Query 011717
Match_columns 479
No_of_seqs 228 out of 2790
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 13:54:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011717.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011717hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 99.6 1.6E-15 5.6E-20 151.4 6.7 64 404-478 22-85 (366)
2 3gfo_A Cobalt import ATP-bindi 99.6 2.6E-15 8.8E-20 145.3 7.8 61 405-479 6-66 (275)
3 2pcj_A ABC transporter, lipopr 99.6 2.8E-15 9.5E-20 141.0 6.8 58 406-478 4-61 (224)
4 4g1u_C Hemin import ATP-bindin 99.5 5.1E-15 1.7E-19 142.7 8.1 59 405-478 10-68 (266)
5 1g6h_A High-affinity branched- 99.5 2.9E-15 9.8E-20 143.9 6.2 60 404-478 5-64 (257)
6 1vpl_A ABC transporter, ATP-bi 99.5 3.4E-15 1.2E-19 143.0 6.5 59 405-478 14-72 (256)
7 1ji0_A ABC transporter; ATP bi 99.5 4.6E-15 1.6E-19 141.0 7.2 59 405-478 5-63 (240)
8 3tif_A Uncharacterized ABC tra 99.5 2.9E-15 9.9E-20 141.9 5.7 62 407-479 2-63 (235)
9 2olj_A Amino acid ABC transpor 99.5 4.2E-15 1.4E-19 142.9 6.6 58 406-478 24-81 (263)
10 2ihy_A ABC transporter, ATP-bi 99.5 5.1E-15 1.7E-19 143.6 7.0 60 404-478 19-78 (279)
11 1b0u_A Histidine permease; ABC 99.5 4.9E-15 1.7E-19 142.6 6.6 58 406-478 6-63 (262)
12 3fvq_A Fe(3+) IONS import ATP- 99.5 4.7E-15 1.6E-19 148.1 6.2 58 406-478 4-61 (359)
13 3rlf_A Maltose/maltodextrin im 99.5 7.3E-15 2.5E-19 147.7 6.6 59 406-479 3-61 (381)
14 2pze_A Cystic fibrosis transme 99.5 1.4E-14 4.8E-19 136.6 7.2 61 405-478 5-65 (229)
15 1sgw_A Putative ABC transporte 99.5 1.1E-14 3.7E-19 135.7 6.2 59 404-478 8-66 (214)
16 2ff7_A Alpha-hemolysin translo 99.5 1.6E-14 5.3E-19 137.9 7.2 61 405-478 6-66 (247)
17 2nq2_C Hypothetical ABC transp 99.5 1.5E-14 5.2E-19 138.4 7.2 59 406-478 4-62 (253)
18 1z47_A CYSA, putative ABC-tran 99.5 1.5E-14 5.1E-19 144.4 7.1 60 404-478 12-72 (355)
19 2yyz_A Sugar ABC transporter, 99.5 1.7E-14 6E-19 144.3 6.5 58 406-478 3-60 (359)
20 2yz2_A Putative ABC transporte 99.5 2E-14 6.8E-19 138.7 6.4 62 407-478 3-64 (266)
21 1mv5_A LMRA, multidrug resista 99.5 2.5E-14 8.5E-19 136.2 7.0 58 407-478 2-59 (243)
22 2it1_A 362AA long hypothetical 99.5 2.6E-14 9E-19 143.1 7.0 58 406-478 3-60 (362)
23 2cbz_A Multidrug resistance-as 99.5 2.5E-14 8.5E-19 135.6 6.2 60 406-478 3-62 (237)
24 1g29_1 MALK, maltose transport 99.5 2.6E-14 9.1E-19 143.8 6.7 58 406-478 3-60 (372)
25 2ixe_A Antigen peptide transpo 99.5 2.7E-14 9.2E-19 138.1 6.5 62 405-478 15-76 (271)
26 1v43_A Sugar-binding transport 99.5 3.1E-14 1.1E-18 143.1 6.6 58 406-478 11-68 (372)
27 2d2e_A SUFC protein; ABC-ATPas 99.5 2.5E-14 8.5E-19 136.7 5.5 58 406-478 3-62 (250)
28 1oxx_K GLCV, glucose, ABC tran 99.5 2E-14 7E-19 143.8 4.5 58 406-478 3-62 (353)
29 2zu0_C Probable ATP-dependent 99.5 3E-14 1E-18 137.5 5.3 59 405-478 19-79 (267)
30 3nh6_A ATP-binding cassette SU 99.4 1.6E-13 5.5E-18 134.5 7.1 60 405-478 52-111 (306)
31 2pjz_A Hypothetical protein ST 99.4 1.2E-13 4.2E-18 132.7 5.4 59 407-478 2-60 (263)
32 2ghi_A Transport protein; mult 99.4 2.6E-13 8.8E-18 130.4 6.6 61 405-478 16-76 (260)
33 3gd7_A Fusion complex of cysti 99.4 2.7E-13 9.1E-18 137.2 6.5 61 404-478 17-77 (390)
34 2bbs_A Cystic fibrosis transme 99.3 3.3E-13 1.1E-17 131.5 3.9 57 405-478 39-95 (290)
35 1htw_A HI0065; nucleotide-bind 99.3 8E-14 2.7E-18 123.6 -4.5 44 435-479 21-64 (158)
36 4a82_A Cystic fibrosis transme 99.2 4.1E-12 1.4E-16 135.8 6.0 62 404-478 337-398 (578)
37 3b5x_A Lipid A export ATP-bind 99.2 6.8E-12 2.3E-16 134.3 7.4 61 405-478 340-400 (582)
38 2iw3_A Elongation factor 3A; a 99.2 4.9E-12 1.7E-16 140.3 6.2 63 404-479 669-731 (986)
39 3b60_A Lipid A export ATP-bind 99.2 8.4E-12 2.9E-16 133.6 7.3 61 405-478 340-400 (582)
40 3qf4_B Uncharacterized ABC tra 99.2 2.9E-12 9.8E-17 137.5 2.9 60 405-478 353-412 (598)
41 3qf4_A ABC transporter, ATP-bi 99.2 8E-12 2.7E-16 133.7 6.3 62 404-478 339-400 (587)
42 2yl4_A ATP-binding cassette SU 99.2 9E-12 3.1E-16 133.7 6.4 60 407-478 342-401 (595)
43 3bk7_A ABC transporter ATP-bin 99.2 3.7E-11 1.3E-15 128.5 8.3 60 404-479 355-414 (607)
44 1yqt_A RNAse L inhibitor; ATP- 99.1 4.3E-11 1.5E-15 126.5 8.2 60 404-479 285-344 (538)
45 3ozx_A RNAse L inhibitor; ATP 99.1 4E-11 1.4E-15 126.5 7.9 59 404-478 267-325 (538)
46 1yqt_A RNAse L inhibitor; ATP- 99.1 2E-11 6.9E-16 129.0 5.7 58 406-478 20-78 (538)
47 3bk7_A ABC transporter ATP-bin 99.1 2.3E-11 8E-16 130.0 5.7 58 406-478 83-148 (607)
48 3j16_B RLI1P; ribosome recycli 99.0 1.8E-10 6.1E-15 123.0 5.7 43 435-478 92-134 (608)
49 3g5u_A MCG1178, multidrug resi 99.0 2.4E-10 8.3E-15 132.3 7.0 62 405-478 386-447 (1284)
50 2obl_A ESCN; ATPase, hydrolase 99.0 2.9E-11 9.9E-16 120.7 -0.9 59 405-478 44-102 (347)
51 3g5u_A MCG1178, multidrug resi 98.9 4.1E-10 1.4E-14 130.4 5.5 62 405-478 1029-1090(1284)
52 3euj_A Chromosome partition pr 98.9 3.1E-10 1.1E-14 117.4 3.6 44 435-479 18-61 (483)
53 1tq4_A IIGP1, interferon-induc 98.9 2.4E-10 8.1E-15 116.3 -0.2 45 435-479 37-101 (413)
54 2iw3_A Elongation factor 3A; a 98.8 2.7E-09 9.4E-14 118.5 7.7 51 404-469 433-483 (986)
55 4f4c_A Multidrug resistance pr 98.8 1.9E-09 6.5E-14 125.2 6.7 62 405-478 1075-1136(1321)
56 3j16_B RLI1P; ribosome recycli 98.8 1.6E-09 5.4E-14 115.7 4.6 43 435-477 361-408 (608)
57 3ux8_A Excinuclease ABC, A sub 98.8 1.8E-09 6E-14 117.5 4.3 43 435-477 32-95 (670)
58 2dpy_A FLII, flagellum-specifi 98.8 3E-10 1E-14 116.8 -2.2 59 405-478 130-188 (438)
59 2v9p_A Replication protein E1; 98.8 7.2E-11 2.4E-15 115.4 -6.6 53 407-478 102-154 (305)
60 3b9q_A Chloroplast SRP recepto 98.7 1E-09 3.6E-14 107.4 -0.1 43 436-478 89-131 (302)
61 4f4c_A Multidrug resistance pr 98.7 8.6E-09 3E-13 119.7 7.6 62 405-478 414-475 (1321)
62 1sq5_A Pantothenate kinase; P- 98.7 2E-10 6.9E-15 113.0 -5.9 57 405-478 36-113 (308)
63 3aez_A Pantothenate kinase; tr 98.7 4E-10 1.4E-14 110.8 -5.0 56 404-476 41-119 (312)
64 2qm8_A GTPase/ATPase; G protei 98.7 2E-10 6.7E-15 114.4 -7.5 57 407-478 30-86 (337)
65 1tf7_A KAIC; homohexamer, hexa 98.7 1.3E-09 4.4E-14 115.1 -1.8 45 435-479 26-73 (525)
66 2og2_A Putative signal recogni 98.6 4.2E-09 1.4E-13 105.2 -0.5 42 437-478 147-188 (359)
67 2pt7_A CAG-ALFA; ATPase, prote 98.6 3.8E-09 1.3E-13 104.8 -2.1 43 436-478 160-202 (330)
68 2yhs_A FTSY, cell division pro 98.5 7.8E-09 2.7E-13 106.6 -0.3 42 437-478 283-324 (503)
69 2npi_A Protein CLP1; CLP1-PCF1 98.5 4.5E-09 1.5E-13 108.7 -2.9 52 405-477 117-169 (460)
70 2gza_A Type IV secretion syste 98.5 9.4E-09 3.2E-13 103.3 -0.5 43 436-478 164-206 (361)
71 2qag_B Septin-6, protein NEDD5 98.5 1.2E-08 4.2E-13 103.7 -0.8 50 405-471 15-66 (427)
72 2qag_C Septin-7; cell cycle, c 98.4 9.4E-08 3.2E-12 97.5 4.6 51 405-476 10-60 (418)
73 2oap_1 GSPE-2, type II secreti 98.4 1.7E-08 5.9E-13 105.7 -1.3 44 435-478 248-291 (511)
74 1cr0_A DNA primase/helicase; R 98.4 2.3E-08 7.8E-13 97.5 -1.5 42 435-476 23-64 (296)
75 2ehv_A Hypothetical protein PH 98.4 5.7E-08 2E-12 91.7 0.6 41 436-477 18-62 (251)
76 3ux8_A Excinuclease ABC, A sub 98.4 1.2E-07 4.1E-12 103.0 2.8 34 435-468 336-369 (670)
77 3e70_C DPA, signal recognition 98.3 1.1E-07 3.7E-12 94.0 1.2 35 444-478 126-160 (328)
78 1u0l_A Probable GTPase ENGC; p 98.3 3.4E-07 1.2E-11 89.5 4.3 37 442-478 164-200 (301)
79 1rj9_A FTSY, signal recognitio 98.3 1.6E-07 5.6E-12 91.8 1.9 33 446-478 101-133 (304)
80 1lw7_A Transcriptional regulat 98.3 5.4E-08 1.8E-12 97.9 -1.7 42 437-478 158-205 (365)
81 2rcn_A Probable GTPase ENGC; Y 98.3 4.9E-07 1.7E-11 90.0 4.7 42 436-478 205-247 (358)
82 2vf7_A UVRA2, excinuclease ABC 98.2 5.6E-07 1.9E-11 99.0 4.4 47 404-470 500-547 (842)
83 4aby_A DNA repair protein RECN 98.2 2E-07 6.8E-12 95.2 0.6 39 435-474 49-87 (415)
84 1t9h_A YLOQ, probable GTPase E 98.2 1.4E-07 4.7E-12 92.2 -1.0 37 442-478 168-204 (307)
85 2o8b_B DNA mismatch repair pro 98.2 7.7E-07 2.6E-11 100.3 4.3 53 405-472 749-813 (1022)
86 2yv5_A YJEQ protein; hydrolase 98.2 1E-06 3.5E-11 86.1 4.7 35 443-478 161-195 (302)
87 3nwj_A ATSK2; P loop, shikimat 98.1 1.6E-07 5.3E-12 89.3 -2.2 51 405-469 16-70 (250)
88 1p9r_A General secretion pathw 98.1 1E-06 3.5E-11 89.8 2.0 42 435-478 157-198 (418)
89 2ewv_A Twitching motility prot 98.0 3.1E-07 1.1E-11 92.4 -1.9 41 436-478 127-168 (372)
90 3thx_A DNA mismatch repair pro 98.0 1.8E-06 6.3E-11 96.1 3.8 42 435-476 650-699 (934)
91 1ewq_A DNA mismatch repair pro 98.0 1.3E-06 4.5E-11 95.4 1.9 40 435-477 567-607 (765)
92 3thx_B DNA mismatch repair pro 98.0 1.6E-06 5.6E-11 96.3 2.5 35 435-469 661-695 (918)
93 1udx_A The GTP-binding protein 98.0 2E-06 6.9E-11 87.6 2.8 35 437-471 147-181 (416)
94 1wb9_A DNA mismatch repair pro 98.0 3.2E-06 1.1E-10 93.0 4.0 35 435-470 596-630 (800)
95 3jvv_A Twitching mobility prot 97.9 7.9E-07 2.7E-11 88.8 -2.0 35 443-477 119-154 (356)
96 3pih_A Uvrabc system protein A 97.9 9E-06 3.1E-10 90.2 6.0 40 435-474 598-646 (916)
97 1in4_A RUVB, holliday junction 97.9 1.4E-07 4.7E-12 93.7 -7.9 44 435-478 32-86 (334)
98 3szr_A Interferon-induced GTP- 97.9 3.1E-06 1.1E-10 90.7 1.7 36 441-479 42-78 (608)
99 3ec2_A DNA replication protein 97.8 1.3E-06 4.3E-11 78.4 -1.6 34 443-476 34-67 (180)
100 2ygr_A Uvrabc system protein A 97.8 6.7E-06 2.3E-10 91.3 3.0 32 436-467 657-688 (993)
101 2r6f_A Excinuclease ABC subuni 97.8 5.7E-06 1.9E-10 91.5 2.3 33 436-468 639-671 (972)
102 1zu4_A FTSY; GTPase, signal re 97.8 3.3E-06 1.1E-10 83.1 -0.3 41 438-478 96-136 (320)
103 2kjq_A DNAA-related protein; s 97.7 4.6E-06 1.6E-10 72.6 -0.4 36 435-476 29-64 (149)
104 4eun_A Thermoresistant glucoki 97.7 1.6E-05 5.5E-10 72.4 3.1 34 437-470 19-52 (200)
105 1svm_A Large T antigen; AAA+ f 97.7 5.2E-06 1.8E-10 83.4 -0.5 36 435-470 157-192 (377)
106 2p67_A LAO/AO transport system 97.6 3.2E-06 1.1E-10 84.0 -2.4 43 435-477 44-86 (341)
107 1vma_A Cell division protein F 97.6 7.5E-06 2.6E-10 80.0 0.0 39 440-478 97-135 (306)
108 1pzn_A RAD51, DNA repair and r 97.6 7.5E-06 2.6E-10 81.6 0.0 41 435-475 118-161 (349)
109 3tqc_A Pantothenate kinase; bi 97.6 4.8E-06 1.6E-10 81.8 -1.8 43 435-477 74-124 (321)
110 2px0_A Flagellar biosynthesis 97.6 1.2E-05 4E-10 78.3 0.8 32 445-476 103-134 (296)
111 2x8a_A Nuclear valosin-contain 97.6 7.5E-06 2.6E-10 78.8 -0.6 37 435-473 34-70 (274)
112 1ls1_A Signal recognition part 97.5 1.6E-05 5.4E-10 77.3 0.4 39 438-478 91-129 (295)
113 3cr8_A Sulfate adenylyltranfer 97.5 1.6E-05 5.5E-10 83.8 0.1 34 443-476 365-398 (552)
114 2www_A Methylmalonic aciduria 97.4 3.9E-05 1.3E-09 76.4 1.3 33 445-477 72-104 (349)
115 1oix_A RAS-related protein RAB 97.3 6.3E-05 2.2E-09 67.8 2.1 25 449-473 31-55 (191)
116 1tf7_A KAIC; homohexamer, hexa 97.2 5.1E-05 1.7E-09 79.8 0.3 34 441-474 275-308 (525)
117 1ixz_A ATP-dependent metallopr 97.2 4.4E-05 1.5E-09 72.2 -0.6 36 435-472 39-74 (254)
118 1f2t_A RAD50 ABC-ATPase; DNA d 97.2 0.0002 6.7E-09 62.1 3.6 29 439-468 16-44 (149)
119 1iy2_A ATP-dependent metallopr 97.1 5.4E-05 1.9E-09 72.7 -0.6 36 435-472 63-98 (278)
120 1nlf_A Regulatory protein REPA 97.1 0.00023 7.9E-09 68.3 3.1 30 443-472 26-55 (279)
121 3lda_A DNA repair protein RAD5 97.0 0.00032 1.1E-08 70.9 3.1 41 436-476 166-209 (400)
122 3t34_A Dynamin-related protein 96.9 0.00037 1.3E-08 69.5 3.4 41 435-478 25-67 (360)
123 2ffh_A Protein (FFH); SRP54, s 96.9 0.00019 6.5E-09 73.0 1.1 39 438-478 91-129 (425)
124 4ad8_A DNA repair protein RECN 96.8 0.00021 7.2E-09 74.9 -0.1 34 436-470 50-83 (517)
125 3k1j_A LON protease, ATP-depen 96.7 0.00017 5.9E-09 77.1 -0.9 41 435-475 48-88 (604)
126 1j8m_F SRP54, signal recogniti 96.7 0.00014 4.9E-09 70.6 -1.4 38 440-478 92-129 (297)
127 3m6a_A ATP-dependent protease 96.7 0.00015 5E-09 76.6 -2.0 43 435-478 97-139 (543)
128 2qag_A Septin-2, protein NEDD5 96.7 0.00024 8.1E-09 71.0 -0.3 49 406-475 17-65 (361)
129 1sxj_C Activator 1 40 kDa subu 96.5 6.7E-05 2.3E-09 74.2 -5.5 41 435-475 32-74 (340)
130 3ice_A Transcription terminati 96.5 0.00061 2.1E-08 67.9 1.0 51 406-470 133-197 (422)
131 3lxx_A GTPase IMAP family memb 96.4 0.0018 6.1E-08 60.3 4.0 28 449-476 31-58 (239)
132 1sxj_E Activator 1 40 kDa subu 96.3 0.0014 4.7E-08 64.8 2.2 29 450-478 39-68 (354)
133 2qtf_A Protein HFLX, GTP-bindi 96.2 0.0021 7.2E-08 64.1 3.1 24 449-472 181-204 (364)
134 1odf_A YGR205W, hypothetical 3 95.9 0.0017 5.9E-08 62.7 0.9 28 446-473 30-57 (290)
135 3kl4_A SRP54, signal recogniti 95.9 0.0017 5.9E-08 66.1 0.9 32 446-477 96-127 (433)
136 1mky_A Probable GTP-binding pr 95.8 0.0043 1.5E-07 63.5 3.6 24 449-472 182-205 (439)
137 3hr8_A Protein RECA; alpha and 95.8 0.0019 6.7E-08 64.0 0.7 43 436-478 48-92 (356)
138 2dhr_A FTSH; AAA+ protein, hex 95.2 0.0033 1.1E-07 65.3 -0.0 35 436-472 55-89 (499)
139 2zr9_A Protein RECA, recombina 94.9 0.0056 1.9E-07 60.7 0.7 36 436-471 48-85 (349)
140 2e87_A Hypothetical protein PH 94.8 0.012 4.1E-07 58.4 2.9 25 448-472 168-192 (357)
141 2r6a_A DNAB helicase, replicat 94.5 0.0028 9.7E-08 65.2 -2.6 42 435-476 191-232 (454)
142 4ag6_A VIRB4 ATPase, type IV s 94.4 0.0098 3.3E-07 59.7 1.1 33 446-478 34-66 (392)
143 2p5t_B PEZT; postsegregational 94.2 0.018 6.3E-07 54.0 2.4 28 445-472 30-57 (253)
144 3llm_A ATP-dependent RNA helic 94.1 0.018 6.2E-07 53.3 2.2 25 444-468 73-97 (235)
145 1lv7_A FTSH; alpha/beta domain 94.1 0.016 5.4E-07 54.4 1.8 22 450-471 48-69 (257)
146 1ypw_A Transitional endoplasmi 94.1 0.016 5.5E-07 63.9 1.9 32 442-473 233-264 (806)
147 2ged_A SR-beta, signal recogni 93.8 0.026 8.8E-07 50.0 2.5 23 449-471 50-72 (193)
148 1sky_E F1-ATPase, F1-ATP synth 93.6 0.021 7.3E-07 58.4 1.7 35 435-470 140-174 (473)
149 1gvn_B Zeta; postsegregational 93.2 0.045 1.5E-06 52.5 3.3 24 446-469 32-55 (287)
150 3cnl_A YLQF, putative uncharac 93.1 0.052 1.8E-06 51.3 3.5 26 448-473 100-125 (262)
151 3def_A T7I23.11 protein; chlor 92.6 0.084 2.9E-06 49.6 4.1 23 449-471 38-60 (262)
152 3cf0_A Transitional endoplasmi 92.4 0.036 1.2E-06 53.4 1.2 29 443-471 45-73 (301)
153 2atv_A RERG, RAS-like estrogen 92.3 0.079 2.7E-06 47.0 3.4 22 449-470 30-51 (196)
154 2ius_A DNA translocase FTSK; n 92.3 0.055 1.9E-06 56.1 2.5 39 439-477 159-199 (512)
155 2vf7_A UVRA2, excinuclease ABC 92.2 0.09 3.1E-06 57.8 4.2 30 435-464 24-53 (842)
156 1gwn_A RHO-related GTP-binding 92.1 0.07 2.4E-06 48.1 2.8 21 450-470 31-51 (205)
157 4fcw_A Chaperone protein CLPB; 92.0 0.044 1.5E-06 52.7 1.4 29 448-476 48-76 (311)
158 2wsm_A Hydrogenase expression/ 92.0 0.066 2.2E-06 48.5 2.5 22 449-470 32-53 (221)
159 4dhe_A Probable GTP-binding pr 91.9 0.045 1.5E-06 49.6 1.3 23 449-471 31-53 (223)
160 3dm5_A SRP54, signal recogniti 91.9 0.093 3.2E-06 53.4 3.6 24 446-469 99-122 (443)
161 1h65_A Chloroplast outer envel 91.7 0.12 4E-06 48.9 3.9 23 449-471 41-63 (270)
162 2ce7_A Cell division protein F 91.6 0.031 1.1E-06 57.6 -0.2 33 436-470 40-72 (476)
163 2qu8_A Putative nucleolar GTP- 91.3 0.11 3.7E-06 47.5 3.2 23 449-471 31-53 (228)
164 1fnn_A CDC6P, cell division co 91.2 0.077 2.6E-06 52.5 2.2 26 449-474 46-71 (389)
165 2j1l_A RHO-related GTP-binding 91.0 0.11 3.9E-06 46.9 3.0 21 450-470 37-57 (214)
166 2r6f_A Excinuclease ABC subuni 91.0 0.12 4.3E-06 57.2 3.7 30 435-464 32-61 (972)
167 2ygr_A Uvrabc system protein A 91.0 0.12 4.3E-06 57.4 3.7 30 435-464 34-63 (993)
168 2p5s_A RAS and EF-hand domain 90.9 0.1 3.5E-06 46.4 2.5 23 449-471 30-52 (199)
169 1ko7_A HPR kinase/phosphatase; 90.8 0.2 6.7E-06 48.6 4.6 34 435-469 133-166 (314)
170 1v5w_A DMC1, meiotic recombina 90.8 0.11 3.8E-06 51.1 2.9 35 436-470 110-145 (343)
171 4gzl_A RAS-related C3 botulinu 90.7 0.15 5.1E-06 45.7 3.4 21 449-469 32-52 (204)
172 2b6h_A ADP-ribosylation factor 90.4 0.13 4.5E-06 45.6 2.7 21 450-470 32-52 (192)
173 2g3y_A GTP-binding protein GEM 90.2 0.17 5.7E-06 46.0 3.3 22 449-470 39-60 (211)
174 2qby_A CDC6 homolog 1, cell di 89.9 0.12 4.1E-06 50.8 2.2 27 446-472 44-70 (386)
175 2v3c_C SRP54, signal recogniti 89.6 0.11 3.6E-06 52.9 1.6 24 448-471 100-123 (432)
176 3bos_A Putative DNA replicatio 89.6 0.22 7.5E-06 45.3 3.6 25 446-470 51-75 (242)
177 2z43_A DNA repair and recombin 89.4 0.18 6.3E-06 49.0 3.1 35 436-470 95-130 (324)
178 1puj_A YLQF, conserved hypothe 89.3 0.26 8.7E-06 47.0 3.9 24 448-471 121-144 (282)
179 2hup_A RAS-related protein RAB 89.3 0.15 5.3E-06 45.5 2.3 21 450-470 32-52 (201)
180 3p32_A Probable GTPase RV1496/ 89.2 0.18 6.3E-06 49.7 3.0 23 448-470 80-102 (355)
181 2xau_A PRE-mRNA-splicing facto 89.2 0.069 2.4E-06 58.5 -0.2 31 444-474 106-136 (773)
182 2hf9_A Probable hydrogenase ni 89.0 0.21 7.1E-06 45.3 3.0 22 449-470 40-61 (226)
183 2j37_W Signal recognition part 89.0 0.21 7.3E-06 51.7 3.4 22 447-468 101-122 (504)
184 2w58_A DNAI, primosome compone 88.8 0.27 9.3E-06 43.8 3.6 25 448-472 55-79 (202)
185 3tlx_A Adenylate kinase 2; str 87.6 0.35 1.2E-05 44.8 3.6 21 448-468 30-50 (243)
186 3b9p_A CG5977-PA, isoform A; A 87.6 0.28 9.6E-06 46.6 3.0 25 447-471 54-78 (297)
187 3dpu_A RAB family protein; roc 87.3 0.31 1E-05 50.9 3.3 22 450-471 44-65 (535)
188 1ypw_A Transitional endoplasmi 87.2 0.096 3.3E-06 57.7 -0.6 32 440-471 504-535 (806)
189 1lnz_A SPO0B-associated GTP-bi 87.1 0.35 1.2E-05 47.5 3.4 34 438-471 149-182 (342)
190 3umf_A Adenylate kinase; rossm 86.7 0.35 1.2E-05 44.2 2.9 22 447-468 29-50 (217)
191 3th5_A RAS-related C3 botulinu 86.5 0.13 4.6E-06 45.8 0.0 22 449-470 32-53 (204)
192 4a1f_A DNAB helicase, replicat 86.3 0.16 5.4E-06 49.8 0.5 35 435-469 34-68 (338)
193 2qmh_A HPR kinase/phosphorylas 86.3 0.77 2.6E-05 41.3 4.9 34 435-469 23-56 (205)
194 3geh_A MNME, tRNA modification 86.1 0.29 9.9E-06 50.2 2.3 22 449-470 226-247 (462)
195 2hjg_A GTP-binding protein ENG 85.9 0.4 1.4E-05 48.7 3.2 23 449-471 177-199 (436)
196 2i1q_A DNA repair and recombin 85.9 0.4 1.4E-05 46.3 3.1 34 436-469 86-120 (322)
197 2f6r_A COA synthase, bifunctio 85.6 0.43 1.5E-05 45.4 3.1 21 448-468 76-96 (281)
198 3l0i_B RAS-related protein RAB 85.6 0.13 4.3E-06 45.8 -0.7 22 450-471 36-57 (199)
199 1u94_A RECA protein, recombina 85.5 0.47 1.6E-05 46.8 3.4 35 435-469 49-85 (356)
200 3bh0_A DNAB-like replicative h 85.4 0.19 6.5E-06 48.7 0.5 34 435-468 56-89 (315)
201 2x2e_A Dynamin-1; nitration, h 85.2 0.43 1.5E-05 46.9 3.0 23 449-471 33-55 (353)
202 3zvl_A Bifunctional polynucleo 85.2 0.51 1.8E-05 47.6 3.6 25 445-469 256-280 (416)
203 2xxa_A Signal recognition part 85.1 0.5 1.7E-05 47.9 3.5 22 447-468 100-121 (433)
204 2qpt_A EH domain-containing pr 85.0 0.42 1.4E-05 50.1 2.9 23 449-471 67-89 (550)
205 3l0o_A Transcription terminati 84.7 0.51 1.7E-05 47.0 3.2 33 436-469 165-197 (427)
206 3ec1_A YQEH GTPase; atnos1, at 84.5 0.41 1.4E-05 47.5 2.5 25 446-470 161-185 (369)
207 1sxj_D Activator 1 41 kDa subu 84.5 0.42 1.4E-05 46.4 2.5 22 450-471 61-82 (353)
208 2z4s_A Chromosomal replication 84.4 0.38 1.3E-05 48.9 2.2 25 447-471 130-154 (440)
209 3gee_A MNME, tRNA modification 84.0 0.4 1.4E-05 49.3 2.2 22 449-470 235-256 (476)
210 1njg_A DNA polymerase III subu 83.7 0.68 2.3E-05 41.6 3.5 22 449-470 47-68 (250)
211 3o47_A ADP-ribosylation factor 83.6 0.44 1.5E-05 46.4 2.2 23 449-471 167-189 (329)
212 3izq_1 HBS1P, elongation facto 83.5 0.56 1.9E-05 49.8 3.2 22 449-470 169-190 (611)
213 1l8q_A Chromosomal replication 83.4 0.54 1.8E-05 45.3 2.8 24 448-471 38-61 (324)
214 3h2y_A GTPase family protein; 82.8 0.45 1.5E-05 47.2 1.9 25 446-470 159-183 (368)
215 1jbk_A CLPB protein; beta barr 82.8 0.84 2.9E-05 39.4 3.5 24 447-470 43-66 (195)
216 3a8t_A Adenylate isopentenyltr 82.6 0.94 3.2E-05 44.2 4.1 27 446-472 39-65 (339)
217 2ck3_D ATP synthase subunit be 82.4 0.85 2.9E-05 46.6 3.8 34 436-470 143-176 (482)
218 2j69_A Bacterial dynamin-like 82.3 0.87 3E-05 49.1 4.1 22 449-470 71-92 (695)
219 3e1s_A Exodeoxyribonuclease V, 82.2 0.79 2.7E-05 48.3 3.7 31 435-469 196-226 (574)
220 3h4m_A Proteasome-activating n 82.2 0.71 2.4E-05 43.4 3.0 27 445-471 49-75 (285)
221 4a9a_A Ribosome-interacting GT 81.9 0.58 2E-05 46.5 2.3 23 449-471 74-96 (376)
222 2zts_A Putative uncharacterize 81.7 0.9 3.1E-05 41.5 3.5 31 436-466 18-49 (251)
223 1f5n_A Interferon-induced guan 81.0 1 3.5E-05 47.5 3.9 24 448-471 39-62 (592)
224 2qz4_A Paraplegin; AAA+, SPG7, 80.4 1.1 3.6E-05 41.4 3.5 25 446-470 38-62 (262)
225 2q6t_A DNAB replication FORK h 80.3 0.41 1.4E-05 48.7 0.6 36 435-470 188-223 (444)
226 3mca_A HBS1, elongation factor 78.7 0.85 2.9E-05 48.2 2.5 21 449-469 179-199 (592)
227 2p65_A Hypothetical protein PF 78.7 1.1 3.6E-05 38.6 2.7 23 448-470 44-66 (187)
228 3vqt_A RF-3, peptide chain rel 78.4 1.1 3.6E-05 47.0 3.1 19 449-467 33-51 (548)
229 3p26_A Elongation factor 1 alp 78.1 0.74 2.5E-05 47.3 1.7 21 450-470 36-56 (483)
230 2wkq_A NPH1-1, RAS-related C3 78.0 1.1 3.9E-05 42.8 3.0 21 449-469 157-177 (332)
231 4dcu_A GTP-binding protein ENG 77.7 1.3 4.6E-05 45.0 3.5 25 447-471 195-219 (456)
232 1tue_A Replication protein E1; 77.6 1.1 3.7E-05 40.6 2.4 27 444-470 55-81 (212)
233 3qq5_A Small GTP-binding prote 77.5 0.31 1.1E-05 49.3 -1.3 23 449-471 36-58 (423)
234 2v1u_A Cell division control p 77.5 1.1 3.7E-05 43.8 2.7 25 446-470 43-67 (387)
235 1fx0_B ATP synthase beta chain 76.0 1.3 4.4E-05 45.5 2.7 34 436-470 155-188 (498)
236 3e2i_A Thymidine kinase; Zn-bi 75.6 1.8 6E-05 39.4 3.3 23 445-467 26-49 (219)
237 3lvq_E ARF-GAP with SH3 domain 75.6 1.4 4.9E-05 45.2 3.1 23 449-471 324-346 (497)
238 2c61_A A-type ATP synthase non 75.3 0.95 3.3E-05 46.1 1.6 35 436-471 142-176 (469)
239 1bif_A 6-phosphofructo-2-kinas 75.3 1.8 6E-05 44.3 3.6 23 447-469 39-61 (469)
240 1xzp_A Probable tRNA modificat 75.2 0.44 1.5E-05 49.0 -0.9 23 449-471 245-267 (482)
241 3gqb_A V-type ATP synthase alp 74.6 2 6.7E-05 44.6 3.7 33 436-469 211-243 (578)
242 1xp8_A RECA protein, recombina 73.9 1.8 6.1E-05 42.8 3.1 33 436-468 61-95 (366)
243 2qgz_A Helicase loader, putati 73.4 2.2 7.6E-05 40.9 3.6 23 447-469 152-174 (308)
244 3vr4_A V-type sodium ATPase ca 73.3 2.1 7.1E-05 44.7 3.5 33 436-469 222-254 (600)
245 1zcb_A G alpha I/13; GTP-bindi 73.2 1.8 6.2E-05 42.6 3.0 21 448-468 34-54 (362)
246 1r5b_A Eukaryotic peptide chai 72.8 1.4 4.9E-05 45.0 2.2 20 449-468 45-64 (467)
247 2vhj_A Ntpase P4, P4; non- hyd 72.6 2.6 8.8E-05 40.9 3.8 33 436-468 112-144 (331)
248 2chg_A Replication factor C sm 72.6 2.1 7.2E-05 37.7 3.1 20 450-469 41-60 (226)
249 3vr4_D V-type sodium ATPase su 72.5 1.2 4.2E-05 45.1 1.6 36 435-471 140-175 (465)
250 2r62_A Cell division protease 72.5 1.3 4.6E-05 41.1 1.8 21 450-470 47-67 (268)
251 3mfy_A V-type ATP synthase alp 72.4 1.8 6.1E-05 45.0 2.8 33 436-469 217-249 (588)
252 1knx_A Probable HPR(Ser) kinas 71.8 3.8 0.00013 39.4 4.8 32 435-467 136-167 (312)
253 3gqb_B V-type ATP synthase bet 71.8 1.1 3.8E-05 45.4 1.1 35 436-471 137-171 (464)
254 2r9v_A ATP synthase subunit al 71.5 1.9 6.6E-05 44.3 2.8 35 436-471 165-200 (515)
255 1x6v_B Bifunctional 3'-phospho 71.2 2.5 8.4E-05 44.9 3.6 24 446-469 51-74 (630)
256 2qby_B CDC6 homolog 3, cell di 70.7 2.5 8.5E-05 41.3 3.4 24 447-470 45-68 (384)
257 1lkx_A Myosin IE heavy chain; 70.4 2.6 8.8E-05 45.3 3.6 24 445-468 92-115 (697)
258 3syl_A Protein CBBX; photosynt 70.2 2.7 9.1E-05 39.8 3.4 23 447-469 67-89 (309)
259 2axn_A 6-phosphofructo-2-kinas 69.9 2.8 9.5E-05 43.5 3.6 23 446-468 34-56 (520)
260 2gks_A Bifunctional SAT/APS ki 69.6 2.7 9.3E-05 43.8 3.5 24 446-469 371-394 (546)
261 3pvs_A Replication-associated 69.5 1.6 5.3E-05 44.5 1.6 24 449-472 52-75 (447)
262 3avx_A Elongation factor TS, e 69.1 2 6.8E-05 48.8 2.4 22 449-470 298-319 (1289)
263 3upu_A ATP-dependent DNA helic 68.6 2.4 8.2E-05 43.1 2.8 21 449-469 47-67 (459)
264 3n70_A Transport activator; si 68.4 3.4 0.00012 34.4 3.3 23 449-471 26-48 (145)
265 1ofh_A ATP-dependent HSL prote 68.3 2.8 9.7E-05 39.5 3.1 23 448-470 51-73 (310)
266 2qe7_A ATP synthase subunit al 67.8 2.1 7.2E-05 43.9 2.1 35 436-471 152-187 (502)
267 4db1_A Myosin-7; S1DC, cardiac 67.0 3.2 0.00011 45.2 3.4 24 445-468 169-192 (783)
268 2v26_A Myosin VI; calmodulin-b 66.9 3.2 0.00011 45.2 3.4 24 445-468 138-161 (784)
269 1w9i_A Myosin II heavy chain; 66.2 3.5 0.00012 44.7 3.5 24 445-468 170-193 (770)
270 1fx0_A ATP synthase alpha chai 65.9 2 6.9E-05 44.1 1.6 36 436-472 153-189 (507)
271 2ck3_A ATP synthase subunit al 65.8 2.4 8.3E-05 43.5 2.1 34 436-470 152-186 (510)
272 1w7j_A Myosin VA; motor protei 65.8 3.6 0.00012 44.8 3.6 24 445-468 154-177 (795)
273 1e9r_A Conjugal transfer prote 65.4 3 0.0001 41.9 2.8 22 447-468 53-74 (437)
274 1m8p_A Sulfate adenylyltransfe 65.4 3.6 0.00012 43.2 3.4 25 445-469 394-418 (573)
275 1of1_A Thymidine kinase; trans 65.2 2.8 9.6E-05 41.4 2.4 23 449-471 51-73 (376)
276 1d2n_A N-ethylmaleimide-sensit 65.1 3.6 0.00012 38.2 3.1 21 449-469 66-86 (272)
277 3io5_A Recombination and repai 65.1 2.2 7.5E-05 41.3 1.5 22 443-465 25-46 (333)
278 1w36_D RECD, exodeoxyribonucle 64.9 3.6 0.00012 43.5 3.3 23 446-468 163-185 (608)
279 3d8b_A Fidgetin-like protein 1 64.8 4.1 0.00014 39.8 3.5 24 447-470 117-140 (357)
280 3hws_A ATP-dependent CLP prote 64.6 3.6 0.00012 40.2 3.1 23 448-470 52-74 (363)
281 1ii2_A Phosphoenolpyruvate car 64.4 3.2 0.00011 42.8 2.7 20 445-464 211-230 (524)
282 2olr_A Phosphoenolpyruvate car 63.3 3.4 0.00012 42.6 2.6 20 445-464 239-258 (540)
283 3oaa_A ATP synthase subunit al 63.0 2.9 9.9E-05 42.8 2.1 35 435-470 151-186 (513)
284 1g41_A Heat shock protein HSLU 63.0 3.3 0.00011 41.9 2.5 23 450-472 53-75 (444)
285 2qen_A Walker-type ATPase; unk 62.8 4.8 0.00016 38.5 3.5 22 447-468 31-52 (350)
286 3uk6_A RUVB-like 2; hexameric 62.8 4.4 0.00015 39.4 3.3 26 446-471 69-94 (368)
287 3bgw_A DNAB-like replicative h 62.6 3.5 0.00012 41.8 2.6 34 435-468 185-218 (444)
288 4anj_A Unconventional myosin-V 62.2 4.3 0.00015 45.6 3.4 25 445-469 142-166 (1052)
289 1kk8_A Myosin heavy chain, str 61.7 3.8 0.00013 44.9 2.8 24 445-468 167-190 (837)
290 2ycu_A Non muscle myosin 2C, a 61.6 4.4 0.00015 45.4 3.4 24 445-468 144-167 (995)
291 1w5s_A Origin recognition comp 61.4 4.4 0.00015 39.9 3.1 22 448-469 51-74 (412)
292 1q57_A DNA primase/helicase; d 61.2 3 0.0001 42.9 1.8 33 436-468 231-263 (503)
293 1ytm_A Phosphoenolpyruvate car 61.0 4 0.00014 42.2 2.7 19 446-464 233-252 (532)
294 1xwi_A SKD1 protein; VPS4B, AA 61.0 5.5 0.00019 38.3 3.6 24 448-471 46-69 (322)
295 3te6_A Regulatory protein SIR3 60.9 4.2 0.00015 39.2 2.7 26 446-471 44-69 (318)
296 1um8_A ATP-dependent CLP prote 60.8 4.6 0.00016 39.6 3.1 24 448-471 73-96 (376)
297 1jr3_A DNA polymerase III subu 60.7 5.4 0.00019 38.6 3.6 23 449-471 40-62 (373)
298 3t15_A Ribulose bisphosphate c 60.7 4.9 0.00017 38.0 3.2 22 449-470 38-59 (293)
299 1g8f_A Sulfate adenylyltransfe 60.6 4.8 0.00016 41.6 3.2 27 445-471 393-419 (511)
300 1g8x_A Myosin II heavy chain f 60.0 4.8 0.00016 45.2 3.3 24 445-468 170-193 (1010)
301 2dfs_A Myosin-5A; myosin-V, in 59.9 5.2 0.00018 45.2 3.6 25 445-469 154-178 (1080)
302 1cip_A Protein (guanine nucleo 59.6 4.3 0.00015 39.8 2.5 18 450-467 35-52 (353)
303 3cmw_A Protein RECA, recombina 58.7 2.7 9.2E-05 49.7 1.0 29 443-471 728-756 (1706)
304 3czq_A Putative polyphosphate 58.2 7.5 0.00026 37.1 3.9 27 448-474 87-113 (304)
305 3pfi_A Holliday junction ATP-d 58.2 5.5 0.00019 38.2 3.1 21 450-470 58-78 (338)
306 3zvr_A Dynamin-1; hydrolase, D 57.5 6.4 0.00022 42.7 3.7 23 449-471 53-75 (772)
307 2r44_A Uncharacterized protein 57.5 4.2 0.00014 39.0 2.1 28 444-471 43-70 (331)
308 1iqp_A RFCS; clamp loader, ext 57.3 6 0.0002 37.4 3.1 21 450-470 49-69 (327)
309 3eie_A Vacuolar protein sortin 57.3 6.8 0.00023 37.5 3.6 23 448-470 52-74 (322)
310 1j3b_A ATP-dependent phosphoen 57.2 6.8 0.00023 40.4 3.6 31 434-464 212-242 (529)
311 2bjv_A PSP operon transcriptio 57.1 6.7 0.00023 36.1 3.4 24 449-472 31-54 (265)
312 1sxj_A Activator 1 95 kDa subu 56.6 6.9 0.00023 40.3 3.6 23 448-470 78-100 (516)
313 3pxg_A Negative regulator of g 56.0 5.6 0.00019 40.5 2.8 21 450-470 204-224 (468)
314 2j9r_A Thymidine kinase; TK1, 54.8 7.3 0.00025 35.2 3.0 22 445-466 26-47 (214)
315 4b3f_X DNA-binding protein smu 54.7 6.3 0.00021 41.9 3.0 22 446-467 204-225 (646)
316 3co5_A Putative two-component 54.4 4.4 0.00015 33.7 1.4 22 450-471 30-51 (143)
317 1sxj_B Activator 1 37 kDa subu 53.6 7.3 0.00025 36.7 3.1 20 450-469 45-64 (323)
318 2qp9_X Vacuolar protein sortin 53.1 7.4 0.00025 38.0 3.0 24 447-470 84-107 (355)
319 2chq_A Replication factor C sm 53.0 7.5 0.00026 36.5 3.0 20 450-469 41-60 (319)
320 3vkw_A Replicase large subunit 52.5 7.2 0.00025 39.4 2.9 26 443-468 157-182 (446)
321 3q5d_A Atlastin-1; G protein, 52.2 6.4 0.00022 39.9 2.4 23 448-470 68-90 (447)
322 2gk6_A Regulator of nonsense t 52.1 8.8 0.0003 40.6 3.7 23 447-469 195-217 (624)
323 1qvr_A CLPB protein; coiled co 52.1 5.6 0.00019 43.9 2.2 23 449-471 193-215 (854)
324 1hqc_A RUVB; extended AAA-ATPa 51.8 5.5 0.00019 37.8 1.9 21 449-469 40-60 (324)
325 2fna_A Conserved hypothetical 51.8 8 0.00027 36.9 3.1 22 448-469 31-52 (357)
326 2zan_A Vacuolar protein sortin 50.9 9.8 0.00033 38.4 3.6 26 446-471 166-191 (444)
327 3vfd_A Spastin; ATPase, microt 50.7 10 0.00035 37.3 3.6 25 446-470 147-171 (389)
328 2wjy_A Regulator of nonsense t 48.5 11 0.00036 41.3 3.6 23 447-469 371-393 (800)
329 1i84_S Smooth muscle myosin he 48.0 6.3 0.00022 45.1 1.8 24 445-468 167-190 (1184)
330 1z6t_A APAF-1, apoptotic prote 46.9 12 0.0004 39.0 3.6 23 447-469 147-169 (591)
331 2iut_A DNA translocase FTSK; n 46.1 11 0.00037 39.4 3.1 29 440-468 207-235 (574)
332 1qvr_A CLPB protein; coiled co 46.0 9.7 0.00033 41.9 2.9 24 448-471 589-612 (854)
333 1g8p_A Magnesium-chelatase 38 45.9 6.8 0.00023 37.6 1.4 23 450-472 48-70 (350)
334 4b4t_K 26S protease regulatory 45.1 7.9 0.00027 38.9 1.8 21 450-470 209-229 (428)
335 2c9o_A RUVB-like 1; hexameric 44.3 14 0.00049 37.2 3.7 24 448-471 64-87 (456)
336 1r6b_X CLPA protein; AAA+, N-t 44.2 14 0.00046 40.0 3.6 25 446-470 206-230 (758)
337 2xzl_A ATP-dependent helicase 43.8 14 0.00046 40.5 3.5 22 447-468 375-396 (802)
338 3hu3_A Transitional endoplasmi 42.9 14 0.00049 37.7 3.4 26 445-470 236-261 (489)
339 4b4t_M 26S protease regulatory 41.9 10 0.00036 38.1 2.1 21 450-470 218-238 (434)
340 3nbx_X ATPase RAVA; AAA+ ATPas 41.5 14 0.00049 37.9 3.1 36 436-471 30-65 (500)
341 4b4t_L 26S protease subunit RP 41.5 9.8 0.00034 38.4 1.8 21 450-470 218-238 (437)
342 1u0j_A DNA replication protein 41.3 18 0.0006 33.9 3.4 22 448-469 105-126 (267)
343 3c5h_A Glucocorticoid receptor 41.3 12 0.00041 34.4 2.3 17 453-469 34-50 (255)
344 3u61_B DNA polymerase accessor 40.3 17 0.00058 34.4 3.3 23 449-471 50-72 (324)
345 4b4t_J 26S protease regulatory 39.7 12 0.0004 37.4 2.0 21 450-470 185-205 (405)
346 1azs_C GS-alpha; complex (lyas 39.6 12 0.00043 37.1 2.2 19 449-467 42-60 (402)
347 3b6e_A Interferon-induced heli 39.1 10 0.00035 33.2 1.4 23 446-468 47-69 (216)
348 2gxq_A Heat resistant RNA depe 38.9 18 0.00062 31.4 3.1 18 447-464 38-55 (207)
349 4ido_A Atlastin-1; GTPase, GTP 38.2 22 0.00075 36.0 3.8 21 448-468 68-88 (457)
350 4akg_A Glutathione S-transfera 37.3 17 0.00059 45.0 3.3 22 448-469 924-945 (2695)
351 3cf2_A TER ATPase, transitiona 36.3 19 0.00065 39.3 3.2 23 450-472 241-263 (806)
352 3cmw_A Protein RECA, recombina 35.9 20 0.00068 42.5 3.4 33 435-467 20-54 (1706)
353 1r6b_X CLPA protein; AAA+, N-t 35.9 18 0.00063 38.9 3.1 22 449-470 490-511 (758)
354 3cmu_A Protein RECA, recombina 35.5 20 0.0007 43.1 3.5 35 435-469 369-405 (2050)
355 2a5y_B CED-4; apoptosis; HET: 35.1 22 0.00076 36.7 3.4 21 448-468 153-173 (549)
356 3cmu_A Protein RECA, recombina 35.0 25 0.00084 42.4 4.0 26 443-468 1423-1448(2050)
357 1vec_A ATP-dependent RNA helic 34.9 17 0.00057 31.7 2.1 20 446-465 39-58 (206)
358 3end_A Light-independent proto 34.7 26 0.00089 32.9 3.6 24 446-469 40-63 (307)
359 4b4t_H 26S protease regulatory 34.5 14 0.00049 37.4 1.7 21 450-470 246-266 (467)
360 1qde_A EIF4A, translation init 34.4 22 0.00074 31.4 2.8 19 446-464 50-68 (224)
361 3vkg_A Dynein heavy chain, cyt 33.3 20 0.00068 45.1 3.0 22 449-470 908-929 (3245)
362 4b4t_I 26S protease regulatory 33.0 17 0.00059 36.5 2.0 21 450-470 219-239 (437)
363 3pxi_A Negative regulator of g 32.8 23 0.00078 38.3 3.1 22 449-470 523-544 (758)
364 3czp_A Putative polyphosphate 32.4 26 0.00089 35.9 3.3 27 448-474 301-327 (500)
365 2pl3_A Probable ATP-dependent 32.3 26 0.0009 31.2 3.1 19 446-464 61-79 (236)
366 3pxi_A Negative regulator of g 31.1 23 0.00078 38.3 2.8 21 450-470 204-224 (758)
367 2va8_A SSO2462, SKI2-type heli 30.9 17 0.00059 38.8 1.8 20 446-465 45-64 (715)
368 2fz4_A DNA repair protein RAD2 30.4 31 0.0011 31.2 3.2 22 446-467 107-128 (237)
369 3iuy_A Probable ATP-dependent 30.3 28 0.00094 30.9 2.8 20 446-465 56-75 (228)
370 3f9v_A Minichromosome maintena 29.1 20 0.00067 37.7 1.8 24 449-472 329-352 (595)
371 3rc3_A ATP-dependent RNA helic 29.1 26 0.00089 37.4 2.7 17 446-462 154-170 (677)
372 3ber_A Probable ATP-dependent 29.1 29 0.001 31.5 2.8 20 446-465 79-98 (249)
373 3lk7_A UDP-N-acetylmuramoylala 29.0 32 0.0011 34.6 3.3 24 446-471 111-134 (451)
374 2z0m_A 337AA long hypothetical 28.5 32 0.0011 32.2 3.1 21 446-466 30-50 (337)
375 3rhf_A Putative polyphosphate 26.9 26 0.00088 33.1 1.9 25 449-473 77-101 (289)
376 1t6n_A Probable ATP-dependent 26.4 39 0.0013 29.6 3.1 20 447-466 51-70 (220)
377 3dkp_A Probable ATP-dependent 25.7 33 0.0011 30.8 2.5 19 446-464 65-83 (245)
378 2oxc_A Probable ATP-dependent 25.3 38 0.0013 30.1 2.8 20 445-464 59-78 (230)
379 2zj8_A DNA helicase, putative 25.1 23 0.00079 37.9 1.5 19 446-464 38-56 (720)
380 3czp_A Putative polyphosphate 24.5 31 0.0011 35.3 2.2 26 448-473 44-69 (500)
381 3bor_A Human initiation factor 24.4 28 0.00097 31.2 1.7 20 446-465 66-85 (237)
382 3flo_A DNA polymerase alpha su 24.4 27 0.00092 35.3 1.7 20 441-460 94-113 (460)
383 1q0u_A Bstdead; DEAD protein, 23.7 32 0.0011 30.2 2.0 19 447-465 41-59 (219)
384 3eag_A UDP-N-acetylmuramate:L- 23.2 45 0.0015 31.8 3.0 21 447-469 108-128 (326)
385 2oze_A ORF delta'; para, walke 22.5 36 0.0012 31.7 2.1 24 447-470 34-60 (298)
386 1wrb_A DJVLGB; RNA helicase, D 22.1 52 0.0018 29.6 3.1 19 446-464 59-77 (253)
387 1bg2_A Kinesin; motor protein, 22.0 31 0.0011 33.1 1.5 12 453-464 84-95 (325)
388 3o8b_A HCV NS3 protease/helica 21.9 29 0.001 36.9 1.4 22 444-465 229-250 (666)
389 3fe2_A Probable ATP-dependent 21.8 37 0.0013 30.5 2.0 19 446-464 65-83 (242)
390 1hv8_A Putative ATP-dependent 21.7 58 0.002 30.7 3.5 19 448-466 45-63 (367)
391 3fht_A ATP-dependent RNA helic 21.5 43 0.0015 32.4 2.5 18 447-464 64-81 (412)
392 2p6r_A Afuhel308 helicase; pro 21.5 20 0.00068 38.3 0.0 20 445-464 38-57 (702)
393 2h58_A Kinesin-like protein KI 20.8 34 0.0012 32.9 1.6 12 453-464 87-98 (330)
394 3cio_A ETK, tyrosine-protein k 20.6 61 0.0021 30.4 3.3 24 446-469 103-127 (299)
395 2i4i_A ATP-dependent RNA helic 20.0 53 0.0018 31.9 2.8 19 446-464 51-69 (417)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.57 E-value=1.6e-15 Score=151.45 Aligned_cols=64 Identities=23% Similarity=0.473 Sum_probs=56.8
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+..++++||+|.|+++ ++.+.|++|+||+|++||++||+|+|||||||++++|+|+.+||+|++
T Consensus 22 ~~mi~v~~ls~~y~~~-----------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I 85 (366)
T 3tui_C 22 KHMIKLSNITKVFHQG-----------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSV 85 (366)
T ss_dssp -CCEEEEEEEEEEECS-----------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred CceEEEEeEEEEeCCC-----------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEE
Confidence 4579999999999642 123479999999999999999999999999999999999999999986
No 2
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.57 E-value=2.6e-15 Score=145.30 Aligned_cols=61 Identities=28% Similarity=0.474 Sum_probs=55.7
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
..++++||+|.|++. ..|++|+||++++||++||+|||||||||++++|+|+++|++|+++
T Consensus 6 ~~l~i~~ls~~y~~~--------------~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~ 66 (275)
T 3gfo_A 6 YILKVEELNYNYSDG--------------THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66 (275)
T ss_dssp EEEEEEEEEEECTTS--------------CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred cEEEEEEEEEEECCC--------------CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEE
Confidence 479999999999542 1499999999999999999999999999999999999999999863
No 3
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.56 E-value=2.8e-15 Score=140.98 Aligned_cols=58 Identities=24% Similarity=0.485 Sum_probs=54.1
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++||+|.|++ ..+++|+||++++||++||+|||||||||++++|+|+.+|++|++
T Consensus 4 ~l~~~~l~~~y~~---------------~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i 61 (224)
T 2pcj_A 4 ILRAENIKKVIRG---------------YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61 (224)
T ss_dssp EEEEEEEEEEETT---------------EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEE
T ss_pred EEEEEeEEEEECC---------------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 5899999999953 159999999999999999999999999999999999999999986
No 4
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.55 E-value=5.1e-15 Score=142.72 Aligned_cols=59 Identities=27% Similarity=0.441 Sum_probs=55.1
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++||+|.|++. .+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus 10 ~~l~~~~l~~~~~~~---------------~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I 68 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQ---------------ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGEC 68 (266)
T ss_dssp CEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEE
T ss_pred ceEEEEeEEEEeCCe---------------eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence 479999999999532 69999999999999999999999999999999999999999986
No 5
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.55 E-value=2.9e-15 Score=143.88 Aligned_cols=60 Identities=28% Similarity=0.506 Sum_probs=55.2
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
...++++||+|.|++. .+++|+||++++||++||+|||||||||++++|+|+++|++|++
T Consensus 5 ~~~l~i~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i 64 (257)
T 1g6h_A 5 MEILRTENIVKYFGEF---------------KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 64 (257)
T ss_dssp CEEEEEEEEEEEETTE---------------EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred CcEEEEeeeEEEECCE---------------eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 3469999999999531 59999999999999999999999999999999999999999986
No 6
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.55 E-value=3.4e-15 Score=143.03 Aligned_cols=59 Identities=34% Similarity=0.524 Sum_probs=54.9
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++||+|.|++ +.+++++||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus 14 ~~l~i~~l~~~y~~---------------~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I 72 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK---------------KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72 (256)
T ss_dssp CCEEEEEEEEEETT---------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred CeEEEEEEEEEECC---------------EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 56999999999943 159999999999999999999999999999999999999999986
No 7
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.54 E-value=4.6e-15 Score=140.97 Aligned_cols=59 Identities=34% Similarity=0.622 Sum_probs=54.7
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+.++++||+|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus 5 ~~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i 63 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAI---------------HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63 (240)
T ss_dssp EEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred ceEEEEeEEEEECCe---------------eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 469999999999531 59999999999999999999999999999999999999999986
No 8
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.54 E-value=2.9e-15 Score=141.89 Aligned_cols=62 Identities=24% Similarity=0.464 Sum_probs=54.7
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
++++||+|.|++.. +...|++|+||++++||++||+|||||||||++++|+|+++|++|+++
T Consensus 2 l~~~~l~~~y~~~~-----------~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~ 63 (235)
T 3tif_A 2 VKLKNVTKTYKMGE-----------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY 63 (235)
T ss_dssp EEEEEEEEEEEETT-----------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred EEEEEEEEEeCCCC-----------cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEE
Confidence 68999999995321 123699999999999999999999999999999999999999999863
No 9
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.54 E-value=4.2e-15 Score=142.95 Aligned_cols=58 Identities=28% Similarity=0.587 Sum_probs=54.2
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++||+|.|++. .+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus 24 ~l~i~~l~~~y~~~---------------~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I 81 (263)
T 2olj_A 24 MIDVHQLKKSFGSL---------------EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81 (263)
T ss_dssp SEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred eEEEEeEEEEECCE---------------EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE
Confidence 59999999999531 59999999999999999999999999999999999999999986
No 10
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.54 E-value=5.1e-15 Score=143.65 Aligned_cols=60 Identities=32% Similarity=0.453 Sum_probs=55.3
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
...++++||+|.|++. .+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus 19 ~~~l~~~~l~~~y~~~---------------~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I 78 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQGK---------------TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78 (279)
T ss_dssp CEEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred CceEEEEeEEEEECCE---------------EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEE
Confidence 3469999999999531 59999999999999999999999999999999999999999986
No 11
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.54 E-value=4.9e-15 Score=142.61 Aligned_cols=58 Identities=21% Similarity=0.473 Sum_probs=54.1
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++||+|.|++. .+++|+||++++||++||+|||||||||++++|+|+++|++|++
T Consensus 6 ~l~i~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i 63 (262)
T 1b0u_A 6 KLHVIDLHKRYGGH---------------EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63 (262)
T ss_dssp CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred eEEEeeEEEEECCE---------------EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 59999999999531 58999999999999999999999999999999999999999986
No 12
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.53 E-value=4.7e-15 Score=148.06 Aligned_cols=58 Identities=28% Similarity=0.578 Sum_probs=54.3
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++||+|.|++. .|++|+||++++||+++|+|||||||||+++||+|+.+|++|++
T Consensus 4 ~l~i~~ls~~y~~~---------------~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I 61 (359)
T 3fvq_A 4 ALHIGHLSKSFQNT---------------PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61 (359)
T ss_dssp CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred EEEEEeEEEEECCE---------------EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEE
Confidence 58999999999532 69999999999999999999999999999999999999999986
No 13
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.52 E-value=7.3e-15 Score=147.68 Aligned_cols=59 Identities=25% Similarity=0.537 Sum_probs=54.5
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
.++++||+|.|++. .||+|+||++++||+++|+|||||||||++++|+|+++|++|+++
T Consensus 3 ~l~~~~l~~~yg~~---------------~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~ 61 (381)
T 3rlf_A 3 SVQLQNVTKAWGEV---------------VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61 (381)
T ss_dssp CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred EEEEEeEEEEECCE---------------EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEE
Confidence 48999999999532 699999999999999999999999999999999999999999863
No 14
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.51 E-value=1.4e-14 Score=136.62 Aligned_cols=61 Identities=21% Similarity=0.325 Sum_probs=55.1
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++|++|.|+++ ...+++++||++++||+++|+|||||||||++++|+|+++|++|++
T Consensus 5 ~~l~~~~l~~~y~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 65 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-------------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 65 (229)
T ss_dssp EEEEEEEEEECSSTT-------------SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred ceEEEEEEEEEeCCC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEE
Confidence 469999999999532 1258999999999999999999999999999999999999999986
No 15
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.51 E-value=1.1e-14 Score=135.73 Aligned_cols=59 Identities=24% Similarity=0.382 Sum_probs=54.4
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
...++++||+|.|++ .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus 8 ~~~l~~~~ls~~y~~----------------~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I 66 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK----------------PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66 (214)
T ss_dssp -CEEEEEEEEEESSS----------------EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred CceEEEEEEEEEeCC----------------eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence 457999999999942 48999999999999999999999999999999999999999986
No 16
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.50 E-value=1.6e-14 Score=137.86 Aligned_cols=61 Identities=13% Similarity=0.246 Sum_probs=54.5
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
--++++||+|.|++.. ..+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus 6 ~~~~~~~l~~~y~~~~-------------~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I 66 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDS-------------PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66 (247)
T ss_dssp EEEEEEEEEEESSTTS-------------CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred CceeEEEEEEEeCCCC-------------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 3589999999994210 158999999999999999999999999999999999999999986
No 17
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.50 E-value=1.5e-14 Score=138.36 Aligned_cols=59 Identities=25% Similarity=0.404 Sum_probs=54.2
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++||+|.|+++ ..+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus 4 ~l~i~~l~~~y~~~--------------~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I 62 (253)
T 2nq2_C 4 ALSVENLGFYYQAE--------------NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62 (253)
T ss_dssp EEEEEEEEEEETTT--------------TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEE
T ss_pred eEEEeeEEEEeCCC--------------CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 58999999999511 158999999999999999999999999999999999999999986
No 18
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.50 E-value=1.5e-14 Score=144.43 Aligned_cols=60 Identities=30% Similarity=0.628 Sum_probs=55.6
Q ss_pred CceEEEecceEEc-CCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTF-PGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y-~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
...++++||+|.| ++. .+++|+||++++||+++|+|||||||||++++|+|+.+|++|++
T Consensus 12 ~~~l~~~~l~~~y~g~~---------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I 72 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGA---------------RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72 (355)
T ss_dssp CEEEEEEEEEECCTTST---------------TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred CceEEEEEEEEEEcCCC---------------EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEE
Confidence 5689999999999 421 58999999999999999999999999999999999999999986
No 19
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.49 E-value=1.7e-14 Score=144.28 Aligned_cols=58 Identities=34% Similarity=0.576 Sum_probs=53.9
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++||+|.|++ +.|++|+||++++||+++|+|||||||||++++|+|+++|++|++
T Consensus 3 ~l~~~~l~~~y~~---------------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I 60 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---------------VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI 60 (359)
T ss_dssp CEEEEEEEEEETT---------------EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred EEEEEEEEEEECC---------------EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEE
Confidence 3889999999953 159999999999999999999999999999999999999999986
No 20
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.49 E-value=2e-14 Score=138.69 Aligned_cols=62 Identities=19% Similarity=0.356 Sum_probs=53.8
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
++++||+|.|+.+. ...+.+++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus 3 l~~~~l~~~y~~~~----------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I 64 (266)
T 2yz2_A 3 IEVVNVSHIFHRGT----------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV 64 (266)
T ss_dssp EEEEEEEEEESTTS----------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEEEEEEEecCCC----------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence 78999999995210 000259999999999999999999999999999999999999999986
No 21
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.49 E-value=2.5e-14 Score=136.17 Aligned_cols=58 Identities=19% Similarity=0.354 Sum_probs=53.0
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
++++||+|.|++. ..+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus 2 l~~~~l~~~y~~~--------------~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 59 (243)
T 1mv5_A 2 LSARHVDFAYDDS--------------EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59 (243)
T ss_dssp EEEEEEEECSSSS--------------SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCE
T ss_pred EEEEEEEEEeCCC--------------CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 6899999999421 158999999999999999999999999999999999999999986
No 22
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.48 E-value=2.6e-14 Score=143.13 Aligned_cols=58 Identities=29% Similarity=0.564 Sum_probs=53.8
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++||+|.|++. .+++|+||++++||+++|+|||||||||++++|+|+++|++|++
T Consensus 3 ~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I 60 (362)
T 2it1_A 3 EIKLENIVKKFGNF---------------TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60 (362)
T ss_dssp CEEEEEEEEESSSS---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred EEEEEeEEEEECCE---------------EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEE
Confidence 38999999999431 59999999999999999999999999999999999999999986
No 23
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.48 E-value=2.5e-14 Score=135.60 Aligned_cols=60 Identities=20% Similarity=0.353 Sum_probs=54.2
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++||+|.|++. ...+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus 3 ~l~~~~l~~~y~~~-------------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I 62 (237)
T 2cbz_A 3 SITVRNATFTWARS-------------DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62 (237)
T ss_dssp CEEEEEEEEESCTT-------------SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEE
T ss_pred eEEEEEEEEEeCCC-------------CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 48999999999531 1158999999999999999999999999999999999999999986
No 24
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.48 E-value=2.6e-14 Score=143.83 Aligned_cols=58 Identities=28% Similarity=0.530 Sum_probs=53.9
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++||+|.|++ +.+++|+||++++||+++|+|||||||||++++|+|+++|++|++
T Consensus 3 ~l~~~~l~~~y~~---------------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I 60 (372)
T 1g29_1 3 GVRLVDVWKVFGE---------------VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60 (372)
T ss_dssp EEEEEEEEEEETT---------------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred EEEEEeEEEEECC---------------EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEE
Confidence 4899999999953 159999999999999999999999999999999999999999986
No 25
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.48 E-value=2.7e-14 Score=138.05 Aligned_cols=62 Identities=26% Similarity=0.465 Sum_probs=55.2
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++||+|.|++.. ...+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus 15 ~~l~~~~l~~~y~~~~------------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I 76 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHP------------NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76 (271)
T ss_dssp CCEEEEEEEECCTTCT------------TSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred ceEEEEEEEEEeCCCC------------CceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE
Confidence 3599999999995410 1258999999999999999999999999999999999999999986
No 26
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.47 E-value=3.1e-14 Score=143.14 Aligned_cols=58 Identities=34% Similarity=0.615 Sum_probs=54.1
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++||+|.|++ +.+++|+||++++||+++|+|||||||||++++|+|+++|++|++
T Consensus 11 ~l~~~~l~~~y~~---------------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I 68 (372)
T 1v43_A 11 EVKLENLTKRFGN---------------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68 (372)
T ss_dssp CEEEEEEEEEETT---------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred eEEEEEEEEEECC---------------EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEE
Confidence 4899999999953 159999999999999999999999999999999999999999986
No 27
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.47 E-value=2.5e-14 Score=136.75 Aligned_cols=58 Identities=34% Similarity=0.546 Sum_probs=53.4
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC--CCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~--~~pTsG~a 478 (479)
.++++||+|.|++. .+++|+||++++||+++|+|+|||||||++++|+|+ ++|++|++
T Consensus 3 ~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I 62 (250)
T 2d2e_A 3 QLEIRDLWASIDGE---------------TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEI 62 (250)
T ss_dssp EEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEE
T ss_pred eEEEEeEEEEECCE---------------EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEE
Confidence 48899999999531 599999999999999999999999999999999998 89999986
No 28
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.46 E-value=2e-14 Score=143.76 Aligned_cols=58 Identities=29% Similarity=0.532 Sum_probs=53.7
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcc--eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYH--AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~--AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++||+|.|++ +. |++|+||++++||+++|+|||||||||++++|+|+++|++|++
T Consensus 3 ~l~i~~l~~~y~~---------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I 62 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---------------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62 (353)
T ss_dssp CEEEEEEEEEEGG---------------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEE
T ss_pred EEEEEeEEEEECC---------------EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Confidence 3889999999943 15 9999999999999999999999999999999999999999986
No 29
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.46 E-value=3e-14 Score=137.47 Aligned_cols=59 Identities=29% Similarity=0.516 Sum_probs=53.2
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC--CCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~--~~pTsG~a 478 (479)
..++++||+|.|++ +.+++|+||++++||+++|+|+|||||||++++|+|+ .+|++|++
T Consensus 19 ~~l~~~~l~~~y~~---------------~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I 79 (267)
T 2zu0_C 19 HMLSIKDLHVSVED---------------KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV 79 (267)
T ss_dssp -CEEEEEEEEEETT---------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEE
T ss_pred ceEEEEeEEEEECC---------------EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE
Confidence 35999999999943 1599999999999999999999999999999999998 57999986
No 30
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.41 E-value=1.6e-13 Score=134.47 Aligned_cols=60 Identities=18% Similarity=0.340 Sum_probs=55.2
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++||++.|++. ..+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus 52 ~~i~~~~vs~~y~~~--------------~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I 111 (306)
T 3nh6_A 52 GRIEFENVHFSYADG--------------RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI 111 (306)
T ss_dssp CCEEEEEEEEESSTT--------------CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEE
T ss_pred CeEEEEEEEEEcCCC--------------CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEE
Confidence 469999999999532 158999999999999999999999999999999999999999986
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.40 E-value=1.2e-13 Score=132.68 Aligned_cols=59 Identities=24% Similarity=0.486 Sum_probs=51.5
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
++++||+|.|++.. ....+++++||+++ ||+++|+|+|||||||++++|+|+. |++|++
T Consensus 2 l~~~~l~~~y~~~~-----------~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I 60 (263)
T 2pjz_A 2 IQLKNVGITLSGKG-----------YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNI 60 (263)
T ss_dssp EEEEEEEEEEEEET-----------TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEE
T ss_pred EEEEEEEEEeCCCC-----------ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEE
Confidence 68999999995310 01258999999999 9999999999999999999999999 999986
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.39 E-value=2.6e-13 Score=130.38 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=53.5
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++||+|.|++.. ...+++|+||++++||+++|+|+|||||||++++|+|+++| +|++
T Consensus 16 ~~l~i~~l~~~y~~~~------------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I 76 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQT------------NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDI 76 (260)
T ss_dssp CCEEEEEEEECCTTCC------------SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEE
T ss_pred CeEEEEEEEEEeCCCC------------cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEE
Confidence 3599999999995421 12589999999999999999999999999999999999987 7976
No 33
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.38 E-value=2.7e-13 Score=137.18 Aligned_cols=61 Identities=21% Similarity=0.338 Sum_probs=54.3
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
...++++||+|.|++. ...||+|+||+|++||+++|+|||||||||+++||+|+++ ++|++
T Consensus 17 ~~~i~~~~l~~~y~~~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I 77 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEG-------------GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEI 77 (390)
T ss_dssp SCCEEEEEEEEESSSS-------------SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEE
T ss_pred CCeEEEEEEEEEecCC-------------CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEE
Confidence 3469999999999532 1269999999999999999999999999999999999998 99986
No 34
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.34 E-value=3.3e-13 Score=131.48 Aligned_cols=57 Identities=23% Similarity=0.314 Sum_probs=43.2
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++||++.+ . .+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus 39 ~~l~~~~l~~~~--~---------------~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I 95 (290)
T 2bbs_A 39 DSLSFSNFSLLG--T---------------PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95 (290)
T ss_dssp -----------C--C---------------CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEE
T ss_pred ceEEEEEEEEcC--c---------------eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence 468999998853 1 48999999999999999999999999999999999999999986
No 35
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.27 E-value=8e-14 Score=123.58 Aligned_cols=44 Identities=27% Similarity=0.127 Sum_probs=42.0
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
.|++++||++++||+++|+|+|||||||++++|+|++ |++|++.
T Consensus 21 ~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~ 64 (158)
T 1htw_A 21 FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVK 64 (158)
T ss_dssp HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCC
T ss_pred HHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEE
Confidence 6999999999999999999999999999999999999 9999873
No 36
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.24 E-value=4.1e-12 Score=135.84 Aligned_cols=62 Identities=21% Similarity=0.321 Sum_probs=55.9
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+..++++|+++.|++.. ..+++|+||++++||++|++|||||||||++++|.|+++|++|++
T Consensus 337 ~~~i~~~~v~~~y~~~~-------------~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 398 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDNE-------------APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI 398 (578)
T ss_dssp SCCEEEEEEEECSCSSS-------------CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEE
T ss_pred CCeEEEEEEEEEcCCCC-------------CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEE
Confidence 34699999999996431 258999999999999999999999999999999999999999986
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.24 E-value=6.8e-12 Score=134.25 Aligned_cols=61 Identities=23% Similarity=0.367 Sum_probs=55.3
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++|+++.|+++. ..+++|+||++++||+++|+|||||||||++++|+|+++|++|++
T Consensus 340 ~~i~~~~v~~~y~~~~-------------~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 400 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKE-------------KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI 400 (582)
T ss_pred CeEEEEEEEEEcCCCC-------------ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE
Confidence 4699999999996421 258999999999999999999999999999999999999999986
No 38
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.23 E-value=4.9e-12 Score=140.35 Aligned_cols=63 Identities=30% Similarity=0.470 Sum_probs=55.9
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
+..++++||+|.|++.. +.+++|+||++++||++||+|+|||||||++++|+|+++|++|+++
T Consensus 669 ~~mL~v~nLs~~Y~g~~-------------~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~ 731 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTS-------------KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731 (986)
T ss_dssp SEEEEEEEEEECCTTCS-------------SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEE
T ss_pred CceEEEEeeEEEeCCCC-------------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 34699999999995421 1589999999999999999999999999999999999999999863
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.22 E-value=8.4e-12 Score=133.56 Aligned_cols=61 Identities=25% Similarity=0.438 Sum_probs=55.1
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++|+++.|+++. ..+++|+||++++||++||+|||||||||++++|+|+++|++|++
T Consensus 340 ~~i~~~~v~~~y~~~~-------------~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i 400 (582)
T 3b60_A 340 GDLEFRNVTFTYPGRE-------------VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 400 (582)
T ss_dssp CCEEEEEEEECSSSSS-------------CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEE
T ss_pred CcEEEEEEEEEcCCCC-------------CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeE
Confidence 4599999999995320 158999999999999999999999999999999999999999986
No 40
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.21 E-value=2.9e-12 Score=137.51 Aligned_cols=60 Identities=23% Similarity=0.365 Sum_probs=55.0
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++|+++.|++. ..+++|+||++++||++|++|||||||||++++|+|+++|++|++
T Consensus 353 ~~i~~~~v~~~y~~~--------------~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 412 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKK--------------KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412 (598)
T ss_dssp CCEEEEEEECCSSSS--------------SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEE
T ss_pred CeEEEEEEEEECCCC--------------CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEE
Confidence 469999999999532 158999999999999999999999999999999999999999986
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.21 E-value=8e-12 Score=133.72 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=55.9
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+..++++|+++.|++.. ..+++|+||++++||+++++|+|||||||++++|.|+++|++|++
T Consensus 339 ~~~i~~~~v~~~y~~~~-------------~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i 400 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENT-------------DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV 400 (587)
T ss_dssp CCCEEEEEEEECSSSSS-------------CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEE
T ss_pred CCcEEEEEEEEEcCCCC-------------CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEE
Confidence 34699999999996431 258999999999999999999999999999999999999999986
No 42
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.20 E-value=9e-12 Score=133.68 Aligned_cols=60 Identities=20% Similarity=0.397 Sum_probs=54.5
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
++++|+++.|+++. ...+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus 342 i~~~~v~~~y~~~~------------~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i 401 (595)
T 2yl4_A 342 LEFKNVHFAYPARP------------EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 401 (595)
T ss_dssp EEEEEEEEECSSCT------------TSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEE
T ss_pred EEEEEEEEEeCCCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEE
Confidence 99999999996421 1258999999999999999999999999999999999999999986
No 43
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.16 E-value=3.7e-11 Score=128.50 Aligned_cols=60 Identities=30% Similarity=0.410 Sum_probs=54.6
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
+..+++++++|.|++ ..+++++|++++||++||+|+|||||||++++|+|+.+|++|++.
T Consensus 355 ~~~l~~~~l~~~~~~----------------~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~ 414 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGS----------------FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE 414 (607)
T ss_dssp CEEEEECCEEEECSS----------------CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCC
T ss_pred ceEEEEeceEEEecc----------------eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 467999999999943 358999999999999999999999999999999999999999873
No 44
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.15 E-value=4.3e-11 Score=126.50 Aligned_cols=60 Identities=30% Similarity=0.394 Sum_probs=54.7
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
+..+++++++|.|++ ..+++++|++++||++||+|+|||||||++++|+|+.+|++|++.
T Consensus 285 ~~~l~~~~l~~~~~~----------------~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~ 344 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS----------------FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIE 344 (538)
T ss_dssp CEEEEECCEEEEETT----------------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCC
T ss_pred CeEEEEeeEEEEECC----------------EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 467999999999942 358999999999999999999999999999999999999999873
No 45
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.15 E-value=4e-11 Score=126.55 Aligned_cols=59 Identities=22% Similarity=0.300 Sum_probs=53.8
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+..+++++++|.|++ ..++..+|++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus 267 ~~~l~~~~l~~~~~~----------------~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 325 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGD----------------FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSV 325 (538)
T ss_dssp CEEEEECCEEEEETT----------------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCE
T ss_pred cceEEEcceEEEECC----------------EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 567999999999953 35777899999999999999999999999999999999999986
No 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.15 E-value=2e-11 Score=129.01 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=48.4
Q ss_pred eEEE-ecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 406 AVQI-RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 406 ~i~i-~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+..+ +||+|.|++. ..+++++| .+++||++||+|+|||||||++++|+|+++|++|++
T Consensus 20 ~~~~~~~ls~~yg~~--------------~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~ 78 (538)
T 1yqt_A 20 MEQLEEDCVHRYGVN--------------AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGD 78 (538)
T ss_dssp ----CCCEEEECSTT--------------CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred ChhHhcCcEEEECCc--------------cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 3444 5899999532 14899999 999999999999999999999999999999999973
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.14 E-value=2.3e-11 Score=130.03 Aligned_cols=58 Identities=24% Similarity=0.328 Sum_probs=51.1
Q ss_pred eEEE--------ecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 406 AVQI--------RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 406 ~i~i--------~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
.+++ +||+|.|++. ..+++++| .+++||++||+|+|||||||++++|+|+++|++|+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~--------------~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN--------------AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT--------------CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred eEEEecCCccccCCeEEEECCC--------------CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 5888 7888888431 14899999 99999999999999999999999999999999997
Q ss_pred c
Q 011717 478 G 478 (479)
Q Consensus 478 a 478 (479)
+
T Consensus 148 ~ 148 (607)
T 3bk7_A 148 D 148 (607)
T ss_dssp T
T ss_pred c
Confidence 3
No 48
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.01 E-value=1.8e-10 Score=123.01 Aligned_cols=43 Identities=28% Similarity=0.346 Sum_probs=39.4
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++++++ .+++||++||+|||||||||++++|+|+++|++|++
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 3677777 589999999999999999999999999999999986
No 49
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.00 E-value=2.4e-10 Score=132.31 Aligned_cols=62 Identities=21% Similarity=0.403 Sum_probs=55.9
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++|+++.|++.. +..+++|+||++++||++||+|+|||||||++++|.|+++|++|++
T Consensus 386 g~i~~~~v~~~y~~~~------------~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i 447 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRK------------EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447 (1284)
T ss_dssp CCEEEEEEEECCSSTT------------SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEE
T ss_pred CeEEEEEEEEEcCCCC------------CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 4699999999996431 2369999999999999999999999999999999999999999986
No 50
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.00 E-value=2.9e-11 Score=120.71 Aligned_cols=59 Identities=17% Similarity=0.110 Sum_probs=52.7
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..+++++++|.|+.+ +.|+|++ |.+.+||++||+|+|||||||++++|+|+..|+.|.+
T Consensus 44 ~~i~~~~l~~~~~tg--------------~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i 102 (347)
T 2obl_A 44 DPLLRQVIDQPFILG--------------VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVL 102 (347)
T ss_dssp CSTTCCCCCSEECCS--------------CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEE
T ss_pred CCeeecccceecCCC--------------CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEE
Confidence 468889999999532 2599999 9999999999999999999999999999999998854
No 51
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.94 E-value=4.1e-10 Score=130.40 Aligned_cols=62 Identities=27% Similarity=0.467 Sum_probs=55.6
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..++++|+++.|++. +...+++|+||++++||++||+|+|||||||++++|.|+++|++|++
T Consensus 1029 g~i~~~~v~~~y~~~------------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I 1090 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR------------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090 (1284)
T ss_dssp CCEEEEEEEBCCSCG------------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEE
T ss_pred CcEEEEEEEEECCCC------------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence 469999999999642 12258999999999999999999999999999999999999999986
No 52
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.93 E-value=3.1e-10 Score=117.36 Aligned_cols=44 Identities=20% Similarity=0.095 Sum_probs=42.2
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
.|++++||++++ |++||+|||||||||++++|+|+++|++|++.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~ 61 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLN 61 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEE
Confidence 589999999999 99999999999999999999999999999874
No 53
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.86 E-value=2.4e-10 Score=116.32 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=43.2
Q ss_pred ceeeeeEEEEeCCc--------------------EEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717 435 HAIKGLWVNIAKDQ--------------------LFCLLGPNGAGKTTTISCLTGITPVTGGDGC 479 (479)
Q Consensus 435 ~AV~~lsl~v~~ge--------------------i~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~ 479 (479)
.+++++|+++++|| ++||+|+|||||||++|+|+|+.+|++|++.
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~ 101 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAK 101 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCC
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEE
Confidence 69999999999999 9999999999999999999999999999863
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.85 E-value=2.7e-09 Score=118.47 Aligned_cols=51 Identities=14% Similarity=0.298 Sum_probs=45.3
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
...+...+++|.|++. .+++|+||++++||++||+|+|||||||++++|+|
T Consensus 433 ~~~L~~~~ls~~yg~~---------------~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 433 GEDLCNCEFSLAYGAK---------------ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp SCEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred cceeEEeeEEEEECCE---------------EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3467778999999532 59999999999999999999999999999999984
No 55
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.85 E-value=1.9e-09 Score=125.19 Aligned_cols=62 Identities=26% Similarity=0.464 Sum_probs=56.0
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..|+++|++..|+++ ++..+++|+||+|++||.+|+.|++||||||+++.|.|+++|++|++
T Consensus 1075 g~I~f~nVsf~Y~~~------------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I 1136 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPER------------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI 1136 (1321)
T ss_dssp CCEEEEEEEECCTTS------------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEE
T ss_pred CeEEEEEEEEeCCCC------------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEE
Confidence 469999999999643 22358999999999999999999999999999999999999999986
No 56
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.82 E-value=1.6e-09 Score=115.75 Aligned_cols=43 Identities=28% Similarity=0.516 Sum_probs=40.8
Q ss_pred ceeeeeEEEEeCC-----cEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 435 HAIKGLWVNIAKD-----QLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 435 ~AV~~lsl~v~~g-----ei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
.+++++||++.+| |++||+|+|||||||++++|+|+.+|++|+
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~ 408 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ 408 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 4789999999999 889999999999999999999999999996
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.80 E-value=1.8e-09 Score=117.47 Aligned_cols=43 Identities=26% Similarity=0.395 Sum_probs=32.8
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHH---------------------HHHhCCCCCCCcc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI---------------------SCLTGITPVTGGD 477 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~---------------------~mLtG~~~pTsG~ 477 (479)
+|++|+||+|++||++||+|||||||||++ +++.|+..|+.|.
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~ 95 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDA 95 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSE
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccc
Confidence 699999999999999999999999999998 8999999998654
No 58
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.79 E-value=3e-10 Score=116.79 Aligned_cols=59 Identities=17% Similarity=0.189 Sum_probs=52.6
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..+++++++|.|+.+ +.|+|++ |.+.+||+++|+|+|||||||++++|+|+.+|++|.+
T Consensus 130 ~~l~~~~v~~~~~tg--------------~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i 188 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG--------------VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV 188 (438)
T ss_dssp CTTTSCCCCSBCCCS--------------CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEE
T ss_pred CceEEeccceecCCC--------------ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEE
Confidence 457889999999532 2599999 9999999999999999999999999999999999864
No 59
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.79 E-value=7.2e-11 Score=115.36 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=47.6
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
|++++|++.|+ . .+++++||++++||+++|+|||||||||++++|.|++ +|++
T Consensus 102 i~~~~vs~~y~-~---------------~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I 154 (305)
T 2v9p_A 102 FNYQNIELITF-I---------------NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV 154 (305)
T ss_dssp HHHTTCCHHHH-H---------------HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE
T ss_pred EEEEEEEEEcC-h---------------hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE
Confidence 67788998884 1 5899999999999999999999999999999999988 7765
No 60
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.74 E-value=1e-09 Score=107.40 Aligned_cols=43 Identities=26% Similarity=0.332 Sum_probs=40.4
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++.++|.+++||+++|+|+||||||||+++|+|+++|++|++
T Consensus 89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V 131 (302)
T 3b9q_A 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV 131 (302)
T ss_dssp CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 5678899999999999999999999999999999999999986
No 61
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.74 E-value=8.6e-09 Score=119.71 Aligned_cols=62 Identities=24% Similarity=0.381 Sum_probs=56.1
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
..|+++|++..|++. ++..+++|+||++++||.+++.|++||||||+++.|.|+++|++|++
T Consensus 414 g~I~~~nvsF~Y~~~------------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I 475 (1321)
T 4f4c_A 414 GDITVENVHFTYPSR------------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI 475 (1321)
T ss_dssp CCEEEEEEEECCSSS------------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEE
T ss_pred CcEEEEEeeeeCCCC------------CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcc
Confidence 469999999999643 22368999999999999999999999999999999999999999986
No 62
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.72 E-value=2e-10 Score=112.97 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=51.5
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEE-------------------eCCcEEEEECCCCCcHHHHHH
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNI-------------------AKDQLFCLLGPNGAGKTTTIS 465 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v-------------------~~gei~~LLG~NGAGKTTt~~ 465 (479)
..+++++|+|.|. .+++++++.+ .+|+++||+|+|||||||+++
T Consensus 36 ~~i~~~~v~~~y~-----------------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~ 98 (308)
T 1sq5_A 36 EDLSLEEVAEIYL-----------------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTAR 98 (308)
T ss_dssp TTCCHHHHHHTHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHH
T ss_pred cccchHhHHHHHH-----------------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHH
Confidence 3588999999992 4789999887 999999999999999999999
Q ss_pred HHhCCCC--CCCccc
Q 011717 466 CLTGITP--VTGGDG 478 (479)
Q Consensus 466 mLtG~~~--pTsG~a 478 (479)
+|+|++. |++|++
T Consensus 99 ~L~~~l~~~~~~G~i 113 (308)
T 1sq5_A 99 VLQALLSRWPEHRRV 113 (308)
T ss_dssp HHHHHHTTSTTCCCE
T ss_pred HHHHHHhhCCCCCeE
Confidence 9999988 999986
No 63
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.68 E-value=4e-10 Score=110.84 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=47.0
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEE-----------------------EeCCcEEEEECCCCCcH
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVN-----------------------IAKDQLFCLLGPNGAGK 460 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~-----------------------v~~gei~~LLG~NGAGK 460 (479)
+..|.+++|+|.|. .+++++++. +++|+++||+|+|||||
T Consensus 41 ~~~i~~~~v~~~y~-----------------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGK 103 (312)
T 3aez_A 41 GEQIDLLEVEEVYL-----------------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGK 103 (312)
T ss_dssp TCCCCHHHHHHTHH-----------------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCH
T ss_pred CCeEEeeehhhhhh-----------------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchH
Confidence 45689999999993 234444432 89999999999999999
Q ss_pred HHHHHHHhCCCCCCCc
Q 011717 461 TTTISCLTGITPVTGG 476 (479)
Q Consensus 461 TTt~~mLtG~~~pTsG 476 (479)
||++++|+|+++|++|
T Consensus 104 STL~~~L~gll~~~~G 119 (312)
T 3aez_A 104 STTARVLQALLARWDH 119 (312)
T ss_dssp HHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHhhccccCC
Confidence 9999999999999877
No 64
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.68 E-value=2e-10 Score=114.42 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=50.7
Q ss_pred EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++++++|.|++ ..+++++++.+.+|++++|+|+|||||||++++|+|++.|++|++
T Consensus 30 ie~~~~~~~~~~---------------~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v 86 (337)
T 2qm8_A 30 AESRRADHRAAV---------------RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV 86 (337)
T ss_dssp HTCSSHHHHHHH---------------HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred HeeCCcccccCh---------------HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEE
Confidence 667788888842 158999999999999999999999999999999999999999875
No 65
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.68 E-value=1.3e-09 Score=115.13 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=42.4
Q ss_pred ceeeeeEE-EEeCCcEEEEECCCCCcHHHHHHH--HhCCCCCCCcccC
Q 011717 435 HAIKGLWV-NIAKDQLFCLLGPNGAGKTTTISC--LTGITPVTGGDGC 479 (479)
Q Consensus 435 ~AV~~lsl-~v~~gei~~LLG~NGAGKTTt~~m--LtG~~~pTsG~a~ 479 (479)
.|+|++++ ++++||+++|+|+|||||||++++ ++|+.+|++|.+|
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~ 73 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF 73 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEE
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 59999999 999999999999999999999999 7899999999764
No 66
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.60 E-value=4.2e-09 Score=105.21 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=38.8
Q ss_pred eeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 437 V~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
++.++|.+++|++++|+|+||||||||+++|+|+++|++|++
T Consensus 147 ~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V 188 (359)
T 2og2_A 147 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV 188 (359)
T ss_dssp -CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEE
Confidence 357889999999999999999999999999999999999976
No 67
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.56 E-value=3.8e-09 Score=104.80 Aligned_cols=43 Identities=28% Similarity=0.264 Sum_probs=41.6
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++++++.+++|++++++|+|||||||++++|+|+++|++|.+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i 202 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERII 202 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEE
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEE
Confidence 7899999999999999999999999999999999999999975
No 68
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.55 E-value=7.8e-09 Score=106.60 Aligned_cols=42 Identities=31% Similarity=0.257 Sum_probs=39.7
Q ss_pred eeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 437 V~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+++||.+.+|++++|+|+||||||||+++|+|+++|++|++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V 324 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSV 324 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeE
Confidence 578899999999999999999999999999999999999986
No 69
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.52 E-value=4.5e-09 Score=108.66 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=46.1
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc-c
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-D 477 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG-~ 477 (479)
..++++||+|.| +++||.+++||+++|+|+|||||||++++|+|+.+|++| +
T Consensus 117 ~mi~~~nl~~~y---------------------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~ 169 (460)
T 2npi_A 117 TMKYIYNLHFML---------------------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQ 169 (460)
T ss_dssp THHHHHHHHHHH---------------------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCC
T ss_pred chhhhhhhhehh---------------------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCce
Confidence 346777888777 168899999999999999999999999999999999999 7
No 70
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.52 E-value=9.4e-09 Score=103.26 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=40.8
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
++++++|.+++|++++++|+|||||||++++|.|+++|++|.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I 206 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLI 206 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEE
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEE
Confidence 3499999999999999999999999999999999999999975
No 71
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.48 E-value=1.2e-08 Score=103.70 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=39.6
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcE--EEEECCCCCcHHHHHHHHhCCC
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQL--FCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei--~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
..+++++ +|.|++. . ++++||.+++|++ +||+|+|||||||++++|+|+.
T Consensus 15 ~~l~~~~-~~~y~~~---------------~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 15 RTVPLAG-HVGFDSL---------------P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp --CCCCC-CC-CC-----------------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred ceEEEee-EEEECCe---------------e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 3466666 7778421 4 9999999999999 9999999999999999999974
No 72
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.45 E-value=9.4e-08 Score=97.46 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=39.2
Q ss_pred ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (479)
Q Consensus 405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG 476 (479)
..+.+++|+|.|++. .|++|++|.| +|+|+|||||||++++|+|...|+.|
T Consensus 10 ~~l~~~~l~~~y~~~---------------~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~ 60 (418)
T 2qag_C 10 GYVGFANLPNQVYRK---------------SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE 60 (418)
T ss_dssp -----CCCCCCTTTT---------------TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred CcEEEEecceeECCE---------------EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC
Confidence 358899999999532 5899999998 99999999999999999998875443
No 73
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.43 E-value=1.7e-08 Score=105.67 Aligned_cols=44 Identities=23% Similarity=0.344 Sum_probs=42.0
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+++++++.+++|++++++|+||||||||+++|+|+++|++|.+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~gii 291 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVV 291 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEE
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEE
Confidence 58999999999999999999999999999999999999999864
No 74
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.39 E-value=2.3e-08 Score=97.47 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=40.4
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG 476 (479)
.+++++++++++||+++|+|+|||||||++++|+|...|++|
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G 64 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG 64 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence 589999999999999999999999999999999999999877
No 75
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.37 E-value=5.7e-08 Score=91.68 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=32.8
Q ss_pred eeeeeEE--EEeCCcEEEEECCCCCcHHHHHHHHh--CCCCCCCcc
Q 011717 436 AIKGLWV--NIAKDQLFCLLGPNGAGKTTTISCLT--GITPVTGGD 477 (479)
Q Consensus 436 AV~~lsl--~v~~gei~~LLG~NGAGKTTt~~mLt--G~~~pTsG~ 477 (479)
++|++ + ++++||+++|+|||||||||++++|+ |..++++|.
T Consensus 18 ~lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~ 62 (251)
T 2ehv_A 18 GFDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPG 62 (251)
T ss_dssp TTGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCE
T ss_pred hHHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeE
Confidence 34444 3 89999999999999999999999999 664555543
No 76
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.35 E-value=1.2e-07 Score=103.00 Aligned_cols=34 Identities=26% Similarity=0.468 Sum_probs=32.0
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
.||+|+||+|++||+++|+|||||||||++++|.
T Consensus 336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 5899999999999999999999999999998754
No 77
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.31 E-value=1.1e-07 Score=94.02 Aligned_cols=35 Identities=34% Similarity=0.354 Sum_probs=33.0
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 444 v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.++|++++|+|+||||||||+++|+|.++|++|++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V 160 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSV 160 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEE
Confidence 46899999999999999999999999999999976
No 78
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.29 E-value=3.4e-07 Score=89.50 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=30.7
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 442 l~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+.+.+|++.+|+|+|||||||++++|+|+.+|++|++
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i 200 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 200 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccce
Confidence 3456799999999999999999999999999999976
No 79
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.29 E-value=1.6e-07 Score=91.78 Aligned_cols=33 Identities=36% Similarity=0.425 Sum_probs=31.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+||+++++|+||||||||+++|+|+++|++|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V 133 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKV 133 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEE
Confidence 689999999999999999999999999999976
No 80
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.28 E-value=5.4e-08 Score=97.88 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=38.9
Q ss_pred eeeeEEEEeC--CcEEEEECCCCCcHHHHHHHHhCCCCCCC----ccc
Q 011717 437 IKGLWVNIAK--DQLFCLLGPNGAGKTTTISCLTGITPVTG----GDG 478 (479)
Q Consensus 437 V~~lsl~v~~--gei~~LLG~NGAGKTTt~~mLtG~~~pTs----G~a 478 (479)
.+.+++.|++ |+.++|+|+|||||||++++|+|+++|++ |++
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i 205 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGRE 205 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHH
Confidence 4679999999 99999999999999999999999999999 754
No 81
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.26 E-value=4.9e-07 Score=90.03 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=35.8
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-CCCccc
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-VTGGDG 478 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-pTsG~a 478 (479)
.+++|++. .+|++++|+|+|||||||++|+|+|+.+ |++|++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I 247 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDV 247 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC--
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCc
Confidence 46666664 5899999999999999999999999999 999975
No 82
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.22 E-value=5.6e-07 Score=98.97 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=40.3
Q ss_pred CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHH-HhCC
Q 011717 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC-LTGI 470 (479)
Q Consensus 404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~m-LtG~ 470 (479)
+..++++++++ .+++|+||+|++||++|++|+|||||||++++ |+|.
T Consensus 500 ~~~L~v~~l~~--------------------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~ 547 (842)
T 2vf7_A 500 AGWLELNGVTR--------------------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDA 547 (842)
T ss_dssp SCEEEEEEEEE--------------------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHH
T ss_pred CceEEEEeeee--------------------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHH
Confidence 45688888753 26999999999999999999999999999997 7743
No 83
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.21 E-value=2e-07 Score=95.21 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=35.8
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT 474 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT 474 (479)
.++++++|.+.+| +.+|+|+|||||||++++|.|+..+.
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~ 87 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGR 87 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCC
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4799999999999 99999999999999999998877654
No 84
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.19 E-value=1.4e-07 Score=92.22 Aligned_cols=37 Identities=14% Similarity=0.259 Sum_probs=26.1
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 442 l~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+.+.+|++++|+|+|||||||++|+|+|+.+|++|++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I 204 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI 204 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccce
Confidence 4566899999999999999999999999999999976
No 85
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.17 E-value=7.7e-07 Score=100.26 Aligned_cols=53 Identities=23% Similarity=0.380 Sum_probs=40.5
Q ss_pred ceEEEec-----ceEEcCCCCccccccccCCCCCcceeeeeEEEEeC-------CcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 405 VAVQIRG-----LVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAK-------DQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 405 ~~i~i~~-----l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~-------gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
..+++++ |.|.|.+. ..+++|++|++.+ |++++|+|||||||||+++++ |+..
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~--------------~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD--------------DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEEECCCC------CC--------------CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred ceEEEEeccccEEEEEecCC--------------ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence 4589999 88888322 1589999999987 999999999999999999999 8754
No 86
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.17 E-value=1e-06 Score=86.08 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=32.4
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 443 ~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+.+|++.+|+|+|||||||++|+|+ +.+|++|++
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i 195 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEV 195 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCccccc
Confidence 44579999999999999999999999 999999986
No 87
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.13 E-value=1.6e-07 Score=89.27 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=34.1
Q ss_pred ceEEEecc-eEEcCCCCccccccccCCCCCcceeeeeEEEEeC---CcEEEEECCCCCcHHHHHHHHhC
Q 011717 405 VAVQIRGL-VKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAK---DQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 405 ~~i~i~~l-~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~---gei~~LLG~NGAGKTTt~~mLtG 469 (479)
..++++|| +|.|++. ..+++++||.+.+ |++++|+|++||||||+.++|.+
T Consensus 16 ~~l~~~~~~~~~~~~~--------------~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEE--------------QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp ------------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred CceEEcceeeEEecCc--------------chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999 9999322 1699999999999 99999999999999999999987
No 88
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.05 E-value=1e-06 Score=89.83 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=37.7
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+++++ + ..+|++++++||||||||||++.|.|+++|++|++
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I 198 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNI 198 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCE
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEE
Confidence 367777 4 48999999999999999999999999999999976
No 89
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.05 E-value=3.1e-07 Score=92.45 Aligned_cols=41 Identities=29% Similarity=0.331 Sum_probs=36.4
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-Cccc
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-GGDG 478 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT-sG~a 478 (479)
++++++ +++|++++++|+||||||||++.|.|+++|+ +|++
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I 168 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHI 168 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEE
Confidence 456655 7899999999999999999999999999998 8875
No 90
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.04 E-value=1.8e-06 Score=96.10 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=37.8
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHH--------hCCCCCCCc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL--------TGITPVTGG 476 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mL--------tG~~~pTsG 476 (479)
.+.+|++|++.+|++++|+|||||||||+++++ .|.+-|.++
T Consensus 650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~ 699 (934)
T 3thx_A 650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES 699 (934)
T ss_dssp CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE
T ss_pred eecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc
Confidence 578999999999999999999999999999999 887766543
No 91
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.01 E-value=1.3e-06 Score=95.45 Aligned_cols=40 Identities=28% Similarity=0.296 Sum_probs=36.3
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-CCCcc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-VTGGD 477 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-pTsG~ 477 (479)
.+++|++|+ |++++|+|||||||||++++|+|+.. +..|.
T Consensus 567 ~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~ 607 (765)
T 1ewq_A 567 FVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGS 607 (765)
T ss_dssp CCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTC
T ss_pred eEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCc
Confidence 689999999 99999999999999999999999863 67775
No 92
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.00 E-value=1.6e-06 Score=96.26 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=33.2
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
.+.+|++|++++|++++|+|||||||||+++++.|
T Consensus 661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred eecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 58999999999999999999999999999999874
No 93
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.99 E-value=2e-06 Score=87.55 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=33.3
Q ss_pred eeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 437 V~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
-++++|.++.|++++|+|+|||||||++++|+|..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 57999999999999999999999999999999984
No 94
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.97 E-value=3.2e-06 Score=92.97 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=33.5
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.+++|++|+ ++|++++|+|||||||||++++|+|+
T Consensus 596 ~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 596 FIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 589999999 99999999999999999999999986
No 95
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.90 E-value=7.9e-07 Score=88.82 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=31.8
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-Ccc
Q 011717 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-GGD 477 (479)
Q Consensus 443 ~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT-sG~ 477 (479)
.+.+|++++++|+||||||||+++|.|+++|+ +|.
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~ 154 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHH 154 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCE
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcE
Confidence 67899999999999999999999999999987 443
No 96
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.89 E-value=9e-06 Score=90.21 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=34.1
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHH---------HHHhCCCCCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI---------SCLTGITPVT 474 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~---------~mLtG~~~pT 474 (479)
.+++|+||++++||++|++|+|||||||++ +++.|...++
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~ 646 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPA 646 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCC
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccc
Confidence 479999999999999999999999999997 5666654443
No 97
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.89 E-value=1.4e-07 Score=93.71 Aligned_cols=44 Identities=30% Similarity=0.332 Sum_probs=39.3
Q ss_pred ceeeeeEEEEeCC-------cEEEEECCCCCcHHHHHHHHhCCC----CCCCccc
Q 011717 435 HAIKGLWVNIAKD-------QLFCLLGPNGAGKTTTISCLTGIT----PVTGGDG 478 (479)
Q Consensus 435 ~AV~~lsl~v~~g-------ei~~LLG~NGAGKTTt~~mLtG~~----~pTsG~a 478 (479)
.+++++++.+.+| +.++|.||||+||||++++|+|.. .+++|.+
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~ 86 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPV 86 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTT
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechH
Confidence 5789999999876 899999999999999999999987 7788865
No 98
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.87 E-value=3.1e-06 Score=90.66 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=25.7
Q ss_pred EEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-CCcccC
Q 011717 441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-TGGDGC 479 (479)
Q Consensus 441 sl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-TsG~a~ 479 (479)
+++++. +|++|+|||||||++++|+|+..| ++|++.
T Consensus 42 ~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt 78 (608)
T 3szr_A 42 DLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVT 78 (608)
T ss_dssp SCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CC
T ss_pred cccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEE
Confidence 355554 999999999999999999999988 799863
No 99
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.84 E-value=1.3e-06 Score=78.37 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=30.3
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (479)
Q Consensus 443 ~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG 476 (479)
.+.+|++++|.|+||+||||+++.|+|...|++|
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 3457899999999999999999999998877777
No 100
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.80 E-value=6.7e-06 Score=91.25 Aligned_cols=32 Identities=25% Similarity=0.453 Sum_probs=30.9
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHH
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mL 467 (479)
+++|+||+|++||++|++|+|||||||++++|
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTT
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHH
Confidence 69999999999999999999999999999985
No 101
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.80 E-value=5.7e-06 Score=91.52 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=31.3
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
+++|+||+|++||++|++|+|||||||++++|.
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 699999999999999999999999999999853
No 102
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.76 E-value=3.3e-06 Score=83.14 Aligned_cols=41 Identities=24% Similarity=0.309 Sum_probs=37.9
Q ss_pred eeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 438 ~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
++++|.+.+|++++++|+||+|||||...|+|.+.+++|++
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kV 136 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKV 136 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 68888899999999999999999999999999998887765
No 103
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.69 E-value=4.6e-06 Score=72.59 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=31.4
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG 476 (479)
.+++++ +|++++|.|+||+||||++++|.|...+ +|
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g 64 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AG 64 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TT
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cC
Confidence 466666 8999999999999999999999998776 45
No 104
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.68 E-value=1.6e-05 Score=72.43 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=23.7
Q ss_pred eeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 437 V~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
+-+..+..++|++++|+|+|||||||+.++|+|.
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4444466778999999999999999999999864
No 105
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.67 E-value=5.2e-06 Score=83.42 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=34.5
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.+++++++++++|++++|.||||+||||++++|+|.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 589999999999999999999999999999999984
No 106
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.64 E-value=3.2e-06 Score=84.04 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=38.0
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
.+++++++.+.+|++++++|+|||||||+++.|+|.+.+++|+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~ 86 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLK 86 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCe
Confidence 5788999999999999999999999999999999877665554
No 107
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.63 E-value=7.5e-06 Score=79.97 Aligned_cols=39 Identities=28% Similarity=0.277 Sum_probs=34.5
Q ss_pred eEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 440 LWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 440 lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++...+|++++++|+||+|||||+..|+|.+++++|++
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV 135 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSV 135 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEE
Confidence 455567899999999999999999999999998887765
No 108
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.63 E-value=7.5e-06 Score=81.58 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=36.8
Q ss_pred ceeeee-EEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CCCC
Q 011717 435 HAIKGL-WVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTG 475 (479)
Q Consensus 435 ~AV~~l-sl~v~~gei~~LLG~NGAGKTTt~~mLtG~~--~pTs 475 (479)
..+|.+ ..++++|++++|.|+||+||||+++.|+|.. +|++
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~ 161 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 161 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGG
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhc
Confidence 467776 6899999999999999999999999999987 7776
No 109
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.60 E-value=4.8e-06 Score=81.78 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=36.4
Q ss_pred ceeeeeEEEEeCCc------EEEEECCCCCcHHHHHHHHhCCCC--CCCcc
Q 011717 435 HAIKGLWVNIAKDQ------LFCLLGPNGAGKTTTISCLTGITP--VTGGD 477 (479)
Q Consensus 435 ~AV~~lsl~v~~ge------i~~LLG~NGAGKTTt~~mLtG~~~--pTsG~ 477 (479)
.++++++..+.+++ ++||.|+|||||||+.++|.|++. |++|.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~ 124 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN 124 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe
Confidence 46777777777776 999999999999999999999877 56665
No 110
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.59 E-value=1.2e-05 Score=78.26 Aligned_cols=32 Identities=34% Similarity=0.533 Sum_probs=29.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG 476 (479)
.+|++++++|+||+|||||+..|+|.+.+++|
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G 134 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH 134 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999999988777
No 111
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.59 E-value=7.5e-06 Score=78.77 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=34.1
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV 473 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p 473 (479)
.+++++++.+++| ++|.||||+||||++++|+|...+
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC
Confidence 4789999999999 999999999999999999998765
No 112
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.51 E-value=1.6e-05 Score=77.35 Aligned_cols=39 Identities=28% Similarity=0.296 Sum_probs=35.4
Q ss_pred eeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 438 ~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
++++|. +|+++++.|+||+||||+...|+|.+++.+|++
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v 129 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRP 129 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCE
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 677777 999999999999999999999999998887765
No 113
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.48 E-value=1.6e-05 Score=83.75 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=31.9
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (479)
Q Consensus 443 ~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG 476 (479)
.+++|++++|+|+|||||||+.++|+|.+.|++|
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G 398 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGG 398 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence 4689999999999999999999999999999887
No 114
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.37 E-value=3.9e-05 Score=76.37 Aligned_cols=33 Identities=30% Similarity=0.359 Sum_probs=28.0
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
.++.+++|+|++||||||+++.|+|...+++|+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~ 104 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHK 104 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCe
Confidence 356899999999999999999999976666554
No 115
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.33 E-value=6.3e-05 Score=67.78 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGITPV 473 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~~p 473 (479)
.++|+|+|||||||+++.|+|...+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999997654
No 116
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.23 E-value=5.1e-05 Score=79.85 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=31.6
Q ss_pred EEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717 441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT 474 (479)
Q Consensus 441 sl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT 474 (479)
+.++++|++++|.|+||+||||++++++|..+|+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~ 308 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN 308 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 3489999999999999999999999999998886
No 117
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.20 E-value=4.4e-05 Score=72.18 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=32.9
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
.+++++++.+++| +.|.|+||+||||++++|+|...
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999 89999999999999999999764
No 118
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.19 E-value=0.0002 Score=62.11 Aligned_cols=29 Identities=21% Similarity=0.459 Sum_probs=23.3
Q ss_pred eeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717 439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 439 ~lsl~v~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
+.++...+ .++++.|+|||||||++..|.
T Consensus 16 ~~~i~f~~-g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCC-CeEEEECCCCCCHHHHHHHHH
Confidence 34455544 599999999999999999886
No 119
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.14 E-value=5.4e-05 Score=72.67 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=33.0
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
.+++++++.+++| +.|.|+||+||||++++|+|...
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence 4789999999999 89999999999999999999764
No 120
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.07 E-value=0.00023 Score=68.25 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=27.3
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 443 ~v~~gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
++++|++++|.|+||+||||+...|+|...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 588999999999999999999999998544
No 121
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.96 E-value=0.00032 Score=70.91 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=32.9
Q ss_pred eeeeeE-EEEeCCcEEEEECCCCCcHHHHHH--HHhCCCCCCCc
Q 011717 436 AIKGLW-VNIAKDQLFCLLGPNGAGKTTTIS--CLTGITPVTGG 476 (479)
Q Consensus 436 AV~~ls-l~v~~gei~~LLG~NGAGKTTt~~--mLtG~~~pTsG 476 (479)
.+|.+- =++++|+++.|.|+||+||||+.. ++.+..+++.|
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~G 209 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG 209 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccC
Confidence 455432 389999999999999999999999 45688877555
No 122
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.94 E-value=0.00037 Score=69.46 Aligned_cols=41 Identities=22% Similarity=0.514 Sum_probs=31.7
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC--CCCCCCccc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG--ITPVTGGDG 478 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG--~~~pTsG~a 478 (479)
.|++++++.++ .++++|++||||||+++.|+| .+++.+|.+
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v 67 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence 58999999998 899999999999999999999 556666643
No 123
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.92 E-value=0.00019 Score=73.03 Aligned_cols=39 Identities=28% Similarity=0.296 Sum_probs=34.9
Q ss_pred eeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 438 ~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++++. +++++++.|+||+||||+...|++.+.+.+|.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~V 129 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRP 129 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 567777 899999999999999999999999998887764
No 124
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.76 E-value=0.00021 Score=74.95 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=31.1
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.++++++.+.+| +.+|+|+|||||||++..|.++
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 578899999999 9999999999999999999665
No 125
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.75 E-value=0.00017 Score=77.09 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=39.3
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG 475 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs 475 (479)
.+++++++.+.+|+.+.|.|+||+||||+.+.|+|+.+++.
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 68999999999999999999999999999999999998877
No 126
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.75 E-value=0.00014 Score=70.59 Aligned_cols=38 Identities=26% Similarity=0.227 Sum_probs=32.6
Q ss_pred eEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 440 LWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 440 lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
+++..+ |+++++.|+||+||||+...|++.+.+.+|++
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v 129 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKV 129 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCE
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 667665 99999999999999999999999887766654
No 127
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.69 E-value=0.00015 Score=76.62 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=37.4
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.|++++++.+ +|+++.|.||||+||||+.+.|++...++.|.+
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i 139 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRI 139 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence 5788888888 899999999999999999999999887766543
No 128
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.69 E-value=0.00024 Score=71.02 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=34.8
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG 475 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs 475 (479)
-+.+.+|.+.|++ +.+.++.++.| +++|++|+||||+++.|.|......
T Consensus 17 ~v~~~~l~~~~~~---------------k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~ 65 (361)
T 2qag_A 17 YVGFANLPNQVHR---------------KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE 65 (361)
T ss_dssp ----CCHHHHHHT---------------HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC---
T ss_pred eEEeccchHHhCC---------------eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCC
Confidence 4777888887742 14688888887 9999999999999999988654433
No 129
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.54 E-value=6.7e-05 Score=74.25 Aligned_cols=41 Identities=27% Similarity=0.373 Sum_probs=36.3
Q ss_pred ceeeeeEEEEeCCcE--EEEECCCCCcHHHHHHHHhCCCCCCC
Q 011717 435 HAIKGLWVNIAKDQL--FCLLGPNGAGKTTTISCLTGITPVTG 475 (479)
Q Consensus 435 ~AV~~lsl~v~~gei--~~LLG~NGAGKTTt~~mLtG~~~pTs 475 (479)
.+++.++..+.+|++ ..|.||+|+||||+.+++++.+.++.
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 588999999999999 99999999999999999998765544
No 130
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.47 E-value=0.00061 Score=67.86 Aligned_cols=51 Identities=20% Similarity=0.250 Sum_probs=43.4
Q ss_pred eEEEecceEEcCCCCccccccccCCCCCcceee--------------eeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIK--------------GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~--------------~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.+..+||+..|+..+ ..++ |+.+.+.+||..+++|++|+||||++++|.+.
T Consensus 133 ri~Fe~ltp~yP~er--------------~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHANSR--------------LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESCCSB--------------CCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCCCCc--------------cccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 467788999997542 3466 89999999999999999999999999999864
No 131
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.45 E-value=0.0018 Score=60.32 Aligned_cols=28 Identities=32% Similarity=0.498 Sum_probs=23.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717 449 LFCLLGPNGAGKTTTISCLTGITPVTGG 476 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~~pTsG 476 (479)
.++|+|++|+||||+++.|+|...+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 3689999999999999999998776665
No 132
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.27 E-value=0.0014 Score=64.78 Aligned_cols=29 Identities=34% Similarity=0.313 Sum_probs=25.7
Q ss_pred EEEECCCCCcHHHHHHHHhC-CCCCCCccc
Q 011717 450 FCLLGPNGAGKTTTISCLTG-ITPVTGGDG 478 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG-~~~pTsG~a 478 (479)
..|.|+||+||||+++.|+| +..|++|++
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i 68 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRL 68 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC-
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeE
Confidence 67899999999999999999 788888754
No 133
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.19 E-value=0.0021 Score=64.14 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
+++|+|+|||||||+++.|+|...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 488999999999999999999876
No 134
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.91 E-value=0.0017 Score=62.67 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=25.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGITPV 473 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~~~p 473 (479)
+++++|+.|++||||||+.+.|.+.+.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4689999999999999999999987764
No 135
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.90 E-value=0.0017 Score=66.10 Aligned_cols=32 Identities=31% Similarity=0.323 Sum_probs=27.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~ 477 (479)
++.++++.|+||+|||||...|++.+.+.++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~k 127 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYK 127 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence 56899999999999999999999776665544
No 136
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.85 E-value=0.0043 Score=63.49 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
.++|+|+||+||||+++.|+|...
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTT
T ss_pred eEEEECCCCCCHHHHHHHHhCCcc
Confidence 689999999999999999999753
No 137
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.79 E-value=0.0019 Score=64.03 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=35.0
Q ss_pred eeeeeEE--EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 436 AIKGLWV--NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 436 AV~~lsl--~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+|.+-= ++++|+++.+.|+||+||||+...+++...+.+|.+
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 4555433 689999999999999999999999998776666654
No 138
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.20 E-value=0.0033 Score=65.30 Aligned_cols=35 Identities=29% Similarity=0.454 Sum_probs=30.9
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
+++++++.+++| +.|.|+||+||||+.+.|+|...
T Consensus 55 ~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 55 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 577788888888 89999999999999999998653
No 139
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.93 E-value=0.0056 Score=60.69 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=28.8
Q ss_pred eeeeeEE--EEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 436 AIKGLWV--NIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 436 AV~~lsl--~v~~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.+|.+-= ++++|+++.+.|+||+||||+...+++..
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4555433 78999999999999999999987777543
No 140
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.85 E-value=0.012 Score=58.40 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.4
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
-.++++|+||+||||+++.|+|...
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~ 192 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKP 192 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4789999999999999999999753
No 141
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.54 E-value=0.0028 Score=65.17 Aligned_cols=42 Identities=10% Similarity=0.118 Sum_probs=36.5
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG 476 (479)
..+|++..++++|+++.+.|++|+||||+...|++...+..|
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g 232 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN 232 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC
Confidence 579999989999999999999999999999998886654434
No 142
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.42 E-value=0.0098 Score=59.75 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=26.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a 478 (479)
.+.-+.++|++||||||+++.|.+...+..+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~ 66 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRV 66 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEE
Confidence 456788999999999999999998766665543
No 143
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.20 E-value=0.018 Score=54.01 Aligned_cols=28 Identities=29% Similarity=0.182 Sum_probs=24.0
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
.++.++.|.|++||||||+.+.|...+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567899999999999999999987553
No 144
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.13 E-value=0.018 Score=53.33 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=21.8
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHh
Q 011717 444 IAKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 444 v~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
+.+|+.+.+.|++|+||||++..+.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 4679999999999999999887664
No 145
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.10 E-value=0.016 Score=54.35 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 011717 450 FCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
+.|.|++|+||||+.+.|.+..
T Consensus 48 vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHc
Confidence 7899999999999999998754
No 146
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.06 E-value=0.016 Score=63.91 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=28.8
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPV 473 (479)
Q Consensus 442 l~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p 473 (479)
|++.+|+.+.|.|++|+||||+.+.|+|....
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46789999999999999999999999998653
No 147
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.84 E-value=0.026 Score=49.96 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.++++|+.|+||||+++.|+|..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 148
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.58 E-value=0.021 Score=58.40 Aligned_cols=35 Identities=29% Similarity=0.283 Sum_probs=30.8
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.|+|.+ ..+-+||..+|.|++|+||||++++|.+.
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 477777 77889999999999999999999998764
No 149
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.22 E-value=0.045 Score=52.48 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
++.++.|.|++||||||+.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999964
No 150
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.14 E-value=0.052 Score=51.30 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.8
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGITPV 473 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~~p 473 (479)
...+++|.+|+||||+++.|+|....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~ 125 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS 125 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc
Confidence 57899999999999999999997653
No 151
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.60 E-value=0.084 Score=49.64 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.++++|+.|+||||+++.|+|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 35899999999999999999954
No 152
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.38 E-value=0.036 Score=53.44 Aligned_cols=29 Identities=21% Similarity=0.364 Sum_probs=24.9
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 443 NIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 443 ~v~~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
++.++..+.|.|++|+||||+.+.|.+..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 34567889999999999999999998754
No 153
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.31 E-value=0.079 Score=47.00 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~ 470 (479)
-++++|+.|+||||+++.|++.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3679999999999999999874
No 154
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=92.26 E-value=0.055 Score=56.11 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=31.9
Q ss_pred eeEEEEeCCcEEEEECCCCCcHHHHHHHHhC--CCCCCCcc
Q 011717 439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTG--ITPVTGGD 477 (479)
Q Consensus 439 ~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG--~~~pTsG~ 477 (479)
-+++++.++.-..+.|.+|+||||+++.|.+ +..++.|+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~ 199 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPED 199 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTT
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCce
Confidence 3678888999999999999999999998765 45555554
No 155
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=92.16 E-value=0.09 Score=57.84 Aligned_cols=30 Identities=30% Similarity=0.612 Sum_probs=28.1
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHH
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~ 464 (479)
+=++|+++++++|+.+++-|+.|+||||+.
T Consensus 24 hNLkni~v~iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 24 HNLKDISVKVPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp TTCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred cCCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence 349999999999999999999999999986
No 156
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.11 E-value=0.07 Score=48.09 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 011717 450 FCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~ 470 (479)
++++|..|+||||+++.+++.
T Consensus 31 i~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999985
No 157
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.02 E-value=0.044 Score=52.67 Aligned_cols=29 Identities=34% Similarity=0.425 Sum_probs=24.7
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGITPVTGG 476 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~~pTsG 476 (479)
..+.|.|++|+||||+.+.|.+...+++|
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~ 76 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEE 76 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCc
Confidence 57889999999999999999987655544
No 158
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.00 E-value=0.066 Score=48.55 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.++++|+.|+||||+++-|++.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 159
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=91.92 E-value=0.045 Score=49.64 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.++++|+.|+||||+++.|+|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999974
No 160
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.86 E-value=0.093 Score=53.36 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=21.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
++.++.+.|++|+|||||..-|+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 457999999999999999999984
No 161
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.68 E-value=0.12 Score=48.86 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.++++|+.|+||||+++.|+|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36799999999999999999854
No 162
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=91.64 E-value=0.031 Score=57.59 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=26.3
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
+.+++++.+++| +.|.||+|+||||+.+.|.|.
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 345555666666 679999999999999999874
No 163
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.30 E-value=0.11 Score=47.51 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.++++|..|+||||+++.|+|..
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999863
No 164
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.19 E-value=0.077 Score=52.49 Aligned_cols=26 Identities=35% Similarity=0.345 Sum_probs=22.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGITPVT 474 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~~pT 474 (479)
++.|.|++|.||||+++.+.+...+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 78999999999999999998876544
No 165
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.03 E-value=0.11 Score=46.86 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 011717 450 FCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~ 470 (479)
++++|+.|+||||+++.|++.
T Consensus 37 i~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 37 VVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 689999999999999999974
No 166
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=90.99 E-value=0.12 Score=57.24 Aligned_cols=30 Identities=33% Similarity=0.590 Sum_probs=27.8
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHH
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~ 464 (479)
+=++|+++++++++.+++-|..|+||||+-
T Consensus 32 hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp SSCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred ccCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence 349999999999999999999999999973
No 167
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=90.96 E-value=0.12 Score=57.42 Aligned_cols=30 Identities=23% Similarity=0.576 Sum_probs=27.9
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHH
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~ 464 (479)
+=++|+++++++++.+++-|..|+||||+-
T Consensus 34 hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 34 HNLRSVDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp SSCCSEEEEEESSSEEEEEESTTSSHHHHH
T ss_pred cccCceeeeccCCCEEEEECCCCCcHHHHH
Confidence 459999999999999999999999999973
No 168
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.90 E-value=0.1 Score=46.42 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
-++++|+.|+||||+++.|++..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 46899999999999999998643
No 169
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=90.84 E-value=0.2 Score=48.55 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=29.9
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
..+++..+.+ .|.-..+.|+.||||||+..-|.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 5788888888 889999999999999999887764
No 170
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=90.83 E-value=0.11 Score=51.06 Aligned_cols=35 Identities=20% Similarity=0.105 Sum_probs=28.6
Q ss_pred eeeeeE-EEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 436 AIKGLW-VNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 436 AV~~ls-l~v~~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.+|.+- =++++|+++.+.|++|+||||+...++..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344432 26899999999999999999999988874
No 171
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.68 E-value=0.15 Score=45.65 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 011717 449 LFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG 469 (479)
.++++|+.|+||||+++.+++
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 367999999999999988874
No 172
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.38 E-value=0.13 Score=45.55 Aligned_cols=21 Identities=33% Similarity=0.335 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 011717 450 FCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~ 470 (479)
++++|+.|+||||+++.+++.
T Consensus 32 i~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 32 ILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEESTTSSHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999863
No 173
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.19 E-value=0.17 Score=46.05 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.++|+|..|+||||+++-++|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999974
No 174
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.86 E-value=0.12 Score=50.81 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
+++.+.|.|++|.||||+++.+.+...
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999987553
No 175
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.65 E-value=0.11 Score=52.93 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.++++.|++|+|||||..-|++.+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999999998743
No 176
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=89.59 E-value=0.22 Score=45.30 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
++..+.|.|+.|+||||+.+.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4578889999999999999988754
No 177
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.42 E-value=0.18 Score=48.97 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=28.3
Q ss_pred eeeeeE-EEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 436 AIKGLW-VNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 436 AV~~ls-l~v~~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.+|.+- =++++|+++.+.|++|+||||+...++..
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 344432 26899999999999999999999888764
No 178
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=89.27 E-value=0.26 Score=47.03 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.7
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
-..+++|..|+||||++|.|+|..
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred ceEEEEecCCCchHHHHHHHhcCc
Confidence 367899999999999999999965
No 179
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=89.25 E-value=0.15 Score=45.45 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 011717 450 FCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~ 470 (479)
++++|+.|+||||+++.|++.
T Consensus 32 i~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 32 LVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhhC
Confidence 679999999999999999864
No 180
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.23 E-value=0.18 Score=49.67 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHHHhCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
-++++.|+.|+||||+++-|++.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999754
No 181
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=89.20 E-value=0.069 Score=58.54 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=25.6
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVT 474 (479)
Q Consensus 444 v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT 474 (479)
+..|+++.+.|+||+||||++.++.+...++
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~ 136 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMP 136 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHCG
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhccc
Confidence 4678999999999999999999887654443
No 182
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.05 E-value=0.21 Score=45.31 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.++++|+.|+||||+++-|++.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999988764
No 183
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=88.99 E-value=0.21 Score=51.67 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=19.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHh
Q 011717 447 DQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLt 468 (479)
..++++.|++|+|||||++-|+
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4588999999999999999998
No 184
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=88.84 E-value=0.27 Score=43.77 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
..+.|.|++|+||||+.+.|.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5677999999999999999886543
No 185
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=87.63 E-value=0.35 Score=44.80 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.2
Q ss_pred cEEEEECCCCCcHHHHHHHHh
Q 011717 448 QLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLt 468 (479)
-+++|.|+-||||||..+.|.
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999986
No 186
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=87.55 E-value=0.28 Score=46.64 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 447 DQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
+..+.|.|++|+||||+.+.+.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4567899999999999999998754
No 187
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=87.30 E-value=0.31 Score=50.91 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 011717 450 FCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
++|+|..|+||||+++.|+|..
T Consensus 44 V~lvG~~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 44 VHLIGDGMAGKTSLLKQLIGET 65 (535)
T ss_dssp EEEESSSCSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5799999999999999999864
No 188
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=87.18 E-value=0.096 Score=57.68 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=28.3
Q ss_pred eEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 440 LWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 440 lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.++++.+++.+.|.||+|.||||+.+.|++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 45677899999999999999999999999754
No 189
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=87.08 E-value=0.35 Score=47.50 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=26.8
Q ss_pred eeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 438 ~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
+.+.+.++.-=-++|+|..+|||||+++.|++..
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~ 182 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAK 182 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEEC
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCC
Confidence 4555665544458999999999999999999753
No 190
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=86.68 E-value=0.35 Score=44.21 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHh
Q 011717 447 DQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLt 468 (479)
.-++.|+|+-||||+|.-+.|+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3578899999999999988886
No 191
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=86.49 E-value=0.13 Score=45.77 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~ 470 (479)
-++++|+.|+||||+++.+++.
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 3679999999999999888763
No 192
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=86.35 E-value=0.16 Score=49.83 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=31.2
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
..+|.+.-++++|+.+.|-|++|+||||+..-++.
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~ 68 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVL 68 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 57888888999999999999999999999877754
No 193
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.33 E-value=0.77 Score=41.31 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=27.2
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
..+.+..+.+ .|..+.+.|+.|+||||+..-|.-
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566666665 578899999999999999887764
No 194
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=86.06 E-value=0.29 Score=50.17 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.++++|+.|+||||+++.|+|.
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4789999999999999999984
No 195
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=85.90 E-value=0.4 Score=48.67 Aligned_cols=23 Identities=30% Similarity=0.729 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
-++++|+.|+||||+++-|+|..
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999964
No 196
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=85.86 E-value=0.4 Score=46.34 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=27.5
Q ss_pred eeeeeE-EEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 436 AIKGLW-VNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 436 AV~~ls-l~v~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
.+|.+- =++++|+++.+.|++|+||||+..-++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344443 2689999999999999999999887764
No 197
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=85.60 E-value=0.43 Score=45.36 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.5
Q ss_pred cEEEEECCCCCcHHHHHHHHh
Q 011717 448 QLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLt 468 (479)
-+++|.|+-||||||..+.|.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999986
No 198
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=85.59 E-value=0.13 Score=45.82 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 011717 450 FCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
++++|+.|+||||+++.|++..
T Consensus 36 i~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 36 LLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5799999999999999998854
No 199
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=85.49 E-value=0.47 Score=46.79 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=28.2
Q ss_pred ceeeeeE--EEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 435 HAIKGLW--VNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 435 ~AV~~ls--l~v~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
..+|.+- =++++|+++.+.|++|+||||+..-++.
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3566652 1589999999999999999999877664
No 200
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=85.44 E-value=0.19 Score=48.70 Aligned_cols=34 Identities=9% Similarity=0.073 Sum_probs=30.5
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
..+|++.-++++|+++.+-|+.|+||||+..-++
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia 89 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQA 89 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 5788888789999999999999999999987665
No 201
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=85.19 E-value=0.43 Score=46.93 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
-++++|.-||||||+++.|+|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999963
No 202
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=85.17 E-value=0.51 Score=47.56 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=21.8
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
.+.+++.|.|+.||||||+.+.|.-
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999864
No 203
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=85.14 E-value=0.5 Score=47.95 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHh
Q 011717 447 DQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLt 468 (479)
..++.+.|++|+|||||..-|+
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3588899999999999998887
No 204
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=84.95 E-value=0.42 Score=50.08 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.++++|+-||||||++|-|+|..
T Consensus 67 ~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 67 MVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68899999999999999999964
No 205
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=84.75 E-value=0.51 Score=46.98 Aligned_cols=33 Identities=33% Similarity=0.438 Sum_probs=27.8
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
|+| +=+.+-+||..++.|+.|+||||++.+|+-
T Consensus 165 aID-~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 165 LID-LFAPIGKGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHH-HHSCCBTTCEEEEEECTTCCHHHHHHHHHH
T ss_pred hhh-hcccccCCceEEEecCCCCChhHHHHHHHH
Confidence 444 346789999999999999999999998864
No 206
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=84.54 E-value=0.41 Score=47.47 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
++...+++|..|+||||++|.|+|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4567899999999999999999986
No 207
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.45 E-value=0.42 Score=46.43 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 011717 450 FCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
..|.|++|+||||+.+.+.+.+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998753
No 208
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=84.39 E-value=0.38 Score=48.90 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 447 DQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
+..+.|.|++|+||||+++.|.+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999998744
No 209
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=84.02 E-value=0.4 Score=49.31 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.++++|+.|+||||+++.|+|.
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999996
No 210
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=83.75 E-value=0.68 Score=41.59 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.+.|.|+.|.||||+.+.+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999988753
No 211
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=83.63 E-value=0.44 Score=46.41 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.++++|+.|+||||+++-|++..
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~ 189 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGE 189 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSC
T ss_pred eEEEECCCCccHHHHHHHHhCCC
Confidence 47899999999999999998753
No 212
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=83.53 E-value=0.56 Score=49.80 Aligned_cols=22 Identities=36% Similarity=0.374 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~ 470 (479)
-++++||.|+||||+++-|++.
T Consensus 169 kV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 169 SFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp EEEEECCSSSCHHHHHHHHHSC
T ss_pred EEEEEECCCCCHHHHHHHHHHh
Confidence 5789999999999999999876
No 213
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=83.42 E-value=0.54 Score=45.34 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=20.4
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
..+.|.|+.|.||||+.+.|.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 456788999999999999998754
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=82.78 E-value=0.45 Score=47.15 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
++...+++|..|+||||++|.|+|.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 5667899999999999999999985
No 215
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=82.76 E-value=0.84 Score=39.36 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=19.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCC
Q 011717 447 DQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
+..+.|.|+.|.||||+.+.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356779999999999999887653
No 216
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=82.56 E-value=0.94 Score=44.20 Aligned_cols=27 Identities=33% Similarity=0.570 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
++.++.|+||.|+||||+-.-|+-.+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 446899999999999999999987553
No 217
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=82.36 E-value=0.85 Score=46.57 Aligned_cols=34 Identities=32% Similarity=0.319 Sum_probs=28.4
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
|+|.+ +.+-+||..++.|..|.||||++.+|.--
T Consensus 143 ~ID~l-~pigkGQr~~Ifgg~G~GKT~L~~~i~~~ 176 (482)
T 2ck3_D 143 VVDLL-APYAKGGKIGLFGGAGVGKTVLIMELINN 176 (482)
T ss_dssp HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEecc-cccccCCeeeeecCCCCChHHHHHHHHHh
Confidence 44433 67889999999999999999999988653
No 218
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=82.28 E-value=0.87 Score=49.13 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.++++|+-||||||++|.|+|.
T Consensus 71 ~V~VvG~~naGKSSLlNaLlg~ 92 (695)
T 2j69_A 71 RLLVLGDMKRGKSTFLNALIGE 92 (695)
T ss_dssp EEEEECCTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 219
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=82.24 E-value=0.79 Score=48.27 Aligned_cols=31 Identities=29% Similarity=0.434 Sum_probs=24.7
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
.|++.+. .+.++.+.|++|+|||||++.|..
T Consensus 196 ~Av~~~~----~~~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 196 SVLDQLA----GHRLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp HHHHHHT----TCSEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHH----hCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3555432 568999999999999999998865
No 220
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=82.18 E-value=0.71 Score=43.39 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=22.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.++..+-|.|+.|.||||+.+.+....
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345568899999999999999997643
No 221
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=81.90 E-value=0.58 Score=46.49 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
-+||+|..-+||||+||.|||.-
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~ 96 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTE 96 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999964
No 222
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=81.70 E-value=0.9 Score=41.48 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=24.7
Q ss_pred eeeeeEE-EEeCCcEEEEECCCCCcHHHHHHH
Q 011717 436 AIKGLWV-NIAKDQLFCLLGPNGAGKTTTISC 466 (479)
Q Consensus 436 AV~~lsl-~v~~gei~~LLG~NGAGKTTt~~m 466 (479)
.+|.+-= ++++|+++-+-|+.|+||||+.--
T Consensus 18 ~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~ 49 (251)
T 2zts_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHH
T ss_pred HHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHH
Confidence 3554433 689999999999999999998643
No 223
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=81.05 E-value=1 Score=47.49 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.7
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
-+++++|.-|+||||++|-|+|..
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cEEEEECCCCCCHHHHHHhHcCCC
Confidence 467899999999999999999964
No 224
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=80.37 E-value=1.1 Score=41.44 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=20.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
....+-|.|+.|.||||+.+.+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3445779999999999999998753
No 225
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=80.34 E-value=0.41 Score=48.73 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=31.3
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
..+|.+.-++++|+++.+-|+.|+||||+..-++..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 468888878999999999999999999998776653
No 226
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=78.74 E-value=0.85 Score=48.21 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 011717 449 LFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG 469 (479)
.++++||-++||||+++-|++
T Consensus 179 ~I~iiG~~d~GKSTLi~~Ll~ 199 (592)
T 3mca_A 179 HLVVTGHVDSGKSTMLGRIMF 199 (592)
T ss_dssp EEEEECCSSSTHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999964
No 227
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=78.68 E-value=1.1 Score=38.63 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=19.2
Q ss_pred cEEEEECCCCCcHHHHHHHHhCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
...-|.|+.|.||||+.+.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999888654
No 228
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=78.37 E-value=1.1 Score=46.99 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=17.4
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 011717 449 LFCLLGPNGAGKTTTISCL 467 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mL 467 (479)
-+|++||-+||||||.-.|
T Consensus 33 NiaIiaHvdaGKTTLtE~l 51 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKL 51 (548)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHH
Confidence 4789999999999999877
No 229
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=78.06 E-value=0.74 Score=47.34 Aligned_cols=21 Identities=38% Similarity=0.425 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 011717 450 FCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~ 470 (479)
++++||-|+||||+++-|++.
T Consensus 36 i~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 36 FVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp EEEESCGGGTHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999999764
No 230
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=78.02 E-value=1.1 Score=42.79 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 011717 449 LFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG 469 (479)
-++++|..|+||||+++.+++
T Consensus 157 ~i~i~G~~~~GKssli~~~~~ 177 (332)
T 2wkq_A 157 KCVVVGDGAVGKTCLLISYTT 177 (332)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHh
Confidence 478999999999999988875
No 231
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=77.70 E-value=1.3 Score=45.00 Aligned_cols=25 Identities=28% Similarity=0.607 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 447 DQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
...++++|+.|+||||+++-|+|..
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~~~ 219 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLGEE 219 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred cceeEEecCCCCCHHHHHHHHhCCC
Confidence 3467999999999999999999864
No 232
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=77.60 E-value=1.1 Score=40.56 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=21.5
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 444 IAKDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 444 v~~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
+++.-+..+-||.|+||||+...|...
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 455568889999999999998777643
No 233
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=77.49 E-value=0.31 Score=49.29 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.++++|+.|+||||+++.|+|..
T Consensus 36 kI~IvG~~~vGKSTLin~L~~~~ 58 (423)
T 3qq5_A 36 YIVVAGRRNVGKSSFMNALVGQN 58 (423)
T ss_dssp EEEEECSCSTTTTTTTTSSCC--
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999854
No 234
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=77.47 E-value=1.1 Score=43.83 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=20.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.+..+.|.|+.|.||||+.+.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999988753
No 235
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=75.98 E-value=1.3 Score=45.45 Aligned_cols=34 Identities=24% Similarity=0.242 Sum_probs=28.3
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
|+|. =+.+-+||..+|.|..|.||||++.+|.--
T Consensus 155 vID~-l~pigkGqr~gIfgg~GvGKT~L~~~l~~~ 188 (498)
T 1fx0_B 155 VVNL-LAPYRRGGKIGLFGGAGVGKTVLIMELINN 188 (498)
T ss_dssp THHH-HSCCCTTCCEEEEECSSSSHHHHHHHHHHH
T ss_pred Eeee-ecccccCCeEEeecCCCCCchHHHHHHHHH
Confidence 4443 367889999999999999999999988754
No 236
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=75.63 E-value=1.8 Score=39.42 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=18.3
Q ss_pred eCCcEEEEECCCCCcHHH-HHHHH
Q 011717 445 AKDQLFCLLGPNGAGKTT-TISCL 467 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTT-t~~mL 467 (479)
.+|.+..+-|+-|||||| +++.+
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~ 49 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRL 49 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999 55543
No 237
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=75.63 E-value=1.4 Score=45.18 Aligned_cols=23 Identities=35% Similarity=0.306 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.++++|..|+||||+++.|+|..
T Consensus 324 ki~lvG~~nvGKSsLl~~l~~~~ 346 (497)
T 3lvq_E 324 RILMLGLDAAGKTTILYKLKLGQ 346 (497)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Confidence 36799999999999999999853
No 238
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=75.30 E-value=0.95 Score=46.13 Aligned_cols=35 Identities=11% Similarity=0.195 Sum_probs=29.3
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
|+|.+ +.+-+||..++.|..|.||||++.||+-..
T Consensus 142 ~ID~l-~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~ 176 (469)
T 2c61_A 142 TIDGT-NTLVRGQKLPIFSASGLPHNEIALQIARQA 176 (469)
T ss_dssp HHHTT-SCCBTTCBCCEEECTTSCHHHHHHHHHHHC
T ss_pred eeeee-eccccCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 44443 678899999999999999999999998644
No 239
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=75.26 E-value=1.8 Score=44.27 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHhC
Q 011717 447 DQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLtG 469 (479)
..++.|+|..||||||+.+.|+.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998864
No 240
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=75.24 E-value=0.44 Score=49.04 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.++|+|..||||||+++.|+|..
T Consensus 245 kV~ivG~pnvGKSSLln~L~~~~ 267 (482)
T 1xzp_A 245 RMVIVGKPNVGKSTLLNRLLNED 267 (482)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECcCCCcHHHHHHHHHCCC
Confidence 47899999999999999999863
No 241
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=74.61 E-value=2 Score=44.64 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=28.2
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
|+|.+ +.+-+||..++.|..|+||||++.+|+.
T Consensus 211 vID~l-~PigrGqr~~Ifg~~g~GKT~l~~~ia~ 243 (578)
T 3gqb_A 211 ILDVL-FPVAMGGTAAIPGPFGSGKSVTQQSLAK 243 (578)
T ss_dssp HHHTT-SCEETTCEEEECCCTTSCHHHHHHHHHH
T ss_pred hhhhc-ccccCCCEEeeeCCCCccHHHHHHHHHh
Confidence 45443 6788999999999999999999999864
No 242
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=73.95 E-value=1.8 Score=42.80 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=26.6
Q ss_pred eeeeeEE--EEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717 436 AIKGLWV--NIAKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 436 AV~~lsl--~v~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
.+|.+-= ++++|+++-+.|+.|+||||+.--+.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la 95 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIV 95 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHH
Confidence 4555443 68999999999999999999976554
No 243
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=73.39 E-value=2.2 Score=40.89 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHhC
Q 011717 447 DQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLtG 469 (479)
++-+-|.|+.|.|||++...|..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 57888999999999999988865
No 244
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=73.30 E-value=2.1 Score=44.66 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=28.0
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
|+|. =+.+-+||..++.|..|+|||+++.+|+-
T Consensus 222 vID~-l~PigrGqr~~Ifgg~g~GKT~L~~~ia~ 254 (600)
T 3vr4_A 222 VIDT-FFPVTKGGAAAVPGPFGAGKTVVQHQIAK 254 (600)
T ss_dssp HHHH-HSCCBTTCEEEEECCTTSCHHHHHHHHHH
T ss_pred hhhc-cCCccCCCEEeeecCCCccHHHHHHHHHh
Confidence 4443 36788999999999999999999999864
No 245
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=73.15 E-value=1.8 Score=42.63 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=17.7
Q ss_pred cEEEEECCCCCcHHHHHHHHh
Q 011717 448 QLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLt 468 (479)
.-+-|||..|+||||+++-|-
T Consensus 34 ~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 34 VKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 346799999999999988764
No 246
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=72.78 E-value=1.4 Score=44.96 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 011717 449 LFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLt 468 (479)
.++++||-++||||+++-|+
T Consensus 45 ~i~iiG~vd~GKSTLi~~Ll 64 (467)
T 1r5b_A 45 NIVFIGHVDAGKSTLGGNIL 64 (467)
T ss_dssp EEEEEECGGGTHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
Confidence 47899999999999999885
No 247
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=72.64 E-value=2.6 Score=40.86 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=27.0
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
.+|.+--++++|.+.-|.|+.|+||||+..-+.
T Consensus 112 ~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA 144 (331)
T 2vhj_A 112 VVAEFGGHRYASGMVIVTGKGNSGKTPLVHALG 144 (331)
T ss_dssp EEEEETTEEEESEEEEEECSCSSSHHHHHHHHH
T ss_pred HHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 344443578999999999999999999988775
No 248
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=72.59 E-value=2.1 Score=37.73 Aligned_cols=20 Identities=40% Similarity=0.630 Sum_probs=17.7
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 011717 450 FCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG 469 (479)
+.|.|+.|.||||+.+.+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67889999999999998864
No 249
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=72.49 E-value=1.2 Score=45.13 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=30.8
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.|+|.+ +.+-+||..++.|..|.||||++.||+-..
T Consensus 140 raID~l-~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~ 175 (465)
T 3vr4_D 140 SAIDHL-NTLVRGQKLPVFSGSGLPHKELAAQIARQA 175 (465)
T ss_dssp HHHHTT-SCCBTTCBCCEEECTTSCHHHHHHHHHHHC
T ss_pred eEEecc-cccccCCEEEEeCCCCcChHHHHHHHHHHH
Confidence 466666 788999999999999999999999987543
No 250
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=72.45 E-value=1.3 Score=41.06 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 011717 450 FCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~ 470 (479)
+.|.|+.|.||||+.+.|...
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 558899999999999999863
No 251
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=72.43 E-value=1.8 Score=44.98 Aligned_cols=33 Identities=33% Similarity=0.424 Sum_probs=27.9
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
|+|. =+.+-+||..++.|.-|+||||++.+|+-
T Consensus 217 vID~-l~PigkGqr~~I~g~~g~GKT~L~~~ia~ 249 (588)
T 3mfy_A 217 VIDT-FFPQAKGGTAAIPGPAGSGKTVTQHQLAK 249 (588)
T ss_dssp HHHH-HSCEETTCEEEECSCCSHHHHHHHHHHHH
T ss_pred hhhc-cCCcccCCeEEeecCCCCCHHHHHHHHHh
Confidence 4443 36789999999999999999999999863
No 252
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=71.83 E-value=3.8 Score=39.42 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=25.4
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHH
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mL 467 (479)
..+++..+.+ .|.-..+.|+.|+||||+---|
T Consensus 136 ~~~H~~~v~~-~g~gvli~G~sG~GKStlal~l 167 (312)
T 1knx_A 136 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDL 167 (312)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHH
T ss_pred ceeEEEEEEE-CCEEEEEEcCCCCCHHHHHHHH
Confidence 5677766665 5888999999999999876655
No 253
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=71.77 E-value=1.1 Score=45.44 Aligned_cols=35 Identities=9% Similarity=0.143 Sum_probs=29.3
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
|+|.+ +.+-+||..++.|..|.||||++.+|+-..
T Consensus 137 aID~l-~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~ 171 (464)
T 3gqb_B 137 TIDVM-NTLVRGQKLPIFSGSGLPANEIAAQIARQA 171 (464)
T ss_dssp HHHTT-SCCBTTCBCCEEEETTSCHHHHHHHHHHHC
T ss_pred eeecc-cccccCCEEEEecCCCCCchHHHHHHHHHH
Confidence 55544 578899999999999999999999987543
No 254
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=71.51 E-value=1.9 Score=44.26 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=29.3
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHH-HHHHhCCC
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTT-ISCLTGIT 471 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt-~~mLtG~~ 471 (479)
|+|.+ +.+-+||..++.|..|.||||+ +.||.-..
T Consensus 165 aID~l-~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~ 200 (515)
T 2r9v_A 165 AIDSM-IPIGRGQRELIIGDRQTGKTAIAIDTIINQK 200 (515)
T ss_dssp HHHHH-SCEETTCBEEEEEETTSSHHHHHHHHHHTTT
T ss_pred ccccc-cccccCCEEEEEcCCCCCccHHHHHHHHHhh
Confidence 45443 6788999999999999999999 88887754
No 255
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=71.23 E-value=2.5 Score=44.88 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=20.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
+|.++.|.|..||||||..+.|.-
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~ 74 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEE 74 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 356889999999999999999863
No 256
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=70.68 E-value=2.5 Score=41.31 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=20.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCC
Q 011717 447 DQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
+..+.|.|+.|.||||+.+.+...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999988753
No 257
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=70.41 E-value=2.6 Score=45.26 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHh
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
.++||+.+.|..|||||.+-+.+.
T Consensus 92 ~~nQsIiisGESGAGKTe~tK~i~ 115 (697)
T 1lkx_A 92 QENQCVIISGESGAGKTEASKKIM 115 (697)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcEEEecCCCCCCchhhHHHHH
Confidence 467999999999999999988774
No 258
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=70.22 E-value=2.7 Score=39.81 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=19.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHhC
Q 011717 447 DQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLtG 469 (479)
+..+-|.|+.|.||||+.+.+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999986654
No 259
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=69.87 E-value=2.8 Score=43.47 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHh
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLt 468 (479)
...++.|.|..||||||+-+.|.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La 56 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLT 56 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999988885
No 260
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=69.57 E-value=2.7 Score=43.85 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=20.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
+|.++.|.|..||||||.-+.|.-
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~ 394 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILAT 394 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHH
Confidence 356789999999999999998864
No 261
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=69.53 E-value=1.6 Score=44.46 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
.+-|.|+.|.||||+.+.|.....
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 477889999999999999987653
No 262
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=69.15 E-value=2 Score=48.79 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.++++||-++||||+++-|++.
T Consensus 298 nIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 298 NVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999873
No 263
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=68.63 E-value=2.4 Score=43.10 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 011717 449 LFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG 469 (479)
.+.+.|+-|+||||++..+.-
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 899999999999999987753
No 264
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=68.41 E-value=3.4 Score=34.44 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
-+-|.|+.|.|||++.+.|....
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999999999999997654
No 265
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=68.29 E-value=2.8 Score=39.47 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=19.3
Q ss_pred cEEEEECCCCCcHHHHHHHHhCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
..+-|.|+.|.||||+.+.+...
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45668899999999999998753
No 266
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=67.81 E-value=2.1 Score=43.91 Aligned_cols=35 Identities=29% Similarity=0.431 Sum_probs=28.7
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHH-HHHHhCCC
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTT-ISCLTGIT 471 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt-~~mLtG~~ 471 (479)
|+|.+ +.+-+||..++.|..|.||||+ +.||.-..
T Consensus 152 aID~l-~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~ 187 (502)
T 2qe7_A 152 AIDSM-IPIGRGQRELIIGDRQTGKTTIAIDTIINQK 187 (502)
T ss_dssp HHHHS-SCCBTTCBCEEEECSSSCHHHHHHHHHHGGG
T ss_pred ecccc-cccccCCEEEEECCCCCCchHHHHHHHHHhh
Confidence 45443 5788999999999999999999 88887643
No 267
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=66.95 E-value=3.2 Score=45.17 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHh
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
.++||+.+.|..|||||.+-+.+.
T Consensus 169 ~~nQsIiiSGESGAGKTe~tK~im 192 (783)
T 4db1_A 169 RENQSILITGESGAGKTVNTKRVI 192 (783)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCceEEEeCCCCCCCchHHHHHH
Confidence 578999999999999999988764
No 268
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=66.89 E-value=3.2 Score=45.25 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHh
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
.++||+.+.|..|||||.+-+.+.
T Consensus 138 ~~nQsIiiSGESGAGKTe~tK~i~ 161 (784)
T 2v26_A 138 KLSQSIIVSGESGAGKTENTKFVL 161 (784)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcEEEEcCCCCCCceehHHHHH
Confidence 468999999999999999988774
No 269
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=66.18 E-value=3.5 Score=44.72 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHh
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
.++||+.+.|..|||||.+-+.+.
T Consensus 170 ~~nQsIiisGESGAGKTe~tK~i~ 193 (770)
T 1w9i_A 170 RQNQSLLITGESGAGKTENTKKVI 193 (770)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCCcEEEEecCCCCcchHHHHHHH
Confidence 578999999999999999988764
No 270
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=65.93 E-value=2 Score=44.06 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=29.8
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHH-HHHHhCCCC
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTT-ISCLTGITP 472 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt-~~mLtG~~~ 472 (479)
|+|.+ +.+-+||..++.|..|.||||+ +.||.-...
T Consensus 153 aID~l-~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~ 189 (507)
T 1fx0_A 153 AIDAM-IPVGRGQRELIIGDRQTGKTAVATDTILNQQG 189 (507)
T ss_dssp TTTTT-SCCBTTCBCBEEESSSSSHHHHHHHHHHTCCT
T ss_pred ecccc-cccccCCEEEEecCCCCCccHHHHHHHHHhhc
Confidence 45444 5788999999999999999999 889887653
No 271
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=65.81 E-value=2.4 Score=43.52 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=27.8
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHH-HHHHhCC
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTT-ISCLTGI 470 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt-~~mLtG~ 470 (479)
|+|.+ +.+-+||..++.|..|.||||+ +.||.-.
T Consensus 152 aID~l-~PigrGQR~~I~g~~g~GKT~Lal~~I~~q 186 (510)
T 2ck3_A 152 AVDSL-VPIGRGQRELIIGDRQTGKTSIAIDTIINQ 186 (510)
T ss_dssp HHHHH-SCCBTTCBCEEEESTTSSHHHHHHHHHHHT
T ss_pred eeccc-cccccCCEEEEecCCCCCchHHHHHHHHHH
Confidence 45444 5788999999999999999999 7777643
No 272
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=65.77 E-value=3.6 Score=44.82 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHh
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
.++||+.+.|..|||||.+-+.+.
T Consensus 154 ~~nQsIiisGESGAGKTe~tK~i~ 177 (795)
T 1w7j_A 154 ERNQSIIVSGESGAGKTVSAKYAM 177 (795)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCcchHHHHHH
Confidence 478999999999999999988774
No 273
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=65.40 E-value=3 Score=41.88 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=17.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHh
Q 011717 447 DQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLt 468 (479)
..-+.++|+.|+||||+++.+.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li 74 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELA 74 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHH
Confidence 3567899999999999986543
No 274
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=65.37 E-value=3.6 Score=43.19 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=21.0
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
++|.++.|.|..||||||.-+.|.-
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~ 418 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQV 418 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHH
Confidence 3456788999999999999998853
No 275
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=65.18 E-value=2.8 Score=41.42 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.+.+=|.-||||||.++.|.-.+
T Consensus 51 fIt~EG~dGsGKTT~~~~Lae~L 73 (376)
T 1of1_A 51 RVYIDGPHGMGKTTTTQLLVALG 73 (376)
T ss_dssp EEEECSSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45666999999999999998754
No 276
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=65.13 E-value=3.6 Score=38.23 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 011717 449 LFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG 469 (479)
.+-|.|+.|.||||+.+.+..
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 556889999999999998864
No 277
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=65.12 E-value=2.2 Score=41.28 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=18.2
Q ss_pred EEeCCcEEEEECCCCCcHHHHHH
Q 011717 443 NIAKDQLFCLLGPNGAGKTTTIS 465 (479)
Q Consensus 443 ~v~~gei~~LLG~NGAGKTTt~~ 465 (479)
++++| ++-+-|+.|+||||+.-
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~L 46 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGL 46 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHH
Confidence 35677 78899999999999943
No 278
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=64.92 E-value=3.6 Score=43.52 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=19.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHh
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLt 468 (479)
.+..+.+-|+.|+|||||+.-+.
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll 185 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLL 185 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHH
Confidence 57889999999999999987553
No 279
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=64.84 E-value=4.1 Score=39.80 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=20.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCC
Q 011717 447 DQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
...+-|.|+.|.||||+.+.|...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999998764
No 280
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=64.56 E-value=3.6 Score=40.17 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=19.4
Q ss_pred cEEEEECCCCCcHHHHHHHHhCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.-+.|.||.|.||||+.+.|...
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34668999999999999998764
No 281
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=64.40 E-value=3.2 Score=42.79 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=18.0
Q ss_pred eCCcEEEEECCCCCcHHHHH
Q 011717 445 AKDQLFCLLGPNGAGKTTTI 464 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~ 464 (479)
.+|+...+.|..|+|||||-
T Consensus 211 ~~g~~~~ffGlSGtGKTTLs 230 (524)
T 1ii2_A 211 KQGDVTVFFGLSGTGKTTLS 230 (524)
T ss_dssp TTCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEEccCCcchhhhh
Confidence 57899999999999999964
No 282
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=63.26 E-value=3.4 Score=42.64 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=17.6
Q ss_pred eCCcEEEEECCCCCcHHHHH
Q 011717 445 AKDQLFCLLGPNGAGKTTTI 464 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~ 464 (479)
.+|+...+.|..|+|||||-
T Consensus 239 ~~g~~~lffGlSGtGKTTLs 258 (540)
T 2olr_A 239 EKGDVAVFFGLSGTGKTTLS 258 (540)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCHHHHh
Confidence 36789999999999999964
No 283
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=63.02 E-value=2.9 Score=42.85 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=29.8
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHH-HHHHhCC
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTT-ISCLTGI 470 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt-~~mLtG~ 470 (479)
.|+|.+ +.+-+||..++.|.-|.||||+ +.+|.-.
T Consensus 151 kaID~l-~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~ 186 (513)
T 3oaa_A 151 KAVDSM-IPIGRGQRELIIGDRQTGKTALAIDAIINQ 186 (513)
T ss_dssp HHHHHH-SCCBTTCBCEEEESSSSSHHHHHHHHHHTT
T ss_pred eeeccc-cccccCCEEEeecCCCCCcchHHHHHHHhh
Confidence 467666 7889999999999999999999 7888653
No 284
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=63.00 E-value=3.3 Score=41.90 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhCCCC
Q 011717 450 FCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
+-|.||.|+||||+.+.|++.+.
T Consensus 53 iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 53 ILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHcC
Confidence 55889999999999999987654
No 285
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=62.78 E-value=4.8 Score=38.46 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHh
Q 011717 447 DQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLt 468 (479)
|.++.+.|+-|.||||+++-+.
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHH
Confidence 4688999999999999998775
No 286
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=62.75 E-value=4.4 Score=39.36 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
+|..+-|.|+.|.||||+.+.+....
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678899999999999999988643
No 287
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=62.63 E-value=3.5 Score=41.78 Aligned_cols=34 Identities=9% Similarity=0.073 Sum_probs=28.8
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
..+|.+.-++++|+.+.+-|+.|.||||+.--++
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia 218 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQA 218 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHH
Confidence 4677776679999999999999999999976554
No 288
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=62.20 E-value=4.3 Score=45.63 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
.++||+.+.|..|||||.+-+.+.-
T Consensus 142 ~~nQsIiiSGESGAGKTestK~im~ 166 (1052)
T 4anj_A 142 KLSQSIIVSGESGAGKTENTKFVLR 166 (1052)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHH
Confidence 4679999999999999999888753
No 289
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=61.73 E-value=3.8 Score=44.93 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHh
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
.++||+.+.|..|||||.+-+.+.
T Consensus 167 ~~nQsIiiSGESGAGKTe~tK~i~ 190 (837)
T 1kk8_A 167 RENQSCLITGESGAGKTENTKKVI 190 (837)
T ss_dssp TSEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCchhhHHHHH
Confidence 578999999999999999988763
No 290
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=61.63 E-value=4.4 Score=45.42 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHh
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
.++||+.+.|..|||||.+-+.+.
T Consensus 144 ~~~QsIiisGESGAGKTe~~K~i~ 167 (995)
T 2ycu_A 144 REDQSILCTGESGAGKTENTKKVI 167 (995)
T ss_dssp CCCEEEEEECBTTSSHHHHHHHHH
T ss_pred CCCcEEEecCCCCCCchhhHHHHH
Confidence 578999999999999999988763
No 291
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=61.42 E-value=4.4 Score=39.90 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=18.0
Q ss_pred cEEEE--ECCCCCcHHHHHHHHhC
Q 011717 448 QLFCL--LGPNGAGKTTTISCLTG 469 (479)
Q Consensus 448 ei~~L--LG~NGAGKTTt~~mLtG 469 (479)
.+..+ .|+-|.||||+.+.+..
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~ 74 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVK 74 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHH
Confidence 45556 79999999999998764
No 292
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=61.15 E-value=3 Score=42.90 Aligned_cols=33 Identities=9% Similarity=0.062 Sum_probs=27.8
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
.+|.+.-++++|+++.+-|+.|.||||+..-++
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a 263 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQA 263 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHH
Confidence 466665579999999999999999999976554
No 293
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=60.96 E-value=4 Score=42.16 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=16.8
Q ss_pred CC-cEEEEECCCCCcHHHHH
Q 011717 446 KD-QLFCLLGPNGAGKTTTI 464 (479)
Q Consensus 446 ~g-ei~~LLG~NGAGKTTt~ 464 (479)
.| +...+.|..|+|||||-
T Consensus 233 ~g~~~~~ffGlSGtGKTTLs 252 (532)
T 1ytm_A 233 EGKNTAIFFGLSGTGKTTLS 252 (532)
T ss_dssp TSCSEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEEecCCCCHHHHh
Confidence 56 89999999999999964
No 294
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=60.95 E-value=5.5 Score=38.32 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.-+-|.||.|.||||+.+.+....
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 356788999999999999998654
No 295
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=60.89 E-value=4.2 Score=39.20 Aligned_cols=26 Identities=12% Similarity=0.232 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
++.+.-|-|+-|.|||++.+.+...+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45677889999999999999887644
No 296
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=60.80 E-value=4.6 Score=39.57 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=19.9
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
..+-|.|+.|.||||+.+.|....
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999987543
No 297
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=60.70 E-value=5.4 Score=38.63 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
..-|-|+.|.||||+.+.+....
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45688999999999999987543
No 298
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=60.67 E-value=4.9 Score=38.02 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.+.|-||.|.|||++.+.|+..
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4556699999999999988753
No 299
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=60.58 E-value=4.8 Score=41.56 Aligned_cols=27 Identities=7% Similarity=-0.086 Sum_probs=22.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
++|.++.|.|..||||||+=+.|.-.+
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHH
Confidence 456788999999999999999987543
No 300
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=59.97 E-value=4.8 Score=45.15 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHh
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
.++||+.+.|..|||||.+-+.+.
T Consensus 170 ~~~QsIiisGESGAGKTe~~K~i~ 193 (1010)
T 1g8x_A 170 RQNQSLLITGESGAGKTENTKKVI 193 (1010)
T ss_dssp TCCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCcchHHHHHH
Confidence 578999999999999999988753
No 301
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=59.87 E-value=5.2 Score=45.25 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.1
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
.++||+.+.|..|||||.+-+.+.-
T Consensus 154 ~~~QsIiisGESGAGKTe~~K~i~~ 178 (1080)
T 2dfs_A 154 ERNQSIIVSGESGAGKTVSAKYAMR 178 (1080)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEcCCCCCCccchHHHHHH
Confidence 4789999999999999999888753
No 302
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=59.56 E-value=4.3 Score=39.80 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=15.3
Q ss_pred EEEECCCCCcHHHHHHHH
Q 011717 450 FCLLGPNGAGKTTTISCL 467 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mL 467 (479)
+-|||..++||||+++-+
T Consensus 35 lLlLG~geSGKST~~KQm 52 (353)
T 1cip_A 35 LLLLGAGESGKSTIVKQM 52 (353)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEEcCCCCCchhHHHHH
Confidence 569999999999997654
No 303
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=58.72 E-value=2.7 Score=49.67 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=25.9
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 443 NIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 443 ~v~~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
++++|+++.|.|++|.||||+..-++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 69999999999999999999998886543
No 304
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=58.23 E-value=7.5 Score=37.13 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=23.1
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGITPVT 474 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~~pT 474 (479)
=++.+=|.-||||+|+++.|+.-+.|-
T Consensus 87 vlIvfEG~DgAGKgt~Ik~L~e~Ldpr 113 (304)
T 3czq_A 87 VMAVFEGRDAAGKGGAIHATTANMNPR 113 (304)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSCTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhccc
Confidence 466677999999999999999988764
No 305
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=58.19 E-value=5.5 Score=38.18 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 011717 450 FCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~ 470 (479)
+-|.|+.|.||||+.+.+...
T Consensus 58 vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 58 ILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 568899999999999998754
No 306
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=57.53 E-value=6.4 Score=42.68 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
-++++|.-+|||||+++.|+|.-
T Consensus 53 ~I~vvG~~saGKSSllnaL~g~~ 75 (772)
T 3zvr_A 53 QIAVVGGQSAGKSSVLENFVGRD 75 (772)
T ss_dssp EEEEEECTTTCHHHHHHHHHSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 35799999999999999999953
No 307
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=57.45 E-value=4.2 Score=38.97 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=22.7
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 444 IAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 444 v~~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
+..|.-+-|.|+.|.||||+.+.|....
T Consensus 43 l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 43 ICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3345678899999999999999988644
No 308
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=57.33 E-value=6 Score=37.40 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 011717 450 FCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~ 470 (479)
+-|-|+.|.||||+.+.+...
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 668899999999999988643
No 309
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=57.32 E-value=6.8 Score=37.49 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=19.4
Q ss_pred cEEEEECCCCCcHHHHHHHHhCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
..+-|.|+.|.|||++.+.+...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35678999999999999998753
No 310
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=57.22 E-value=6.8 Score=40.39 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=22.5
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHH
Q 011717 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464 (479)
Q Consensus 434 ~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~ 464 (479)
..+.+.....=++|++..+.|+.|+||||+-
T Consensus 212 ~L~~H~sa~~~~~g~~~~ffGlSGtGKTtLs 242 (529)
T 1j3b_A 212 VFPMHASANVGKEGDVAVFFGLSGTGKTTLS 242 (529)
T ss_dssp CEEEECEEEECTTCCEEEEEECTTSCHHHHT
T ss_pred eEeccceeeeCCCCcEEEEEccccCChhhHh
Confidence 3555554322258899999999999999953
No 311
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=57.11 E-value=6.7 Score=36.14 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
-+-|.|+.|.|||++.+.|.....
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTST
T ss_pred CEEEECCCCCcHHHHHHHHHHhcC
Confidence 456889999999999999986554
No 312
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=56.60 E-value=6.9 Score=40.35 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHhCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
..+-|-|+.|.||||+.+.+...
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57789999999999999998754
No 313
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=56.04 E-value=5.6 Score=40.51 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 011717 450 FCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.-|.|++|.||||+.+.|...
T Consensus 204 ~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 204 PVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp EEEESCTTTTTHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999998764
No 314
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=54.84 E-value=7.3 Score=35.23 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=18.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHH
Q 011717 445 AKDQLFCLLGPNGAGKTTTISC 466 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~m 466 (479)
.+|++..+-|+=|+||||.+--
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~ 47 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIR 47 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHH
Confidence 4578999999999999997643
No 315
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=54.67 E-value=6.3 Score=41.91 Aligned_cols=22 Identities=41% Similarity=0.681 Sum_probs=17.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHH
Q 011717 446 KDQLFCLLGPNGAGKTTTISCL 467 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mL 467 (479)
...+.-+-||-|.|||||+--+
T Consensus 204 ~~~~~lI~GPPGTGKT~ti~~~ 225 (646)
T 4b3f_X 204 QKELAIIHGPPGTGKTTTVVEI 225 (646)
T ss_dssp CSSEEEEECCTTSCHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHH
Confidence 3457789999999999997543
No 316
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=54.37 E-value=4.4 Score=33.69 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 011717 450 FCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
+-|.|+.|.|||++.+.|....
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTT
T ss_pred EEEECCCCccHHHHHHHHHHhC
Confidence 5588999999999998887643
No 317
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.60 E-value=7.3 Score=36.69 Aligned_cols=20 Identities=40% Similarity=0.737 Sum_probs=17.4
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 011717 450 FCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG 469 (479)
..|.|+.|.||||+.+.+..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~ 64 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAH 64 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 66889999999999988764
No 318
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=53.13 E-value=7.4 Score=37.95 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=19.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCC
Q 011717 447 DQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
..-+-|.|+.|.||||+.+.+...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 345778999999999999988753
No 319
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=53.03 E-value=7.5 Score=36.54 Aligned_cols=20 Identities=40% Similarity=0.630 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 011717 450 FCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG 469 (479)
.-|-|+.|.||||+.+.+..
T Consensus 41 ~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHH
Confidence 56889999999999988864
No 320
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=52.55 E-value=7.2 Score=39.39 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=21.1
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717 443 NIAKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 443 ~v~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
...+..+..+.|+-|+||||++.-+.
T Consensus 157 ~~~~~~v~~I~G~aGsGKTt~I~~~~ 182 (446)
T 3vkw_A 157 HVSSAKVVLVDGVPGCGKTKEILSRV 182 (446)
T ss_dssp CCCCSEEEEEEECTTSCHHHHHHHHC
T ss_pred ccccccEEEEEcCCCCCHHHHHHHHh
Confidence 34556788899999999999997654
No 321
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=52.18 E-value=6.4 Score=39.86 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=20.6
Q ss_pred cEEEEECCCCCcHHHHHHHHhCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
-+++++|+-.+||||++|-|.|.
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhhh
Confidence 47899999999999999999763
No 322
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=52.14 E-value=8.8 Score=40.59 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=19.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHhC
Q 011717 447 DQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLtG 469 (479)
+.+..+.||-|+|||||+.-+..
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~ 217 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVY 217 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHH
Confidence 56788999999999999876543
No 323
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=52.08 E-value=5.6 Score=43.87 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
...|.|++|.||||+.+.|....
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999988643
No 324
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=51.84 E-value=5.5 Score=37.78 Aligned_cols=21 Identities=38% Similarity=0.600 Sum_probs=18.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 011717 449 LFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG 469 (479)
.+.|.|+.|.||||+.+.+..
T Consensus 40 ~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 466899999999999998854
No 325
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=51.80 E-value=8 Score=36.87 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.2
Q ss_pred cEEEEECCCCCcHHHHHHHHhC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG 469 (479)
.++.+.|+-|.||||+++-+..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999988754
No 326
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=50.86 E-value=9.8 Score=38.37 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
+..-+-|.||.|.||||+.+.+....
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 44567899999999999999998654
No 327
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=50.66 E-value=10 Score=37.35 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
++..+-|.|+.|.|||++.+.|+..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3567889999999999999998653
No 328
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=48.45 E-value=11 Score=41.31 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=18.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHhC
Q 011717 447 DQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLtG 469 (479)
+.+..+.|+-|.|||||+.-+..
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~i~ 393 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATIVY 393 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 46778999999999999876543
No 329
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=48.02 E-value=6.3 Score=45.14 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHh
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
.++||+.+.|..|||||.+-+.+.
T Consensus 167 ~~~Q~i~isGeSGaGKTe~~k~~~ 190 (1184)
T 1i84_S 167 REDQSILCTGESGAGKTENTKKVI 190 (1184)
T ss_dssp TCCEEEECCCSTTSSTTHHHHHHH
T ss_pred CCCcEEEEecCCCCCccHHHHHHH
Confidence 578999999999999999988763
No 330
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=46.86 E-value=12 Score=38.97 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=19.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHhC
Q 011717 447 DQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLtG 469 (479)
+.++++.|+-|.||||+..-+..
T Consensus 147 ~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 147 PGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEcCCCCCHHHHHHHHHh
Confidence 46889999999999999987753
No 331
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=46.09 E-value=11 Score=39.36 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=22.9
Q ss_pred eEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717 440 LWVNIAKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 440 lsl~v~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
+.+++.++--..+.|..|+|||++++.|.
T Consensus 207 v~~DL~k~pHlLIaG~TGSGKS~~L~tlI 235 (574)
T 2iut_A 207 IITDLAKMPHLLVAGTTGSGKSVGVNAML 235 (574)
T ss_dssp EEEEGGGSCCEEEECCTTSSHHHHHHHHH
T ss_pred EEEEhhhCCeeEEECCCCCCHHHHHHHHH
Confidence 44555567788999999999999998643
No 332
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=46.00 E-value=9.7 Score=41.93 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=20.8
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
..+.|.|++|.|||++.+.|....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999999987654
No 333
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=45.93 E-value=6.8 Score=37.57 Aligned_cols=23 Identities=30% Similarity=0.693 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhCCCC
Q 011717 450 FCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
+-|.|+.|.||||+.+.|.....
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 66889999999999999986543
No 334
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.06 E-value=7.9 Score=38.94 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 011717 450 FCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~ 470 (479)
+-|-||-|.|||++.+.+++.
T Consensus 209 iLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999864
No 335
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=44.31 E-value=14 Score=37.20 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
.-+-|.||.|.||||+-+.|+...
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHh
Confidence 456789999999999999988654
No 336
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=44.24 E-value=14 Score=40.04 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=20.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
++....|.|+.|.||||+.+.|...
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 3455689999999999999988753
No 337
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=43.80 E-value=14 Score=40.48 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=18.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHh
Q 011717 447 DQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLt 468 (479)
+....+.|+-|+|||||+.-+.
T Consensus 375 ~~~~lI~GppGTGKT~~i~~~i 396 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTSATIV 396 (802)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHH
Confidence 4577899999999999986553
No 338
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=42.88 E-value=14 Score=37.70 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=21.1
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717 445 AKDQLFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~~mLtG~ 470 (479)
....-+-|.|+.|.|||++.+.|...
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 34455788999999999999998754
No 339
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.86 E-value=10 Score=38.14 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 011717 450 FCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~ 470 (479)
+-|-||-|.|||++.+.+++.
T Consensus 218 vLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 218 ALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred eEEECcCCCCHHHHHHHHHHH
Confidence 347899999999999999874
No 340
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=41.55 E-value=14 Score=37.86 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=27.7
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
+++.+-..+..|.-+-|.|+.|.|||++.+.|....
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 444444555566778899999999999999998754
No 341
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.50 E-value=9.8 Score=38.36 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 011717 450 FCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~ 470 (479)
+-|-||-|.|||++.+.|++.
T Consensus 218 vLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 457899999999999999874
No 342
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=41.28 E-value=18 Score=33.88 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.9
Q ss_pred cEEEEECCCCCcHHHHHHHHhC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG 469 (479)
-++.|-||-|.|||++...|+.
T Consensus 105 n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4788999999999999998885
No 343
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=41.26 E-value=12 Score=34.36 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=15.5
Q ss_pred ECCCCCcHHHHHHHHhC
Q 011717 453 LGPNGAGKTTTISCLTG 469 (479)
Q Consensus 453 LG~NGAGKTTt~~mLtG 469 (479)
-|.-|+||||+++-+++
T Consensus 34 ~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 34 KGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp TTTCCCSHHHHHHHHHC
T ss_pred cCCCCcCHHHHHHHHHh
Confidence 37789999999999998
No 344
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=40.29 E-value=17 Score=34.45 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=17.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
++-+-|+.|.||||+.+.++...
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHT
T ss_pred EEEeeCcCCCCHHHHHHHHHHHh
Confidence 33445779999999999987543
No 345
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.74 E-value=12 Score=37.37 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 011717 450 FCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~ 470 (479)
+-|-||-|.|||++.+.+++.
T Consensus 185 vLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHH
T ss_pred eEEeCCCCCCHHHHHHHHHHh
Confidence 347799999999999999874
No 346
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=39.58 E-value=12 Score=37.15 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=16.0
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 011717 449 LFCLLGPNGAGKTTTISCL 467 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mL 467 (479)
-+-|||.-++||||.++-+
T Consensus 42 klLLLG~geSGKSTi~KQm 60 (402)
T 1azs_C 42 RLLLLGAGESGKSTIVKQM 60 (402)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred eEEEecCCCCchhhHHHHH
Confidence 3569999999999998754
No 347
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=39.13 E-value=10 Score=33.22 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=18.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHh
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLt 468 (479)
+|+...+.++.|+|||.+.-.+.
T Consensus 47 ~~~~~li~~~tGsGKT~~~~~~~ 69 (216)
T 3b6e_A 47 EGKNIIICLPTGSGKTRVAVYIA 69 (216)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHH
T ss_pred cCCCEEEEcCCCCCHHHHHHHHH
Confidence 45678899999999999876543
No 348
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=38.91 E-value=18 Score=31.39 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=14.5
Q ss_pred CcEEEEECCCCCcHHHHH
Q 011717 447 DQLFCLLGPNGAGKTTTI 464 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~ 464 (479)
|+-..+.++.|+|||.++
T Consensus 38 ~~~~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAF 55 (207)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCChHHHHH
Confidence 455678899999999864
No 349
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=38.25 E-value=22 Score=35.96 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=18.6
Q ss_pred cEEEEECCCCCcHHHHHHHHh
Q 011717 448 QLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLt 468 (479)
-+++++|+-++||||++|-|.
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHHH
Confidence 478899999999999999664
No 350
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=37.27 E-value=17 Score=45.04 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.8
Q ss_pred cEEEEECCCCCcHHHHHHHHhC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG 469 (479)
..+-|+|+.|+||||..++|..
T Consensus 924 ~gvmlvGptgsGKTt~~~~La~ 945 (2695)
T 4akg_A 924 QALILVGKAGCGKTATWKTVID 945 (2695)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999874
No 351
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=36.29 E-value=19 Score=39.28 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhCCCC
Q 011717 450 FCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
+-|-||-|.||||+.+.+++...
T Consensus 241 ILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 241 ILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp EEEECCTTSCHHHHHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45889999999999999998653
No 352
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=35.95 E-value=20 Score=42.47 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=27.3
Q ss_pred ceeeee-E-EEEeCCcEEEEECCCCCcHHHHHHHH
Q 011717 435 HAIKGL-W-VNIAKDQLFCLLGPNGAGKTTTISCL 467 (479)
Q Consensus 435 ~AV~~l-s-l~v~~gei~~LLG~NGAGKTTt~~mL 467 (479)
..+|++ . -++++|+++-|.|+.|+|||++.--+
T Consensus 20 ~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlql 54 (1706)
T 3cmw_A 20 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 54 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHH
Confidence 457775 3 57999999999999999999986554
No 353
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=35.92 E-value=18 Score=38.95 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.+-|.|+.|.|||++.+.|...
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 6789999999999999988753
No 354
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=35.50 E-value=20 Score=43.06 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=28.1
Q ss_pred ceeeeeEE--EEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717 435 HAIKGLWV--NIAKDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 435 ~AV~~lsl--~v~~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
..+|.+-= ++++|+++-|-|+.|+||||+.--++.
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~ 405 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 35666532 599999999999999999999776654
No 355
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=35.13 E-value=22 Score=36.72 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=19.2
Q ss_pred cEEEEECCCCCcHHHHHHHHh
Q 011717 448 QLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLt 468 (479)
.++++.|.-|.||||+-..+.
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~ 173 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQAL 173 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 688999999999999998876
No 356
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=35.01 E-value=25 Score=42.38 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=23.6
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717 443 NIAKDQLFCLLGPNGAGKTTTISCLT 468 (479)
Q Consensus 443 ~v~~gei~~LLG~NGAGKTTt~~mLt 468 (479)
++++|+++-|.||.|.||||+-.-+.
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala 1448 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVI 1448 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHH
Confidence 59999999999999999999987663
No 357
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=34.87 E-value=17 Score=31.68 Aligned_cols=20 Identities=20% Similarity=0.213 Sum_probs=15.2
Q ss_pred CCcEEEEECCCCCcHHHHHH
Q 011717 446 KDQLFCLLGPNGAGKTTTIS 465 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~ 465 (479)
+|+-+.+.++.|+|||.++-
T Consensus 39 ~~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 39 SGRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TTCCEEEECCSSSTTHHHHH
T ss_pred cCCCEEEECCCCCchHHHHH
Confidence 34556788999999997544
No 358
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=34.67 E-value=26 Score=32.88 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=18.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG 469 (479)
++.++++.|.-|.||||+--.|+.
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHHH
Confidence 346777779999999998776654
No 359
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.55 E-value=14 Score=37.41 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 011717 450 FCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~ 470 (479)
+-|-||-|.|||++.+.|++.
T Consensus 246 ILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 246 ILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp EEECSCTTSSHHHHHHHHHHH
T ss_pred eEeeCCCCCcHHHHHHHHHhc
Confidence 447799999999999999874
No 360
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=34.35 E-value=22 Score=31.42 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=15.1
Q ss_pred CCcEEEEECCCCCcHHHHH
Q 011717 446 KDQLFCLLGPNGAGKTTTI 464 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~ 464 (479)
+|.-..+.++.|+|||.++
T Consensus 50 ~~~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 50 EGHDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred cCCCEEEECCCCCcHHHHH
Confidence 3455778899999999873
No 361
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=33.32 E-value=20 Score=45.12 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.+-|+||.|+||||..++|..-
T Consensus 908 GvmlVGp~gsGKTt~~~~L~~a 929 (3245)
T 3vkg_A 908 GVMMVGPSGGGKTTSWEVYLEA 929 (3245)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999753
No 362
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.97 E-value=17 Score=36.48 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 011717 450 FCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~ 470 (479)
+-|-||-|.|||++.+.+++.
T Consensus 219 vLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 219 VILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp EEEESSTTTTHHHHHHHHHHH
T ss_pred CceECCCCchHHHHHHHHHHH
Confidence 457899999999999999874
No 363
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=32.78 E-value=23 Score=38.28 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.+-|.|+.|.|||++.+.|...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988754
No 364
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=32.37 E-value=26 Score=35.89 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=22.9
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGITPVT 474 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~~pT 474 (479)
=++.+=|.-||||+|+++.|+.-+.|-
T Consensus 301 vlIvfEG~DaAGKg~~Ik~l~~~ldpr 327 (500)
T 3czp_A 301 LVAVFEGNDAAGKGGAIRRVTDALDPR 327 (500)
T ss_dssp EEEEEEESTTSCHHHHHHHHHTTSCGG
T ss_pred EEEEEeccCCCCHHHHHHHHHHhcCcc
Confidence 366777999999999999999987663
No 365
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=32.32 E-value=26 Score=31.23 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=15.4
Q ss_pred CCcEEEEECCCCCcHHHHH
Q 011717 446 KDQLFCLLGPNGAGKTTTI 464 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~ 464 (479)
+|+-+.+.++.|+|||..+
T Consensus 61 ~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 61 QGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp TTCCEEEECCTTSCHHHHH
T ss_pred CCCCEEEEeCCCCcHHHHH
Confidence 4566778899999999964
No 366
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=31.13 E-value=23 Score=38.28 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 011717 450 FCLLGPNGAGKTTTISCLTGI 470 (479)
Q Consensus 450 ~~LLG~NGAGKTTt~~mLtG~ 470 (479)
.-|.|+.|.||||+.+.|...
T Consensus 204 vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 204 PVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp EEEESCTTTTTHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999988754
No 367
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=30.91 E-value=17 Score=38.83 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=17.5
Q ss_pred CCcEEEEECCCCCcHHHHHH
Q 011717 446 KDQLFCLLGPNGAGKTTTIS 465 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~ 465 (479)
.|+.+.+.||.|+||||..-
T Consensus 45 ~~~~~lv~apTGsGKT~~~~ 64 (715)
T 2va8_A 45 EGNRLLLTSPTGSGKTLIAE 64 (715)
T ss_dssp TTCCEEEECCTTSCHHHHHH
T ss_pred CCCcEEEEcCCCCcHHHHHH
Confidence 47888999999999999863
No 368
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=30.43 E-value=31 Score=31.17 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=17.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHH
Q 011717 446 KDQLFCLLGPNGAGKTTTISCL 467 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mL 467 (479)
+++-..+.|+.|+|||.+.-.+
T Consensus 107 ~~~~~ll~~~tG~GKT~~a~~~ 128 (237)
T 2fz4_A 107 VDKRGCIVLPTGSGKTHVAMAA 128 (237)
T ss_dssp TTSEEEEEESSSTTHHHHHHHH
T ss_pred hCCCEEEEeCCCCCHHHHHHHH
Confidence 3445778899999999987554
No 369
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=30.34 E-value=28 Score=30.89 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=15.7
Q ss_pred CCcEEEEECCCCCcHHHHHH
Q 011717 446 KDQLFCLLGPNGAGKTTTIS 465 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~ 465 (479)
+|+-..+.++.|+|||..+-
T Consensus 56 ~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 56 QGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TTCCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCChHHHHHH
Confidence 45566788999999998643
No 370
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=29.13 E-value=20 Score=37.71 Aligned_cols=24 Identities=17% Similarity=0.512 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGITP 472 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~~ 472 (479)
-+-|.|+.|.|||++.+.+....+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~ 352 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAP 352 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCS
T ss_pred ceEEECCCchHHHHHHHHHHHhCC
Confidence 577899999999999999988764
No 371
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=29.10 E-value=26 Score=37.42 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=15.3
Q ss_pred CCcEEEEECCCCCcHHH
Q 011717 446 KDQLFCLLGPNGAGKTT 462 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTT 462 (479)
+|+.+.+.||.|+|||+
T Consensus 154 ~rk~vlv~apTGSGKT~ 170 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTY 170 (677)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCCEEEEEcCCCCCHHH
Confidence 46788899999999999
No 372
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=29.10 E-value=29 Score=31.48 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=16.4
Q ss_pred CCcEEEEECCCCCcHHHHHH
Q 011717 446 KDQLFCLLGPNGAGKTTTIS 465 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~ 465 (479)
+|+-+.+.++.|+|||..+-
T Consensus 79 ~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 79 QGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp TTCCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEcCCCCCchhHhH
Confidence 56678888999999998753
No 373
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=29.02 E-value=32 Score=34.55 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=19.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717 446 KDQLFCLLGPNGAGKTTTISCLTGIT 471 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~mLtG~~ 471 (479)
++.++|+-|-|| ||||=+||.-++
T Consensus 111 ~~~~IaVTGTnG--KTTTt~ml~~iL 134 (451)
T 3lk7_A 111 ESQLIGITGSNG--KTTTTTMIAEVL 134 (451)
T ss_dssp CSEEEEEECSSC--HHHHHHHHHHHH
T ss_pred CCCEEEEECCCC--HHHHHHHHHHHH
Confidence 357899999997 999999986543
No 374
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=28.46 E-value=32 Score=32.15 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=16.7
Q ss_pred CCcEEEEECCCCCcHHHHHHH
Q 011717 446 KDQLFCLLGPNGAGKTTTISC 466 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~m 466 (479)
+|+-+.+.++.|+|||..+-+
T Consensus 30 ~~~~~lv~~~TGsGKT~~~~~ 50 (337)
T 2z0m_A 30 QGKNVVVRAKTGSGKTAAYAI 50 (337)
T ss_dssp TTCCEEEECCTTSSHHHHHHH
T ss_pred cCCCEEEEcCCCCcHHHHHHH
Confidence 456678899999999987644
No 375
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=26.89 E-value=26 Score=33.08 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Q 011717 449 LFCLLGPNGAGKTTTISCLTGITPV 473 (479)
Q Consensus 449 i~~LLG~NGAGKTTt~~mLtG~~~p 473 (479)
++.+=|.-||||.++++-|+.-+.|
T Consensus 77 lIvfEG~DaAGKgg~Ik~l~~~ldP 101 (289)
T 3rhf_A 77 LLILQAMDTAGKGGIVSHVVGAMDP 101 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCG
T ss_pred EEEEECCCCCChHHHHHHHHHhcCc
Confidence 6667799999999999999986665
No 376
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=26.36 E-value=39 Score=29.62 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=14.9
Q ss_pred CcEEEEECCCCCcHHHHHHH
Q 011717 447 DQLFCLLGPNGAGKTTTISC 466 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~m 466 (479)
|+-..+.++.|+|||.+.-+
T Consensus 51 ~~~~li~~~TGsGKT~~~~~ 70 (220)
T 1t6n_A 51 GMDVLCQAKSGMGKTAVFVL 70 (220)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEECCCCCchhhhhhH
Confidence 34467789999999986543
No 377
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=25.73 E-value=33 Score=30.76 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=15.1
Q ss_pred CCcEEEEECCCCCcHHHHH
Q 011717 446 KDQLFCLLGPNGAGKTTTI 464 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~ 464 (479)
+|+-+.+.++.|+|||.++
T Consensus 65 ~~~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 65 HGRELLASAPTGSGKTLAF 83 (245)
T ss_dssp TTCCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 3555788899999999863
No 378
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=25.34 E-value=38 Score=30.07 Aligned_cols=20 Identities=20% Similarity=0.219 Sum_probs=15.8
Q ss_pred eCCcEEEEECCCCCcHHHHH
Q 011717 445 AKDQLFCLLGPNGAGKTTTI 464 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~ 464 (479)
.+|+-+.+.++.|+|||..+
T Consensus 59 ~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 59 RCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp HTTCCEEEECCTTSSHHHHH
T ss_pred hCCCCEEEECCCCCcHHHHH
Confidence 34566778899999999874
No 379
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=25.12 E-value=23 Score=37.89 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=16.9
Q ss_pred CCcEEEEECCCCCcHHHHH
Q 011717 446 KDQLFCLLGPNGAGKTTTI 464 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~ 464 (479)
.|+.+.+.||.|+|||+..
T Consensus 38 ~~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIA 56 (720)
T ss_dssp GTCEEEEECCGGGCHHHHH
T ss_pred CCCcEEEEcCCccHHHHHH
Confidence 4788999999999999976
No 380
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=24.55 E-value=31 Score=35.31 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=21.8
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717 448 QLFCLLGPNGAGKTTTISCLTGITPV 473 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~mLtG~~~p 473 (479)
=++.+=|.-||||+|+++.|+.-+.|
T Consensus 44 vlIvfEG~D~AGKg~~Ik~l~~~l~p 69 (500)
T 3czp_A 44 VIILINGIEGAGKGETVKLLNEWMDP 69 (500)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHSCG
T ss_pred EEEEEeCcCCCCHHHHHHHHHHhcCc
Confidence 36667799999999999999986655
No 381
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=24.41 E-value=28 Score=31.20 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=15.5
Q ss_pred CCcEEEEECCCCCcHHHHHH
Q 011717 446 KDQLFCLLGPNGAGKTTTIS 465 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~~ 465 (479)
+|+-+.+.++.|+|||.++-
T Consensus 66 ~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 66 KGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp TTCCEEECCCSSHHHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHH
Confidence 44557788999999998753
No 382
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=24.39 E-value=27 Score=35.29 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=18.4
Q ss_pred EEEEeCCcEEEEECCCCCcH
Q 011717 441 WVNIAKDQLFCLLGPNGAGK 460 (479)
Q Consensus 441 sl~v~~gei~~LLG~NGAGK 460 (479)
++.+.+|||+++-|.|..|+
T Consensus 94 ~~slFPGQIVav~G~N~~G~ 113 (460)
T 3flo_A 94 ELSFFLGQIVAFKGKNANGD 113 (460)
T ss_dssp CEEECTTCEEEEEEECSSSS
T ss_pred ceeecCCCEEEEEEEcCCCC
Confidence 48899999999999999886
No 383
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=23.70 E-value=32 Score=30.24 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=14.5
Q ss_pred CcEEEEECCCCCcHHHHHH
Q 011717 447 DQLFCLLGPNGAGKTTTIS 465 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~ 465 (479)
|+-..+.++.|+|||..+-
T Consensus 41 ~~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 41 GESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp TCCEEEECCSSHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHH
Confidence 3445678999999999643
No 384
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=23.21 E-value=45 Score=31.81 Aligned_cols=21 Identities=38% Similarity=0.420 Sum_probs=17.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHhC
Q 011717 447 DQLFCLLGPNGAGKTTTISCLTG 469 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~~mLtG 469 (479)
..++|+-|-| |||||=.||.-
T Consensus 108 ~~~IaVTGTn--GKTTTt~ll~~ 128 (326)
T 3eag_A 108 HWVLGVAGTH--GKTTTASMLAW 128 (326)
T ss_dssp SEEEEEESSS--CHHHHHHHHHH
T ss_pred CCEEEEECCC--CHHHHHHHHHH
Confidence 3588899998 69999999864
No 385
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=22.52 E-value=36 Score=31.65 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=17.5
Q ss_pred CcEEEEEC---CCCCcHHHHHHHHhCC
Q 011717 447 DQLFCLLG---PNGAGKTTTISCLTGI 470 (479)
Q Consensus 447 gei~~LLG---~NGAGKTTt~~mLtG~ 470 (479)
+.++++.+ .-|.||||+--.|+..
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~ 60 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYL 60 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHH
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHH
Confidence 34566665 7899999998777643
No 386
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=22.06 E-value=52 Score=29.60 Aligned_cols=19 Identities=21% Similarity=0.343 Sum_probs=14.7
Q ss_pred CCcEEEEECCCCCcHHHHH
Q 011717 446 KDQLFCLLGPNGAGKTTTI 464 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~ 464 (479)
+|+-+.+.++.|+|||..+
T Consensus 59 ~~~~~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 59 EHRDIMACAQTGSGKTAAF 77 (253)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred CCCCEEEECCCCChHHHHH
Confidence 3455678899999999864
No 387
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=21.99 E-value=31 Score=33.14 Aligned_cols=12 Identities=42% Similarity=0.706 Sum_probs=11.1
Q ss_pred ECCCCCcHHHHH
Q 011717 453 LGPNGAGKTTTI 464 (479)
Q Consensus 453 LG~NGAGKTTt~ 464 (479)
-|..|+|||-||
T Consensus 84 YGqTGSGKTyTm 95 (325)
T 1bg2_A 84 YGQTSSGKTHTM 95 (325)
T ss_dssp ECSTTSSHHHHH
T ss_pred ECCCCCCCceEe
Confidence 599999999997
No 388
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=21.90 E-value=29 Score=36.90 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=18.7
Q ss_pred EeCCcEEEEECCCCCcHHHHHH
Q 011717 444 IAKDQLFCLLGPNGAGKTTTIS 465 (479)
Q Consensus 444 v~~gei~~LLG~NGAGKTTt~~ 465 (479)
+.+|+.+.+.++.|+|||+.+-
T Consensus 229 L~~~~~vlv~ApTGSGKT~a~~ 250 (666)
T 3o8b_A 229 PQSFQVAHLHAPTGSGKSTKVP 250 (666)
T ss_dssp CSSCEEEEEECCTTSCTTTHHH
T ss_pred HHcCCeEEEEeCCchhHHHHHH
Confidence 3478999999999999998764
No 389
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=21.78 E-value=37 Score=30.48 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=15.3
Q ss_pred CCcEEEEECCCCCcHHHHH
Q 011717 446 KDQLFCLLGPNGAGKTTTI 464 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~ 464 (479)
+|+-..+.++.|+|||..+
T Consensus 65 ~g~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 65 SGLDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp HTCCEEEEECTTSCHHHHH
T ss_pred CCCCEEEECCCcCHHHHHH
Confidence 4566678899999999874
No 390
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=21.70 E-value=58 Score=30.69 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=15.0
Q ss_pred cEEEEECCCCCcHHHHHHH
Q 011717 448 QLFCLLGPNGAGKTTTISC 466 (479)
Q Consensus 448 ei~~LLG~NGAGKTTt~~m 466 (479)
+-+.+.++.|+|||+.+-+
T Consensus 45 ~~~l~~~~TGsGKT~~~~~ 63 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAI 63 (367)
T ss_dssp SEEEEECCSSSSHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 4566789999999997543
No 391
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=21.52 E-value=43 Score=32.37 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.1
Q ss_pred CcEEEEECCCCCcHHHHH
Q 011717 447 DQLFCLLGPNGAGKTTTI 464 (479)
Q Consensus 447 gei~~LLG~NGAGKTTt~ 464 (479)
++-+.+.+|.|+|||..+
T Consensus 64 ~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCchHHHHH
Confidence 466778899999999874
No 392
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=21.48 E-value=20 Score=38.32 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=17.6
Q ss_pred eCCcEEEEECCCCCcHHHHH
Q 011717 445 AKDQLFCLLGPNGAGKTTTI 464 (479)
Q Consensus 445 ~~gei~~LLG~NGAGKTTt~ 464 (479)
..|+.+.+.||.|+|||+..
T Consensus 38 ~~~~~~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 38 FSGKNLLLAMPTAAGKTLLA 57 (702)
T ss_dssp TTCSCEEEECSSHHHHHHHH
T ss_pred hCCCcEEEEcCCccHHHHHH
Confidence 35788899999999999986
No 393
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=20.83 E-value=34 Score=32.93 Aligned_cols=12 Identities=58% Similarity=0.869 Sum_probs=11.1
Q ss_pred ECCCCCcHHHHH
Q 011717 453 LGPNGAGKTTTI 464 (479)
Q Consensus 453 LG~NGAGKTTt~ 464 (479)
-|..|+|||-||
T Consensus 87 YGqTGSGKTyTm 98 (330)
T 2h58_A 87 YGQTGAGKTYTM 98 (330)
T ss_dssp ESSTTSSHHHHH
T ss_pred ECCCCCCCcEEE
Confidence 599999999997
No 394
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=20.59 E-value=61 Score=30.44 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=18.4
Q ss_pred CCcEEEEECCC-CCcHHHHHHHHhC
Q 011717 446 KDQLFCLLGPN-GAGKTTTISCLTG 469 (479)
Q Consensus 446 ~gei~~LLG~N-GAGKTTt~~mLtG 469 (479)
++.++++.|.. |.||||+--.|+-
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~ 127 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAA 127 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHH
Confidence 34688888874 8999999777654
No 395
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=20.05 E-value=53 Score=31.86 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=15.2
Q ss_pred CCcEEEEECCCCCcHHHHH
Q 011717 446 KDQLFCLLGPNGAGKTTTI 464 (479)
Q Consensus 446 ~gei~~LLG~NGAGKTTt~ 464 (479)
+|+-+.+.++.|+|||..+
T Consensus 51 ~~~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 51 EKRDLMACAQTGSGKTAAF 69 (417)
T ss_dssp TTCCEEEECCTTSCHHHHH
T ss_pred cCCCEEEEcCCCCHHHHHH
Confidence 4556678899999999854
Done!