNA 92.0 0.13 2.8E-06 57.7 3.6 30 438-468 319-348 (782)
442 COG1157 FliI Flagellar biosynt 92.0 0.18 3.9E-06 51.3 4.2 37 435-472 152-188 (441)
443 TIGR02533 type_II_gspE general 91.8 0.17 3.7E-06 53.6 4.1 27 446-472 241-267 (486)
444 PF00488 MutS_V: MutS domain V 91.8 0.19 4.1E-06 48.0 4.0 33 436-468 32-64 (235)
445 COG3910 Predicted ATPase [Gene 91.7 0.15 3.3E-06 46.3 3.0 21 448-468 38-58 (233)
446 PF03215 Rad17: Rad17 cell cyc 91.7 0.13 2.7E-06 54.9 2.9 26 447-472 45-70 (519)
447 PF13245 AAA_19: Part of AAA d 91.6 0.16 3.6E-06 39.2 2.7 22 446-467 9-31 (76)
448 TIGR01425 SRP54_euk signal rec 91.6 0.15 3.2E-06 52.9 3.1 23 447-469 100-122 (429)
449 smart00763 AAA_PrkA PrkA AAA d 91.5 0.15 3.2E-06 51.5 3.0 26 447-472 78-103 (361)
450 cd01121 Sms Sms (bacterial rad 91.4 0.097 2.1E-06 53.4 1.7 35 443-477 78-112 (372)
451 TIGR02782 TrbB_P P-type conjug 91.4 0.12 2.6E-06 51.2 2.2 30 444-473 129-158 (299)
452 PRK08154 anaerobic benzoate ca 91.2 0.19 4.1E-06 50.1 3.5 27 444-470 130-156 (309)
453 PRK13894 conjugal transfer ATP 91.1 0.16 3.4E-06 50.8 2.8 28 443-470 144-171 (319)
454 PRK10787 DNA-binding ATP-depen 91.1 0.14 3E-06 57.4 2.7 29 446-474 348-376 (784)
455 PRK08099 bifunctional DNA-bind 90.4 0.22 4.8E-06 51.4 3.2 24 448-471 220-243 (399)
456 PRK13853 type IV secretion sys 90.3 0.29 6.4E-06 55.2 4.4 24 449-472 428-451 (789)
457 PRK12608 transcription termina 90.2 0.27 5.8E-06 49.9 3.5 34 436-470 123-156 (380)
458 PLN02200 adenylate kinase fami 90.1 0.2 4.3E-06 47.8 2.4 34 444-477 40-76 (234)
459 COG0178 UvrA Excinuclease ATPa 90.1 0.24 5.1E-06 54.4 3.2 30 436-465 616-645 (935)
460 PRK05399 DNA mismatch repair p 89.8 0.25 5.5E-06 56.0 3.4 32 436-468 597-628 (854)
461 KOG1970 Checkpoint RAD17-RFC c 89.7 0.23 4.9E-06 52.1 2.6 28 446-473 109-136 (634)
462 PRK15066 inner membrane transp 89.6 20 0.00043 34.4 22.0 135 135-277 82-218 (257)
463 PF00437 T2SE: Type II/IV secr 89.4 0.16 3.5E-06 49.4 1.2 35 440-474 120-154 (270)
464 PRK13900 type IV secretion sys 89.4 0.27 5.8E-06 49.5 2.8 31 444-474 157-187 (332)
465 COG4962 CpaF Flp pilus assembl 89.1 0.38 8.2E-06 47.9 3.5 27 449-475 175-201 (355)
466 PRK10646 ADP-binding protein; 89.1 0.4 8.6E-06 42.4 3.3 26 444-469 25-50 (153)
467 PRK12597 F0F1 ATP synthase sub 89.0 0.3 6.5E-06 51.1 2.9 35 436-471 133-167 (461)
468 KOG0061 Transporter, ABC super 89.0 11 0.00025 41.2 15.2 95 137-233 412-507 (613)
469 PF03379 CcmB: CcmB protein; 88.8 21 0.00045 33.5 15.4 86 135-223 66-152 (215)
470 cd04178 Nucleostemin_like Nucl 88.8 0.42 9.1E-06 43.2 3.4 25 448-472 118-142 (172)
471 TIGR03156 GTP_HflX GTP-binding 88.8 0.36 7.7E-06 49.0 3.3 23 449-471 191-213 (351)
472 PLN02772 guanylate kinase 88.8 0.43 9.4E-06 48.7 3.8 26 448-473 136-161 (398)
473 PTZ00361 26 proteosome regulat 88.7 0.29 6.3E-06 51.0 2.6 29 445-473 215-243 (438)
474 PF05049 IIGP: Interferon-indu 88.7 0.41 8.8E-06 48.7 3.5 29 450-478 38-66 (376)
475 PF03308 ArgK: ArgK protein; 88.7 0.37 8E-06 46.2 3.0 22 448-469 30-51 (266)
476 PRK10867 signal recognition pa 88.4 0.43 9.4E-06 49.7 3.6 24 447-470 100-123 (433)
477 PRK12298 obgE GTPase CgtA; Rev 88.2 0.72 1.6E-05 47.5 5.0 34 439-472 151-184 (390)
478 cd01859 MJ1464 MJ1464. This f 88.1 0.67 1.5E-05 40.8 4.2 23 449-471 103-125 (156)
479 cd01856 YlqF YlqF. Proteins o 88.0 0.6 1.3E-05 42.0 3.9 24 448-471 116-139 (171)
480 cd01855 YqeH YqeH. YqeH is an 88.0 0.43 9.4E-06 43.6 3.0 25 446-470 126-150 (190)
481 PRK12299 obgE GTPase CgtA; Rev 88.0 0.49 1.1E-05 47.7 3.6 32 439-470 150-181 (335)
482 PRK09376 rho transcription ter 87.9 0.46 1E-05 48.5 3.3 31 439-469 161-191 (416)
483 TIGR01039 atpD ATP synthase, F 87.9 0.39 8.4E-06 50.0 2.9 33 436-469 133-165 (461)
484 cd01379 MYSc_type_III Myosin m 87.8 0.38 8.3E-06 52.8 3.0 29 443-471 82-110 (653)
485 COG3451 VirB4 Type IV secretor 87.5 0.4 8.7E-06 53.8 2.9 21 449-469 438-458 (796)
486 TIGR00450 mnmE_trmE_thdF tRNA 87.2 0.49 1.1E-05 49.6 3.2 26 445-470 201-226 (442)
487 TIGR02729 Obg_CgtA Obg family 86.9 0.58 1.3E-05 47.0 3.4 34 438-471 148-181 (329)
488 TIGR00991 3a0901s02IAP34 GTP-b 86.8 0.54 1.2E-05 46.5 3.1 23 449-471 40-62 (313)
489 KOG0979 Structural maintenance 86.8 0.38 8.3E-06 53.5 2.2 17 452-468 47-63 (1072)
490 TIGR02525 plasmid_TraJ plasmid 86.7 0.46 9.9E-06 48.5 2.6 27 446-472 148-174 (372)
491 PRK09280 F0F1 ATP synthase sub 86.7 0.48 1E-05 49.5 2.7 33 436-469 134-166 (463)
492 PRK11058 GTPase HflX; Provisio 86.6 0.57 1.2E-05 48.8 3.3 22 449-470 199-220 (426)
493 PRK13830 conjugal transfer pro 86.6 0.85 1.8E-05 51.7 4.9 34 440-473 449-482 (818)
494 PRK13833 conjugal transfer pro 86.5 0.43 9.2E-06 47.7 2.2 26 446-471 143-168 (323)
495 cd01132 F1_ATPase_alpha F1 ATP 86.3 0.5 1.1E-05 45.9 2.5 34 437-470 59-93 (274)
496 PRK15455 PrkA family serine pr 86.2 0.55 1.2E-05 50.2 2.9 31 436-469 95-125 (644)
497 KOG2373 Predicted mitochondria 86.2 0.15 3.3E-06 50.4 -1.2 31 435-465 261-291 (514)
498 PRK00771 signal recognition pa 86.1 0.67 1.4E-05 48.3 3.5 26 446-471 94-119 (437)
499 CHL00189 infB translation init 86.0 0.65 1.4E-05 51.5 3.4 25 446-470 243-267 (742)
500 COG0802 Predicted ATPase or ki 85.9 0.77 1.7E-05 40.2 3.2 24 445-468 23-46 (149)
No 1
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.7e-65 Score=590.73 Aligned_cols=442 Identities=23% Similarity=0.347 Sum_probs=336.9
Q ss_pred CCCCceeecCCHHHHHHHHHh--CCCcccEEEEeeCCC------CCeeEEEEEEcCccc--c--------CCCCC----C
Q 011717 9 IPSSKVMSFRTAAEVDDWLYS--NPMRCPGALHFVDRN------ATTISYGIQTNSTPI--E--------MRGRY----E 66 (479)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~av~F~~~~------~~~~~Y~i~~n~~~~--~--------~~~~~----~ 66 (479)
+..|++++++||++|++..+. +.+.++|||+|++.. +.+++|+||+|.+.. . ..++. .
T Consensus 520 ~~~d~~~~~~~~~~~~~~~~~l~~~~~~~agI~F~~~~~~~~~~p~~v~y~IR~~~~~~~~t~~~~~~~w~~g~~~~~~~ 599 (2272)
T TIGR01257 520 LVLDKFESYDDEVQLTQRALSLLEENRFWAGVVFPDMYPWTSSLPPHVKYKIRMDIDVVEKTNKIKDRYWDSGPRADPVE 599 (2272)
T ss_pred eeccceecCCCHHHHHHHHHHHhhcCCeEEEEEeCCCcccccCCCCceEEEEecCccccCcchhhccccccCCCCCCccc
Confidence 467899999999999997743 556789999997652 367999999997732 1 11222 2
Q ss_pred CCCcc--chhHHHHHHHHHHHHHHhCCCCcceeeeeeccCCCCchhH---HHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011717 67 DPTFK--FQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIF---SAVARIGPTFFLAVAMFGFVFQISSLVTEK 141 (479)
Q Consensus 67 ~~~~~--~~l~lq~ai~~ai~~~~~~~~~~~~~~~~~~~p~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~iV~EK 141 (479)
||.|+ .|+++|++||+||++..++.. ....+..++||+|++... ..+...+|+++++++++++..+++.+|.||
T Consensus 600 ~~~Y~~~GFl~lQ~ai~~aii~~~~~~~-~~~~v~~q~~P~P~y~~d~~l~~~~~~~pl~~~la~~~~~~~lv~~iV~EK 678 (2272)
T TIGR01257 600 DFRYIWGGFAYLQDMVEQGITRSQMQAE-PPVGIYLQQMPYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEK 678 (2272)
T ss_pred cccHHHhhHHHHHHHHHHHHHHhhcCCC-cccceeeeeCCCCCeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34453 489999999999999877532 345688999999998643 345678899999999999999999999999
Q ss_pred HHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011717 142 ELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFIS 221 (479)
Q Consensus 142 e~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~g~s~i~~~~~~S~fF~ 221 (479)
|+|+||.|+||||++++||+|||+..++.+++++++++++.. ...+|..+++.++|+++++|++++|++||++|+||+
T Consensus 679 E~rlKE~MkiMGL~~~~~w~sWfi~~~~~~~i~~~l~~~il~--~~~~~~~s~~~~lfl~~~~y~~s~I~~~fliS~fFs 756 (2272)
T TIGR01257 679 ELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIM--HGRILHYSDPFILFLFLLAFSTATIMQCFLLSTFFS 756 (2272)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCceeecCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999988887766554432 345788899999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHhhccccCcccchhhhhhheecChHHHHHHHHHHHHhcCCCCCcccccccCccCCCCC
Q 011717 222 KSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPND 301 (479)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 301 (479)
++++|+.++.+++++.+++..+. +.+.+..+...++++|++||.+|+.|+..++..+ .++.|++|+++...+..+
T Consensus 757 ka~~A~~~~~li~f~~~lp~~~~---~~~~~~~~~~~~~~~sL~sp~af~~g~~~i~~~e--~~~~G~~w~n~~~~~~~~ 831 (2272)
T TIGR01257 757 KASLAAACSGVIYFTLYLPHILC---FAWQDRMTADLKTAVSLLSPVAFGFGTEYLVRFE--EQGLGLQWSNIGNSPLEG 831 (2272)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH---hhcccccCHHHHHHHHhcCHHHHHHHHHHHHHHh--hhCCCcccccccccccCC
Confidence 99999999888877766554321 1223344556778889999999999999998864 457789999987654322
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcccccccccccCCCCCCccccCccccccCCCCCCCCCCCC
Q 011717 302 TECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPD 381 (479)
Q Consensus 302 ~~~~~~~~~~~~~l~~~~~ly~lL~~yld~v~p~~~g~~~~~~f~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (479)
+ .++++..+.||++|+++|++|+||+|+|+|++||++|||+|+++++||+++.+....... .....+...++
T Consensus 832 d--~~s~~~~~~ml~~d~~lY~lL~~Yld~V~PgeyG~~kpw~F~~~~syW~~~~~~~~~~~~------~~~~~~~~~~~ 903 (2272)
T TIGR01257 832 D--EFSFLLSMKMMLLDAALYGLLAWYLDQVFPGDYGTPLPWYFLLQESYWLGGEGCSTREER------ALEKTEPLTEE 903 (2272)
T ss_pred C--CccHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCcccccchhhhcCCccccccccc------ccccccccccc
Confidence 2 367888899999999999999999999999999999999999999999764321100000 00000000000
Q ss_pred ChhhHHHHHHHHhhhhcCCCCCCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHH
Q 011717 382 DEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKT 461 (479)
Q Consensus 382 d~dv~~e~~~~~~~~~~~~~~~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKT 461 (479)
.+|...++.......++++.+....++++||+|.|+++ .+.||+|+||++++|||++|+||||||||
T Consensus 904 ~~~~~~~~~~~~~~~E~~~~~~~~~L~I~nLsK~y~~~-------------~k~aL~~lsl~I~~Gei~aLLG~NGAGKS 970 (2272)
T TIGR01257 904 MEDPEHPEGINDSFFERELPGLVPGVCVKNLVKIFEPS-------------GRPAVDRLNITFYENQITAFLGHNGAGKT 970 (2272)
T ss_pred cccccccccccccccccccCCCCceEEEEeEEEEecCC-------------CceEEEeeEEEEcCCcEEEEECCCCChHH
Confidence 00100000000001112223346789999999999532 12699999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCcccC
Q 011717 462 TTISCLTGITPVTGGDGC 479 (479)
Q Consensus 462 Tt~~mLtG~~~pTsG~a~ 479 (479)
|+++||+|+.+||+|+++
T Consensus 971 TLLkiLaGLl~PtsG~I~ 988 (2272)
T TIGR01257 971 TTLSILTGLLPPTSGTVL 988 (2272)
T ss_pred HHHHHHhcCCCCCceEEE
Confidence 999999999999999874
No 2
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=7.2e-42 Score=396.64 Aligned_cols=354 Identities=20% Similarity=0.278 Sum_probs=241.7
Q ss_pred hhHHH-HHHHHHHHHHHhCCC----CcceeeeeeccCCCCchhHH------HHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011717 73 QIPLQ-LAAEREIARSLVGDP----NFSWVVGLKEFAHPPGEIFS------AVARIGPTFFLAVAMFGFVFQISSLVTEK 141 (479)
Q Consensus 73 ~l~lq-~ai~~ai~~~~~~~~----~~~~~~~~~~~p~p~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~iV~EK 141 (479)
.+|+- +.+++||++...++. +..+++.++|+|....+... .......+++++...+..+.++..+|+||
T Consensus 1626 s~p~~lN~l~NaiLr~~~~~~~~~~~~~I~v~N~Plp~t~~~~~~~~~~~~~~~~~iai~ii~~~sfi~asfv~~~V~ER 1705 (2272)
T TIGR01257 1626 ALVSFLNVAHNAILRASLPKDRDPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFAMSFVPASFVLYLIQER 1705 (2272)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCccceEEEEecCCCCchhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHheeeehHH
Confidence 34443 667899999865422 35778888888876433111 11111122222222222234455689999
Q ss_pred HHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-CchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011717 142 ELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLN-NSFAVLFLLFFLFELNMTGFAFMFSAFI 220 (479)
Q Consensus 142 e~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~-~~~~~l~ll~~l~g~s~i~~~~~~S~fF 220 (479)
++|+||+|.++|++..+||+|+|+||++.|++++++++++..+++...|.. .+++.+++++++||+|.++++|++|++|
T Consensus 1706 ~skaK~lQ~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~~~~~l~~~~lll~lyG~a~ip~tYl~SflF 1785 (2272)
T TIGR01257 1706 VNKAKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFLF 1785 (2272)
T ss_pred hhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999888888888766654 5777888999999999999999999999
Q ss_pred CCchhhhHHHHHH-HHHHHHHHHHHhh-cc-cc---CcccchhhhhhheecChHHHHHHHHHHHHhcCCCCCcccccccC
Q 011717 221 SKSSSSTTIGFSV-FIVGFLTQLVTAF-GF-PY---SDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRR 294 (479)
Q Consensus 221 ~~~~~a~~~~~~~-~~~~~~~~~~~~~-~~-~~---~~~~~~~~~~~~~l~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 294 (479)
+++.+|.+...++ +++|++..++..+ .. .. ....+..+++++.++|++|++.|+..++.......... .....
T Consensus 1786 ~~~~~A~~~~~~in~~~G~~~~i~~~il~~~~~~~~~~~~~~~l~~if~i~P~f~lg~gl~~l~~~~~~~~~~~-~~~~~ 1864 (2272)
T TIGR01257 1786 DVPSTAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGLIDLALSQAVTDVYA-QFGEE 1864 (2272)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHeeCchhhhHHHHHHHHHhHHHHHHHH-hhccc
Confidence 9999997654433 3444433322211 11 00 01234577888999999999999999876431100000 00000
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcccccccccccCCCCCCccccCccccccCCCCC
Q 011717 295 AECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPP 374 (479)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~l~~~~~ly~lL~~yld~v~p~~~g~~~~~~f~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 374 (479)
....+.. +. ..+..+++|++++++|+++.+++|+-.. + +-|.... .
T Consensus 1865 ~~~~~~~--~~-~~g~~ll~m~~~~iv~flLl~~ie~~~~-----~---------~~~~~~~-----------------~ 1910 (2272)
T TIGR01257 1865 HSANPFQ--WD-LIGKNLVAMAVEGVVYFLLTLLIQHHFF-----L---------SRWIAEP-----------------A 1910 (2272)
T ss_pred ccCCccc--hh-hccHHHHHHHHHHHHHHHHHHHHHhhhh-----h---------hhhcccc-----------------C
Confidence 0000000 11 1234567788999999999999985210 0 0111110 0
Q ss_pred CCCCCCCChhhHHHHHHHHhhhhcCCCCCCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEEC
Q 011717 375 MEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLG 454 (479)
Q Consensus 375 ~~~~~~~d~dv~~e~~~~~~~~~~~~~~~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG 454 (479)
.+...+||+||.+|+.++.+.. ..+..++++||+|.|+++ ++.||+|+||+|++|||+||||
T Consensus 1911 ~~~~~~eD~DV~~Er~rV~~~~-----~~~~~L~v~nLsK~Y~~~-------------~~~aL~~ISf~I~~GEi~gLLG 1972 (2272)
T TIGR01257 1911 KEPIFDEDDDVAEERQRIISGG-----NKTDILRLNELTKVYSGT-------------SSPAVDRLCVGVRPGECFGLLG 1972 (2272)
T ss_pred cCcCCCchhHHHHHHHHHhccC-----CCCceEEEEEEEEEECCC-------------CceEEEeeEEEEcCCcEEEEEC
Confidence 0112358999999999886431 124579999999999532 1269999999999999999999
Q ss_pred CCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 455 PNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 455 ~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
+||||||||++||+|+.+||+|+++
T Consensus 1973 ~NGAGKTTLlkmL~Gll~ptsG~I~ 1997 (2272)
T TIGR01257 1973 VNGAGKTTTFKMLTGDTTVTSGDAT 1997 (2272)
T ss_pred CCCCcHHHHHHHHhCCCCCCccEEE
Confidence 9999999999999999999999874
No 3
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=2.5e-35 Score=328.49 Aligned_cols=355 Identities=24% Similarity=0.284 Sum_probs=217.8
Q ss_pred HHHHHHHHHHHHhCCCCcceeeeeeccCCCCchh-HHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCc
Q 011717 77 QLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEI-FSA-VARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGL 154 (479)
Q Consensus 77 q~ai~~ai~~~~~~~~~~~~~~~~~~~p~p~~~~-~~~-~~~~~~~~~~~~~~~~~~~~v~~iV~EKe~klke~m~~mGl 154 (479)
....++++.+...+.. +.+.+++.|.+.... .+. .....+.+++....+.+...+..+|.||+.|+||.|+++|+
T Consensus 260 ~~~~~n~l~~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~e~~~~~~~~~~i~G~ 336 (885)
T KOG0059|consen 260 LGLGSNALRRALNLSG---ISVLNEPMPLSGAQLSLDLLADLLGALFLLFVFLLLFSVFLLSLILERQQRLRHQQLIAGL 336 (885)
T ss_pred cchHHHHHHHhhcccc---ceeeecCcCccHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHhCC
Confidence 4445677777653322 455555666554332 223 33455555555555556667778899999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHH
Q 011717 155 YDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVF 234 (479)
Q Consensus 155 ~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~g~s~i~~~~~~S~fF~~~~~a~~~~~~~~ 234 (479)
++.+||+++++||++.+++.++++.+++.+++ ++...+..++++++++|+++.++++|+.|++|+++.++.+...+..
T Consensus 337 ~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f~--~~~~~~~~~~~~~~~l~~~s~i~l~y~~s~~f~~~~~~~v~~~i~~ 414 (885)
T KOG0059|consen 337 SPSTYWLFALVWDLLLYLLILLILLIFVLIFG--FFAGNNTVIILLLLLLYIRSAIPLTYILSFIFSKESTASVILSIYN 414 (885)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhheee--cccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCceeehhhHH
Confidence 99999999999999999999998888888877 5666788899999999999999999999999999999887665554
Q ss_pred HHHHHHHHHHhhccccCcccchhhhhhheecChHHHHHHHHHHHHhcCC---CCCcccccccCccCCCCCCccc---c-c
Q 011717 235 IVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATET---PQDIGISWSRRAECAPNDTECV---I-T 307 (479)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~-~ 307 (479)
+++.+...+......+.............+.|++.+......+.....+ ....+..|++...+........ . .
T Consensus 415 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (885)
T KOG0059|consen 415 LISGLLVFFAVFILQSFANGRTGDIFSMILVPGFTLFLPLYELSSLAAEGNLNLNDGMSLEVLGNDESFYTLLLEWLLPL 494 (885)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhhhhhhhcccccccchhHHHHHHH
Confidence 4332222111111122222222233333344554444333333221111 1233455655443210000000 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcccccccccccCCCCCCccccCccccccCCCCCCCCCCCCChhhHH
Q 011717 308 INDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLE 387 (479)
Q Consensus 308 ~~~~~~~l~~~~~ly~lL~~yld~v~p~~~g~~~~~~f~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dv~~ 387 (479)
....+..+....+.+.++...+ +..+.++.....+. ..+..+....||+||.+
T Consensus 495 ~~~~~~~~~~~~~~~~~f~~l~-------------------~~~~~~~~~~~~~~--------~~~~~~~~~~e~~~v~~ 547 (885)
T KOG0059|consen 495 IGRRYLALVTEGVKDDLFFLLI-------------------FVPFKRRMRALTQN--------MLKGFEPVEVEKLDVAR 547 (885)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------------------hhhhcccccccccc--------ccCCCcCcchhhHHHHH
Confidence 0111112222223332222221 11111111000000 01112234557788888
Q ss_pred HHHHHHhhhhcCCCCCCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHH
Q 011717 388 EENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467 (479)
Q Consensus 388 e~~~~~~~~~~~~~~~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mL 467 (479)
|+.++...... .....++++++|+|.|+.. + .|||++|++|++|||||||||||||||||++||
T Consensus 548 e~~~v~~~~~~--~~~~~~~~~~~L~k~y~~~-----------~---~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~ml 611 (885)
T KOG0059|consen 548 ERNRVETLLFR--SSYSSALVLNNLSKVYGGK-----------D---GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKML 611 (885)
T ss_pred HHHhhhhhhhc--ccccceEEEcceeeeecch-----------h---hhhcceEEEecCCceEEEecCCCCCchhhHHHH
Confidence 87655443221 1224789999999999542 1 199999999999999999999999999999999
Q ss_pred hCCCCCCCcccC
Q 011717 468 TGITPVTGGDGC 479 (479)
Q Consensus 468 tG~~~pTsG~a~ 479 (479)
||+.+||+|+|+
T Consensus 612 tG~~~~t~G~a~ 623 (885)
T KOG0059|consen 612 TGETKPTSGEAL 623 (885)
T ss_pred hCCccCCcceEE
Confidence 999999999985
No 4
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.73 E-value=2.1e-18 Score=158.41 Aligned_cols=58 Identities=38% Similarity=0.661 Sum_probs=54.2
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+.+++++|+|++. .||||+||.|++||+|||||||||||||||+||.|+++||+|.+
T Consensus 2 ~L~ie~vtK~Fg~k---------------~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I 59 (300)
T COG4152 2 ALEIEGVTKSFGDK---------------KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI 59 (300)
T ss_pred ceEEecchhccCce---------------eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceE
Confidence 47899999999642 79999999999999999999999999999999999999999975
No 5
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.69 E-value=1.9e-18 Score=154.37 Aligned_cols=60 Identities=27% Similarity=0.473 Sum_probs=54.9
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
..+.+++|.|.|+++ .+|+++||.|++|||.||||||||||||+|.|++|+.+|++|.++
T Consensus 3 ~~L~a~~l~K~y~kr---------------~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ 62 (243)
T COG1137 3 STLVAENLAKSYKKR---------------KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKIL 62 (243)
T ss_pred cEEEehhhhHhhCCe---------------eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEE
Confidence 358899999999542 589999999999999999999999999999999999999999863
No 6
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.68 E-value=1.2e-17 Score=154.50 Aligned_cols=60 Identities=33% Similarity=0.578 Sum_probs=55.2
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
..+++++|+|.|++- +||||+||+|++||++||+|||||||||+||+|||.++||+|+++
T Consensus 3 ~lL~v~~l~k~FGGl---------------~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~ 62 (250)
T COG0411 3 PLLEVRGLSKRFGGL---------------TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVI 62 (250)
T ss_pred ceeeeccceeecCCE---------------EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEE
Confidence 357799999999652 799999999999999999999999999999999999999999863
No 7
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.66 E-value=2.5e-17 Score=147.38 Aligned_cols=59 Identities=24% Similarity=0.414 Sum_probs=54.0
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
+.+.+|+|.|+.. +.||+|+||.+++|||+||||+|||||||+++||.+++.||+|.++
T Consensus 2 l~v~~l~K~y~~~--------------v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~ 60 (245)
T COG4555 2 LEVTDLTKSYGSK--------------VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60 (245)
T ss_pred eeeeehhhhccCH--------------HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEE
Confidence 6788999999642 2599999999999999999999999999999999999999999874
No 8
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.63 E-value=3.6e-16 Score=153.93 Aligned_cols=60 Identities=37% Similarity=0.658 Sum_probs=54.7
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..+.+++|+|.|+++ +.||+|+||++++||++|||||||||||||++||+|+..||+|++
T Consensus 3 ~~i~~~~l~k~~~~~--------------~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i 62 (293)
T COG1131 3 EVIEVRNLTKKYGGD--------------KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62 (293)
T ss_pred ceeeecceEEEeCCC--------------CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence 357889999999631 269999999999999999999999999999999999999999986
No 9
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.63 E-value=1.7e-16 Score=148.21 Aligned_cols=73 Identities=32% Similarity=0.455 Sum_probs=57.0
Q ss_pred eEEEecceEEcCCCCc-ccccc-----ccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRK-IGCCC-----KCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~-~~~~~-----~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+.++||+|.|.-.-+ .|... ..+|++...||.|+||.+++||+.|+||+||||||||+|||||++.||+|.+
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v 81 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV 81 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeE
Confidence 5677888888853211 01000 1134456779999999999999999999999999999999999999999975
No 10
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.60 E-value=2.4e-13 Score=158.97 Aligned_cols=63 Identities=25% Similarity=0.297 Sum_probs=54.6
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC---CCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~---pTsG~a 478 (479)
..++++||++.|+.+ ++.+.+++|+|+.+++||++||+|+|||||||++++|+|..+ |++|++
T Consensus 758 ~~l~~~nl~~~~~~~-----------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I 823 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIK-----------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDR 823 (1394)
T ss_pred ceEEEEeeEEEecCC-----------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEE
Confidence 458999999999532 112369999999999999999999999999999999999987 788986
No 11
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.59 E-value=1.5e-15 Score=150.68 Aligned_cols=60 Identities=35% Similarity=0.597 Sum_probs=55.4
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
..+++++|+|.|++. .|++|+||+|++|||+||+||||||||||+++|+|+.+|++|+++
T Consensus 6 ~~i~i~~l~k~~~~~---------------~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~ 65 (306)
T PRK13537 6 APIDFRNVEKRYGDK---------------LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65 (306)
T ss_pred ceEEEEeEEEEECCe---------------EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 479999999999532 699999999999999999999999999999999999999999863
No 12
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.58 E-value=2.4e-15 Score=151.08 Aligned_cols=60 Identities=35% Similarity=0.619 Sum_probs=55.6
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
...++++||+|.|++. .|++|+||+|++||++||+||||||||||+++|+|+++|++|++
T Consensus 39 ~~~i~i~nl~k~y~~~---------------~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i 98 (340)
T PRK13536 39 TVAIDLAGVSKSYGDK---------------AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98 (340)
T ss_pred ceeEEEEEEEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEE
Confidence 4579999999999532 59999999999999999999999999999999999999999986
No 13
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.56 E-value=6.5e-15 Score=136.55 Aligned_cols=73 Identities=26% Similarity=0.397 Sum_probs=57.0
Q ss_pred eEEEecceEEcCCCCc---------cccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717 406 AVQIRGLVKTFPGTRK---------IGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~---------~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG 476 (479)
.|+++|++|.|+-... .+.+...++...+.|+||+||++++||.+||+|||||||||++++|+|.++||+|
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G 82 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG 82 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCc
Confidence 5777888888754310 0000001234577899999999999999999999999999999999999999999
Q ss_pred cc
Q 011717 477 DG 478 (479)
Q Consensus 477 ~a 478 (479)
++
T Consensus 83 ~v 84 (249)
T COG1134 83 KV 84 (249)
T ss_pred eE
Confidence 86
No 14
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.54 E-value=5.9e-15 Score=151.39 Aligned_cols=61 Identities=33% Similarity=0.626 Sum_probs=56.5
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
.+.+++++++|.|++ ++|++|+||++++|||.+|+|.|||||||++|+|+|.++||+|+++
T Consensus 6 ~~ll~~~~i~K~Fgg---------------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~ 66 (500)
T COG1129 6 PPLLELRGISKSFGG---------------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEIL 66 (500)
T ss_pred cceeeeecceEEcCC---------------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEE
Confidence 457899999999965 3799999999999999999999999999999999999999999863
No 15
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.54 E-value=8.5e-15 Score=145.06 Aligned_cols=61 Identities=31% Similarity=0.597 Sum_probs=56.3
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
...+++++++|.|++ +.||+|+||+|++||+++||||+|+||||+++||+|+..||+|+++
T Consensus 3 ~~~l~i~~v~k~yg~---------------~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~ 63 (352)
T COG3842 3 KPALEIRNVSKSFGD---------------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL 63 (352)
T ss_pred CceEEEEeeeeecCC---------------eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 457999999999963 2799999999999999999999999999999999999999999863
No 16
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.52 E-value=1.4e-14 Score=143.74 Aligned_cols=58 Identities=31% Similarity=0.566 Sum_probs=53.7
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+++++++|.|++. .|++|+||++++|||+||+|||||||||+++||+|+.+|++|++
T Consensus 2 ~l~~~~l~~~~~~~---------------~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i 59 (301)
T TIGR03522 2 SIRVSSLTKLYGTQ---------------NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSV 59 (301)
T ss_pred EEEEEEEEEEECCE---------------EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 37899999999532 59999999999999999999999999999999999999999986
No 17
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.52 E-value=1.2e-14 Score=146.47 Aligned_cols=61 Identities=34% Similarity=0.581 Sum_probs=56.6
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
...+.+++++|.|++ ++|.||+||+|++|||.+|||.|||||||++|||.|.++||+|+++
T Consensus 2 ~~~l~~~~itK~f~~---------------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~ 62 (501)
T COG3845 2 EPALEMRGITKRFPG---------------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIR 62 (501)
T ss_pred CceEEEeccEEEcCC---------------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEE
Confidence 357999999999963 3799999999999999999999999999999999999999999874
No 18
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.51 E-value=1.8e-14 Score=143.00 Aligned_cols=59 Identities=36% Similarity=0.576 Sum_probs=54.7
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++||+|.|++. .+++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus 3 ~~i~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i 61 (303)
T TIGR01288 3 VAIDLVGVSKSYGDK---------------VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61 (303)
T ss_pred cEEEEEeEEEEeCCe---------------EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 468999999999532 59999999999999999999999999999999999999999986
No 19
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=2.7e-14 Score=134.98 Aligned_cols=59 Identities=22% Similarity=0.519 Sum_probs=54.9
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..|+++||+..|++. .|++|+||++++||+++|+|||||||||+++.|.|+++|++|++
T Consensus 3 ~~i~v~nl~v~y~~~---------------~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i 61 (254)
T COG1121 3 PMIEVENLTVSYGNR---------------PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61 (254)
T ss_pred cEEEEeeeEEEECCE---------------eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceE
Confidence 469999999999542 49999999999999999999999999999999999999999987
No 20
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.50 E-value=2.9e-14 Score=135.38 Aligned_cols=59 Identities=29% Similarity=0.573 Sum_probs=54.6
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
.++++||+..|+++ ..++|+||++++||+++|||||||||||++++|+|+++|.+|+++
T Consensus 2 ~L~~~~ls~~y~~~---------------~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~ 60 (258)
T COG1120 2 MLEVENLSFGYGGK---------------PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60 (258)
T ss_pred eeEEEEEEEEECCe---------------eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEE
Confidence 47899999999642 689999999999999999999999999999999999999999874
No 21
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.50 E-value=3e-14 Score=140.41 Aligned_cols=59 Identities=25% Similarity=0.541 Sum_probs=54.6
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
.|+++||+|.|++. .||+++||++.+||.++||||||+|||||++||+|+.+||+|+++
T Consensus 3 ~i~l~~v~K~yg~~---------------~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~ 61 (338)
T COG3839 3 ELELKNVRKSFGSF---------------EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61 (338)
T ss_pred EEEEeeeEEEcCCc---------------eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 58999999999642 299999999999999999999999999999999999999999874
No 22
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.49 E-value=3.9e-14 Score=130.23 Aligned_cols=58 Identities=26% Similarity=0.525 Sum_probs=54.0
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+++++|+-.|++. +|++++||.|++|||++|||+||||||||++.|+|+.+|++|++
T Consensus 3 mL~v~~l~~~YG~~---------------~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I 60 (237)
T COG0410 3 MLEVENLSAGYGKI---------------QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60 (237)
T ss_pred ceeEEeEeecccce---------------eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeE
Confidence 47899999999642 79999999999999999999999999999999999999999986
No 23
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.48 E-value=5.4e-14 Score=134.16 Aligned_cols=63 Identities=27% Similarity=0.444 Sum_probs=56.4
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
|++++++|.|... +.+...||+|+||.|++|||||++|+.||||||+++++.|+..||+|+++
T Consensus 2 I~l~~vsK~~~~~----------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~ 64 (339)
T COG1135 2 IELENVSKTFGQT----------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVF 64 (339)
T ss_pred eEEEeeeeeeccC----------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEE
Confidence 7899999999653 12356899999999999999999999999999999999999999999863
No 24
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=99.47 E-value=3.2e-14 Score=142.16 Aligned_cols=271 Identities=22% Similarity=0.291 Sum_probs=36.9
Q ss_pred eeecCCHHHHHHHHHhCCCcccEEEEeeCCCCC-------eeEEEEEEcCccccCCCCCCCCCccchhHHHHHHHHHHHH
Q 011717 14 VMSFRTAAEVDDWLYSNPMRCPGALHFVDRNAT-------TISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIAR 86 (479)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~av~F~~~~~~-------~~~Y~i~~n~~~~~~~~~~~~~~~~~~l~lq~ai~~ai~~ 86 (479)
...++|++++++.+.++. ..+++++++.... ..++++..|.... .....+|.++++ +.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~--~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~-l~~ 125 (344)
T PF12698_consen 60 VVEYDSEEEAKDALKNGK--IDAIIVIPKNFSQDLLSSGESPNITVYINSSNP-----------HSSQIIQNALSS-LLQ 125 (344)
T ss_dssp EEECS-HHHHHHHHHHHT---SEEEEE-TTCCCHCH-TT--ECCEEEESSSSH-----------HHHHHHHHHHHH-HHH
T ss_pred eeeeCCHHHHHHHHHhCC--CcEEEEcCccccccccccCCcceEEEEeecccc-----------hhhhhhhccccc-cch
Confidence 568999999999887653 3467777665432 2233344332211 111344555555 555
Q ss_pred HHhCCC-------CcceeeeeeccCCCCchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcChhHH
Q 011717 87 SLVGDP-------NFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAY 159 (479)
Q Consensus 87 ~~~~~~-------~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iV~EKe~klke~m~~mGl~~~~y 159 (479)
...... ....++..+..|..... .+....+.+.++....++++......+++|||+|+++.|+++|++...|
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ek~~~~~~~l~~~~~~~~~~ 204 (344)
T PF12698_consen 126 QLNASSEGKSAIQSSNSPIPVESIPLSNPS-SSFASYLIPFILFFILLIGFSFIAMSIVEEKESGTRERLLSSGVSPWSY 204 (344)
T ss_dssp HHHHCCCGCCCCHHHT--EEEEEEEECCCH-HHCHTT-------------------------------------------
T ss_pred hhhhhhhhhhhhcccccccccccccccccc-ccccccccccchhHHHHHHHHhhchhhhhHhhhhhhHhhhcccCCHHHH
Confidence 433211 01122333333322111 1222223332222223333333455689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHH
Q 011717 160 WLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFL 239 (479)
Q Consensus 160 Wls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~g~s~i~~~~~~S~fF~~~~~a~~~~~~~~~~~~~ 239 (479)
|+++++.+++..++.+++++++ +++...+...+...+++++++++++.+++++++|.+|++++.+..+..++.+....
T Consensus 205 ~~~~~l~~~~~~~i~~~i~~~i--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~ 282 (344)
T PF12698_consen 205 WLSKFLAYFLVSLIQSLIIIII--IFGISGIPFGNFLLLLLLLLLFSLAFISFGFLISSFFKNSSTAISVASIIILLLSF 282 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHH--HhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 9999999999988887665553 33311233336667778899999999999999999999998876544333221111
Q ss_pred HHHHHhhccccCcccchhhhhhheecChHHHHHHHHHHHHhcCCCCCcccccccCccCCCCCCcccccHHHHHHHHHHHH
Q 011717 240 TQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATF 319 (479)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (479)
.... .++ .+..+..++.+..++|++.+..++..+.... |. .....+.++++.+
T Consensus 283 ~~~~---~~~-~~~~~~~~~~i~~~~P~~~~~~~~~~~~~~~---------~~--------------~~~~~~~~l~~~~ 335 (344)
T PF12698_consen 283 LSGG---FFP-LSSLPSFLQWISSFLPFYWFIQGLRNIIYGD---------WS--------------EIWISLIILLLFA 335 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHH---HHh-HHhhHHHHHHHHHHhhHHHHHHHHHHHHHhc---------HH--------------HHHHHHHHHHHHH
Confidence 1000 011 1223455667788999998888877665210 00 1123346677788
Q ss_pred HHHHHHHHH
Q 011717 320 FVWFILAIY 328 (479)
Q Consensus 320 ~ly~lL~~y 328 (479)
++|+++++|
T Consensus 336 ~v~~~l~~~ 344 (344)
T PF12698_consen 336 VVYLLLAIL 344 (344)
T ss_dssp ---------
T ss_pred HHHHHHHhC
Confidence 889888876
No 25
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.47 E-value=5.5e-14 Score=132.89 Aligned_cols=61 Identities=31% Similarity=0.634 Sum_probs=53.0
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++++++|.|++.. ....+++++||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus 1 l~~~~l~~~~~~~~-----------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i 61 (218)
T cd03255 1 IELKNLSKTYGGGG-----------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEV 61 (218)
T ss_pred CeEeeeEEEecCCC-----------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeE
Confidence 46889999995421 01259999999999999999999999999999999999999999986
No 26
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.46 E-value=9.6e-14 Score=131.05 Aligned_cols=59 Identities=31% Similarity=0.526 Sum_probs=53.2
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
++++|++|.|++.. ..+++++||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 2 l~~~~l~~~~~~~~-------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 60 (216)
T TIGR00960 2 IRFEQVSKAYPGGH-------------QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKI 60 (216)
T ss_pred eEEEEEEEEecCCC-------------eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 67899999995321 158999999999999999999999999999999999999999986
No 27
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.46 E-value=7.5e-14 Score=142.74 Aligned_cols=59 Identities=31% Similarity=0.516 Sum_probs=54.5
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
.++++||+|.|++. .+++|+||++++||++||+|||||||||++++|+|+++|++|+++
T Consensus 3 ~L~~~nls~~y~~~---------------~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~ 61 (402)
T PRK09536 3 MIDVSDLSVEFGDT---------------TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL 61 (402)
T ss_pred eEEEeeEEEEECCE---------------EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEE
Confidence 58899999999532 599999999999999999999999999999999999999999863
No 28
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.46 E-value=1.3e-13 Score=130.06 Aligned_cols=60 Identities=23% Similarity=0.277 Sum_probs=55.2
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+..+++++++|.|++. .+++++||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus 9 ~~~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i 68 (214)
T PRK13543 9 PPLLAAHALAFSRNEE---------------PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQI 68 (214)
T ss_pred cceEEEeeEEEecCCc---------------eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeE
Confidence 4569999999999532 58999999999999999999999999999999999999999986
No 29
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.46 E-value=9.3e-14 Score=130.31 Aligned_cols=58 Identities=29% Similarity=0.452 Sum_probs=53.5
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+++++++|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 2 ~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 59 (207)
T PRK13539 2 MLEGEDLACVRGGR---------------VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTI 59 (207)
T ss_pred EEEEEeEEEEECCe---------------EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 37899999999532 58999999999999999999999999999999999999999986
No 30
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.46 E-value=1e-13 Score=139.16 Aligned_cols=61 Identities=23% Similarity=0.500 Sum_probs=54.3
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
++++||+|.|+++. ..+.|++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus 2 I~~~~lsk~y~~~~-----------~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I 62 (343)
T TIGR02314 2 IKLSNITKVFHQGT-----------KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSV 62 (343)
T ss_pred EEEEEEEEEECCCC-----------cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 78999999995321 12369999999999999999999999999999999999999999986
No 31
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.45 E-value=1e-13 Score=124.90 Aligned_cols=57 Identities=33% Similarity=0.675 Sum_probs=52.2
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++++++|.|++. .+++++||++++||+++|+|+||+||||++++|+|+.+|++|++
T Consensus 1 l~~~~l~~~~~~~---------------~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v 57 (163)
T cd03216 1 LELRGITKRFGGV---------------KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57 (163)
T ss_pred CEEEEEEEEECCe---------------EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 4688999999532 58999999999999999999999999999999999999999976
No 32
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.45 E-value=1.4e-13 Score=126.77 Aligned_cols=60 Identities=32% Similarity=0.676 Sum_probs=55.6
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++||+|+|+++ +.|++|+||++++||..+++|++||||||++++|.|+.+||+|++
T Consensus 2 ~~i~~~nl~k~yp~~--------------~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i 61 (258)
T COG3638 2 MMIEVKNLSKTYPGG--------------HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61 (258)
T ss_pred ceEEEeeeeeecCCC--------------ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceE
Confidence 368999999999653 269999999999999999999999999999999999999999986
No 33
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=9e-14 Score=131.64 Aligned_cols=61 Identities=25% Similarity=0.568 Sum_probs=53.2
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++++++|.|++.. ....+++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus 1 l~~~~l~~~~~~~~-----------~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 61 (220)
T cd03293 1 LEVRNVSKTYGGGG-----------GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEV 61 (220)
T ss_pred CeEEEEEEEcCCCC-----------cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 46889999996421 11269999999999999999999999999999999999999999986
No 34
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.45 E-value=1.3e-13 Score=133.53 Aligned_cols=60 Identities=20% Similarity=0.414 Sum_probs=55.2
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
...++++||+|.|++. .+++++||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 10 ~~~l~i~~l~~~~~~~---------------~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i 69 (257)
T PRK11247 10 GTPLLLNAVSKRYGER---------------TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL 69 (257)
T ss_pred CCcEEEEEEEEEECCc---------------ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence 3569999999999532 58999999999999999999999999999999999999999986
No 35
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=1.1e-13 Score=132.87 Aligned_cols=58 Identities=29% Similarity=0.554 Sum_probs=53.5
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++|++|.|++. .+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus 2 ~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 59 (239)
T cd03296 2 SIEVRNVSKRFGDF---------------VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59 (239)
T ss_pred EEEEEeEEEEECCE---------------EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 37899999999532 58999999999999999999999999999999999999999986
No 36
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.45 E-value=1.4e-13 Score=130.77 Aligned_cols=60 Identities=15% Similarity=0.284 Sum_probs=55.1
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+..+++++|+|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 5 ~~~i~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 64 (225)
T PRK10247 5 SPLLQLQNVGYLAGDA---------------KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64 (225)
T ss_pred CceEEEeccEEeeCCc---------------eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE
Confidence 4569999999999532 58999999999999999999999999999999999999999976
No 37
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.44 E-value=1.3e-13 Score=121.53 Aligned_cols=57 Identities=28% Similarity=0.432 Sum_probs=52.0
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++++++|.|++. .+++++||++++||+++++|+|||||||++++|+|+.+|++|++
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i 57 (144)
T cd03221 1 IELENLSKTYGGK---------------LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57 (144)
T ss_pred CEEEEEEEEECCc---------------eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEE
Confidence 3678999999532 58999999999999999999999999999999999999999976
No 38
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=1.6e-13 Score=135.21 Aligned_cols=64 Identities=23% Similarity=0.395 Sum_probs=55.1
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
.+++++|+|.|++.. ...+.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+++
T Consensus 2 ~l~~~~l~~~y~~~~----------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~ 65 (287)
T PRK13637 2 SIKIENLTHIYMEGT----------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKII 65 (287)
T ss_pred EEEEEEEEEECCCCC----------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEE
Confidence 478999999996421 0112599999999999999999999999999999999999999999863
No 39
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.44 E-value=1.4e-13 Score=129.81 Aligned_cols=58 Identities=31% Similarity=0.564 Sum_probs=52.8
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++++++|.|+++ ..+++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus 2 l~~~~l~~~~~~~--------------~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i 59 (214)
T TIGR02673 2 IEFHNVSKAYPGG--------------VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59 (214)
T ss_pred EEEEeeeEEeCCC--------------ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 6789999999421 158999999999999999999999999999999999999999986
No 40
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=1.5e-13 Score=135.36 Aligned_cols=64 Identities=11% Similarity=0.277 Sum_probs=54.9
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
.++++||+|.|++... ..+.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+++
T Consensus 2 ~i~~~~l~~~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~ 65 (287)
T PRK13641 2 SIKFENVDYIYSPGTP----------MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTIT 65 (287)
T ss_pred EEEEEEEEEEcCCCCC----------ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 4789999999963210 012599999999999999999999999999999999999999999863
No 41
>PLN03140 ABC transporter G family member; Provisional
Probab=99.44 E-value=3.3e-11 Score=140.93 Aligned_cols=72 Identities=19% Similarity=0.197 Sum_probs=53.7
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC--CCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV--TGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p--TsG~a 478 (479)
..+..+||+...+.+... .....+++.+.+++|+|+.+++||+++|+|+|||||||++++|+|..++ ++|++
T Consensus 866 ~~~~~~~v~y~v~~~~~~--~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I 939 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEM--KEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDI 939 (1470)
T ss_pred ceEEEEEEEEEEccCccc--cccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceE
Confidence 468999998887432110 0000112234699999999999999999999999999999999998763 67865
No 42
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=1.9e-13 Score=134.08 Aligned_cols=61 Identities=20% Similarity=0.365 Sum_probs=55.1
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..+++++|+|.|++. .+.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 4 ~~l~~~~l~~~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i 64 (279)
T PRK13635 4 EIIRVEHISFRYPDA-------------ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64 (279)
T ss_pred ceEEEEEEEEEeCCC-------------CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence 468999999999532 1259999999999999999999999999999999999999999986
No 43
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.44 E-value=1.3e-13 Score=130.55 Aligned_cols=59 Identities=46% Similarity=0.625 Sum_probs=52.7
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++++++|.|++. ...+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 1 l~~~~l~~~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 59 (220)
T cd03263 1 LQIRNLTKTYKKG-------------TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59 (220)
T ss_pred CEEEeeEEEeCCC-------------CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 4688999999532 0258999999999999999999999999999999999999999986
No 44
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=1.7e-13 Score=134.07 Aligned_cols=59 Identities=22% Similarity=0.413 Sum_probs=53.3
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
++++|++|.|++. ..+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+++
T Consensus 2 l~~~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 60 (274)
T PRK13644 2 IRLENVSYSYPDG--------------TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60 (274)
T ss_pred EEEEEEEEEcCCC--------------CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 6789999999532 1489999999999999999999999999999999999999999863
No 45
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=2e-13 Score=130.42 Aligned_cols=64 Identities=22% Similarity=0.431 Sum_probs=55.7
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
+.+++++++|.|+++. +...+++++||++++||+++|+|+|||||||++++|+|+++|++|+++
T Consensus 4 ~~l~~~~l~~~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 67 (233)
T PRK11629 4 ILLQCDNLCKRYQEGS-----------VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVI 67 (233)
T ss_pred ceEEEEeEEEEcCCCC-----------cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 3589999999996421 012599999999999999999999999999999999999999999863
No 46
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=2e-13 Score=133.84 Aligned_cols=59 Identities=27% Similarity=0.507 Sum_probs=53.7
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++|++|.|++. ..+++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus 3 ~l~~~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i 61 (277)
T PRK13652 3 LIETRDLCYSYSGS--------------KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61 (277)
T ss_pred eEEEEEEEEEeCCC--------------CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 47899999999532 148999999999999999999999999999999999999999986
No 47
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=1.8e-13 Score=124.35 Aligned_cols=59 Identities=22% Similarity=0.466 Sum_probs=52.6
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++++++|.|++.. ..+++++||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 1 l~~~~l~~~~~~~~-------------~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i 59 (171)
T cd03228 1 IEFKNVSFSYPGRP-------------KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59 (171)
T ss_pred CEEEEEEEEcCCCC-------------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE
Confidence 36789999995421 148999999999999999999999999999999999999999976
No 48
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=2.5e-13 Score=132.67 Aligned_cols=63 Identities=25% Similarity=0.409 Sum_probs=55.9
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
.+.+++++++|.|++.. +.+++|+||++++||+++|+|+|||||||++++|+|+++|++|+++
T Consensus 5 ~~~l~i~~l~~~~~~~~-------------~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~ 67 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDA-------------SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67 (269)
T ss_pred CceEEEEEEEEEcCCCC-------------CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 44699999999996421 1489999999999999999999999999999999999999999763
No 49
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.43 E-value=2.4e-13 Score=128.78 Aligned_cols=61 Identities=25% Similarity=0.479 Sum_probs=53.8
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++++++|.|++.. +...+++++||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 2 l~~~~v~~~~~~~~-----------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i 62 (221)
T TIGR02211 2 LKCENLGKRYQEGK-----------LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEV 62 (221)
T ss_pred EEEEeeeEEccCCC-----------cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 67899999995421 11258999999999999999999999999999999999999999986
No 50
>PRK10908 cell division protein FtsE; Provisional
Probab=99.43 E-value=2.2e-13 Score=129.24 Aligned_cols=58 Identities=24% Similarity=0.457 Sum_probs=52.7
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
++++|++|.|++. ..+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 2 l~~~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 59 (222)
T PRK10908 2 IRFEHVSKAYLGG--------------RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI 59 (222)
T ss_pred EEEEeeEEEecCC--------------CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 6789999999421 158999999999999999999999999999999999999999986
No 51
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.43 E-value=2.2e-13 Score=132.98 Aligned_cols=60 Identities=22% Similarity=0.385 Sum_probs=55.0
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+..++++|++|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 5 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 64 (269)
T PRK11831 5 ANLVDMRGVSFTRGNR---------------CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64 (269)
T ss_pred cceEEEeCeEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 3579999999999531 58999999999999999999999999999999999999999986
No 52
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=2.4e-13 Score=132.40 Aligned_cols=60 Identities=23% Similarity=0.416 Sum_probs=55.3
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+..+++++++|.|++. .+++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus 9 ~~~l~i~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 68 (265)
T PRK10575 9 DTTFALRNVSFRVPGR---------------TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI 68 (265)
T ss_pred CceEEEeeEEEEECCE---------------EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE
Confidence 4579999999999531 58999999999999999999999999999999999999999986
No 53
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.42 E-value=6.1e-14 Score=123.72 Aligned_cols=67 Identities=27% Similarity=0.440 Sum_probs=58.8
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++||+|+|....+. .++..+.||+.+||++++||..+++|.||+||||+-+||+|+.+||+|++
T Consensus 4 LLeV~nLsKtF~~~~~l------f~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~i 70 (267)
T COG4167 4 LLEVRNLSKTFRYRTGL------FRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEI 70 (267)
T ss_pred hhhhhhhhhhhhhhhhh------hhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceE
Confidence 47889999999765432 23456789999999999999999999999999999999999999999986
No 54
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=2e-13 Score=131.06 Aligned_cols=58 Identities=33% Similarity=0.623 Sum_probs=53.5
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+++++++|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 3 ~l~~~~l~~~~~~~---------------~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i 60 (241)
T PRK10895 3 TLTAKNLAKAYKGR---------------RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI 60 (241)
T ss_pred eEEEeCcEEEeCCE---------------EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 47899999999531 58999999999999999999999999999999999999999976
No 55
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=2.6e-13 Score=133.64 Aligned_cols=64 Identities=17% Similarity=0.330 Sum_probs=55.0
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
.++++||+|.|++... ..+.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+++
T Consensus 2 ~l~~~~l~~~y~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~ 65 (286)
T PRK13646 2 TIRFDNVSYTYQKGTP----------YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVT 65 (286)
T ss_pred EEEEEEEEEEECCCCc----------cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 3789999999953210 112599999999999999999999999999999999999999999863
No 56
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.42 E-value=2.4e-13 Score=130.68 Aligned_cols=58 Identities=34% Similarity=0.562 Sum_probs=53.5
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++|++|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus 2 ~i~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i 59 (242)
T TIGR03411 2 ILYLEGLSVSFDGF---------------KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSV 59 (242)
T ss_pred eEEEEeeEEEcCCe---------------EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeE
Confidence 47899999999531 58999999999999999999999999999999999999999986
No 57
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.42 E-value=2.8e-13 Score=128.94 Aligned_cols=63 Identities=21% Similarity=0.399 Sum_probs=55.3
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..+++++++|.|++.. ....+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus 5 ~~l~~~~l~~~~~~~~-----------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i 67 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE-----------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEV 67 (228)
T ss_pred ceEEEeeeEEEccCCC-----------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeE
Confidence 4689999999996421 01248999999999999999999999999999999999999999976
No 58
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.42 E-value=1.5e-13 Score=131.65 Aligned_cols=72 Identities=32% Similarity=0.472 Sum_probs=54.2
Q ss_pred EEEecceEEcCCCCcccc------ccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGC------CCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~------~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
++++|++|.|....+.+. ....++...+.+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i 78 (236)
T cd03267 1 IEVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEV 78 (236)
T ss_pred CceecchhhccCcCCccccchhHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence 356777777755221000 000122234569999999999999999999999999999999999999999986
No 59
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=2.9e-13 Score=126.47 Aligned_cols=62 Identities=23% Similarity=0.254 Sum_probs=55.3
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC---CCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~---pTsG~a 478 (479)
.+.++|++|.|+.++ ....+++++||++++||+++|+|+|||||||++++|+|+.+ |++|++
T Consensus 3 ~~~~~~~~~~~~~~~-----------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i 67 (202)
T cd03233 3 TLSWRNISFTTGKGR-----------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI 67 (202)
T ss_pred eEEEEccEEEeccCC-----------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEE
Confidence 578999999997542 22369999999999999999999999999999999999999 899976
No 60
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.42 E-value=2.7e-13 Score=131.19 Aligned_cols=58 Identities=24% Similarity=0.546 Sum_probs=53.9
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++|++|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 3 ~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 60 (253)
T TIGR02323 3 LLQVSGLSKSYGGG---------------KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTA 60 (253)
T ss_pred eEEEeeeEEEeCCc---------------eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 58999999999532 48999999999999999999999999999999999999999986
No 61
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=2.7e-13 Score=136.72 Aligned_cols=60 Identities=30% Similarity=0.508 Sum_probs=55.3
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
...+++++|+|.|++. .|++|+||++.+||+++|+|||||||||++++|+|+.+|++|++
T Consensus 4 ~~~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I 63 (351)
T PRK11432 4 KNFVVLKNITKRFGSN---------------TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI 63 (351)
T ss_pred CcEEEEEeEEEEECCe---------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE
Confidence 3479999999999532 58999999999999999999999999999999999999999986
No 62
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.42 E-value=3.5e-13 Score=131.43 Aligned_cols=67 Identities=28% Similarity=0.429 Sum_probs=55.6
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++||+|.|++.... ++.+.+.+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus 4 ~l~~~~l~~~~~~~~~~------~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i 70 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGW------FRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEL 70 (267)
T ss_pred eEEEeceEEEecCCCCc------ccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEE
Confidence 58999999999532100 01112369999999999999999999999999999999999999999986
No 63
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.42 E-value=3.2e-13 Score=127.72 Aligned_cols=69 Identities=25% Similarity=0.387 Sum_probs=59.0
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
..++++||+|.|..+... ++...+.||||+||+|++||++||+|.+|+||||+=++|+|+++||+|+++
T Consensus 3 ~ll~v~~l~k~f~~~~~~------~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~ 71 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGF------GKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL 71 (268)
T ss_pred ceEEEeccEEEEeccccc------CcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEE
Confidence 468999999999754210 122246899999999999999999999999999999999999999999874
No 64
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=2.5e-13 Score=129.72 Aligned_cols=61 Identities=30% Similarity=0.610 Sum_probs=53.6
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
++++|++|.|++.. +...+++++||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus 2 i~~~~l~~~~~~~~-----------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i 62 (233)
T cd03258 2 IELKNVSKVFGDTG-----------GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSV 62 (233)
T ss_pred eEEecceEEccCCC-----------CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 67899999995320 01258999999999999999999999999999999999999999986
No 65
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.41 E-value=3.2e-13 Score=126.13 Aligned_cols=58 Identities=28% Similarity=0.625 Sum_probs=54.4
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+.+++++|.|++ ..|++|+||+|.+||+++++||.|+||||++++|+|+.+||+|++
T Consensus 3 ~l~i~~v~~~f~~---------------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V 60 (248)
T COG1116 3 LLEIEGVSKSFGG---------------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60 (248)
T ss_pred eEEEEeeEEEeCc---------------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 5889999999964 279999999999999999999999999999999999999999986
No 66
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=2.7e-13 Score=136.78 Aligned_cols=61 Identities=28% Similarity=0.590 Sum_probs=53.9
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
++++||+|.|+++. +.+.+++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus 2 i~i~~l~~~y~~~~-----------~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I 62 (343)
T PRK11153 2 IELKNISKVFPQGG-----------RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRV 62 (343)
T ss_pred EEEEeEEEEeCCCC-----------CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Confidence 68999999996311 11269999999999999999999999999999999999999999986
No 67
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=3e-13 Score=130.98 Aligned_cols=59 Identities=37% Similarity=0.685 Sum_probs=54.5
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++|++|.|++. .+++++||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 4 ~~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i 62 (255)
T PRK11300 4 PLLSVSGLMMRFGGL---------------LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI 62 (255)
T ss_pred ceEEEeeEEEEECCE---------------EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceE
Confidence 369999999999532 58999999999999999999999999999999999999999986
No 68
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.41 E-value=2.8e-13 Score=131.42 Aligned_cols=58 Identities=26% Similarity=0.495 Sum_probs=53.5
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+++++++|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 2 ~l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i 59 (258)
T PRK13548 2 MLEARNLSVRLGGR---------------TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59 (258)
T ss_pred eEEEEeEEEEeCCe---------------eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence 37899999999532 58999999999999999999999999999999999999999986
No 69
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=3e-13 Score=129.55 Aligned_cols=58 Identities=26% Similarity=0.420 Sum_probs=53.8
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+++++++|.|++. .+++++||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus 5 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i 62 (237)
T PRK11614 5 MLSFDKVSAHYGKI---------------QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 62 (237)
T ss_pred EEEEEeEEEeeCCc---------------eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceE
Confidence 58899999999532 58999999999999999999999999999999999999999975
No 70
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.41 E-value=3.4e-13 Score=127.50 Aligned_cols=61 Identities=33% Similarity=0.544 Sum_probs=53.7
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
++++|++|.|++.. +...+++++||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 2 l~~~~v~~~~~~~~-----------~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 62 (218)
T cd03266 2 ITADALTKRFRDVK-----------KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFA 62 (218)
T ss_pred eEEEEEEEecCCCC-----------ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceE
Confidence 67899999996421 11258999999999999999999999999999999999999999986
No 71
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=3.9e-13 Score=132.66 Aligned_cols=64 Identities=19% Similarity=0.402 Sum_probs=55.3
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++|++|.|+++.. ....+++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus 5 ~~l~i~nl~~~~~~~~~----------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i 68 (289)
T PRK13645 5 KDIILDNVSYTYAKKTP----------FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT 68 (289)
T ss_pred ceEEEEEEEEEeCCCCc----------cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 35899999999954210 01248999999999999999999999999999999999999999986
No 72
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=3.6e-13 Score=132.45 Aligned_cols=60 Identities=33% Similarity=0.525 Sum_probs=54.7
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++|++|.|+++ +.+++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus 4 ~~l~~~~l~~~~~~~--------------~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i 63 (283)
T PRK13636 4 YILKVEELNYNYSDG--------------THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63 (283)
T ss_pred ceEEEEeEEEEeCCC--------------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEE
Confidence 468999999999522 159999999999999999999999999999999999999999986
No 73
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.41 E-value=4e-13 Score=129.70 Aligned_cols=58 Identities=24% Similarity=0.464 Sum_probs=53.9
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+++++|+|.|++. .+++++||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 4 ~l~~~~l~~~~~~~---------------~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i 61 (251)
T PRK09544 4 LVSLENVSVSFGQR---------------RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61 (251)
T ss_pred EEEEeceEEEECCc---------------eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 58899999999532 58999999999999999999999999999999999999999986
No 74
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=3.4e-13 Score=132.03 Aligned_cols=59 Identities=34% Similarity=0.491 Sum_probs=54.1
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+++++++|.|++. ..+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus 4 ~l~~~~l~~~~~~~--------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 62 (274)
T PRK13647 4 IIEVEDLHFRYKDG--------------TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62 (274)
T ss_pred eEEEEEEEEEeCCC--------------CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE
Confidence 58999999999532 159999999999999999999999999999999999999999986
No 75
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=3.8e-13 Score=133.36 Aligned_cols=62 Identities=24% Similarity=0.446 Sum_probs=54.5
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
++++||+|.|++.. .....|++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus 3 i~~~~l~~~y~~~~----------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i 64 (305)
T PRK13651 3 IKVKNIVKIFNKKL----------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTI 64 (305)
T ss_pred EEEEEEEEEECCCC----------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence 78999999996431 011259999999999999999999999999999999999999999986
No 76
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.40 E-value=3e-13 Score=128.69 Aligned_cols=61 Identities=25% Similarity=0.449 Sum_probs=53.4
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++++++|.|++.. +...+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 2 l~~~~v~~~~~~~~-----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 62 (228)
T cd03257 2 LEVKNLSVSFPTGG-----------GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSI 62 (228)
T ss_pred eEEEeeeEeccCCC-----------cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 67899999995321 11258999999999999999999999999999999999999999976
No 77
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=5.3e-13 Score=133.18 Aligned_cols=66 Identities=17% Similarity=0.417 Sum_probs=56.9
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
+..++++|+++.|++... ....+++|+||++++||++||+|+|||||||++++|+|+++|++|+++
T Consensus 19 ~~~l~~~nl~~~y~~~~~----------~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~ 84 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQE----------NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQ 84 (320)
T ss_pred CceEEEEeEEEEeCCCCc----------ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence 457999999999964210 112599999999999999999999999999999999999999999863
No 78
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=3.7e-13 Score=132.19 Aligned_cols=63 Identities=19% Similarity=0.323 Sum_probs=54.5
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+++++++|.|++... ..+.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 2 ~l~~~~l~~~~~~~~~----------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i 64 (280)
T PRK13649 2 GINLQNVSYTYQAGTP----------FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSV 64 (280)
T ss_pred eEEEEEEEEEcCCCCc----------cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 4789999999964210 01258999999999999999999999999999999999999999986
No 79
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.40 E-value=3.4e-13 Score=121.94 Aligned_cols=58 Identities=24% Similarity=0.418 Sum_probs=52.1
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++++++|.|++. ..+++++||++++||+.+++|+|||||||++++|+|+.+|++|++
T Consensus 1 i~~~~~~~~~~~~--------------~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 58 (166)
T cd03223 1 IELENLSLATPDG--------------RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58 (166)
T ss_pred CEEEEEEEEcCCC--------------CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 3678999999532 148999999999999999999999999999999999999999986
No 80
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=4.3e-13 Score=132.30 Aligned_cols=62 Identities=19% Similarity=0.337 Sum_probs=54.3
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++++|+|.|++.. .....+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 3 l~~~~l~~~y~~~~----------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 64 (290)
T PRK13634 3 ITFQKVEHRYQYKT----------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTV 64 (290)
T ss_pred EEEEEEEEEECCCC----------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence 78999999996421 011259999999999999999999999999999999999999999986
No 81
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.40 E-value=4.1e-13 Score=127.47 Aligned_cols=64 Identities=23% Similarity=0.335 Sum_probs=54.2
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
++++|++|.|++..+ .+..+.+++|+||++.+||+++|+|+|||||||++++|+|+++|++|++
T Consensus 2 l~~~~l~~~~~~~~~--------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i 65 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ--------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRI 65 (224)
T ss_pred EEEEeeEEEeecccC--------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE
Confidence 678999999964210 0011369999999999999999999999999999999999999999976
No 82
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.40 E-value=3.8e-13 Score=135.92 Aligned_cols=59 Identities=31% Similarity=0.569 Sum_probs=54.2
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
.+++++|+|.|++. .+++|+||++++||+++|+|+|||||||+++||+|+.+|++|+++
T Consensus 2 ~L~i~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~ 60 (353)
T PRK10851 2 SIEIANIKKSFGRT---------------QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIR 60 (353)
T ss_pred EEEEEEEEEEeCCe---------------EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 47899999999532 599999999999999999999999999999999999999999863
No 83
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.40 E-value=3.9e-13 Score=131.49 Aligned_cols=59 Identities=20% Similarity=0.380 Sum_probs=54.1
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+++++++|.|+++ ..+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus 6 ~l~~~~l~~~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i 64 (272)
T PRK15056 6 GIVVNDVTVTWRNG--------------HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI 64 (272)
T ss_pred eEEEEeEEEEecCC--------------cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 58999999999532 158999999999999999999999999999999999999999986
No 84
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=3.2e-13 Score=129.04 Aligned_cols=59 Identities=22% Similarity=0.483 Sum_probs=52.7
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++++++|.|++.. +.+++++||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 1 i~~~~l~~~~~~~~-------------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 59 (234)
T cd03251 1 VEFKNVTFRYPGDG-------------PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59 (234)
T ss_pred CEEEEEEEEeCCCC-------------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEE
Confidence 46889999995421 248999999999999999999999999999999999999999986
No 85
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.40 E-value=3.1e-13 Score=129.88 Aligned_cols=58 Identities=28% Similarity=0.629 Sum_probs=52.6
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++++++|.|+.+ ..+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 2 l~~~~l~~~~~~~--------------~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i 59 (243)
T TIGR02315 2 LEVENLSKVYPNG--------------KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59 (243)
T ss_pred eEEEeeeeecCCC--------------cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEE
Confidence 6789999999511 158999999999999999999999999999999999999999986
No 86
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.40 E-value=3.9e-13 Score=129.13 Aligned_cols=58 Identities=22% Similarity=0.430 Sum_probs=53.4
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++|++|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 3 ~l~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 60 (241)
T PRK14250 3 EIEFKEVSYSSFGK---------------EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60 (241)
T ss_pred eEEEEeEEEEeCCe---------------eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 37899999999532 58999999999999999999999999999999999999999976
No 87
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.40 E-value=4.6e-13 Score=129.94 Aligned_cols=59 Identities=20% Similarity=0.411 Sum_probs=54.4
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..+++++++|.|++. .+++++||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus 5 ~~l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 63 (258)
T PRK11701 5 PLLSVRGLTKLYGPR---------------KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV 63 (258)
T ss_pred ceEEEeeeEEEcCCc---------------eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence 358999999999532 58999999999999999999999999999999999999999986
No 88
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=4.9e-13 Score=130.68 Aligned_cols=62 Identities=26% Similarity=0.501 Sum_probs=55.5
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
...++++|++|.|++.. +.+++|+||++.+||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 5 ~~~l~~~nl~~~~~~~~-------------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I 66 (271)
T PRK13632 5 SVMIKVENVSFSYPNSE-------------NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66 (271)
T ss_pred ceEEEEEeEEEEcCCCC-------------ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 45699999999995321 158999999999999999999999999999999999999999986
No 89
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=3.7e-13 Score=136.16 Aligned_cols=60 Identities=27% Similarity=0.626 Sum_probs=54.1
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
.+++++++|.|++. +.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+++
T Consensus 3 ~l~i~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~ 62 (356)
T PRK11650 3 GLKLQAVRKSYDGK--------------TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIW 62 (356)
T ss_pred EEEEEeEEEEeCCC--------------CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEE
Confidence 48899999999321 1599999999999999999999999999999999999999999863
No 90
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.40 E-value=4.3e-13 Score=122.68 Aligned_cols=59 Identities=25% Similarity=0.443 Sum_probs=52.4
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++++++|.|++.. ..+++|+||++++||+++++|+|||||||++++|+|+.+|++|++
T Consensus 1 i~~~~~~~~~~~~~-------------~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i 59 (178)
T cd03247 1 LSINNVSFSYPEQE-------------QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59 (178)
T ss_pred CEEEEEEEEeCCCC-------------ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEE
Confidence 36789999995421 148999999999999999999999999999999999999999976
No 91
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.40 E-value=5.4e-13 Score=126.82 Aligned_cols=64 Identities=19% Similarity=0.374 Sum_probs=56.5
Q ss_pred CCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 403 ~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
....++++++++.|+++. .+.+++++||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 8 ~~~~l~~~~l~~~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 71 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRP------------DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV 71 (226)
T ss_pred cCceEEEEEEEEEeCCCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEE
Confidence 356799999999996421 1258999999999999999999999999999999999999999976
No 92
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.40 E-value=4e-13 Score=125.69 Aligned_cols=62 Identities=21% Similarity=0.397 Sum_probs=53.1
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
++++||+|.|++.. .+...+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 1 l~~~~l~~~~~~~~----------~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i 62 (204)
T cd03250 1 ISVEDASFTWDSGE----------QETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV 62 (204)
T ss_pred CEEeEEEEecCCCC----------ccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeE
Confidence 46889999995421 000258999999999999999999999999999999999999999986
No 93
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.40 E-value=3.8e-13 Score=136.86 Aligned_cols=58 Identities=26% Similarity=0.558 Sum_probs=53.8
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+++++|+|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 3 ~l~i~~l~~~~~~~---------------~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I 60 (369)
T PRK11000 3 SVTLRNVTKAYGDV---------------VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDL 60 (369)
T ss_pred EEEEEEEEEEeCCe---------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Confidence 48899999999532 58999999999999999999999999999999999999999986
No 94
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.39 E-value=3.8e-13 Score=129.88 Aligned_cols=58 Identities=28% Similarity=0.639 Sum_probs=53.5
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+++++|+|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 3 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 60 (250)
T PRK11264 3 AIEVKNLVKKFHGQ---------------TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI 60 (250)
T ss_pred cEEEeceEEEECCe---------------eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence 48899999999532 58999999999999999999999999999999999999999976
No 95
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.39 E-value=4.5e-13 Score=135.36 Aligned_cols=58 Identities=33% Similarity=0.596 Sum_probs=54.1
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++||+|.|++. .+++|+||++++||+++|+|||||||||+++||+|+.+|++|++
T Consensus 4 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I 61 (353)
T TIGR03265 4 YLSIDNIRKRFGAF---------------TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTI 61 (353)
T ss_pred EEEEEEEEEEeCCe---------------EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEE
Confidence 58999999999532 58999999999999999999999999999999999999999986
No 96
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=5e-13 Score=130.88 Aligned_cols=58 Identities=36% Similarity=0.608 Sum_probs=53.0
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++++++|.|++. +.+++|+||++.+||++||+|+|||||||++++|+|+.+|++|++
T Consensus 2 l~~~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i 59 (275)
T PRK13639 2 LETRDLKYSYPDG--------------TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59 (275)
T ss_pred EEEEEEEEEeCCC--------------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEE
Confidence 6789999999532 148999999999999999999999999999999999999999986
No 97
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=5.2e-13 Score=131.61 Aligned_cols=63 Identities=21% Similarity=0.329 Sum_probs=54.4
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
+++++++|.|++.. ...+.+++|+||++++||+++|+|+|||||||++++|+|+++|++|+++
T Consensus 2 i~~~~v~~~y~~~~----------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 64 (288)
T PRK13643 2 IKFEKVNYTYQPNS----------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVT 64 (288)
T ss_pred EEEEEEEEEeCCCC----------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE
Confidence 68899999996321 0112599999999999999999999999999999999999999999863
No 98
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.39 E-value=5.1e-13 Score=123.80 Aligned_cols=63 Identities=22% Similarity=0.468 Sum_probs=56.7
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
.+.++||+|+|+++.. .++||||+||++.+|||+||+|+.|+||||+.++|.|+.+|++|+++
T Consensus 3 ~l~v~nl~~~y~~~~~-----------~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~ 65 (252)
T COG1124 3 LLSVRNLSIVYGGGKF-----------AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSIL 65 (252)
T ss_pred eEEEeceEEEecCCcc-----------hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEE
Confidence 5899999999976532 22699999999999999999999999999999999999999999873
No 99
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.39 E-value=5.1e-13 Score=130.18 Aligned_cols=60 Identities=22% Similarity=0.345 Sum_probs=55.3
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
...+++++++|.|++. .+++|+||++.+||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 5 ~~~l~i~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i 64 (265)
T PRK10253 5 VARLRGEQLTLGYGKY---------------TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHV 64 (265)
T ss_pred ccEEEEEEEEEEECCE---------------EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEE
Confidence 4579999999999532 58999999999999999999999999999999999999999975
No 100
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=6.9e-13 Score=130.24 Aligned_cols=64 Identities=16% Similarity=0.362 Sum_probs=55.4
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++|++|.|++... ...+.+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus 4 ~l~~~~l~~~~~~~~~---------~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i 67 (280)
T PRK13633 4 MIKCKNVSYKYESNEE---------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKV 67 (280)
T ss_pred eEEEeeeEEEcCCCCC---------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 5899999999964210 012359999999999999999999999999999999999999999976
No 101
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=6.2e-13 Score=130.49 Aligned_cols=61 Identities=16% Similarity=0.422 Sum_probs=54.6
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++|++|.|++.. ...+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus 4 ~l~~~~l~~~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 64 (279)
T PRK13650 4 IIEVKNLTFKYKEDQ------------EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64 (279)
T ss_pred eEEEEeEEEEcCCCC------------cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 589999999995321 1259999999999999999999999999999999999999999986
No 102
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.39 E-value=7.2e-13 Score=129.32 Aligned_cols=60 Identities=20% Similarity=0.437 Sum_probs=53.8
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a 478 (479)
+..++++|++|.|++. .+++|+||++++||++||+|+|||||||++++|+|+.+ |++|++
T Consensus 19 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 83 (268)
T PRK14248 19 EHILEVKDLSIYYGEK---------------RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEI 83 (268)
T ss_pred CceEEEEEEEEEeCCc---------------eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEE
Confidence 4579999999999532 58999999999999999999999999999999999864 789975
No 103
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=5.3e-13 Score=129.30 Aligned_cols=58 Identities=21% Similarity=0.486 Sum_probs=53.3
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+++++++|.|++. .+++++||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus 2 ~l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i 59 (255)
T PRK11231 2 TLRTENLTVGYGTK---------------RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV 59 (255)
T ss_pred EEEEEeEEEEECCE---------------EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEE
Confidence 37899999999531 58999999999999999999999999999999999999999975
No 104
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=5.6e-13 Score=128.08 Aligned_cols=58 Identities=22% Similarity=0.419 Sum_probs=53.3
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+++++++|.|++. .+++|+||++++||+.+|+|+|||||||++++|+|+.+|++|++
T Consensus 2 ~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 59 (242)
T PRK11124 2 SIQLNGINCFYGAH---------------QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59 (242)
T ss_pred EEEEEeeEEEECCe---------------eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 37889999999532 58999999999999999999999999999999999999999976
No 105
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.38 E-value=5.9e-13 Score=123.55 Aligned_cols=65 Identities=26% Similarity=0.394 Sum_probs=55.3
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~--~pTsG~a 478 (479)
..+++++++|.|++.. +.....+++++||++++||+++|+|+||+||||++++|+|+. +|++|++
T Consensus 2 ~~l~~~~ls~~~~~~~---------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i 68 (194)
T cd03213 2 VTLSFRNLTVTVKSSP---------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEV 68 (194)
T ss_pred cEEEEEeeEEEEecCC---------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEE
Confidence 3589999999996421 001135999999999999999999999999999999999999 9999976
No 106
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.38 E-value=5.4e-13 Score=127.78 Aligned_cols=59 Identities=12% Similarity=0.202 Sum_probs=52.6
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++++++|.|++.. ..+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 1 i~~~~l~~~~~~~~-------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 59 (237)
T cd03252 1 ITFEHVRFRYKPDG-------------PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV 59 (237)
T ss_pred CEEEEEEEecCCCC-------------ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence 46789999995321 258999999999999999999999999999999999999999986
No 107
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.38 E-value=6.3e-13 Score=121.04 Aligned_cols=59 Identities=20% Similarity=0.470 Sum_probs=52.6
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
++++|++|.|++.. ..+++++||.+++||+++|+|+||+||||++++|+|+.+|++|++
T Consensus 1 i~~~~l~~~~~~~~-------------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i 59 (173)
T cd03246 1 LEVENVSFRYPGAE-------------PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59 (173)
T ss_pred CEEEEEEEEcCCCC-------------CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE
Confidence 36789999995421 258999999999999999999999999999999999999999976
No 108
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=5.9e-13 Score=136.06 Aligned_cols=74 Identities=23% Similarity=0.338 Sum_probs=58.0
Q ss_pred eEEEecceEEcCCCCccc------ccc---ccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717 406 AVQIRGLVKTFPGTRKIG------CCC---KCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~------~~~---~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG 476 (479)
.|+++||+|.|+...... +.. ..++.+...|++|+||++++||+++|+|+|||||||++++|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 589999999997642100 000 01223344699999999999999999999999999999999999999999
Q ss_pred ccC
Q 011717 477 DGC 479 (479)
Q Consensus 477 ~a~ 479 (479)
+++
T Consensus 84 ~I~ 86 (400)
T PRK10070 84 QVL 86 (400)
T ss_pred EEE
Confidence 863
No 109
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.38 E-value=7e-13 Score=125.55 Aligned_cols=63 Identities=24% Similarity=0.392 Sum_probs=54.8
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
++++++++|.|+++. +.+.+++++||++++||+++++|+|||||||++++|+|+++|++|+++
T Consensus 1 ~l~~~~l~~~~~~~~-----------~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~ 63 (220)
T TIGR02982 1 VISIRNLNHYYGHGS-----------LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLK 63 (220)
T ss_pred CEEEEEEEEEccCCC-----------cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 368899999995421 123699999999999999999999999999999999999999999763
No 110
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.38 E-value=5.9e-13 Score=121.21 Aligned_cols=57 Identities=33% Similarity=0.624 Sum_probs=51.8
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++++++|.|++. .+++++||++++||+++|+|+||+||||++++|+|+.+|++|++
T Consensus 1 l~~~~l~~~~~~~---------------~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i 57 (173)
T cd03230 1 IEVRNLSKRYGKK---------------TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57 (173)
T ss_pred CEEEEEEEEECCe---------------eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 3578999999531 48999999999999999999999999999999999999999976
No 111
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.38 E-value=6.2e-13 Score=122.80 Aligned_cols=61 Identities=21% Similarity=0.508 Sum_probs=56.8
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
...|++++|+|.|++. +..+|++|+|++||+++++|+.|+||||+++.|.|+.+|++|++.
T Consensus 6 ~~~I~vr~v~~~fG~~---------------~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~ 66 (263)
T COG1127 6 EPLIEVRGVTKSFGDR---------------VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66 (263)
T ss_pred cceEEEeeeeeecCCE---------------EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEE
Confidence 5689999999999653 689999999999999999999999999999999999999999873
No 112
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.38 E-value=5.4e-13 Score=130.00 Aligned_cols=67 Identities=19% Similarity=0.311 Sum_probs=55.0
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+++++|+|.|++.... +++..+.+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus 2 ~l~~~~l~~~~~~~~~~------~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 68 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLF------GAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTV 68 (265)
T ss_pred eEEEEeEEEEeccCccc------cccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 47899999999532100 00112369999999999999999999999999999999999999999986
No 113
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.38 E-value=6.5e-13 Score=125.72 Aligned_cols=59 Identities=22% Similarity=0.442 Sum_probs=53.4
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++++++|.|++. .+.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 3 l~~~~l~~~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i 61 (220)
T cd03245 3 IEFRNVSFSYPNQ-------------EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV 61 (220)
T ss_pred EEEEEEEEEcCCC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeE
Confidence 7899999999532 1258999999999999999999999999999999999999999986
No 114
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.38 E-value=6.1e-13 Score=120.97 Aligned_cols=59 Identities=29% Similarity=0.671 Sum_probs=54.9
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
.|+++||+|.|++. .+++|+||+|.+||+++++||.|+||||++++|.|+.+|++|+++
T Consensus 2 mi~i~~l~K~fg~~---------------~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~ 60 (240)
T COG1126 2 MIEIKNLSKSFGDK---------------EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60 (240)
T ss_pred eEEEEeeeEEeCCe---------------EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEE
Confidence 48899999999643 699999999999999999999999999999999999999999863
No 115
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.38 E-value=6.5e-13 Score=125.80 Aligned_cols=59 Identities=14% Similarity=0.298 Sum_probs=53.6
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
++++|++|.|++.. +.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 3 l~~~~l~~~~~~~~-------------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 61 (221)
T cd03244 3 IEFKNVSLRYRPNL-------------PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI 61 (221)
T ss_pred EEEEEEEEecCCCC-------------cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE
Confidence 78999999996421 158999999999999999999999999999999999999999976
No 116
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.38 E-value=6.4e-13 Score=134.50 Aligned_cols=58 Identities=26% Similarity=0.508 Sum_probs=53.9
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC--ccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG--GDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs--G~a 478 (479)
.+++++++|.|++. .|++|+||++.+||+++|+|||||||||+++||+|+.+|++ |++
T Consensus 5 ~l~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i 64 (362)
T TIGR03258 5 GIRIDHLRVAYGAN---------------TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRI 64 (362)
T ss_pred EEEEEEEEEEECCe---------------EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEE
Confidence 48999999999532 59999999999999999999999999999999999999999 976
No 117
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.38 E-value=6.7e-13 Score=128.73 Aligned_cols=59 Identities=19% Similarity=0.415 Sum_probs=54.3
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..+++++|+|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 4 ~~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i 62 (257)
T PRK10619 4 NKLNVIDLHKRYGEH---------------EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSI 62 (257)
T ss_pred ccEEEeeeEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 358999999999532 58999999999999999999999999999999999999999976
No 118
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.38 E-value=6.4e-13 Score=129.70 Aligned_cols=60 Identities=22% Similarity=0.513 Sum_probs=54.2
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a 478 (479)
+..+++++++|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+ |++|++
T Consensus 11 ~~~l~i~nl~~~~~~~---------------~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v 75 (269)
T PRK14259 11 NIIISLQNVTISYGTF---------------EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRV 75 (269)
T ss_pred CceEEEEeEEEEECCE---------------EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence 4579999999999532 58999999999999999999999999999999999987 689976
No 119
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.38 E-value=8.2e-13 Score=128.36 Aligned_cols=75 Identities=24% Similarity=0.312 Sum_probs=58.6
Q ss_pred CceEEEecceEEcCCCCc-ccccc--c--cCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRK-IGCCC--K--CQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~-~~~~~--~--~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+..|.++||+|.|...+. .+.-. . .++...+.+++++||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I 81 (264)
T PRK13546 2 NVSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV 81 (264)
T ss_pred CceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence 356899999999976321 00000 0 012245579999999999999999999999999999999999999999976
No 120
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.37 E-value=6.8e-13 Score=128.36 Aligned_cols=60 Identities=25% Similarity=0.495 Sum_probs=53.6
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a 478 (479)
++.+++++++|.|++. .+++|+||++++||++||+|+|||||||++++|+|+.+ |++|++
T Consensus 4 ~~~l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 68 (253)
T PRK14242 4 PPKMEARGLSFFYGDF---------------QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEI 68 (253)
T ss_pred CcEEEEeeeEEEECCe---------------eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEE
Confidence 4679999999999531 58999999999999999999999999999999999864 689976
No 121
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.37 E-value=3.7e-13 Score=128.26 Aligned_cols=58 Identities=29% Similarity=0.544 Sum_probs=53.4
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+++++++|.|++. .|++|++|+|+.||.++|||||||||||++++|+|++.||+|++
T Consensus 2 ~i~i~~~~~~~~~~---------------~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I 59 (345)
T COG1118 2 SIRINNVKKRFGAF---------------GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI 59 (345)
T ss_pred ceeehhhhhhcccc---------------cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceE
Confidence 37888999999542 69999999999999999999999999999999999999999986
No 122
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=1.2e-12 Score=131.17 Aligned_cols=69 Identities=26% Similarity=0.403 Sum_probs=57.1
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++||+|.|+...+. . ++++.+.||+|+||+|++||++||+|+||+||||++++|+|+++|++|++
T Consensus 4 ~~l~v~nl~~~~~~~~~~--~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i 72 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGL--F---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGEL 72 (327)
T ss_pred ceEEEeeeEEEEcCCCCc--c---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEE
Confidence 468999999999642110 0 01123479999999999999999999999999999999999999999986
No 123
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.37 E-value=7.5e-13 Score=126.09 Aligned_cols=59 Identities=22% Similarity=0.349 Sum_probs=53.5
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++|++|.|++. ..+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 2 ~l~~~~l~~~~~~~--------------~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 60 (229)
T cd03254 2 EIEFENVNFSYDEK--------------KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60 (229)
T ss_pred eEEEEEEEEecCCC--------------CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence 37899999999532 148999999999999999999999999999999999999999986
No 124
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.37 E-value=5.5e-13 Score=135.39 Aligned_cols=73 Identities=16% Similarity=0.323 Sum_probs=57.3
Q ss_pred EEEecceEEcCCCCccc------ccc---ccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 407 VQIRGLVKTFPGTRKIG------CCC---KCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~------~~~---~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
|+++||.|.|+.....- +.. ..++.+.+.||+|+||++++||+++|+|+|||||||++++|+|+++|++|+
T Consensus 1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~ 80 (382)
T TIGR03415 1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGS 80 (382)
T ss_pred CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence 46788888886532100 000 013455678999999999999999999999999999999999999999998
Q ss_pred cC
Q 011717 478 GC 479 (479)
Q Consensus 478 a~ 479 (479)
++
T Consensus 81 I~ 82 (382)
T TIGR03415 81 VL 82 (382)
T ss_pred EE
Confidence 63
No 125
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.37 E-value=9.8e-13 Score=123.33 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=54.8
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..+++++++|.|++.. ..+++++||++++||+++|+|+||+||||++++|+|+.+|++|++
T Consensus 5 ~~l~~~~l~~~~~~~~-------------~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 65 (207)
T cd03369 5 GEIEVENLSVRYAPDL-------------PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKI 65 (207)
T ss_pred CeEEEEEEEEEeCCCC-------------cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE
Confidence 4589999999995421 158999999999999999999999999999999999999999986
No 126
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.37 E-value=7.2e-13 Score=127.00 Aligned_cols=60 Identities=25% Similarity=0.447 Sum_probs=53.0
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++++++|.|++.. .+.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 1 l~i~~l~~~~~~~~------------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i 60 (238)
T cd03249 1 IEFKNVSFRYPSRP------------DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60 (238)
T ss_pred CeEEEEEEecCCCC------------CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEE
Confidence 36889999995421 1258999999999999999999999999999999999999999986
No 127
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.36 E-value=9.4e-13 Score=133.81 Aligned_cols=60 Identities=33% Similarity=0.612 Sum_probs=55.2
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
...++++|++|.|++. .+++++||++.+||+++|+|+||+||||+++||+|+.+|++|++
T Consensus 12 ~~~L~l~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I 71 (375)
T PRK09452 12 SPLVELRGISKSFDGK---------------EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71 (375)
T ss_pred CceEEEEEEEEEECCe---------------EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Confidence 4469999999999532 58999999999999999999999999999999999999999986
No 128
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.36 E-value=8.1e-13 Score=128.09 Aligned_cols=60 Identities=20% Similarity=0.393 Sum_probs=54.4
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+.+.+++++|.|++. .+++|+||.+.+||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 8 ~~~i~~~~~~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v 67 (257)
T PRK14246 8 EDVFNISRLYLYINDK---------------AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKI 67 (257)
T ss_pred hhheeeeeEEEecCCc---------------eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCce
Confidence 3569999999999532 58999999999999999999999999999999999999999754
No 129
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.36 E-value=1.3e-12 Score=130.90 Aligned_cols=74 Identities=19% Similarity=0.311 Sum_probs=58.4
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
+..++++||+|.|+...... . +.+..+.+.||+|+||++++||++||+|+||+||||++++|+|+++|++|+++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~-~-~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~ 79 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQ-W-FWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVA 79 (331)
T ss_pred CceEEEeCeEEEECCCCccc-c-ccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEE
Confidence 46799999999996421100 0 00011235799999999999999999999999999999999999999999863
No 130
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.36 E-value=3.9e-13 Score=127.65 Aligned_cols=57 Identities=30% Similarity=0.429 Sum_probs=51.9
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+.++++++.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 23 l~~~~~~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i 79 (224)
T cd03220 23 LGILGRKGEVGEF---------------WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV 79 (224)
T ss_pred hhhhhhhhhcCCe---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 6677888888532 69999999999999999999999999999999999999999986
No 131
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.36 E-value=9e-13 Score=127.54 Aligned_cols=58 Identities=28% Similarity=0.557 Sum_probs=52.8
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-----Cccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-----GGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT-----sG~a 478 (479)
.+++++|+|.|++. .+++|+||++.+||+++|+|+|||||||++++|+|+++|+ +|++
T Consensus 4 ~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i 66 (253)
T PRK14267 4 AIETVNLRVYYGSN---------------HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEV 66 (253)
T ss_pred eEEEEeEEEEeCCe---------------eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE
Confidence 58999999999532 5899999999999999999999999999999999999874 8976
No 132
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.36 E-value=9.5e-13 Score=128.40 Aligned_cols=60 Identities=20% Similarity=0.447 Sum_probs=54.2
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a 478 (479)
...++++|++|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+| ++|++
T Consensus 17 ~~~l~~~nl~~~~~~~---------------~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I 81 (267)
T PRK14235 17 EIKMRARDVSVFYGEK---------------QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKI 81 (267)
T ss_pred CceEEEEeEEEEECCE---------------EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE
Confidence 4579999999999531 589999999999999999999999999999999999874 89976
No 133
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.36 E-value=3.8e-13 Score=120.07 Aligned_cols=60 Identities=33% Similarity=0.549 Sum_probs=55.9
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
..+.+++++..|++. .|+|++||.|.+||.-+|+|||||||||.+..|||-.+|+.|++|
T Consensus 4 ~iL~~~~vsVsF~GF---------------~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~ 63 (249)
T COG4674 4 IILYLDGVSVSFGGF---------------KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVL 63 (249)
T ss_pred ceEEEeceEEEEcce---------------eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEE
Confidence 568999999999653 699999999999999999999999999999999999999999875
No 134
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=1.4e-12 Score=127.98 Aligned_cols=62 Identities=23% Similarity=0.404 Sum_probs=55.1
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
.++++|++|.|++.. .+.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+++
T Consensus 4 ~l~~~~l~~~~~~~~------------~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 65 (277)
T PRK13642 4 ILEVENLVFKYEKES------------DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVK 65 (277)
T ss_pred eEEEEEEEEEcCCCC------------cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEE
Confidence 589999999996321 12589999999999999999999999999999999999999999863
No 135
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=1.4e-12 Score=128.25 Aligned_cols=61 Identities=21% Similarity=0.369 Sum_probs=54.2
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC---ccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG---GDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs---G~a 478 (479)
..+++++++|.|++.. ..+++++||++++||++||+|+|||||||++++|+|+++|++ |++
T Consensus 4 ~~l~i~~l~~~~~~~~-------------~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i 67 (282)
T PRK13640 4 NIVEFKHVSFTYPDSK-------------KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKI 67 (282)
T ss_pred ceEEEEEEEEEcCCCC-------------ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEE
Confidence 4689999999995421 148999999999999999999999999999999999999998 765
No 136
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=5.5e-13 Score=130.17 Aligned_cols=56 Identities=20% Similarity=0.463 Sum_probs=50.7
Q ss_pred EEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 408 ~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+++++|.|++. .+++|+||++++|||++|+|+|||||||++++|+|+.+|++|++
T Consensus 26 ~~~~~~~~~~~~---------------~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i 81 (269)
T cd03294 26 SKEEILKKTGQT---------------VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKV 81 (269)
T ss_pred hhhhhhhhcCCc---------------eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence 456888888532 58999999999999999999999999999999999999999976
No 137
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.34 E-value=1.3e-12 Score=126.86 Aligned_cols=60 Identities=27% Similarity=0.452 Sum_probs=53.7
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC--C---CCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--V---TGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~--p---TsG~a 478 (479)
+..++++|++|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+ | ++|++
T Consensus 10 ~~~l~i~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i 74 (259)
T PRK14274 10 QEVYQINGMNLWYGQH---------------HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEM 74 (259)
T ss_pred CceEEEeeEEEEECCe---------------eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEE
Confidence 4579999999999532 58999999999999999999999999999999999987 3 68976
No 138
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.34 E-value=1.6e-12 Score=127.09 Aligned_cols=60 Identities=27% Similarity=0.462 Sum_probs=54.3
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a 478 (479)
...+++++++|.|++. .+++|+||++++||++||+|+|||||||++++|+|+++ |++|++
T Consensus 22 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i 86 (271)
T PRK14238 22 KVVFDTQNLNLWYGED---------------HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKI 86 (271)
T ss_pred ceEEEEeeeEEEECCc---------------ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeE
Confidence 4579999999999532 48999999999999999999999999999999999987 699976
No 139
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.34 E-value=1.2e-12 Score=127.00 Aligned_cols=58 Identities=24% Similarity=0.492 Sum_probs=52.5
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a 478 (479)
.++++|++|.|++. .+++|+||++++||++||+|+|||||||++++|+|+.+| ++|++
T Consensus 4 ~l~i~~v~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I 66 (258)
T PRK14241 4 RIDVKDLNIYYGSF---------------HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEV 66 (258)
T ss_pred cEEEeeEEEEECCE---------------eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEE
Confidence 58899999999532 589999999999999999999999999999999999874 79976
No 140
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=1.5e-12 Score=132.52 Aligned_cols=61 Identities=36% Similarity=0.623 Sum_probs=55.5
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
...+++++++|.|++. .+++|+||++++||+++|+||||+||||++++|+|+.+|++|+++
T Consensus 17 ~~~l~l~~v~~~~~~~---------------~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~ 77 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQ---------------HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIM 77 (377)
T ss_pred CceEEEEeEEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence 3469999999999531 589999999999999999999999999999999999999999863
No 141
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.34 E-value=1.5e-12 Score=126.28 Aligned_cols=60 Identities=27% Similarity=0.517 Sum_probs=53.8
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a 478 (479)
.+.+++++++|.|++. .+++|+||++.+||++||+|+|||||||++++|+|+.+| ++|++
T Consensus 10 ~~~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i 74 (258)
T PRK14268 10 QPQIKVENLNLWYGEK---------------QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKV 74 (258)
T ss_pred ceeEEEeeeEEEeCCe---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEE
Confidence 3469999999999531 589999999999999999999999999999999999875 89975
No 142
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.34 E-value=1.8e-12 Score=126.49 Aligned_cols=60 Identities=27% Similarity=0.484 Sum_probs=53.9
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a 478 (479)
...++++|++|.|++. .+++|+||++++||++||+|+|||||||++++|+|+++ |++|++
T Consensus 18 ~~~l~~~nl~~~~~~~---------------~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 82 (267)
T PRK14237 18 EIALSTKDLHVYYGKK---------------EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQI 82 (267)
T ss_pred CeEEEEeeEEEEECCe---------------eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEE
Confidence 4579999999999531 58999999999999999999999999999999999986 589975
No 143
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.34 E-value=1.7e-12 Score=126.22 Aligned_cols=60 Identities=28% Similarity=0.484 Sum_probs=53.8
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a 478 (479)
...++++|++|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+ |++|++
T Consensus 11 ~~~l~~~~l~~~~~~~---------------~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i 75 (260)
T PRK10744 11 PSKIQVRNLNFYYGKF---------------HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI 75 (260)
T ss_pred CceEEEEEEEEEeCCe---------------EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEE
Confidence 4569999999999532 58999999999999999999999999999999999986 589975
No 144
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.33 E-value=1.9e-12 Score=137.70 Aligned_cols=59 Identities=31% Similarity=0.548 Sum_probs=54.6
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++||+|.|++. .+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus 10 ~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i 68 (510)
T PRK15439 10 PLLCARSISKQYSGV---------------EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68 (510)
T ss_pred ceEEEEeEEEEeCCc---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 469999999999532 58999999999999999999999999999999999999999986
No 145
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=1.8e-12 Score=129.87 Aligned_cols=62 Identities=16% Similarity=0.385 Sum_probs=54.1
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC----CCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP----VTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~----pTsG~a 478 (479)
.++++||+|.|++.. +.+.||+|+||++++||++||+|+||+||||++++|+|+++ ||+|++
T Consensus 3 ~L~v~~l~~~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i 68 (326)
T PRK11022 3 LLNVDKLSVHFGDES-----------APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKL 68 (326)
T ss_pred eEEEeCeEEEECCCC-----------ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEE
Confidence 478999999996431 12469999999999999999999999999999999999987 488976
No 146
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.33 E-value=7.6e-13 Score=117.81 Aligned_cols=58 Identities=31% Similarity=0.572 Sum_probs=54.2
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
|+.++++|.|++++ .|++|+||.+++||..=|.||.||||||++++|.|...||+|++
T Consensus 2 I~f~~V~k~Y~~g~--------------~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i 59 (223)
T COG2884 2 IRFENVSKAYPGGR--------------EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59 (223)
T ss_pred eeehhhhhhcCCCc--------------hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceE
Confidence 68899999997652 69999999999999999999999999999999999999999986
No 147
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.33 E-value=1.9e-12 Score=125.22 Aligned_cols=60 Identities=28% Similarity=0.519 Sum_probs=54.1
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC--CCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~--~~pTsG~a 478 (479)
+..+++++|+|.|++. .+++|+||++++||++||+|+|||||||++++|+|+ .+|++|++
T Consensus 5 ~~~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i 66 (252)
T CHL00131 5 KPILEIKNLHASVNEN---------------EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDI 66 (252)
T ss_pred CceEEEEeEEEEeCCE---------------EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceE
Confidence 3469999999999531 589999999999999999999999999999999998 58999976
No 148
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.33 E-value=2.5e-12 Score=124.75 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=56.2
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
...++++++++.|++.. ..+++++||++++||++||+|+|||||||++++|+|+.+|++|+++
T Consensus 17 ~~~i~~~~l~~~~~~~~-------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 79 (257)
T cd03288 17 GGEIKIHDLCVRYENNL-------------KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV 79 (257)
T ss_pred CceEEEEEEEEEeCCCC-------------CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEE
Confidence 45699999999995421 2589999999999999999999999999999999999999999863
No 149
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.33 E-value=1.5e-12 Score=138.44 Aligned_cols=58 Identities=38% Similarity=0.669 Sum_probs=53.9
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++|++|.|++. .+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus 4 ~i~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i 61 (501)
T PRK10762 4 LLQLKGIDKAFPGV---------------KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSI 61 (501)
T ss_pred eEEEeeeEEEeCCe---------------EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 58999999999531 58999999999999999999999999999999999999999986
No 150
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.33 E-value=1.8e-12 Score=126.54 Aligned_cols=67 Identities=21% Similarity=0.385 Sum_probs=54.6
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++|++|.|++....| ++..+.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 3 ~l~~~nl~~~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i 69 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSG------KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNV 69 (268)
T ss_pred eEEEeceEEEecCCcccc------ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 478999999996310000 0001258999999999999999999999999999999999999999976
No 151
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=1.7e-12 Score=125.34 Aligned_cols=58 Identities=24% Similarity=0.548 Sum_probs=52.4
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a 478 (479)
.+++++++|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+| ++|++
T Consensus 3 ~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i 65 (250)
T PRK14247 3 KIEIRDLKVSFGQV---------------EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEV 65 (250)
T ss_pred eEEEEeeEEEECCe---------------eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEE
Confidence 48899999999532 589999999999999999999999999999999999874 79976
No 152
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=1.9e-12 Score=125.18 Aligned_cols=60 Identities=22% Similarity=0.496 Sum_probs=53.4
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a 478 (479)
+.-++++|++|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+| ++|++
T Consensus 2 ~~~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i 66 (251)
T PRK14270 2 KIKMESKNLNLWYGEK---------------QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEV 66 (251)
T ss_pred ccEEEEEEeEEEECCe---------------eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEE
Confidence 3468999999999532 589999999999999999999999999999999999875 78975
No 153
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.33 E-value=1.4e-12 Score=138.16 Aligned_cols=58 Identities=21% Similarity=0.373 Sum_probs=53.7
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++|++|.|++. .+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus 3 ~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i 60 (490)
T PRK10938 3 SLQISQGTFRLSDT---------------KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGER 60 (490)
T ss_pred eEEEEeEEEEcCCe---------------eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceE
Confidence 48899999999532 48999999999999999999999999999999999999999986
No 154
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.33 E-value=2.1e-12 Score=125.08 Aligned_cols=57 Identities=23% Similarity=0.494 Sum_probs=52.9
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC----CCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV----TGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p----TsG~a 478 (479)
.++++|++|.| +. .+++|+||++++||+++|+|+|||||||++++|+|+.+| ++|++
T Consensus 4 ~l~~~~l~~~~-~~---------------~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i 64 (254)
T PRK10418 4 QIELRNIALQA-AQ---------------PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRV 64 (254)
T ss_pred EEEEeCeEEEe-cc---------------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEE
Confidence 58999999999 21 489999999999999999999999999999999999999 99976
No 155
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=2.1e-12 Score=125.02 Aligned_cols=60 Identities=22% Similarity=0.444 Sum_probs=53.6
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a 478 (479)
+..+++++++|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+++| ++|++
T Consensus 5 ~~~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 69 (254)
T PRK14273 5 EAIIETENLNLFYTDF---------------KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNV 69 (254)
T ss_pred CceEEEeeeEEEeCCc---------------eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEE
Confidence 3479999999999532 489999999999999999999999999999999999987 48875
No 156
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=2e-12 Score=125.07 Aligned_cols=59 Identities=22% Similarity=0.447 Sum_probs=52.6
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC--C---CCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--V---TGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~--p---TsG~a 478 (479)
..++++|++|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+ | ++|++
T Consensus 3 ~~l~~~nl~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v 66 (252)
T PRK14256 3 NKVKLEQLNVHFGKN---------------HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKI 66 (252)
T ss_pred cEEEEEEEEEEeCCe---------------eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEE
Confidence 458999999999532 58999999999999999999999999999999999986 4 68975
No 157
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.32 E-value=2e-12 Score=120.53 Aligned_cols=61 Identities=23% Similarity=0.483 Sum_probs=54.6
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++++++|.|+.+. ....|++++||+|++||.++++||.|+||||++++|.|+..||+|.+
T Consensus 2 i~~~~v~k~y~~~~-----------~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v 62 (226)
T COG1136 2 IELKNVSKIYGLGG-----------EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV 62 (226)
T ss_pred cEEeeeEEEeccCC-----------cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE
Confidence 56899999996531 12579999999999999999999999999999999999999999985
No 158
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=2.5e-12 Score=126.50 Aligned_cols=60 Identities=22% Similarity=0.507 Sum_probs=54.3
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a 478 (479)
++.+++++|+|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+ |++|++
T Consensus 37 ~~~l~i~~l~~~~~~~---------------~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I 101 (285)
T PRK14254 37 ETVIEARDLNVFYGDE---------------QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGEL 101 (285)
T ss_pred CceEEEEEEEEEECCE---------------eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE
Confidence 5579999999999532 58999999999999999999999999999999999987 689976
No 159
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=2.3e-12 Score=129.42 Aligned_cols=62 Identities=23% Similarity=0.376 Sum_probs=54.1
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC----CCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP----VTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~----pTsG~a 478 (479)
.++++||+|.|+... +.+.||+|+||+|++||++||+|+|||||||++++|+|+.+ |++|++
T Consensus 3 ~L~v~~l~~~y~~~~-----------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i 68 (330)
T PRK15093 3 LLDIRNLTIEFKTSD-----------GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRM 68 (330)
T ss_pred eEEEeeeEEEEeCCC-----------CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEE
Confidence 588999999995421 12369999999999999999999999999999999999986 588976
No 160
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=2.1e-12 Score=124.79 Aligned_cols=58 Identities=24% Similarity=0.461 Sum_probs=52.4
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a 478 (479)
.+++++++|.|++. .+++++||++++||+++|+|+|||||||++++|+|+.+| ++|++
T Consensus 3 ~l~~~~l~~~~~~~---------------~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i 65 (250)
T PRK14262 3 IIEIENFSAYYGEK---------------KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKI 65 (250)
T ss_pred eEEEEeeEEEeCCc---------------eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE
Confidence 48899999999531 589999999999999999999999999999999999874 88975
No 161
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=2.9e-12 Score=118.73 Aligned_cols=62 Identities=26% Similarity=0.343 Sum_probs=53.3
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~--~pTsG~a 478 (479)
.+++++++|.|++.. +...+++++||++++||+++|+|+|||||||++++|+|+. +|++|++
T Consensus 3 ~l~~~~l~~~~~~~~-----------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i 66 (192)
T cd03232 3 VLTWKNLNYTVPVKG-----------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEI 66 (192)
T ss_pred EEEEeeeEEEecCCC-----------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEE
Confidence 588999999996421 0125899999999999999999999999999999999986 4899976
No 162
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=2.5e-12 Score=124.24 Aligned_cols=58 Identities=22% Similarity=0.521 Sum_probs=52.5
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a 478 (479)
.+++++++|.|++. .+++++||++.+||+.+|+|+|||||||++++|+|+.+ |++|++
T Consensus 4 ~l~~~~l~~~~~~~---------------~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v 66 (251)
T PRK14251 4 IISAKDVHLSYGNY---------------EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEI 66 (251)
T ss_pred eEEEEeeEEEECCe---------------eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEE
Confidence 58999999999531 58999999999999999999999999999999999986 479976
No 163
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.31 E-value=2.6e-12 Score=124.98 Aligned_cols=59 Identities=29% Similarity=0.512 Sum_probs=52.8
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC---ccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG---GDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs---G~a 478 (479)
+.++++||+|.|++. .+++++||++.+||+++|+|+|||||||++++|+|+++|++ |++
T Consensus 3 ~~l~~~nl~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i 64 (262)
T PRK09984 3 TIIRVEKLAKTFNQH---------------QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHI 64 (262)
T ss_pred cEEEEeeEEEEeCCe---------------EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEE
Confidence 368999999999532 58999999999999999999999999999999999999864 764
No 164
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.31 E-value=2.4e-12 Score=137.14 Aligned_cols=59 Identities=34% Similarity=0.540 Sum_probs=54.4
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++|++|.|++. .+++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus 4 ~~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i 62 (510)
T PRK09700 4 PYISMAGIGKSFGPV---------------HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI 62 (510)
T ss_pred ceEEEeeeEEEcCCe---------------EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEE
Confidence 358999999999532 58999999999999999999999999999999999999999986
No 165
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.31 E-value=2.6e-12 Score=124.14 Aligned_cols=58 Identities=24% Similarity=0.483 Sum_probs=51.7
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a 478 (479)
.++++|++|.|++. .+++|+||++++||+.+|+|+|||||||++++|+|+.+| ++|++
T Consensus 3 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i 65 (250)
T PRK14240 3 KISVKDLDLFYGDF---------------QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEV 65 (250)
T ss_pred eEEEEEEEEEECCc---------------eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence 48899999999532 589999999999999999999999999999999998763 68976
No 166
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.31 E-value=3.6e-12 Score=124.65 Aligned_cols=60 Identities=23% Similarity=0.505 Sum_probs=53.8
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a 478 (479)
...++++|++|.|++. .+++|+||++++||++|++|+|||||||++++|+|+.+ |++|++
T Consensus 23 ~~~l~~~nl~~~~~~~---------------~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i 87 (272)
T PRK14236 23 QTALEVRNLNLFYGDK---------------QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEI 87 (272)
T ss_pred CcEEEEEEEEEEECCe---------------eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEE
Confidence 4569999999999532 58999999999999999999999999999999999987 489975
No 167
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.31 E-value=2.7e-12 Score=124.97 Aligned_cols=60 Identities=25% Similarity=0.581 Sum_probs=53.2
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a 478 (479)
...+++++++|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+ |++|++
T Consensus 8 ~~~l~i~~v~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 72 (264)
T PRK14243 8 ETVLRTENLNVYYGSF---------------LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV 72 (264)
T ss_pred ceEEEEeeeEEEECCE---------------EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEE
Confidence 3469999999999532 58999999999999999999999999999999999976 488975
No 168
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=2.7e-12 Score=123.66 Aligned_cols=58 Identities=19% Similarity=0.367 Sum_probs=52.2
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC---CCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~---pTsG~a 478 (479)
.+++++++|.|++. .+++|+||++.+||+++|+|+|||||||++++|+|+.+ |++|++
T Consensus 2 ~~~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i 62 (246)
T PRK14269 2 IAKTTNLNLFYGKK---------------QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLV 62 (246)
T ss_pred ceeeeeeEEEECCE---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEE
Confidence 37899999999531 58999999999999999999999999999999999974 799976
No 169
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=2.5e-12 Score=124.36 Aligned_cols=58 Identities=21% Similarity=0.414 Sum_probs=52.3
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-----Cccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-----GGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT-----sG~a 478 (479)
.++++|++|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+++|+ +|++
T Consensus 4 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i 66 (252)
T PRK14272 4 LLSAQDVNIYYGDK---------------QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRI 66 (252)
T ss_pred EEEEeeeEEEECCE---------------EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeE
Confidence 58899999999531 5899999999999999999999999999999999999875 7875
No 170
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.30 E-value=2.7e-12 Score=137.99 Aligned_cols=61 Identities=21% Similarity=0.359 Sum_probs=55.4
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
++.++++||+|.|+++ +.+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus 4 ~~~l~i~~l~~~y~~~--------------~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i 64 (556)
T PRK11819 4 QYIYTMNRVSKVVPPK--------------KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEA 64 (556)
T ss_pred cEEEEEeeEEEEeCCC--------------CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 3579999999999521 158999999999999999999999999999999999999999986
No 171
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=3e-12 Score=139.47 Aligned_cols=60 Identities=25% Similarity=0.369 Sum_probs=55.6
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+..++++||+|.|++. .+++|+||+|++||++||+|+|||||||++++|+|+.+|++|++
T Consensus 310 ~~~l~~~~l~~~y~~~---------------~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i 369 (638)
T PRK10636 310 NPLLKMEKVSAGYGDR---------------IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI 369 (638)
T ss_pred CceEEEEeeEEEeCCe---------------eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE
Confidence 5679999999999532 58999999999999999999999999999999999999999986
No 172
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=3.5e-12 Score=124.26 Aligned_cols=60 Identities=23% Similarity=0.465 Sum_probs=53.5
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a 478 (479)
...+++++++|.|++. .+++|+||++++||+.+|+|+|||||||++++|+|+.+| ++|++
T Consensus 14 ~~~l~~~~l~~~~~~~---------------~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i 78 (265)
T PRK14252 14 QQKSEVNKLNFYYGGY---------------QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEI 78 (265)
T ss_pred CceEEEEEEEEEECCe---------------eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEE
Confidence 3569999999999532 589999999999999999999999999999999999875 78875
No 173
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.30 E-value=3.6e-12 Score=127.73 Aligned_cols=64 Identities=22% Similarity=0.438 Sum_probs=55.9
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC---Cccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT---sG~a 478 (479)
+..++++||+|.|+.. ...+.||+|+||+|++||++||+|+||+||||++++|+|+++|+ +|++
T Consensus 10 ~~~L~i~~l~~~~~~~-----------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I 76 (330)
T PRK09473 10 DALLDVKDLRVTFSTP-----------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSA 76 (330)
T ss_pred CceEEEeCeEEEEecC-----------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEE
Confidence 3579999999999532 11246999999999999999999999999999999999999995 8976
No 174
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=3.4e-12 Score=125.07 Aligned_cols=60 Identities=25% Similarity=0.397 Sum_probs=53.7
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a 478 (479)
...+++++++|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+| ++|++
T Consensus 19 ~~~l~i~nl~~~~~~~---------------~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i 83 (276)
T PRK14271 19 APAMAAVNLTLGFAGK---------------TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDV 83 (276)
T ss_pred CcEEEEeeEEEEECCE---------------EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEE
Confidence 3468999999999532 589999999999999999999999999999999999986 58865
No 175
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=2.9e-12 Score=123.70 Aligned_cols=58 Identities=28% Similarity=0.495 Sum_probs=52.1
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a 478 (479)
.+++++++|.|++. .+++|+||++++||+.+|+|+|||||||++++|+|+.+| ++|++
T Consensus 3 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v 65 (249)
T PRK14253 3 KFNIENLDLFYGEN---------------QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKL 65 (249)
T ss_pred eEEEeccEEEECCe---------------eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE
Confidence 47899999999532 589999999999999999999999999999999999986 48865
No 176
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.30 E-value=4.1e-12 Score=131.55 Aligned_cols=72 Identities=19% Similarity=0.390 Sum_probs=60.9
Q ss_pred CCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 403 ~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..+.++++||+|.|..+..++ .++++.++||+|+||++++||++||+|..|+||||+.++|+|+.+|++|++
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~----~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i 348 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLF----VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSI 348 (539)
T ss_pred cCceeEeeeeeeeeccccccc----cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 357899999999997543110 122456789999999999999999999999999999999999999999976
No 177
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=3.6e-12 Score=125.54 Aligned_cols=61 Identities=20% Similarity=0.313 Sum_probs=53.8
Q ss_pred CCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCcc
Q 011717 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGD 477 (479)
Q Consensus 403 ~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~ 477 (479)
.++.+++++++|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+ |++|+
T Consensus 36 ~~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~ 100 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEF---------------EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGA 100 (286)
T ss_pred CceEEEEeeeEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceE
Confidence 35679999999999531 48999999999999999999999999999999999854 49997
Q ss_pred c
Q 011717 478 G 478 (479)
Q Consensus 478 a 478 (479)
+
T Consensus 101 I 101 (286)
T PRK14275 101 L 101 (286)
T ss_pred E
Confidence 5
No 178
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.30 E-value=3.6e-12 Score=135.41 Aligned_cols=60 Identities=32% Similarity=0.500 Sum_probs=54.7
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
+.++++|++|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+++
T Consensus 3 ~~l~~~~l~~~~~~~---------------~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~ 62 (501)
T PRK11288 3 PYLSFDGIGKTFPGV---------------KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSIL 62 (501)
T ss_pred ceEEEeeeEEEECCE---------------EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE
Confidence 358999999999531 589999999999999999999999999999999999999999863
No 179
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=3.1e-12 Score=136.06 Aligned_cols=59 Identities=29% Similarity=0.563 Sum_probs=53.7
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC--CCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV--TGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p--TsG~a 478 (479)
..++++|++|.|++. .+++|+||++++||++||+|+|||||||++++|+|+++| ++|++
T Consensus 4 ~~l~~~nl~~~~~~~---------------~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i 64 (506)
T PRK13549 4 YLLEMKNITKTFGGV---------------KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI 64 (506)
T ss_pred ceEEEeeeEEEeCCe---------------EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE
Confidence 358999999999531 589999999999999999999999999999999999996 89986
No 180
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=5.1e-12 Score=125.57 Aligned_cols=61 Identities=26% Similarity=0.538 Sum_probs=54.7
Q ss_pred CCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCcc
Q 011717 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGD 477 (479)
Q Consensus 403 ~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~ 477 (479)
.+..+++++|++.|++. .+++++||++++||++||+|+|||||||++++|+|+.+ |++|+
T Consensus 42 ~~~~l~i~nl~~~~~~~---------------~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~ 106 (305)
T PRK14264 42 GDAKLSVEDLDVYYGDD---------------HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGS 106 (305)
T ss_pred CCceEEEEEEEEEeCCe---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE
Confidence 35579999999999532 58999999999999999999999999999999999986 68997
Q ss_pred c
Q 011717 478 G 478 (479)
Q Consensus 478 a 478 (479)
+
T Consensus 107 I 107 (305)
T PRK14264 107 V 107 (305)
T ss_pred E
Confidence 6
No 181
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.29 E-value=3.4e-12 Score=121.37 Aligned_cols=62 Identities=18% Similarity=0.284 Sum_probs=53.9
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC---CCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~---pTsG~a 478 (479)
.+.+.++++.|++.. ..+.+++|+||++++||+++|+|+|||||||++++|+|+++ |++|++
T Consensus 3 ~~~~~~~~~~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i 67 (226)
T cd03234 3 VLPWWDVGLKAKNWN-----------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQI 67 (226)
T ss_pred cceeecceeeeecCc-----------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEE
Confidence 466889999996531 02369999999999999999999999999999999999999 999976
No 182
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=4.6e-12 Score=122.48 Aligned_cols=60 Identities=20% Similarity=0.391 Sum_probs=52.8
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC--C---CCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--V---TGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~--p---TsG~a 478 (479)
+..+++++++|.|++. .+++|+||++.+||++||+|+|||||||++++|+|+.+ | ++|++
T Consensus 3 ~~~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 67 (252)
T PRK14255 3 KKIITSSDVHLFYGKF---------------EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNV 67 (252)
T ss_pred cceEEEEeEEEEECCe---------------eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEE
Confidence 4468999999999531 58999999999999999999999999999999999865 4 58875
No 183
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.29 E-value=5.9e-12 Score=136.94 Aligned_cols=64 Identities=19% Similarity=0.335 Sum_probs=56.3
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+..++++||+|.|++.. +...|++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus 10 ~~~l~v~~l~~~y~~~~-----------~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i 73 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQ-----------QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLV 73 (623)
T ss_pred CceEEEeceEEEecCCC-----------CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEE
Confidence 45799999999995421 12369999999999999999999999999999999999999999975
No 184
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.28 E-value=4.7e-12 Score=117.54 Aligned_cols=61 Identities=30% Similarity=0.494 Sum_probs=56.1
Q ss_pred CCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 403 ~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+..+.++|++-.|+++ ..++++|+.|++||--+++|+|||||||+++++||+++||+|.+
T Consensus 28 ~~~li~l~~v~v~r~gk---------------~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~ 88 (257)
T COG1119 28 NEPLIELKNVSVRRNGK---------------KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88 (257)
T ss_pred CcceEEecceEEEECCE---------------eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCce
Confidence 35679999999999653 58999999999999999999999999999999999999999976
No 185
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=5.2e-12 Score=122.24 Aligned_cols=59 Identities=25% Similarity=0.522 Sum_probs=52.2
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC--C---CCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--V---TGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~--p---TsG~a 478 (479)
..+++++++|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+ | ++|++
T Consensus 5 ~~i~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 68 (253)
T PRK14261 5 IILSTKNLNLWYGEK---------------HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDI 68 (253)
T ss_pred ceEEEeeeEEEECCe---------------eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE
Confidence 468999999999532 58999999999999999999999999999999999875 3 48875
No 186
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=5.1e-12 Score=122.11 Aligned_cols=58 Identities=22% Similarity=0.503 Sum_probs=52.5
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-----Cccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-----GGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT-----sG~a 478 (479)
.+++++++|.|++. .+++|+||++++||++||+|+|||||||++++|+|+.+|+ +|++
T Consensus 4 ~l~~~~l~~~~~~~---------------~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v 66 (251)
T PRK14249 4 KIKIRGVNFFYHKH---------------QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAV 66 (251)
T ss_pred eEEEEEEEEEECCe---------------eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEE
Confidence 58899999999531 4899999999999999999999999999999999999997 5865
No 187
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=6e-12 Score=123.17 Aligned_cols=60 Identities=20% Similarity=0.512 Sum_probs=53.1
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a 478 (479)
...+++++++|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+| ++|++
T Consensus 18 ~~~l~~~nl~~~~~~~---------------~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 82 (274)
T PRK14265 18 HSVFEVEGVKVFYGGF---------------LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRL 82 (274)
T ss_pred CceEEEeeEEEEeCCe---------------EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceE
Confidence 4579999999999532 589999999999999999999999999999999999763 68865
No 188
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=4.4e-12 Score=123.16 Aligned_cols=59 Identities=27% Similarity=0.525 Sum_probs=52.8
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a 478 (479)
..+++++++|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+.+| ++|++
T Consensus 6 ~~l~~~~l~~~~~~~---------------~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i 69 (259)
T PRK14260 6 PAIKVKDLSFYYNTS---------------KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVV 69 (259)
T ss_pred ceEEEEEEEEEECCe---------------EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEE
Confidence 368999999999532 589999999999999999999999999999999999885 48875
No 189
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.28 E-value=5.9e-12 Score=121.71 Aligned_cols=59 Identities=19% Similarity=0.388 Sum_probs=52.0
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CC---CCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PV---TGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~--~p---TsG~a 478 (479)
..+++++++|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+. +| ++|++
T Consensus 4 ~~l~~~~l~~~~~~~---------------~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i 67 (252)
T PRK14239 4 PILQVSDLSVYYNKK---------------KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI 67 (252)
T ss_pred ceEEEEeeEEEECCe---------------eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceE
Confidence 358999999999532 5899999999999999999999999999999999984 46 58975
No 190
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=6.4e-12 Score=122.08 Aligned_cols=60 Identities=20% Similarity=0.382 Sum_probs=53.6
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a 478 (479)
..++.++++++.|++ ..+++++||++++||++||+|+|||||||++++|+|+++| ++|++
T Consensus 6 ~~~~~~~~~~~~~~~---------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i 70 (261)
T PRK14263 6 PIVMDCKLDKIFYGN---------------FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHV 70 (261)
T ss_pred CceEEEEeEEEEeCC---------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEE
Confidence 467899999999943 1599999999999999999999999999999999999987 68875
No 191
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=5.9e-12 Score=121.61 Aligned_cols=59 Identities=25% Similarity=0.509 Sum_probs=51.6
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC---CCC--CCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI---TPV--TGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~---~~p--TsG~a 478 (479)
+.+++++++|.|++. .+++|+||++++||+.||+|+|||||||++++|+|+ .+| ++|++
T Consensus 2 ~~l~~~~~~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i 65 (250)
T PRK14245 2 VKIDARDVNFWYGDF---------------HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEI 65 (250)
T ss_pred cEEEEEEEEEEECCE---------------eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEE
Confidence 358899999999531 589999999999999999999999999999999997 455 58975
No 192
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.27 E-value=5.5e-12 Score=137.54 Aligned_cols=60 Identities=22% Similarity=0.442 Sum_probs=55.5
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+..++++||+|.|++. .+++|+||.|++||++||+|+|||||||++++|+|+.+|++|++
T Consensus 317 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i 376 (635)
T PRK11147 317 KIVFEMENVNYQIDGK---------------QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI 376 (635)
T ss_pred CceEEEeeeEEEECCe---------------EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence 5579999999999532 58999999999999999999999999999999999999999986
No 193
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.27 E-value=5.2e-12 Score=135.79 Aligned_cols=60 Identities=27% Similarity=0.444 Sum_probs=55.4
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+..+++++|+|.|++. .+++|+||++.+|||+||+|+|||||||++++|+|+.+|++|++
T Consensus 322 ~~~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i 381 (556)
T PRK11819 322 DKVIEAENLSKSFGDR---------------LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381 (556)
T ss_pred CeEEEEEeEEEEECCe---------------eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 4579999999999532 58999999999999999999999999999999999999999986
No 194
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.27 E-value=7.8e-12 Score=122.54 Aligned_cols=59 Identities=20% Similarity=0.364 Sum_probs=53.3
Q ss_pred CCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 403 ~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
....++++++++. +. .+++++||.+++||++||+|+|||||||++++|+|+++|++|++
T Consensus 36 ~~~~l~i~nls~~--~~---------------~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I 94 (282)
T cd03291 36 DDNNLFFSNLCLV--GA---------------PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI 94 (282)
T ss_pred CCCeEEEEEEEEe--cc---------------cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 3567999999984 11 48999999999999999999999999999999999999999986
No 195
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.27 E-value=5e-12 Score=135.81 Aligned_cols=60 Identities=22% Similarity=0.363 Sum_probs=54.7
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++||+|.|++. +.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 3 ~~i~~~nls~~~~~~--------------~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i 62 (552)
T TIGR03719 3 YIYTMNRVSKVVPPK--------------KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEA 62 (552)
T ss_pred EEEEEeeEEEecCCC--------------CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 468999999999522 158999999999999999999999999999999999999999986
No 196
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.27 E-value=2.4e-12 Score=116.84 Aligned_cols=62 Identities=29% Similarity=0.445 Sum_probs=53.9
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+.+.++.|+|.+... ..+.|++++||+|++||...++|+|||||||+++.|+|.+.||+|++
T Consensus 2 i~~~~~~~~f~~g~~----------~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I 63 (263)
T COG1101 2 ISLSNATKTFFKGTP----------LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQI 63 (263)
T ss_pred cccccceeeecCCCh----------hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceE
Confidence 346788888865432 34579999999999999999999999999999999999999999986
No 197
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=5.9e-12 Score=112.69 Aligned_cols=56 Identities=27% Similarity=0.539 Sum_probs=50.2
Q ss_pred EecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 409 i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
+++++|.|++. .+++++++++++||+++|+|+|||||||++++|+|+++|++|+++
T Consensus 2 ~~~~~~~~~~~---------------~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~ 57 (157)
T cd00267 2 IENLSFRYGGR---------------TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57 (157)
T ss_pred eEEEEEEeCCe---------------eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEE
Confidence 56788888532 589999999999999999999999999999999999999999763
No 198
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.27 E-value=5.4e-12 Score=135.60 Aligned_cols=61 Identities=26% Similarity=0.402 Sum_probs=55.7
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
+..+++++++|.|++. .+++|+||++++||++||+|+|||||||++++|+|+.+|++|+++
T Consensus 320 ~~~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~ 380 (552)
T TIGR03719 320 DKVIEAENLSKGFGDK---------------LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIK 380 (552)
T ss_pred CeEEEEeeEEEEECCe---------------eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEE
Confidence 4579999999999532 589999999999999999999999999999999999999999863
No 199
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.27 E-value=4.9e-12 Score=137.90 Aligned_cols=58 Identities=28% Similarity=0.471 Sum_probs=53.9
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+++++|+|.|++. .+++|+||.+++||++||+|+|||||||+++||+|+.+|++|++
T Consensus 3 ~l~i~~ls~~~~~~---------------~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I 60 (635)
T PRK11147 3 LISIHGAWLSFSDA---------------PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRI 60 (635)
T ss_pred EEEEeeEEEEeCCc---------------eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE
Confidence 48899999999532 58999999999999999999999999999999999999999986
No 200
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.26 E-value=6.5e-12 Score=133.19 Aligned_cols=60 Identities=25% Similarity=0.397 Sum_probs=53.8
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-CCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-TGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-TsG~a 478 (479)
+..++++|++|.|++. .+++|+||.+++||++||+|+|||||||++++|+|+.+| ++|++
T Consensus 258 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i 318 (490)
T PRK10938 258 EPRIVLNNGVVSYNDR---------------PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDL 318 (490)
T ss_pred CceEEEeceEEEECCe---------------eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeE
Confidence 4579999999999532 489999999999999999999999999999999998876 68875
No 201
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=5.9e-12 Score=134.73 Aligned_cols=60 Identities=27% Similarity=0.398 Sum_probs=55.2
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+..++++||+|.|++. .+++++||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 317 ~~~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i 376 (530)
T PRK15064 317 RNALEVENLTKGFDNG---------------PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376 (530)
T ss_pred CceEEEEeeEEeeCCc---------------eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 3579999999999532 48999999999999999999999999999999999999999986
No 202
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.26 E-value=8.3e-12 Score=133.30 Aligned_cols=66 Identities=21% Similarity=0.430 Sum_probs=56.2
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
...++++||+|.|++.. .+.+.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+++
T Consensus 277 ~~~l~~~~l~~~~~~~~----------~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~ 342 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVD----------RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVN 342 (520)
T ss_pred CceEEEeccEEEeccCC----------CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 34699999999995310 0112599999999999999999999999999999999999999999863
No 203
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.26 E-value=1.1e-11 Score=117.41 Aligned_cols=59 Identities=32% Similarity=0.568 Sum_probs=54.3
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+.+++++..|++. ..|++++|+++++||+.+++||||+||||++++|+|+++|++|++
T Consensus 3 ~i~~~~l~~~y~~~--------------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v 61 (235)
T COG1122 3 MIEAENLSFRYPGR--------------KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61 (235)
T ss_pred eEEEEEEEEEcCCC--------------ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE
Confidence 57889999999653 269999999999999999999999999999999999999999986
No 204
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.26 E-value=9.4e-12 Score=129.36 Aligned_cols=62 Identities=18% Similarity=0.264 Sum_probs=53.3
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++||++.|++. ....+++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus 20 ~mL~lknL~~~~~~~------------~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI 81 (549)
T PRK13545 20 PFDKLKDLFFRSKDG------------EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV 81 (549)
T ss_pred ceeEEEEEEEecCCC------------ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEE
Confidence 357777887777432 12359999999999999999999999999999999999999999986
No 205
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=8.3e-12 Score=121.34 Aligned_cols=55 Identities=22% Similarity=0.536 Sum_probs=50.5
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT 474 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT 474 (479)
..++++|++|.|++. .+++|+||++++||++||+|+|||||||++++|+|+.+|+
T Consensus 6 ~~l~~~nl~~~~~~~---------------~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~ 60 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ---------------KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELE 60 (261)
T ss_pred ceEEEeeEEEEeCCe---------------eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 368999999999532 5899999999999999999999999999999999999986
No 206
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=8.3e-12 Score=120.65 Aligned_cols=58 Identities=19% Similarity=0.428 Sum_probs=51.1
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a 478 (479)
.-++++++|.|++. .+++|+||++.+||+++|+|+|||||||++++|+|+.+ |++|++
T Consensus 5 ~~~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i 67 (251)
T PRK14244 5 HASVKNLNLWYGSK---------------QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGEL 67 (251)
T ss_pred EEEeeeEEEEECCe---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEE
Confidence 35688999999531 58999999999999999999999999999999999986 478975
No 207
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.24 E-value=1.1e-11 Score=134.76 Aligned_cols=72 Identities=26% Similarity=0.402 Sum_probs=57.3
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
+..++++||+|.|+..... . .++.+.+.|++|+||+|++||++||+|+|||||||++++|+|+.+|++|+++
T Consensus 311 ~~~L~~~~l~~~y~~~~~~--~--~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~ 382 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGL--L--NRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEII 382 (623)
T ss_pred CceEEEeeeEEEEcCCCcc--c--cccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEE
Confidence 3579999999999531100 0 0001123699999999999999999999999999999999999999999873
No 208
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=1.2e-11 Score=119.39 Aligned_cols=58 Identities=28% Similarity=0.507 Sum_probs=51.5
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a 478 (479)
.+++++++|.|++. .+++|+||++.+||+++|+|+|||||||++++|+|+.+ |++|++
T Consensus 3 ~l~~~~v~~~~~~~---------------~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v 65 (250)
T PRK14266 3 RIEVENLNTYFDDA---------------HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHI 65 (250)
T ss_pred EEEEEeEEEEeCCe---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEE
Confidence 47899999999531 58999999999999999999999999999999999864 488975
No 209
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.23 E-value=8.5e-12 Score=132.90 Aligned_cols=58 Identities=17% Similarity=0.452 Sum_probs=52.9
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
..++++|++|.|+ .+++|+||++++||++||+|+|||||||++++|+|+.+|++|+++
T Consensus 264 ~~l~~~~l~~~~~-----------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~ 321 (510)
T PRK09700 264 TVFEVRNVTSRDR-----------------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIR 321 (510)
T ss_pred cEEEEeCccccCC-----------------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEE
Confidence 4699999998662 279999999999999999999999999999999999999999863
No 210
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.21 E-value=1.3e-11 Score=131.31 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=53.7
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-CCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-TGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-TsG~a 478 (479)
..++++|++|.|++.. ...+++|+||++++||++||+|+|||||||++++|+|+.+| ++|++
T Consensus 256 ~~l~~~~l~~~~~~~~------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i 318 (500)
T TIGR02633 256 VILEARNLTCWDVINP------------HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNV 318 (500)
T ss_pred ceEEEeCCcccccccc------------cccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence 4699999999984210 11489999999999999999999999999999999999985 89986
No 211
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.21 E-value=1.9e-11 Score=119.42 Aligned_cols=59 Identities=24% Similarity=0.373 Sum_probs=52.4
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
++++|++|.|++.. ..+++|+||.+++||++||+|+|||||||++++|+|+.+ ++|+++
T Consensus 3 i~~~nls~~~~~~~-------------~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~ 61 (275)
T cd03289 3 MTVKDLTAKYTEGG-------------NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQ 61 (275)
T ss_pred EEEEEEEEEeCCCC-------------CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEE
Confidence 78999999995321 148999999999999999999999999999999999997 789763
No 212
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=1.3e-11 Score=131.30 Aligned_cols=63 Identities=22% Similarity=0.391 Sum_probs=54.3
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-CCCcccC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-VTGGDGC 479 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-pTsG~a~ 479 (479)
..+++++|+|.|+... .+.+++|+||++++||++||+|+|||||||++++|+|+.+ |++|+++
T Consensus 258 ~~l~~~~l~~~~~~~~------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~ 321 (506)
T PRK13549 258 VILEVRNLTAWDPVNP------------HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIF 321 (506)
T ss_pred ceEEEecCcccccccc------------ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEE
Confidence 4699999999994210 1258999999999999999999999999999999999998 5999863
No 213
>PLN03073 ABC transporter F family; Provisional
Probab=99.20 E-value=2.2e-11 Score=133.56 Aligned_cols=61 Identities=25% Similarity=0.386 Sum_probs=55.4
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+..+++++++|.|++. ..+++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus 506 ~~~L~~~~ls~~y~~~--------------~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I 566 (718)
T PLN03073 506 PPIISFSDASFGYPGG--------------PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566 (718)
T ss_pred CceEEEEeeEEEeCCC--------------CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceE
Confidence 3579999999999532 148999999999999999999999999999999999999999986
No 214
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.20 E-value=2.4e-11 Score=129.98 Aligned_cols=63 Identities=21% Similarity=0.364 Sum_probs=54.3
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a 478 (479)
..+++++++|.|++.. ..+.+++|+||++++||++||+|+|||||||++++|+|+++| ++|++
T Consensus 4 ~~l~~~~l~~~~~~~~-----------~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i 71 (529)
T PRK15134 4 PLLAIENLSVAFRQQQ-----------TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDI 71 (529)
T ss_pred ceEEEeceEEEecCCC-----------CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEE
Confidence 3589999999995311 012699999999999999999999999999999999999986 79975
No 215
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.17 E-value=2.7e-11 Score=127.41 Aligned_cols=58 Identities=21% Similarity=0.370 Sum_probs=54.0
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+++.+++|.|+++ +-++++||.+++|++.||+|+|||||||++++|+|...|++|++
T Consensus 3 ~i~~~~ls~~~g~~---------------~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i 60 (530)
T COG0488 3 MITLENLSLAYGDR---------------PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60 (530)
T ss_pred eEEEeeeEEeeCCc---------------eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeE
Confidence 48899999999543 57999999999999999999999999999999999999999986
No 216
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.15 E-value=3.5e-11 Score=127.59 Aligned_cols=59 Identities=22% Similarity=0.366 Sum_probs=53.1
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
+..++++||++.++ .+++++||.+++||++||+|+|||||||++++|+|+.+|++|+++
T Consensus 248 ~~~i~~~~l~~~~~-----------------~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 306 (491)
T PRK10982 248 EVILEVRNLTSLRQ-----------------PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTIT 306 (491)
T ss_pred CcEEEEeCcccccC-----------------cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEE
Confidence 34699999988641 389999999999999999999999999999999999999999863
No 217
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.14 E-value=3.6e-11 Score=105.52 Aligned_cols=60 Identities=20% Similarity=0.438 Sum_probs=55.2
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
++.+++++|+|.|++. +.-+++||++++||+.|++|..|+||||++++|+|-++|++|++
T Consensus 4 ~PLL~V~~lsk~Yg~~---------------~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v 63 (258)
T COG4107 4 KPLLSVSGLSKLYGPG---------------KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTV 63 (258)
T ss_pred CcceeehhhhhhhCCC---------------cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeE
Confidence 4578999999999654 36899999999999999999999999999999999999999986
No 218
>PRK13409 putative ATPase RIL; Provisional
Probab=99.13 E-value=6.5e-11 Score=127.42 Aligned_cols=59 Identities=25% Similarity=0.362 Sum_probs=53.9
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
...+++++++|.|++ ..++++||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus 338 ~~~l~~~~ls~~~~~----------------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I 396 (590)
T PRK13409 338 ETLVEYPDLTKKLGD----------------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV 396 (590)
T ss_pred ceEEEEcceEEEECC----------------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 457999999999943 24899999999999999999999999999999999999999986
No 219
>PRK13409 putative ATPase RIL; Provisional
Probab=99.12 E-value=4.4e-11 Score=128.68 Aligned_cols=43 Identities=35% Similarity=0.432 Sum_probs=41.6
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++++ .+++||++||+|+|||||||++++|+|+++|++|++
T Consensus 88 ~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i 130 (590)
T PRK13409 88 FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDY 130 (590)
T ss_pred eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccc
Confidence 4899999 999999999999999999999999999999999986
No 220
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=1.2e-10 Score=116.64 Aligned_cols=62 Identities=21% Similarity=0.403 Sum_probs=54.2
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a 478 (479)
+..++++|+++.|.+. ...+++|+||++++||++|++|+|||||||++++|.|+.+ |++|++
T Consensus 78 ~~~i~~~nls~~y~~~-------------~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I 144 (329)
T PRK14257 78 ANVFEIRNFNFWYMNR-------------TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEI 144 (329)
T ss_pred CceEEEEeeEEEecCC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence 4579999999999532 1258999999999999999999999999999999999986 578875
No 221
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.11 E-value=7.2e-11 Score=126.36 Aligned_cols=71 Identities=20% Similarity=0.271 Sum_probs=54.6
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
+..++++|++|.|++..... .++.+.+.+++++||++++||++||+|+|||||||++++|+|+.+ ++|+++
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~----~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~ 343 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGIL----KRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIW 343 (529)
T ss_pred CCcccccCcEEEeecCcccc----ccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEE
Confidence 34699999999995210000 000012369999999999999999999999999999999999985 899863
No 222
>PLN03073 ABC transporter F family; Provisional
Probab=99.10 E-value=1.3e-10 Score=127.57 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=52.7
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC---CCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT---PVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~---~pTsG~a 478 (479)
..-|+++|++|.|++. .+++|+||+|.+||++||+|+|||||||++++|+|.. .|++|++
T Consensus 175 ~~~I~i~nls~~y~~~---------------~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I 237 (718)
T PLN03073 175 IKDIHMENFSISVGGR---------------DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQI 237 (718)
T ss_pred ceeEEEceEEEEeCCC---------------EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEE
Confidence 3469999999999532 5899999999999999999999999999999999964 5777765
No 223
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.10 E-value=1.2e-10 Score=125.88 Aligned_cols=62 Identities=27% Similarity=0.402 Sum_probs=55.7
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
..++++|+++.|+++. ..+++|+||++++||++++.|+|||||||++++|+|+++|++|+++
T Consensus 337 ~~i~~~~v~f~y~~~~-------------~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~ 398 (574)
T PRK11160 337 VSLTLNNVSFTYPDQP-------------QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL 398 (574)
T ss_pred CeEEEEEEEEECCCCC-------------CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 4699999999996431 1489999999999999999999999999999999999999999863
No 224
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.08 E-value=1.1e-10 Score=124.21 Aligned_cols=54 Identities=24% Similarity=0.391 Sum_probs=49.2
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++++++ .+++|+||++.+||++||+|+|||||||++++|+|+.+|++|++
T Consensus 256 ~~l~~~~l~~--------------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I 309 (501)
T PRK10762 256 VRLKVDNLSG--------------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYV 309 (501)
T ss_pred cEEEEeCccc--------------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEE
Confidence 4688888863 25999999999999999999999999999999999999999986
No 225
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.07 E-value=2.2e-10 Score=125.30 Aligned_cols=60 Identities=23% Similarity=0.385 Sum_probs=54.5
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++|+++.|+++ ..+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus 450 ~~i~~~nv~~~~~~~--------------~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i 509 (659)
T TIGR00954 450 NGIKFENIPLVTPNG--------------DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRL 509 (659)
T ss_pred CeEEEEeeEEECCCC--------------CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE
Confidence 469999999999532 158999999999999999999999999999999999999999975
No 226
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.06 E-value=2.2e-10 Score=123.03 Aligned_cols=61 Identities=23% Similarity=0.487 Sum_probs=55.2
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++|+++.|++.. ..+++|+||++++||+++++|+||+||||++++|+|+++|++|++
T Consensus 315 ~~i~~~~v~~~y~~~~-------------~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i 375 (544)
T TIGR01842 315 GHLSVENVTIVPPGGK-------------KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV 375 (544)
T ss_pred CeEEEEEEEEEcCCCC-------------ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 4699999999996421 258999999999999999999999999999999999999999976
No 227
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.06 E-value=2.1e-10 Score=122.88 Aligned_cols=62 Identities=29% Similarity=0.529 Sum_probs=55.7
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
..++++|+++.|++.. +.+++|+||++++||++++.|+||+||||++++|+|+++|++|+++
T Consensus 319 ~~i~~~~v~f~y~~~~-------------~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~ 380 (529)
T TIGR02857 319 PSLEFSGLSVAYPGRR-------------APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380 (529)
T ss_pred CeEEEEEEEEECCCCC-------------cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 3699999999996431 1589999999999999999999999999999999999999999863
No 228
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.06 E-value=1.5e-10 Score=123.17 Aligned_cols=44 Identities=23% Similarity=0.328 Sum_probs=42.4
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
+++|+||++++||++||+|+|||||||++++|+|+.+|++|+++
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~ 311 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVY 311 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEE
Confidence 79999999999999999999999999999999999999999863
No 229
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.06 E-value=2.4e-10 Score=126.20 Aligned_cols=62 Identities=18% Similarity=0.350 Sum_probs=55.8
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
..++++|++..|++.. ..+++|+||++++||.++++|+||+||||++++|+|+++|++|+++
T Consensus 450 ~~I~~~nvsf~Y~~~~-------------~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 511 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDG-------------PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF 511 (686)
T ss_pred ceEEEEEEEEEcCCCC-------------ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE
Confidence 4699999999996431 2589999999999999999999999999999999999999999863
No 230
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.06 E-value=2.5e-10 Score=122.25 Aligned_cols=60 Identities=27% Similarity=0.558 Sum_probs=54.9
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++|++..|+++. .+++|+||++++||++++.|++||||||+++.|.|+++|++|++
T Consensus 333 ~~I~~~~vsf~Y~~~~--------------~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I 392 (529)
T TIGR02868 333 PTLELRDLSFGYPGSP--------------PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV 392 (529)
T ss_pred ceEEEEEEEEecCCCC--------------ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 4599999999996421 48999999999999999999999999999999999999999986
No 231
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.05 E-value=2.3e-10 Score=126.87 Aligned_cols=61 Identities=20% Similarity=0.293 Sum_probs=55.6
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++|++..|++.. ..+++|+||++++||.++++|+||+||||++++|+|+++|++|++
T Consensus 476 ~~I~~~~vsf~y~~~~-------------~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I 536 (710)
T TIGR03796 476 GYVELRNITFGYSPLE-------------PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEI 536 (710)
T ss_pred CeEEEEEEEEecCCCC-------------CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 4699999999996431 258999999999999999999999999999999999999999986
No 232
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.05 E-value=2.6e-10 Score=123.48 Aligned_cols=60 Identities=28% Similarity=0.377 Sum_probs=54.7
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++|+++.|++.. .+++|+||++++||+++++|+|||||||++++|+|+++|++|++
T Consensus 333 ~~i~~~~v~~~y~~~~--------------~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i 392 (585)
T TIGR01192 333 GAVEFRHITFEFANSS--------------QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQI 392 (585)
T ss_pred CeEEEEEEEEECCCCC--------------ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEE
Confidence 3599999999996421 47999999999999999999999999999999999999999986
No 233
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.05 E-value=1.9e-10 Score=100.78 Aligned_cols=66 Identities=18% Similarity=0.299 Sum_probs=56.3
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..+.++|++|+|.-... ..-....++|+||+|+.|||.+|=||.||||||+++||-|.+.|++|++
T Consensus 3 ~~l~v~~~~KtFtlH~q--------~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I 68 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQ--------GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQI 68 (235)
T ss_pred ceeeeecchhheEeeec--------CCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceE
Confidence 35889999999953221 1223468999999999999999999999999999999999999999986
No 234
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.05 E-value=2.5e-10 Score=122.73 Aligned_cols=60 Identities=23% Similarity=0.427 Sum_probs=54.8
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++|+++.|+++ ..+++|+||++++||.+++.|+||+||||++++|+|+++|++|++
T Consensus 321 ~~i~~~~v~f~y~~~--------------~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i 380 (547)
T PRK10522 321 QTLELRNVTFAYQDN--------------GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380 (547)
T ss_pred ceEEEEEEEEEeCCC--------------CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 369999999999632 148999999999999999999999999999999999999999986
No 235
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.05 E-value=1.7e-10 Score=122.89 Aligned_cols=55 Identities=22% Similarity=0.432 Sum_probs=49.6
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+..++++|+++ .+++++||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus 266 ~~~l~~~~l~~--------------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i 320 (510)
T PRK15439 266 APVLTVEDLTG--------------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRI 320 (510)
T ss_pred CceEEEeCCCC--------------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEE
Confidence 34688998873 14999999999999999999999999999999999999999986
No 236
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.05 E-value=2.9e-10 Score=124.30 Aligned_cols=62 Identities=19% Similarity=0.480 Sum_probs=54.8
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++|++|.|++.. +.+.+++|+||++++||+.+|+|+||+||||++++|+|+.+|++|++
T Consensus 4 ~l~~~nl~~~y~~~~-----------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i 65 (648)
T PRK10535 4 LLELKDIRRSYPSGE-----------EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTY 65 (648)
T ss_pred EEEEeeEEEEeCCCC-----------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence 589999999996421 11258999999999999999999999999999999999999999975
No 237
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2e-10 Score=105.67 Aligned_cols=59 Identities=27% Similarity=0.505 Sum_probs=51.4
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC--CCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~--~~pTsG~a 478 (479)
.++|+||+-.-.++ +..++++||+|++||+.+++|||||||||+.+.|+|. +.+|+|++
T Consensus 3 ~L~I~dLhv~v~~~--------------keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I 63 (251)
T COG0396 3 MLEIKDLHVEVEGK--------------KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEI 63 (251)
T ss_pred eeEEeeeEEEecCc--------------hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceE
Confidence 47888888776431 2589999999999999999999999999999999995 69999986
No 238
>PLN03211 ABC transporter G-25; Provisional
Probab=99.04 E-value=1.5e-10 Score=126.19 Aligned_cols=45 Identities=24% Similarity=0.434 Sum_probs=42.2
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC--Cccc
Q 011717 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT--GGDG 478 (479)
Q Consensus 434 ~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT--sG~a 478 (479)
+.+++|+|+.+++||++||+|+|||||||++++|+|..+|+ +|++
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I 127 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTI 127 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEE
Confidence 46999999999999999999999999999999999999885 8876
No 239
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.04 E-value=2.5e-10 Score=124.04 Aligned_cols=63 Identities=17% Similarity=0.324 Sum_probs=56.8
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
...++++|++..|+... + ..++|+||++++||.+|++|.||+||||+.|+|+|+++|++|+++
T Consensus 469 ~g~I~~~nvsf~y~~~~------------~-~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~ 531 (709)
T COG2274 469 QGEIEFENVSFRYGPDD------------P-PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531 (709)
T ss_pred CceEEEEEEEEEeCCCC------------c-chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 45699999999996542 1 589999999999999999999999999999999999999999863
No 240
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.03 E-value=4e-10 Score=121.29 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=55.7
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++|+++.|++.. ..+..+++|+||++++||++++.|+||+||||++++|+|+++|++|++
T Consensus 336 ~~i~~~~v~f~y~~~~----------~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i 399 (555)
T TIGR01194 336 DSIELKDVHMNPKAPE----------GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEI 399 (555)
T ss_pred ceEEEEEEEEEeCCCC----------CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 4699999999996421 011258999999999999999999999999999999999999999986
No 241
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.03 E-value=3.1e-10 Score=122.99 Aligned_cols=62 Identities=24% Similarity=0.434 Sum_probs=55.6
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
..++++|++..|++.. ..+++|+||++++||++++.|+||+||||++++|+|+++|++|+++
T Consensus 340 ~~i~~~~vsf~y~~~~-------------~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~ 401 (582)
T PRK11176 340 GDIEFRNVTFTYPGKE-------------VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL 401 (582)
T ss_pred CeEEEEEEEEecCCCC-------------CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEE
Confidence 3599999999996431 1589999999999999999999999999999999999999999863
No 242
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.03 E-value=2.7e-10 Score=126.04 Aligned_cols=63 Identities=24% Similarity=0.460 Sum_probs=56.1
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
..++++|++..|++.. ++.+++|+||++++||.+++.|+||+||||+++.|+|+++|++|+++
T Consensus 477 ~~I~~~nVsf~Y~~~~------------~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 539 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRP------------DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL 539 (711)
T ss_pred CeEEEEEEEEECCCCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence 4699999999996421 12589999999999999999999999999999999999999999863
No 243
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.03 E-value=3e-10 Score=119.57 Aligned_cols=63 Identities=25% Similarity=0.403 Sum_probs=57.0
Q ss_pred CCCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 402 DPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 402 ~~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..+..+.++|++|.|++. +.-++++||.|.+|+..||+|+|||||||++++|+|...|++|++
T Consensus 317 ~g~~vl~~~~~~~~y~~~--------------~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v 379 (530)
T COG0488 317 LGKLVLEFENVSKGYDGG--------------RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379 (530)
T ss_pred CCCeeEEEeccccccCCC--------------ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceE
Confidence 347899999999999643 157999999999999999999999999999999999999999975
No 244
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.03 E-value=3.4e-10 Score=122.19 Aligned_cols=61 Identities=25% Similarity=0.355 Sum_probs=54.8
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..+++++++..|++.. ..+++|+||++++||++++.|+||+||||++++|+|+++|++|++
T Consensus 312 ~~I~~~~v~~~y~~~~-------------~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i 372 (569)
T PRK10789 312 GELDVNIRQFTYPQTD-------------HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDI 372 (569)
T ss_pred CcEEEEEEEEECCCCC-------------CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE
Confidence 3589999999996421 158999999999999999999999999999999999999999986
No 245
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=3e-10 Score=101.35 Aligned_cols=45 Identities=29% Similarity=0.466 Sum_probs=43.2
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
.-..++||++.+||.+-+-|||||||||+++||+|+..|++|+++
T Consensus 16 ~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~ 60 (209)
T COG4133 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVY 60 (209)
T ss_pred eeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEE
Confidence 579999999999999999999999999999999999999999875
No 246
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.01 E-value=5e-10 Score=123.80 Aligned_cols=61 Identities=23% Similarity=0.418 Sum_probs=55.4
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++|++..|++.. ..+++|+||++++||++++.|+||+||||++++|.|+++|++|++
T Consensus 462 ~~I~~~~vsf~Y~~~~-------------~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I 522 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQE-------------TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV 522 (694)
T ss_pred ceEEEEEEEEEeCCCC-------------ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 4699999999996431 158999999999999999999999999999999999999999986
No 247
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.00 E-value=5.8e-10 Score=123.58 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=55.3
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
..++++|++..|++. ..+++|+||++++||.+++.|+|||||||++++|.|+++|++|+++
T Consensus 472 ~~I~~~~vsf~y~~~--------------~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~ 532 (708)
T TIGR01193 472 GDIVINDVSYSYGYG--------------SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL 532 (708)
T ss_pred CcEEEEEEEEEcCCC--------------CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEE
Confidence 469999999999532 1589999999999999999999999999999999999999999863
No 248
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=4.1e-10 Score=116.48 Aligned_cols=59 Identities=31% Similarity=0.494 Sum_probs=52.9
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++.+||+..|++++ ++++|+||++++||.++|+|++||||||++++|.|+.+|++|++
T Consensus 320 ei~~~~l~~~y~~g~--------------~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I 378 (559)
T COG4988 320 EISLENLSFRYPDGK--------------PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEI 378 (559)
T ss_pred eeeecceEEecCCCC--------------cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceE
Confidence 344559999997541 59999999999999999999999999999999999999999985
No 249
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.99 E-value=5e-10 Score=123.78 Aligned_cols=61 Identities=18% Similarity=0.322 Sum_probs=55.3
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++|++..|++.. ..+++|+||++++||++++.|+||+||||++++|+|+++|++|++
T Consensus 454 ~~i~~~~vsf~y~~~~-------------~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I 514 (694)
T TIGR01846 454 GAITFENIRFRYAPDS-------------PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV 514 (694)
T ss_pred CeEEEEEEEEEcCCCC-------------ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 4699999999996431 148999999999999999999999999999999999999999986
No 250
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.98 E-value=4.9e-10 Score=131.69 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=55.8
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
.++++||++.|++. +.+.+++|+||++++||++||+|+|||||||++++|+|+++|++|+++
T Consensus 382 ~I~~~nVsf~Y~~~------------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 443 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR------------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDII 443 (1466)
T ss_pred cEEEEEEEEEcCCC------------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEE
Confidence 59999999999642 123599999999999999999999999999999999999999999873
No 251
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.98 E-value=1.2e-07 Score=106.30 Aligned_cols=293 Identities=20% Similarity=0.202 Sum_probs=145.4
Q ss_pred HHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc--cCchHHHHHHHHHHHHHHHHHHH
Q 011717 137 LVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFL--NNSFAVLFLLFFLFELNMTGFAF 214 (479)
Q Consensus 137 iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~--~~~~~~l~ll~~l~g~s~i~~~~ 214 (479)
.|.+|++..- =-.++++-++-.+.++..-++.+.++.++.+... .+. ...+...++++++...++..+-=
T Consensus 519 pv~~Khr~~~------fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~--gl~~~A~rFF~~fL~lf~~~~~~s~lFr 590 (1391)
T KOG0065|consen 519 PVFYKHRDLS------FYPPWAEALASTLLKIPSSFIESVVFVIITYFLI--GLKRNAGRFFIQFLFLFLCQFCMSGLFR 590 (1391)
T ss_pred chHHHhhccc------ccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666654331 2356999999999999888887766665543321 122 22455555556666666666666
Q ss_pred HHHHhcCCchhhhHHHHHHHHH-HHHHHHHHhhccc-cCcccchhhhhhheecCh-HHHHHHHHHHHHhcCC--CCC-cc
Q 011717 215 MFSAFISKSSSSTTIGFSVFIV-GFLTQLVTAFGFP-YSDQFSNTYRTIWSLFPP-NLLAEALQLLSDATET--PQD-IG 288 (479)
Q Consensus 215 ~~S~fF~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~P~-~~~~~~~~~i~~~~~~--~~~-~~ 288 (479)
+++...++-..|...+.+..++ .+.. ++. ...++..+++|+..+.|. +++...+. .+.... ... .|
T Consensus 591 ~ia~l~~t~~~An~~g~~~~L~i~m~~------Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~--NEF~~~~~~c~p~g 662 (1391)
T KOG0065|consen 591 FIASLSRTLSIANLIGGILLLVLFMYG------GFVIPKKDMPPWFRWIAYINPLMYAFESLMS--NEFHGRRWPCSPSG 662 (1391)
T ss_pred HHHHhcchHHHHhhHhHHHHHHHHHHc------ceeeeccccchHHHHHHHHCHHHHHHHHHHH--hhhhcccCCCCCCC
Confidence 6677767666666665443222 1111 111 234567788999888773 44433332 211110 000 00
Q ss_pred cccccCc----cCC------C---------------C-CCcccccHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCc
Q 011717 289 ISWSRRA----ECA------P---------------N-DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKS 342 (479)
Q Consensus 289 ~~~~~~~----~~~------~---------------~-~~~~~~~~~~~~~~l~~~~~ly~lL~~yld~v~p~~~g~~~~ 342 (479)
=.++|.. .|. . . ........+.++.+.++-.+++.+++-|++-...+..-+.
T Consensus 663 p~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~-- 740 (1391)
T KOG0065|consen 663 PAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILV-- 740 (1391)
T ss_pred CcccccccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceee--
Confidence 0000100 010 0 0 0001134566667777777788888888653211110000
Q ss_pred ccccccccccCCCCCCccccCccccccCCCCCCCCCCCCChhhHHHHHHHHhhhhcCCCCCCceEEEecceEEcCCCCcc
Q 011717 343 TFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKI 422 (479)
Q Consensus 343 ~~f~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dv~~e~~~~~~~~~~~~~~~~~~i~i~~l~K~y~~~~~~ 422 (479)
+++ ++.+.+.+..+. .+.. ...+|....+++..+ ....+.....+.....+|+..+-+.+.
T Consensus 741 ----~~~----~~~~~~~~~~~~------~~~~--~~~~~s~~~~~~~~~-~~~~~~~~~~~~V~~w~dl~~~~~~qG-- 801 (1391)
T KOG0065|consen 741 ----FKK----GKEKKKVKSAGS------SSEI--EKLDDSSHQEKNKMV-LPFTPLSLTFKDVFYWVDLPYEMPIQG-- 801 (1391)
T ss_pred ----ecc----chhhhcchhccc------cccc--ccccccccccccccc-CCCccccccccceEEEEeCCccccccc--
Confidence 000 000000000000 0000 000000000000000 000011112245677777776653321
Q ss_pred ccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 423 GCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 423 ~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
.++.-++|++=-+.+|-.++|+|.+||||||++++|+|-. |.|.
T Consensus 802 ---------~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~--t~G~ 845 (1391)
T KOG0065|consen 802 ---------GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRK--TGGY 845 (1391)
T ss_pred ---------cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCc--ccce
Confidence 2236899999999999999999999999999999999964 4553
No 252
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.96 E-value=6.8e-10 Score=97.46 Aligned_cols=64 Identities=22% Similarity=0.447 Sum_probs=57.2
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
..|.+++++|+-+... ..++.+++++|.|.+||-++++|+.|+||||++-+|+|+..||||+++
T Consensus 5 ~ii~~~~l~ktvg~~~-----------~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~ 68 (228)
T COG4181 5 NIIEVHHLSKTVGQGE-----------GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVR 68 (228)
T ss_pred ceeehhhhhhhhcCCC-----------cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEE
Confidence 3688999999986542 346799999999999999999999999999999999999999999873
No 253
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=6.3e-10 Score=113.62 Aligned_cols=60 Identities=28% Similarity=0.506 Sum_probs=55.9
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++|++.+|++.. .+|++|+||++.+||-++++|+.|+||||++..|+|.++|++|++
T Consensus 336 ~l~~~~vsF~y~~~~-------------~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i 395 (573)
T COG4987 336 ALELRNVSFTYPGQQ-------------TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSI 395 (573)
T ss_pred eeeeccceeecCCCc-------------cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCee
Confidence 799999999997652 259999999999999999999999999999999999999999986
No 254
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.95 E-value=7.2e-10 Score=99.34 Aligned_cols=59 Identities=29% Similarity=0.560 Sum_probs=52.6
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+.+.+++-.|.+. +..|++|+||++.+||..++|||.|+||||++|+++|..+|+.|++
T Consensus 4 l~~~~~sl~y~g~-------------~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i 62 (259)
T COG4525 4 LNVSHLSLSYEGK-------------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI 62 (259)
T ss_pred eehhheEEecCCc-------------chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceE
Confidence 5567888899653 1369999999999999999999999999999999999999999976
No 255
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.94 E-value=1.3e-09 Score=118.42 Aligned_cols=60 Identities=22% Similarity=0.390 Sum_probs=54.6
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..+++++++..|+++ ..+++|+||++++||.+++.|+||+||||++++|+|+++|++|++
T Consensus 339 ~~i~~~~v~f~y~~~--------------~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I 398 (592)
T PRK10790 339 GRIDIDNVSFAYRDD--------------NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI 398 (592)
T ss_pred CeEEEEEEEEEeCCC--------------CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE
Confidence 359999999999532 148999999999999999999999999999999999999999986
No 256
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.94 E-value=1.4e-09 Score=118.01 Aligned_cols=60 Identities=22% Similarity=0.347 Sum_probs=54.7
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++|++..|+++ ...++|+||++++||.+++.|+||+||||++++|+|+++|++|++
T Consensus 333 ~~I~~~~vsf~y~~~--------------~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I 392 (588)
T PRK13657 333 GAVEFDDVSFSYDNS--------------RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI 392 (588)
T ss_pred CeEEEEEEEEEeCCC--------------CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence 369999999999632 147999999999999999999999999999999999999999986
No 257
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.94 E-value=1.3e-09 Score=118.14 Aligned_cols=62 Identities=23% Similarity=0.367 Sum_probs=55.4
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++|++..|++.. .+.+++|+||++++||..++.|+||+||||+++.|+|+++|++|++
T Consensus 336 ~~i~~~~v~f~y~~~~------------~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I 397 (576)
T TIGR02204 336 GEIEFEQVNFAYPARP------------DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI 397 (576)
T ss_pred ceEEEEEEEEECCCCC------------CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence 4699999999996421 1258999999999999999999999999999999999999999986
No 258
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.93 E-value=9.3e-10 Score=105.48 Aligned_cols=75 Identities=23% Similarity=0.373 Sum_probs=60.1
Q ss_pred ceEEEecceEEcCCCCc-------ccccc--ccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC
Q 011717 405 VAVQIRGLVKTFPGTRK-------IGCCC--KCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG 475 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~-------~~~~~--~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs 475 (479)
..++++|+.|.|++... .|.-. ..++..-+..|+|+||+|++||||.+.|-.|+||||++++|.++.+||+
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 46899999999975421 00000 0134556789999999999999999999999999999999999999999
Q ss_pred cccC
Q 011717 476 GDGC 479 (479)
Q Consensus 476 G~a~ 479 (479)
|+++
T Consensus 83 G~il 86 (386)
T COG4175 83 GEIL 86 (386)
T ss_pred ceEE
Confidence 9873
No 259
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.90 E-value=2.1e-09 Score=116.34 Aligned_cols=62 Identities=21% Similarity=0.363 Sum_probs=55.5
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
..++++|++..|++.. ...++|+||.+++||+.++.|+||+||||+++.|+|+++|++|+++
T Consensus 329 ~~i~~~~v~f~y~~~~-------------~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~ 390 (571)
T TIGR02203 329 GDVEFRNVTFRYPGRD-------------RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390 (571)
T ss_pred CeEEEEEEEEEcCCCC-------------CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE
Confidence 4599999999996431 1479999999999999999999999999999999999999999873
No 260
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=2e-09 Score=113.75 Aligned_cols=63 Identities=24% Similarity=0.373 Sum_probs=57.9
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
...|+.+|++..|+.+ |++..++|+||++++||+++|+||+|.||||..++|--++.||+|++
T Consensus 463 ~G~IeF~~VsFaYP~R------------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I 525 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTR------------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI 525 (716)
T ss_pred cceEEEEEeeeecCCC------------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 4579999999999753 45578999999999999999999999999999999999999999986
No 261
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.88 E-value=2.9e-09 Score=110.60 Aligned_cols=63 Identities=19% Similarity=0.403 Sum_probs=55.8
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC----Cccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT----GGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT----sG~a 478 (479)
..++++||++.|.... ..+.||+|+||+|.+||++|++|-.|+|||||...|.|++++. +|++
T Consensus 4 ~lL~V~nL~v~~~~~~-----------~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I 70 (539)
T COG1123 4 PLLEVENLTVEFATDG-----------GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEV 70 (539)
T ss_pred ceEEEeceEEEEecCC-----------cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEE
Confidence 3799999999997541 2357999999999999999999999999999999999999987 6765
No 262
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.87 E-value=2.3e-09 Score=119.57 Aligned_cols=64 Identities=27% Similarity=0.476 Sum_probs=58.6
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
+..++.+|++++|+.+ +++..++|+||.|++||+++|+||+|+||||.+++|.+++.|++|+++
T Consensus 348 ~g~ief~nV~FsYPsR------------pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~ 411 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSR------------PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVL 411 (1228)
T ss_pred ccceEEEEEEecCCCC------------CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEE
Confidence 4579999999999753 356789999999999999999999999999999999999999999874
No 263
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.87 E-value=2.7e-09 Score=103.40 Aligned_cols=61 Identities=23% Similarity=0.561 Sum_probs=52.5
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a 478 (479)
++|+||+-.|.... +.+.||+|+||++++||++||+|-.|+|||||-+.|.|++++ ++|++
T Consensus 2 L~v~nL~v~f~~~~-----------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i 67 (316)
T COG0444 2 LEVKNLSVSFPTDA-----------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEI 67 (316)
T ss_pred ceEeeeEEEEecCC-----------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEE
Confidence 67899999996532 245799999999999999999999999999999999999983 55654
No 264
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.86 E-value=3.9e-09 Score=114.55 Aligned_cols=60 Identities=27% Similarity=0.338 Sum_probs=52.4
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
..++++|++..|.++ ..+++|+||++++||.++++|++|+||||+++.|.|++ |++|+++
T Consensus 348 ~~i~~~~vsf~~~~~--------------~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~ 407 (588)
T PRK11174 348 VTIEAEDLEILSPDG--------------KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLK 407 (588)
T ss_pred ceEEEEeeEEeccCC--------------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEE
Confidence 359999998665332 15899999999999999999999999999999999999 9999863
No 265
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.80 E-value=6.1e-09 Score=94.86 Aligned_cols=57 Identities=30% Similarity=0.597 Sum_probs=51.6
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG 475 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs 475 (479)
...++++||+..|++. +|++|+|+.+++++|++|+||.|+||||++++|--+....+
T Consensus 5 ~~~~~~~~l~~yYg~~---------------~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~ 61 (253)
T COG1117 5 IPAIEVRDLNLYYGDK---------------HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIP 61 (253)
T ss_pred cceeEecceeEEECch---------------hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCc
Confidence 4679999999999642 79999999999999999999999999999999998877666
No 266
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.80 E-value=8.2e-09 Score=111.55 Aligned_cols=61 Identities=23% Similarity=0.432 Sum_probs=55.5
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
..++++|++..|+++ +.+++|+||++++||.+|+.|++||||||+++.|.|+++|++|+++
T Consensus 327 ~~I~f~~vsf~y~~~--------------~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~ 387 (567)
T COG1132 327 GSIEFENVSFSYPGK--------------KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL 387 (567)
T ss_pred CeEEEEEEEEEcCCC--------------CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEE
Confidence 449999999999642 1589999999999999999999999999999999999999999863
No 267
>PLN03130 ABC transporter C family member; Provisional
Probab=98.79 E-value=8.2e-09 Score=122.68 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=55.7
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
..|+++|++..|++.. ..+++|+||++++||.+|++|++||||||+++.|.|+++|++|+++
T Consensus 1236 g~I~f~nVsf~Y~~~~-------------~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~ 1297 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPEL-------------PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRIL 1297 (1622)
T ss_pred CcEEEEEEEEEeCCCC-------------CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEE
Confidence 4699999999995421 1589999999999999999999999999999999999999999863
No 268
>PLN03232 ABC transporter C family member; Provisional
Probab=98.77 E-value=9.8e-09 Score=121.70 Aligned_cols=62 Identities=16% Similarity=0.255 Sum_probs=55.5
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
..|+++|++..|++.. ..+++|+||++++||.+|++|++||||||++++|.|+++|++|++.
T Consensus 1233 g~I~f~nVsf~Y~~~~-------------~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~ 1294 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGL-------------PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIM 1294 (1495)
T ss_pred CcEEEEEEEEEECCCC-------------CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEE
Confidence 3599999999995321 1589999999999999999999999999999999999999999863
No 269
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.77 E-value=7e-09 Score=90.88 Aligned_cols=45 Identities=18% Similarity=0.435 Sum_probs=43.1
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
..++++||.|.+||-.++.||.|+||||++++++-+.+||+|+.+
T Consensus 17 ~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~ 61 (223)
T COG4619 17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61 (223)
T ss_pred eeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEE
Confidence 579999999999999999999999999999999999999999864
No 270
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.76 E-value=1.1e-08 Score=121.43 Aligned_cols=61 Identities=18% Similarity=0.297 Sum_probs=55.1
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++|+++.|++.. ..+++|+||++++||+++++|+||+||||++++|.|+++|++|++
T Consensus 635 ~~i~~~~~~~~~~~~~-------------~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i 695 (1522)
T TIGR00957 635 NSITVHNATFTWARDL-------------PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 695 (1522)
T ss_pred CcEEEEEeEEEcCCCC-------------CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEE
Confidence 3699999999996421 158999999999999999999999999999999999999999986
No 271
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.76 E-value=1.3e-08 Score=100.34 Aligned_cols=62 Identities=23% Similarity=0.372 Sum_probs=55.2
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
-..++.+|++..|.... --|.-+|+++++||++=|.|.||+||||..+.|||+++|.+|+++
T Consensus 320 ~~~lelrnvrfay~~~~--------------FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ 381 (546)
T COG4615 320 WKTLELRNVRFAYQDNA--------------FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381 (546)
T ss_pred ccceeeeeeeeccCccc--------------ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCcee
Confidence 35799999999996531 248899999999999999999999999999999999999999874
No 272
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.75 E-value=6.7e-09 Score=113.04 Aligned_cols=46 Identities=28% Similarity=0.393 Sum_probs=42.2
Q ss_pred CcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC---Cccc
Q 011717 433 PYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDG 478 (479)
Q Consensus 433 ~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT---sG~a 478 (479)
++.+++|+|+.+++||+++++|+|||||||++++|+|..+|+ +|++
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i 85 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSV 85 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEE
Confidence 457999999999999999999999999999999999998875 6765
No 273
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.75 E-value=1.1e-08 Score=102.90 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=63.3
Q ss_pred hhHHHHHHHHhhhh-cCCCCCCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHH
Q 011717 384 DVLEEENMVKQQIR-ESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTT 462 (479)
Q Consensus 384 dv~~e~~~~~~~~~-~~~~~~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTT 462 (479)
|..+|++.+.+... .+....+..|+.+|++..|..+ +..++|+||++++|+..+|+||.||||||
T Consensus 514 dllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~--------------k~vl~disF~v~pGktvAlVG~SGaGKST 579 (790)
T KOG0056|consen 514 DLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPG--------------KPVLSDISFTVQPGKTVALVGPSGAGKST 579 (790)
T ss_pred HHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCC--------------CceeecceEEecCCcEEEEECCCCCchhH
Confidence 44455444443221 2222345689999999999543 26899999999999999999999999999
Q ss_pred HHHHHhCCCCCCCccc
Q 011717 463 TISCLTGITPVTGGDG 478 (479)
Q Consensus 463 t~~mLtG~~~pTsG~a 478 (479)
.|++|-..+..++|.+
T Consensus 580 imRlLfRffdv~sGsI 595 (790)
T KOG0056|consen 580 IMRLLFRFFDVNSGSI 595 (790)
T ss_pred HHHHHHHHhhccCceE
Confidence 9999999999999975
No 274
>PTZ00243 ABC transporter; Provisional
Probab=98.73 E-value=1.4e-08 Score=120.52 Aligned_cols=62 Identities=19% Similarity=0.323 Sum_probs=55.7
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
..|+++|++..|+++. ..+++|+||+|++||.+|++|++||||||+++.|.|+++|++|+++
T Consensus 1307 G~I~f~nVsf~Y~~~~-------------~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~ 1368 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGL-------------PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIR 1368 (1560)
T ss_pred CeEEEEEEEEEeCCCC-------------CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 3599999999996431 1589999999999999999999999999999999999999999863
No 275
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=2.2e-08 Score=102.58 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=55.4
Q ss_pred CCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 403 ~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
.+..|+.+|++..|+.++ +.++|+||+|++||-+|+.|.||+||||.+++|-+.+. .+|+++
T Consensus 348 ~~~~I~F~dV~f~y~~k~--------------~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~ 409 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYGPKR--------------KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSIL 409 (591)
T ss_pred CCCcEEEEeeEEEeCCCC--------------ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEE
Confidence 345699999999996542 48999999999999999999999999999999999999 999864
No 276
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.70 E-value=2e-08 Score=119.30 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=55.9
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
..|+++|++..|+++. ..+++|+||++++||.+|++|++||||||+++.|.|+++|++|+++
T Consensus 1283 g~I~f~nVsf~Y~~~~-------------~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~ 1344 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDL-------------DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEII 1344 (1522)
T ss_pred CcEEEEEEEEEeCCCC-------------cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEE
Confidence 4699999999996431 1589999999999999999999999999999999999999999863
No 277
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.70 E-value=1.8e-08 Score=87.72 Aligned_cols=57 Identities=23% Similarity=0.451 Sum_probs=53.2
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
.|+++++.+.|+.. .|+-|++|+-++||...||||.||||||+++.|.=+..|.+|+
T Consensus 2 sirv~~in~~yg~~---------------q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~ 58 (242)
T COG4161 2 SIQLNGINCFYGAH---------------QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58 (242)
T ss_pred ceEEcccccccccc---------------hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCe
Confidence 58999999999654 5999999999999999999999999999999999999999996
No 278
>PLN03140 ABC transporter G family member; Provisional
Probab=98.69 E-value=1.3e-08 Score=119.47 Aligned_cols=49 Identities=29% Similarity=0.356 Sum_probs=45.1
Q ss_pred CCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC---Cccc
Q 011717 430 KTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDG 478 (479)
Q Consensus 430 ~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT---sG~a 478 (479)
|+.++.+++|+|+.+++||+++|||||||||||++++|+|.++|+ +|++
T Consensus 174 k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I 225 (1470)
T PLN03140 174 KKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEI 225 (1470)
T ss_pred CCccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEE
Confidence 334667999999999999999999999999999999999999998 8876
No 279
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.67 E-value=3.1e-08 Score=116.74 Aligned_cols=58 Identities=17% Similarity=0.227 Sum_probs=51.5
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT 474 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT 474 (479)
..|+++||+..|+++ ++..+++|+||++++||++||+|++|+||||++++|.|+++|+
T Consensus 1164 g~I~f~nVsF~Y~~~------------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~ 1221 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR------------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLK 1221 (1466)
T ss_pred ceEEEEEEEEECCCC------------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCc
Confidence 469999999999642 1225899999999999999999999999999999999999993
No 280
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.66 E-value=1.6e-08 Score=103.37 Aligned_cols=62 Identities=29% Similarity=0.370 Sum_probs=55.6
Q ss_pred CCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 403 ~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+.+.+.+.|++..|.+.. .-.++++|++..++-.+++|||||||||++++++|++.|+.|.+
T Consensus 386 p~pvi~~~nv~F~y~~~~--------------~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~v 447 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNP--------------MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMV 447 (614)
T ss_pred CCCeEEEeccccCCCCcc--------------hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccc
Confidence 367899999999996542 36899999999999999999999999999999999999999975
No 281
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.66 E-value=2e-08 Score=118.04 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=43.1
Q ss_pred CCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC----CCCCccc
Q 011717 432 SPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT----PVTGGDG 478 (479)
Q Consensus 432 ~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~----~pTsG~a 478 (479)
+++.+++|+|+.+++||+++|+|+|||||||++++|+|+. +|++|++
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I 122 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVI 122 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEE
Confidence 4457999999999999999999999999999999999986 5789986
No 282
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.64 E-value=3.6e-08 Score=81.36 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=32.9
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
.|+++++|.+++||+++|+|++|+||||++++|.
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 6999999999999999999999999999999986
No 283
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.61 E-value=3e-08 Score=87.83 Aligned_cols=60 Identities=20% Similarity=0.456 Sum_probs=55.3
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+.+.++||.|.|+.. ..++++||...+|++.+++|..|+||||.+++|.=+..|+.|.+
T Consensus 4 ~~~l~v~dlHK~~G~~---------------eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I 63 (256)
T COG4598 4 ENALEVEDLHKRYGEH---------------EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI 63 (256)
T ss_pred ccceehhHHHhhcccc---------------hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceE
Confidence 3578999999999643 58999999999999999999999999999999999999999975
No 284
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.60 E-value=6.5e-08 Score=114.66 Aligned_cols=61 Identities=25% Similarity=0.383 Sum_probs=54.3
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
..|+++||+..|++.. ..+++|+||+|++||.+|++|++||||||++++|.|+++ ++|+++
T Consensus 1216 g~I~f~nVs~~Y~~~~-------------~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~ 1276 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAG-------------RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQ 1276 (1490)
T ss_pred CeEEEEEEEEEeCCCC-------------cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEE
Confidence 4699999999996431 258999999999999999999999999999999999997 899863
No 285
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.57 E-value=1.2e-07 Score=96.41 Aligned_cols=63 Identities=30% Similarity=0.522 Sum_probs=54.6
Q ss_pred CCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 403 ~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
++..+.++++...=++. +++.|+|+||.+.+||..|++||.|+||||+-++|+|..+|++|.+
T Consensus 331 P~g~L~Ve~l~~~PPg~-------------~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~V 393 (580)
T COG4618 331 PQGALSVERLTAAPPGQ-------------KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSV 393 (580)
T ss_pred CCceeeEeeeeecCCCC-------------CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcE
Confidence 45678899887755433 1368999999999999999999999999999999999999999986
No 286
>PTZ00243 ABC transporter; Provisional
Probab=98.56 E-value=5.9e-08 Score=115.25 Aligned_cols=45 Identities=22% Similarity=0.404 Sum_probs=43.2
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 434 ~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+.+++|+||.+++||+++++|+|||||||++++|.|+++|++|++
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i 717 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV 717 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence 368999999999999999999999999999999999999999986
No 287
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.51 E-value=8.9e-08 Score=113.54 Aligned_cols=44 Identities=23% Similarity=0.416 Sum_probs=42.7
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+++|+||++++||+++++|+|||||||++++|.|+.+|++|++
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i 483 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI 483 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 58999999999999999999999999999999999999999986
No 288
>PLN03232 ABC transporter C family member; Provisional
Probab=98.49 E-value=2e-07 Score=110.69 Aligned_cols=62 Identities=19% Similarity=0.298 Sum_probs=54.5
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++|++..|++.. +...++|+||++++||.+++.|++|+||||+++.|.|+++|++|.+
T Consensus 613 ~~I~~~~vsF~y~~~~------------~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i 674 (1495)
T PLN03232 613 PAISIKNGYFSWDSKT------------SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS 674 (1495)
T ss_pred CcEEEEeeEEEcCCCC------------CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCE
Confidence 3699999999996421 1257999999999999999999999999999999999999999853
No 289
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.47 E-value=8.3e-08 Score=98.32 Aligned_cols=40 Identities=18% Similarity=0.356 Sum_probs=37.8
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG 476 (479)
.|++++|+++++||+++|+|++|+||||+++ .|+..|++|
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sG 59 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEG 59 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCC
Confidence 5999999999999999999999999999999 788888888
No 290
>PLN03130 ABC transporter C family member; Provisional
Probab=98.46 E-value=2.2e-07 Score=110.76 Aligned_cols=62 Identities=19% Similarity=0.337 Sum_probs=54.9
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC-ccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG-GDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs-G~a 478 (479)
..++++|++..|++.. +..+++|+||++++||.+++.|++|+||||+++.|.|+++|++ |++
T Consensus 613 ~~I~~~nvsf~y~~~~------------~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I 675 (1622)
T PLN03130 613 PAISIKNGYFSWDSKA------------ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASV 675 (1622)
T ss_pred CceEEEeeEEEccCCC------------CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceE
Confidence 3699999999996421 1258999999999999999999999999999999999999999 875
No 291
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.44 E-value=3.6e-07 Score=90.60 Aligned_cols=72 Identities=24% Similarity=0.370 Sum_probs=59.7
Q ss_pred CCCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 402 DPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 402 ~~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+.+..++.++++..|+-+.++ +++....++|||++||++.+||-.||+|..|+||||+=..|.++++++ |++
T Consensus 272 ~~~~ll~~~~v~v~f~i~~g~----~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I 343 (534)
T COG4172 272 DAPVLLEVEDLRVWFPIKGGF----LRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEI 343 (534)
T ss_pred CCCceEEecceEEEEecCCcc----ccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceE
Confidence 446789999999999765321 112334578999999999999999999999999999999999999877 765
No 292
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.43 E-value=2.1e-07 Score=104.24 Aligned_cols=62 Identities=26% Similarity=0.419 Sum_probs=57.3
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..|+.+|++..|+. +|.+..++|+||+|++||-++|+||.|+||||.+++|...+.|++|.+
T Consensus 986 G~I~~~~V~F~YPs------------RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V 1047 (1228)
T KOG0055|consen 986 GDIEFRNVSFAYPT------------RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKV 1047 (1228)
T ss_pred eEEEEeeeEeeCCC------------CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 35999999999974 356689999999999999999999999999999999999999999986
No 293
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.42 E-value=4.8e-07 Score=81.97 Aligned_cols=59 Identities=29% Similarity=0.459 Sum_probs=51.1
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG 476 (479)
+.+|+++++...|+... +.+-|+|++++.|.-.-|+|.|||||||++++|.|-.-.-.|
T Consensus 11 ~~aievsgl~f~y~~~d--------------P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~ 69 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD--------------PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGG 69 (291)
T ss_pred cceEEEeccEEecccCC--------------ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCC
Confidence 56899999999997542 579999999999999999999999999999999996544334
No 294
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.28 E-value=5.9e-07 Score=92.26 Aligned_cols=40 Identities=33% Similarity=0.468 Sum_probs=38.2
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG 475 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs 475 (479)
.|+|++ +.+.+||+++|+|+||+||||+++||+|..+|+.
T Consensus 144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv 183 (434)
T PRK07196 144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADV 183 (434)
T ss_pred eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCe
Confidence 599999 9999999999999999999999999999988875
No 295
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.26 E-value=1.1e-06 Score=88.36 Aligned_cols=57 Identities=30% Similarity=0.429 Sum_probs=45.3
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
..+...+++|.|++.+ +.-=.=.+++|||.|+|||||-||||..++|+|.++|++|.
T Consensus 341 ~lv~y~~~~k~~g~F~----------------L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~ 397 (591)
T COG1245 341 TLVEYPDLKKTYGDFK----------------LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS 397 (591)
T ss_pred eeeecchheeecCceE----------------EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC
Confidence 4577778888886431 22122356889999999999999999999999999999994
No 296
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.26 E-value=1.5e-06 Score=99.62 Aligned_cols=64 Identities=19% Similarity=0.292 Sum_probs=57.6
Q ss_pred CCCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 402 DPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 402 ~~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..+..|+++|++-.|..... .+++|+||.|++||.+|++|..||||||+++.|=.+..|++|++
T Consensus 1134 P~~G~I~f~~~~~RYrp~lp-------------~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I 1197 (1381)
T KOG0054|consen 1134 PSKGEIEFEDLSLRYRPNLP-------------LVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEI 1197 (1381)
T ss_pred CCCCeEEEEEeEEEeCCCCc-------------chhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeE
Confidence 34567999999999965421 68999999999999999999999999999999999999999986
No 297
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.25 E-value=1.9e-06 Score=88.63 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=53.1
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
...+..++++|.|..+ ..|+|.++ .+.+||+.+|+|++|+||||+++||+|+..|+.|.+
T Consensus 137 p~~~~r~~v~~~l~TG--------------i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv 196 (450)
T PRK06002 137 PPAMTRARVETGLRTG--------------VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVI 196 (450)
T ss_pred CCCeEeecceEEcCCC--------------cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeee
Confidence 5678999999999643 25899996 999999999999999999999999999999998754
No 298
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.19 E-value=2.6e-06 Score=87.49 Aligned_cols=57 Identities=28% Similarity=0.511 Sum_probs=51.5
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG 475 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs 475 (479)
...+++.++++.|.+. .-++|.+|.+.+||-.||+|+||+||||.++.|+|-..|..
T Consensus 73 s~dvk~~sls~s~~g~---------------~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p 129 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHGV---------------ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIP 129 (614)
T ss_pred cccceeeeeeeccCCc---------------eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCC
Confidence 4579999999999653 57999999999999999999999999999999999888764
No 299
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.16 E-value=3.8e-06 Score=91.04 Aligned_cols=64 Identities=25% Similarity=0.394 Sum_probs=51.2
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC---CCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV---TGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p---TsG~a 478 (479)
..+..++++-.-+++. ++.+.-+||+|..+++||+.|++|+.||||||++++|+|-.+. ++|++
T Consensus 24 ~~~~~~~~~~~~~~~~----------~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~i 90 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKS----------KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEI 90 (613)
T ss_pred ceeEEEEEEEEecCCC----------CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEE
Confidence 4466777766654321 1345789999999999999999999999999999999998864 77765
No 300
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.11 E-value=8.6e-07 Score=92.26 Aligned_cols=42 Identities=29% Similarity=0.442 Sum_probs=36.1
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG 476 (479)
.++++.+..+.+|+|++|+|+||+|||||+.+|++.+.+..|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G 285 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHG 285 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcC
Confidence 356667777788999999999999999999999998876665
No 301
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.10 E-value=6.8e-06 Score=85.07 Aligned_cols=62 Identities=27% Similarity=0.456 Sum_probs=54.8
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+..+++++++-.=+++ + -+-|+||||.|++|+-.-+-|+||.|||+++++|.|+-+-++|..
T Consensus 431 Dn~i~~e~v~l~tPt~-g------------~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l 492 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTN-G------------DLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKL 492 (659)
T ss_pred cceEEeeeeeecCCCC-C------------ceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeE
Confidence 4789999998887653 1 157999999999999999999999999999999999999999864
No 302
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.10 E-value=6.7e-06 Score=71.05 Aligned_cols=39 Identities=31% Similarity=0.543 Sum_probs=36.1
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT 474 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT 474 (479)
-+.++|++|.+|||..|.||.|+||||+++-+.|-+.+.
T Consensus 17 LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~ 55 (213)
T COG4136 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQ 55 (213)
T ss_pred EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccC
Confidence 588999999999999999999999999999999977653
No 303
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.08 E-value=3.7e-06 Score=83.47 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=39.6
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
.|+|++ +.+.+||+.+++|+||+||||++++|+|...|+.|.
T Consensus 58 ~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~v 99 (326)
T cd01136 58 RAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNV 99 (326)
T ss_pred EEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEE
Confidence 599999 999999999999999999999999999999988653
No 304
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.04 E-value=5.9e-06 Score=82.15 Aligned_cols=59 Identities=27% Similarity=0.469 Sum_probs=51.6
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV 473 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p 473 (479)
.+.+.++||+..|.... ..+.||+++||++++||.++|+|..|+|||-|..-+.|+++-
T Consensus 4 ~~lL~v~nLsV~f~~~~-----------~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~ 62 (534)
T COG4172 4 MPLLSIRNLSVAFHQEG-----------GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPS 62 (534)
T ss_pred CcceeeeccEEEEecCC-----------cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCC
Confidence 45799999999996432 245799999999999999999999999999999999998864
No 305
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=4.3e-06 Score=83.57 Aligned_cols=62 Identities=26% Similarity=0.431 Sum_probs=55.3
Q ss_pred CCCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 402 DPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 402 ~~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
-.++.+-+++++..|++.. +-.++|+|+|.-..-++++||||-||||+++.|+|-+.|+.|+
T Consensus 582 L~PPvLGlH~VtFgy~gqk--------------pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE 643 (807)
T KOG0066|consen 582 LNPPVLGLHDVTFGYPGQK--------------PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGE 643 (807)
T ss_pred CCCCeeecccccccCCCCC--------------chhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcch
Confidence 3457888999999997642 4688999999999999999999999999999999999999996
No 306
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.00 E-value=5.8e-06 Score=77.17 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=33.4
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
.+.+|++++..+|++++|.||||+||||++++++|
T Consensus 17 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 17 FIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred EEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999999999999999999984
No 307
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.98 E-value=6.3e-06 Score=83.08 Aligned_cols=34 Identities=32% Similarity=0.508 Sum_probs=31.7
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 444 v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
..+|+++||||+||-||||+++||+|.+.|.=|+
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~ 130 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGR 130 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCC
Confidence 4689999999999999999999999999998775
No 308
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.97 E-value=7e-06 Score=84.39 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=50.5
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
..++..+.+++.+..+ +.|+|++ +.+.+||..+|+|+||+||||++++|+|...++.|.
T Consensus 127 p~~~~r~~v~~~l~tG--------------i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~v 185 (433)
T PRK07594 127 PPAMVRQPITQPLMTG--------------IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNV 185 (433)
T ss_pred CCceeccCHhheeCCC--------------ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEE
Confidence 3467777788887432 2699999 999999999999999999999999999999988763
No 309
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.96 E-value=6.2e-06 Score=85.32 Aligned_cols=43 Identities=23% Similarity=0.286 Sum_probs=40.7
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.|+|++ +.+.+||+.+|+|+||+||||++++|+|..+|+.|.+
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI 189 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVI 189 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEE
Confidence 589999 9999999999999999999999999999999998853
No 310
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.96 E-value=1.7e-05 Score=91.08 Aligned_cols=65 Identities=26% Similarity=0.441 Sum_probs=56.1
Q ss_pred CCCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 402 DPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 402 ~~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+.+..+.+++.+....+.. +...++|+||.|++||..|+.|+-|+|||++++.|.|+.+.++|++
T Consensus 514 ~~~~~i~i~~~sfsW~~~~------------~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v 578 (1381)
T KOG0054|consen 514 AGENAIEIKNGSFSWDSES------------PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSV 578 (1381)
T ss_pred CCCceEEEeeeeEecCCCC------------CcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceE
Confidence 3456899999888875421 2248999999999999999999999999999999999999999975
No 311
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.90 E-value=1.2e-05 Score=82.90 Aligned_cols=39 Identities=26% Similarity=0.497 Sum_probs=37.2
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT 474 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT 474 (479)
.|+|++ +.+.+||+.+|+|+||+||||+++||+|...|+
T Consensus 157 ~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~d 195 (451)
T PRK05688 157 RSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD 195 (451)
T ss_pred eeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 699999 999999999999999999999999999988775
No 312
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=97.89 E-value=9.9e-06 Score=80.78 Aligned_cols=45 Identities=24% Similarity=0.398 Sum_probs=40.3
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC--------CCCCCccc
Q 011717 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--------TPVTGGDG 478 (479)
Q Consensus 434 ~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~--------~~pTsG~a 478 (479)
-.+++|++|.+++||+.++.|..||||||+++||.|. +.|+||.+
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v 448 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKV 448 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCce
Confidence 3689999999999999999999999999999999984 56777754
No 313
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=97.89 E-value=8.2e-06 Score=76.77 Aligned_cols=32 Identities=34% Similarity=0.542 Sum_probs=26.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhC-CCCCCCc
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLTG-ITPVTGG 476 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLtG-~~~pTsG 476 (479)
.+||+++|+|+|||||||+++.|++ ++.+.++
T Consensus 26 ~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~ 58 (213)
T cd03279 26 DNNGLFLICGPTGAGKSTILDAITYALYGKTPR 58 (213)
T ss_pred CccCEEEEECCCCCCHHHHHHHheeeEecCccc
Confidence 5699999999999999999999996 4444433
No 314
>PRK08149 ATP synthase SpaL; Validated
Probab=97.88 E-value=1.4e-05 Score=82.16 Aligned_cols=40 Identities=25% Similarity=0.368 Sum_probs=38.0
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG 475 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs 475 (479)
.|+|++ +.+.+||+.+|+|+||+||||+++||+|...++.
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv 179 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADV 179 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCe
Confidence 699999 9999999999999999999999999999888775
No 315
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.86 E-value=1.4e-05 Score=82.52 Aligned_cols=42 Identities=21% Similarity=0.384 Sum_probs=39.7
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
.++|++ +.+.+||+.+++|+||+||||++++|+|...++.|.
T Consensus 152 ~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~v 193 (441)
T PRK09099 152 RIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNV 193 (441)
T ss_pred eeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEE
Confidence 599999 999999999999999999999999999999988764
No 316
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.85 E-value=1.5e-05 Score=74.39 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=27.4
Q ss_pred eeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 437 V~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
+--.++.+.+|++++|.|+||+||||++++|.
T Consensus 19 ~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 19 FVPNDINLGSGRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEeeeEEEcCCeEEEEECCCCCccHHHHHHHH
Confidence 34445666689999999999999999999999
No 317
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.84 E-value=1.4e-05 Score=84.05 Aligned_cols=53 Identities=26% Similarity=0.436 Sum_probs=47.8
Q ss_pred ecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 410 RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 410 ~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
.|+++.|+.. .|++++++.+..|+..+|.|+||+||||+++.|.|+++|.+|+
T Consensus 188 ~d~~~v~Gq~---------------~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~ 240 (506)
T PRK09862 188 HDLSDVIGQE---------------QGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE 240 (506)
T ss_pred cCeEEEECcH---------------HHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCc
Confidence 4788888432 5899999999999999999999999999999999999999986
No 318
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.81 E-value=1.5e-05 Score=82.57 Aligned_cols=41 Identities=24% Similarity=0.411 Sum_probs=39.0
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG 476 (479)
.|+|++ +.+.+||+.+|+|+||+||||++++|+|...|+.|
T Consensus 152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~ 192 (440)
T TIGR01026 152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVN 192 (440)
T ss_pred eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEE
Confidence 699999 99999999999999999999999999999988865
No 319
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.81 E-value=1.4e-05 Score=82.64 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=39.8
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
.|+|++ +.+.+||+.+|+|+||+||||++++|+|...|+.|.
T Consensus 134 ~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~v 175 (422)
T TIGR02546 134 RAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNV 175 (422)
T ss_pred eeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEE
Confidence 599999 999999999999999999999999999999998764
No 320
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.81 E-value=1.1e-05 Score=76.73 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=29.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..+.||.|+|||||||+.+.|+|.+++++|.+
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~ 64 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGELP 64 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence 47999999999999999999999999999863
No 321
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=8.4e-06 Score=88.85 Aligned_cols=41 Identities=29% Similarity=0.434 Sum_probs=35.7
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG 476 (479)
.+++.++.+.+|+|++|+||||+|||||+.+|++.+....|
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G 214 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREG 214 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcC
Confidence 46667777888999999999999999999999998866665
No 322
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.79 E-value=2.7e-05 Score=80.15 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=49.6
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++..+.+++.|..+ ..|+|++ +.+.+||..+++|+||+||||++++|+|..+|+.|.+
T Consensus 129 ~~~~r~~i~~~l~TG--------------iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI 187 (432)
T PRK06793 129 HAFEREEITDVFETG--------------IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVI 187 (432)
T ss_pred CchheechhhccCCC--------------CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEE
Confidence 456677788877532 2588886 9999999999999999999999999999999988743
No 323
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=2.4e-05 Score=80.12 Aligned_cols=51 Identities=18% Similarity=0.402 Sum_probs=44.7
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
..-|.+.+.+-.|+++ .-+++-+|++.+|.-.||.|+||+||||++++|.-
T Consensus 78 ~~Di~~~~fdLa~G~k---------------~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGK---------------ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred ccceeeeeeeeeecch---------------hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 3458888888899653 46999999999999999999999999999999975
No 324
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.77 E-value=3.5e-05 Score=56.90 Aligned_cols=34 Identities=24% Similarity=0.536 Sum_probs=26.7
Q ss_pred eeeeEEEEeC-CcEEEEECCCCCcHHHHHHHHhCC
Q 011717 437 IKGLWVNIAK-DQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 437 V~~lsl~v~~-gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.++-.+.+.+ |.++.+.|+||+||||++..+.=.
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4445667765 569999999999999999877543
No 325
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.77 E-value=1.9e-05 Score=74.56 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=38.4
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC-CCCCCCcc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG-ITPVTGGD 477 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG-~~~pTsG~ 477 (479)
...+++++++.+|++.+|.|+||+||||++++++| .+.+..|.
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~ 62 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGS 62 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 46899999999999999999999999999999999 56666663
No 326
>PRK05922 type III secretion system ATPase; Validated
Probab=97.76 E-value=2.8e-05 Score=79.94 Aligned_cols=42 Identities=21% Similarity=0.304 Sum_probs=39.0
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
.|+|.+ +.+.+||..++.|+||+||||++++|+|..+++.|.
T Consensus 146 r~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gv 187 (434)
T PRK05922 146 KAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINV 187 (434)
T ss_pred eeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceE
Confidence 488887 999999999999999999999999999999988774
No 327
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.76 E-value=3e-05 Score=79.71 Aligned_cols=42 Identities=26% Similarity=0.363 Sum_probs=39.8
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
.|+|++ +.+.+||+.+|.|+||+||||++++|++...++.|.
T Consensus 126 ~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gv 167 (413)
T TIGR03497 126 KAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINV 167 (413)
T ss_pred eeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEE
Confidence 599999 999999999999999999999999999999988774
No 328
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.75 E-value=2.4e-05 Score=80.43 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=38.8
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
.|+| .++.+.+||+.+|+|+||+||||+++||+|..+|+.|.
T Consensus 129 ~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gv 170 (418)
T TIGR03498 129 RVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVV 170 (418)
T ss_pred EEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEE
Confidence 4776 69999999999999999999999999999999998874
No 329
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.74 E-value=3.2e-05 Score=79.41 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=36.1
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT 474 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT 474 (479)
.|+|.+ +.+.+||+.+++|+||+||||++++|+|...++
T Consensus 151 ~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d 189 (444)
T PRK08972 151 RAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD 189 (444)
T ss_pred eeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence 588888 999999999999999999999999999987664
No 330
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.71 E-value=7.2e-05 Score=79.30 Aligned_cols=61 Identities=21% Similarity=0.371 Sum_probs=54.0
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+..|.++||+-.=++.+ .-|++++++|++||-.-+.|+||+||||+++.|+|+-|--+|++
T Consensus 390 ~~~i~~~nl~l~~p~~~--------------~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I 450 (604)
T COG4178 390 DHGITLENLSLRTPDGQ--------------TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRI 450 (604)
T ss_pred cceeEEeeeeEECCCCC--------------eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCce
Confidence 46799999998876542 46999999999999999999999999999999999999888864
No 331
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=97.71 E-value=6.8e-05 Score=77.00 Aligned_cols=59 Identities=24% Similarity=0.372 Sum_probs=48.9
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
.+|+++|+--.-++.. +.|.+++|.+.+|--.-++||||+|||++++||.|+-|.-.|.
T Consensus 480 ~gI~lenIpvItP~~~--------------vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~ 538 (728)
T KOG0064|consen 480 NGIILENIPVITPAGD--------------VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGL 538 (728)
T ss_pred cceEEecCceeccCcc--------------eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCe
Confidence 4577777655554321 5799999999999999999999999999999999999876663
No 332
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.71 E-value=1.8e-05 Score=77.62 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=28.0
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCC--CCCccc
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGITP--VTGGDG 478 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~~--pTsG~a 478 (479)
.++|+.|+|||||||+.++|+|++. |++|++
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V 95 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKV 95 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCce
Confidence 5999999999999999999999987 777764
No 333
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.71 E-value=3.7e-05 Score=78.95 Aligned_cols=41 Identities=24% Similarity=0.412 Sum_probs=38.6
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG 476 (479)
.|+|.+ +.+.+||+.+|+|+||+||||++++|+|...|+.|
T Consensus 126 ~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~ 166 (411)
T TIGR03496 126 RAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVV 166 (411)
T ss_pred Eeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEE
Confidence 589999 99999999999999999999999999999988754
No 334
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.70 E-value=5.7e-05 Score=68.92 Aligned_cols=55 Identities=20% Similarity=0.408 Sum_probs=46.8
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
+-|+||+-.+..+. ..++|||++|+++.+|||-||+|..|+|||-.-+.|+|..+
T Consensus 4 LDIrnL~IE~~Tsq-----------G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~k 58 (330)
T COG4170 4 LDIRNLTIEFKTSQ-----------GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK 58 (330)
T ss_pred ccccceEEEEecCC-----------CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccc
Confidence 45778887775542 24579999999999999999999999999999999999764
No 335
>PRK06315 type III secretion system ATPase; Provisional
Probab=97.66 E-value=3e-05 Score=80.01 Aligned_cols=41 Identities=17% Similarity=0.379 Sum_probs=37.5
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC
Q 011717 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG 475 (479)
Q Consensus 434 ~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs 475 (479)
+.|||++ +.+.+||+.+++|.||+||||++++|+|..++++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~ 192 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEAD 192 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCC
Confidence 3699998 9999999999999999999999999999886544
No 336
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=97.61 E-value=4.4e-05 Score=78.61 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=37.1
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG 475 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs 475 (479)
.|+|.+ +.+.+||+.+|+|+||+||||++++|+|+..|+.
T Consensus 164 raID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~ 203 (455)
T PRK07960 164 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADV 203 (455)
T ss_pred eeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCE
Confidence 578887 9999999999999999999999999999998874
No 337
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.60 E-value=3.8e-05 Score=79.08 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=37.4
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG 476 (479)
.|+|++ +.+.+||+.+|+|+||+||||++++|++...++.+
T Consensus 146 ~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~ 186 (434)
T PRK08472 146 KSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIK 186 (434)
T ss_pred HHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEE
Confidence 589999 99999999999999999999999999998766544
No 338
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.59 E-value=2.9e-05 Score=77.40 Aligned_cols=34 Identities=35% Similarity=0.393 Sum_probs=30.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+|++++++|+||+|||||+..|++.+.+.+|++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V 145 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKV 145 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeE
Confidence 5689999999999999999999999988877664
No 339
>PRK06936 type III secretion system ATPase; Provisional
Probab=97.59 E-value=8.1e-05 Score=76.63 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=37.0
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT 474 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT 474 (479)
.++|++ +.+.+||+.+++|+||+||||+++||++...++
T Consensus 151 ~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~d 189 (439)
T PRK06936 151 RVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVD 189 (439)
T ss_pred ceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCC
Confidence 589999 999999999999999999999999999988765
No 340
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.58 E-value=5.1e-05 Score=74.76 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=33.4
Q ss_pred eeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 437 V~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
++.|...+. +++++++|+||+||||++|.|.|...++.|++
T Consensus 152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v 192 (287)
T cd01854 152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEI 192 (287)
T ss_pred HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccce
Confidence 344444444 58999999999999999999999998888864
No 341
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.57 E-value=5.7e-05 Score=73.44 Aligned_cols=31 Identities=23% Similarity=0.161 Sum_probs=29.2
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+-++++|+||+||||++++|+|+++|++|++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i 142 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQL 142 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceE
Confidence 6789999999999999999999999999975
No 342
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.56 E-value=6.5e-05 Score=70.84 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=31.4
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
...++++++..+ ++.+|.|+||+||||+++++.+
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHH
Confidence 479999999987 9999999999999999999964
No 343
>PRK06820 type III secretion system ATPase; Validated
Probab=97.52 E-value=9.6e-05 Score=76.25 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=38.1
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG 475 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs 475 (479)
.|+|++ +.+.+||..+|+|+||+||||++++|++...|+.
T Consensus 152 ~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv 191 (440)
T PRK06820 152 RAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADV 191 (440)
T ss_pred ceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCE
Confidence 699999 9999999999999999999999999999988775
No 344
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=5.7e-05 Score=77.61 Aligned_cols=27 Identities=41% Similarity=0.715 Sum_probs=25.0
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 444 IAKDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 444 v~~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
+.+|++++|+|+||+|||||+..|+|.
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999999985
No 345
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=97.48 E-value=0.053 Score=51.51 Aligned_cols=142 Identities=13% Similarity=0.097 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHH
Q 011717 131 VFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMT 210 (479)
Q Consensus 131 ~~~v~~iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~g~s~i 210 (479)
...-..++.|||++.-+.++.+.++...|-++..+...+..++.+++..+++.+++.+. ..+....++..+++.....
T Consensus 53 ~~~~~~i~~er~~G~l~rl~~~P~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~ 130 (232)
T TIGR00025 53 TGQAIAVARDRRYGALKRLGATPLPRLGILAGRSLAVVARVFLQTLILLVIGFVLGFRF--AGGALTALTLGAVIIALGT 130 (232)
T ss_pred HHHHHHHHHHHHhCHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--CCchHHHHHHHHHHHHHHH
Confidence 33345688999999999999999999999999987776666555444444444444332 1222222333334444445
Q ss_pred HHHHHHHHhcCCchhh---hHHHHHHHHHHHHHHHHHhhccccCcccchhhhhhheecChHHHHHHHHHHH
Q 011717 211 GFAFMFSAFISKSSSS---TTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLS 278 (479)
Q Consensus 211 ~~~~~~S~fF~~~~~a---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i~ 278 (479)
.++.+++.+....+.+ ..+..+..+ ....+.-..+|. +..+..++.+..+.|......++....
T Consensus 131 ~~~~~i~~~~~~~~~~~~~~~i~~~~~~---p~~~lSG~~~P~-~~mP~~lq~i~~~~P~t~~~~~~r~~~ 197 (232)
T TIGR00025 131 ALFAALGLVAGGTLQAEIVLAVANLVWF---IFALLSAGLVPL-NLIPTWIKWFVRVQPSSYATEALRQAA 197 (232)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHH---HHHHHhheeeec-ccccHHHHHHHHhCcHHHHHHHHHHHH
Confidence 5566677666544333 222111111 111111111232 335677888888899877777766553
No 346
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00015 Score=72.76 Aligned_cols=61 Identities=21% Similarity=0.273 Sum_probs=54.8
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
...+...+++..|... .+-++++||+++.|+.+++.|+.||||||..+.|-..+.+++|.+
T Consensus 260 ~g~v~F~~V~F~y~~~--------------r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I 320 (497)
T COG5265 260 LGAVAFINVSFAYDPR--------------RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI 320 (497)
T ss_pred cceEEEEEEEeecccc--------------chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE
Confidence 3458889999999643 257999999999999999999999999999999999999999976
No 347
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=7.7e-05 Score=75.52 Aligned_cols=37 Identities=30% Similarity=0.459 Sum_probs=33.3
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.++++.++.+.+|++++|+||||+|||||+..|++..
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4677888889999999999999999999999999754
No 348
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.41 E-value=0.057 Score=51.33 Aligned_cols=136 Identities=9% Similarity=0.159 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHHH
Q 011717 134 ISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFA 213 (479)
Q Consensus 134 v~~iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~g~s~i~~~ 213 (479)
...++.|||++.-+-+.....+...|+++..+...+..++..+++.++...+.. .........+++.++++++...++
T Consensus 67 ~~~~~~~~~~g~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~l~~~~~~~lg 144 (236)
T TIGR01247 67 GISVIWDRQFGFLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAI--LKPSGVIPTLVLAFIVGVALSGLG 144 (236)
T ss_pred hhHHHHHHHhCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345678999887777778899999999999999888877765554444333211 111233334445556778889999
Q ss_pred HHHHHhcCCchhhhHHH-HHHHHHHHHHHHHHhhccccCcccchhhhhhheecChHHHHHHHHH
Q 011717 214 FMFSAFISKSSSSTTIG-FSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQL 276 (479)
Q Consensus 214 ~~~S~fF~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~ 276 (479)
++++.++++.+.+..+. .+.....++.. ..+|. +..+..++.+..+.|......++..
T Consensus 145 ~~l~~~~~~~~~~~~i~~~~~~~l~~lsG----~~~P~-~~~P~~~~~i~~~~P~~~~~~~~r~ 203 (236)
T TIGR01247 145 VAIAARMDSMEGFQIIMSMLMLPMFFLSG----AFYPI-TTMPAWMQGLAKINPLTYAVDGARY 203 (236)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHH----hhcCH-HhCHHHHHHHHHHCcHHHHHHHHHH
Confidence 99999888876544332 22111111111 11222 2245566777778887665555544
No 349
>PRK00098 GTPase RsgA; Reviewed
Probab=97.37 E-value=0.00016 Score=71.62 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=30.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+|++++|+|+||+||||++|.|.|...+..|++
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v 195 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEI 195 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcce
Confidence 589999999999999999999999988887764
No 350
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.34 E-value=0.00029 Score=66.72 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=31.7
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
...+|++++..++++++|.||||+||||+++++.
T Consensus 18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred eEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence 4699999999999999999999999999999963
No 351
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.32 E-value=0.0001 Score=73.37 Aligned_cols=38 Identities=29% Similarity=0.344 Sum_probs=35.2
Q ss_pred eEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 440 LWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 440 lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
|++.+..|+.+++.|+||+||||+++.|+|++++..|.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~i 174 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERI 174 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccE
Confidence 66788999999999999999999999999999998774
No 352
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.32 E-value=0.0002 Score=66.62 Aligned_cols=29 Identities=31% Similarity=0.590 Sum_probs=25.3
Q ss_pred cEEEEECCCCCcHHHHHHHHh--------CCCCCCCc
Q 011717 448 QLFCLLGPNGAGKTTTISCLT--------GITPVTGG 476 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLt--------G~~~pTsG 476 (479)
++.+|.||||+||||++++|. |...|...
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~ 65 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE 65 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc
Confidence 589999999999999999999 87766554
No 353
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.29 E-value=0.00019 Score=80.81 Aligned_cols=30 Identities=33% Similarity=0.601 Sum_probs=29.2
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHH
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~ 465 (479)
.++|+++++++||++|+.|+|||||||+++
T Consensus 622 ~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 622 NLKNITVSIPLGLFTCITGVSGSGKSTLIN 651 (924)
T ss_pred CcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 699999999999999999999999999998
No 354
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.29 E-value=0.00024 Score=84.19 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=34.4
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHH---------HHhCCCCC
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTIS---------CLTGITPV 473 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~---------mLtG~~~p 473 (479)
.++++|++|++||++|+.|+|||||||+++ .|.|...+
T Consensus 610 ~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~ 656 (1809)
T PRK00635 610 NLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCS 656 (1809)
T ss_pred CccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcc
Confidence 699999999999999999999999999999 77776543
No 355
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.26 E-value=0.00091 Score=68.63 Aligned_cols=62 Identities=15% Similarity=0.288 Sum_probs=54.3
Q ss_pred CCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 403 ~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
....+++++|+-.-.. ...+|+++||+|.+|||+|+-|.-|-|-+-++..|+|+.+|.+|++
T Consensus 254 g~~vL~V~~L~v~~~~--------------~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I 315 (501)
T COG3845 254 GEVVLEVEDLSVKDRR--------------GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRI 315 (501)
T ss_pred CCeEEEEeeeEeecCC--------------CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceE
Confidence 3678999999865422 2369999999999999999999999999999999999999888976
No 356
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.21 E-value=0.00027 Score=83.62 Aligned_cols=32 Identities=56% Similarity=0.855 Sum_probs=28.0
Q ss_pred CcEEEEECCCCCcHHHHHHHH----hCCCCCC-Cccc
Q 011717 447 DQLFCLLGPNGAGKTTTISCL----TGITPVT-GGDG 478 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mL----tG~~~pT-sG~a 478 (479)
..+++++|||||||||++.+| +|..+|. +|.+
T Consensus 28 ~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~ 64 (1311)
T TIGR00606 28 SPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNT 64 (1311)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCce
Confidence 359999999999999999999 6999996 6664
No 357
>PRK01889 GTPase RsgA; Reviewed
Probab=97.19 E-value=0.00023 Score=72.32 Aligned_cols=43 Identities=26% Similarity=0.357 Sum_probs=38.0
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++.|.-.+.+|++.+++|++|+||||+++.|+|...++.|++
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i 226 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAV 226 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeE
Confidence 3566666678999999999999999999999999999999875
No 358
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.17 E-value=0.00048 Score=64.88 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=33.6
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
..-||++|+..+|++.+|.|+||+||||+++++++.
T Consensus 18 ~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 18 FVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred eEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence 468999999999999999999999999999999864
No 359
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.13 E-value=0.00096 Score=67.74 Aligned_cols=55 Identities=24% Similarity=0.346 Sum_probs=46.6
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceee-----------eeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIK-----------GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~-----------~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
...+..++|+..|++.+ .++. |+.+.+.+||..+++|+.|+||||++++|...+.
T Consensus 128 ~~ri~Fe~LTf~YP~er--------------~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 128 KNRVLFENLTPLYPNER--------------LRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCeEEEEeeecCCCcc--------------ceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 34699999999997542 2453 9999999999999999999999999999988654
No 360
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.12 E-value=0.0004 Score=78.46 Aligned_cols=32 Identities=31% Similarity=0.512 Sum_probs=30.7
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHH
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mL 467 (479)
.++|+|++|++||++|+.|+||+||||+++.+
T Consensus 624 ~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~ 655 (943)
T PRK00349 624 NLKNVDVEIPLGKFTCVTGVSGSGKSTLINET 655 (943)
T ss_pred CcCceEEEEeCCCEEEEEcCCCCCHHHHHHHH
Confidence 69999999999999999999999999999976
No 361
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=97.10 E-value=0.2 Score=48.27 Aligned_cols=136 Identities=12% Similarity=0.149 Sum_probs=87.8
Q ss_pred HHHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHHHHH
Q 011717 136 SLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFM 215 (479)
Q Consensus 136 ~iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~g~s~i~~~~~ 215 (479)
.+.+|||+|.-+.+..+-++...+-++..++..+..++..+++.++...+... ...+...++..+++++++...++++
T Consensus 81 ~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~g~~--~~~~~l~~~~~~ll~~l~~~~lg~~ 158 (253)
T TIGR01291 81 TFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTATLGYI--EWWSLIYILPVIALTGLAFASLSML 158 (253)
T ss_pred HHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999988777777655444444343321 2223444445567788888899999
Q ss_pred HHHhcCCchhhhHHH-HHHHHHHHHHHHHHhhccccCcccchhhhhhheecChHHHHHHHHHHH
Q 011717 216 FSAFISKSSSSTTIG-FSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLS 278 (479)
Q Consensus 216 ~S~fF~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i~ 278 (479)
++...++.+.+..+. .+...+.++... .+|. +..+..++.+..+.|......++....
T Consensus 159 ~a~~~~~~~~~~~i~~~i~~pl~flSg~----~~P~-~~mP~~lq~i~~~nPlt~~v~~~R~~~ 217 (253)
T TIGR01291 159 VAALAPSYAYFAFYQSLVITPMLFLSGV----VFPV-FQLNDVIQGMTHFLPLAHSIDDIRPVM 217 (253)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHH----hcCH-HhChHHHHHHHHHCcHHHHHHHHHHHH
Confidence 999887766544332 221111111111 1221 234556777778889887777776653
No 362
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.09 E-value=0.00026 Score=74.80 Aligned_cols=44 Identities=36% Similarity=0.508 Sum_probs=41.3
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.|++++++.+..|+.+.|+|+||+||||+.++|.|+++|.+|+.
T Consensus 199 ~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~ 242 (499)
T TIGR00368 199 HAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEE 242 (499)
T ss_pred HHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcE
Confidence 58999999999999999999999999999999999999998863
No 363
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.09 E-value=0.00073 Score=68.00 Aligned_cols=42 Identities=31% Similarity=0.490 Sum_probs=37.0
Q ss_pred eeeeeEEEEeCC-----cEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 436 AIKGLWVNIAKD-----QLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 436 AV~~lsl~v~~g-----ei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
-+-+..|.|..| |+..+||.||-||||.++||+|.++|+.|.
T Consensus 351 ~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~ 397 (592)
T KOG0063|consen 351 TVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG 397 (592)
T ss_pred eeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC
Confidence 466777888776 689999999999999999999999999884
No 364
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.02 E-value=0.00047 Score=81.78 Aligned_cols=33 Identities=21% Similarity=0.481 Sum_probs=30.0
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHH
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mL 467 (479)
+.++|++|++++||++||.|+||+||||++..+
T Consensus 949 ~~lk~isl~i~~gei~~itG~nGsGKStL~~~~ 981 (1809)
T PRK00635 949 HNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI 981 (1809)
T ss_pred ccccceeEEecCCcEEEEECCCCCChhHHHHHH
Confidence 469999999999999999999999999966655
No 365
>PLN02796 D-glycerate 3-kinase
Probab=97.00 E-value=0.00016 Score=72.01 Aligned_cols=39 Identities=23% Similarity=0.228 Sum_probs=31.8
Q ss_pred eeeeeEEEE---eCCcE-----EEEECCCCCcHHHHHHHHhCCCCCC
Q 011717 436 AIKGLWVNI---AKDQL-----FCLLGPNGAGKTTTISCLTGITPVT 474 (479)
Q Consensus 436 AV~~lsl~v---~~gei-----~~LLG~NGAGKTTt~~mLtG~~~pT 474 (479)
++++++..+ .+|+. +|+.|++|+||||+.+.|.+++++.
T Consensus 81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~ 127 (347)
T PLN02796 81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNAT 127 (347)
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 455666665 45565 9999999999999999999999875
No 366
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.98 E-value=0.00076 Score=60.08 Aligned_cols=31 Identities=32% Similarity=0.454 Sum_probs=24.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG 476 (479)
+|++.+|+|+.|+||||++|.|.|......|
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~ 64 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEAKQKTG 64 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS----S
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhcchhhh
Confidence 4589999999999999999999997544434
No 367
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=96.97 E-value=0.0012 Score=68.83 Aligned_cols=43 Identities=21% Similarity=0.433 Sum_probs=41.4
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++|+||++++|||+||-|-=|||+|-+...|-|..++++|++
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i 316 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEI 316 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceE
Confidence 4999999999999999999999999999999999999999986
No 368
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.95 E-value=0.00094 Score=68.93 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=35.3
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT 474 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT 474 (479)
.+=|.-+.+.+||..+++|+||+||||++++|++...|+
T Consensus 147 r~ID~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~~d 185 (442)
T PRK08927 147 RALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADAD 185 (442)
T ss_pred EEEeeeeEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 455677999999999999999999999999999988775
No 369
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.88 E-value=0.00072 Score=65.97 Aligned_cols=33 Identities=21% Similarity=0.125 Sum_probs=27.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
+.+.+++|+|+|||||||+++.|.+.+....+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~ 134 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPC 134 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCE
Confidence 356899999999999999999999877665443
No 370
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=96.84 E-value=0.12 Score=45.83 Aligned_cols=135 Identities=16% Similarity=0.191 Sum_probs=78.5
Q ss_pred HHHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHHHHH
Q 011717 136 SLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFM 215 (479)
Q Consensus 136 ~iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~g~s~i~~~~~ 215 (479)
.++.|||++.-+.++.+-++...+.++..+.+.+..++.++++++++..++.+.- .++...+..+.+..+..++++.+
T Consensus 11 ~i~~dr~~G~~~~l~~tP~~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~~g~~~~--~~~~~~~~~~~~~~l~~~~f~~l 88 (152)
T TIGR01248 11 DITIDREIGLLSRLWVLPIHRASALLARIIAETIRAFIGTILILAIALALGFRFR--NGVAAALLFLLIPSIFGIAFAAL 88 (152)
T ss_pred HHHHHHHhHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999988887777766655554432 23332333333333333444444
Q ss_pred HHHh--cCCchhhhHHHHHH-HHHHHHHHHHHhhccccCcccchhhhhhheecChHHHHHHHHHH
Q 011717 216 FSAF--ISKSSSSTTIGFSV-FIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLL 277 (479)
Q Consensus 216 ~S~f--F~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i 277 (479)
.+.+ ..+...+.....++ +...++.. ..+|. +..+..++.+..+.|-.....++..+
T Consensus 89 ~~~~a~~~~~~~~~~~~~~v~~pl~flsg----~~~P~-~~mP~wlq~ia~~~Plt~~~~~~R~~ 148 (152)
T TIGR01248 89 VMAMALRKEGRFAMEALELAQAAAAFLNP----GATPI-KLFPDWAQPLIAHQPISPAIEACADL 148 (152)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhh----hhcCH-HhCcHHHHHHHhhCCccHHHHHHHHH
Confidence 4332 23433332221111 11111111 11222 23556777777788876666665543
No 371
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.78 E-value=0.00044 Score=68.62 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=34.5
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
..+++++....+++++++.|++|+||||+++.|.+...
T Consensus 22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~ 59 (300)
T TIGR00750 22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELR 59 (300)
T ss_pred HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999988653
No 372
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.72 E-value=0.00057 Score=76.01 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=31.7
Q ss_pred eeEEEEeCC-cEEEEECCCCCcHHHHHHHHhCC-CCCCCc
Q 011717 439 GLWVNIAKD-QLFCLLGPNGAGKTTTISCLTGI-TPVTGG 476 (479)
Q Consensus 439 ~lsl~v~~g-ei~~LLG~NGAGKTTt~~mLtG~-~~pTsG 476 (479)
-+++.+.++ ++.+|.||||+||||++++++|. +.+..|
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G 352 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG 352 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC
Confidence 467778777 99999999999999999999997 444444
No 373
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.65 E-value=0.0016 Score=61.18 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=24.9
Q ss_pred eeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 437 V~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
=+|++++=..+.+..|.|+||+||||+++.+.
T Consensus 19 pnd~~l~~~~~~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 19 PNDTEIGGGGPSIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred cceEEecCCCceEEEEECCCCCChHHHHHHHH
Confidence 35555542223799999999999999999987
No 374
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.0013 Score=67.70 Aligned_cols=63 Identities=22% Similarity=0.210 Sum_probs=54.4
Q ss_pred CCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 403 ~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..+.+++.++++.|..+. . .-..+++++++-..-.+..|+||+||||+++++.|+..|++|.+
T Consensus 359 ~~p~l~i~~V~f~y~p~~------------y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~ 421 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSE------------Y-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIV 421 (582)
T ss_pred CCCeeEEEeeeccCCCcc------------h-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCccccee
Confidence 357899999999996542 1 35788999999999999999999999999999999999999964
No 375
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.59 E-value=0.0017 Score=63.13 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=30.3
Q ss_pred eeeeeEEEEe-------CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 436 AIKGLWVNIA-------KDQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 436 AV~~lsl~v~-------~gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
.++++++.+. +|++++++|+||+||||++.+|++.+.
T Consensus 57 v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~ 100 (270)
T PRK06731 57 ILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFH 100 (270)
T ss_pred HhcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4666666665 569999999999999999999998653
No 376
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=96.55 E-value=0.79 Score=44.02 Aligned_cols=138 Identities=15% Similarity=0.177 Sum_probs=84.9
Q ss_pred HHHHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHHHH
Q 011717 135 SSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAF 214 (479)
Q Consensus 135 ~~iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~g~s~i~~~~ 214 (479)
..++.|||++.-+.++.+-++...+-++..+...+..++..+++++++..+.... ...+....+..+++..+....+++
T Consensus 80 ~~~~~~r~~g~~~~l~~~p~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~g~~~-~~~~~l~~~~~~~l~~~~~~~lgl 158 (253)
T TIGR03861 80 LSMVYDREMGSMRVLLTSPLPRPFLLFCKLLASALISLLQVYAFLAIAALVGVQP-PVWGYVSVLPALVLVAFMLGALGL 158 (253)
T ss_pred hHhHHhHhcCHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999989999999999999999999988888887655554444443221 111233333444556677778899
Q ss_pred HHHHhcCCchhhhHHH-HHHHHHHHHHHHHHhhccccC--cccchhhhhhheecChHHHHHHHHHH
Q 011717 215 MFSAFISKSSSSTTIG-FSVFIVGFLTQLVTAFGFPYS--DQFSNTYRTIWSLFPPNLLAEALQLL 277 (479)
Q Consensus 215 ~~S~fF~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~P~~~~~~~~~~i 277 (479)
++|.+.++.+.+..+. .+.....++..++ ++.+ ++.+..++++..+.|......++...
T Consensus 159 ~la~l~~~~~~~~~i~~~~~~~l~flSgi~----~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~ 220 (253)
T TIGR03861 159 ALSNLIRQLENFAGVMNFVIFPMFFLSSAL----YPLWKMQEASTWLYWICALNPFTHAVELVRFA 220 (253)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHhhHh----hhhhhcccccHHHHHHHHhCcHHHHHHHHHHH
Confidence 9999987765544322 2222111111111 1111 12244566677788988777776654
No 377
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.48 E-value=0.14 Score=48.99 Aligned_cols=99 Identities=15% Similarity=0.077 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHH---HHHhhcccccccCch---HHHHHHHHHHH
Q 011717 133 QISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI---FGMMFQFDFFLNNSF---AVLFLLFFLFE 206 (479)
Q Consensus 133 ~v~~iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii---~~~~~~~~~f~~~~~---~~l~ll~~l~g 206 (479)
....+.+|||+|--|.+....++...+.++-++-..+..++..+..++ ....+.... .+-+. ....+..++++
T Consensus 69 ~~~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~ 147 (240)
T TIGR03518 69 TMRSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPV-GNLDIGSTFGSYIGLLLLG 147 (240)
T ss_pred HHHHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-ccccHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999998876655544322111 111121111 11122 22344456788
Q ss_pred HHHHHHHHHHHHhcCCchhhhHHHHH
Q 011717 207 LNMTGFAFMFSAFISKSSSSTTIGFS 232 (479)
Q Consensus 207 ~s~i~~~~~~S~fF~~~~~a~~~~~~ 232 (479)
.+.+..+.++|++.++...|...++.
T Consensus 148 ~~~~aig~~iSsl~~~q~~a~~~~~~ 173 (240)
T TIGR03518 148 SVYTAIGLFASSLTENQIVAFIIAVF 173 (240)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 88999999999997766666544443
No 378
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=96.39 E-value=0.0024 Score=64.45 Aligned_cols=33 Identities=33% Similarity=0.514 Sum_probs=30.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
.+||+.||+|-||-||||.+++|+|-.+|.-|.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~ 130 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 130 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCC
Confidence 479999999999999999999999999998774
No 379
>PRK15494 era GTPase Era; Provisional
Probab=96.36 E-value=0.003 Score=63.79 Aligned_cols=37 Identities=19% Similarity=0.383 Sum_probs=34.4
Q ss_pred ceeeeeEEEEeCCc-------EEEEECCCCCcHHHHHHHHhCCC
Q 011717 435 HAIKGLWVNIAKDQ-------LFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 435 ~AV~~lsl~v~~ge-------i~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.+.+.+++.++.|+ .++++|+.|+||||+++.|+|..
T Consensus 33 ~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 33 GSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred ccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 48999999999999 99999999999999999999953
No 380
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.31 E-value=0.0025 Score=64.59 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=26.8
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVT 474 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~pT 474 (479)
++|..+.+.|+||+|||||++.|.+.+.++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~ 161 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEA 161 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 588999999999999999999999987543
No 381
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.29 E-value=0.00092 Score=64.96 Aligned_cols=39 Identities=28% Similarity=0.292 Sum_probs=33.6
Q ss_pred ceeeeeEEEEeCCc-EEEEECCCCCcHHHHHHHHhCCCCC
Q 011717 435 HAIKGLWVNIAKDQ-LFCLLGPNGAGKTTTISCLTGITPV 473 (479)
Q Consensus 435 ~AV~~lsl~v~~ge-i~~LLG~NGAGKTTt~~mLtG~~~p 473 (479)
.|++.+...+.+++ +..|.|+||+||||+++-+...+++
T Consensus 30 ~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~ 69 (269)
T TIGR03015 30 RAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 47888888887766 8999999999999999999987764
No 382
>PLN03211 ABC transporter G-25; Provisional
Probab=96.29 E-value=0.59 Score=51.59 Aligned_cols=95 Identities=14% Similarity=0.218 Sum_probs=66.0
Q ss_pred HHHHHHHHHhHHHHHHHhCc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--CchHHHHHHHHHHHHHHHH
Q 011717 135 SSLVTEKELKLRQVMTMMGL-YDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLN--NSFAVLFLLFFLFELNMTG 211 (479)
Q Consensus 135 ~~iV~EKe~klke~m~~mGl-~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~--~~~~~l~ll~~l~g~s~i~ 211 (479)
.....||.-=.||. .+|. +..+|++|..+.++...++.+++..++.+.. ..+.. ..+...++.+++..++..+
T Consensus 459 ~~f~~er~v~~rE~--~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m--~Gl~~~~~~F~~f~li~~l~~~~~~s 534 (659)
T PLN03211 459 FVFPQERAIFVKER--ASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWM--AGLKPELGAFLLTLLVLLGYVLVSQG 534 (659)
T ss_pred HHHHHhhHHHHHhh--hCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEc--CCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 33567888777776 5565 6799999999999888777766554433221 11111 2344445567788889999
Q ss_pred HHHHHHHhcCCchhhhHHHHHH
Q 011717 212 FAFMFSAFISKSSSSTTIGFSV 233 (479)
Q Consensus 212 ~~~~~S~fF~~~~~a~~~~~~~ 233 (479)
+++++++++.+...|..++.++
T Consensus 535 ~g~~i~a~~~~~~~a~~~~~~~ 556 (659)
T PLN03211 535 LGLALGAAIMDAKKASTIVTVT 556 (659)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999888887665443
No 383
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.28 E-value=0.0036 Score=54.01 Aligned_cols=29 Identities=31% Similarity=0.261 Sum_probs=25.4
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 444 IAKDQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 444 v~~gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
+++|+++.|.|..||||||+.+.+...+.
T Consensus 19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36789999999999999999999987654
No 384
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.27 E-value=0.0028 Score=62.28 Aligned_cols=29 Identities=34% Similarity=0.575 Sum_probs=25.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLTGITPV 473 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~p 473 (479)
.+|++++++||+|+|||||+..|++.+..
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999876543
No 385
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.07 E-value=0.004 Score=65.45 Aligned_cols=28 Identities=43% Similarity=0.667 Sum_probs=25.1
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 444 IAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 444 v~~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
+++|++++|+|++|+|||||+..|++.+
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999998743
No 386
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.04 E-value=0.0052 Score=59.05 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=25.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
+++.+++|++|+||||++|.|.|......|+
T Consensus 120 ~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~ 150 (245)
T TIGR00157 120 NRISVFAGQSGVGKSSLINALDPSVKQQVND 150 (245)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhhhccccc
Confidence 4799999999999999999999976554443
No 387
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=96.01 E-value=1.2 Score=42.61 Aligned_cols=136 Identities=18% Similarity=0.246 Sum_probs=73.1
Q ss_pred HHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHHHHH
Q 011717 137 LVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLS-SLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFM 215 (479)
Q Consensus 137 iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~-~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~g~s~i~~~~~ 215 (479)
+..||+.+..+.+..+.++...+.++..+...+...+. .+++++...+++ .-...+...+.....++.+..+.++.+
T Consensus 111 ~~~~~~~g~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~lg~~ 188 (286)
T COG0842 111 LFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLG--VPFLGSLLLLLLLLLLLLLATVALGLL 188 (286)
T ss_pred HHhHHhhCcHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 44579999999999999997666666666555554444 333334444444 112334555566666677777777776
Q ss_pred HHH-hcCCchhhhHHHHHH-HHHHHHHHHHHhhccccCcccchhhhhhheecChHHHHHHHHHHHH
Q 011717 216 FSA-FISKSSSSTTIGFSV-FIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSD 279 (479)
Q Consensus 216 ~S~-fF~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i~~ 279 (479)
++. ..++.+.+...+..+ ....++.. ..+|. ...+...+.+..+.|......++.....
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g----~~~p~-~~~p~~~~~i~~~~P~t~~~~~~~~~~~ 249 (286)
T COG0842 189 LSTFAKSQLQCASAVGNLLILPLGFLSG----VFFPL-ELLPAWLQGISYINPLTYAIDALRYVYL 249 (286)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcc----ccCch-hhhHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 662 334344443333222 21211111 11121 1223345566667787555555554443
No 388
>PLN02165 adenylate isopentenyltransferase
Probab=95.99 E-value=0.0054 Score=61.02 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=24.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
+|++++|+|+|||||||+...|++.+.
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 467999999999999999999999865
No 389
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.98 E-value=0.005 Score=65.38 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=24.4
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~~pTsG 476 (479)
-++|+.|+|||||||+.++|.|.. |..|
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p~vg 93 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIA 93 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCcE
Confidence 489999999999999999999987 3444
No 390
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.95 E-value=0.0051 Score=62.40 Aligned_cols=26 Identities=38% Similarity=0.553 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
++.+++|+|+||+|||||+..|++.+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 35799999999999999999998754
No 391
>PRK09183 transposase/IS protein; Provisional
Probab=95.95 E-value=0.0023 Score=62.01 Aligned_cols=35 Identities=31% Similarity=0.498 Sum_probs=31.2
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
..+.++++ +++|+.+.|+|++|+|||++...|.+.
T Consensus 91 ~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 91 QSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred HHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 46778888 999999999999999999999999654
No 392
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.93 E-value=0.0034 Score=67.98 Aligned_cols=39 Identities=28% Similarity=0.431 Sum_probs=34.9
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV 473 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p 473 (479)
.++++.++...+|+++.|.||+|+||||++++|+|.+.+
T Consensus 98 ~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~ 136 (637)
T TIGR00602 98 TWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI 136 (637)
T ss_pred HHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 367888889999999999999999999999999997653
No 393
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=95.92 E-value=0.4 Score=52.53 Aligned_cols=95 Identities=22% Similarity=0.257 Sum_probs=62.9
Q ss_pred HHHHHHHHHhHHHHHHHhCc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--CchHHHHHHHHHHHHHHHH
Q 011717 135 SSLVTEKELKLRQVMTMMGL-YDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLN--NSFAVLFLLFFLFELNMTG 211 (479)
Q Consensus 135 ~~iV~EKe~klke~m~~mGl-~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~--~~~~~l~ll~~l~g~s~i~ 211 (479)
..+..||..=.||. ..|+ +..+|++|..+.++...++..++..++.+.. ..+.. ..+...++++++..++...
T Consensus 413 ~~f~~er~v~~rE~--~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~--~gl~~~~~~f~~f~l~~~l~~~~~~s 488 (617)
T TIGR00955 413 NVFTAELPVFLRET--RSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWM--IGLRSGATHFLTFLFLVTLVANVATS 488 (617)
T ss_pred HHHHHHHHHHHHhh--cCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhee--ccCCccHHHHHHHHHHHHHHHHHHHH
Confidence 34567887766665 5577 6689999999999888777665554433221 11111 1233333445566777888
Q ss_pred HHHHHHHhcCCchhhhHHHHHH
Q 011717 212 FAFMFSAFISKSSSSTTIGFSV 233 (479)
Q Consensus 212 ~~~~~S~fF~~~~~a~~~~~~~ 233 (479)
+++++++++.+...|..++.++
T Consensus 489 ~~~~i~~~~~~~~~a~~~~~~~ 510 (617)
T TIGR00955 489 FGYLISCAFSSTSMALTVGPPF 510 (617)
T ss_pred HHHHHHHhcCchHHHHHHHHHH
Confidence 9999999999988887665444
No 394
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.91 E-value=0.0064 Score=61.47 Aligned_cols=31 Identities=29% Similarity=0.451 Sum_probs=26.9
Q ss_pred EEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 441 sl~v~~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
++.+.+|+++++.||+|+|||||+.-|+...
T Consensus 200 ~~~~~~~~ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 200 SFDLSNHRIISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred CceecCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567889999999999999999999988643
No 395
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.87 E-value=0.0056 Score=63.61 Aligned_cols=29 Identities=34% Similarity=0.599 Sum_probs=25.3
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 444 IAKDQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 444 v~~gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
+.+|++++++||||+|||||+..|++.+.
T Consensus 218 ~~~~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 218 LKQGGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999987543
No 396
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=95.85 E-value=0.011 Score=62.64 Aligned_cols=44 Identities=23% Similarity=0.459 Sum_probs=39.4
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh---CCCCCCCcccC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT---GITPVTGGDGC 479 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt---G~~~pTsG~a~ 479 (479)
.=+||+.+.. +|.+.++-|++|+||||+-+.|+ |..-.++|..|
T Consensus 273 RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~Y 319 (512)
T PRK13477 273 RLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMY 319 (512)
T ss_pred EEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCcee
Confidence 4699999977 89999999999999999999999 88888888765
No 397
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=95.69 E-value=1.1 Score=43.26 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHH---HHHHHHHHHHHhh---cccccccCchHHHHHHHHHHHH
Q 011717 134 ISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVL---LSSLFIVIFGMMF---QFDFFLNNSFAVLFLLFFLFEL 207 (479)
Q Consensus 134 v~~iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~---i~~~~~ii~~~~~---~~~~f~~~~~~~l~ll~~l~g~ 207 (479)
...+..|||+|-=+.+....++..-+.++-++...+..+ +...+..++.... ........+.....+...+..+
T Consensus 87 ~~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (277)
T PF12679_consen 87 SDLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLL 166 (277)
T ss_pred HHHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence 445779999999999999999999999998887766532 2211111111111 0001111112221222222222
Q ss_pred ---HHHHHHHHHHHhcCCchhhhHHHHHHHHH
Q 011717 208 ---NMTGFAFMFSAFISKSSSSTTIGFSVFIV 236 (479)
Q Consensus 208 ---s~i~~~~~~S~fF~~~~~a~~~~~~~~~~ 236 (479)
...+.++++|.++++++.|..++..+++.
T Consensus 167 ~~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~ 198 (277)
T PF12679_consen 167 AVLVFISLGLLISSLFRSSASAILASLGLLFL 198 (277)
T ss_pred HHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence 44788999999999888887766555443
No 398
>PRK14974 cell division protein FtsY; Provisional
Probab=95.66 E-value=0.0054 Score=61.55 Aligned_cols=28 Identities=39% Similarity=0.469 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGITPV 473 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~~~p 473 (479)
++.+++++|+||+|||||+..|+..+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~ 166 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK 166 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999876543
No 399
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.57 E-value=0.0076 Score=61.51 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=24.8
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGITPVT 474 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~~pT 474 (479)
=++|+.|++|+||||+.+.|.|++.++
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~~~ 239 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFRVT 239 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 488999999999999999999988776
No 400
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.57 E-value=0.006 Score=59.54 Aligned_cols=30 Identities=37% Similarity=0.440 Sum_probs=25.2
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPV 473 (479)
Q Consensus 444 v~~gei~~LLG~NGAGKTTt~~mLtG~~~p 473 (479)
-.++.+++++|++|+|||||..-|+..+..
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~ 98 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKK 98 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 345689999999999999999999876543
No 401
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.57 E-value=0.013 Score=52.17 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.5
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
-.++++|.+|+||||++|.|.|...
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~ 127 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKV 127 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCc
Confidence 3567999999999999999999544
No 402
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.55 E-value=0.012 Score=54.64 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.++++|++|+||||+++.|+|..
T Consensus 43 ~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 43 TVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred eEEEECCCCCCHHHHHHHHhcch
Confidence 67899999999999999999964
No 403
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.55 E-value=0.015 Score=58.88 Aligned_cols=35 Identities=29% Similarity=0.454 Sum_probs=31.9
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
.-..|-||.|-.|.-.||+||||-||||+++-|..
T Consensus 278 ~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~ 312 (807)
T KOG0066|consen 278 LLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAA 312 (807)
T ss_pred eeeeccceEEEecceecccCCCCCchHHHHHHHHh
Confidence 35778899999999999999999999999998865
No 404
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.55 E-value=0.0092 Score=60.36 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=27.8
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCCCC-CCcc
Q 011717 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPV-TGGD 477 (479)
Q Consensus 444 v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-TsG~ 477 (479)
..++..+.+.|++|+|||||++.|.+..++ ..|.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~ 153 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGH 153 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCE
Confidence 456889999999999999999999986653 3443
No 405
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.48 E-value=0.011 Score=59.55 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=30.2
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 443 ~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
.+..+..+.+.|+.||||||+++.|.+.+++..+.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~ri 192 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERL 192 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCE
Confidence 35567789999999999999999999999887653
No 406
>PRK09866 hypothetical protein; Provisional
Probab=95.48 E-value=0.012 Score=62.89 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=23.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC-CCCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGI-TPVTG 475 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~-~~pTs 475 (479)
+.+++|++||||||++|.|+|. .-||+
T Consensus 71 ~valvG~sgaGKSTLiNaL~G~~Vlpt~ 98 (741)
T PRK09866 71 VLAIVGTMKAGKSTTINAIVGTEVLPNR 98 (741)
T ss_pred EEEEECCCCCCHHHHHHHHhCCccccCC
Confidence 6789999999999999999994 55553
No 407
>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=95.43 E-value=1.1 Score=46.40 Aligned_cols=100 Identities=15% Similarity=0.054 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhcccc-------cccCchH--HHHH
Q 011717 132 FQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFG--MMFQFDF-------FLNNSFA--VLFL 200 (479)
Q Consensus 132 ~~v~~iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~--~~~~~~~-------f~~~~~~--~l~l 200 (479)
....+++.|||+|.-|.+..+.++..-+-.+=.+--.++.++...++.+.+ ..+.... +...... ...+
T Consensus 205 ~~~~sva~EKe~rtlE~LLssPvSr~~ii~gKil~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 284 (407)
T COG1668 205 MVADSVAGEKERRTLEVLLSSPVSRSEIVFGKILGAALVGLTQIALWLLALTIATFLSLAVALAGTGLALLPAYLLLFAL 284 (407)
T ss_pred HHHHHHHHHhhhchhhhhhccCcChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHHH
Confidence 445678999999999999999999988877777766665555544444433 0110000 0011111 1111
Q ss_pred HHHHHH-HHHHHHHHHHHHhcCCchhhhHHHH
Q 011717 201 LFFLFE-LNMTGFAFMFSAFISKSSSSTTIGF 231 (479)
Q Consensus 201 l~~l~g-~s~i~~~~~~S~fF~~~~~a~~~~~ 231 (479)
.+++-+ +.....+.+++.++++.+.|+....
T Consensus 285 ~~~l~~~l~~~~l~a~l~~~a~~~k~aq~~~~ 316 (407)
T COG1668 285 SLFLLGLLLYAALAAFLGAMAGSIKEAQTLIS 316 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 122222 3444466778888888888876544
No 408
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.20 E-value=0.0074 Score=60.51 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=30.1
Q ss_pred eeEEEEeC--CcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717 439 GLWVNIAK--DQLFCLLGPNGAGKTTTISCLTGITPV 473 (479)
Q Consensus 439 ~lsl~v~~--gei~~LLG~NGAGKTTt~~mLtG~~~p 473 (479)
+++..+++ ++.++++|.+|+||||+++.|.+.+.+
T Consensus 152 ~i~~~~~~~~~~~~~~~G~~~~gkstl~~~l~~~~~~ 188 (325)
T TIGR01526 152 HIPREVRPFFVKTVAILGGESTGKSTLVNKLAAVFNT 188 (325)
T ss_pred hCCHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 46677777 899999999999999999999987543
No 409
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=95.20 E-value=1.7 Score=40.31 Aligned_cols=128 Identities=12% Similarity=0.155 Sum_probs=75.1
Q ss_pred HHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccccCchHHHHHHHHHHHHHHHHHHHH
Q 011717 137 LVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMM-FQFDFFLNNSFAVLFLLFFLFELNMTGFAFM 215 (479)
Q Consensus 137 iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~-~~~~~f~~~~~~~l~ll~~l~g~s~i~~~~~ 215 (479)
+..+||.|. +....+.+.++++..+...+..++.++++.++... ++.+ ..++..+++..++.+++...++.+
T Consensus 44 ~~~~~~~~~----~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~---~~~~~~~~l~~~l~~~~~~~lg~~ 116 (208)
T TIGR03062 44 IIPPLSRRA----LPKSARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLD---PAHPPATFGFAILTSLTFMAIIQF 116 (208)
T ss_pred Hhccccccc----cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 445666554 35678888889999998887777776655544322 3332 124556666778888999999999
Q ss_pred HHHhcCCchhhhHHHHHHHHHHHHHHHHHhhccccCcccchhhhhhheecChHHHHHHHHHH
Q 011717 216 FSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLL 277 (479)
Q Consensus 216 ~S~fF~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i 277 (479)
++.++++...+. ...+.+..+ ......+|. +..+..++++..+.|......++...
T Consensus 117 l~~~~~~~~~~~--~~~~~~~~~---~~sG~~~P~-~~~P~~~~~i~~~~P~t~~~~~~r~~ 172 (208)
T TIGR03062 117 LVALFGNVGRFL--ALVLLVLQL---GSSGGTFPI-ELLPAFFQAIHPFLPMTYSVNGLRQL 172 (208)
T ss_pred HHHHhCcchHHH--HHHHHHHHH---ccCCCccch-hhCHHHHHHhhhhCcHHHHHHHHHHH
Confidence 999998654322 211111100 000001221 23455667777788876555555443
No 410
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=95.20 E-value=0.015 Score=58.67 Aligned_cols=35 Identities=29% Similarity=0.344 Sum_probs=31.1
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 444 v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+..+.-+.+.|++|+||||+++.|.++.+|..|.+
T Consensus 175 v~~~~~ili~G~tGsGKTTll~al~~~i~~~~riv 209 (340)
T TIGR03819 175 VAARLAFLISGGTGSGKTTLLSALLALVAPDERIV 209 (340)
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHccCCCCCcEE
Confidence 45678999999999999999999999999988743
No 411
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=95.14 E-value=0.015 Score=67.33 Aligned_cols=38 Identities=32% Similarity=0.461 Sum_probs=29.0
Q ss_pred eeeeEEE-EeCCcEEEEECCCCCcHHHHHHHHhC-CCCCC
Q 011717 437 IKGLWVN-IAKDQLFCLLGPNGAGKTTTISCLTG-ITPVT 474 (479)
Q Consensus 437 V~~lsl~-v~~gei~~LLG~NGAGKTTt~~mLtG-~~~pT 474 (479)
.=|++.. +..+.+|++.|+|||||||++..|+. ++.-|
T Consensus 19 ~idf~~~~l~~~~l~~I~G~tGaGKStildai~~aLyg~~ 58 (1047)
T PRK10246 19 KIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHET 58 (1047)
T ss_pred eEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 3445543 55678999999999999999999995 44433
No 412
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.06 E-value=0.023 Score=65.03 Aligned_cols=41 Identities=29% Similarity=0.416 Sum_probs=37.4
Q ss_pred CcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717 433 PYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV 473 (479)
Q Consensus 433 ~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p 473 (479)
.+.-++|+|.-+++||.+-+|||-||||||+++.|+|-+.-
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~ 167 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDN 167 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcc
Confidence 34689999999999999999999999999999999996543
No 413
>PRK12288 GTPase RsgA; Reviewed
Probab=94.80 E-value=0.019 Score=58.03 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=25.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
+++.+|+|+.|+||||++|.|.|......|+
T Consensus 205 ~ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~ 235 (347)
T PRK12288 205 GRISIFVGQSGVGKSSLINALLPEAEILVGD 235 (347)
T ss_pred hCCEEEECCCCCCHHHHHHHhccccceeecc
Confidence 4578999999999999999999976554443
No 414
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=94.74 E-value=0.032 Score=62.98 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=32.9
Q ss_pred eEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 440 LWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 440 lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++.+..+..++++|++|+||||+++.|.+......+++
T Consensus 439 ~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i 477 (800)
T PRK13898 439 FNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRM 477 (800)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeE
Confidence 467778889999999999999999999999776655543
No 415
>PRK12289 GTPase RsgA; Reviewed
Probab=94.73 E-value=0.028 Score=56.85 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=25.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717 447 DQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLtG~~~pTsG 476 (479)
+.+.+++|+.|+||||++|.|.|......|
T Consensus 172 ~ki~v~iG~SgVGKSSLIN~L~~~~~~~t~ 201 (352)
T PRK12289 172 NKITVVAGPSGVGKSSLINRLIPDVELRVG 201 (352)
T ss_pred cceEEEEeCCCCCHHHHHHHHcCccccccc
Confidence 467899999999999999999987655444
No 416
>PTZ00035 Rad51 protein; Provisional
Probab=94.68 E-value=0.02 Score=57.75 Aligned_cols=30 Identities=23% Similarity=0.214 Sum_probs=27.0
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 443 ~v~~gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
++++|+++.+.|++|+||||+...+++...
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~q 143 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQ 143 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhc
Confidence 799999999999999999999999876443
No 417
>COG1162 Predicted GTPases [General function prediction only]
Probab=94.48 E-value=0.027 Score=55.02 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=26.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG 476 (479)
-+|.+.+|+|+.|.||||++|-|.|....--|
T Consensus 162 l~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~ 193 (301)
T COG1162 162 LAGKITVLLGQSGVGKSTLINALLPELNQKTG 193 (301)
T ss_pred hcCCeEEEECCCCCcHHHHHHhhCchhhhhhh
Confidence 35779999999999999999999986544433
No 418
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.45 E-value=0.029 Score=56.96 Aligned_cols=33 Identities=36% Similarity=0.638 Sum_probs=26.6
Q ss_pred eeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 437 V~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.+++ .+.++-+++|+||.|+|||||+-=|+..+
T Consensus 195 ~~~~--~~~~~~vi~LVGPTGVGKTTTlAKLAar~ 227 (407)
T COG1419 195 IENL--IVEQKRVIALVGPTGVGKTTTLAKLAARY 227 (407)
T ss_pred cccc--ccccCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 4444 55779999999999999999998776543
No 419
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=94.32 E-value=0.038 Score=52.39 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=25.2
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 444 IAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 444 v~~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
..++++++++|++|+||||+++.|.+..
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~ 63 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNY 63 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5678999999999999999999998864
No 420
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.32 E-value=0.037 Score=41.88 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 011717 450 FCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.++.|+.|+||||+.+.|...+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999998764
No 421
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.11 E-value=0.042 Score=56.26 Aligned_cols=27 Identities=52% Similarity=0.806 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
++.++.++|+||+|||||+.=|+..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456999999999999999998876443
No 422
>PTZ00202 tuzin; Provisional
Probab=94.04 E-value=0.029 Score=57.60 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=28.8
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.++++++.+++ .+..|.|++|+||||+++.+.+..
T Consensus 276 ~VL~~~d~~~p--rivvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 276 QVLRRLDTAHP--RIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred HHHhccCCCCc--eEEEEECCCCCCHHHHHHHHHhcC
Confidence 36677777765 399999999999999999998754
No 423
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.03 E-value=0.037 Score=54.63 Aligned_cols=24 Identities=42% Similarity=0.541 Sum_probs=19.8
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
-++-++|.||+|||||+.=|+-.+
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l 163 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYL 163 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHH
Confidence 477899999999999998776433
No 424
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=93.97 E-value=0.027 Score=66.21 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=27.4
Q ss_pred eEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 440 LWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 440 lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
++++..+++++|+.|++|+||||+.+.+.+.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~ 230 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSR 230 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHH
Confidence 5677888999999999999999999999554
No 425
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.92 E-value=0.028 Score=56.29 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=21.8
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
-++|+.|++||||||+++.|...+.
T Consensus 57 ~~igi~G~~GaGKSTl~~~l~~~l~ 81 (332)
T PRK09435 57 LRIGITGVPGVGKSTFIEALGMHLI 81 (332)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999998876554
No 426
>PF12730 ABC2_membrane_4: ABC-2 family transporter protein
Probab=93.83 E-value=4.9 Score=36.65 Aligned_cols=96 Identities=18% Similarity=0.247 Sum_probs=56.1
Q ss_pred HHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHHH----HhhcccccccCc----hHHHHHHHHHHHHH
Q 011717 137 LVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFG----MMFQFDFFLNNS----FAVLFLLFFLFELN 208 (479)
Q Consensus 137 iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~----~~~~~~~f~~~~----~~~l~ll~~l~g~s 208 (479)
.-+|+++|.-+.+...+.+..-++.+-++.-.+..++..++..+.. .......+.... ....++..++....
T Consensus 70 ~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (232)
T PF12730_consen 70 FSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYLISYLLLFLLLSLF 149 (232)
T ss_pred HHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHHHHHH
Confidence 5699999998999999999999999998887776665544433222 222211111111 11222333344444
Q ss_pred HHHHHHHHHHhcCCchhhhHHHHHH
Q 011717 209 MTGFAFMFSAFISKSSSSTTIGFSV 233 (479)
Q Consensus 209 ~i~~~~~~S~fF~~~~~a~~~~~~~ 233 (479)
.... .+++.++++...+..++.+.
T Consensus 150 ~~~~-~~i~~~~~~~~~~i~~~~~~ 173 (232)
T PF12730_consen 150 ISLL-LFISSLFRNSIVAIIISILL 173 (232)
T ss_pred HHHH-HHHHHHHhhHHHHHHHHHHH
Confidence 5555 77788888755454444433
No 427
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.78 E-value=0.09 Score=51.12 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=32.2
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
..+|++.-++++|+++.+.|+.|+||||+...++-.
T Consensus 18 ~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 18 PVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred ceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 579999889999999999999999999988876554
No 428
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.64 E-value=0.058 Score=55.45 Aligned_cols=26 Identities=35% Similarity=0.638 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
++.+++++|++|+|||||..-|+...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999988643
No 429
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=0.053 Score=53.38 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHhCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
-++|.||.-|+||||++|||+|.
T Consensus 189 ~VIgvlG~QgsGKStllslLaan 211 (491)
T KOG4181|consen 189 TVIGVLGGQGSGKSTLLSLLAAN 211 (491)
T ss_pred eEEEeecCCCccHHHHHHHHhcc
Confidence 36899999999999999999997
No 430
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=93.41 E-value=0.038 Score=55.21 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=33.0
Q ss_pred eeee-eEEEEeCCcEEEEECCCCCcHHHHHHHHhC--CCCCCCc
Q 011717 436 AIKG-LWVNIAKDQLFCLLGPNGAGKTTTISCLTG--ITPVTGG 476 (479)
Q Consensus 436 AV~~-lsl~v~~gei~~LLG~NGAGKTTt~~mLtG--~~~pTsG 476 (479)
.+|. +.=++++|+++.+.|++|+||||+...++. ..+++.|
T Consensus 84 ~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~G 127 (316)
T TIGR02239 84 ELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQG 127 (316)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcC
Confidence 4565 344799999999999999999999999886 5555554
No 431
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.32 E-value=0.06 Score=59.32 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=18.4
Q ss_pred cEEEEECCCCCcHHHHHHHHh
Q 011717 448 QLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLt 468 (479)
-++.+.|+|||||||+++.+.
T Consensus 29 ~~~~i~G~Ng~GKttll~ai~ 49 (650)
T TIGR03185 29 PIILIGGLNGAGKTTLLDAIQ 49 (650)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 378899999999999999763
No 432
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=93.14 E-value=0.067 Score=58.39 Aligned_cols=33 Identities=27% Similarity=0.228 Sum_probs=27.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
...+-+.|.|+||+||||+.+++.++..+.+|+
T Consensus 173 ~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~ 205 (615)
T TIGR02903 173 PFPQHIILYGPPGVGKTTAARLALEEAKKLKHT 205 (615)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCC
Confidence 345679999999999999999999988765553
No 433
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=93.04 E-value=0.097 Score=50.42 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
.++|+|..|+||||++|.|.|...
T Consensus 33 ~IllvG~tGvGKSSliNaLlg~~~ 56 (249)
T cd01853 33 TILVLGKTGVGKSSTINSIFGERK 56 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 467999999999999999999653
No 434
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.77 E-value=0.098 Score=50.84 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=22.8
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
.++..+.+.|+.|+|||||++.+...++
T Consensus 78 ~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 78 KPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 4566899999999999999997755444
No 435
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=92.70 E-value=0.12 Score=50.71 Aligned_cols=33 Identities=39% Similarity=0.556 Sum_probs=27.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
+.|.-+-+||.||+||||+|+-|-|-..+-.|+
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e~~Kkgs 82 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSETVKKGS 82 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhcccccCCCC
Confidence 456667799999999999999999977766664
No 436
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=92.58 E-value=0.14 Score=45.26 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
++...+++|+.|+||||++|.|+|...
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~ 125 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLK 125 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccc
Confidence 457789999999999999999999653
No 437
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=92.54 E-value=0.2 Score=43.56 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGITPV 473 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~~p 473 (479)
..+++|..|+||||++|.|+|...+
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~ 109 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKV 109 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce
Confidence 7899999999999999999997653
No 438
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=92.49 E-value=0.1 Score=44.46 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
.+..+.+.|+.|.||||+.+.+.....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 556888999999999999999988653
No 439
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.22 E-value=0.076 Score=55.75 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=33.2
Q ss_pred eeeeeE-EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 436 AIKGLW-VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 436 AV~~ls-l~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
-+|.+- =++.+|+++.+.|.+|+||||++..+++......|.
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~k 124 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMK 124 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCc
Confidence 355542 379999999999999999999999988766554443
No 440
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=92.09 E-value=0.11 Score=44.13 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=21.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
++|+++.|-|.=||||||..+-|.-
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~ 37 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLAR 37 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999998764
No 441
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.01 E-value=0.13 Score=57.72 Aligned_cols=30 Identities=30% Similarity=0.517 Sum_probs=23.7
Q ss_pred eeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 438 ~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
+|++++ ..+.+..|.|||++||||+++.+.
T Consensus 319 ndi~l~-~~~~~~iITGpN~gGKTt~lktig 348 (782)
T PRK00409 319 KDISLG-FDKTVLVITGPNTGGKTVTLKTLG 348 (782)
T ss_pred ceeEEC-CCceEEEEECCCCCCcHHHHHHHH
Confidence 344443 345789999999999999999885
No 442
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.96 E-value=0.18 Score=51.25 Aligned_cols=37 Identities=30% Similarity=0.454 Sum_probs=32.5
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
.|+|++ |++-+||-.|+-.-.|-||||++.||+.-..
T Consensus 152 RaIDgl-lT~G~GQRiGIFAgsGVGKStLLgMiar~t~ 188 (441)
T COG1157 152 RAIDGL-LTCGKGQRIGIFAGSGVGKSTLLGMIARNTE 188 (441)
T ss_pred eeeecc-cccccCceeEEEecCCCcHHHHHHHHhcccc
Confidence 467766 7999999999999999999999999997544
No 443
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=91.83 E-value=0.17 Score=53.56 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=21.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
++.++.+.|++|+|||||+..+...+.
T Consensus 241 ~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 241 PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 445899999999999999995555444
No 444
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=91.80 E-value=0.19 Score=47.96 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=25.3
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
.=+++.++-....+..|-|||.+||||.++.+.
T Consensus 32 v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~ 64 (235)
T PF00488_consen 32 VPNDIELSNNKSRIIIITGPNMSGKSTFLKQIG 64 (235)
T ss_dssp --EEEEESSSSSSEEEEESSTTSSHHHHHHHHH
T ss_pred ecceeecCCCceeEEEEeCCCccchhhHHHHHH
Confidence 346666655555699999999999999999874
No 445
>COG3910 Predicted ATPase [General function prediction only]
Probab=91.71 E-value=0.15 Score=46.30 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=19.1
Q ss_pred cEEEEECCCCCcHHHHHHHHh
Q 011717 448 QLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLt 468 (479)
-|+.+.|-||.||||++.-|.
T Consensus 38 pIT~i~GENGsGKSTLLEaiA 58 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIA 58 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHH
Confidence 589999999999999998775
No 446
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=91.68 E-value=0.13 Score=54.89 Aligned_cols=26 Identities=38% Similarity=0.623 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 447 DQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
+++..|-||.|+|||||+++|+-.+.
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999987643
No 447
>PF13245 AAA_19: Part of AAA domain
Probab=91.57 E-value=0.16 Score=39.20 Aligned_cols=22 Identities=45% Similarity=0.798 Sum_probs=17.0
Q ss_pred CCcEEEEECCCCCcHHHHH-HHH
Q 011717 446 KDQLFCLLGPNGAGKTTTI-SCL 467 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~-~mL 467 (479)
++.++.+.|+-|+|||||+ +.+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i 31 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARI 31 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHH
Confidence 4678888999999999554 443
No 448
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.56 E-value=0.15 Score=52.90 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHhC
Q 011717 447 DQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLtG 469 (479)
..++++.|++|+|||||..-|+-
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999874
No 449
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=91.50 E-value=0.15 Score=51.50 Aligned_cols=26 Identities=38% Similarity=0.740 Sum_probs=22.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 447 DQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
.++++|.||.|+||||+-+.|...+.
T Consensus 78 r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 78 KQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 47899999999999999999987543
No 450
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=91.44 E-value=0.097 Score=53.44 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=30.0
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 443 ~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
++.+|+++.+-|++|+||||++..+++......|.
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~ 112 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGK 112 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCe
Confidence 69999999999999999999999988766554444
No 451
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=91.39 E-value=0.12 Score=51.23 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=25.0
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPV 473 (479)
Q Consensus 444 v~~gei~~LLG~NGAGKTTt~~mLtG~~~p 473 (479)
+..+.-+.+-|+.|+||||+++-|.+.++.
T Consensus 129 v~~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 129 VLARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred HHcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 345567789999999999999999998754
No 452
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=91.21 E-value=0.19 Score=50.10 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=23.9
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 444 IAKDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 444 v~~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
+.++.+++|.|.+||||||.-++|...
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~ 156 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAAR 156 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 567889999999999999999999743
No 453
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.14 E-value=0.16 Score=50.81 Aligned_cols=28 Identities=21% Similarity=0.428 Sum_probs=25.0
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 443 NIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 443 ~v~~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.+..+..+.+.|+.|+||||+++.|.+.
T Consensus 144 ~v~~~~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 144 AVRAHRNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred HHHcCCeEEEECCCCCCHHHHHHHHHHh
Confidence 4567889999999999999999999986
No 454
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=91.07 E-value=0.14 Score=57.39 Aligned_cols=29 Identities=34% Similarity=0.621 Sum_probs=26.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGITPVT 474 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~~~pT 474 (479)
+|++++|+||.|.||||+.+.+++.+...
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~ 376 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRK 376 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 78999999999999999999999876544
No 455
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=90.40 E-value=0.22 Score=51.36 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
..++++|+.|+||||+.+.|.-.+
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998653
No 456
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=90.31 E-value=0.29 Score=55.17 Aligned_cols=24 Identities=29% Similarity=0.593 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
-+.++|++||||||++++|.++..
T Consensus 428 ~~~I~G~tGsGKS~l~~~l~~~~~ 451 (789)
T PRK13853 428 MTAIFGPIGRGKTTLMTFILAMLE 451 (789)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 588999999999999999987643
No 457
>PRK12608 transcription termination factor Rho; Provisional
Probab=90.19 E-value=0.27 Score=49.86 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=28.0
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
|+|.+ +.+-+||-.++.|+-|+||||++++|.-.
T Consensus 123 vID~l-~PiGkGQR~LIvG~pGtGKTTLl~~la~~ 156 (380)
T PRK12608 123 VVDLV-APIGKGQRGLIVAPPRAGKTVLLQQIAAA 156 (380)
T ss_pred hhhhe-eecCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44444 46789999999999999999999987653
No 458
>PLN02200 adenylate kinase family protein
Probab=90.11 E-value=0.2 Score=47.77 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=26.7
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHh---CCCCCCCcc
Q 011717 444 IAKDQLFCLLGPNGAGKTTTISCLT---GITPVTGGD 477 (479)
Q Consensus 444 v~~gei~~LLG~NGAGKTTt~~mLt---G~~~pTsG~ 477 (479)
..+.-++.++|+.|+||||.-+.|+ |..-.+.|+
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gd 76 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGD 76 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccH
Confidence 4445688999999999999988887 665555554
No 459
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=90.09 E-value=0.24 Score=54.36 Aligned_cols=30 Identities=33% Similarity=0.572 Sum_probs=28.6
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHH
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~ 465 (479)
=++|++.+++-|..+++-|..|+||||+++
T Consensus 616 NLkni~v~iPLg~~t~VTGVSGSGKSTLIn 645 (935)
T COG0178 616 NLKNIDVEIPLGVFTCVTGVSGSGKSTLIN 645 (935)
T ss_pred CcccceeecccccEEEEEecCCCCHHHhHH
Confidence 499999999999999999999999999994
No 460
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=89.83 E-value=0.25 Score=56.02 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=27.8
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
.=||+.++ ..+.+..|-|||++||||.++.++
T Consensus 597 vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~ 628 (854)
T PRK05399 597 VPNDCDLD-EERRLLLITGPNMAGKSTYMRQVA 628 (854)
T ss_pred EecceeeC-CCCcEEEEECCCCCCcHHHHHHHH
Confidence 45778888 778899999999999999999873
No 461
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.74 E-value=0.23 Score=52.13 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGITPV 473 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~~~p 473 (479)
++++.-|-||.|+|||||++.|+-.+-+
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg~ 136 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELGY 136 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhCc
Confidence 4678999999999999999999976544
No 462
>PRK15066 inner membrane transport permease; Provisional
Probab=89.62 E-value=20 Score=34.38 Aligned_cols=135 Identities=10% Similarity=0.144 Sum_probs=69.1
Q ss_pred HHHHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccccCchHHHHHHHHHHHHHHHHHH
Q 011717 135 SSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMM-FQFDFFLNNSFAVLFLLFFLFELNMTGFA 213 (479)
Q Consensus 135 ~~iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~-~~~~~f~~~~~~~l~ll~~l~g~s~i~~~ 213 (479)
..++.||+.|.-+-+.++-++...+-++..+...+..++..+++++++.. ++... .+....+..+++........+
T Consensus 82 ~~i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~---~~~~~~l~~~ll~~~~f~~~g 158 (257)
T PRK15066 82 SSFFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQV---HHWGIVLLTVLLTAILFSLGG 158 (257)
T ss_pred HHHHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH---hHHHHHHHHHHHHHHHHHHHH
Confidence 34678888777777778889998888888887766655544333333222 22211 122222222222222233346
Q ss_pred HHHHHhcCCchhhhH-HHHHHHHHHHHHHHHHhhccccCcccchhhhhhheecChHHHHHHHHHH
Q 011717 214 FMFSAFISKSSSSTT-IGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLL 277 (479)
Q Consensus 214 ~~~S~fF~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i 277 (479)
+++|..-.+.+.... ...+.....++..+ .++. +..+..++.+..+.|-..+..++...
T Consensus 159 l~~a~~~~~~~~~~~i~~~~~~pl~flSgi----~~p~-~~lP~~l~~i~~~nPlt~~v~~~R~~ 218 (257)
T PRK15066 159 LINAVFAKSFDDISIIPTFVLTPLTYLGGV----FYSI-SLLPPFWQGVSKLNPIVYMVNAFRYG 218 (257)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHcch----hccH-HhChHHHHHHHHHCcHHHHHHHHHHH
Confidence 777766555444332 22222211111111 1121 12445567777788887776666654
No 463
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=89.42 E-value=0.16 Score=49.40 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=29.6
Q ss_pred eEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717 440 LWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT 474 (479)
Q Consensus 440 lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT 474 (479)
+...++.+..+.+-|+-|+||||+++.|...+++.
T Consensus 120 l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 120 LRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp HHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred HhhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence 33446678889999999999999999999888776
No 464
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=89.39 E-value=0.27 Score=49.46 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=26.0
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVT 474 (479)
Q Consensus 444 v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT 474 (479)
+..+--+.+-|+.|+||||+++-|.+..++.
T Consensus 157 v~~~~nili~G~tgSGKTTll~aL~~~ip~~ 187 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFTNAALREIPAI 187 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 3456678889999999999999999988764
No 465
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=89.07 E-value=0.38 Score=47.89 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=23.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGITPVTG 475 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~~pTs 475 (479)
-+-+-|-.|+|||||+|.|+|..+|+.
T Consensus 175 NILisGGTGSGKTTlLNal~~~i~~~e 201 (355)
T COG4962 175 NILISGGTGSGKTTLLNALSGFIDSDE 201 (355)
T ss_pred eEEEeCCCCCCHHHHHHHHHhcCCCcc
Confidence 455669999999999999999999886
No 466
>PRK10646 ADP-binding protein; Provisional
Probab=89.06 E-value=0.4 Score=42.42 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=22.6
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 444 IAKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 444 v~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
+++|.++.|-|.=||||||..+-|.-
T Consensus 25 l~~g~vi~L~GdLGaGKTtf~rgl~~ 50 (153)
T PRK10646 25 CDGATVIYLYGDLGAGKTTFSRGFLQ 50 (153)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999998854
No 467
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=89.00 E-value=0.3 Score=51.08 Aligned_cols=35 Identities=34% Similarity=0.290 Sum_probs=29.5
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
|+ |.=+.+-+||..|+.|..|.||||+++||+--.
T Consensus 133 ~I-D~l~pigkGQR~gIfa~~G~GKt~Ll~~~~~~~ 167 (461)
T PRK12597 133 VI-DLLCPIAKGGKTGLFGGAGVGKTVLMMELIFNI 167 (461)
T ss_pred ee-cccCccccCCEEEeecCCCCChhHHHHHHHHHH
Confidence 44 445789999999999999999999999987533
No 468
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.98 E-value=11 Score=41.22 Aligned_cols=95 Identities=21% Similarity=0.226 Sum_probs=60.2
Q ss_pred HHHHHHHhHHHHHHHhCc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHHHHH
Q 011717 137 LVTEKELKLRQVMTMMGL-YDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFM 215 (479)
Q Consensus 137 iV~EKe~klke~m~~mGl-~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~g~s~i~~~~~ 215 (479)
...||..=.||... |. +.++|.+|+.+.++...++..++.+.+.+....---....+....+..++..+....++.+
T Consensus 412 f~~e~~~f~rE~~~--~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~ 489 (613)
T KOG0061|consen 412 FPQERPIFLRETSS--GLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLF 489 (613)
T ss_pred hHHHHHHHHHHHhc--CchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554432 32 5689999999998888888776665544333211111123444445566777888899999
Q ss_pred HHHhcCCchhhhHHHHHH
Q 011717 216 FSAFISKSSSSTTIGFSV 233 (479)
Q Consensus 216 ~S~fF~~~~~a~~~~~~~ 233 (479)
++..+.+...|.+++..+
T Consensus 490 i~~~~~~~~~a~~~~~~~ 507 (613)
T KOG0061|consen 490 ISAIVPNLSLATSLGPVL 507 (613)
T ss_pred HHHhccchhheeehHHHH
Confidence 999999877776655443
No 469
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=88.83 E-value=21 Score=33.51 Aligned_cols=86 Identities=21% Similarity=0.304 Sum_probs=52.3
Q ss_pred HHHHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccccccCchHHHHHHHHHHHHHHHHHH
Q 011717 135 SSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIF-GMMFQFDFFLNNSFAVLFLLFFLFELNMTGFA 213 (479)
Q Consensus 135 ~~iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~-~~~~~~~~f~~~~~~~l~ll~~l~g~s~i~~~ 213 (479)
+...+|+|++.-|.+++.+.+..++|++-.+...+...+..++...+ ...++.+. .+...+.+.+++-+++....+
T Consensus 66 r~f~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~---~~~~~~~~~l~lgt~gl~~ig 142 (215)
T PF03379_consen 66 RSFAREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPI---SSWPLLLLSLLLGTLGLAAIG 142 (215)
T ss_pred HhHHHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHhHHHHHHH
Confidence 34679999999999999999999999999888877776665444332 23333221 223333333333334444444
Q ss_pred HHHHHhcCCc
Q 011717 214 FMFSAFISKS 223 (479)
Q Consensus 214 ~~~S~fF~~~ 223 (479)
=+.|.+-.+.
T Consensus 143 tl~aal~~~~ 152 (215)
T PF03379_consen 143 TLLAALAAGA 152 (215)
T ss_pred HHHHHHHHhc
Confidence 4444443333
No 470
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=88.82 E-value=0.42 Score=43.23 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.0
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
-..+++|.-++||||++|.|+|-..
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~~ 142 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSRA 142 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccc
Confidence 3578999999999999999999654
No 471
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=88.80 E-value=0.36 Score=48.99 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.++|+|..+|||||+++.|+|..
T Consensus 191 ~ValvG~~NvGKSSLln~L~~~~ 213 (351)
T TIGR03156 191 TVALVGYTNAGKSTLFNALTGAD 213 (351)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999999953
No 472
>PLN02772 guanylate kinase
Probab=88.80 E-value=0.43 Score=48.65 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=22.8
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGITPV 473 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~~p 473 (479)
.++.|.||.|+||+|+++.|....+.
T Consensus 136 k~iVlsGPSGvGKsTL~~~L~~~~p~ 161 (398)
T PLN02772 136 KPIVISGPSGVGKGTLISMLMKEFPS 161 (398)
T ss_pred cEEEEECCCCCCHHHHHHHHhhhccc
Confidence 58899999999999999999876644
No 473
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=88.74 E-value=0.29 Score=51.03 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=23.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLTGITPV 473 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~p 473 (479)
.++.-+.|.|++|.||||+.+.+++....
T Consensus 215 ~~p~gVLL~GPPGTGKT~LAraIA~el~~ 243 (438)
T PTZ00361 215 KPPKGVILYGPPGTGKTLLAKAVANETSA 243 (438)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 34455779999999999999999987543
No 474
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=88.68 E-value=0.41 Score=48.66 Aligned_cols=29 Identities=28% Similarity=0.550 Sum_probs=21.8
Q ss_pred EEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 450 FCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+|+.|..||||||++|-|-|+-.-+.|.|
T Consensus 38 IaV~G~sGsGKSSfINalrGl~~~d~~aA 66 (376)
T PF05049_consen 38 IAVTGESGSGKSSFINALRGLGHEDEGAA 66 (376)
T ss_dssp EEEEESTTSSHHHHHHHHTT--TTSTTS-
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCcCcC
Confidence 47889999999999999999755555543
No 475
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=88.67 E-value=0.37 Score=46.18 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=18.5
Q ss_pred cEEEEECCCCCcHHHHHHHHhC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG 469 (479)
-++|+-|+-||||||++.-|.-
T Consensus 30 ~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 30 HVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp EEEEEEE-TTSSHHHHHHHHHH
T ss_pred eEEEeeCCCCCcHHHHHHHHHH
Confidence 3789999999999999998764
No 476
>PRK10867 signal recognition particle protein; Provisional
Probab=88.36 E-value=0.43 Score=49.65 Aligned_cols=24 Identities=38% Similarity=0.511 Sum_probs=20.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCC
Q 011717 447 DQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
..++.+.|++|+|||||.--|+..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH
Confidence 468999999999999998777653
No 477
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=88.16 E-value=0.72 Score=47.49 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=26.5
Q ss_pred eeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 439 ~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
.+-|.++-=-=+||+|..+|||||++|.|++.-+
T Consensus 151 ~~~lelk~iadValVG~PNaGKSTLln~Lt~~k~ 184 (390)
T PRK12298 151 ELKLELKLLADVGLLGLPNAGKSTFIRAVSAAKP 184 (390)
T ss_pred EEEEeeeccccEEEEcCCCCCHHHHHHHHhCCcc
Confidence 4445444444599999999999999999998643
No 478
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=88.10 E-value=0.67 Score=40.81 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
...++|.+|+||||+++-|.|..
T Consensus 103 ~~~~ig~~~~Gkssl~~~l~~~~ 125 (156)
T cd01859 103 KVGVVGYPNVGKSSIINALKGRH 125 (156)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 44999999999999999999843
No 479
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=88.02 E-value=0.6 Score=41.97 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
-.++++|..|+||||+++.|+|..
T Consensus 116 ~~~~~~G~~~vGKstlin~l~~~~ 139 (171)
T cd01856 116 IRAMVVGIPNVGKSTLINRLRGKK 139 (171)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999844
No 480
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=88.01 E-value=0.43 Score=43.64 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
++..++++|..|+||||++|.|.+.
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~ 150 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKK 150 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHh
Confidence 5567889999999999999999984
No 481
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=87.98 E-value=0.49 Score=47.65 Aligned_cols=32 Identities=28% Similarity=0.267 Sum_probs=25.1
Q ss_pred eeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 439 ~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.+-|.++-=-=+||+|..+|||||+++.||+-
T Consensus 150 ~~~lelk~~adVglVG~PNaGKSTLln~ls~a 181 (335)
T PRK12299 150 WLRLELKLLADVGLVGLPNAGKSTLISAVSAA 181 (335)
T ss_pred EEEEEEcccCCEEEEcCCCCCHHHHHHHHHcC
Confidence 34444444445899999999999999999984
No 482
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=87.94 E-value=0.46 Score=48.49 Aligned_cols=31 Identities=29% Similarity=0.348 Sum_probs=27.1
Q ss_pred eeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 439 ~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
|+=+-+-+||--++.|+-|+||||+++.|.-
T Consensus 161 D~l~PIGkGQR~lIvgppGvGKTTLaK~Ian 191 (416)
T PRK09376 161 DLIAPIGKGQRGLIVAPPKAGKTVLLQNIAN 191 (416)
T ss_pred eeecccccCceEEEeCCCCCChhHHHHHHHH
Confidence 3446788999999999999999999998764
No 483
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=87.92 E-value=0.39 Score=50.05 Aligned_cols=33 Identities=36% Similarity=0.419 Sum_probs=28.4
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
|+| .=+.+-+||..++.|..|.||||++.|++-
T Consensus 133 aID-~l~pig~GQr~~If~~~G~GKt~L~~~~~~ 165 (461)
T TIGR01039 133 VID-LLAPYAKGGKIGLFGGAGVGKTVLIQELIN 165 (461)
T ss_pred eec-ccCCcccCCEEEeecCCCCChHHHHHHHHH
Confidence 444 447888999999999999999999999864
No 484
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=87.84 E-value=0.38 Score=52.76 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=25.4
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 443 NIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 443 ~v~~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
...++|+..+.|..||||||+.++|..-+
T Consensus 82 ~~~~~QsIiisGESGsGKTet~K~l~~yL 110 (653)
T cd01379 82 TYNQDQCIVISGESGSGKTESAHLLVQQL 110 (653)
T ss_pred hcCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 44678999999999999999999988754
No 485
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=87.51 E-value=0.4 Score=53.81 Aligned_cols=21 Identities=43% Similarity=0.668 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 011717 449 LFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG 469 (479)
-+.++|+.||||||++++|.-
T Consensus 438 hT~I~G~tGaGKTvLl~~lla 458 (796)
T COG3451 438 HTLIIGPTGAGKTVLLSFLLA 458 (796)
T ss_pred CeEEECCCCCCHHHHHHHHHH
Confidence 788999999999999999864
No 486
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=87.19 E-value=0.49 Score=49.59 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=22.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.+|--++++|+.|+||||+++.|+|.
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~ 226 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQ 226 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34556889999999999999999985
No 487
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=86.88 E-value=0.58 Score=47.00 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=27.3
Q ss_pred eeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 438 ~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
+.+.|.++-=-=++|+|..+|||||+++.|++-.
T Consensus 148 ~~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~ 181 (329)
T TIGR02729 148 RWLRLELKLLADVGLVGLPNAGKSTLISAVSAAK 181 (329)
T ss_pred EEEEEEeeccccEEEEcCCCCCHHHHHHHHhcCC
Confidence 4455666555568999999999999999999853
No 488
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=86.84 E-value=0.54 Score=46.51 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.+.++|.-|+|||||+|.|+|..
T Consensus 40 rIllvGktGVGKSSliNsIlG~~ 62 (313)
T TIGR00991 40 TILVMGKGGVGKSSTVNSIIGER 62 (313)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 35699999999999999999964
No 489
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.78 E-value=0.38 Score=53.49 Aligned_cols=17 Identities=35% Similarity=0.970 Sum_probs=15.5
Q ss_pred EECCCCCcHHHHHHHHh
Q 011717 452 LLGPNGAGKTTTISCLT 468 (479)
Q Consensus 452 LLG~NGAGKTTt~~mLt 468 (479)
++||||+||||...-|+
T Consensus 47 IiGpNGSGKSSiVcAIc 63 (1072)
T KOG0979|consen 47 IIGPNGSGKSSIVCAIC 63 (1072)
T ss_pred EECCCCCCchHHHHHHH
Confidence 78999999999998775
No 490
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=86.69 E-value=0.46 Score=48.50 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
++-.+.+-|+.|+|||||++.|.....
T Consensus 148 ~~GlilI~G~TGSGKTT~l~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344677899999999999999987653
No 491
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=86.68 E-value=0.48 Score=49.53 Aligned_cols=33 Identities=36% Similarity=0.419 Sum_probs=28.3
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
|+| .=+.+-+||..++.|..|.||||++.|++-
T Consensus 134 aID-~l~pigkGQR~gIfa~~GvGKt~Ll~~i~~ 166 (463)
T PRK09280 134 VID-LLAPYAKGGKIGLFGGAGVGKTVLIQELIN 166 (463)
T ss_pred eec-ccCCcccCCEEEeecCCCCChhHHHHHHHH
Confidence 444 457889999999999999999999999854
No 492
>PRK11058 GTPase HflX; Provisional
Probab=86.59 E-value=0.57 Score=48.82 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.++|+|..+|||||++|.|+|.
T Consensus 199 ~ValVG~~NaGKSSLlN~Lt~~ 220 (426)
T PRK11058 199 TVSLVGYTNAGKSTLFNRITEA 220 (426)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999994
No 493
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=86.57 E-value=0.85 Score=51.69 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=26.1
Q ss_pred eEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717 440 LWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV 473 (479)
Q Consensus 440 lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p 473 (479)
+++.+...--+.++|+.|+||||+++.|++....
T Consensus 449 ~n~h~~d~g~~~i~G~tGsGKS~l~~~l~~~~~~ 482 (818)
T PRK13830 449 LNLHVDDVGHTLIFGPTGSGKSTLLALIAAQFRR 482 (818)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 3444444347899999999999999999887554
No 494
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=86.51 E-value=0.43 Score=47.72 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.+.-+.+-|+-|+||||+++-|.+..
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34456799999999999999999876
No 495
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=86.31 E-value=0.5 Score=45.93 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=28.5
Q ss_pred eeeeEEEEeCCcEEEEECCCCCcHHHH-HHHHhCC
Q 011717 437 IKGLWVNIAKDQLFCLLGPNGAGKTTT-ISCLTGI 470 (479)
Q Consensus 437 V~~lsl~v~~gei~~LLG~NGAGKTTt-~~mLtG~ 470 (479)
+=|+-+.+-+||..++.|+-|+||||+ +.+|...
T Consensus 59 ~ID~l~pigrGQr~~Ifg~~g~GKt~L~l~~i~~~ 93 (274)
T cd01132 59 AIDAMIPIGRGQRELIIGDRQTGKTAIAIDTIINQ 93 (274)
T ss_pred EeeccCCcccCCEEEeeCCCCCCccHHHHHHHHHh
Confidence 444557899999999999999999999 7888643
No 496
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=86.23 E-value=0.55 Score=50.21 Aligned_cols=31 Identities=42% Similarity=0.650 Sum_probs=25.3
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
|+.+++ .+++|+.|+||-|+||||+-+.|..
T Consensus 95 Aa~gl~---~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 95 AAQGLE---EKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred HHHhcC---CCCceEEEecCCCCCchHHHHHHHH
Confidence 455553 3678999999999999999999874
No 497
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=86.16 E-value=0.15 Score=50.38 Aligned_cols=31 Identities=32% Similarity=0.457 Sum_probs=25.7
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHH
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~ 465 (479)
..+|.+==+-.+||.+.|-||.|+||||.++
T Consensus 261 pvLNk~LkGhR~GElTvlTGpTGsGKTTFls 291 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLTGPTGSGKTTFLS 291 (514)
T ss_pred hHHHHHhccCCCCceEEEecCCCCCceeEeh
Confidence 4455555567899999999999999999876
No 498
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=86.09 E-value=0.67 Score=48.34 Aligned_cols=26 Identities=42% Similarity=0.488 Sum_probs=21.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
+..++.+.|++|+|||||..-|+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45688999999999999998876533
No 499
>CHL00189 infB translation initiation factor 2; Provisional
Probab=85.97 E-value=0.65 Score=51.54 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
+.-+++++||.|+||||+++.|++.
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~ 267 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKT 267 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3457899999999999999999864
No 500
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=85.92 E-value=0.77 Score=40.23 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHh
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
.+|.|+.|=|.=||||||+-+-|.
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~ 46 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIA 46 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHH
Confidence 688999999999999999988664
Done!