Your job contains 1 sequence.
>011718
MADNTEVEERVDLDEDDYMEEIDDDPEEQLDDDGEVGRDGNVKQNDEDEEYDAETSKEDQ
SPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDL
RDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS
ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACA
DYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKEL
FQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTN
KRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAG
MHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPRRVERGPGGRGASSGGSDGSSGRRYRPY
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 011718
(479 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2134638 - symbol:LIF2 "LHP1-Interacting Factor... 1351 5.1e-138 1
TAIR|locus:2083248 - symbol:AT3G52660 species:3702 "Arabi... 957 2.9e-96 1
UNIPROTKB|I3LKZ4 - symbol:HNRNPR "Uncharacterized protein... 433 9.6e-41 1
ZFIN|ZDB-GENE-030131-3104 - symbol:syncripl "synaptotagmi... 432 1.2e-40 1
RGD|631348 - symbol:Hnrnpr "heterogeneous nuclear ribonuc... 433 1.3e-40 1
UNIPROTKB|Q566E4 - symbol:Hnrnpr "Heterogeneous nuclear r... 433 1.3e-40 1
UNIPROTKB|A3KMV6 - symbol:HNRNPR "Uncharacterized protein... 433 1.3e-40 1
UNIPROTKB|E2RE36 - symbol:HNRNPR "Uncharacterized protein... 433 1.3e-40 1
UNIPROTKB|O43390 - symbol:HNRNPR "Heterogeneous nuclear r... 433 1.3e-40 1
UNIPROTKB|E1BZR1 - symbol:HNRNPR "Uncharacterized protein... 434 1.6e-40 1
UNIPROTKB|F6XIK8 - symbol:SYNCRIP "Uncharacterized protei... 426 5.3e-40 1
DICTYBASE|DDB_G0282293 - symbol:rnpA "putative RNA bindin... 376 5.4e-40 2
RGD|1305683 - symbol:Syncrip "synaptotagmin binding, cyto... 425 6.8e-40 1
UNIPROTKB|Q7TP47 - symbol:Syncrip "Heterogeneous nuclear ... 425 6.8e-40 1
UNIPROTKB|O60506 - symbol:SYNCRIP "Heterogeneous nuclear ... 426 7.2e-40 1
UNIPROTKB|F2Z5D4 - symbol:SYNCRIP "Uncharacterized protei... 426 7.8e-40 1
UNIPROTKB|Q2L7G6 - symbol:HNRNPR "Heterogeneous nuclear r... 424 8.7e-40 1
UNIPROTKB|F1NWI9 - symbol:SYNCRIP "Uncharacterized protei... 425 9.2e-40 1
MGI|MGI:1891690 - symbol:Syncrip "synaptotagmin binding, ... 425 9.4e-40 1
UNIPROTKB|F1MCT8 - symbol:SYNCRIP "Uncharacterized protei... 426 9.6e-40 1
UNIPROTKB|F1LUZ6 - symbol:Hnrnpr "Protein Hnrnpr" species... 421 1.8e-39 1
ZFIN|ZDB-GENE-030131-4862 - symbol:syncrip "synaptotagmin... 421 6.6e-39 1
FB|FBgn0038826 - symbol:Syp "Syncrip" species:7227 "Droso... 420 9.7e-39 1
ZFIN|ZDB-GENE-061013-298 - symbol:rbm46 "RNA binding moti... 411 2.1e-38 1
UNIPROTKB|E1BVJ9 - symbol:RBM47 "Uncharacterized protein"... 391 3.2e-38 2
UNIPROTKB|E1B7G9 - symbol:A1CF "Uncharacterized protein" ... 401 3.6e-37 1
ZFIN|ZDB-GENE-030131-9612 - symbol:si:ch211-241e15.2 "si:... 383 6.9e-37 2
UNIPROTKB|F1SD00 - symbol:A1CF "Uncharacterized protein" ... 396 8.0e-37 1
ZFIN|ZDB-GENE-060824-3 - symbol:a1cf "apobec1 complementa... 394 2.1e-36 1
UNIPROTKB|E1BQR8 - symbol:A1CF "Uncharacterized protein" ... 392 2.1e-36 1
MGI|MGI:1917115 - symbol:A1cf "APOBEC1 complementation fa... 394 2.4e-36 1
UNIPROTKB|E2QWK5 - symbol:A1CF "Uncharacterized protein" ... 393 2.9e-36 1
UNIPROTKB|F8W9F8 - symbol:A1CF "APOBEC1 complementation f... 392 3.5e-36 1
UNIPROTKB|Q5R9H4 - symbol:A1CF "APOBEC1 complementation f... 392 3.5e-36 1
UNIPROTKB|Q9NQ94 - symbol:A1CF "APOBEC1 complementation f... 392 4.0e-36 1
RGD|619834 - symbol:A1cf "APOBEC1 complementation factor"... 392 4.0e-36 1
UNIPROTKB|F1LNL0 - symbol:A1cf "APOBEC1 complementation f... 392 4.0e-36 1
UNIPROTKB|F1Q212 - symbol:RBM47 "RNA-binding protein 47" ... 389 8.5e-36 1
UNIPROTKB|Q9XSR3 - symbol:RBM47 "RNA-binding protein 47" ... 389 8.5e-36 1
UNIPROTKB|E1BB24 - symbol:RBM46 "Uncharacterized protein"... 383 1.9e-35 1
UNIPROTKB|E2R8F4 - symbol:RBM46 "Uncharacterized protein"... 382 2.4e-35 1
UNIPROTKB|E2RTF9 - symbol:RBM46 "Uncharacterized protein"... 382 2.4e-35 1
UNIPROTKB|B3KWU8 - symbol:RBM46 "Putative uncharacterized... 382 2.4e-35 1
UNIPROTKB|B4DZ27 - symbol:RBM46 "Probable RNA-binding pro... 382 2.4e-35 1
UNIPROTKB|Q8TBY0 - symbol:RBM46 "Probable RNA-binding pro... 382 2.4e-35 1
UNIPROTKB|F1RYR7 - symbol:RBM46 "Uncharacterized protein"... 382 2.4e-35 1
MGI|MGI:3645057 - symbol:Rbm46 "RNA binding motif protein... 382 2.4e-35 1
RGD|1560205 - symbol:Rbm46 "RNA binding motif protein 46"... 382 2.4e-35 1
UNIPROTKB|F6RYN2 - symbol:RBM47 "Uncharacterized protein"... 382 5.4e-35 1
UNIPROTKB|F1S4H0 - symbol:RBM47 "Uncharacterized protein"... 382 5.4e-35 1
UNIPROTKB|D6R9D6 - symbol:RBM47 "RNA-binding protein 47" ... 378 6.5e-35 1
UNIPROTKB|B7Z8Z7 - symbol:RBM47 "cDNA FLJ51456, moderatel... 378 8.2e-35 1
UNIPROTKB|E2QVD3 - symbol:SYNCRIP "Uncharacterized protei... 381 9.8e-35 1
TAIR|locus:2146564 - symbol:AT5G28390 species:3702 "Arabi... 310 1.3e-34 2
MGI|MGI:2384294 - symbol:Rbm47 "RNA binding motif protein... 378 1.5e-34 1
UNIPROTKB|A0AV96 - symbol:RBM47 "RNA-binding protein 47" ... 378 1.6e-34 1
RGD|1359713 - symbol:Rbm47 "RNA binding motif protein 47"... 377 1.9e-34 1
UNIPROTKB|E1BV69 - symbol:RBM46 "Uncharacterized protein"... 371 3.6e-34 1
WB|WBGene00002000 - symbol:hrp-2 species:6239 "Caenorhabd... 369 1.9e-33 1
TAIR|locus:2042366 - symbol:AT2G44710 species:3702 "Arabi... 357 1.1e-31 1
UNIPROTKB|F1NJQ8 - symbol:RBM46 "Uncharacterized protein"... 321 7.1e-29 1
UNIPROTKB|E7ETM7 - symbol:HNRNPR "Heterogeneous nuclear r... 304 8.1e-27 1
UNIPROTKB|F1LM17 - symbol:F1LM17 "Uncharacterized protein... 281 2.4e-23 1
UNIPROTKB|Q5T0W7 - symbol:A1CF "APOBEC1 complementation f... 256 7.3e-22 1
UNIPROTKB|D6RBS9 - symbol:RBM47 "RNA-binding protein 47" ... 240 5.4e-20 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 246 3.3e-18 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 246 3.3e-18 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 245 4.3e-18 1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 245 4.4e-18 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 243 6.9e-18 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 243 7.7e-18 1
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 240 1.6e-17 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 232 2.4e-17 1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 234 2.9e-17 1
DICTYBASE|DDB_G0291486 - symbol:DDB_G0291486 "putative sp... 195 3.2e-17 2
UNIPROTKB|I3LRH2 - symbol:LOC100737210 "Uncharacterized p... 215 5.7e-17 2
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 225 1.2e-16 1
UNIPROTKB|P19338 - symbol:NCL "Nucleolin" species:9606 "H... 211 1.2e-16 2
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 231 1.5e-16 1
RGD|3153 - symbol:Ncl "nucleolin" species:10116 "Rattus n... 213 2.5e-16 3
UNIPROTKB|Q5RF26 - symbol:NCL "Nucleolin" species:9601 "P... 211 2.5e-16 2
UNIPROTKB|Q5U328 - symbol:Ncl "Nucleolin, isoform CRA_c" ... 213 2.6e-16 3
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 222 2.6e-16 2
UNIPROTKB|Q4R4J7 - symbol:NCL "Nucleolin" species:9541 "M... 211 3.2e-16 2
ZFIN|ZDB-GENE-110408-50 - symbol:celf3b "cugbp, Elav-like... 183 3.3e-16 2
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 228 4.2e-16 1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 230 4.7e-16 2
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 227 5.3e-16 1
UNIPROTKB|F1P336 - symbol:NCL "Nucleolin" species:9031 "G... 214 5.4e-16 2
UNIPROTKB|F1NU40 - symbol:NCL "Nucleolin" species:9031 "G... 214 5.5e-16 2
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 227 5.8e-16 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 229 6.1e-16 2
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 229 6.1e-16 2
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 226 7.4e-16 2
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 225 9.0e-16 1
ZFIN|ZDB-GENE-000501-2 - symbol:celf3a "cugbp, Elav-like ... 177 9.1e-16 2
UNIPROTKB|P15771 - symbol:NCL "Nucleolin" species:9031 "G... 212 9.6e-16 2
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 226 1.1e-15 2
UNIPROTKB|E1B8K6 - symbol:NCL "Uncharacterized protein" s... 201 1.2e-15 2
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 226 1.4e-15 2
WARNING: Descriptions of 1210 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 1351 (480.6 bits), Expect = 5.1e-138, P = 5.1e-138
Identities = 257/397 (64%), Positives = 315/397 (79%)
Query: 40 GNVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLAL 99
G+ K D E+ E +++D + HI+ E A +D++K + I ++++EK+ LL+L
Sbjct: 60 GDTKGGDM-EDVQEEIAEDDDN------HIDIETA-DDDEKPPSPIDDEDREKYSHLLSL 111
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PPHGSEVFIGGLP+D EEDLRDLCE IGE+FEV L+KD+DSG+SKG+AFVAF++K+VA+
Sbjct: 112 PPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQ 171
Query: 160 RAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKD 219
+AI+EL SK+FKGKTIRCS+SET NRLFIGN+PK+WTE EFRKVIEDVGPGV+ IELIKD
Sbjct: 172 KAIEELHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKD 231
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
P +RNRGFAFVLYYNNACADYSRQKM +NFKL+GN PTV+WA+PKS+P+HSAAAA Q
Sbjct: 232 PTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAA-Q 290
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
VKALYVKN+PENT+T+QLKELFQRHGEVTK+VTPPGK GKRDFGF+HYAERSSALKA+KD
Sbjct: 291 VKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKD 350
Query: 340 TEKYEIDGQVLEVALARPQTNKRTE-GVYSCAAGVHPSGLPHAGYGSFAGTAYXXXXXXX 398
TE+YE++GQ LEV LA+PQ ++ + YS A P+ H +G FA Y
Sbjct: 351 TERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAGL 410
Query: 399 XXXXXXXXQQPMIYGRGQMPAGMHMVPMVLPDGRIGY 435
QPMIYGRG MP GM MVPM+LPDGR+GY
Sbjct: 411 GIAGSFS--QPMIYGRGAMPTGMQMVPMLLPDGRVGY 445
>TAIR|locus:2083248 [details] [associations]
symbol:AT3G52660 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 eggNOG:NOG258596
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 EMBL:AL353912
KO:K13161 HOGENOM:HOG000243749 ProtClustDB:CLSN2698006
EMBL:BT029158 EMBL:AK176325 EMBL:AK176862 IPI:IPI00534328
PIR:T49019 RefSeq:NP_001030849.1 RefSeq:NP_190834.1
UniGene:At.48763 ProteinModelPortal:Q9LXJ8 SMR:Q9LXJ8 PaxDb:Q9LXJ8
PRIDE:Q9LXJ8 EnsemblPlants:AT3G52660.1 EnsemblPlants:AT3G52660.2
GeneID:824432 KEGG:ath:AT3G52660 TAIR:At3g52660 InParanoid:Q9LXJ8
OMA:HDSMESE PhylomeDB:Q9LXJ8 ArrayExpress:Q9LXJ8
Genevestigator:Q9LXJ8 Uniprot:Q9LXJ8
Length = 471
Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
Identities = 186/396 (46%), Positives = 269/396 (67%)
Query: 46 DEDEEYDAETSKE-DQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGS 104
+E+ EY+ +E ++ + E+ E+ED A+ E+EK++H +LLALPPHGS
Sbjct: 34 EEEVEYEEVEEEEIEEIEEEIEEEVEVEEEEEEEDA-VATEEEEEKKRHVELLALPPHGS 92
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EV++GG+P DA+E DL+ C IGEV EV ++++KDSG+ KG+AFV FRSK++A AID
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPS 224
L + DF+GK I+CS ++ +RLF+GNVP++W E + +K +GPGV +EL K+PQ
Sbjct: 153 LNNTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNMG 212
Query: 225 RNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALY 284
RNRGFAF+ YYN+ACA+YS+QKM++ +FKLD N PTVSWAE +S ++A SQVKALY
Sbjct: 213 RNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSGGGGDSSA-SQVKALY 271
Query: 285 VKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD--FGFIHYAERSSALKAIKDTEK 342
+KNLP + T ++LK LF+ HG++ KVV PP K GK D +GF+HYAER+S ++A+K+TE+
Sbjct: 272 IKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTER 331
Query: 343 YEIDGQVLEVALARPQTNKRTEG--VYSCAAG-VHPSGLPHAGYGSFAGTAYXXXXXXXX 399
YEIDG +L+ LA+PQ +++T V + + P+ P YG A + +
Sbjct: 332 YEIDGHMLDCTLAKPQADQKTNTNTVQNVQKSQLQPNYPPLLSYG-MAPSPFGALGGFGA 390
Query: 400 XXXXXXXQQPMIYGRGQMPAGMHMVPMVLPDGRIGY 435
QP+++ G GM M+P++LPDGRIGY
Sbjct: 391 SAYS----QPLMHAGGHAAGGMSMMPIMLPDGRIGY 422
>UNIPROTKB|I3LKZ4 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YYPPPRM Ensembl:ENSSSCT00000026418 Uniprot:I3LKZ4
Length = 599
Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 94/267 (35%), Positives = 158/267 (59%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELC-SKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +LC S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAV-KLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILY 279
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 280 HQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA- 338
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
+VK L+V+NL T + L++ F G++ +V K K D+ F+H+ +R +A+KA+
Sbjct: 339 -KVKVLFVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAM 391
Query: 338 KDTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 392 DEMNGKEIEGEEIEIVLAKPPDKKRKE 418
>ZFIN|ZDB-GENE-030131-3104 [details] [associations]
symbol:syncripl "synaptotagmin binding,
cytoplasmic RNA interacting protein, like" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-3104
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GO:GO:0003676 HSSP:P09651
EMBL:BC046902 IPI:IPI00513002 RefSeq:NP_955973.1 UniGene:Dr.78854
ProteinModelPortal:Q802X5 SMR:Q802X5 STRING:Q802X5 GeneID:324384
KEGG:dre:324384 CTD:324384 InParanoid:Q802X5 NextBio:20808747
Uniprot:Q802X5
Length = 560
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 94/267 (35%), Positives = 158/267 (59%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D SG ++G+AFV F +KE A+
Sbjct: 159 PTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQ 218
Query: 160 RAIDELCSKDF--KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
+A+ +LC+ + GK I +S NNRLF+G++PKS T+ + + V G++ + L
Sbjct: 219 KAV-KLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKVTEGLNDVILY 277
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 HQPDDKKKNRGFCFLGYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA- 336
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
+VK L+V+NL T + L++ F + G++ +V K K D+ FIH+ ER A+KA+
Sbjct: 337 -KVKVLFVRNLASTVTEELLEKTFCQFGKLERV-----KKLK-DYAFIHFEERDGAVKAL 389
Query: 338 KDTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 AELHGKDLEGEPIEIVFAKPPDQKRKE 416
>RGD|631348 [details] [associations]
symbol:Hnrnpr "heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:631348 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0030529 HSSP:O08583
IPI:IPI00194562 UniGene:Rn.195396 EMBL:AY184814
ProteinModelPortal:Q811S1 SMR:Q811S1 STRING:Q811S1 PRIDE:Q811S1
UCSC:RGD:631348 InParanoid:Q811S1 Genevestigator:Q811S1
Uniprot:Q811S1
Length = 632
Score = 433 (157.5 bits), Expect = 1.3e-40, P = 1.3e-40
Identities = 94/267 (35%), Positives = 158/267 (59%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEEAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELC-SKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +LC S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAV-KLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILY 279
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 280 HQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA- 338
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
+VK L+V+NL T + L++ F G++ +V K K D+ F+H+ +R +A+KA+
Sbjct: 339 -KVKVLFVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAM 391
Query: 338 KDTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 392 DEMNGKEIEGEEIEIVLAKPPDKKRKE 418
>UNIPROTKB|Q566E4 [details] [associations]
symbol:Hnrnpr "Heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:631348 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0071013 OrthoDB:EOG4FN4HM
HOGENOM:HOG000186082 CTD:10236 KO:K13161 EMBL:BC093598
IPI:IPI00194562 RefSeq:NP_783193.2 UniGene:Rn.195396 SMR:Q566E4
STRING:Q566E4 Ensembl:ENSRNOT00000016001 GeneID:319110
KEGG:rno:319110 InParanoid:Q566E4 NextBio:672099
Genevestigator:Q566E4 Uniprot:Q566E4
Length = 632
Score = 433 (157.5 bits), Expect = 1.3e-40, P = 1.3e-40
Identities = 94/267 (35%), Positives = 158/267 (59%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELC-SKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +LC S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAV-KLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILY 279
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 280 HQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA- 338
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
+VK L+V+NL T + L++ F G++ +V K K D+ F+H+ +R +A+KA+
Sbjct: 339 -KVKVLFVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAM 391
Query: 338 KDTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 392 DEMNGKEIEGEEIEIVLAKPPDKKRKE 418
>UNIPROTKB|A3KMV6 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 GO:GO:0071013
OrthoDB:EOG4FN4HM HOGENOM:HOG000186082 CTD:10236 KO:K13161
OMA:YYPPPRM EMBL:DAAA02006438 EMBL:BC133299 IPI:IPI00704335
RefSeq:NP_001076077.1 UniGene:Bt.3687 SMR:A3KMV6 STRING:A3KMV6
Ensembl:ENSBTAT00000022054 GeneID:512479 KEGG:bta:512479
InParanoid:A3KMV6 NextBio:20870409 Uniprot:A3KMV6
Length = 633
Score = 433 (157.5 bits), Expect = 1.3e-40, P = 1.3e-40
Identities = 94/267 (35%), Positives = 158/267 (59%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELC-SKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +LC S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAV-KLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILY 279
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 280 HQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA- 338
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
+VK L+V+NL T + L++ F G++ +V K K D+ F+H+ +R +A+KA+
Sbjct: 339 -KVKVLFVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAM 391
Query: 338 KDTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 392 DEMNGKEIEGEEIEIVLAKPPDKKRKE 418
>UNIPROTKB|E2RE36 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 CTD:10236 KO:K13161 OMA:YYPPPRM EMBL:AAEX03001757
RefSeq:XP_852945.1 ProteinModelPortal:E2RE36
Ensembl:ENSCAFT00000021145 GeneID:478192 KEGG:cfa:478192
Uniprot:E2RE36
Length = 633
Score = 433 (157.5 bits), Expect = 1.3e-40, P = 1.3e-40
Identities = 94/267 (35%), Positives = 158/267 (59%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELC-SKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +LC S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAV-KLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILY 279
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 280 HQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA- 338
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
+VK L+V+NL T + L++ F G++ +V K K D+ F+H+ +R +A+KA+
Sbjct: 339 -KVKVLFVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAM 391
Query: 338 KDTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 392 DEMNGKEIEGEEIEIVLAKPPDKKRKE 418
>UNIPROTKB|O43390 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0006397 "mRNA processing" evidence=NAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Reactome:REACT_1675
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 HOGENOM:HOG000186082
EMBL:AF000364 EMBL:AL109936 EMBL:BC001449 IPI:IPI00012074
IPI:IPI00941649 PIR:T02673 RefSeq:NP_001095867.1
RefSeq:NP_001095868.1 RefSeq:NP_005817.1 UniGene:Hs.373763 PDB:2DK2
PDBsum:2DK2 ProteinModelPortal:O43390 SMR:O43390 IntAct:O43390
MINT:MINT-2796101 STRING:O43390 PhosphoSite:O43390 PaxDb:O43390
PeptideAtlas:O43390 PRIDE:O43390 DNASU:10236
Ensembl:ENST00000302271 Ensembl:ENST00000374612
Ensembl:ENST00000374616 GeneID:10236 KEGG:hsa:10236 UCSC:uc001bgp.4
UCSC:uc001bgr.4 CTD:10236 GeneCards:GC01M023630 HGNC:HGNC:5047
HPA:CAB011687 HPA:HPA026092 MIM:607201 neXtProt:NX_O43390
PharmGKB:PA162391459 KO:K13161 OMA:YYPPPRM PhylomeDB:O43390
ChiTaRS:HNRNPR EvolutionaryTrace:O43390 GenomeRNAi:10236
NextBio:38770 PMAP-CutDB:O43390 ArrayExpress:O43390 Bgee:O43390
CleanEx:HS_HNRNPR Genevestigator:O43390 GermOnline:ENSG00000125944
Uniprot:O43390
Length = 633
Score = 433 (157.5 bits), Expect = 1.3e-40, P = 1.3e-40
Identities = 94/267 (35%), Positives = 158/267 (59%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELC-SKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +LC S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAV-KLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILY 279
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 280 HQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA- 338
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
+VK L+V+NL T + L++ F G++ +V K K D+ F+H+ +R +A+KA+
Sbjct: 339 -KVKVLFVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAM 391
Query: 338 KDTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 392 DEMNGKEIEGEEIEIVLAKPPDKKRKE 418
>UNIPROTKB|E1BZR1 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 OMA:YYPPPRM EMBL:AADN02051307 EMBL:AADN02051308
IPI:IPI00597410 ProteinModelPortal:E1BZR1
Ensembl:ENSGALT00000001185 ArrayExpress:E1BZR1 Uniprot:E1BZR1
Length = 661
Score = 434 (157.8 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 99/271 (36%), Positives = 162/271 (59%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F SK+ A+
Sbjct: 189 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQ 248
Query: 160 RAIDELCSK-DFK-GKTIRCSMSETNNRLFIGNVPKSWTEK----EFRKVIEDVGPGVDT 213
A+ +LC + + GK + +S NNRLF+G++PK+ T++ EF KV E + VD
Sbjct: 249 EAV-KLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFNKVTEGL---VDV 304
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHS 273
I L P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD
Sbjct: 305 I-LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPE 363
Query: 274 AAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSA 333
A +VK L+V+NL T + L++ F G++ +V K K D+ F+H+ +R +A
Sbjct: 364 VMA--KVKVLFVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAA 415
Query: 334 LKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+KA+ + EI+G+ +E+ LA+P KR E
Sbjct: 416 VKAMNEMNGKEIEGEEIEIVLAKPPDKKRKE 446
>UNIPROTKB|F6XIK8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:10492 KO:K13160 OMA:GNMATEH Ensembl:ENSCAFT00000004869
EMBL:AAEX03008501 RefSeq:XP_003431698.1 ProteinModelPortal:F6XIK8
GeneID:474986 KEGG:cfa:474986 Uniprot:F6XIK8
Length = 562
Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
Identities = 91/266 (34%), Positives = 156/266 (58%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V K K D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>DICTYBASE|DDB_G0282293 [details] [associations]
symbol:rnpA "putative RNA binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0282293 GO:GO:0000166
EMBL:AAFI02000047 GenomeReviews:CM000152_GR Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AY392444 RefSeq:XP_640243.1
ProteinModelPortal:Q6TMI9 EnsemblProtists:DDB0214833 GeneID:8623503
KEGG:ddi:DDB_G0282293 InParanoid:Q6TMI9 OMA:LTVNWSD Uniprot:Q6TMI9
Length = 551
Score = 376 (137.4 bits), Expect = 5.4e-40, Sum P(2) = 5.4e-40
Identities = 84/272 (30%), Positives = 144/272 (52%)
Query: 45 NDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGS 104
ND+ + S N +T ++D D + + + Q A +
Sbjct: 37 NDDIKSTSTSISTNGSPESKNKKLPSTSTLIKDGDNNISINNNNNSISKSQRNA----NN 92
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGE--VFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
E+F GG+ K +EE+L ++ + V E+ L+KDK +GESKGF FV F + + + I
Sbjct: 93 EIFFGGVNKTVNEEELLEIFNENSDNNVLEIRLMKDKLTGESKGFGFVLFNDRSMCRNVI 152
Query: 163 DELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
D+L K KGK I SE +LFIGN+PK ++++F + + G+++I+ + P
Sbjct: 153 DKLNGKSIKGKIIEVKQSENKRKLFIGNLPKDLSKEQFISIFNEKTEGIESIDFLMSPDQ 212
Query: 223 PSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG--NTPTVSWAEPKST---PDHSAAAA 277
P++NRGFAF+ Y ++ AD +R+ +T++ KL T TV+W++P T P +
Sbjct: 213 PNKNRGFAFIEYQDHYLADTARRILTASTVKLGDYITTLTVNWSDPDPTTLDPQNDPLEN 272
Query: 278 SQVKALYVKNLPEN-----TTTKQLKELFQRH 304
++KA+Y++NLP N + TK + ++ Q +
Sbjct: 273 KEIKAIYIRNLPLNHRNDLSITKIINDIIQEN 304
Score = 109 (43.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 42/172 (24%), Positives = 74/172 (43%)
Query: 163 DELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVI-EDVGPGVDTIELIKDPQ 221
D S + +I S NN +F G V K+ E+E ++ E+ V I L+KD +
Sbjct: 71 DNNISINNNNNSISKSQRNANNEIFFGGVNKTVNEEELLEIFNENSDNNVLEIRLMKD-K 129
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
++GF FVL+ + + K+ + K G V +E K +
Sbjct: 130 LTGESKGFGFVLFNDRSMCRNVIDKLNGKSIK--GKIIEVKQSENK-------------R 174
Query: 282 ALYVKNLPENTTTKQLKELFQRHGE----VTKVVTPPGKSGKRDFGFIHYAE 329
L++ NLP++ + +Q +F E + +++P + R F FI Y +
Sbjct: 175 KLFIGNLPKDLSKEQFISIFNEKTEGIESIDFLMSPDQPNKNRGFAFIEYQD 226
Score = 68 (29.0 bits), Expect = 5.4e-40, Sum P(2) = 5.4e-40
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 317 SGKRDFGFIHYAERSSA--LKAIKDTEKYEIDGQVLEVALARPQTNK 361
+ KRD+ F+H R A + I + + I+G+VL ++ A+P K
Sbjct: 356 NSKRDYAFVHLKTRELAEEILRIHEEKPININGKVLSLSFAKPIDKK 402
>RGD|1305683 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO;ISS]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=ISO]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=ISO;ISS] [GO:0071346 "cellular response to
interferon-gamma" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305683 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0005681 GO:GO:0003723
GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160 EMBL:AY325202
IPI:IPI00382222 RefSeq:NP_001041381.1 UniGene:Rn.202606
ProteinModelPortal:Q7TP47 SMR:Q7TP47 IntAct:Q7TP47 STRING:Q7TP47
PhosphoSite:Q7TP47 PRIDE:Q7TP47 Ensembl:ENSRNOT00000041655
GeneID:363113 KEGG:rno:363113 UCSC:RGD:1305683 HOGENOM:HOG000186082
NextBio:682484 ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 91/266 (34%), Positives = 156/266 (58%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 245
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V K K D+ FIH+ ER A+KA++
Sbjct: 246 KVKVLFVRNLANTVTEEILEKSFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKAME 299
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 300 EMNGKDLEGENIEIVFAKPPDQKRKE 325
>UNIPROTKB|Q7TP47 [details] [associations]
symbol:Syncrip "Heterogeneous nuclear ribonucleoprotein Q"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1305683 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
GO:GO:0006397 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005681
GO:GO:0003723 GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160
EMBL:AY325202 IPI:IPI00382222 RefSeq:NP_001041381.1
UniGene:Rn.202606 ProteinModelPortal:Q7TP47 SMR:Q7TP47
IntAct:Q7TP47 STRING:Q7TP47 PhosphoSite:Q7TP47 PRIDE:Q7TP47
Ensembl:ENSRNOT00000041655 GeneID:363113 KEGG:rno:363113
UCSC:RGD:1305683 HOGENOM:HOG000186082 NextBio:682484
ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 91/266 (34%), Positives = 156/266 (58%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 245
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V K K D+ FIH+ ER A+KA++
Sbjct: 246 KVKVLFVRNLANTVTEEILEKSFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKAME 299
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 300 EMNGKDLEGENIEIVFAKPPDQKRKE 325
>UNIPROTKB|O60506 [details] [associations]
symbol:SYNCRIP "Heterogeneous nuclear ribonucleoprotein Q"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071204 "histone pre-mRNA 3'end processing
complex" evidence=ISS] [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IDA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IMP] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0017148 "negative regulation of translation"
evidence=IDA;IMP] [GO:0071346 "cellular response to
interferon-gamma" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005783 GO:GO:0019048 GO:GO:0005654 GO:GO:0017148
GO:GO:0000166 EMBL:CH471051 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0071346 GO:GO:0000398 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204
EMBL:AF155568 EMBL:AF037448 EMBL:AY034481 EMBL:AY034482
EMBL:AY034483 EMBL:AK222776 EMBL:AL136082 EMBL:BC015575
EMBL:BC032643 EMBL:BC040844 IPI:IPI00018140 IPI:IPI00402182
IPI:IPI00402183 IPI:IPI00402184 IPI:IPI00402185
RefSeq:NP_001153145.1 RefSeq:NP_001153146.1 RefSeq:NP_001153147.1
RefSeq:NP_001153148.1 RefSeq:NP_001153149.1 RefSeq:NP_001240700.1
RefSeq:NP_006363.4 UniGene:Hs.571177 PDB:2DGU PDBsum:2DGU
ProteinModelPortal:O60506 SMR:O60506 IntAct:O60506
MINT:MINT-2796763 STRING:O60506 PhosphoSite:O60506 PaxDb:O60506
PRIDE:O60506 DNASU:10492 Ensembl:ENST00000355238
Ensembl:ENST00000369622 GeneID:10492 KEGG:hsa:10492 UCSC:uc003pku.3
UCSC:uc003pkv.3 UCSC:uc003pkw.3 UCSC:uc003pkx.3 UCSC:uc003pkz.2
CTD:10492 GeneCards:GC06M086267 HGNC:HGNC:16918 HPA:CAB010895
neXtProt:NX_O60506 PharmGKB:PA134985065 InParanoid:O60506 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM PhylomeDB:O60506 ChiTaRS:SYNCRIP
EvolutionaryTrace:O60506 GenomeRNAi:10492 NextBio:39814
ArrayExpress:O60506 Bgee:O60506 CleanEx:HS_SYNCRIP
Genevestigator:O60506 GermOnline:ENSG00000135316 Uniprot:O60506
Length = 623
Score = 426 (155.0 bits), Expect = 7.2e-40, P = 7.2e-40
Identities = 91/266 (34%), Positives = 156/266 (58%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V K K D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>UNIPROTKB|F2Z5D4 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:CU076072 Ensembl:ENSSSCT00000004748 Uniprot:F2Z5D4
Length = 627
Score = 426 (155.0 bits), Expect = 7.8e-40, P = 7.8e-40
Identities = 91/266 (34%), Positives = 156/266 (58%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 162 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 221
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 222 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 281
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 282 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 339
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V K K D+ FIH+ ER A+KA++
Sbjct: 340 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKAME 393
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 394 EMNGKDLEGENIEIVFAKPPDQKRKE 419
>UNIPROTKB|Q2L7G6 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003676 GO:GO:0030529 EMBL:AL109936 UniGene:Hs.373763
HGNC:HGNC:5047 ChiTaRS:HNRNPR EMBL:DQ351905 IPI:IPI00856038
SMR:Q2L7G6 STRING:Q2L7G6 Ensembl:ENST00000427764 UCSC:uc010odw.2
Uniprot:Q2L7G6
Length = 595
Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 98/301 (32%), Positives = 167/301 (55%)
Query: 67 SHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGS-EVFIGGLPKDASEEDLRDLCE 125
SH+ + A +T E + K + P +VF+G +P+D E++L L E
Sbjct: 89 SHVQNKSAFLCGVMKTYRQREKQGSKVQESTKGPDEAKIKVFVGKIPRDLYEDELVPLFE 148
Query: 126 PIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC-SKDFK-GKTIRCSMSETN 183
G ++++ L+ D SG+++G+AF+ F KE A+ A+ +LC S + + GK + +S N
Sbjct: 149 KAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAV-KLCDSYEIRPGKHLGVCISVAN 207
Query: 184 NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYS 243
NRLF+G++PK+ T++ + V G+ + L P +NRGF F+ Y ++ A +
Sbjct: 208 NRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQA 267
Query: 244 RQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQR 303
R+++ S K+ GN TV WA+P PD A +VK L+V+NL T + L++ F
Sbjct: 268 RRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA--KVKVLFVRNLATTVTEEILEKSFSE 325
Query: 304 HGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRT 363
G++ +V K K D+ F+H+ +R +A+KA+ + EI+G+ +E+ LA+P KR
Sbjct: 326 FGKLERV-----KKLK-DYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRK 379
Query: 364 E 364
E
Sbjct: 380 E 380
>UNIPROTKB|F1NWI9 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:AADN02002396 IPI:IPI00680994 Ensembl:ENSGALT00000031678
ArrayExpress:F1NWI9 Uniprot:F1NWI9
Length = 622
Score = 425 (154.7 bits), Expect = 9.2e-40, P = 9.2e-40
Identities = 91/266 (34%), Positives = 156/266 (58%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 157 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 216
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 217 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 276
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 277 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-- 334
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V K K D+ FIH+ ER A+KA++
Sbjct: 335 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKAME 388
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 389 EMNGKDLEGENIEIVFAKPPDQKRKE 414
>MGI|MGI:1891690 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISO] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IDA] [GO:0071346
"cellular response to interferon-gamma" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1891690 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0071013 GO:GO:0008143
GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 CTD:10492 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM EMBL:AF093821 EMBL:AB035725
EMBL:AK034845 EMBL:AK077588 EMBL:AK078158 EMBL:BC004001
EMBL:BC041148 EMBL:BC050079 EMBL:BC055863 EMBL:BC058807
EMBL:BC080309 EMBL:BC108363 EMBL:AF408434 IPI:IPI00406117
IPI:IPI00406118 RefSeq:NP_062640.2 RefSeq:NP_062770.1
UniGene:Mm.260545 ProteinModelPortal:Q7TMK9 SMR:Q7TMK9
STRING:Q7TMK9 PhosphoSite:Q7TMK9 REPRODUCTION-2DPAGE:IPI00406117
PaxDb:Q7TMK9 PRIDE:Q7TMK9 Ensembl:ENSMUST00000069221
Ensembl:ENSMUST00000173801 Ensembl:ENSMUST00000174282 GeneID:56403
KEGG:mmu:56403 UCSC:uc009qyo.1 UCSC:uc009qyq.1 InParanoid:Q7TMK9
NextBio:312520 Bgee:Q7TMK9 Genevestigator:Q7TMK9
GermOnline:ENSMUSG00000032423 Uniprot:Q7TMK9
Length = 623
Score = 425 (154.7 bits), Expect = 9.4e-40, P = 9.4e-40
Identities = 91/266 (34%), Positives = 156/266 (58%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V K K D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKSFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>UNIPROTKB|F1MCT8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:DAAA02026516 EMBL:DAAA02026515 IPI:IPI00721347
Ensembl:ENSBTAT00000008774 Uniprot:F1MCT8
Length = 638
Score = 426 (155.0 bits), Expect = 9.6e-40, P = 9.6e-40
Identities = 91/266 (34%), Positives = 156/266 (58%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 173 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 232
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 233 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 292
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 293 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 350
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V K K D+ FIH+ ER A+KA++
Sbjct: 351 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKAME 404
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 405 EMNGKDLEGENIEIVFAKPPDQKRKE 430
>UNIPROTKB|F1LUZ6 [details] [associations]
symbol:Hnrnpr "Protein Hnrnpr" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:631348 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
IPI:IPI00391659 ProteinModelPortal:F1LUZ6
Ensembl:ENSRNOT00000015971 OMA:MENVERT ArrayExpress:F1LUZ6
Uniprot:F1LUZ6
Length = 381
Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 91/260 (35%), Positives = 155/260 (59%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 130 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 189
Query: 160 RAIDELC-SKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +LC S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 190 EAV-KLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILY 248
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 249 HQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA- 307
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
+VK L+V+NL T + L++ F G++ +V K K D+ F+H+ +R +A+KA+
Sbjct: 308 -KVKVLFVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAM 360
Query: 338 KDTEKYEIDGQVLEVALARP 357
+ EI+G+ +E+ LA+P
Sbjct: 361 DEMNGKEIEGEEIEIVLAKP 380
>ZFIN|ZDB-GENE-030131-4862 [details] [associations]
symbol:syncrip "synaptotagmin binding, cytoplasmic
RNA interacting protein" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4862 GO:GO:0000166 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
GO:GO:0003676 EMBL:CT573058 IPI:IPI00504625
Ensembl:ENSDART00000129870 Bgee:F1QY96 Uniprot:F1QY96
Length = 694
Score = 421 (153.3 bits), Expect = 6.6e-39, P = 6.6e-39
Identities = 92/269 (34%), Positives = 158/269 (58%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G+E+F+G +P+D E++L E G ++++ L+ D SG ++G+AF+ F +KE
Sbjct: 220 AQPTVGTEIFVGKIPRDLFEDELVPQFEKAGPIWDLRLMMDPLSGLNRGYAFLTFCTKEA 279
Query: 158 AKRAIDELCSK-DFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
A+ A+ +LC+ + + GK I +S NNRLF+G++PKS T+++ + V G+ +
Sbjct: 280 AQEAV-KLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVI 338
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
L P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD
Sbjct: 339 LYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIEDPDPEVM 398
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALK 335
A +VK L+V+NL + T + L++ F + G + +V K K D+ F+H+ +R A+K
Sbjct: 399 A--KVKVLFVRNLANSVTEEILEKAFGQFGNLERV-----KKLK-DYAFVHFNDRDGAVK 450
Query: 336 AIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+ + E++G+ +E+ A+P KR E
Sbjct: 451 ALTEMNGKELEGEHIEIVFAKPPDQKRKE 479
>FB|FBgn0038826 [details] [associations]
symbol:Syp "Syncrip" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046011 "regulation of oskar mRNA translation" evidence=IMP]
[GO:0007310 "oocyte dorsal/ventral axis specification"
evidence=IMP] [GO:0046843 "dorsal appendage formation"
evidence=IMP] [GO:0035770 "ribonucleoprotein granule" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071011
GO:GO:0000398 UniGene:Dm.11889 GeneID:42460 KEGG:dme:Dmel_CG17838
FlyBase:FBgn0038826 ChiTaRS:CG17838 GenomeRNAi:42460 NextBio:828899
RefSeq:NP_650913.2 ProteinModelPortal:Q7KSA0 SMR:Q7KSA0
STRING:Q7KSA0 EnsemblMetazoa:FBtr0083959 UCSC:CG17838-RB
InParanoid:Q7KSA0 OMA:QPLGTNG Bgee:Q7KSA0 Uniprot:Q7KSA0
Length = 711
Score = 420 (152.9 bits), Expect = 9.7e-39, P = 9.7e-39
Identities = 90/265 (33%), Positives = 159/265 (60%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F ++E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + K GK ++ ++S N RLF+GN+PKS + E + + G+ + +
Sbjct: 219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTM-- 336
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ + +LKE F+++G+V +V K K D+ FIH+ +R SA++A+
Sbjct: 337 SKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV-----KKIK-DYAFIHFEDRDSAVEAM 390
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ EI +EV+LA+P ++K+
Sbjct: 391 RGLNGKEIGASNIEVSLAKPPSDKK 415
>ZFIN|ZDB-GENE-061013-298 [details] [associations]
symbol:rbm46 "RNA binding motif protein 46"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-061013-298
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:BC124720 IPI:IPI00610686 RefSeq:NP_001073493.2
UniGene:Dr.132665 ProteinModelPortal:Q08BH5 SMR:Q08BH5
GeneID:566042 KEGG:dre:566042 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW NextBio:20887996 ArrayExpress:Q08BH5
Uniprot:Q08BH5
Length = 510
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 109/293 (37%), Positives = 165/293 (56%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E G ++E L+ + SGE++G+AFV + ++E A+
Sbjct: 41 PPRGREVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMMEF-SGENRGYAFVMYTTREKAQ 99
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RAI L + + + GK I +S N RLFIG++PK ++E ++ + V GV +++I
Sbjct: 100 RAIQLLDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGV--MDVIV 157
Query: 219 DPQAPSR--NRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A R NRGFAFV Y ++ A +R+K+ F+L G+T V WAEP+ D
Sbjct: 158 YPSAVDRMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELDEETM- 216
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
+V+ LYV+NL +TT + L+ F + G V +V D+ FIH+ R AL
Sbjct: 217 -QRVRVLYVRNLMLSTTEETLRSEFSQLKPGSVERV------KKLTDYAFIHFYNREDAL 269
Query: 335 KAIKDTEKYEIDGQVLEVALARPQT---NKRTEGVYSCAAGVHPSGLPHAGYG 384
A++ IDG +EV LA+P + NKR G +C GV +G GYG
Sbjct: 270 TALESMNGKVIDGSPIEVTLAKPASKDGNKRF-GPRNCHNGVTAAG----GYG 317
>UNIPROTKB|E1BVJ9 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:AADN02031225 IPI:IPI00588745
RefSeq:XP_003641292.1 UniGene:Gga.25965 ProteinModelPortal:E1BVJ9
Ensembl:ENSGALT00000023079 GeneID:770355 KEGG:gga:770355
Uniprot:E1BVJ9
Length = 597
Score = 391 (142.7 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 95/273 (34%), Positives = 146/273 (53%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 125
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
VK LYV+NL TT +K++F G+ K RD+ F+H+ R A+ A+
Sbjct: 245 -VKILYVRNLMIETTEDTIKKVF---GQFNPGCVERVKK-IRDYAFVHFTTREDAIHAMN 299
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTEGVYSCAA 371
+ E++G LEV LA+P +K Y AA
Sbjct: 300 NLNGVELEGSCLEVTLAKP-VDKEQYTRYQKAA 331
Score = 40 (19.1 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 353 ALARPQTNKRTEGVYSCAAGVHPSGLPHAGY 383
A A P+ ++ VYSC P L + GY
Sbjct: 335 AAATPEVTQQPNYVYSC----DPYTLAYYGY 361
>UNIPROTKB|E1B7G9 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
EMBL:DAAA02058697 EMBL:DAAA02058698 IPI:IPI01002256
RefSeq:XP_003587913.1 ProteinModelPortal:E1B7G9
Ensembl:ENSBTAT00000033157 GeneID:100336715 KEGG:bta:100336715
Uniprot:E1B7G9
Length = 595
Score = 401 (146.2 bits), Expect = 3.6e-37, P = 3.6e-37
Identities = 96/266 (36%), Positives = 154/266 (57%)
Query: 98 ALPPH-GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
A PP G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQ 107
Query: 157 VAKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV ++
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VD 165
Query: 216 LIKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHS 273
+I P A ++NRGFAFV Y N+ A +R+K+ +L G+ V WAEP+ D
Sbjct: 166 VIVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED 225
Query: 274 AAAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERS 331
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H+ R
Sbjct: 226 TM--SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFTNRE 277
Query: 332 SALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 278 DAVEAMKALNGKVLDGSPIEVTLAKP 303
>ZFIN|ZDB-GENE-030131-9612 [details] [associations]
symbol:si:ch211-241e15.2 "si:ch211-241e15.2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-9612 GO:GO:0000166
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 EMBL:BX901913
IPI:IPI00886586 Ensembl:ENSDART00000089070 ArrayExpress:F1Q5Y6
Bgee:F1Q5Y6 Uniprot:F1Q5Y6
Length = 601
Score = 383 (139.9 bits), Expect = 6.9e-37, Sum P(2) = 6.9e-37
Identities = 89/259 (34%), Positives = 143/259 (55%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G E+F+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 78 PPRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 136
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK+ +E + + V GV + +
Sbjct: 137 RAVRELNNFEIRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVLDVIVYA 196
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 197 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 255
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
VK LYV+NL T+ + L++ F G+ K RD+ F+H+A R A+ A+
Sbjct: 256 -VKILYVRNLMIETSEEILRQTF---GQFNPGCVERVKK-IRDYAFVHFASRDDAVVAMD 310
Query: 339 DTEKYEIDGQVLEVALARP 357
+ EI+G +EV LA+P
Sbjct: 311 NLNGTEIEGSRIEVTLAKP 329
Score = 37 (18.1 bits), Expect = 6.9e-37, Sum P(2) = 6.9e-37
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 411 IYGRGQMPAGMH 422
+YG G MP H
Sbjct: 544 LYGAGYMPIAAH 555
>UNIPROTKB|F1SD00 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:CT954228
Ensembl:ENSSSCT00000011416 Uniprot:F1SD00
Length = 546
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 95/266 (35%), Positives = 154/266 (57%)
Query: 98 ALPPH-GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
A PP G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQ 107
Query: 157 VAKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV ++
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VD 165
Query: 216 LIKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHS 273
+I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 166 VIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED 225
Query: 274 AAAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERS 331
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H+ R
Sbjct: 226 TM--SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFTNRE 277
Query: 332 SALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 278 DAVEAMKALNGKVLDGSPIEVTLAKP 303
>ZFIN|ZDB-GENE-060824-3 [details] [associations]
symbol:a1cf "apobec1 complementation factor"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001159 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50137 SMART:SM00360
InterPro:IPR014720 ZFIN:ZDB-GENE-060824-3 GO:GO:0000166
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005622
GO:GO:0003725 EMBL:BX248126 IPI:IPI00486366
Ensembl:ENSDART00000010358 Bgee:E7F6B7 Uniprot:E7F6B7
Length = 588
Score = 394 (143.8 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 99/297 (33%), Positives = 160/297 (53%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P GSE+F+G LP+D E++L LCE G+++EV ++ D + G ++G+AFV F +K+ AK
Sbjct: 52 PERGSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFN-GNNRGYAFVTFSTKQEAK 110
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I
Sbjct: 111 NAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGV--LDVIV 168
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y + A +R+K+ +L G+ V WAEP+ D A
Sbjct: 169 YPSAADKAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMA 228
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
VK LYV+NL TT + +++ F + G V +V RD+ F+H+++R A+
Sbjct: 229 T--VKILYVRNLMLPTTEETIEKEFNSIKPGAVERV------KKIRDYAFVHFSQREDAI 280
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAY 391
A+ IDG +EV LA+P +K + Y+ G + Y G Y
Sbjct: 281 NAMNALNGKVIDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGGTVLQGDYAYTVGQMY 336
>UNIPROTKB|E1BQR8 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0030895 "apolipoprotein B mRNA editing enzyme
complex" evidence=IEA] [GO:0050821 "protein stabilization"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720 GO:GO:0050821
GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:AADN02035165
IPI:IPI00576681 ProteinModelPortal:E1BQR8
Ensembl:ENSGALT00000005974 Uniprot:E1BQR8
Length = 540
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 93/263 (35%), Positives = 152/263 (57%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+ A+
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAR 110
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGV--VDVIV 168
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM- 227
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
S VK LYV+NL +TT + +++ F + G V +V RD+ F+H+ +R A+
Sbjct: 228 -SSVKILYVRNLMLSTTEETIEKEFNNIKQGAVERV------KKIRDYAFVHFNKREDAV 280
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
A+K +DG +EV LA+P
Sbjct: 281 HAMKALNGKVLDGSPIEVTLAKP 303
>MGI|MGI:1917115 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0004131
"cytosine deaminase activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005720 "nuclear heterochromatin" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=ISO]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;TAS] [GO:0050821 "protein stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 InterPro:IPR014720 MGI:MGI:1917115 GO:GO:0005783
GO:GO:0005737 GO:GO:0050821 GO:GO:0000166 CTD:29974
eggNOG:NOG258596 HOVERGEN:HBG051917 OMA:PGYAVPN GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:AY566862 EMBL:AY566863
EMBL:AY566864 EMBL:AC117816 EMBL:AC125019 EMBL:BC089622
IPI:IPI00357048 IPI:IPI00665782 IPI:IPI00667120
RefSeq:NP_001074543.1 UniGene:Mm.87538 ProteinModelPortal:Q5YD48
SMR:Q5YD48 STRING:Q5YD48 PhosphoSite:Q5YD48 PaxDb:Q5YD48
PRIDE:Q5YD48 Ensembl:ENSMUST00000075838 GeneID:69865 KEGG:mmu:69865
UCSC:uc008het.1 UCSC:uc008heu.1 UCSC:uc008hev.1
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 InParanoid:Q5YD48
OrthoDB:EOG4SXNCC NextBio:330501 Bgee:Q5YD48 CleanEx:MM_A1CF
Genevestigator:Q5YD48 GermOnline:ENSMUSG00000052595 Uniprot:Q5YD48
Length = 595
Score = 394 (143.8 bits), Expect = 2.4e-36, P = 2.4e-36
Identities = 93/263 (35%), Positives = 153/263 (58%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G E+FIG LP+D E++L LCE IG+++E+ L+ D + G ++G+AFV F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDVIV 168
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+++ +L G+ V WAEP+ D
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTM- 227
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 -SSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
+A+K +DG +EV LA+P
Sbjct: 281 EAMKALNGKVLDGSPIEVTLAKP 303
>UNIPROTKB|E2QWK5 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
EMBL:AAEX03014929 RefSeq:XP_534776.2 ProteinModelPortal:E2QWK5
Ensembl:ENSCAFT00000024715 GeneID:477581 KEGG:cfa:477581
Uniprot:E2QWK5
Length = 590
Score = 393 (143.4 bits), Expect = 2.9e-36, P = 2.9e-36
Identities = 95/266 (35%), Positives = 155/266 (58%)
Query: 98 ALPPH-GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
A PP G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +++
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNRQ 107
Query: 157 VAKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV ++
Sbjct: 108 EAKDAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTEGV--VD 165
Query: 216 LIKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHS 273
+I P A +RNRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 166 VIVYPSAADKTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED 225
Query: 274 AAAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERS 331
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 TM--SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRE 277
Query: 332 SALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 278 DAVEAMKALNGKMLDGSPIEVTLAKP 303
>UNIPROTKB|F8W9F8 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0005737 GO:GO:0000166 EMBL:AL512366 EMBL:AL589794
IPI:IPI00981528 HGNC:HGNC:24086 Gene3D:3.30.160.20
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 ProteinModelPortal:F8W9F8 SMR:F8W9F8
Ensembl:ENST00000395489 UCSC:uc010qho.2 ArrayExpress:F8W9F8
Bgee:F8W9F8 Uniprot:F8W9F8
Length = 587
Score = 392 (143.0 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 95/266 (35%), Positives = 154/266 (57%)
Query: 98 ALPPH-GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
A PP G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 42 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKV 100
Query: 157 VAKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV ++
Sbjct: 101 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VD 158
Query: 216 LIKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHS 273
+I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 159 VIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDED 218
Query: 274 AAAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERS 331
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 219 TM--SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRE 270
Query: 332 SALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 271 DAVEAMKALNGKVLDGSPIEVTLAKP 296
>UNIPROTKB|Q5R9H4 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9601
"Pongo abelii" [GO:0003727 "single-stranded RNA binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0030895
"apolipoprotein B mRNA editing enzyme complex" evidence=ISS]
[GO:0050821 "protein stabilization" evidence=ISS] [GO:0003725
"double-stranded RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821
GO:GO:0000166 CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895
GO:GO:0003727 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:CR859414
RefSeq:NP_001127437.1 UniGene:Pab.12059 ProteinModelPortal:Q5R9H4
SMR:Q5R9H4 GeneID:100174508 KEGG:pon:100174508 InParanoid:Q5R9H4
Uniprot:Q5R9H4
Length = 587
Score = 392 (143.0 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 95/266 (35%), Positives = 154/266 (57%)
Query: 98 ALPPH-GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
A PP G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKL 107
Query: 157 VAKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV ++
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VD 165
Query: 216 LIKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHS 273
+I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 166 VIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED 225
Query: 274 AAAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERS 331
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 TM--SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRE 277
Query: 332 SALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 278 DAVEAMKALNGKVLDGSPIEVTLAKP 303
>UNIPROTKB|Q9NQ94 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0030895 "apolipoprotein B
mRNA editing enzyme complex" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0050821 "protein stabilization" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016554 "cytidine
to uridine editing" evidence=TAS] [GO:0016556 "mRNA modification"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0010467
GO:GO:0050821 GO:GO:0005654 GO:GO:0000166 EMBL:AJ272078
EMBL:AJ272079 EMBL:AF209192 EMBL:AF271789 EMBL:AF271790
EMBL:AK000324 EMBL:AK291982 EMBL:AL512366 EMBL:AL589794
EMBL:CH471083 EMBL:BC130519 EMBL:BC144196 IPI:IPI00071360
IPI:IPI00148257 IPI:IPI00299499 IPI:IPI00657723 IPI:IPI00657770
IPI:IPI00981528 RefSeq:NP_001185747.1 RefSeq:NP_001185748.1
RefSeq:NP_001185749.1 RefSeq:NP_055391.2 RefSeq:NP_620310.1
RefSeq:NP_620311.1 UniGene:Hs.282795 PDB:2CPD PDBsum:2CPD
ProteinModelPortal:Q9NQ94 SMR:Q9NQ94 IntAct:Q9NQ94 STRING:Q9NQ94
PhosphoSite:Q9NQ94 DMDM:74761651 PaxDb:Q9NQ94 PRIDE:Q9NQ94
Ensembl:ENST00000282641 Ensembl:ENST00000373993
Ensembl:ENST00000373995 Ensembl:ENST00000373997
Ensembl:ENST00000374001 Ensembl:ENST00000395495 GeneID:29974
KEGG:hsa:29974 UCSC:uc001jjh.3 UCSC:uc001jji.3 UCSC:uc001jjj.3
CTD:29974 GeneCards:GC10M052566 HGNC:HGNC:24086 HPA:HPA037779
neXtProt:NX_Q9NQ94 PharmGKB:PA162375098 eggNOG:NOG258596
HOVERGEN:HBG051917 InParanoid:Q9NQ94 OMA:PGYAVPN PhylomeDB:Q9NQ94
Reactome:REACT_1675 EvolutionaryTrace:Q9NQ94 GenomeRNAi:29974
NextBio:52719 ArrayExpress:Q9NQ94 Bgee:Q9NQ94 CleanEx:HS_A1CF
Genevestigator:Q9NQ94 GermOnline:ENSG00000148584 GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
Uniprot:Q9NQ94
Length = 594
Score = 392 (143.0 bits), Expect = 4.0e-36, P = 4.0e-36
Identities = 95/266 (35%), Positives = 154/266 (57%)
Query: 98 ALPPH-GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
A PP G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKV 107
Query: 157 VAKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV ++
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VD 165
Query: 216 LIKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHS 273
+I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 166 VIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDED 225
Query: 274 AAAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERS 331
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 TM--SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRE 277
Query: 332 SALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 278 DAVEAMKALNGKVLDGSPIEVTLAKP 303
>RGD|619834 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=ISO;ISS]
[GO:0003727 "single-stranded RNA binding" evidence=ISO;ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0004131 "cytosine
deaminase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005720 "nuclear heterochromatin" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=NAS;IMP]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;ISS;TAS] [GO:0050821 "protein stabilization"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
RGD:619834 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821 GO:GO:0000166
CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895 GO:GO:0005720
GO:GO:0004131 GO:GO:0003729 GO:GO:0003727 GO:GO:0016554
GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 OrthoDB:EOG4SXNCC EMBL:AF290984 EMBL:AF442133
EMBL:AF442134 EMBL:AF442135 EMBL:AY028945 IPI:IPI00382071
IPI:IPI00679207 IPI:IPI00679214 IPI:IPI00679221 RefSeq:NP_596891.1
UniGene:Rn.162520 ProteinModelPortal:Q923K9 SMR:Q923K9
STRING:Q923K9 PhosphoSite:Q923K9 PRIDE:Q923K9
Ensembl:ENSRNOT00000052256 GeneID:170912 KEGG:rno:170912
UCSC:RGD:619834 eggNOG:NOG246793 InParanoid:Q923K9 OMA:HAGVHHI
NextBio:621377 ArrayExpress:Q923K9 Genevestigator:Q923K9
Uniprot:Q923K9
Length = 594
Score = 392 (143.0 bits), Expect = 4.0e-36, P = 4.0e-36
Identities = 92/263 (34%), Positives = 153/263 (58%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDVIV 168
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+++ +L G+ V WAEP+ D
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTM- 227
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 -SSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
+A+K +DG +EV LA+P
Sbjct: 281 EAMKALNGKVLDGSPIEVTLAKP 303
>UNIPROTKB|F1LNL0 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 RGD:619834 GO:GO:0050821 GO:GO:0000166
GO:GO:0030895 GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
IPI:IPI00679207 Ensembl:ENSRNOT00000067643 ArrayExpress:F1LNL0
Uniprot:F1LNL0
Length = 594
Score = 392 (143.0 bits), Expect = 4.0e-36, P = 4.0e-36
Identities = 92/263 (34%), Positives = 153/263 (58%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDVIV 168
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+++ +L G+ V WAEP+ D
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTM- 227
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 -SSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
+A+K +DG +EV LA+P
Sbjct: 281 EAMKALNGKVLDGSPIEVTLAKP 303
>UNIPROTKB|F1Q212 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:AAEX03002529 EMBL:AAEX03002530
Ensembl:ENSCAFT00000025193 Uniprot:F1Q212
Length = 592
Score = 389 (142.0 bits), Expect = 8.5e-36, P = 8.5e-36
Identities = 99/288 (34%), Positives = 149/288 (51%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 69 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVTYCHKGEAK 127
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 128 RAVRELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 187
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 188 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 246
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
VK LYV+NL TT +K+ F G+ K RD+ F+H+A R A+ A+
Sbjct: 247 -VKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKK-IRDYAFVHFASREDAVLAMN 301
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTEGVYSCAA---GVHPSGLPHAGY 383
E++G LEV LA+P +K Y AA G + P GY
Sbjct: 302 SLNGTELEGSCLEVTLAKP-VDKEQYSRYQKAAKGGGAAEAAAPQPGY 348
>UNIPROTKB|Q9XSR3 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 HSSP:Q9NQ94 EMBL:AJ388555 RefSeq:NP_001002955.1
UniGene:Cfa.124 ProteinModelPortal:Q9XSR3 SMR:Q9XSR3 GeneID:403423
KEGG:cfa:403423 CTD:54502 InParanoid:Q9XSR3 OrthoDB:EOG4THVTH
NextBio:20816943 Uniprot:Q9XSR3
Length = 592
Score = 389 (142.0 bits), Expect = 8.5e-36, P = 8.5e-36
Identities = 99/288 (34%), Positives = 149/288 (51%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 69 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVTYCHKGEAK 127
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 128 RAVRELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 187
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 188 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 246
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
VK LYV+NL TT +K+ F G+ K RD+ F+H+A R A+ A+
Sbjct: 247 -VKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKK-IRDYAFVHFASREDAVLAMN 301
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTEGVYSCAA---GVHPSGLPHAGY 383
E++G LEV LA+P +K Y AA G + P GY
Sbjct: 302 SLNGTELEGSCLEVTLAKP-VDKEQYSRYQKAAKGGGAAEAAAPQPGY 348
>UNIPROTKB|E1BB24 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:DAAA02044105 EMBL:DAAA02044106
IPI:IPI00711895 RefSeq:NP_001179648.1 UniGene:Bt.52151
ProteinModelPortal:E1BB24 Ensembl:ENSBTAT00000002223 GeneID:532175
KEGG:bta:532175 NextBio:20875624 Uniprot:E1BB24
Length = 533
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 97/269 (36%), Positives = 152/269 (56%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIV 173
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D
Sbjct: 174 YPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM- 232
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
+VK LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+
Sbjct: 233 -QRVKVLYVRNLMISTTEETIKAEFNKFKPGSVERV------KKLRDYAFVHFFNREDAV 285
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRT 363
A+ IDG +EV LA+P + T
Sbjct: 286 AAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>UNIPROTKB|E2R8F4 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:AAEX03010068 RefSeq:XP_532699.1
ProteinModelPortal:E2R8F4 Ensembl:ENSCAFT00000013439 GeneID:475475
KEGG:cfa:475475 NextBio:20851314 Uniprot:E2R8F4
Length = 533
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 97/269 (36%), Positives = 152/269 (56%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIV 173
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D
Sbjct: 174 YPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM- 232
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
+VK LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+
Sbjct: 233 -QRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAV 285
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRT 363
A+ IDG +EV LA+P + T
Sbjct: 286 AAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>UNIPROTKB|E2RTF9 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
EMBL:AAEX03010068 Ensembl:ENSCAFT00000037016 Uniprot:E2RTF9
Length = 485
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 97/269 (36%), Positives = 152/269 (56%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIV 173
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D
Sbjct: 174 YPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM- 232
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
+VK LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+
Sbjct: 233 -QRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAV 285
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRT 363
A+ IDG +EV LA+P + T
Sbjct: 286 AAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>UNIPROTKB|B3KWU8 [details] [associations]
symbol:RBM46 "Putative uncharacterized protein MGC27016"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 EMBL:CH471056 CTD:166863 RefSeq:NP_659416.1
UniGene:Hs.133095 GeneID:166863 KEGG:hsa:166863 HGNC:HGNC:28401
PharmGKB:PA162400810 GenomeRNAi:166863 NextBio:88637 EMBL:AC009567
EMBL:AK125877 IPI:IPI00967774 SMR:B3KWU8 STRING:B3KWU8
Ensembl:ENST00000510397 UCSC:uc003iop.1 Uniprot:B3KWU8
Length = 470
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 97/269 (36%), Positives = 152/269 (56%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIV 173
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D
Sbjct: 174 YPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM- 232
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
+VK LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+
Sbjct: 233 -QRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAV 285
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRT 363
A+ IDG +EV LA+P + T
Sbjct: 286 AAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>UNIPROTKB|B4DZ27 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 UniGene:Hs.133095 HGNC:HGNC:28401 EMBL:AC009567
EMBL:AK302720 IPI:IPI00967437 SMR:B4DZ27 STRING:B4DZ27
Ensembl:ENST00000514866 UCSC:uc011cim.1 Uniprot:B4DZ27
Length = 485
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 97/269 (36%), Positives = 152/269 (56%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIV 173
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D
Sbjct: 174 YPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM- 232
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
+VK LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+
Sbjct: 233 -QRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAV 285
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRT 363
A+ IDG +EV LA+P + T
Sbjct: 286 AAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>UNIPROTKB|Q8TBY0 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:CH471056 CTD:166863 eggNOG:NOG235650
EMBL:BC028588 IPI:IPI00152304 RefSeq:NP_659416.1 UniGene:Hs.133095
HSSP:Q9NQ94 ProteinModelPortal:Q8TBY0 SMR:Q8TBY0 STRING:Q8TBY0
PhosphoSite:Q8TBY0 DMDM:74760436 PaxDb:Q8TBY0 PRIDE:Q8TBY0
Ensembl:ENST00000281722 GeneID:166863 KEGG:hsa:166863
UCSC:uc003ioo.3 GeneCards:GC04P155702 HGNC:HGNC:28401 HPA:HPA050601
neXtProt:NX_Q8TBY0 PharmGKB:PA162400810 InParanoid:Q8TBY0
OMA:YPGTKLT PhylomeDB:Q8TBY0 GenomeRNAi:166863 NextBio:88637
ArrayExpress:Q8TBY0 Bgee:Q8TBY0 CleanEx:HS_RBM46
Genevestigator:Q8TBY0 Uniprot:Q8TBY0
Length = 533
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 97/269 (36%), Positives = 152/269 (56%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIV 173
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D
Sbjct: 174 YPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM- 232
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
+VK LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+
Sbjct: 233 -QRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAV 285
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRT 363
A+ IDG +EV LA+P + T
Sbjct: 286 AAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>UNIPROTKB|F1RYR7 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:CU855658 RefSeq:XP_003129173.1
UniGene:Ssc.94502 Ensembl:ENSSSCT00000009851 GeneID:100513804
KEGG:ssc:100513804 Uniprot:F1RYR7
Length = 533
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 97/269 (36%), Positives = 152/269 (56%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIV 173
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D
Sbjct: 174 YPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM- 232
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
+VK LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+
Sbjct: 233 -QRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAV 285
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRT 363
A+ IDG +EV LA+P + T
Sbjct: 286 AAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>MGI|MGI:3645057 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:3645057 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW OMA:YPGTKLT EMBL:AC158935 IPI:IPI00672754
RefSeq:NP_001139800.1 UniGene:Mm.265114 ProteinModelPortal:P86049
SMR:P86049 PhosphoSite:P86049 PaxDb:P86049 PRIDE:P86049
Ensembl:ENSMUST00000048647 GeneID:633285 KEGG:mmu:633285
UCSC:uc012cqu.1 NextBio:422664 Bgee:P86049 Genevestigator:P86049
Uniprot:P86049
Length = 533
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 97/269 (36%), Positives = 152/269 (56%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIV 173
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D
Sbjct: 174 YPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM- 232
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
+VK LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+
Sbjct: 233 -QRVKVLYVRNLMISTTEETIKAEFSKFKPGAVERV------KKLRDYAFVHFFHREDAV 285
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRT 363
A+ IDG +EV LA+P + T
Sbjct: 286 AAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>RGD|1560205 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1560205 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OrthoDB:EOG4FR0RW OMA:YPGTKLT IPI:IPI00368354
RefSeq:NP_001129189.1 UniGene:Rn.145040 ProteinModelPortal:D3ZAE2
Ensembl:ENSRNOT00000035846 GeneID:310548 KEGG:rno:310548
UCSC:RGD:1560205 NextBio:662134 Uniprot:D3ZAE2
Length = 533
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 97/269 (36%), Positives = 152/269 (56%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIV 173
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D
Sbjct: 174 YPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM- 232
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
+VK LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+
Sbjct: 233 -QRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAV 285
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRT 363
A+ IDG +EV LA+P + T
Sbjct: 286 AAMSVMNGKCIDGASIEVTLAKPVNKENT 314
>UNIPROTKB|F6RYN2 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:DAAA02017489 IPI:IPI00690190
RefSeq:NP_001192963.1 UniGene:Bt.22438 Ensembl:ENSBTAT00000003040
GeneID:540831 KEGG:bta:540831 NextBio:20878859 Uniprot:F6RYN2
Length = 591
Score = 382 (139.5 bits), Expect = 5.4e-35, P = 5.4e-35
Identities = 95/273 (34%), Positives = 145/273 (53%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAK 125
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
VK LYV+NL TT +K+ F G+ K RD+ F+H+A R A+ A+
Sbjct: 245 -VKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKK-IRDYAFVHFASREDAVHAMN 299
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTEGVYSCAA 371
+ E++G LEV LA+P +K Y AA
Sbjct: 300 NLNGTELEGSCLEVTLAKP-VDKEQYSRYQKAA 331
>UNIPROTKB|F1S4H0 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:CU929922 RefSeq:XP_003128987.3
Ensembl:ENSSSCT00000009623 GeneID:100513606 KEGG:ssc:100513606
Uniprot:F1S4H0
Length = 591
Score = 382 (139.5 bits), Expect = 5.4e-35, P = 5.4e-35
Identities = 95/273 (34%), Positives = 145/273 (53%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAK 125
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
VK LYV+NL TT +K+ F G+ K RD+ F+H+A R A+ A+
Sbjct: 245 -VKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKK-IRDYAFVHFASREDAVHAMN 299
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTEGVYSCAA 371
+ E++G LEV LA+P +K Y AA
Sbjct: 300 NLNGTELEGSCLEVTLAKP-VDKEQYSRYQKAA 331
>UNIPROTKB|D6R9D6 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965625
ProteinModelPortal:D6R9D6 SMR:D6R9D6 Ensembl:ENST00000510871
ArrayExpress:D6R9D6 Bgee:D6R9D6 Uniprot:D6R9D6
Length = 393
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 94/273 (34%), Positives = 144/273 (52%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
VK LYV+NL TT +K+ F G+ K RD+ F+H+ R A+ A+
Sbjct: 245 -VKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKK-IRDYAFVHFTSREDAVHAMN 299
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTEGVYSCAA 371
+ E++G LEV LA+P +K Y AA
Sbjct: 300 NLNGTELEGSCLEVTLAKP-VDKEQYSRYQKAA 331
>UNIPROTKB|B7Z8Z7 [details] [associations]
symbol:RBM47 "cDNA FLJ51456, moderately similar to APOBEC1
complementation factor" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 UniGene:Hs.518727 HGNC:HGNC:30358 ChiTaRS:RBM47
EMBL:AK304206 IPI:IPI00964320 SMR:B7Z8Z7 STRING:B7Z8Z7
Ensembl:ENST00000514014 Uniprot:B7Z8Z7
Length = 555
Score = 378 (138.1 bits), Expect = 8.2e-35, P = 8.2e-35
Identities = 94/273 (34%), Positives = 144/273 (52%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 29 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 87
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 88 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 147
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 148 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 206
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
VK LYV+NL TT +K+ F G+ K RD+ F+H+ R A+ A+
Sbjct: 207 -VKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKK-IRDYAFVHFTSREDAVHAMN 261
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTEGVYSCAA 371
+ E++G LEV LA+P +K Y AA
Sbjct: 262 NLNGTELEGSCLEVTLAKP-VDKEQYSRYQKAA 293
>UNIPROTKB|E2QVD3 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 ProteinModelPortal:E2QVD3
Ensembl:ENSCAFT00000004869 Uniprot:E2QVD3
Length = 622
Score = 381 (139.2 bits), Expect = 9.8e-35, P = 9.8e-35
Identities = 84/239 (35%), Positives = 139/239 (58%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
+VK L+V+NL T + L++ F + G++ +V K K D+ FIH+ ER A+K I
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKVI 388
>TAIR|locus:2146564 [details] [associations]
symbol:AT5G28390 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00530379 RefSeq:NP_198191.2 UniGene:At.49421
ProteinModelPortal:F4K739 SMR:F4K739 EnsemblPlants:AT5G28390.1
GeneID:832924 KEGG:ath:AT5G28390 PhylomeDB:F4K739 Uniprot:F4K739
Length = 180
Score = 310 (114.2 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 58/102 (56%), Positives = 80/102 (78%)
Query: 247 MTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGE 306
M++ +FKLD N PTVSWAE +S + ++A SQVKALY+KNLP + T ++LK LF+ HG+
Sbjct: 1 MSNPSFKLDDNAPTVSWAESRSGGEGDSSA-SQVKALYIKNLPRDITQERLKALFEHHGK 59
Query: 307 VTKVVTPPGKSGKRD--FGFIHYAERSSALKAIKDTEKYEID 346
+ KVV PP K GK D +GF+HYAER+S ++A+K+TE+YEID
Sbjct: 60 ILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEID 101
Score = 81 (33.6 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 408 QPMIYGRGQMPAGMHMVPMVLPDGRIGY 435
QP+++ G GM M+P++LPDGRI Y
Sbjct: 107 QPLMHAGGHAAGGMSMMPIMLPDGRIRY 134
Score = 72 (30.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
++I LP+D ++E L+ L E G++ +V + K E + FV + + RA+
Sbjct: 36 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRAL 92
>MGI|MGI:2384294 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:2384294 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 HSSP:Q9NQ94 CTD:54502
OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:AK035620 EMBL:AK085733
EMBL:AK142584 EMBL:AK170082 EMBL:BC013481 EMBL:BC034195
EMBL:BC112902 IPI:IPI00128377 IPI:IPI00265759 RefSeq:NP_001120854.1
RefSeq:NP_620704.1 RefSeq:NP_848541.2 UniGene:Mm.36863
UniGene:Mm.400185 UniGene:Mm.426431 ProteinModelPortal:Q91WT8
SMR:Q91WT8 PhosphoSite:Q91WT8 PaxDb:Q91WT8 PRIDE:Q91WT8
Ensembl:ENSMUST00000094756 Ensembl:ENSMUST00000094757
Ensembl:ENSMUST00000113724 Ensembl:ENSMUST00000113726
Ensembl:ENSMUST00000167950 GeneID:245945 KEGG:mmu:245945
UCSC:uc008xok.2 UCSC:uc008xop.2 InParanoid:Q91WT8 NextBio:387022
Bgee:Q91WT8 CleanEx:MM_RBM47 Genevestigator:Q91WT8 Uniprot:Q91WT8
Length = 590
Score = 378 (138.1 bits), Expect = 1.5e-34, P = 1.5e-34
Identities = 94/273 (34%), Positives = 144/273 (52%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYA 185
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQT- 244
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
VK LYV+NL TT + +K+ F G+ K RD+ F+H+ R A+ A+
Sbjct: 245 -VKILYVRNLMIETTEETIKKSF---GQFNPGCVERVKK-IRDYAFVHFTSREDAVHAMN 299
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTEGVYSCAA 371
+ E++G LEV LA+P +K Y AA
Sbjct: 300 NLNGTELEGSCLEVTLAKP-VDKEQYSRYQKAA 331
>UNIPROTKB|A0AV96 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003723 CTD:54502
OrthoDB:EOG4THVTH EMBL:AF261889 EMBL:AF262323 EMBL:AK000280
EMBL:AC098869 EMBL:AC112717 EMBL:BC034402 EMBL:BC126261
IPI:IPI00005042 IPI:IPI00169342 RefSeq:NP_001092104.1
RefSeq:NP_061900.2 UniGene:Hs.518727 PDB:2DIS PDBsum:2DIS
ProteinModelPortal:A0AV96 SMR:A0AV96 IntAct:A0AV96 STRING:A0AV96
PhosphoSite:A0AV96 PaxDb:A0AV96 PRIDE:A0AV96 DNASU:54502
Ensembl:ENST00000295971 Ensembl:ENST00000319592
Ensembl:ENST00000381793 Ensembl:ENST00000381795 GeneID:54502
KEGG:hsa:54502 UCSC:uc003gvc.2 UCSC:uc003gvd.2
GeneCards:GC04M040425 HGNC:HGNC:30358 HPA:HPA006347
neXtProt:NX_A0AV96 PharmGKB:PA162400825 InParanoid:A0AV96
OMA:IGPNREY ChiTaRS:RBM47 EvolutionaryTrace:A0AV96 GenomeRNAi:54502
NextBio:56852 ArrayExpress:A0AV96 Bgee:A0AV96 CleanEx:HS_RBM47
Genevestigator:A0AV96 Uniprot:A0AV96
Length = 593
Score = 378 (138.1 bits), Expect = 1.6e-34, P = 1.6e-34
Identities = 94/273 (34%), Positives = 144/273 (52%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
VK LYV+NL TT +K+ F G+ K RD+ F+H+ R A+ A+
Sbjct: 245 -VKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKK-IRDYAFVHFTSREDAVHAMN 299
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTEGVYSCAA 371
+ E++G LEV LA+P +K Y AA
Sbjct: 300 NLNGTELEGSCLEVTLAKP-VDKEQYSRYQKAA 331
>RGD|1359713 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359713 GO:GO:0005634
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 GO:GO:0003723
HSSP:Q9NQ94 CTD:54502 OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:BC081995
IPI:IPI00196127 RefSeq:NP_001005882.1 UniGene:Rn.38803
ProteinModelPortal:Q66H68 SMR:Q66H68 PRIDE:Q66H68
Ensembl:ENSRNOT00000003327 GeneID:305340 KEGG:rno:305340
UCSC:RGD:1359713 InParanoid:Q66H68 NextBio:654387
Genevestigator:Q66H68 Uniprot:Q66H68
Length = 590
Score = 377 (137.8 bits), Expect = 1.9e-34, P = 1.9e-34
Identities = 94/273 (34%), Positives = 143/273 (52%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYA 185
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQT- 244
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
VK LYV+NL TT + +K F G+ K RD+ F+H+ R A+ A+
Sbjct: 245 -VKILYVRNLMIETTEETIKRSF---GQFNPGCVERVKK-IRDYAFVHFTSREDAVHAMN 299
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTEGVYSCAA 371
+ E++G LEV LA+P +K Y AA
Sbjct: 300 NLNGTELEGSCLEVTLAKP-VDKEQYSRYQKAA 331
>UNIPROTKB|E1BV69 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YPGTKLT EMBL:AADN02016545 IPI:IPI00595715
ProteinModelPortal:E1BV69 Ensembl:ENSGALT00000015094 Uniprot:E1BV69
Length = 467
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 94/265 (35%), Positives = 149/265 (56%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P++ E++L L E G+++E+ L+ + SGE++GFAFV + +KE A+
Sbjct: 57 PPRGCEVFVGKIPRNIYEDELVPLFERAGKIYELRLMMEF-SGENRGFAFVMYTTKEDAQ 115
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI L + + + G+ I +S N RLFIG +P+ ++E K ++ + GV + +
Sbjct: 116 LAIKILNNYEIRPGRFIGVCISLDNCRLFIGAIPREKKKEEILKEMKRITEGVVDVIVCP 175
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
D ++NRGFAFV Y ++ A +R+++ F+L G V WA P+ D A
Sbjct: 176 DATDRTKNRGFAFVEYESHRAAAMARRRLLPGTFQLWGRAVQVDWACPEKEVD--AETMR 233
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK LYV+NL +TT +K F + +VV K RD+ F+H+ R A+ A+
Sbjct: 234 RVKVLYVRNLMISTTEDTIKAEFNKFKP--RVVERVKKL--RDYAFVHFYNREDAVAAMS 289
Query: 339 DTEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P NK +
Sbjct: 290 IMNGKCIDGASIEVTLAKP-VNKES 313
>WB|WBGene00002000 [details] [associations]
symbol:hrp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0006915 GO:GO:0000166
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0048477 GO:GO:0003676
GO:GO:0040035 HSSP:P09651 EMBL:AL137227 UniGene:Cel.7321
GeneID:173086 KEGG:cel:CELE_F58D5.1 CTD:173086 NextBio:878217
RefSeq:NP_493049.2 ProteinModelPortal:Q9NLD1 SMR:Q9NLD1
DIP:DIP-25792N IntAct:Q9NLD1 MINT:MINT-1104835 STRING:Q9NLD1
PRIDE:Q9NLD1 EnsemblMetazoa:F58D5.1a.1 EnsemblMetazoa:F58D5.1a.2
EnsemblMetazoa:F58D5.1a.3 WormBase:F58D5.1a HOGENOM:HOG000020701
InParanoid:Q9NLD1 OMA:QVLVQFK ArrayExpress:Q9NLD1 Uniprot:Q9NLD1
Length = 611
Score = 369 (135.0 bits), Expect = 1.9e-33, P = 1.9e-33
Identities = 86/266 (32%), Positives = 146/266 (54%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G E+++G +P D E+ L L E G+++++ L+ D SG S+G+AFV + +KE A A
Sbjct: 199 GHEIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAA 258
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+ GK ++ ++S N RLFIGN+PK+ ++ E + ++ GV + + P
Sbjct: 259 KTYDGHEISTGKPLKVNVSIANTRLFIGNIPKTKSKDEILEELKTHAEGVVDVIVYSVPD 318
Query: 222 APS-RNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
+NRGF FV + ++ A ++K+ + V WAE + PD S+V
Sbjct: 319 NEKIKNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEHQEEPDEDTM--SKV 376
Query: 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
K LY++N+ E T ++L ELF+ + + +V K K D+ FIH+ ER LKA+++
Sbjct: 377 KVLYIRNIKEAVTEEKLNELFKEYASLDRV-----KKVK-DYAFIHFNERDDCLKAMEEW 430
Query: 341 EKYEIDGQVLEVALARPQTNKRTEGV 366
E++G V+E +LA+P K+ + V
Sbjct: 431 NGKELEGTVVEASLAKPPQEKKKKPV 456
>TAIR|locus:2042366 [details] [associations]
symbol:AT2G44710 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 EMBL:AY091781 EMBL:BT000637
IPI:IPI00540100 RefSeq:NP_850422.1 UniGene:At.27807
ProteinModelPortal:Q8RWQ1 SMR:Q8RWQ1 IntAct:Q8RWQ1 STRING:Q8RWQ1
PRIDE:Q8RWQ1 EnsemblPlants:AT2G44710.1 GeneID:819079
KEGG:ath:AT2G44710 TAIR:At2g44710 InParanoid:Q8RWQ1 OMA:EGEGYEN
PhylomeDB:Q8RWQ1 ProtClustDB:CLSN2722610 Genevestigator:Q8RWQ1
Uniprot:Q8RWQ1
Length = 809
Score = 357 (130.7 bits), Expect = 1.1e-31, P = 1.1e-31
Identities = 106/373 (28%), Positives = 189/373 (50%)
Query: 36 VGRDGNVKQNDEDEEYDAETSKEDQSP------GANGSHINTEDAVED----EDKRTASI 85
+G++ + N+E EE + E E+++ G +++ED +D E K ++
Sbjct: 135 LGQEDHELVNEEGEELEEEIEVEEEAGEFADEIGDGAEDLDSEDDDDDHAIEEVKHGETV 194
Query: 86 SEDEKEKHDQLLALPPHGS-EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGES 144
+E+E HD L E+F+G L K ASEEDL+ + +GEV EV ++K+ + +S
Sbjct: 195 DVEEEEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKS 254
Query: 145 KGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVI 204
KG AF+ F + E AKRA+ EL S GK + S+ N+ LF+GN+ K WT + R+ +
Sbjct: 255 KGSAFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALREKL 314
Query: 205 EDVG-PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT-VS 262
+ G +D I L++D + NRG+AF+ + + + A + +++ + P VS
Sbjct: 315 KHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVEKPAKVS 374
Query: 263 WAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGK-SGKR- 320
+ + S D +QVK +++ L + +++++L + +G++ KV S +R
Sbjct: 375 FTD--SFLDLEDEIMAQVKTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRK 432
Query: 321 DFGFIHYAERSSALKAIKDTEKYEI-DGQ---VLEVALARP--QTNKRTEGVYSCAAGVH 374
DFGF+ + +A+ K E+ +G+ + L+RP + K + S H
Sbjct: 433 DFGFVTFDTHEAAVSCAKFINNSELGEGEDKAKVRARLSRPLQKAGKGRQSSRSDQRSRH 492
Query: 375 PSGLPHAGYGSFA 387
+G +G SFA
Sbjct: 493 GAG--RSGRSSFA 503
>UNIPROTKB|F1NJQ8 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
EMBL:AADN02016545 IPI:IPI00822755 ProteinModelPortal:F1NJQ8
Ensembl:ENSGALT00000038887 Uniprot:F1NJQ8
Length = 414
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 86/248 (34%), Positives = 137/248 (55%)
Query: 117 EEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFK-GKTI 175
E++L L E G+++E+ L+ + SGE++GFAFV + +KE A+ AI L + + + G+ I
Sbjct: 3 EDELVPLFERAGKIYELRLMMEF-SGENRGFAFVMYTTKEDAQLAIKILNNYEIRPGRFI 61
Query: 176 RCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYY 235
+S N RLFIG +P+ ++E K ++ + GV + + D ++NRGFAFV Y
Sbjct: 62 GVCISLDNCRLFIGAIPREKKKEEILKEMKRITEGVVDVIVCPDATDRTKNRGFAFVEYE 121
Query: 236 NNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTK 295
++ A +R+++ F+L G V WA P+ D A +VK LYV+NL +TT
Sbjct: 122 SHRAAAMARRRLLPGTFQLWGRAVQVDWACPEKEVD--AETMRRVKVLYVRNLMISTTED 179
Query: 296 QLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355
+K F + +VV K RD+ F+H+ R A+ A+ IDG +EV LA
Sbjct: 180 TIKAEFNKFKP--RVVERVKKL--RDYAFVHFYNREDAVAAMSIMNGKCIDGASIEVTLA 235
Query: 356 RPQTNKRT 363
+P NK +
Sbjct: 236 KP-VNKES 242
>UNIPROTKB|E7ETM7 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 EMBL:AL109936 HGNC:HGNC:5047
ChiTaRS:HNRNPR IPI:IPI00910614 ProteinModelPortal:E7ETM7 SMR:E7ETM7
Ensembl:ENST00000426846 UCSC:uc010odx.2 ArrayExpress:E7ETM7
Bgee:E7ETM7 Uniprot:E7ETM7
Length = 473
Score = 304 (112.1 bits), Expect = 8.1e-27, P = 8.1e-27
Identities = 66/193 (34%), Positives = 109/193 (56%)
Query: 172 GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAF 231
GK + +S NNRLF+G++PK+ T++ + V G+ + L P +NRGF F
Sbjct: 74 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCF 133
Query: 232 VLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPEN 291
+ Y ++ A +R+++ S K+ GN TV WA+P PD A +VK L+V+NL
Sbjct: 134 LEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA--KVKVLFVRNLATT 191
Query: 292 TTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLE 351
T + L++ F G++ +V K K D+ F+H+ +R +A+KA+ + EI+G+ +E
Sbjct: 192 VTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAMDEMNGKEIEGEEIE 245
Query: 352 VALARPQTNKRTE 364
+ LA+P KR E
Sbjct: 246 IVLAKPPDKKRKE 258
>UNIPROTKB|F1LM17 [details] [associations]
symbol:F1LM17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 IPI:IPI00564342 PRIDE:F1LM17
Ensembl:ENSRNOT00000040711 Uniprot:F1LM17
Length = 440
Score = 281 (104.0 bits), Expect = 2.4e-23, P = 2.4e-23
Identities = 79/253 (31%), Positives = 129/253 (50%)
Query: 113 KDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFK- 171
+D E++L L E G V+ + L+ D G+++G+AF+ F KE A+ + S + +
Sbjct: 3 RDLYEDELVPLFEKAGPVWSLRLMMDP-LGQNRGYAFITFCGKEAAQGLVKPCDSCEIRP 61
Query: 172 GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAF 231
GK + S NN F+G PK+ T++ F + V G+ I L P +N GF F
Sbjct: 62 GKVLGVCFSVANNT-FVGFTPKNKTKENFEE-FSKVTEGLVGIILDHQPDDKKKNWGFCF 119
Query: 232 VLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPEN 291
+ Y ++ A +R + S + GN TV A+P PD A +VK L+V+NL
Sbjct: 120 LEYEDHKSAAQARLWLMSGKV-VWGNVVTVERADPVEEPDPEGMA--KVKVLFVRNLATT 176
Query: 292 TTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLE 351
T + L++ F + GE+ +V D+ F+H+ +R A+KA+ + EI+G+ +E
Sbjct: 177 VTEEILEKSFSQFGELERV------KKLTDYAFVHFEDRE-AVKAVDEMNGKEIEGEEIE 229
Query: 352 VALARPQTNKRTE 364
+ LA KR E
Sbjct: 230 IVLAMLPDRKRKE 242
>UNIPROTKB|Q5T0W7 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 EMBL:AL512366 EMBL:AL589794
IPI:IPI00657770 UniGene:Hs.282795 HGNC:HGNC:24086 GO:GO:0005720
GO:GO:0004131 GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 OrthoDB:EOG4SXNCC
HOVERGEN:HBG051370 SMR:Q5T0W7 Ensembl:ENST00000414883
Uniprot:Q5T0W7
Length = 201
Score = 256 (95.2 bits), Expect = 7.3e-22, P = 7.3e-22
Identities = 59/154 (38%), Positives = 96/154 (62%)
Query: 98 ALPPH-GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
A PP G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKV 107
Query: 157 VAKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV ++
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VD 165
Query: 216 LIKDPQAP--SRNRGFAFVLYYNNACADYSRQKM 247
+I P A ++NRGFAFV Y ++ A +R+K+
Sbjct: 166 VIVYPSAADKTKNRGFAFVEYESHRAAAMARRKL 199
>UNIPROTKB|D6RBS9 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965845
ProteinModelPortal:D6RBS9 SMR:D6RBS9 Ensembl:ENST00000515053
ArrayExpress:D6RBS9 Bgee:D6RBS9 Uniprot:D6RBS9
Length = 217
Score = 240 (89.5 bits), Expect = 5.4e-20, P = 5.4e-20
Identities = 54/149 (36%), Positives = 87/149 (58%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKM 247
+NRGFAFV Y ++ A +R+K+
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKL 214
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 246 (91.7 bits), Expect = 3.3e-18, P = 3.3e-18
Identities = 73/266 (27%), Positives = 120/266 (45%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRLF---IGNVPKSWTEKEF-RKVIEDVGPGVDTIELIKD 219
+ KGK IR S+ + L +GNV +K K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
+ ++G+AFV + AD + +KM D + K A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGAKAKE 189
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIK 338
+Y+KN E + LKELF + G+ V SGK + FGF+ Y + A KA++
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI G+V+ V A+ + ++ E
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 135 (52.6 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 28/89 (31%), Positives = 51/89 (57%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E+L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
F FV++ E A +A++E+ K+ GK I
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 118 (46.6 bits), Expect = 0.00076, P = 0.00076
Identities = 43/190 (22%), Positives = 89/190 (46%)
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
++I N + ++ +++ G + ++++++DP S+ GF FV Y + A+ + +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTL-SVKVMRDPSGKSK--GFGFVSYEKHEDANKAVE 249
Query: 246 KMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA-SQVKA----------LYVKNLPENTTT 294
+M ++ G V A+ K Q+K LY+KNL +
Sbjct: 250 EMNGK--EISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 295 KQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEV 352
++L++ F G +T KV+ G+S + FGF+ ++ A KA+ + + + L V
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Query: 353 ALARPQTNKR 362
ALA+ + ++
Sbjct: 366 ALAQRKEERK 375
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 246 (91.7 bits), Expect = 3.3e-18, P = 3.3e-18
Identities = 73/266 (27%), Positives = 120/266 (45%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRLF---IGNVPKSWTEKEF-RKVIEDVGPGVDTIELIKD 219
+ KGK IR S+ + L +GNV +K K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
+ ++G+AFV + AD + +KM D + K A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGAKAKE 189
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIK 338
+Y+KN E + LKELF + G+ V SGK + FGF+ Y + A KA++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI G+V+ V A+ + ++ E
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 134 (52.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 28/89 (31%), Positives = 50/89 (56%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
F FV++ E A +A++E+ K+ GK I
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 118 (46.6 bits), Expect = 0.00076, P = 0.00076
Identities = 43/190 (22%), Positives = 89/190 (46%)
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
++I N + ++ +++ G + ++++++DP S+ GF FV Y + A+ + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTL-SVKVMRDPSGKSK--GFGFVSYEKHEDANKAVE 249
Query: 246 KMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA-SQVKA----------LYVKNLPENTTT 294
+M ++ G V A+ K Q+K LY+KNL +
Sbjct: 250 EMNGK--EISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 295 KQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEV 352
++L++ F G +T KV+ G+S + FGF+ ++ A KA+ + + + L V
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Query: 353 ALARPQTNKR 362
ALA+ + ++
Sbjct: 366 ALAQRKEERK 375
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 245 (91.3 bits), Expect = 4.3e-18, P = 4.3e-18
Identities = 74/268 (27%), Positives = 127/268 (47%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 12 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 164 ELCSKDFKGKTIRCSMSETNNRLF---IGNVPKSWTEKEF-RKVIEDVGPGVDTIELIKD 219
+ KGK IR S+ + L +GNV +K K + D I K
Sbjct: 72 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 131
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
+ ++G+AFV + AD + +KM D + K A A +
Sbjct: 132 VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLN-DRKVFVGRFKSRKEREAEMGAKAKE 190
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEV--TKVVTPP-GKSGKRDFGFIHYAERSSALKA 336
+Y+KN ++ ++LKELF ++G+ KV+T P GKS R FGF+ Y + A KA
Sbjct: 191 FTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKS--RGFGFVSYEKHEDANKA 248
Query: 337 IKDTEKYEIDGQVLEVALARPQTNKRTE 364
+++ E++G+ + V A+ + ++ E
Sbjct: 249 VEEMNGTELNGKTVFVGRAQKKMERQAE 276
Score = 129 (50.5 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 46/190 (24%), Positives = 90/190 (47%)
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
++I N ++ +++ + G + +++++ DP SR GF FV Y + A+ + +
Sbjct: 194 VYIKNFGDDMDDQRLKELFDKYGKTL-SVKVMTDPTGKSR--GFGFVSYEKHEDANKAVE 250
Query: 246 KMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA-SQVKA----------LYVKNLPENTTT 294
+M +L+G T V A+ K Q+K LY+KNL +
Sbjct: 251 EMNGT--ELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 308
Query: 295 KQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEV 352
++L++ F G +T KV+ G+S + FGF+ ++ A KA+ + + + L V
Sbjct: 309 EKLRKEFSPFGSITSAKVMLEEGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 366
Query: 353 ALARPQTNKR 362
ALA+ + ++
Sbjct: 367 ALAQRKEERK 376
Score = 120 (47.3 bits), Expect = 0.00046, P = 0.00046
Identities = 33/129 (25%), Positives = 62/129 (48%)
Query: 58 EDQSPGANGSHINTEDAVEDE-DKRTASISEDEK----------EKHDQLLALPPHGSEV 106
E+ S G H T+DA + +K + D K E+ ++ A + V
Sbjct: 135 ENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNV 194
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I D ++ L++L + G+ V ++ D +G+S+GF FV++ E A +A++E+
Sbjct: 195 YIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEMN 253
Query: 167 SKDFKGKTI 175
+ GKT+
Sbjct: 254 GTELNGKTV 262
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 245 (91.3 bits), Expect = 4.4e-18, P = 4.4e-18
Identities = 73/266 (27%), Positives = 120/266 (45%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRLF---IGNVPKSWTEKEF-RKVIEDVGPGVDTIELIKD 219
+ KGK IR S+ + L +GNV +K K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
+ ++G+AFV + AD + +KM D + K A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGAKAKE 189
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIK 338
+Y+KN E + LKELF + G+ V SGK + FGF+ Y + A KA++
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI G+V+ V A+ + ++ E
Sbjct: 250 EMNGKEITGKVIFVGRAQKKVERQAE 275
Score = 134 (52.2 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/89 (31%), Positives = 51/89 (57%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E+L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
F FV++ E A +A++E+ K+ GK I
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEITGKVI 261
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 243 (90.6 bits), Expect = 6.9e-18, P = 6.9e-18
Identities = 74/268 (27%), Positives = 123/268 (45%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRLF---IGNVPKSWTEKEF-RKVIEDVGPGVDTIELIKD 219
+ KGK IR S+ + L +GNV +K K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
+ ++G+AFV + AD + +KM D + K A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGAKAKE 189
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEV--TKVVTPP-GKSGKRDFGFIHYAERSSALKA 336
+Y+KN E + LKELF + G+ KV+ P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 337 IKDTEKYEIDGQVLEVALARPQTNKRTE 364
+++ EI G+++ V A+ + ++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 130 (50.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 27/89 (30%), Positives = 50/89 (56%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D + G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
F FV++ E A +A++E+ K+ GK I
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKII 261
Score = 117 (46.2 bits), Expect = 0.00094, P = 0.00094
Identities = 43/190 (22%), Positives = 89/190 (46%)
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
++I N + ++ +++ G + ++++++DP S+ GF FV Y + A+ + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTL-SVKVMRDPNGKSK--GFGFVSYEKHEDANKAVE 249
Query: 246 KMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA-SQVKA----------LYVKNLPENTTT 294
+M ++ G V A+ K Q+K LY+KNL +
Sbjct: 250 EMNGK--EISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 295 KQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEV 352
++L++ F G +T KV+ G+S + FGF+ ++ A KA+ + + + L V
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Query: 353 ALARPQTNKR 362
ALA+ + ++
Sbjct: 366 ALAQRKEERK 375
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 243 (90.6 bits), Expect = 7.7e-18, P = 7.7e-18
Identities = 74/268 (27%), Positives = 123/268 (45%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRLF---IGNVPKSWTEKEF-RKVIEDVGPGVDTIELIKD 219
+ KGK IR S+ + L +GNV +K K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
+ ++G+AFV + AD + +KM D + K A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGAKAKE 189
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEV--TKVVTPP-GKSGKRDFGFIHYAERSSALKA 336
+Y+KN E + LKELF + G+ KV+ P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 337 IKDTEKYEIDGQVLEVALARPQTNKRTE 364
+++ EI G+++ V A+ + ++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 130 (50.8 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 27/89 (30%), Positives = 50/89 (56%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D + G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
F FV++ E A +A++E+ K+ GK I
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKII 261
Score = 117 (46.2 bits), Expect = 0.0010, P = 0.0010
Identities = 43/190 (22%), Positives = 89/190 (46%)
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
++I N + ++ +++ G + ++++++DP S+ GF FV Y + A+ + +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTL-SVKVMRDPNGKSK--GFGFVSYEKHEDANKAVE 249
Query: 246 KMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA-SQVKA----------LYVKNLPENTTT 294
+M ++ G V A+ K Q+K LY+KNL +
Sbjct: 250 EMNGK--EISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 295 KQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEV 352
++L++ F G +T KV+ G+S + FGF+ ++ A KA+ + + + L V
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Query: 353 ALARPQTNKR 362
ALA+ + ++
Sbjct: 366 ALAQRKEERK 375
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 240 (89.5 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 72/268 (26%), Positives = 128/268 (47%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRLF---IGNVPKSWTEKEF-RKVIEDVGPGVDTIELIKD 219
+ KGK IR S+ + L +GNV +K K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
+ ++G+AFV + AD + +KM D + K A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGAKAKE 189
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEV--TKVVTPP-GKSGKRDFGFIHYAERSSALKA 336
+Y+KN ++ ++LKELF ++G+ KV+T P GKS + FGF+ + + A KA
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKS--KGFGFVSFEKHEDANKA 247
Query: 337 IKDTEKYEIDGQVLEVALARPQTNKRTE 364
+++ +I+G+++ V A+ + ++ E
Sbjct: 248 VEEMNGKDINGKMVFVGRAQKKVERQAE 275
Score = 133 (51.9 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 38/129 (29%), Positives = 61/129 (47%)
Query: 58 EDQSPGANGSHINTEDAVEDE-DKRTASISEDEK----------EKHDQLLALPPHGSEV 106
E+ S G H T+DA + +K + D K E+ +L A + V
Sbjct: 134 ENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I D +E L++L G+ V ++ D +G+SKGF FV+F E A +A++E+
Sbjct: 194 YIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 167 SKDFKGKTI 175
KD GK +
Sbjct: 253 GKDINGKMV 261
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 232 (86.7 bits), Expect = 2.4e-17, P = 2.4e-17
Identities = 68/271 (25%), Positives = 133/271 (49%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E+ L +G V + + +D+ + S G+A+V F A++A+D
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK+IR S+ + +FI N+ KS K + G + + +
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-K 128
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVS-WAEPKSTPDHSA 274
++ D Q ++G+AFV + N + AD + ++M K G V + K
Sbjct: 129 VMSDDQG---SKGYAFVHFQNQSAADRAIEEMNGKLLK--GCKVFVGRFKNRKDREAELR 183
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSA 333
+ AS+ +Y+KN + ++LK++F ++G+ V SGK + FGF+ + +A
Sbjct: 184 SKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAA 243
Query: 334 LKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+++ +I+GQ++ V A+ + ++ E
Sbjct: 244 KKAVEEMNGRDINGQLIFVGRAQKKVERQAE 274
Score = 136 (52.9 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 29/89 (32%), Positives = 51/89 (57%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
++ K++ +L + + V+I D +E L+D+ G+ V ++ D SG+SKG
Sbjct: 173 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKG 231
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
F FV+F S E AK+A++E+ +D G+ I
Sbjct: 232 FGFVSFDSHEAAKKAVEEMNGRDINGQLI 260
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 234 (87.4 bits), Expect = 2.9e-17, P = 2.9e-17
Identities = 73/298 (24%), Positives = 143/298 (47%)
Query: 77 DEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLV 136
D K + + K+K + +A + +++G L D +E+ L +G V + +
Sbjct: 42 DCSKNSRGQTHSGKDK-EMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRIC 100
Query: 137 KDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN--------NRLFI 188
+D+ + S G+A+V F A++A+D + KGK+IR S+ + +FI
Sbjct: 101 RDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFI 160
Query: 189 GNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMT 248
N+ KS K + G + + +++ D Q ++G+AFV + N + AD + ++M
Sbjct: 161 KNLDKSIDNKTLYEHFSAFGKILSS-KVMSDDQG---SKGYAFVHFQNQSAADRAIEEMN 216
Query: 249 SANFKLDGNTPTVS-WAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEV 307
K G V + K + AS+ +Y+KN + ++LK++F ++G+
Sbjct: 217 GKLLK--GCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKT 274
Query: 308 TKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
V SGK + FGF+ + +A KA+++ +I+GQ++ V A+ + ++ E
Sbjct: 275 LSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 332
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 195 (73.7 bits), Expect = 3.2e-17, Sum P(2) = 3.2e-17
Identities = 54/167 (32%), Positives = 96/167 (57%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+++F+G +PK +EE++++L I + V L+K+K + E +G AFV+ S+E A RAI+
Sbjct: 3 TKLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIE 62
Query: 164 ELC-SKDFKGKT----IRCSMSETN---NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+L SK F+G ++ + SE ++LF+G +P+S+ E++ R++ E G V+ I
Sbjct: 63 QLHNSKKFQGVLNNLQVKYADSEQEKLASKLFVGMLPRSYEEEQIRELFEPHGV-VEDIC 121
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGN-TPTV 261
+++ P S ++G F+ + N A T KLDG+ P V
Sbjct: 122 ILRGPN--SESKGCGFIKFDNRESA--LSAIATLNGMKLDGSPNPLV 164
Score = 164 (62.8 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 50/183 (27%), Positives = 93/183 (50%)
Query: 183 NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADY 242
+ +LF+G +PKS+ E+E + + ++ ++++ LIK+ + + +G AFV + AD
Sbjct: 2 STKLFVGQIPKSFNEEEIKNLFTNIA-NIESVSLIKN-KTTNEPQGCAFVSVPSREEADR 59
Query: 243 SRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQ 302
+ +++ ++ K G ++ + K AS+ L+V LP + +Q++ELF+
Sbjct: 60 AIEQLHNSK-KFQG---VLNNLQVKYADSEQEKLASK---LFVGMLPRSYEEEQIRELFE 112
Query: 303 RHGEVTKVVTPPG-KSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQV--LEVALARPQT 359
HG V + G S + GFI + R SAL AI ++DG L V A +
Sbjct: 113 PHGVVEDICILRGPNSESKGCGFIKFDNRESALSAIATLNGMKLDGSPNPLVVKFADTEK 172
Query: 360 NKR 362
+K+
Sbjct: 173 DKK 175
Score = 128 (50.1 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 28/85 (32%), Positives = 46/85 (54%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
P GS +F+ +P S+ DL L + G V + DK++G SKGF FV++ + A
Sbjct: 400 PQGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANL 459
Query: 161 AIDELCSKDFKGKTIRCSMSETNNR 185
AI L + GK ++ S+ +T+ +
Sbjct: 460 AISNLHGQMMAGKKLKVSLKQTSGQ 484
Score = 85 (35.0 bits), Expect = 3.2e-17, Sum P(2) = 3.2e-17
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
L+V N+P + L LFQ++G V KV + FGF+ Y +SA AI +
Sbjct: 405 LFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAISNL 464
Query: 341 EKYEIDGQVLEVAL 354
+ G+ L+V+L
Sbjct: 465 HGQMMAGKKLKVSL 478
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 215 (80.7 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
Identities = 75/293 (25%), Positives = 142/293 (48%)
Query: 111 LPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF 170
LP ++++L+++ E + E+ LV KD G+SKG A++ F+++ A++ ++E +
Sbjct: 413 LPYKVTQDELKEVFE---DAVEIRLVS-KD-GKSKGIAYIEFKTEADAEKTLEEKQGTEI 467
Query: 171 KGKTIRCSMS--ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV--DTIE-------LIKD 219
G++I + + N+ F G +W+ + V+ ++ +T++ IK
Sbjct: 468 DGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEKATFIKV 527
Query: 220 PQAPS-RNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPKSTPDHSAAAA 277
PQ + +++G+AF+ + A + +++ + S N + ++G + P+ +P+ A +
Sbjct: 528 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN---ARS 581
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEV-TKVVTPPGKSGKRDFGFIHYAERSSALKA 336
K L+VK L E TT + LKE F G + ++VT + FGF+ + A KA
Sbjct: 582 QPSKTLFVKGLSEETTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNSEEDA-KA 638
Query: 337 IKDT-EKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAG 388
K+ E EIDG + + A+P+ G G G G G F G
Sbjct: 639 AKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGG 691
Score = 177 (67.4 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 78/335 (23%), Positives = 148/335 (44%)
Query: 46 DEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDE---KEKHDQLLALPPH 102
DEDEE D E ++++ + E E KR +++ + + K ++ A P
Sbjct: 258 DEDEEEDEEEEEDEEDEDEDEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEATEPT 317
Query: 103 GS-EVFIGGLPKDASEEDLRDLCEPIGEVFEVG--LVKDKDSGESKGFAFVAFRSKEVAK 159
S +F+G L S +L+ I +VF V D G S+ F +V F S E +
Sbjct: 318 TSFNLFVGNLNFSKSASELKT---GISDVFAKNDLAVVDVRIGVSRKFGYVDFESAEDLE 374
Query: 160 RAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV--DTIELI 217
+A++ K F G I+ + + + + KV +D V D +E I
Sbjct: 375 KALELTGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVE-I 432
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS-TPDHSAAA 276
+ +++G A++ + A A+ + ++ ++DG + ++ + K D
Sbjct: 433 RLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGT--EIDGRSISLYYTGEKGQNQDFRGGK 490
Query: 277 AS----QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
S + K L + NL + T + L+E+F++ T + P ++GK + + FI +A
Sbjct: 491 NSTWSGESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFE 547
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQ--TNKRTE 364
A +A+ K EI+G+ + + L P+ N R++
Sbjct: 548 DAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQ 582
Score = 136 (52.9 bits), Expect = 9.6e-06, P = 9.6e-06
Identities = 78/336 (23%), Positives = 142/336 (42%)
Query: 43 KQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQ----LLA 98
++++E++E D E + + A + E+ EDED+ +DE+E+ D +
Sbjct: 157 EEDEEEDEDDFEPAVVKGAAAAAAPASDDEEEEEDEDEDEDEDEDDEEEEDDSEEEAMET 216
Query: 99 LPPHGSEVFIGGLPKDAS--------------EEDLRDLCEPIGEVF---EVGLVKDKDS 141
+P G + +P A EED D E E E +D+D
Sbjct: 217 VPAKGKKAPAKAVPVKAKSTAEDEDEEEDEEDEEDEEDDDEDEDEEEDEEEEEDEEDEDE 276
Query: 142 GESKGFA-----FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWT 196
E + R KE+AK+ + + K + + + T+ LF+GN+ S +
Sbjct: 277 DEEEEEEEPVKEAPGKRKKEMAKQK----AAPEAKKQKVEATEPTTSFNLFVGNLNFSKS 332
Query: 197 EKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG 256
E + I DV D + D + +R F +V + + A+ + + K+ G
Sbjct: 333 ASELKTGISDVFAKNDLA--VVDVRI-GVSRKFGYVDFES---AEDLEKALELTGLKVFG 386
Query: 257 NTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGK 316
N + +PK A + L KNLP T +LKE+F+ E+ ++V+ GK
Sbjct: 387 NE--IKLEKPKGKDSKKDRDA---RTLLAKNLPYKVTQDELKEVFEDAVEI-RLVSKDGK 440
Query: 317 SGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEV 352
S + +I + + A K +++ + EIDG+ + +
Sbjct: 441 S--KGIAYIEFKTEADAEKTLEEKQGTEIDGRSISL 474
Score = 102 (41.0 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+F+ GL ++ +EE L++ + G + +V D+++G SKGF FV F S+E AK A + +
Sbjct: 587 LFVKGLSEETTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 643
Query: 166 CSKDFKGKTI 175
+ G +
Sbjct: 644 EDGEIDGNKV 653
Score = 66 (28.3 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 41 NVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQ 95
N K+ D DEE D + S+ED+ V+ A S+DE+E+ D+
Sbjct: 139 NAKKEDSDEE-DEDDSEEDEEDEEEDEDDFEPAVVKGAAAAAAPASDDEEEEEDE 192
Score = 59 (25.8 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 45 NDEDEEYDAETSKEDQSPGA-NGSHINTEDAVEDEDKRTASISEDEKEKHD 94
++EDEE D E ++D P G+ A +DE++ EDE E D
Sbjct: 153 SEEDEE-DEEEDEDDFEPAVVKGAAAAAAPASDDEEEEEDE-DEDEDEDED 201
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 225 (84.3 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 64/271 (23%), Positives = 125/271 (46%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S +A+V F+ + A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + +F+ N+ KS K + G + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG-NILSCN 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVS-WAEPKSTPDHSA 274
++ D ++G+ FV + + A+ + +KM L+G V + K
Sbjct: 130 VVCDENG---SKGYGFVHFETHEAAERAIKKMNG--MLLNGRKVFVGQFKSRKEREAELG 184
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSA 333
A A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ + A
Sbjct: 185 ARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 334 LKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + E++G+ + V A+ + ++TE
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 139 (54.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 32/89 (35%), Positives = 49/89 (55%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A V+I +D +E L+DL G V ++ D +SG+SKG
Sbjct: 174 KSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
F FV+F E A++A+DE+ K+ GK I
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQI 261
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 211 (79.3 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 75/293 (25%), Positives = 142/293 (48%)
Query: 111 LPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF 170
LP ++++L+++ E + E+ LV KD G+SKG A++ F+++ A++ +E +
Sbjct: 400 LPYKVTQDELKEVFE---DAAEIRLVS-KD-GKSKGIAYIEFKTEADAEKTFEEKQGTEI 454
Query: 171 KGKTIRCSMS--ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV--DTIE-------LIKD 219
G++I + + N+ + G +W+ + V+ ++ +T++ IK
Sbjct: 455 DGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKV 514
Query: 220 PQAPS-RNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPKSTPDHSAAAA 277
PQ + +++G+AF+ + A + +++ + S N + ++G + P+ +P+ A +
Sbjct: 515 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN---ARS 568
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEV-TKVVTPPGKSGKRDFGFIHYAERSSALKA 336
K L+VK L E+TT + LKE F G V ++VT + FGF+ + A KA
Sbjct: 569 QPSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDA-KA 625
Query: 337 IKDT-EKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAG 388
K+ E EIDG + + A+P+ G G G G G F G
Sbjct: 626 AKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGG 678
Score = 160 (61.4 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 78/351 (22%), Positives = 157/351 (44%)
Query: 36 VGRDGNVKQNDEDEEYDAETSKEDQSPGANGSHINTED---AVEDEDKRTASISEDE--- 89
V D + +++DEDE+ D + ED + E+ E KR +++ +
Sbjct: 232 VAEDEDEEEDDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAP 291
Query: 90 KEKHDQLLALPPHGS-EVFIGGLPKDASEEDLRDLCEPIGEVFEVG--LVKDKDSGESKG 146
+ K ++ P + +F+G L + S +L+ I +VF V D G ++
Sbjct: 292 EAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKT---GISDVFAKNDLAVVDVRIGMTRK 348
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNN----RLFIGNVPKSWTEKEFRK 202
F +V F S E ++A++ K F G I+ + + R + K+ K +
Sbjct: 349 FGYVDFESAEDLEKALELTGLKVF-GNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQD 407
Query: 203 VIEDVGPGVDTIELI-KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTV 261
+++V I L+ KD +++G A++ + A A+ + ++ ++DG + ++
Sbjct: 408 ELKEVFEDAAEIRLVSKD----GKSKGIAYIEFKTEADAEKTFEEKQGT--EIDGRSISL 461
Query: 262 SWAEPKS-TPDHSAAAAS----QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGK 316
+ K D+ S + K L + NL + T + L+E+F++ T + P +
Sbjct: 462 YYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQ 518
Query: 317 SGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ--TNKRTE 364
+GK + + FI +A A +A+ K EI+G+ + + L P+ N R++
Sbjct: 519 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQ 569
Score = 138 (53.6 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 74/323 (22%), Positives = 132/323 (40%)
Query: 43 KQNDEDEEYDA-ETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPP 101
+++DEDE+ D E A ED +DED E++ + + + P
Sbjct: 157 EEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPA 216
Query: 102 HGSE------VFIGGLPKDASEE-DLRDLCEPIGEVFEVGLVKDKDSGESKGFA-----F 149
G + V + +D EE D D + E E +D + E +
Sbjct: 217 KGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEA 276
Query: 150 VAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
R KE+AK+ + + K + + + T LF+GN+ + + E + I DV
Sbjct: 277 PGKRKKEMAKQK----AAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFA 332
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST 269
D + D + R F +V + + A+ + + K+ GN + +PK
Sbjct: 333 KNDLA--VVDVRI-GMTRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGK 384
Query: 270 PDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAE 329
A + L KNLP T +LKE+F+ E+ ++V+ GKS + +I +
Sbjct: 385 DSKKERDA---RTLLAKNLPYKVTQDELKEVFEDAAEI-RLVSKDGKS--KGIAYIEFKT 438
Query: 330 RSSALKAIKDTEKYEIDGQVLEV 352
+ A K ++ + EIDG+ + +
Sbjct: 439 EADAEKTFEEKQGTEIDGRSISL 461
Score = 107 (42.7 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+F+ GL +D +EE L++ + G V +V D+++G SKGF FV F S+E AK A + +
Sbjct: 574 LFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 630
Query: 166 CSKDFKGKTI 175
+ G +
Sbjct: 631 EDGEIDGNKV 640
Score = 67 (28.6 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 41 NVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASI---SEDEKEKHDQ 95
N K+ D DEE D + S+ED+ + ED +E + A+ SEDE ++ D+
Sbjct: 139 NAKKEDSDEEED-DDSEEDEEDDEDEDE--DEDEIEPAAMKAAAAAPASEDEDDEDDE 193
Score = 64 (27.6 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 39 DGNVKQNDEDEEYDAETSKEDQSPGANGSH------INTEDAVEDEDKRTASISEDEKEK 92
D + + +D+DEE D+E + +P A G + ++ EDED+ ED+ +
Sbjct: 192 DEDDEDDDDDEEDDSEEEAMETTP-AKGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDD 250
Query: 93 HD 94
D
Sbjct: 251 ED 252
Score = 57 (25.1 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 63 GA-NGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLR 121
GA NG + ED+ E+ED + ED++++ + + P + P E+D
Sbjct: 133 GAKNGKNAKKEDSDEEEDDDSEEDEEDDEDEDEDEDEIEPAAMKA-AAAAPASEDEDDED 191
Query: 122 D 122
D
Sbjct: 192 D 192
Score = 51 (23.0 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 41 NVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEK 92
NV + DEDEE D E +D ED +D+D+ E+E+E+
Sbjct: 231 NVAE-DEDEEEDDEDEDDDDD----------EDDEDDDDEDDEEEEEEEEEE 271
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 231 (86.4 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 77/302 (25%), Positives = 138/302 (45%)
Query: 75 VEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVG 134
++D+ K+ A+ SE + ++ + +++G L SE L D+ PIG V +
Sbjct: 17 IQDDQKQAATGSESQSVENSS--------ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIR 68
Query: 135 LVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN--------NRL 186
+ +D + S G+A+V F E ++AI++L KG+ R S+ + +
Sbjct: 69 VCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNI 128
Query: 187 FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQK 246
FI N+ K G + + ++ D S+ GF FV + A ++
Sbjct: 129 FIKNLHPDIDNKALYDTFSVFGDILSS-KIATDENGKSK--GFGFVHFEEEGAA---KEA 182
Query: 247 MTSAN-FKLDGN----TPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELF 301
+ + N L+G P +S E S + + A + LYVKN+ TT +Q +ELF
Sbjct: 183 IDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTN---LYVKNINSETTDEQFQELF 239
Query: 302 QRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTN 360
+ G + GK + FGF++Y + A+KA++ E++G+ L V A+ + N
Sbjct: 240 AKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKK-N 298
Query: 361 KR 362
+R
Sbjct: 299 ER 300
Score = 147 (56.8 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 50/191 (26%), Positives = 94/191 (49%)
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
L++ N+ T+++F+++ GP V L KD A + +GF FV Y + A + +
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSA-SLEKD--ADGKLKGFGFVNYEKHEDAVKAVE 277
Query: 246 KMTSANFKLDGNTPTVSWAEPKSTPDH-----------SAAAASQVKALYVKNLPENTTT 294
+ + +L+G V A+ K+ H A Q L+VKNL ++
Sbjct: 278 ALNDS--ELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDD 335
Query: 295 KQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVA 353
++L+E F +G +T ++GK + FGF+ ++ A KAI + + + G+ L VA
Sbjct: 336 EKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 395
Query: 354 LARPQTNKRTE 364
+A+ + +R++
Sbjct: 396 IAQRKDVRRSQ 406
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 213 (80.0 bits), Expect = 2.5e-16, Sum P(3) = 2.5e-16
Identities = 74/287 (25%), Positives = 137/287 (47%)
Query: 116 SEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
+E++L+++ E + E+ LV G SKG A++ F+S+ A++ ++E + G+++
Sbjct: 409 TEDELKEVFE---DAVEIRLVSQ--DGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 463
Query: 176 RCSMS-ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV--DTIE-------LIKDPQAP-S 224
+ E R +W+ + V+ ++ +T++ IK PQ P
Sbjct: 464 SLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHG 523
Query: 225 RNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAEPKSTPDHSAAAASQVKAL 283
+++G+AF+ + A + +++ + S N +++G T + P+ +P+ A + K L
Sbjct: 524 KSKGYAFIEF---ASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPN---ARSQPSKTL 577
Query: 284 YVKNLPENTTTKQLKELFQRHGEV-TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT-E 341
+VK L E+TT + LKE F+ G V ++VT + FGF+ + A KA K+ E
Sbjct: 578 FVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAME 634
Query: 342 KYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAG 388
EIDG + + A+P+ G G G G G F G
Sbjct: 635 DGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGG 681
Score = 149 (57.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 77/338 (22%), Positives = 145/338 (42%)
Query: 39 DGNVKQNDEDEEYDAETSK----EDQSPGANGSHINTEDAVEDEDKRTASISEDEKE-KH 93
D + + DE++E++ K +P A S E+ +DED E+E++
Sbjct: 155 DDSDEDEDEEDEFEPPVVKGVKPAKAAPAAPASEDEDEEDDDDEDDDDDDEEEEEEDDSE 214
Query: 94 DQLLALPP-HGSEVFIGGLPKDAS-----EEDLRDLCEPIGEVFEVGLVKDKDSGESKGF 147
++++ + P G + +P A EED D + + E D+D E +
Sbjct: 215 EEVMEITPAKGKKTPAKVVPVKAKSVAEEEEDDEDDEDEEEDEDEEDEEDDEDEDEEEEE 274
Query: 148 AFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDV 207
V + K + + + K + I S T LFIGN+ + + E + I ++
Sbjct: 275 EPVKAAPGKRKKEMTKQKEAPEAKKQKIEGSEPTTPFNLFIGNLNPNKSVAELKVAISEL 334
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK 267
D + D + + NR F +V + + A+ + + K+ GN + +PK
Sbjct: 335 FAKNDLAAV--DVRTGT-NRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPK 386
Query: 268 STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHY 327
AA + L KNL N T +LKE+F+ E+ ++V+ G+S + +I +
Sbjct: 387 GRDSKKVRAA---RTLLAKNLSFNITEDELKEVFEDAVEI-RLVSQDGRS--KGIAYIEF 440
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALA--RPQTNKRT 363
+ A K +++ + EIDG+ + + + Q +RT
Sbjct: 441 KSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERT 478
Score = 110 (43.8 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+F+ GL +D +EE L++ E G V +V D+++G SKGF FV F S+E AK A + +
Sbjct: 577 LFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 633
Query: 166 CSKDFKGKTI 175
+ G +
Sbjct: 634 EDGEIDGNKV 643
Score = 61 (26.5 bits), Expect = 2.5e-16, Sum P(3) = 2.5e-16
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 63 GA-NGSHINTEDAVEDEDKRTASISEDEKEKHDQ 95
GA NG + ED+ EDED+ S++++++ D+
Sbjct: 133 GAKNGKNAKKEDSDEDEDEEDEDDSDEDEDEEDE 166
Score = 54 (24.1 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 37 GRDGNVKQNDEDE-EYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHD 94
G++ + +DEDE E D + S ED+ + + A SEDE E+ D
Sbjct: 137 GKNAKKEDSDEDEDEEDEDDSDEDEDEEDEFEPPVVKGVKPAKAAPAAPASEDEDEEDD 195
Score = 38 (18.4 bits), Expect = 2.5e-16, Sum P(3) = 2.5e-16
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 43 KQNDEDEEYDAETSKEDQSPG 63
K+ +ED E + + ED S G
Sbjct: 22 KEVEEDSEDEEMSEDEDDSSG 42
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 211 (79.3 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 75/293 (25%), Positives = 142/293 (48%)
Query: 111 LPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF 170
LP ++++L+++ E + E+ LV KD G+SKG A++ F+++ A++ +E +
Sbjct: 402 LPYKVTQDELKEVFE---DAAEIRLVS-KD-GKSKGIAYIEFKTEADAEKTFEEKQGTEI 456
Query: 171 KGKTIRCSMS--ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV--DTIE-------LIKD 219
G++I + + N+ + G +W+ + V+ ++ +T++ IK
Sbjct: 457 DGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKV 516
Query: 220 PQAPS-RNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPKSTPDHSAAAA 277
PQ + +++G+AF+ + A + +++ + S N + ++G + P+ +P+ A +
Sbjct: 517 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN---ARS 570
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEV-TKVVTPPGKSGKRDFGFIHYAERSSALKA 336
K L+VK L E+TT + LKE F G V ++VT + FGF+ + A KA
Sbjct: 571 QPSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDA-KA 627
Query: 337 IKDT-EKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAG 388
K+ E EIDG + + A+P+ G G G G G F G
Sbjct: 628 AKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGG 680
Score = 189 (71.6 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 83/345 (24%), Positives = 159/345 (46%)
Query: 39 DGNVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLA 98
D + ++DEDE+ + E +E++ P ++ K+ A+ E +K+K +
Sbjct: 251 DDDDDEDDEDEDDEEEEEEEEEEPVKEAPGKRKKEMA----KQKAA-PEAKKQKVEG--T 303
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVG--LVKDKDSGESKGFAFVAFRSKE 156
P +F+G L + S +L+ I +VF V D G ++ F +V F S E
Sbjct: 304 EPTTAFNLFVGNLNFNKSAPELKT---GISDVFAKNDLAVVDVRIGMTRKFGYVDFESAE 360
Query: 157 VAKRAIDELCSKDFKGKTIRC-------SMSETNNRLFIG-NVPKSWTEKEFRKVIEDVG 208
++A++ K F G I+ S E + R + N+P T+ E ++V ED
Sbjct: 361 DLEKALELTGLKVF-GNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAA 419
Query: 209 PGVDTIELI-KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK 267
I L+ KD +++G A++ + A A+ + ++ ++DG + ++ + K
Sbjct: 420 E----IRLVSKD----GKSKGIAYIEFKTEADAEKTFEEKQGT--EIDGRSISLYYTGEK 469
Query: 268 S-TPDHSAAAAS----QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RD 321
D+ S + K L + NL + T + L+E+F++ T + P ++GK +
Sbjct: 470 GQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKG 526
Query: 322 FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ--TNKRTE 364
+ FI +A A +A+ K EI+G+ + + L P+ N R++
Sbjct: 527 YAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQ 571
Score = 133 (51.9 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 71/328 (21%), Positives = 135/328 (41%)
Query: 44 QNDEDEEYDAETSKEDQSPGANGSHI-----NTEDAVEDEDKRTASISEDEKEKHDQLLA 98
+ DED++ D + +++ P A + ED +DED E++ + + +
Sbjct: 154 EEDEDDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDEDDDEEDDSEEEAMET 213
Query: 99 LPPHGSE------VFIGGLPKDASEE--------DLRDLCEPIGEVFEVGLVKDKDSGES 144
P G + V + +D EE D D + + E ++++ E
Sbjct: 214 TPAKGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDDDDDDEDDEDEDDEEEEEEEEEE 273
Query: 145 KGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVI 204
R KE+AK+ + + K + + + T LF+GN+ + + E + I
Sbjct: 274 PVKEAPGKRKKEMAKQK----AAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGI 329
Query: 205 EDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWA 264
DV D + D + R F +V + + A+ + + K+ GN +
Sbjct: 330 SDVFAKNDLA--VVDVRI-GMTRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLE 381
Query: 265 EPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGF 324
+PK A + L KNLP T +LKE+F+ E+ ++V+ GKS + +
Sbjct: 382 KPKGKDSKKERDA---RTLLAKNLPYKVTQDELKEVFEDAAEI-RLVSKDGKS--KGIAY 435
Query: 325 IHYAERSSALKAIKDTEKYEIDGQVLEV 352
I + + A K ++ + EIDG+ + +
Sbjct: 436 IEFKTEADAEKTFEEKQGTEIDGRSISL 463
Score = 127 (49.8 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 67/326 (20%), Positives = 135/326 (41%)
Query: 44 QNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDE---KEKHDQLLALP 100
++D+D++ D + ED+ E E KR +++ + + K ++
Sbjct: 245 EDDDDDDDDDDEDDEDEDDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTE 304
Query: 101 PHGS-EVFIGGLPKDASEEDLRDLCEPIGEVFEVG--LVKDKDSGESKGFAFVAFRSKEV 157
P + +F+G L + S +L+ I +VF V D G ++ F +V F S E
Sbjct: 305 PTTAFNLFVGNLNFNKSAPELKT---GISDVFAKNDLAVVDVRIGMTRKFGYVDFESAED 361
Query: 158 AKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV--DTIE 215
++A++ K F G I+ + + + + KV +D V D E
Sbjct: 362 LEKALELTGLKVF-GNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAE 420
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
I+ +++G A++ + A A+ + ++ ++DG + ++ + K
Sbjct: 421 -IRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGT--EIDGRSISLYYTGEKGQNQDYRG 477
Query: 276 AASQVKALYVKNLP-ENTTTKQLKELFQRHGE-VTKVVTPPGKSGK-RDFGFIHYAERSS 332
+ + K L N + +E Q E T + P ++GK + + FI +A
Sbjct: 478 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFED 537
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQ 358
A +A+ K EI+G+ + + L P+
Sbjct: 538 AKEALNSCNKREIEGRAIRLELQGPR 563
Score = 107 (42.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+F+ GL +D +EE L++ + G V +V D+++G SKGF FV F S+E AK A + +
Sbjct: 576 LFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 632
Query: 166 CSKDFKGKTI 175
+ G +
Sbjct: 633 EDGEIDGNKV 642
Score = 64 (27.6 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 41 NVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASI---SEDEKEKHDQ 95
N K+ D DEE + + S+ED+ + ED +E + A+ SEDE ++ D+
Sbjct: 139 NAKKEDSDEE-EEDDSEEDEDDDEDEDE--DEDEIEPAAMKAAAAAPASEDEDDEDDE 193
Score = 62 (26.9 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 39 DGNVKQNDEDEEYDAETSKEDQSPGANGSH------INTEDAVEDEDKRTASISEDEKEK 92
D + + D+DEE D+E + +P A G + ++ EDED+ ED+ +
Sbjct: 192 DEDDEDEDDDEEDDSEEEAMETTP-AKGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDD 250
Query: 93 HD 94
D
Sbjct: 251 DD 252
Score = 56 (24.8 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 39 DGNVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHD 94
D ++DEDE+ D E E+++ + + A + + +++EDE E+ D
Sbjct: 188 DDEDDEDDEDEDDDEEDDSEEEAMETTPA--KGKKAAKVVPVKAKNVAEDEDEEED 241
Score = 52 (23.4 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 41 NVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALP 100
NV + DEDEE D E +D + +D +DED+ E+E+E+ + + P
Sbjct: 231 NVAE-DEDEEEDDEDEDDDDD--------DDDDDEDDEDEDDEE--EEEEEEEEPVKEAP 279
Score = 51 (23.0 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
Identities = 18/62 (29%), Positives = 25/62 (40%)
Query: 63 GA-NGSHINTEDA-VEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDL 120
GA NG + ED+ E+ED +DE E D+ P +D +ED
Sbjct: 133 GAKNGKNAKKEDSDEEEEDDSEEDEDDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDD 192
Query: 121 RD 122
D
Sbjct: 193 ED 194
Score = 37 (18.1 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 61 SPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQ 95
+PG G+ I + A ++ + E+E++ ++
Sbjct: 121 TPGKKGAAIPAKGAKNGKNAKKEDSDEEEEDDSEE 155
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 213 (80.0 bits), Expect = 2.6e-16, Sum P(3) = 2.6e-16
Identities = 74/287 (25%), Positives = 137/287 (47%)
Query: 116 SEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
+E++L+++ E + E+ LV G SKG A++ F+S+ A++ ++E + G+++
Sbjct: 410 TEDELKEVFE---DAVEIRLVSQ--DGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 464
Query: 176 RCSMS-ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV--DTIE-------LIKDPQAP-S 224
+ E R +W+ + V+ ++ +T++ IK PQ P
Sbjct: 465 SLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHG 524
Query: 225 RNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAEPKSTPDHSAAAASQVKAL 283
+++G+AF+ + A + +++ + S N +++G T + P+ +P+ A + K L
Sbjct: 525 KSKGYAFIEF---ASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPN---ARSQPSKTL 578
Query: 284 YVKNLPENTTTKQLKELFQRHGEV-TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT-E 341
+VK L E+TT + LKE F+ G V ++VT + FGF+ + A KA K+ E
Sbjct: 579 FVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAME 635
Query: 342 KYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAG 388
EIDG + + A+P+ G G G G G F G
Sbjct: 636 DGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGG 682
Score = 147 (56.8 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 78/341 (22%), Positives = 147/341 (43%)
Query: 39 DGNVKQNDEDEEYDAETSK----EDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHD 94
D + + DE++E++ K +P A S ED +D+D+ ++E+E+ D
Sbjct: 155 DDSDEDEDEEDEFEPPVVKGVKPAKAAPAAPASE--DEDEEDDDDEEDDDDDDEEEEEED 212
Query: 95 ----QLLALPP-HGSEVFIGGLPKDAS-----EEDLRDLCEPIGEVFEVGLVKDKDSGES 144
+++ + P G + +P A EED D + + E D+D E
Sbjct: 213 DSEEEVMEITPAKGKKTPAKVVPVKAKSVAEEEEDDEDDEDEEEDEDEEDEEDDEDEDEE 272
Query: 145 KGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVI 204
+ V + K + + + K + I S T LFIGN+ + + E + I
Sbjct: 273 EEEEPVKAAPGKRKKEMTKQKEAPEAKKQKIEGSEPTTPFNLFIGNLNPNKSVAELKVAI 332
Query: 205 EDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWA 264
++ D + D + + NR F +V + + A+ + + K+ GN +
Sbjct: 333 SELFAKNDLAAV--DVRTGT-NRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLE 384
Query: 265 EPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGF 324
+PK AA + L KNL N T +LKE+F+ E+ ++V+ G+S + +
Sbjct: 385 KPKGRDSKKVRAA---RTLLAKNLSFNITEDELKEVFEDAVEI-RLVSQDGRS--KGIAY 438
Query: 325 IHYAERSSALKAIKDTEKYEIDGQVLEVALA--RPQTNKRT 363
I + + A K +++ + EIDG+ + + + Q +RT
Sbjct: 439 IEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERT 479
Score = 110 (43.8 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+F+ GL +D +EE L++ E G V +V D+++G SKGF FV F S+E AK A + +
Sbjct: 578 LFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 634
Query: 166 CSKDFKGKTI 175
+ G +
Sbjct: 635 EDGEIDGNKV 644
Score = 61 (26.5 bits), Expect = 2.6e-16, Sum P(3) = 2.6e-16
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 63 GA-NGSHINTEDAVEDEDKRTASISEDEKEKHDQ 95
GA NG + ED+ EDED+ S++++++ D+
Sbjct: 133 GAKNGKNAKKEDSDEDEDEEDEDDSDEDEDEEDE 166
Score = 54 (24.1 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 37 GRDGNVKQNDEDE-EYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHD 94
G++ + +DEDE E D + S ED+ + + A SEDE E+ D
Sbjct: 137 GKNAKKEDSDEDEDEEDEDDSDEDEDEEDEFEPPVVKGVKPAKAAPAAPASEDEDEEDD 195
Score = 38 (18.4 bits), Expect = 2.6e-16, Sum P(3) = 2.6e-16
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 43 KQNDEDEEYDAETSKEDQSPG 63
K+ +ED E + + ED S G
Sbjct: 22 KEVEEDSEDEEMSEDEDDSSG 42
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 222 (83.2 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 72/269 (26%), Positives = 127/269 (47%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRLF---IGNV-PKSWTEKEFRKVIEDVGPGVDTIELIKD 219
+ + KG+ IR S+ + L +GN+ K+ + K + D I K
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA---AA 276
+RGF FV + + A +Q +T+ N L N V KS + A
Sbjct: 131 VCDDHGSRGFGFVHFETHEAA---QQAITTMNGMLL-NDRKVFVGHFKSRREREVELGAR 186
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERSSALK 335
A + +YVKNL + + L++LF R G++ V SG R FGF+++ + A K
Sbjct: 187 AMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQK 246
Query: 336 AIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+ D E+ G++L V A+ + +++E
Sbjct: 247 AVMDMNGKEVSGRLLYVGRAQKRVERQSE 275
Score = 125 (49.1 bits), Expect = 1.9e-11, Sum P(3) = 1.9e-11
Identities = 26/89 (29%), Positives = 51/89 (57%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ +E+ +L A + +++ L D E+ L+DL G++ V +++D DSG S+G
Sbjct: 174 KSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD-DSGHSRG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
F FV F+ E A++A+ ++ K+ G+ +
Sbjct: 233 FGFVNFQKHEEAQKAVMDMNGKEVSGRLL 261
Score = 100 (40.3 bits), Expect = 1.9e-11, Sum P(3) = 1.9e-11
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
LYVKNL ++ ++L++ F +G +T KV+T G S + FGF+ ++ A KA+ +
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHS--KGFGFVCFSSPEEATKAVTEM 353
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
+ + L VALA+ + ++
Sbjct: 354 NGRILGTKPLYVALAQRKEERK 375
Score = 50 (22.7 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 18/58 (31%), Positives = 23/58 (39%)
Query: 369 CAAGVHPS---GLPHAGYGSFAGTAYXXXXXXXXXXXXXXXQQPMIYGRGQMPAGMHM 423
C AG++P G PH GS +G QP + R Q PAG H+
Sbjct: 509 CQAGLYPGATPGAPHPKSGSLSGP-----------NSPAYLLQPTLVPRPQEPAGPHV 555
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 211 (79.3 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 75/293 (25%), Positives = 142/293 (48%)
Query: 111 LPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF 170
LP ++++L+++ E + E+ LV KD G+SKG A++ F+++ A++ +E +
Sbjct: 401 LPYKVTQDELKEVFE---DAAEIRLVS-KD-GKSKGIAYIEFKTEADAEKTFEEKQGTEI 455
Query: 171 KGKTIRCSMS--ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV--DTIE-------LIKD 219
G++I + + N+ + G +W+ + V+ ++ +T++ IK
Sbjct: 456 DGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKV 515
Query: 220 PQAPS-RNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPKSTPDHSAAAA 277
PQ + +++G+AF+ + A + +++ + S N + ++G + P+ +P+ A +
Sbjct: 516 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN---ARS 569
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEV-TKVVTPPGKSGKRDFGFIHYAERSSALKA 336
K L+VK L E+TT + LKE F G V ++VT + FGF+ + A KA
Sbjct: 570 QPSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDA-KA 626
Query: 337 IKDT-EKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAG 388
K+ E EIDG + + A+P+ G G G G G F G
Sbjct: 627 AKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGG 679
Score = 192 (72.6 bits), Expect = 5.9e-12, P = 5.9e-12
Identities = 84/355 (23%), Positives = 161/355 (45%)
Query: 36 VGRDGNVKQNDEDEEYDAETSKEDQSPGANGSHINTED---AVEDEDKRTASISEDE--- 89
V D + +++DEDE+ D + ED+ E+ E KR +++ +
Sbjct: 233 VAEDEDEEEDDEDEDDDDDEDDEDEDDDDEDEEEEEEEEEPVKEAPGKRKKEMAKQKAAP 292
Query: 90 KEKHDQLLALPPHGS-EVFIGGLPKDASEEDLRDLCEPIGEVFEVG--LVKDKDSGESKG 146
+ K ++ P + +F+G L + S +L+ I +VF V D G ++
Sbjct: 293 EAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKT---GISDVFAKNDLAVVDVRIGMTRK 349
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRC-------SMSETNNRLFIG-NVPKSWTEK 198
F +V F S E ++A++ K F G I+ S E + R + N+P T+
Sbjct: 350 FGYVDFESAEDLEKALELTGLKVF-GNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQD 408
Query: 199 EFRKVIEDVGPGVDTIELI-KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGN 257
E ++V ED I L+ KD +++G A++ + A A+ + ++ ++DG
Sbjct: 409 ELKEVFEDAAE----IRLVSKD----GKSKGIAYIEFKTEADAEKTFEEKQGT--EIDGR 458
Query: 258 TPTVSWAEPKS-TPDHSAAAAS----QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT 312
+ ++ + K D+ S + K L + NL + T + L+E+F++ T +
Sbjct: 459 SISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKV 515
Query: 313 PPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ--TNKRTE 364
P ++GK + + FI +A A +A+ K EI+G+ + + L P+ N R++
Sbjct: 516 PQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQ 570
Score = 137 (53.3 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 75/323 (23%), Positives = 132/323 (40%)
Query: 44 QNDEDEEYDA-ETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLL-ALPP 101
++DEDE+ D E A ED +DED ++E + ++ + P
Sbjct: 158 EDDEDEDEDEDEIEPAVMKAAAAAPASEDEDDEDDEDDEDEDDDDEEDDSEEEAMETTPA 217
Query: 102 HGSE------VFIGGLPKDASEE-DLRDLCEPIGEVFEVGLVKDKDSGESKGFA-----F 149
G + V + +D EE D D + E E D+D E +
Sbjct: 218 KGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDEDDEDEDDDDEDEEEEEEEEEPVKEA 277
Query: 150 VAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
R KE+AK+ + + K + + + T LF+GN+ + + E + I DV
Sbjct: 278 PGKRKKEMAKQK----AAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFA 333
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST 269
D + D + R F +V + + A+ + + K+ GN + +PK
Sbjct: 334 KNDLA--VVDVRI-GMTRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGK 385
Query: 270 PDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAE 329
A + L KNLP T +LKE+F+ E+ ++V+ GKS + +I +
Sbjct: 386 DSKKERDA---RTLLAKNLPYKVTQDELKEVFEDAAEI-RLVSKDGKS--KGIAYIEFKT 439
Query: 330 RSSALKAIKDTEKYEIDGQVLEV 352
+ A K ++ + EIDG+ + +
Sbjct: 440 EADAEKTFEEKQGTEIDGRSISL 462
Score = 107 (42.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+F+ GL +D +EE L++ + G V +V D+++G SKGF FV F S+E AK A + +
Sbjct: 575 LFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 631
Query: 166 CSKDFKGKTI 175
+ G +
Sbjct: 632 EDGEIDGNKV 641
Score = 63 (27.2 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 37 GRDGNVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQ 95
G++ + +DE+EE D+E ED + E AV + A SEDE ++ D+
Sbjct: 137 GKNAKKEDSDEEEEDDSEEDDEDDED-EDEDEDEIEPAVM-KAAAAAPASEDEDDEDDE 193
Score = 56 (24.8 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 41 NVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDK 80
NV + DEDEE D E +D + ED E+E++
Sbjct: 232 NVAE-DEDEEEDDEDEDDDDDEDDEDEDDDDEDEEEEEEE 270
Score = 54 (24.1 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 43 KQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQ 95
+++DED+E D E ED+ A A EDED EDE + ++
Sbjct: 154 EEDDEDDE-D-EDEDEDEIEPAVMKAAAAAPASEDEDDEDDEDDEDEDDDDEE 204
Score = 50 (22.7 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 63 GA-NGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLR 121
GA NG + ED+ E+E+ + ED++++ + + P + P E+D
Sbjct: 133 GAKNGKNAKKEDSDEEEEDDSEEDDEDDEDEDEDEDEIEPAVMKA-AAAAPASEDEDDED 191
Query: 122 D 122
D
Sbjct: 192 D 192
Score = 37 (18.1 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 61 SPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQ 95
+PG G+ I + A ++ + E+E++ ++
Sbjct: 121 TPGKKGAAIPAKGAKNGKNAKKEDSDEEEEDDSEE 155
>ZFIN|ZDB-GENE-110408-50 [details] [associations]
symbol:celf3b "cugbp, Elav-like family member 3b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
Ensembl:ENSDART00000024206 Uniprot:E7F293
Length = 442
Score = 183 (69.5 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 43/146 (29%), Positives = 85/146 (58%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
P ++FIG +P++ E+DL+ + E G+++E+ ++KDK +G KG AF+ + ++E A +
Sbjct: 4 PDAIKLFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIK 63
Query: 161 AIDEL-CSKDFKG--KTIRCSMSETNNR-----LFIGNVPKSWTEKEFRKVIEDVGPGVD 212
A L S + G + I+ +++ R LF+G + K ++++ RK+ E G G+D
Sbjct: 64 AQSALHYSSGYSGMNRPIQVKPADSEGRGEDRKLFVGMLGKQQSDEDVRKIFEPFG-GID 122
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNA 238
+++ P S+ G AFV + +++
Sbjct: 123 ECTVLRGPDGTSK-AGCAFVKFQSHS 147
Score = 107 (42.7 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+G L K S+ED+R + EP G + E +++ D G AFV F+S A+ AI+
Sbjct: 96 KLFVGMLGKQQSDEDVRKIFEPFGGIDECTVLRGPDGTSKAGCAFVKFQSHSEAQSAINS 155
Query: 165 L 165
L
Sbjct: 156 L 156
Score = 87 (35.7 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
+++ +LP+ T ++ ++F G V KV + + FGF+ + +SA AI+
Sbjct: 359 VFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQTAIQAM 418
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
++I + L+V L RP+ R
Sbjct: 419 NGFQIGMKRLKVQLKRPKDANR 440
Score = 59 (25.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
+FI ++P+ +T+ E ++ G V + ++ D +A ++++ F FV + N A A + Q
Sbjct: 359 VFIYHLPQEFTDSEMLQMFLPFG-NVISAKVFVD-RATNQSKCFGFVSFDNPASAQTAIQ 416
Query: 246 KMTSANFKLDGNTPTVSWAEPK 267
M F++ V PK
Sbjct: 417 AMNG--FQIGMKRLKVQLKRPK 436
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 228 (85.3 bits), Expect = 4.2e-16, P = 4.2e-16
Identities = 70/269 (26%), Positives = 125/269 (46%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D+ + S G+A V F+ E A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRLF---IGNV-PKSWTEKEFRKVIEDVGPGVDTIELIKD 219
+ KGK +R S+ + L +GN+ K+ K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKV 130
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA---AA 276
+ ++G+ FV + A+ + +KM N V KS D A A
Sbjct: 131 VCDENGSKGYGFVHFETQEEAERAIEKMNGMFL----NDRKVFVGRFKSRRDRQAELGAR 186
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALK 335
A + +Y+KNL E+ ++L++LF R G V +SGK + FGF+ + A K
Sbjct: 187 AKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARK 246
Query: 336 AIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+ + +++G+ + V A+ + ++TE
Sbjct: 247 AVDEMNGKDLNGKQIYVGRAQKKVERQTE 275
Score = 145 (56.1 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
Identities = 42/129 (32%), Positives = 61/129 (47%)
Query: 58 EDQSPGANGSHINTEDAVEDE-DKRTASISEDEK-------EKHDQLLALPPHGSE---V 106
E+ S G H T++ E +K D K + D+ L E V
Sbjct: 134 ENGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I L +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNLGEDMDDERLQDLFSRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEMN 252
Query: 167 SKDFKGKTI 175
KD GK I
Sbjct: 253 GKDLNGKQI 261
Score = 92 (37.4 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
LYVKNL + ++L++ F G +T KV G+S + FGF+ ++ A KA+ +
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRS--KGFGFVCFSSPEEATKAVTEM 363
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
+ + L VALA+ + ++
Sbjct: 364 NGRIVATKPLYVALAQRKEERQ 385
Score = 49 (22.3 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 22/96 (22%), Positives = 42/96 (43%)
Query: 173 KTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFV 232
+++RC N L++ N+ ++ RK G TI K R++GF FV
Sbjct: 297 RSVRCQ--GVN--LYVKNLDDGIDDERLRKEFSPFG----TITSAKVTMEGGRSKGFGFV 348
Query: 233 LYYNNACADYSRQKMTSANFKLDGNTPT-VSWAEPK 267
+ + + + + +T N ++ P V+ A+ K
Sbjct: 349 CF---SSPEEATKAVTEMNGRIVATKPLYVALAQRK 381
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 230 (86.0 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 66/270 (24%), Positives = 123/270 (45%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L DA+E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + +FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D ++G+ FV + A+ + +KM D + K A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGA 185
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ + A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + E++G+ + V A+ + ++TE
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 144 (55.7 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 41/129 (31%), Positives = 63/129 (48%)
Query: 58 EDQSPGANGSHINTEDAVEDE-DKRTASISEDEK----------EKHDQLLALPPHGSEV 106
E+ S G H T++A E +K + D K E+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
Score = 38 (18.4 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 407 QQPMIYGRGQMPAGMHMVPMVLP 429
QQP ++ +GQ P M+ P
Sbjct: 533 QQPAVHVQGQEPLTASMLASAPP 555
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 227 (85.0 bits), Expect = 5.3e-16, P = 5.3e-16
Identities = 69/266 (25%), Positives = 119/266 (44%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRLF---IGNVPKSWTEKEF-RKVIEDVGPGVDTIELIKD 219
+ KGK IR S+ + L +GNV +K K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
+ ++G+AFV + A+ + +KM D + K A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAANKAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGAKAKE 189
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIK 338
+Y+KN E + L+ELF + G+ V SGK + FGF+ Y + A KA++
Sbjct: 190 FTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVE 249
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ E+ G+ + V A+ + ++ E
Sbjct: 250 EMNGKEMSGKSIFVGRAQKKVERQAE 275
Score = 137 (53.3 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 29/89 (32%), Positives = 52/89 (58%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E+LR+L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
F FV++ E A +A++E+ K+ GK+I
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKSI 261
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 214 (80.4 bits), Expect = 5.4e-16, Sum P(2) = 5.4e-16
Identities = 86/347 (24%), Positives = 164/347 (47%)
Query: 59 DQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEE 118
D++ NG + + ++ K S+ E++KE+ + L F+ LP +E+
Sbjct: 333 DKALQLNGKKLMGLEIKLEKAKSKESLKENKKERDARTL---------FVKNLPYRVTED 383
Query: 119 DLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178
+++++ E EV LV +K+ G SKG A++ F+++ A++A++E + G+ +
Sbjct: 384 EMKNVFE---NALEVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVID 439
Query: 179 MSETNNRLFIGNVPKSWTEKEFRKVIED---VGPGVDTI-EL------IKDPQA-PSRNR 227
+ ++ K E+E + +I + +T+ EL IK PQ R +
Sbjct: 440 YTGEKSQQ---ESQKGGGERESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPK 496
Query: 228 GFAFVLYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAEP---KSTPDHSAAAASQVKAL 283
G+AFV + A+ +++ + S N +++G + ++ P K + Q K L
Sbjct: 497 GYAFVEF---PTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTL 553
Query: 284 YVKNLPENTTTKQLKELFQRHGEVT-KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT-E 341
+V+ L E+TT + L+E F+ G ++ ++VT + FGF+ ++ A KA K+ E
Sbjct: 554 FVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDA-KAAKEAME 610
Query: 342 KYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAG 388
EIDG + + A+P+ + G + G G G G F G
Sbjct: 611 DGEIDGNKVTLDFAKPKGEFQRGGGFG--GGFGGRGGRGGGRGGFGG 655
Score = 199 (75.1 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 80/339 (23%), Positives = 143/339 (42%)
Query: 39 DGNVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLA 98
D + + DED+E + E ED+ P ++A K A+ S E +K +
Sbjct: 222 DEDEDEEDEDDEEEDEEESEDEKP--------VKEAPGKRKKEMANKSAPEAKKKKTEIK 273
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVF-EVGL-VKDKDSGESKGFAFVAFRSKE 156
P +F+ L E+LR I E F + L V + G SK F +V F S E
Sbjct: 274 APASAFSLFVKNLTPTKDYEELRTA---IKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAE 330
Query: 157 VAKRAIDELCSKDFKGKTIRC-------SMSETNNR-----LFIGNVPKSWTEKEFRKVI 204
+A+ +L K G I+ S+ E LF+ N+P TE E + V
Sbjct: 331 DMDKAL-QLNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVF 389
Query: 205 EDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWA 264
E+ ++ + L+ + + S+ G A++ + A A+ + ++ ++DG + +
Sbjct: 390 ENA---LE-VRLVLNKEGSSK--GMAYIEFKTEAEAEKALEEKQGT--EVDGRAMVIDYT 441
Query: 265 EPKSTPDHSAAAAS-QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDF 322
KS + + K L V NL + + L+ELF++ T + P G+ + +
Sbjct: 442 GEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGY 498
Query: 323 GFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNK 361
F+ + A +A+ EI+G+ + + + P K
Sbjct: 499 AFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQK 537
Score = 126 (49.4 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 68/290 (23%), Positives = 118/290 (40%)
Query: 72 EDAVEDEDKRTASISEDEKEKHDQLLA---LPPHGSEVFIGGLPKDASEEDLRDLCEPIG 128
E+ ED+++ E E E D A P + EED D E
Sbjct: 169 EEEEEDDEEEDEEDDESEDEAMDTTPAPVKKPTPAKATPAKAKAESEDEEDEED--EDED 226
Query: 129 EVFEVGLVKDKDSGESKGFAFVA--FRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRL 186
E E +D++ E + A R KE+A ++ E K + K + S L
Sbjct: 227 EEDEDDEEEDEEESEDEKPVKEAPGKRKKEMANKSAPEAKKKKTEIKAPASAFS-----L 281
Query: 187 FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ- 245
F+ N+ + +E R I++ G ++ + + + S R F +V + + D + Q
Sbjct: 282 FVKNLTPTKDYEELRTAIKEFF-GKKNLQ-VSEVRIGSSKR-FGYVDFLSAEDMDKALQL 338
Query: 246 ---KMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQ 302
K+ KL+ S E K D + L+VKNLP T ++K +F+
Sbjct: 339 NGKKLMGLEIKLEKAKSKESLKENKKERD--------ARTLFVKNLPYRVTEDEMKNVFE 390
Query: 303 RHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEV 352
EV V+ G S + +I + + A KA+++ + E+DG+ + +
Sbjct: 391 NALEVRLVLNKEGSS--KGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVI 438
Score = 123 (48.4 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 56/234 (23%), Positives = 98/234 (41%)
Query: 50 EYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIG 109
E+ E E G+ ++ V D T S+ E +K + +
Sbjct: 412 EFKTEAEAEKALEEKQGTEVDGRAMVIDY---TGEKSQQESQKGGG----ERESKTLIVN 464
Query: 110 GLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKD 169
L ASEE L++L + + + + G KG+AFV F + E AK A++ + +
Sbjct: 465 NLSYAASEETLQELFKKATSI----KMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTE 520
Query: 170 FKGKTIRCSMSET-------NNR---------LFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
+G+ IR S N R LF+ + + TE+ R+ E G +
Sbjct: 521 IEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE----GSIS 576
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK 267
++ D S ++GF FV + + A +++ M ++DGN T+ +A+PK
Sbjct: 577 ARIVTDRDTGS-SKGFGFVDFSSPEDAKAAKEAMEDG--EIDGNKVTLDFAKPK 627
Score = 57 (25.1 bits), Expect = 5.4e-16, Sum P(2) = 5.4e-16
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 38 RDGNVKQNDEDEEYDAETSK-EDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQ 95
++ ++ ++DEE D E + ED++ + + + + + SEDE+++ D+
Sbjct: 165 QESEEEEEEDDEEEDEEDDESEDEAMDTTPAPVKKPTPAKATPAKAKAESEDEEDEEDE 223
Score = 55 (24.4 bits), Expect = 8.7e-16, Sum P(2) = 8.7e-16
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 44 QNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASI-----SEDEKEKHDQ 95
++DE++E + E S E++ P + A K+ A + SE+E+E+ D+
Sbjct: 120 EDDEEDEDEEEESDEEEEPAVPVKPAAKKSAAAVPAKKPAVVPAKQESEEEEEEDDE 176
Score = 54 (24.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 63 GA-NGSHINTEDAVE-DEDKRTASISEDEKEKHDQ 95
GA NG + E++ E DED EDE+E+ D+
Sbjct: 100 GAKNGKNAKKEESEEEDEDDEDDEEDEDEEEESDE 134
Score = 42 (19.8 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 53 AETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDE 89
A+ K + + + ED EDED+ S E+E
Sbjct: 101 AKNGKNAKKEESEEEDEDDEDDEEDEDEEEESDEEEE 137
Score = 41 (19.5 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 43 KQNDEDEEYDAETSKEDQ 60
K+ E+E+ D E +ED+
Sbjct: 109 KEESEEEDEDDEDDEEDE 126
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 214 (80.4 bits), Expect = 5.5e-16, Sum P(2) = 5.5e-16
Identities = 86/347 (24%), Positives = 164/347 (47%)
Query: 59 DQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEE 118
D++ NG + + ++ K S+ E++KE+ + L F+ LP +E+
Sbjct: 335 DKALQLNGKKLMGLEIKLEKAKSKESLKENKKERDARTL---------FVKNLPYRVTED 385
Query: 119 DLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178
+++++ E EV LV +K+ G SKG A++ F+++ A++A++E + G+ +
Sbjct: 386 EMKNVFE---NALEVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVID 441
Query: 179 MSETNNRLFIGNVPKSWTEKEFRKVIED---VGPGVDTI-EL------IKDPQA-PSRNR 227
+ ++ K E+E + +I + +T+ EL IK PQ R +
Sbjct: 442 YTGEKSQQ---ESQKGGGERESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPK 498
Query: 228 GFAFVLYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAEP---KSTPDHSAAAASQVKAL 283
G+AFV + A+ +++ + S N +++G + ++ P K + Q K L
Sbjct: 499 GYAFVEF---PTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTL 555
Query: 284 YVKNLPENTTTKQLKELFQRHGEVT-KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT-E 341
+V+ L E+TT + L+E F+ G ++ ++VT + FGF+ ++ A KA K+ E
Sbjct: 556 FVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDA-KAAKEAME 612
Query: 342 KYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAG 388
EIDG + + A+P+ + G + G G G G F G
Sbjct: 613 DGEIDGNKVTLDFAKPKGEFQRGGGFG--GGFGGRGGRGGGRGGFGG 657
Score = 191 (72.3 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 77/335 (22%), Positives = 141/335 (42%)
Query: 43 KQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPH 102
+ DEDEE D + +ED+ + + ++ S E +K+K + P
Sbjct: 225 EDEDEDEE-DEDDEEEDEEESEDEKPVKEAPGKRKKEMANKSAPEAKKKKTET----PAS 279
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVF-EVGL-VKDKDSGESKGFAFVAFRSKEVAKR 160
+F+ L E+LR I E F + L V + G SK F +V F S E +
Sbjct: 280 AFSLFVKNLTPTKDYEELRTA---IKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDK 336
Query: 161 AIDELCSKDFKGKTIRC-------SMSETNNR-----LFIGNVPKSWTEKEFRKVIEDVG 208
A+ +L K G I+ S+ E LF+ N+P TE E + V E+
Sbjct: 337 AL-QLNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFENA- 394
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
++ + L+ + + S+ G A++ + A A+ + ++ ++DG + + KS
Sbjct: 395 --LE-VRLVLNKEGSSK--GMAYIEFKTEAEAEKALEEKQGT--EVDGRAMVIDYTGEKS 447
Query: 269 TPDHSAAAAS-QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIH 326
+ + K L V NL + + L+ELF++ T + P G+ + + F+
Sbjct: 448 QQESQKGGGERESKTLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVE 504
Query: 327 YAERSSALKAIKDTEKYEIDGQVLEVALARPQTNK 361
+ A +A+ EI+G+ + + + P K
Sbjct: 505 FPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQK 539
Score = 126 (49.4 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 69/290 (23%), Positives = 120/290 (41%)
Query: 72 EDAVEDEDKRTASISEDEKEKHDQLLA---LPPHGSEVFIGGLPKDASEEDLRDLCEPIG 128
E+ ED+++ E E E D A P + EED D E
Sbjct: 173 EEEEEDDEEEDEEDDESEDEAMDTTPAPVKKPTPAKATPAKAKAESEDEEDEED--EDED 230
Query: 129 EVFEVGLVKDKDSGESKGFAFVA--FRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRL 186
E E +D++ E + A R KE+A ++ E +K K +T + S L
Sbjct: 231 EEDEDDEEEDEEESEDEKPVKEAPGKRKKEMANKSAPE--AKKKKTETPASAFS-----L 283
Query: 187 FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ- 245
F+ N+ + +E R I++ G ++ + + + S R F +V + + D + Q
Sbjct: 284 FVKNLTPTKDYEELRTAIKEFF-GKKNLQ-VSEVRIGSSKR-FGYVDFLSAEDMDKALQL 340
Query: 246 ---KMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQ 302
K+ KL+ S E K D + L+VKNLP T ++K +F+
Sbjct: 341 NGKKLMGLEIKLEKAKSKESLKENKKERD--------ARTLFVKNLPYRVTEDEMKNVFE 392
Query: 303 RHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEV 352
EV V+ G S + +I + + A KA+++ + E+DG+ + +
Sbjct: 393 NALEVRLVLNKEGSS--KGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVI 440
Score = 123 (48.4 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 56/234 (23%), Positives = 98/234 (41%)
Query: 50 EYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIG 109
E+ E E G+ ++ V D T S+ E +K + +
Sbjct: 414 EFKTEAEAEKALEEKQGTEVDGRAMVIDY---TGEKSQQESQKGGG----ERESKTLIVN 466
Query: 110 GLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKD 169
L ASEE L++L + + + + G KG+AFV F + E AK A++ + +
Sbjct: 467 NLSYAASEETLQELFKKATSI----KMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTE 522
Query: 170 FKGKTIRCSMSET-------NNR---------LFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
+G+ IR S N R LF+ + + TE+ R+ E G +
Sbjct: 523 IEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE----GSIS 578
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK 267
++ D S ++GF FV + + A +++ M ++DGN T+ +A+PK
Sbjct: 579 ARIVTDRDTGS-SKGFGFVDFSSPEDAKAAKEAMEDG--EIDGNKVTLDFAKPK 629
Score = 57 (25.1 bits), Expect = 5.5e-16, Sum P(2) = 5.5e-16
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 38 RDGNVKQNDEDEEYDAETSK-EDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQ 95
++ ++ ++DEE D E + ED++ + + + + + SEDE+++ D+
Sbjct: 169 QESEEEEEEDDEEEDEEDDESEDEAMDTTPAPVKKPTPAKATPAKAKAESEDEEDEEDE 227
Score = 55 (24.4 bits), Expect = 8.8e-16, Sum P(2) = 8.8e-16
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 44 QNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASI-----SEDEKEKHDQ 95
++DE++E + E S E++ P + A K+ A + SE+E+E+ D+
Sbjct: 124 EDDEEDEDEEEESDEEEEPAVPVKPAAKKSAAAVPAKKPAVVPAKQESEEEEEEDDE 180
Score = 54 (24.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 63 GA-NGSHINTEDAVE-DEDKRTASISEDEKEKHDQ 95
GA NG + E++ E DED EDE+E+ D+
Sbjct: 104 GAKNGKNAKKEESEEEDEDDEDDEEDEDEEEESDE 138
Score = 42 (19.8 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 53 AETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDE 89
A+ K + + + ED EDED+ S E+E
Sbjct: 105 AKNGKNAKKEESEEEDEDDEDDEEDEDEEEESDEEEE 141
Score = 41 (19.5 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 43 KQNDEDEEYDAETSKEDQ 60
K+ E+E+ D E +ED+
Sbjct: 113 KEESEEEDEDDEDDEEDE 130
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 227 (85.0 bits), Expect = 5.8e-16, P = 5.8e-16
Identities = 69/266 (25%), Positives = 119/266 (44%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRLF---IGNVPKSWTEKEF-RKVIEDVGPGVDTIELIKD 219
+ KGK IR S+ + L +GNV +K K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
+ ++G+AFV + A+ + +KM D + K A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAANKAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGAKAKE 189
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIK 338
+Y+KN E + L+ELF + G+ V SGK + FGF+ Y + A KA++
Sbjct: 190 FTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVE 249
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ E+ G+ + V A+ + ++ E
Sbjct: 250 EMNGKEMSGKSIFVGRAQKKVERQAE 275
Score = 137 (53.3 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 29/89 (32%), Positives = 52/89 (58%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E+LR+L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
F FV++ E A +A++E+ K+ GK+I
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKSI 261
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 229 (85.7 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
Identities = 66/270 (24%), Positives = 122/270 (45%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + +FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D ++G+ FV + A+ + +KM D + K A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGA 185
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
A + +Y+KN E+ ++LKELF + G V +SGK + FGF+ + A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + E++G+ + V A+ + ++TE
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 140 (54.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 40/129 (31%), Positives = 63/129 (48%)
Query: 58 EDQSPGANGSHINTEDAVEDE-DKRTASISEDEK----------EKHDQLLALPPHGSEV 106
E+ S G H T++A E +K + D K E+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L++L G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
Score = 38 (18.4 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 407 QQPMIYGRGQMPAGMHMVPMVLP 429
QQP ++ +GQ P M+ P
Sbjct: 533 QQPAVHVQGQEPLTASMLASAPP 555
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 229 (85.7 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
Identities = 66/270 (24%), Positives = 122/270 (45%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + +FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D ++G+ FV + A+ + +KM D + K A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGA 185
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
A + +Y+KN E+ ++LKELF + G V +SGK + FGF+ + A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + E++G+ + V A+ + ++TE
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 140 (54.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 40/129 (31%), Positives = 63/129 (48%)
Query: 58 EDQSPGANGSHINTEDAVEDE-DKRTASISEDEK----------EKHDQLLALPPHGSEV 106
E+ S G H T++A E +K + D K E+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L++L G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
Score = 38 (18.4 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 407 QQPMIYGRGQMPAGMHMVPMVLP 429
QQP ++ +GQ P M+ P
Sbjct: 533 QQPAVHVQGQEPLTASMLASAPP 555
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 226 (84.6 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 65/270 (24%), Positives = 122/270 (45%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + +FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D ++G+ FV + A+ + +KM D + K A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGA 185
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ + A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + E++G+ + V A+ + ++TE
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 144 (55.7 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 41/129 (31%), Positives = 63/129 (48%)
Query: 58 EDQSPGANGSHINTEDAVEDE-DKRTASISEDEK----------EKHDQLLALPPHGSEV 106
E+ S G H T++A E +K + D K E+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
Score = 41 (19.5 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 23/101 (22%), Positives = 38/101 (37%)
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVY--SCAAGVHPSGLPHAGYGSFAG 388
SS + + T++ E+ G E+ + T+ +T G + AA P+ Y AG
Sbjct: 470 SSQVPRVMSTQRVEV-GLQFEIT-SSANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAG 527
Query: 389 TAYXXXXXXXXXXXXXXXQQPMIYGRGQMPAGMHMVPMVLP 429
QQP ++ +GQ P M+ P
Sbjct: 528 VR--NPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPP 566
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 225 (84.3 bits), Expect = 9.0e-16, P = 9.0e-16
Identities = 64/271 (23%), Positives = 125/271 (46%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S +A+V F+ + A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + +F+ N+ KS K + G + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG-NILSCN 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVS-WAEPKSTPDHSA 274
++ D ++G+ FV + + A+ + +KM L+G V + K
Sbjct: 130 VVCDENG---SKGYGFVHFETHEAAERAIKKMNG--MLLNGRKVFVGQFKSRKEREAELG 184
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSA 333
A A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ + A
Sbjct: 185 ARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 334 LKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + E++G+ + V A+ + ++TE
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 139 (54.0 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 32/89 (35%), Positives = 49/89 (55%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A V+I +D +E L+DL G V ++ D +SG+SKG
Sbjct: 174 KSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
F FV+F E A++A+DE+ K+ GK I
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQI 261
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 177 (67.4 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 43/141 (30%), Positives = 82/141 (58%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++FIG +P++ E+DL+ + E G+++E+ ++KDK +G KG AF+ + ++E A +A +
Sbjct: 8 KLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNA 67
Query: 165 LCS-KDFKG--KTIRCSMSETNNR----LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L K G + I+ +++ R LF+G + K ++ + RK+ E G ++ ++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSEGRGDRKLFVGMLGKQLSDADVRKMFEPFG-SIEECTVL 126
Query: 218 KDPQAPSRNRGFAFVLYYNNA 238
+ P S+ G AFV Y +NA
Sbjct: 127 RGPDGASK--GCAFVKYQSNA 145
Score = 106 (42.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+G L K S+ D+R + EP G + E +++ D G SKG AFV ++S A+ AI
Sbjct: 95 KLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPD-GASKGCAFVKYQSNAEAQAAISA 153
Query: 165 L 165
L
Sbjct: 154 L 154
Score = 90 (36.7 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 25/106 (23%), Positives = 49/106 (46%)
Query: 259 PTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEV--TKVVTPPGK 316
PT+ +P+ + +++ +LP+ T ++ ++F G V KV
Sbjct: 345 PTLVAQQPQQPQQLQQREGPEGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRAT 404
Query: 317 SGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR 362
+ + FGF+ + +SA AI+ ++I + L+V L RP+ R
Sbjct: 405 NQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 450
Score = 60 (26.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
+FI ++P+ +T+ E ++ G V + ++ D +A ++++ F FV + N A A + Q
Sbjct: 369 IFIYHLPQEFTDSEMLQMFLPFG-NVISAKVFVD-RATNQSKCFGFVSFDNPASAQAAIQ 426
Query: 246 KMTSANFKLDGNTPTVSWAEPK 267
M F++ V PK
Sbjct: 427 AMNG--FQIGMKRLKVQLKRPK 446
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 212 (79.7 bits), Expect = 9.6e-16, Sum P(2) = 9.6e-16
Identities = 86/348 (24%), Positives = 164/348 (47%)
Query: 59 DQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEE 118
D++ NG + + ++ K S+ E++KE+ + L F+ LP +E+
Sbjct: 335 DKALQLNGKKLMGLEIKLEKAKSKESLKENKKERDARTL---------FVKNLPYRVTED 385
Query: 119 DLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178
+++++ E EV LV +K+ G SKG A++ F+++ A++A++E + G+ +
Sbjct: 386 EMKNVFE---NALEVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVID 441
Query: 179 MSETNNRLFIGNVPKSWTEKEFRKVIED---VGPGVDTI-EL------IKDPQA-PSRNR 227
+ ++ K E+E + +I + +T+ EL IK PQ R +
Sbjct: 442 YTGEKSQQ---ESQKGGGERESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPK 498
Query: 228 GFAFVLYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAEP---KSTPDHSAAAASQVKAL 283
G+AFV + A+ +++ + S N +++G + ++ P K + Q K L
Sbjct: 499 GYAFVEF---PTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTL 555
Query: 284 YVKNLPENTTTKQLKELFQRHGEVT-KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT-E 341
+V+ L E+TT + L+E F+ G ++ ++VT + FGF+ ++ A KA K+ E
Sbjct: 556 FVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDA-KAAKEAME 612
Query: 342 KYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPS-GLPHAGYGSFAG 388
EIDG + + A+P+ + G + G G G G F G
Sbjct: 613 DGEIDGNKVTLDFAKPKGEFQRGGGFGGGFGGRGGRGGRGGGRGGFGG 660
Score = 191 (72.3 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 77/335 (22%), Positives = 141/335 (42%)
Query: 43 KQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPH 102
+ DEDEE D + +ED+ + + ++ S E +K+K + P
Sbjct: 225 EDEDEDEE-DEDDEEEDEEESEDEKPVKEAPGKRKKEMANKSAPEAKKKKTET----PAS 279
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVF-EVGL-VKDKDSGESKGFAFVAFRSKEVAKR 160
+F+ L E+LR I E F + L V + G SK F +V F S E +
Sbjct: 280 AFSLFVKNLTPTKDYEELRTA---IKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDK 336
Query: 161 AIDELCSKDFKGKTIRC-------SMSETNNR-----LFIGNVPKSWTEKEFRKVIEDVG 208
A+ +L K G I+ S+ E LF+ N+P TE E + V E+
Sbjct: 337 AL-QLNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFENA- 394
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
++ + L+ + + S+ G A++ + A A+ + ++ ++DG + + KS
Sbjct: 395 --LE-VRLVLNKEGSSK--GMAYIEFKTEAEAEKALEEKQGT--EVDGRAMVIDYTGEKS 447
Query: 269 TPDHSAAAAS-QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIH 326
+ + K L V NL + + L+ELF++ T + P G+ + + F+
Sbjct: 448 QQESQKGGGERESKTLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVE 504
Query: 327 YAERSSALKAIKDTEKYEIDGQVLEVALARPQTNK 361
+ A +A+ EI+G+ + + + P K
Sbjct: 505 FPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQK 539
Score = 126 (49.4 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 69/290 (23%), Positives = 120/290 (41%)
Query: 72 EDAVEDEDKRTASISEDEKEKHDQLLA---LPPHGSEVFIGGLPKDASEEDLRDLCEPIG 128
E+ ED+++ E E E D A P + EED D E
Sbjct: 173 EEEEEDDEEEDEEDDESEDEAMDTTPAPVKKPTPAKATPAKAKAESEDEEDEED--EDED 230
Query: 129 EVFEVGLVKDKDSGESKGFAFVA--FRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRL 186
E E +D++ E + A R KE+A ++ E +K K +T + S L
Sbjct: 231 EEDEDDEEEDEEESEDEKPVKEAPGKRKKEMANKSAPE--AKKKKTETPASAFS-----L 283
Query: 187 FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ- 245
F+ N+ + +E R I++ G ++ + + + S R F +V + + D + Q
Sbjct: 284 FVKNLTPTKDYEELRTAIKEFF-GKKNLQ-VSEVRIGSSKR-FGYVDFLSAEDMDKALQL 340
Query: 246 ---KMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQ 302
K+ KL+ S E K D + L+VKNLP T ++K +F+
Sbjct: 341 NGKKLMGLEIKLEKAKSKESLKENKKERD--------ARTLFVKNLPYRVTEDEMKNVFE 392
Query: 303 RHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEV 352
EV V+ G S + +I + + A KA+++ + E+DG+ + +
Sbjct: 393 NALEVRLVLNKEGSS--KGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVI 440
Score = 123 (48.4 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 56/234 (23%), Positives = 98/234 (41%)
Query: 50 EYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIG 109
E+ E E G+ ++ V D T S+ E +K + +
Sbjct: 414 EFKTEAEAEKALEEKQGTEVDGRAMVIDY---TGEKSQQESQKGGG----ERESKTLIVN 466
Query: 110 GLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKD 169
L ASEE L++L + + + + G KG+AFV F + E AK A++ + +
Sbjct: 467 NLSYAASEETLQELFKKATSI----KMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTE 522
Query: 170 FKGKTIRCSMSET-------NNR---------LFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
+G+ IR S N R LF+ + + TE+ R+ E G +
Sbjct: 523 IEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE----GSIS 578
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK 267
++ D S ++GF FV + + A +++ M ++DGN T+ +A+PK
Sbjct: 579 ARIVTDRDTGS-SKGFGFVDFSSPEDAKAAKEAMEDG--EIDGNKVTLDFAKPK 629
Score = 57 (25.1 bits), Expect = 9.6e-16, Sum P(2) = 9.6e-16
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 38 RDGNVKQNDEDEEYDAETSK-EDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQ 95
++ ++ ++DEE D E + ED++ + + + + + SEDE+++ D+
Sbjct: 169 QESEEEEEEDDEEEDEEDDESEDEAMDTTPAPVKKPTPAKATPAKAKAESEDEEDEEDE 227
Score = 55 (24.4 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 44 QNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASI-----SEDEKEKHDQ 95
++DE++E + E S E++ P + A K+ A + SE+E+E+ D+
Sbjct: 124 EDDEEDEDEEEESDEEEEPAVPVKPAAKKSAAAVPAKKPAVVPAKQESEEEEEEDDE 180
Score = 54 (24.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 63 GA-NGSHINTEDAVE-DEDKRTASISEDEKEKHDQ 95
GA NG + E++ E DED EDE+E+ D+
Sbjct: 104 GAKNGKNAKKEESEEEDEDDEDDEEDEDEEEESDE 138
Score = 42 (19.8 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 53 AETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDE 89
A+ K + + + ED EDED+ S E+E
Sbjct: 105 AKNGKNAKKEESEEEDEDDEDDEEDEDEEEESDEEEE 141
Score = 41 (19.5 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 43 KQNDEDEEYDAETSKEDQ 60
K+ E+E+ D E +ED+
Sbjct: 113 KEESEEEDEDDEDDEEDE 130
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 226 (84.6 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 65/270 (24%), Positives = 122/270 (45%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + +FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D ++G+ FV + A+ + +KM D + K A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGA 185
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ + A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + E++G+ + V A+ + ++TE
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 144 (55.7 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 41/129 (31%), Positives = 63/129 (48%)
Query: 58 EDQSPGANGSHINTEDAVEDE-DKRTASISEDEK----------EKHDQLLALPPHGSEV 106
E+ S G H T++A E +K + D K E+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
Score = 38 (18.4 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 407 QQPMIYGRGQMPAGMHMVPMVLP 429
QQP ++ +GQ P M+ P
Sbjct: 493 QQPAVHVQGQEPLTASMLASAPP 515
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 201 (75.8 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 73/293 (24%), Positives = 142/293 (48%)
Query: 111 LPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF 170
LP ++++L+++ E + E+ LV KD G+SKG A++ F+++ A++ ++E +
Sbjct: 410 LPYKVTQDELKEVFE---DAVEIRLVS-KD-GKSKGIAYIEFKTEADAEKTLEEKQGTEI 464
Query: 171 KGKTIRCSMS--ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV--DTIEL-------IKD 219
G++I + + ++ G +W+ + V+ ++ +T++ IK
Sbjct: 465 DGRSISLYYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATHIKV 524
Query: 220 PQAPS-RNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPKSTPDHSAAAA 277
PQ + +++G+AF+ + A + +++ + S N + ++G + P+ +P+ A +
Sbjct: 525 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN---ARS 578
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEV-TKVVTPPGKSGKRDFGFIHYAERSSALKA 336
K L+VK L E+TT + LKE F G + ++VT + FGF+ + A KA
Sbjct: 579 QPSKTLFVKGLSEDTTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNSEEDA-KA 635
Query: 337 IKDT-EKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAG 388
K+ E EIDG + + A+P+ G G G G G F G
Sbjct: 636 AKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGG 688
Score = 151 (58.2 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 44/170 (25%), Positives = 84/170 (49%)
Query: 108 IGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCS 167
+ L A+EE L+++ E + V +G+SKG+AF+ F S E AK A++
Sbjct: 500 LSNLSYSATEETLQEVFEKATHI----KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNK 555
Query: 168 KDFKGKTIRCSM----------SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
++ +G+ IR + S+ + LF+ + + TE+ ++ + G ++
Sbjct: 556 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD----GSIRARIV 611
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK 267
D + S ++GF FV + + A +++ M ++DGN T+ WA+PK
Sbjct: 612 TDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 658
Score = 138 (53.6 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 73/336 (21%), Positives = 142/336 (42%)
Query: 39 DGNVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQ--- 95
D + +++D+DEE D ++ + + ED +D+D EDE+++ D+
Sbjct: 151 DDSEEEDDDDEEEDEPAVRKAAAAFGAAPATDDEDDEDDDDDDDEEEEEDEEDEEDEDDS 210
Query: 96 ----LLALPPHGSEVFIGGLP-------KDASEEDLRDLCEPIGEVFEVGLVKDKDSGES 144
+ +P G + + +P +D EED D + E E +D D E
Sbjct: 211 EEEPMEIVPAKGKKAPVKAVPVKAKSTAEDEDEEDDDD-DDDEEEEEEDDDDEDDDDEEE 269
Query: 145 KGFAFVAFRSKEVAKRA--------IDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWT 196
+ +E K A + + + K + + + T+ LF+GN+ + +
Sbjct: 270 EEEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTSFNLFVGNLNFNKS 329
Query: 197 EKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG 256
E + I D+ D + D + +R F +V + + A+ + + K+ G
Sbjct: 330 APELKTGISDLFAKNDLA--VVDVRI-GVSRKFGYVDFES---AEDLEKALELTGLKVFG 383
Query: 257 NTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGK 316
N + +PK A + L KNLP T +LKE+F+ E+ ++V+ GK
Sbjct: 384 NE--IKLEKPKGKDSKKDRDA---RTLLAKNLPYKVTQDELKEVFEDAVEI-RLVSKDGK 437
Query: 317 SGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEV 352
S + +I + + A K +++ + EIDG+ + +
Sbjct: 438 S--KGIAYIEFKTEADAEKTLEEKQGTEIDGRSISL 471
Score = 106 (42.4 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+F+ GL +D +EE L++ + G + +V D+++G SKGF FV F S+E AK A + +
Sbjct: 584 LFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 640
Query: 166 CSKDFKGKTI 175
+ G +
Sbjct: 641 EDGEIDGNKV 650
Score = 69 (29.3 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 39 DGNVKQNDEDEEYDAETSKEDQSPGAN--GSHINTEDAVEDEDKRTASISEDEKEKHDQ 95
D + + D+ EE D + +ED+ P + A +DED +DE+E+ D+
Sbjct: 144 DSDEEDEDDSEEEDDDDEEEDE-PAVRKAAAAFGAAPATDDEDDEDDDDDDDEEEEEDE 201
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 226 (84.6 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 65/270 (24%), Positives = 122/270 (45%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + +FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D ++G+ FV + A+ + +KM D + K A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGA 185
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ + A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + E++G+ + V A+ + ++TE
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 144 (55.7 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 41/129 (31%), Positives = 63/129 (48%)
Query: 58 EDQSPGANGSHINTEDAVEDE-DKRTASISEDEK----------EKHDQLLALPPHGSEV 106
E+ S G H T++A E +K + D K E+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
Score = 38 (18.4 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 407 QQPMIYGRGQMPAGMHMVPMVLP 429
QQP ++ +GQ P M+ P
Sbjct: 533 QQPAVHVQGQEPLTASMLASAPP 555
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 226 (84.6 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 65/270 (24%), Positives = 122/270 (45%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + +FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D ++G+ FV + A+ + +KM D + K A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGA 185
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ + A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + E++G+ + V A+ + ++TE
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 144 (55.7 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 41/129 (31%), Positives = 63/129 (48%)
Query: 58 EDQSPGANGSHINTEDAVEDE-DKRTASISEDEK----------EKHDQLLALPPHGSEV 106
E+ S G H T++A E +K + D K E+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
Score = 38 (18.4 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 407 QQPMIYGRGQMPAGMHMVPMVLP 429
QQP ++ +GQ P M+ P
Sbjct: 533 QQPAVHVQGQEPLTASMLASAPP 555
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 226 (84.6 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 65/270 (24%), Positives = 122/270 (45%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + +FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D ++G+ FV + A+ + +KM D + K A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGA 185
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ + A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + E++G+ + V A+ + ++TE
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 144 (55.7 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 41/129 (31%), Positives = 63/129 (48%)
Query: 58 EDQSPGANGSHINTEDAVEDE-DKRTASISEDEK----------EKHDQLLALPPHGSEV 106
E+ S G H T++A E +K + D K E+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
Score = 38 (18.4 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 407 QQPMIYGRGQMPAGMHMVPMVLP 429
QQP ++ +GQ P M+ P
Sbjct: 533 QQPAVHVQGQEPLTASMLASAPP 555
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 226 (84.6 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 65/270 (24%), Positives = 122/270 (45%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + +FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D ++G+ FV + A+ + +KM D + K A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGA 185
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ + A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + E++G+ + V A+ + ++TE
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 144 (55.7 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 41/129 (31%), Positives = 63/129 (48%)
Query: 58 EDQSPGANGSHINTEDAVEDE-DKRTASISEDEK----------EKHDQLLALPPHGSEV 106
E+ S G H T++A E +K + D K E+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
Score = 38 (18.4 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 407 QQPMIYGRGQMPAGMHMVPMVLP 429
QQP ++ +GQ P M+ P
Sbjct: 533 QQPAVHVQGQEPLTASMLASAPP 555
>UNIPROTKB|F1NZU2 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GeneTree:ENSGT00550000074366
GO:GO:0003676 EMBL:AADN02002396 IPI:IPI00570859
Ensembl:ENSGALT00000025521 ArrayExpress:F1NZU2 Uniprot:F1NZU2
Length = 447
Score = 139 (54.0 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 31/96 (32%), Positives = 55/96 (57%)
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYA 328
T + + A VK L+V+NL T + L++ F + G++ +V K K D+ FIH+
Sbjct: 211 TKEAAQEAVKLVKVLFVRNLANTVTEEILEKAFSQFGKLERV-----KKLK-DYAFIHFD 264
Query: 329 ERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
ER A+KA+++ +++G+ +E+ A+P KR E
Sbjct: 265 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKE 300
Score = 130 (50.8 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 24/63 (38%), Positives = 43/63 (68%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 157 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 216
Query: 160 RAI 162
A+
Sbjct: 217 EAV 219
Score = 41 (19.5 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 21/96 (21%), Positives = 40/96 (41%)
Query: 123 LCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSET 182
+ E + E++ GLV D E A F ++E A + + D +S
Sbjct: 38 VAEKLDEIYVAGLVAHSDLDERAIEALKEF-NEEGALAVLQQFKDSD---------LSHV 87
Query: 183 NNR-LFIGNVPKSWTEKEFRKV-IEDVGPGVDTIEL 216
N+ F+ V K++ ++E + + D G D ++
Sbjct: 88 QNKSAFLCGVMKTYRQREKQGTKVADSSKGPDEAKI 123
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 224 (83.9 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 61/270 (22%), Positives = 124/270 (45%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L +D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KG+ +R S+ + +FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D ++G+ FV + A+ + +KM D + K A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGA 185
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
A + +Y+KN E+ +LK++F ++G + ++GK R FGF+ + A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQ 245
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A+ + E++G+++ V A+ + ++TE
Sbjct: 246 RAVDEMNGKEMNGKLIYVGRAQKKVERQTE 275
Score = 138 (53.6 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 37/129 (28%), Positives = 63/129 (48%)
Query: 58 EDQSPGANGSHINTEDAVEDE-DKRTASISEDEK----------EKHDQLLALPPHGSEV 106
E+ S G H T++A E +K + D K E+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D ++ L+D+ G + ++ D ++G+S+GF FV+F E A+RA+DE+
Sbjct: 194 YIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQRAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKEMNGKLI 261
Score = 38 (18.4 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 407 QQPMIYGRGQMPAGMHMVPMVLP 429
QQP ++ +GQ P M+ P
Sbjct: 531 QQPAVHVQGQEPLTASMLAAAPP 553
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 215 (80.7 bits), Expect = 2.7e-15, P = 2.7e-15
Identities = 75/293 (25%), Positives = 142/293 (48%)
Query: 111 LPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF 170
LP ++++L+++ E + E+ LV KD G+SKG A++ F+++ A++ ++E +
Sbjct: 54 LPYKVTQDELKEVFE---DAVEIRLVS-KD-GKSKGIAYIEFKTEADAEKTLEEKQGTEI 108
Query: 171 KGKTIRCSMS--ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV--DTIE-------LIKD 219
G++I + + N+ F G +W+ + V+ ++ +T++ IK
Sbjct: 109 DGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEKATFIKV 168
Query: 220 PQAPS-RNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPKSTPDHSAAAA 277
PQ + +++G+AF+ + A + +++ + S N + ++G + P+ +P+ A +
Sbjct: 169 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN---ARS 222
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEV-TKVVTPPGKSGKRDFGFIHYAERSSALKA 336
K L+VK L E TT + LKE F G + ++VT + FGF+ + A KA
Sbjct: 223 QPSKTLFVKGLSEETTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNSEEDA-KA 279
Query: 337 IKDT-EKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAG 388
K+ E EIDG + + A+P+ G G G G G F G
Sbjct: 280 AKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGG 332
Score = 142 (55.0 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 58/235 (24%), Positives = 112/235 (47%)
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRC-------SMSETNNRLFIG-NVPKSWTEK 198
F +V F S E ++A++ K F G I+ S + + R + N+P T+
Sbjct: 3 FGYVDFESAEDLEKALELTGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQD 61
Query: 199 EFRKVIEDVGPGVDTIELI-KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGN 257
E ++V ED V+ I L+ KD +++G A++ + A A+ + ++ ++DG
Sbjct: 62 ELKEVFEDA---VE-IRLVSKD----GKSKGIAYIEFKTEADAEKTLEEKQGT--EIDGR 111
Query: 258 TPTVSWAEPKS-TPDHSAAAAS----QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT 312
+ ++ + K D S + K L + NL + T + L+E+F++ T +
Sbjct: 112 SISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEK---ATFIKV 168
Query: 313 PPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ--TNKRTE 364
P ++GK + + FI +A A +A+ K EI+G+ + + L P+ N R++
Sbjct: 169 PQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQ 223
>MGI|MGI:1926034 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1926034 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
CTD:11189 OMA:HSAYLNP GO:GO:0000381 OrthoDB:EOG4RJG30 EMBL:AY165052
EMBL:BC057553 IPI:IPI00461847 IPI:IPI00854025 RefSeq:NP_766022.1
UniGene:Mm.44292 ProteinModelPortal:Q8CIN6 SMR:Q8CIN6 STRING:Q8CIN6
PhosphoSite:Q8CIN6 PaxDb:Q8CIN6 PRIDE:Q8CIN6
Ensembl:ENSMUST00000029784 GeneID:78784 KEGG:mmu:78784
UCSC:uc008qgl.1 UCSC:uc008qgm.1 InParanoid:Q8CIN6 NextBio:349492
Bgee:Q8CIN6 CleanEx:MM_TNRC4 Genevestigator:Q8CIN6 Uniprot:Q8CIN6
Length = 465
Score = 175 (66.7 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 43/145 (29%), Positives = 81/145 (55%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
P ++F+G +P+ E+DL+ + E G +FE+ ++KDK +G KG AF+ + +++ A +
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
Query: 161 AIDELCS-KDFKG--KTIRCSMSETNNR----LFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
A L K G + I+ +++ +R LF+G + K T+++ RK+ E G +D
Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDE 122
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNA 238
+++ P S+ G AFV + +A
Sbjct: 123 CTVLRGPDGTSK--GCAFVKFQTHA 145
Score = 109 (43.4 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+G L K ++ED+R + EP G + E +++ D G SKG AFV F++ A+ AI+
Sbjct: 95 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 153
Query: 165 LCS 167
L S
Sbjct: 154 LHS 156
Score = 88 (36.0 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
+++ +LP+ T ++ ++F G V KV + + FGF+ + +SA AI+
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
++I + L+V L RP+ R
Sbjct: 442 NGFQIGMKRLKVQLKRPKDANR 463
Score = 59 (25.8 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
+FI ++P+ +T+ E ++ G V + ++ D +A ++++ F FV + N A A + Q
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGH-VISAKVFVD-RATNQSKCFGFVSFDNPASAQAAIQ 439
Query: 246 KMTSANFKLDGNTPTVSWAEPK 267
M F++ V PK
Sbjct: 440 AMNG--FQIGMKRLKVQLKRPK 459
>DICTYBASE|DDB_G0279539 [details] [associations]
symbol:DDB_G0279539 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0279539 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000031 eggNOG:COG1404
RefSeq:XP_001732991.1 ProteinModelPortal:B0G128
EnsemblProtists:DDB0234241 GeneID:8622096 KEGG:ddi:DDB_G0279539
OMA:MSKDEND Uniprot:B0G128
Length = 373
Score = 215 (80.7 bits), Expect = 3.0e-15, P = 3.0e-15
Identities = 79/295 (26%), Positives = 140/295 (47%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VF+ + + ++E L++ IG+V E +VK+K SGE+KG+ FV F A+ AI+
Sbjct: 12 VFVSDIARGVTDEQLKEEFSKIGDVLEAVVVKNKHSGETKGYGFVKFYHMADAQHAIETP 71
Query: 166 CSKDFK----GKT--IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKD 219
FK GK ++ +++++ N L+IG++PK TEKE R +E++G + T++ +
Sbjct: 72 NPPLFKDGITGKPQMVKVTLADSKNTLYIGHIPKGLTEKEVRAELEEIG--MCTLKSFEF 129
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPKSTPDHSAAAAS 278
PS+ G+A + + T K + + T S K + D + +
Sbjct: 130 -DGPSKLYGYA----------QFKDHETTIKAIKSIQKSKYTASLTPSKRSNDDGKSPTT 178
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGE-VTKVVTPPGKSGKRDFG--FIHYAERSSALK 335
+V L+V+ + + L++ Q E + K+V P K G FI Y +S K
Sbjct: 179 KV--LFVRGIRSQDEGELLRK--QLGPELIEKIVVPLDSQKKTPLGHAFI-YCNSTSDAK 233
Query: 336 AIKD-TEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGT 389
I D ++ GQ L ++ P+ K +G + AA + P+ + F G+
Sbjct: 234 IIMDHNHDFDFMGQKLTISWGLPKQRKMMDGYF--AANTPLAAPPYDYHYYFPGS 286
>UNIPROTKB|Q5SZQ7 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
Length = 415
Score = 173 (66.0 bits), Expect = 3.0e-15, Sum P(2) = 3.0e-15
Identities = 43/146 (29%), Positives = 81/146 (55%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
P ++F+G +P+ E+DL+ + E G +FE+ ++KDK +G KG AF+ + +++ A +
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
Query: 161 AIDELCS-KDFKG--KTIRCSMSETNNR-----LFIGNVPKSWTEKEFRKVIEDVGPGVD 212
A L K G + I+ +++ +R LF+G + K T+++ RK+ E G +D
Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-ID 122
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNA 238
+++ P S+ G AFV + +A
Sbjct: 123 ECTVLRGPDGTSK--GCAFVKFQTHA 146
Score = 109 (43.4 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+G L K ++ED+R + EP G + E +++ D G SKG AFV F++ A+ AI+
Sbjct: 96 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 154
Query: 165 LCS 167
L S
Sbjct: 155 LHS 157
Score = 88 (36.0 bits), Expect = 3.0e-15, Sum P(2) = 3.0e-15
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
+++ +LP+ T ++ ++F G V KV + + FGF+ + +SA AI+
Sbjct: 332 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 391
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
++I + L+V L RP+ R
Sbjct: 392 NGFQIGMKRLKVQLKRPKDANR 413
Score = 59 (25.8 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
+FI ++P+ +T+ E ++ G V + ++ D +A ++++ F FV + N A A + Q
Sbjct: 332 IFIYHLPQEFTDSEILQMFVPFGH-VISAKVFVD-RATNQSKCFGFVSFDNPASAQAAIQ 389
Query: 246 KMTSANFKLDGNTPTVSWAEPK 267
M F++ V PK
Sbjct: 390 AMNG--FQIGMKRLKVQLKRPK 409
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 220 (82.5 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 76/326 (23%), Positives = 152/326 (46%)
Query: 53 AETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEK-EKHDQLLALPPHGSEVFIGGL 111
AET++ +S +N E++ A+ + D+ E+ + + + + +++G L
Sbjct: 4 AETNQLQESM----EKLNIGSTTEEQSAAAATTTADQSAEEQGESSGVAENSASLYVGEL 59
Query: 112 PKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFK 171
+E L ++ PIG+V + + +D S +S G+A+V + E ++AI+EL +
Sbjct: 60 NPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIE 119
Query: 172 GKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
G+ R S+ + +FI N+ + K G + + ++ D
Sbjct: 120 GRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGK-ILSCKVATDEFGQ 178
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKA- 282
S+ GF ++Y A A + + + N L N V + S D + ++KA
Sbjct: 179 SKCFGF---VHYETAEA--AEAAIENVNGMLL-NDREVFVGKHISKKDRESKF-EEMKAN 231
Query: 283 ---LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIK 338
+YVKN+ N + + ++LF G++T + + GK + FGF+++ + SA+KA++
Sbjct: 232 FTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVE 291
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+GQ + V A+ + + E
Sbjct: 292 ELNDKEINGQKIYVGRAQKKRERLEE 317
Score = 148 (57.2 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 54/212 (25%), Positives = 102/212 (48%)
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPS 224
+ KD + K + TN +++ N+ +++E+ F K+ G + +I L KD S
Sbjct: 216 ISKKDRESKFEEMKANFTN--IYVKNIDLNYSEESFEKLFSPFGK-ITSIYLEKDQDGKS 272
Query: 225 RNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST------PDHSAA--- 275
+ GF FV + ++ A + +++ +++G V A+ K + A
Sbjct: 273 K--GFGFVNFEDHESAVKAVEELNDK--EINGQKIYVGRAQKKRERLEELKKQYEAVRLE 328
Query: 276 --AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSS 332
A Q L+VKNL + +++L+E F+ G +T ++GK + FGF+ +
Sbjct: 329 KLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEE 388
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KAI + I+G+ L VALA+ + +R++
Sbjct: 389 ATKAITEMNTRMINGKPLYVALAQRKDVRRSQ 420
Score = 117 (46.2 bits), Expect = 0.00097, P = 0.00097
Identities = 34/137 (24%), Positives = 63/137 (45%)
Query: 45 NDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGS 104
N ED E + +E NG I A + ++ + E + ++L G
Sbjct: 279 NFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKY--QGV 336
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
+F+ L E L + +P G + ++ D ++G+SKGF FV F + E A +AI E
Sbjct: 337 NLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVD-EAGKSKGFGFVCFTTPEEATKAITE 395
Query: 165 LCSKDFKGKTIRCSMSE 181
+ ++ GK + ++++
Sbjct: 396 MNTRMINGKPLYVALAQ 412
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 212 (79.7 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 70/269 (26%), Positives = 125/269 (46%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRLF---IGNV-PKSWTEKEFRKVIEDVGPGVDTIELIKD 219
+ + KG+ IR S+ + L +GN+ K+ + K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA---AA 276
+RGF FV + + A +Q + + N L N V KS + A A
Sbjct: 131 ACDEHGSRGFGFVHFETHEAA---QQAINTMNGMLL-NDRKVFVGHFKSRREREAELGAR 186
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERSSALK 335
A + +YVKNLP + + L++LF + G++ V SG R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 336 AIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+ E+ G++L A+ + ++ E
Sbjct: 247 AVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Score = 122 (48.0 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 29/108 (26%), Positives = 57/108 (52%)
Query: 69 INTEDAVEDEDKRT-ASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPI 127
INT + + D++ + +E+ +L A + +++ LP D E+ L+DL
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQF 214
Query: 128 GEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
G++ V +++D +SG S+ F FV F E A++A+ + K+ G+ +
Sbjct: 215 GKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 51 (23.0 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT 308
LYVKNL ++ +L++ F +G +T
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVIT 321
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 156 (60.0 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 50/171 (29%), Positives = 83/171 (48%)
Query: 110 GLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE---LC 166
G+P D + L+D G++ + ++KD+ +G S+GF +V F S E AK A+ L
Sbjct: 9 GIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGEHFLG 68
Query: 167 SK--DFKGKTIRCSMSETNN---RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
++ + K T + M + R+F+ +P S +E +FR E G D + + KD
Sbjct: 69 NRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITD-LYMPKDYN 127
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++RG F+ + + AD S + + L G T V A PK DH
Sbjct: 128 S-KQHRGIGFITF---SSAD-SVEDLMEDTHDLGGTTVAVDRATPKED-DH 172
Score = 132 (51.5 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 53/241 (21%), Positives = 96/241 (39%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSR 244
+L + +P + + G D I ++KD ++ R+RGF +V + A A+ ++
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCI-VMKD-RSTGRSRGFGYVTF---ASAEDAK 58
Query: 245 QKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRH 304
+ +F L V A PK + A +V ++V +P + + + F+R+
Sbjct: 59 NALKGEHF-LGNRILEVKVATPK---EEMRQPAKKVTRIFVARIPSSVSESDFRSHFERY 114
Query: 305 GEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR 362
GE+T + P + K R GFI ++ S ++DT +++ G + V A P+ +
Sbjct: 115 GEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT--HDLGGTTVAVDRATPKEDDH 172
Query: 363 TEGVYSCAAGVHPS-------GLPHAGYGSFAGTAYXXXXXXXXXXXXXXXQQPMIYGRG 415
A P G P GYG++ YGRG
Sbjct: 173 PPRPPPVARMSRPPVAIAGGFGAP-GGYGAYDAYISAATRYAALGAPTLYDNPATFYGRG 231
Query: 416 Q 416
+
Sbjct: 232 E 232
Score = 114 (45.2 bits), Expect = 0.00098, P = 0.00098
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKD-KDSGESKGFAFVAFRSKEVAKRA 161
G+++F+G LP++AS +DLRD G + + + KD K SG +GF FV F VA R
Sbjct: 239 GNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGH-RGFGFVTFAENGVADRV 297
Query: 162 I---DELCSKD 169
E+C ++
Sbjct: 298 ARRSHEICGQE 308
Score = 105 (42.0 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 30/105 (28%), Positives = 47/105 (44%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKVVTP--PGKSGKRDFGFIHYAERSSALKAIKDT 340
++V LP+ + L++ F R G + P P +SG R FGF+ +AE A + +
Sbjct: 242 IFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVAR-- 299
Query: 341 EKYEIDGQVLEVALARPQTNKR-TEGVYSCAAGVHPSGLPHAGYG 384
+EI GQ + + A P + G S + P GYG
Sbjct: 300 RSHEICGQEVAIDSATPLDEAGPSAGASSMLSSSRPEYF--GGYG 342
Score = 96 (38.9 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 19/72 (26%), Positives = 38/72 (52%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +F+ +P SE D R E GE+ ++ + KD +S + +G F+ F S + + ++
Sbjct: 91 TRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME 150
Query: 164 ELCSKDFKGKTI 175
+ + D G T+
Sbjct: 151 D--THDLGGTTV 160
Score = 87 (35.7 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 26/99 (26%), Positives = 46/99 (46%)
Query: 184 NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYS 243
N++F+G +P+ + + R G D + KDP+ S +RGF FV + N AD
Sbjct: 240 NKIFVGRLPQEASVDDLRDYFGRFGHIQDAY-IPKDPKR-SGHRGFGFVTFAENGVAD-- 295
Query: 244 RQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKA 282
++ + ++ G + A P SA A+S + +
Sbjct: 296 --RVARRSHEICGQEVAIDSATPLDEAGPSAGASSMLSS 332
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 194 (73.4 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 75/340 (22%), Positives = 152/340 (44%)
Query: 65 NGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLC 124
NG + + D+ + + E++KE+ + L F+ LP +++DLR++
Sbjct: 350 NGKKLLGQPVKLDKARSKENSQENKKERDARTL---------FVKNLPYSITQDDLREIF 400
Query: 125 EPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNN 184
+ ++ V ++G S+G A++ F+++ +A++A++E D +G++I + +
Sbjct: 401 DQAVDI----RVPMGNTGTSRGIAYIEFKTEAIAEKALEEAQGSDVQGRSIIVDFTGDKS 456
Query: 185 R------------LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFV 232
R L + N+ S +E + V E V I+ PQ R +G+AFV
Sbjct: 457 RQGGRGAPSASKVLVVNNLAFSASEDSLQSVFEKA---VS----IRIPQNNGRPKGYAFV 509
Query: 233 LYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAE-PKSTPDHSAAAASQVKALYVKNLPE 290
+ N + S++ + + N ++G + + +++ + + K L+VK L +
Sbjct: 510 EFEN---VEDSKEALENCNNTDIEGRSIRLEYSQNDRERGGGGRGNSGPTKTLFVKGLSD 566
Query: 291 NTTTKQLKELFQRHGEVT-KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT-EKYEIDGQ 348
+TT + LK+ F G + ++ T + FGF+ + + KA K+ + EIDG
Sbjct: 567 DTTDQTLKDSFD--GAIAARIATDRDTGSSKGFGFVDF-DNEQDCKAAKEAMDDGEIDGN 623
Query: 349 VLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAG 388
+ + A+P+ G G G G+G G
Sbjct: 624 KVTLDYAKPKGEGGRGGFGGGRGGFGGRGGGRGGFGGRGG 663
Score = 127 (49.8 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 60/276 (21%), Positives = 116/276 (42%)
Query: 40 GNVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLAL 99
G VK +E EE D + ++D E+ KR A +++ +
Sbjct: 234 GMVKAKEESEEEDDDDEEDDDE--------EEEETPATPAKRKAETKKEKGTPPAKKAKT 285
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
G +F+G L + ++L+ E ++D G +K F +V F S+E +
Sbjct: 286 DGEGFSLFLGNLNNNKDFDELKSAISKFFSK-EGLEIQDVRLGGTKKFGYVDFASEEELQ 344
Query: 160 RAID----ELCSKDFKGKTIRCSMSETNNR-------LFIGNVPKSWTEKEFRKVIEDVG 208
+A++ +L + K R + N+ LF+ N+P S T+ + R++ +
Sbjct: 345 KALELNGKKLLGQPVKLDKARSKENSQENKKERDARTLFVKNLPYSITQDDLREIFDQA- 403
Query: 209 PGVDTIELIKDPQAPS-RNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK 267
VD I+ P + +RG A++ + A A+ + ++ ++ + G + V + K
Sbjct: 404 --VD----IRVPMGNTGTSRGIAYIEFKTEAIAEKALEEAQGSD--VQGRSIIVDFTGDK 455
Query: 268 STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQR 303
S A S K L V NL + + L+ +F++
Sbjct: 456 SRQG-GRGAPSASKVLVVNNLAFSASEDSLQSVFEK 490
Score = 72 (30.4 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 14/62 (22%), Positives = 31/62 (50%)
Query: 39 DGNVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLA 98
+ + +++D++EE D+E + D +P A E+ ++ ED+ E+ ++ A
Sbjct: 203 ESDEEEDDDEEEDDSEEEEMDTTPAPKAKKAGMVKAKEESEEEDDDDEEDDDEEEEETPA 262
Query: 99 LP 100
P
Sbjct: 263 TP 264
Score = 47 (21.6 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 43 KQNDEDEEYDAET--SKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHD 94
KQ EDE+ D E S+E+ P + + A + A S +E + D
Sbjct: 67 KQESEDEDDDDEDDESEEEAPPPKKAAKAPAKAAAPAKKAAPAEESSEEDDDDD 120
Score = 41 (19.5 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 11/56 (19%), Positives = 25/56 (44%)
Query: 43 KQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISE----DEKEKHD 94
+ ++ED++ D + E+++P + A K+ A + + +E E D
Sbjct: 111 ESSEEDDDDDDDDESEEEAPPPKKAPAKATPAKATPAKKAAPVKKAAPAEESEDDD 166
Score = 37 (18.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 45 NDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHD 94
+D+D+E + E ++P A + A + + A+ +E+ ++ D
Sbjct: 119 DDDDDESEEEAPPPKKAP-AKATPAKATPAKKAAPVKKAAPAEESEDDDD 167
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 197 (74.4 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 58/246 (23%), Positives = 111/246 (45%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S +A+V F+ + A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + +F+ N+ KS K + G + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG-NILSCN 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVS-WAEPKSTPDHSA 274
++ D ++G+ FV + + A+ + +KM L+G V + K
Sbjct: 130 VVCDENG---SKGYGFVHFETHEAAERAIKKMNG--MLLNGRKVFVGQFKSRKEREAELG 184
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSA 333
A A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ + A
Sbjct: 185 ARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 334 LKAIKD 339
KA+ +
Sbjct: 245 QKAVDE 250
Score = 125 (49.1 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A V+I +D +E L+DL G V ++ D +SG+SKG
Sbjct: 174 KSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKD 169
F FV+F E A++A+DE+ K+
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKE 255
Score = 116 (45.9 bits), Expect = 0.00026, P = 0.00026
Identities = 39/180 (21%), Positives = 81/180 (45%)
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
L++G++ TE + GP + +I + +D S + +A+V + + A+++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRICRD-LITSGSSNYAYVNFQHTKDAEHALD 70
Query: 246 KMTSANFK-LDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRH 304
M NF + G + W++ D S S V ++VKNL ++ K L +
Sbjct: 71 TM---NFDVIKGKPVRIMWSQR----DPSLRK-SGVGNIFVKNLDKSINNKALYDTVSAF 122
Query: 305 GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
G + ++G + +GF+H+ +A +AIK ++G+ + V + + + E
Sbjct: 123 GNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE 182
>UNIPROTKB|Q08E07 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
"Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
Length = 461
Score = 173 (66.0 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 43/146 (29%), Positives = 81/146 (55%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
P ++F+G +P+ E+DL+ + E G +FE+ ++KDK +G KG AF+ + +++ A +
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
Query: 161 AIDELCS-KDFKG--KTIRCSMSETNNR-----LFIGNVPKSWTEKEFRKVIEDVGPGVD 212
A L K G + I+ +++ +R LF+G + K T+++ RK+ E G +D
Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-ID 122
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNA 238
+++ P S+ G AFV + +A
Sbjct: 123 ECTVLRGPDGTSK--GCAFVKFQTHA 146
Score = 109 (43.4 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+G L K ++ED+R + EP G + E +++ D G SKG AFV F++ A+ AI+
Sbjct: 96 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 154
Query: 165 LCS 167
L S
Sbjct: 155 LHS 157
Score = 88 (36.0 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
+++ +LP+ T ++ ++F G V KV + + FGF+ + +SA AI+
Sbjct: 378 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 437
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
++I + L+V L RP+ R
Sbjct: 438 NGFQIGMKRLKVQLKRPKDANR 459
Score = 59 (25.8 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
+FI ++P+ +T+ E ++ G V + ++ D +A ++++ F FV + N A A + Q
Sbjct: 378 IFIYHLPQEFTDSEILQMFVPFGH-VISAKVFVD-RATNQSKCFGFVSFDNPASAQAAIQ 435
Query: 246 KMTSANFKLDGNTPTVSWAEPK 267
M F++ V PK
Sbjct: 436 AMNG--FQIGMKRLKVQLKRPK 455
>UNIPROTKB|D6REZ6 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 HOGENOM:HOG000112240 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965724
ProteinModelPortal:D6REZ6 SMR:D6REZ6 Ensembl:ENST00000513473
ArrayExpress:D6REZ6 Bgee:D6REZ6 Uniprot:D6REZ6
Length = 193
Score = 196 (74.1 bits), Expect = 4.7e-15, P = 4.7e-15
Identities = 45/117 (38%), Positives = 70/117 (59%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV-DTI 214
RA+ EL + + + G+ + S N RLFIG +PK +E + I V GV D I
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVI 182
>UNIPROTKB|Q7ZWM3 [details] [associations]
symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
Length = 462
Score = 172 (65.6 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 42/142 (29%), Positives = 81/142 (57%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
P ++FIG +P++ E+DL+ + E G+++E+ ++KDK +G KG AF+ + ++E A +
Sbjct: 4 PDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALK 63
Query: 161 AIDELCS-KDFKG--KTIRCSMSETNNR-----LFIGNVPKSWTEKEFRKVIEDVGPGVD 212
A L K G + I+ +++ +R LF+G + K T+++ R++ E G +D
Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFETFG-NID 122
Query: 213 TIELIKDPQAPSRNRGFAFVLY 234
+++ P S+ G AFV +
Sbjct: 123 ECTVLRGPDGTSK--GCAFVKF 142
Score = 100 (40.3 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+G L K ++ED+R + E G + E +++ D G SKG AFV F++ A+ AI+
Sbjct: 96 KLFVGMLGKQQTDEDVRRMFETFGNIDECTVLRGPD-GTSKGCAFVKFQTHTEAQAAINA 154
Query: 165 L 165
L
Sbjct: 155 L 155
Score = 89 (36.4 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
+++ +LP+ T ++ ++F G V KV + + FGF+ + SA AI+
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQSM 438
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
++I + L+V L RP+ R
Sbjct: 439 NGFQIGMKRLKVQLKRPKDANR 460
>UNIPROTKB|Q5SZQ8 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030317 "sperm
motility" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0030317 GO:GO:0000398 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 CTD:11189 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF329264 EMBL:AY165003 EMBL:AL589765
EMBL:BC052491 EMBL:BC068008 EMBL:BC104758 EMBL:BC143226 EMBL:U80746
EMBL:AF284423 IPI:IPI00852836 IPI:IPI00852895 IPI:IPI00852999
RefSeq:NP_009116.3 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO
ProteinModelPortal:Q5SZQ8 SMR:Q5SZQ8 IntAct:Q5SZQ8
MINT:MINT-4866187 STRING:Q5SZQ8 PhosphoSite:Q5SZQ8 DMDM:74756184
PRIDE:Q5SZQ8 Ensembl:ENST00000290583 GeneID:11189 KEGG:hsa:11189
UCSC:uc001eyr.3 UCSC:uc001eys.2 UCSC:uc009wmx.2
GeneCards:GC01M151674 HGNC:HGNC:11967 HPA:HPA006292 MIM:612678
neXtProt:NX_Q5SZQ8 PharmGKB:PA36654 PhylomeDB:Q5SZQ8
EvolutionaryTrace:Q5SZQ8 GenomeRNAi:11189 NextBio:42591
ArrayExpress:Q5SZQ8 Bgee:Q5SZQ8 CleanEx:HS_TNRC4
Genevestigator:Q5SZQ8 Uniprot:Q5SZQ8
Length = 465
Score = 173 (66.0 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 43/146 (29%), Positives = 81/146 (55%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
P ++F+G +P+ E+DL+ + E G +FE+ ++KDK +G KG AF+ + +++ A +
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
Query: 161 AIDELCS-KDFKG--KTIRCSMSETNNR-----LFIGNVPKSWTEKEFRKVIEDVGPGVD 212
A L K G + I+ +++ +R LF+G + K T+++ RK+ E G +D
Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-ID 122
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNA 238
+++ P S+ G AFV + +A
Sbjct: 123 ECTVLRGPDGTSK--GCAFVKFQTHA 146
Score = 109 (43.4 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+G L K ++ED+R + EP G + E +++ D G SKG AFV F++ A+ AI+
Sbjct: 96 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 154
Query: 165 LCS 167
L S
Sbjct: 155 LHS 157
Score = 88 (36.0 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
+++ +LP+ T ++ ++F G V KV + + FGF+ + +SA AI+
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
++I + L+V L RP+ R
Sbjct: 442 NGFQIGMKRLKVQLKRPKDANR 463
Score = 59 (25.8 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
+FI ++P+ +T+ E ++ G V + ++ D +A ++++ F FV + N A A + Q
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGH-VISAKVFVD-RATNQSKCFGFVSFDNPASAQAAIQ 439
Query: 246 KMTSANFKLDGNTPTVSWAEPK 267
M F++ V PK
Sbjct: 440 AMNG--FQIGMKRLKVQLKRPK 459
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 221 (82.9 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
Identities = 65/270 (24%), Positives = 119/270 (44%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + +FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D ++G+ FV + A+ + KM D + K A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIDKMNGMLLN-DRKVFVGRFKSRKEREAELGA 185
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
A + +Y+KN E+ ++LKE F ++G V GK R FGF+ + A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQ 245
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ D +++G+ + V A+ + ++TE
Sbjct: 246 KAVDDMNGKDLNGKAIFVGRAQKKVERQTE 275
Score = 135 (52.6 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 39/129 (30%), Positives = 61/129 (47%)
Query: 58 EDQSPGANGSHINTEDAVEDE-DKRTASISEDEK----------EKHDQLLALPPHGSEV 106
E+ S G H T++A E DK + D K E+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L++ G V ++ D D G+S+GF FV+F E A++A+D++
Sbjct: 194 YIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMN 252
Query: 167 SKDFKGKTI 175
KD GK I
Sbjct: 253 GKDLNGKAI 261
Score = 38 (18.4 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 407 QQPMIYGRGQMPAGMHMVPMVLP 429
QQP ++ +GQ P M+ P
Sbjct: 531 QQPAVHVQGQEPLTASMLAAAPP 553
>RGD|1563168 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0007283
"spermatogenesis" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0030317
"sperm motility" evidence=ISO] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1563168 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
GO:GO:0048026 GeneTree:ENSGT00560000076837 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AC133978 IPI:IPI00204869
ProteinModelPortal:D4A916 Ensembl:ENSRNOT00000028324
UCSC:RGD:1563168 Uniprot:D4A916
Length = 494
Score = 173 (66.0 bits), Expect = 6.1e-15, Sum P(2) = 6.1e-15
Identities = 43/146 (29%), Positives = 81/146 (55%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
P ++F+G +P+ E+DL+ + E G +FE+ ++KDK +G KG AF+ + +++ A +
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
Query: 161 AIDELCS-KDFKG--KTIRCSMSETNNR-----LFIGNVPKSWTEKEFRKVIEDVGPGVD 212
A L K G + I+ +++ +R LF+G + K T+++ RK+ E G +D
Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-ID 122
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNA 238
+++ P S+ G AFV + +A
Sbjct: 123 ECTVLRGPDGTSK--GCAFVKFQTHA 146
Score = 109 (43.4 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+G L K ++ED+R + EP G + E +++ D G SKG AFV F++ A+ AI+
Sbjct: 96 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 154
Query: 165 LCS 167
L S
Sbjct: 155 LHS 157
Score = 88 (36.0 bits), Expect = 6.1e-15, Sum P(2) = 6.1e-15
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
+++ +LP+ T ++ ++F G V KV + + FGF+ + +SA AI+
Sbjct: 411 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 470
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
++I + L+V L RP+ R
Sbjct: 471 NGFQIGMKRLKVQLKRPKDANR 492
Score = 59 (25.8 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
+FI ++P+ +T+ E ++ G V + ++ D +A ++++ F FV + N A A + Q
Sbjct: 411 IFIYHLPQEFTDSEILQMFVPFGH-VISAKVFVD-RATNQSKCFGFVSFDNPASAQAAIQ 468
Query: 246 KMTSANFKLDGNTPTVSWAEPK 267
M F++ V PK
Sbjct: 469 AMNG--FQIGMKRLKVQLKRPK 488
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 200 (75.5 bits), Expect = 6.3e-15, Sum P(2) = 6.3e-15
Identities = 66/257 (25%), Positives = 130/257 (50%)
Query: 116 SEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
+E++L+++ E + E+ LV G+SKG A++ F+S+ A++ ++E + G+++
Sbjct: 406 TEDELKEVFE---DALEIRLVSQ--DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 460
Query: 176 RCSMS-ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV--DTIE-------LIKDPQ-APS 224
+ E R +W+ + V+ ++ +T++ IK PQ
Sbjct: 461 SLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQQG 520
Query: 225 RNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAEPKSTPDHSAAAASQVKAL 283
+++G+AF+ + A + +++ + S N +++G T + P+ +P+ A + K L
Sbjct: 521 KSKGYAFIEF---ASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPN---ARSQPSKTL 574
Query: 284 YVKNLPENTTTKQLKELFQRHGEV-TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT-E 341
+VK L E+TT + LKE F+ G V ++VT + FGF+ + A KA K+ E
Sbjct: 575 FVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAME 631
Query: 342 KYEIDGQVLEVALARPQ 358
EIDG + + A+P+
Sbjct: 632 DGEIDGNKVTLDWAKPK 648
Score = 193 (73.0 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 79/345 (22%), Positives = 159/345 (46%)
Query: 39 DGNVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDK---RTASISEDEKEKHDQ 95
D + ++ DEDEE D E ++++ + A K + + E +K+K +
Sbjct: 242 DDDDEEEDEDEEEDEEEEEDEEEEEEEEEEEPVKPAPGKRKKEMTKQKEVPEAKKQKVEG 301
Query: 96 LLALPPHGSEVFIGGLPKDASEEDLR-DLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRS 154
+ P +FIG L + S +L+ + EP + ++ +V D +G ++ F +V F S
Sbjct: 302 SESTTPFN--LFIGNLNPNKSVAELKVAISEPFAKN-DLAVV-DVRTGTNRKFGYVDFES 357
Query: 155 KEVAKRAIDELCSKDFKGKTIRCSMSETNNR--------LFIGNVPKSWTEKEFRKVIED 206
E ++A++ K F G I+ + + L N+ + TE E ++V ED
Sbjct: 358 AEDLEKALELTGLKVF-GNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFED 416
Query: 207 VGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEP 266
++ I L+ +++G A++ + + A A+ + ++ A ++DG + ++ +
Sbjct: 417 A---LE-IRLVSQD---GKSKGIAYIEFKSEADAEKNLEEKQGA--EIDGRSVSLYYTGE 467
Query: 267 KSTPDHSAAAAS----QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RD 321
K S + K L + NL + T + L+E+F++ T + P + GK +
Sbjct: 468 KGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQQGKSKG 524
Query: 322 FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ--TNKRTE 364
+ FI +A A +A+ K EI+G+ + + L P+ N R++
Sbjct: 525 YAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQ 569
Score = 163 (62.4 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 80/333 (24%), Positives = 149/333 (44%)
Query: 43 KQNDEDEEYDAETSKEDQSPGANGSHINT-EDAVEDEDKRTASISE-DEKEKHDQLLALP 100
++++E++E++ K Q A + + ED EDE++ E D+ E+ + + P
Sbjct: 161 EEDEEEDEFEPPVVKGKQGKVAAAAPASEDEDEEEDEEEEEEDEEEEDDSEEEEAMEITP 220
Query: 101 PHGSEVFIGGLP---KDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA-----FVAF 152
G + +P K+ +EED D E E + +D++ E +
Sbjct: 221 AKGKKAPAKVVPVKAKNVAEEDDDDEEEDEDEEEDEEEEEDEEEEEEEEEEEPVKPAPGK 280
Query: 153 RSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVD 212
R KE+ K+ E+ + K + + S S T LFIGN+ + + E + I + P
Sbjct: 281 RKKEMTKQK--EV--PEAKKQKVEGSESTTPFNLFIGNLNPNKSVAELKVAISE--PFAK 334
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ D + + NR F +V + + A+ + + K+ GN + +PK
Sbjct: 335 NDLAVVDVRTGT-NRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGRDSK 388
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
AA + L KNL N T +LKE+F+ E+ ++V+ GKS + +I + +
Sbjct: 389 KVRAA---RTLLAKNLSFNITEDELKEVFEDALEI-RLVSQDGKS--KGIAYIEFKSEAD 442
Query: 333 ALKAIKDTEKYEIDGQVLEVALA--RPQTNKRT 363
A K +++ + EIDG+ + + + Q +RT
Sbjct: 443 AEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERT 475
Score = 110 (43.8 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+F+ GL +D +EE L++ E G V +V D+++G SKGF FV F S+E AK A + +
Sbjct: 574 LFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 630
Query: 166 CSKDFKGKTI 175
+ G +
Sbjct: 631 EDGEIDGNKV 640
Score = 63 (27.2 bits), Expect = 6.3e-15, Sum P(2) = 6.3e-15
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 39 DGNVKQNDEDEEYDAETSKEDQSP---GANGSHINTEDAVEDEDKRTASISEDEKEKHD 94
D + ++D DE+ + E E + P G G A EDED+ E+E E+ +
Sbjct: 149 DDDDDEDDSDEDEEDEEEDEFEPPVVKGKQGKVAAAAPASEDEDEEEDEEEEEEDEEEE 207
Score = 55 (24.4 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 39 DGNVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQ 95
D + ++D+D+E D++ +ED+ + + + A SEDE E+ D+
Sbjct: 143 DSDEDEDDDDDEDDSDEDEEDEEEDEFEPPV--VKGKQGKVAAAAPASEDEDEEEDE 197
Score = 53 (23.7 bits), Expect = 6.9e-14, Sum P(2) = 6.9e-14
Identities = 16/67 (23%), Positives = 30/67 (44%)
Query: 39 DGNVKQNDEDEEYDAETSKEDQSPGANGSHI----------NTEDAVEDEDKRTASISED 88
D ++ DE+EE D+E + + A G N + +D+++ ED
Sbjct: 196 DEEEEEEDEEEEDDSEEEEAMEITPAKGKKAPAKVVPVKAKNVAEEDDDDEEEDEDEEED 255
Query: 89 EKEKHDQ 95
E+E+ D+
Sbjct: 256 EEEEEDE 262
Score = 40 (19.1 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 43 KQNDEDEEYDAETSKEDQSPG 63
K+ +ED E + + +ED S G
Sbjct: 22 KEVEEDSEDEEMSEEEDDSSG 42
Score = 37 (18.1 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 61 SPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQ 95
+PG G+ + A ++ + EDE + D+
Sbjct: 120 TPGKKGAVTPAKGAKNGKNAKKEDSDEDEDDDDDE 154
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 212 (79.7 bits), Expect = 6.5e-15, P = 6.5e-15
Identities = 67/273 (24%), Positives = 132/273 (48%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L +D +E+ L +G V + + +D S S G+ +V F A++A++
Sbjct: 10 ASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALE 69
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK+IR S+ + +FI N+ KS K + G + + +
Sbjct: 70 TMNFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGK-IMSSK 128
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D + ++G+ FV Y + AD + ++M N KL ++ T+ A KS D A
Sbjct: 129 VMTDEEG---SKGYGFVHYQDQRAADRAIEEM---NGKLLRDS-TLFVARFKSRKDREAE 181
Query: 276 AA---SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
++ +Y+KN ++ + L+ +F ++G+ V SGK + FGF+ +
Sbjct: 182 LREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHK 241
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A A++D +I+GQ + V A+ + ++ E
Sbjct: 242 AAKNAVEDMNGRDINGQTIFVGRAQKKVERQAE 274
Score = 136 (52.9 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ K++ +L P + V+I D +E LR + G+ V ++KD SG+SK
Sbjct: 173 KSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDA-SGKSKR 231
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
F FV+F S + AK A++++ +D G+TI
Sbjct: 232 FGFVSFDSHKAAKNAVEDMNGRDINGQTI 260
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 207 (77.9 bits), Expect = 6.6e-15, Sum P(2) = 6.6e-15
Identities = 74/293 (25%), Positives = 142/293 (48%)
Query: 111 LPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF 170
LP ++++L+++ E + E+ LV KD G+SKG A++ F+++ A++ +E +
Sbjct: 405 LPYKVTQDELKEVFE---DAVEIRLVS-KD-GKSKGIAYIEFKTEADAEKTFEEKQGTEI 459
Query: 171 KGKTIRCSMS--ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV--DTIE-------LIKD 219
G++I + + ++ + G +W+ + V+ ++ +T++ IK
Sbjct: 460 DGRSISLYYTGEKGQSQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKV 519
Query: 220 PQAPS-RNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPKSTPDHSAAAA 277
PQ + +++G+AF+ + A + +++ + S N + ++G + P+ +P+ A +
Sbjct: 520 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN---ARS 573
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEV-TKVVTPPGKSGKRDFGFIHYAERSSALKA 336
K L+VK L E+TT + LKE F G V ++VT + FGF+ + A KA
Sbjct: 574 QPSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDA-KA 630
Query: 337 IKDT-EKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAG 388
K+ E EIDG + + A+P+ G G G G G F G
Sbjct: 631 AKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRRGQGGFGG 683
Score = 196 (74.1 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 86/353 (24%), Positives = 166/353 (47%)
Query: 39 DGNVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDED------KRTASISEDE--- 89
D + +++DEDEE D E +ED+ E+ E+E KR +++ +
Sbjct: 238 DEDEEEDDEDEEDDDE-EEEDEDDDEEEDEEEEEEEEEEEPVKEAPGKRKKEMAKQKAAP 296
Query: 90 KEKHDQLLALPPHGS-EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+ K ++ A P S +F+G L S +L+ + ++ +V D G S+ F
Sbjct: 297 EAKKQKVEATEPTTSFNLFVGNLNFSKSAPELKTGISDLFAKNDLAVV-DVRIGVSRKFG 355
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRC-------SMSETNNRLFIG-NVPKSWTEKEF 200
+V F S E ++A++ K F G I+ S + + R + N+P T+ E
Sbjct: 356 YVDFESAEDLEKALELTGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDEL 414
Query: 201 RKVIEDVGPGVDTIELI-KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTP 259
++V ED V+ I L+ KD +++G A++ + A A+ + ++ ++DG +
Sbjct: 415 KEVFEDA---VE-IRLVSKD----GKSKGIAYIEFKTEADAEKTFEEKQGT--EIDGRSI 464
Query: 260 TVSWAEPKS-TPDHSAAAAS----QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPP 314
++ + K + D+ S + K L + NL + T + L+E+F++ T + P
Sbjct: 465 SLYYTGEKGQSQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQ 521
Query: 315 GKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ--TNKRTE 364
++GK + + FI +A A +A+ K EI+G+ + + L P+ N R++
Sbjct: 522 NQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQ 574
Score = 146 (56.5 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 72/323 (22%), Positives = 136/323 (42%)
Query: 43 KQNDEDE-EYDAETSKEDQS-PGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALP 100
+ DEDE E++ K + P ++ + ED ED+D+ ED+ E+ + + P
Sbjct: 159 EDEDEDEDEFEPTVMKAAAAAPASDEEEDDEEDDDEDDDEEDEDEDEDDSEE-EAMETTP 217
Query: 101 PHGSEVFIGGLP----KDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
G + + +P A +ED + E + E +D D E + +
Sbjct: 218 AKGKKAPVKAVPVKAKSTAEDEDEEEDDEDEEDDDEEEEDEDDDEEEDEEEEEEEEEEEP 277
Query: 157 VA-------KRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
V K + + + K + + + T+ LF+GN+ S + E + I D+
Sbjct: 278 VKEAPGKRKKEMAKQKAAPEAKKQKVEATEPTTSFNLFVGNLNFSKSAPELKTGISDLFA 337
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST 269
D + D + +R F +V + + A+ + + K+ GN + +PK
Sbjct: 338 KNDLA--VVDVRI-GVSRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGK 389
Query: 270 PDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAE 329
A + L KNLP T +LKE+F+ E+ ++V+ GKS + +I +
Sbjct: 390 DSKKDRDA---RTLLAKNLPYKVTQDELKEVFEDAVEI-RLVSKDGKS--KGIAYIEFKT 443
Query: 330 RSSALKAIKDTEKYEIDGQVLEV 352
+ A K ++ + EIDG+ + +
Sbjct: 444 EADAEKTFEEKQGTEIDGRSISL 466
Score = 55 (24.4 bits), Expect = 6.6e-15, Sum P(2) = 6.6e-15
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 39 DGNVKQNDEDEEYDAETSKED--QSPGANGSH-------INTEDAVEDEDKRTASISE-- 87
D + ++EDE+ D + S+E+ ++ A G + + EDED+ E
Sbjct: 191 DDDEDDDEEDEDEDEDDSEEEAMETTPAKGKKAPVKAVPVKAKSTAEDEDEEEDDEDEED 250
Query: 88 DEKEKHDQ 95
D++E+ D+
Sbjct: 251 DDEEEEDE 258
Score = 54 (24.1 bits), Expect = 8.4e-15, Sum P(2) = 8.4e-15
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 41 NVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHD 94
N K+ D DEE D ++ +ED+ ED E + A+ + E+ D
Sbjct: 139 NAKKEDSDEEDDDDSEEEDEE-----DEDEDEDEFEPTVMKAAAAAPASDEEED 187
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 217 (81.4 bits), Expect = 7.3e-15, P = 7.3e-15
Identities = 70/267 (26%), Positives = 121/267 (45%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L + ++ L D +G V V + +D + S G+ +V F + + A RAI
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 164 ELCSKDFKGKTIRCSMSETN---NRLFIGNV-PKSWTEKEFRKVIEDVGPGVDTIELIKD 219
EL GK IR S + R GN+ K+ E K + D I K
Sbjct: 96 ELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKV 155
Query: 220 P-QAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+ +++G+ FV Y N A + +K+ L+ V + D S A +
Sbjct: 156 AVDSSGQSKGYGFVQYANEESAQKAIEKLNG--MLLNDKQVYVGPFLRRQERD-STANKT 212
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGKRDFGFIHYAERSSALKAI 337
+ +YVKNL E+TT LK F +G++T VV G+ + FGF+++ A +A+
Sbjct: 213 KFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAV 272
Query: 338 KDTEKYEIDGQVLEVALARPQTNKRTE 364
+ ++ D + V A+ ++ + TE
Sbjct: 273 ESLNGHKFDDKEWYVGRAQKKSERETE 299
Score = 143 (55.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 53/191 (27%), Positives = 92/191 (48%)
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
+++ N+ +S T+ + + + G + + ++KD + S+ GF FV + N AD + +
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGK-ITSAVVMKDGEGKSK--GFGFVNFEN---ADDAAR 270
Query: 246 KMTSAN-FKLDGNTPTVSWAEPKSTPD-----------HSAAAASQVKALYVKNLPENTT 293
+ S N K D V A+ KS + AA Q LYVKNL + +
Sbjct: 271 AVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSIS 330
Query: 294 TKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLE 351
++LKE+F G VT KV+ P + K GF+ +A A +A+ I+ + L
Sbjct: 331 DEKLKEIFSPFGTVTSSKVMRDPNGTSKGS-GFVAFATPEEATEAMSQLSGKMIESKPLY 389
Query: 352 VALARPQTNKR 362
VA+A+ + ++R
Sbjct: 390 VAIAQRKEDRR 400
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 217 (81.4 bits), Expect = 7.3e-15, P = 7.3e-15
Identities = 64/266 (24%), Positives = 121/266 (45%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D S S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRLF---IGNV-PKSWTEKEFRKVIEDVGPGVDTIELIKD 219
+ + KG+ +R S+ + L +GNV K+ + K + D I K
Sbjct: 71 TMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKV 130
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
+ +RG FV + A + Q M D + K A A +
Sbjct: 131 VCDENGSRGHGFVHFETQEAATRAIQTMNGMLLN-DRKVFVGHFKSRKEREAEFGARAME 189
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIK 338
+Y+KN ++ +L+E+F R G+ V +G+ + FGF+++ + A KA+
Sbjct: 190 FTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVA 249
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
D EI+G+++ V A+ + +++E
Sbjct: 250 DMNGKEINGRMVYVGRAQKRLERQSE 275
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 172 (65.6 bits), Expect = 7.7e-15, Sum P(2) = 7.7e-15
Identities = 42/142 (29%), Positives = 81/142 (57%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
P ++FIG +P++ E+DL+ + E G+++E+ ++KDK +G KG AF+ + ++E A +
Sbjct: 4 PDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALK 63
Query: 161 AIDELCS-KDFKG--KTIRCSMSETNNR-----LFIGNVPKSWTEKEFRKVIEDVGPGVD 212
A L K G + I+ +++ +R LF+G + K T+++ R++ E G +D
Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFEPFG-NID 122
Query: 213 TIELIKDPQAPSRNRGFAFVLY 234
+++ P S+ G AFV +
Sbjct: 123 ECTVLRGPDGTSK--GCAFVKF 142
Score = 108 (43.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+G L K ++ED+R + EP G + E +++ D G SKG AFV F++ A+ AI+
Sbjct: 96 KLFVGMLGKQQTDEDVRRMFEPFGNIDECTVLRGPD-GTSKGCAFVKFQTHTEAQAAINA 154
Query: 165 L 165
L
Sbjct: 155 L 155
Score = 87 (35.7 bits), Expect = 7.7e-15, Sum P(2) = 7.7e-15
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
+++ +LP+ T ++ ++F G V KV + + FGF+ + SA AI+
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQAM 438
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
++I + L+V L RP+ R
Sbjct: 439 NGFQIGMKRLKVQLKRPKDANR 460
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 216 (81.1 bits), Expect = 9.5e-15, P = 9.5e-15
Identities = 65/266 (24%), Positives = 119/266 (44%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ ++IG L D +E L + P G + + + +D + S +A++ F+ A+RA+D
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRLF---IGNV-PKSWTEKEFRKVIEDVGPGVDTIELIKD 219
+ + KG+ IR S+ + L +GNV K+ E K + D I K
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKV 130
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
+RG+ FV + + A+ + Q M D + + A +
Sbjct: 131 VCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLN-DRKVFVGHFKSRRERELEYGAKVME 189
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIK 338
+Y+KN E+ K+L+E+F G V SG+ R FGF++Y A KA+
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVS 249
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ E++G+++ V A+ + +++E
Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIERQSE 275
Score = 123 (48.4 bits), Expect = 0.00021, P = 0.00021
Identities = 50/197 (25%), Positives = 91/197 (46%)
Query: 179 MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNA 238
M TN ++I N + +K R++ G + +++++ D R+RGF FV Y N+
Sbjct: 188 MEFTN--VYIKNFGEDMDDKRLREIFSAFGNTL-SVKVMMDDSG--RSRGFGFVNYGNHE 242
Query: 239 CADYSRQKMTSANFKLDGNTPTVSWAEPK-STPDHSAAAASQVKA----------LYVKN 287
A + +M +++G V A+ + Q+K LYVKN
Sbjct: 243 EAQKAVSEMNGK--EVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKN 300
Query: 288 LPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEI 345
L + +L++ F +G +T KV+T G S + FGF+ ++ A KA+ + +
Sbjct: 301 LDDGIDDDRLRKEFLPYGTITSAKVMTEGGHS--KGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 346 DGQVLEVALARPQTNKR 362
+ L VALA+ + ++
Sbjct: 359 STKPLYVALAQRKEERK 375
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 215 (80.7 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 66/266 (24%), Positives = 118/266 (44%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ ++IG L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRLF---IGNV-PKSWTEKEFRKVIEDVGPGVDTIELIKD 219
+ + KG+ IR S+ + L +GNV K+ + K + D I K
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKV 130
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
+RG+ FV + A+ + Q M D + + A +
Sbjct: 131 VCDEYGSRGYGFVHFETQEAANRAIQTMNGMLLN-DRKVFVGHFKSRRERELEYGAKVME 189
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIK 338
+Y+KN E+ K+LKE+F G V SG+ R FGF++Y A KA+
Sbjct: 190 FTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVT 249
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ E++G+++ V A+ + ++ E
Sbjct: 250 EMNGKEVNGRMVYVGRAQKRIERQGE 275
Score = 124 (48.7 bits), Expect = 0.00016, P = 0.00016
Identities = 50/198 (25%), Positives = 94/198 (47%)
Query: 179 MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNA 238
M TN ++I N + +K +++ G + +++++ D R+RGF FV Y N+
Sbjct: 188 MEFTN--VYIKNFGEDMDDKRLKEIFSAFGNTL-SVKVMMDNSG--RSRGFGFVNYGNH- 241
Query: 239 CADYSRQKMTSANFK-LDGNTPTVSWAEPK-STPDHSAAAASQVKA----------LYVK 286
+ +++ +T N K ++G V A+ + Q+K LYVK
Sbjct: 242 --EEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVK 299
Query: 287 NLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYE 344
NL + +L++ F +G +T KV+T G S + FGF+ ++ A KA+ +
Sbjct: 300 NLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHS--KGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 345 IDGQVLEVALARPQTNKR 362
+ + L VALA+ + ++
Sbjct: 358 VSTKPLYVALAQRKEERK 375
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 214 (80.4 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 66/266 (24%), Positives = 120/266 (45%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRLF---IGNV-PKSWTEKEFRKVIEDVGPGVDTIELIKD 219
+ + KG+ IR S+ + L +GNV K+ + K + D I K
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
+RGF FV + + A + + M D + + A A +
Sbjct: 131 VCDDHGSRGFGFVHFETHEAAQNAIRTMNGMLLN-DRKVFVGHFKSRREREAELGARALE 189
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERSSALKAIK 338
+YVKNL + + L++LF + G++ V SG R FGF+++ + A KA+
Sbjct: 190 FTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVT 249
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
D E+ G++L V A+ + ++ E
Sbjct: 250 DMNGKEVSGRLLYVGRAQKRVERQNE 275
Score = 124 (48.7 bits), Expect = 0.00016, P = 0.00016
Identities = 26/89 (29%), Positives = 49/89 (55%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ +E+ +L A + +++ L D E L+DL G++ V +++D DSG S+G
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRD-DSGHSRG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
F FV F E A++A+ ++ K+ G+ +
Sbjct: 233 FGFVNFEKHEDAQKAVTDMNGKEVSGRLL 261
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 214 (80.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 64/266 (24%), Positives = 118/266 (44%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRLF---IGNV-PKSWTEKEFRKVIEDVGPGVDTIELIKD 219
+ + KG+ IR S+ + L +GNV K+ E K + D I K
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKV 130
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
+RG+ FV + A+ + Q M D + + A +
Sbjct: 131 VCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLN-DRKVFVGHFKSRRERELEYGAKVME 189
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIK 338
+Y+KN E+ K+L+E+F G V +G+ R FGF++Y A KA+
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVS 249
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ E++G+++ V A+ + ++ E
Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIERQGE 275
Score = 123 (48.4 bits), Expect = 0.00021, P = 0.00021
Identities = 50/197 (25%), Positives = 91/197 (46%)
Query: 179 MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNA 238
M TN ++I N + +K R++ G + +++++ D R+RGF FV Y N+
Sbjct: 188 MEFTN--VYIKNFGEDMDDKRLREIFSAFGNTL-SVKVMMDDTG--RSRGFGFVNYGNHE 242
Query: 239 CADYSRQKMTSANFKLDGNTPTVSWAEPK-STPDHSAAAASQVKA----------LYVKN 287
A + +M +++G V A+ + Q+K LYVKN
Sbjct: 243 EAQKAVSEMNGK--EVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKN 300
Query: 288 LPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEI 345
L + +L++ F +G +T KV+T G S + FGF+ ++ A KA+ + +
Sbjct: 301 LDDGIDDDRLRKEFSPYGTITSAKVMTEGGHS--KGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 346 DGQVLEVALARPQTNKR 362
+ L VALA+ + ++
Sbjct: 359 STKPLYVALAQRKEERK 375
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 217 (81.4 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 62/270 (22%), Positives = 123/270 (45%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KG+ +R S+ + +FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D ++G+ FV + + A+ + +KM D + K A
Sbjct: 130 VVCDENG---SKGYGFVHFETHEAAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAEMGA 185
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
A + +Y+KN E+ ++LKE+F ++G + SGK + FGF+ + A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQ 245
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A+ + E++G+ + V A+ + ++TE
Sbjct: 246 RAVDEMNGKEMNGKQVYVGRAQKKGERQTE 275
Score = 137 (53.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 38/129 (29%), Positives = 62/129 (48%)
Query: 58 EDQSPGANGSHINTEDAVEDE-DKRTASISEDEK----------EKHDQLLALPPHGSEV 106
E+ S G H T +A E +K + D K E+ ++ A + V
Sbjct: 134 ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+++ G + ++ D DSG+SKGF FV+F E A+RA+DE+
Sbjct: 194 YIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK +
Sbjct: 253 GKEMNGKQV 261
Score = 38 (18.4 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 407 QQPMIYGRGQMPAGMHMVPMVLP 429
QQP ++ +GQ P M+ P
Sbjct: 532 QQPAVHVQGQEPLTASMLAAAPP 554
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 212 (79.7 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 72/286 (25%), Positives = 135/286 (47%)
Query: 116 SEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
+E++L+++ E + E+ LV G SKG A++ F+S+ A++ ++E + G+++
Sbjct: 263 TEDELKEVFE---DAVEIRLVSQ--DGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 317
Query: 176 RCSMS-ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV--DTIE-------LIKDPQAP-S 224
+ E R +W+ + V+ ++ +T++ IK PQ P
Sbjct: 318 SLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHG 377
Query: 225 RNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAEPKSTPDHSAAAASQVKAL 283
+++G+AF+ + A + +++ + S N +++G T + P+ +P+ A + K L
Sbjct: 378 KSKGYAFIEF---ASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPN---ARSQPSKTL 431
Query: 284 YVKNLPENTTTKQLKELFQRHGEV-TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEK 342
+VK L E+TT + LKE F+ G V ++VT + FGF+ + A A + E
Sbjct: 432 FVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKTAKEAMED 489
Query: 343 YEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAG 388
EIDG + + A+P+ G G G G G F G
Sbjct: 490 GEIDGNKVTLDWAKPKGKGGFGGRGGGRGGFGGRGGGRGGRGGFGG 535
Score = 187 (70.9 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 86/349 (24%), Positives = 155/349 (44%)
Query: 41 NVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALP 100
N K+ D DE+ D E E+ + ED E+E+ A+ + +KE Q A
Sbjct: 98 NAKKEDRDEDEDEEDEDEEDE-----DEEDDEDEEEEEEPVKAAPGKRKKEMTKQKEAPE 152
Query: 101 P-----HGSE------VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAF 149
GSE +FIG L K +E L+ + ++ V D +G ++ F +
Sbjct: 153 AKKQKIEGSEPTTPFNLFIGNLNKSVAE--LKVAISDLFAKNDLAAV-DVRTGTNRKFGY 209
Query: 150 VAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNR--------LFIGNVPKSWTEKEFR 201
V F S E ++A++ K F G I+ + + L N+ + TE E +
Sbjct: 210 VDFESAEDLEKALELTGLKVF-GNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELK 268
Query: 202 KVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTV 261
+V ED V+ I L+ R++G A++ + + A A+ + ++ A ++DG + ++
Sbjct: 269 EVFEDA---VE-IRLVSQD---GRSKGIAYIEFKSEADAEKNLEEKQGA--EIDGRSVSL 319
Query: 262 SWAEPKSTPDHSAAAAS----QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS 317
+ K S + K L + NL + T + L+E+F++ + P GKS
Sbjct: 320 YYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHGKS 379
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ--TNKRTE 364
+ + FI +A A +A+ K EI+G+ + + L P+ N R++
Sbjct: 380 --KGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQ 426
Score = 144 (55.7 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 85/334 (25%), Positives = 143/334 (42%)
Query: 36 VGRDGNVKQNDEDEEYDAETSKEDQSPGANGSHINTEDA---VEDEDKRTASISEDEKEK 92
V D ++ EDE+ D+ +E P G T A V + K+ A++ K+
Sbjct: 24 VEEDSEDEEMSEDED-DSSGEEEVVIPQKKGKKATTTPAKKVVVSQTKK-AAVPTPAKKA 81
Query: 93 HDQLLALPPHGSEVFIGGLPKDASE-EDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVA 151
+P G + +D E ED D E E E +D++ E A
Sbjct: 82 VTPAKVVPTPGKKNGKNAKKEDRDEDEDEEDEDEE-DEDEEDD--EDEEEEEEPVKAAPG 138
Query: 152 FRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
R KE+ K+ E + + K + I S T LFIGN+ KS E + I D+
Sbjct: 139 KRKKEMTKQK--E--APEAKKQKIEGSEPTTPFNLFIGNLNKSVAE--LKVAISDLFAKN 192
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
D + D + + NR F +V + + A+ + + K+ GN + +PK
Sbjct: 193 DLAAV--DVRTGT-NRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGRDS 244
Query: 272 HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERS 331
AA + L KNL N T +LKE+F+ E+ ++V+ G+S + +I + +
Sbjct: 245 KKVRAA---RTLLAKNLSFNITEDELKEVFEDAVEI-RLVSQDGRS--KGIAYIEFKSEA 298
Query: 332 SALKAIKDTEKYEIDGQVLEVALA--RPQTNKRT 363
A K +++ + EIDG+ + + + Q +RT
Sbjct: 299 DAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERT 332
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 212 (79.7 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 69/271 (25%), Positives = 120/271 (44%)
Query: 102 HG---SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
HG S +++G L D +E L ++ PIG + + + +D + S G+A++ F+ A
Sbjct: 6 HGCSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 159 KRAIDELCSKDFKGKTIRCSMSETN---NRLFIGNV-PKSWTEKEFRKVIEDVGPGVDTI 214
+RA+D + + KG+ IR S + R +GN+ K+ K + D +I
Sbjct: 66 ERALDTMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSI 125
Query: 215 ELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
K +RGF FV + + A + M D + +
Sbjct: 126 LSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLN-DRKVFVGHFKSRQKREAELG 184
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSA 333
A A +YVKNL + + L++LF + G+ V +G+ R FGFI++ + A
Sbjct: 185 ARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEA 244
Query: 334 LKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ E+ GQ+L V A+ + ++ E
Sbjct: 245 QKAVDHMNGKEVSGQLLYVGRAQKRAERQNE 275
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 212 (79.7 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 70/269 (26%), Positives = 125/269 (46%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRLF---IGNV-PKSWTEKEFRKVIEDVGPGVDTIELIKD 219
+ + KG+ IR S+ + L +GN+ K+ + K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA---AA 276
+RGF FV + + A +Q + + N L N V KS + A A
Sbjct: 131 ACDEHGSRGFGFVHFETHEAA---QQAINTMNGMLL-NDRKVFVGHFKSRREREAELGAR 186
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERSSALK 335
A + +YVKNLP + + L++LF + G++ V SG R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 336 AIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+ E+ G++L A+ + ++ E
Sbjct: 247 AVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Score = 122 (48.0 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 29/108 (26%), Positives = 57/108 (52%)
Query: 69 INTEDAVEDEDKRT-ASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPI 127
INT + + D++ + +E+ +L A + +++ LP D E+ L+DL
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQF 214
Query: 128 GEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
G++ V +++D +SG S+ F FV F E A++A+ + K+ G+ +
Sbjct: 215 GKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 99 (39.9 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
LYVKNL ++ +L++ F +G +T KV+T G S + FGF+ ++ A KA+ +
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHS--KGFGFVCFSSPEEATKAVTEM 353
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
+ + L VALA+ + ++
Sbjct: 354 NGRIVGTKPLYVALAQRKEERK 375
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 215 (80.7 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 61/270 (22%), Positives = 122/270 (45%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L +D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KG+ +R S+ + +FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D ++G+ FV + A+ + KM D + K A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIDKMNGMLLN-DRKVFVGRFKSRKEREAELGA 185
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
A + +Y+KN ++ ++LKE+F ++G V +GK + FGF+ + A
Sbjct: 186 RAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQ 245
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + +++G+ + V A+ + ++TE
Sbjct: 246 KAVDEMNGKDMNGKSMFVGRAQKKVERQTE 275
Score = 144 (55.7 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 40/129 (31%), Positives = 64/129 (49%)
Query: 58 EDQSPGANGSHINTEDAVEDE-DKRTASISEDEK----------EKHDQLLALPPHGSEV 106
E+ S G H T++A E DK + D K E+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I D ++E L+++ G V ++ D D+G+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
KD GK++
Sbjct: 253 GKDMNGKSM 261
Score = 38 (18.4 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 407 QQPMIYGRGQMPAGMHMVPMVLP 429
QQP ++ +GQ P M+ P
Sbjct: 531 QQPAVHVQGQEPLTASMLAAAPP 553
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 209 (78.6 bits), Expect = 3.2e-14, P = 3.2e-14
Identities = 60/215 (27%), Positives = 104/215 (48%)
Query: 65 NGSHINTEDAVEDEDKRTAS-ISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDL 123
+G + ++ E++ T S E ++ ++ ++FIGGL + +++ LRD
Sbjct: 123 DGENSKNDNYNENQSALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDY 182
Query: 124 CEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKD--FKGKTI---RC- 177
E GEV + +++D +G S+GF F+ F++ + ++E+ SK+ GK I R
Sbjct: 183 FEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNP----KCVNEVMSKEHHLDGKIIDPKRAI 238
Query: 178 --SMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVD-TIELIKDPQAPSRNRGFAFVLY 234
E ++F+G VP TE+EFR G +D T+ + KD P RGF FV Y
Sbjct: 239 PREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRP---RGFGFVTY 295
Query: 235 YNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST 269
N + + + M+ + G V A PK++
Sbjct: 296 ENESAVEAT---MSQPYITIHGKPVEVKRATPKAS 327
Score = 142 (55.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 47/182 (25%), Positives = 82/182 (45%)
Query: 183 NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADY 242
+ ++FIG + T+ R E G +D +++D R+RGF F+ + N C +
Sbjct: 162 DGKMFIGGLNWETTDDSLRDYFEQFGEVLDCT-VMRD-STTGRSRGFGFLTFKNPKCVN- 218
Query: 243 SRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQ 302
++ S LDG A P+ + +A ++V +P + T ++ + F
Sbjct: 219 ---EVMSKEHHLDGKIIDPKRAIPREEQEKTAK-------MFVGGVPGDCTEEEFRNFFN 268
Query: 303 RHGEVTKVVTPPGK-SGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTN 360
+ G V K +G+ R FGF+ Y E SA++A I G+ +EV A P+ +
Sbjct: 269 QFGRVLDATLMMDKDTGRPRGFGFVTY-ENESAVEATMSQPYITIHGKPVEVKRATPKAS 327
Query: 361 KR 362
R
Sbjct: 328 LR 329
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 210 (79.0 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 70/275 (25%), Positives = 126/275 (45%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
P S +++G L + SE+ L ++ +G V + + +D ++ S +A+V + + A+R
Sbjct: 7 PISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAER 66
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+D L + +GK R S+ + L FI N+ K K G +
Sbjct: 67 ALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFG-NIL 125
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEP-KSTPD 271
+ +++ D S+ GF FV Y AD + K+ ++G V P KS+ +
Sbjct: 126 SCKVVTDDGNSSK--GFGFVHYETQESADKAIAKVNG--MMINGQKVFVG---PFKSSKE 178
Query: 272 HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAER 330
+ ++ KNL E+ QLKEL Q++GE+T + GK + FGF ++ E
Sbjct: 179 RGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANF-ES 237
Query: 331 SSALKAIKDTEKYEI-DGQVLEVALARPQTNKRTE 364
+ A K + + E +I G+ + A+ + + E
Sbjct: 238 AEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAE 272
Score = 180 (68.4 bits), Expect = 8.9e-11, P = 8.9e-11
Identities = 69/277 (24%), Positives = 122/277 (44%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D D SKGF FV + ++E A +AI ++
Sbjct: 100 VFIKNLDKGIDHKALYDTFSAFGNILSCKVVTD-DGNSSKGFGFVHYETQESADKAIAKV 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG-----------VDTI 214
G+ + +++ K +T F+ + EDVGP + I
Sbjct: 159 NGMMINGQKVFVGPFKSSKERGQPTEVK-FTNVFFKNLSEDVGPDQLKELLQQYGEITNI 217
Query: 215 ELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSW-AEPKSTPD-- 271
++ D + S+ GFA N A+ ++ + + N K+ P + A+ K +
Sbjct: 218 TIMADDKGKSKGFGFA-----NFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAE 272
Query: 272 --HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSG-KRDFGFIHY 327
H+ Q LY+KN+ ++ +L+E+F + G +T +V K+ + FGF+ Y
Sbjct: 273 LKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCY 332
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A +A+ + I + L VALA+ + +R +
Sbjct: 333 TAPDEATRAVTEMNGRMIGTKPLYVALAQRKDIRRAQ 369
Score = 158 (60.7 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 63/247 (25%), Positives = 103/247 (41%)
Query: 39 DGNVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLA 98
DGN + Y+ + S + NG IN + K + + + K
Sbjct: 133 DGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKF----- 187
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+ VF L +D + L++L + GE+ + ++ D D G+SKGF F F S E A
Sbjct: 188 -----TNVFFKNLSEDVGPDQLKELLQQYGEITNITIMAD-DKGKSKGFGFANFESAEAA 241
Query: 159 KRAIDELCSKDFKGKTIRCSMS--------------ETNNR---LFIGNVPKSWTEKEFR 201
K ++ K F GK I + ET + L+I N+ S + R
Sbjct: 242 KNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLR 301
Query: 202 KVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT- 260
+V G I ++KD +A + ++GF FV Y D + + +T N ++ G P
Sbjct: 302 EVFSQFGTITSAI-VMKDDKATT-SKGFGFVCY---TAPDEATRAVTEMNGRMIGTKPLY 356
Query: 261 VSWAEPK 267
V+ A+ K
Sbjct: 357 VALAQRK 363
>ZFIN|ZDB-GENE-040718-300 [details] [associations]
symbol:celf4 "CUGBP, Elav-like family member 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
Bgee:Q6DGV1 Uniprot:Q6DGV1
Length = 520
Score = 166 (63.5 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
Identities = 43/142 (30%), Positives = 80/142 (56%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++FIG +P++ E+DLR L E G+++E+ ++KD+ +G KG AF+ + ++E A +A
Sbjct: 48 KLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQTA 107
Query: 165 LCS-KDFKG--KTIRCSMSETNNR-----LFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
L K G + I+ +++ +R LF+G + K E + R++ E G ++ +
Sbjct: 108 LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQCEDDVRRLFESFG-SIEECTI 166
Query: 217 IKDPQAPSRNRGFAFVLYYNNA 238
++ P S+ G AFV Y +A
Sbjct: 167 LRGPDGNSK--GCAFVKYSTHA 186
Score = 96 (38.9 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+G L K E+D+R L E G + E +++ D G SKG AFV + + A+ AI
Sbjct: 136 KLFVGMLNKQQCEDDVRRLFESFGSIEECTILRGPD-GNSKGCAFVKYSTHAEAQAAISA 194
Query: 165 L 165
L
Sbjct: 195 L 195
Score = 86 (35.3 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
L++ +LP+ +L ++F G V +KV + + FGF+ + SA AI+
Sbjct: 437 LFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPGSAQAAIQSM 496
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
++I + L+V L RP+ R
Sbjct: 497 NGFQIGMKRLKVQLKRPKDANR 518
>UNIPROTKB|A7MB95 [details] [associations]
symbol:CUGBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:PTLYNQS EMBL:DAAA02041602
EMBL:DAAA02041603 EMBL:DAAA02041604 EMBL:BC151433 IPI:IPI00824850
RefSeq:NP_001094682.1 UniGene:Bt.16531 SMR:A7MB95 STRING:A7MB95
Ensembl:ENSBTAT00000003274 GeneID:540475 KEGG:bta:540475
InParanoid:A7MB95 NextBio:20878658 Uniprot:A7MB95
Length = 486
Score = 172 (65.6 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
Identities = 55/186 (29%), Positives = 94/186 (50%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSG--ESKGFAFVAFRSKEVAKRAI 162
++F+G +P+ SE+DLR+L E G V+E+ +++D+ +SKG FV F +++ A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 163 DELCS-KDFKGKTIRCSM----SETNN-----RLFIGNVPKSWTEKEFRKVIEDVGPGVD 212
+ L + K G M SE NN +LFIG + K TE + R + G ++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ-IE 135
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG-NTP-TVSWAEPKSTP 270
+++ P SR G AFV + A A + + M A ++G ++P V +A+ +
Sbjct: 136 ECRILRGPDGLSR--GCAFVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPMVVKFADTQKDK 192
Query: 271 DHSAAA 276
+ A
Sbjct: 193 EQKRMA 198
Score = 141 (54.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 39/157 (24%), Positives = 78/157 (49%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKD-PQAPSRNRGFAFVLYYNNACADYS 243
++F+G VP++W+EK+ R++ E G V I +++D Q P +++G FV +Y A +
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 244 RQKMTSANFK-LDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQ 302
+ + N K L G + +P + ++A + + L++ + + T ++ +F
Sbjct: 76 QNALH--NMKVLPGMHHPIQM-KPADSEKNNAV---EDRKLFIGMISKKCTENDIRVMFS 129
Query: 303 RHGEVTKVVTPPGKSG-KRDFGFIHYAERSSALKAIK 338
G++ + G G R F+ + R+ A AIK
Sbjct: 130 SFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIK 166
Score = 78 (32.5 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
L++ +LP+ + L ++F G V KV + + FGF+ Y SA AI+
Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
++I + L+V L R + + +
Sbjct: 463 NGFQIGMKRLKVQLKRSKNDSK 484
>UNIPROTKB|Q92879 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=ISS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0042835 "BRE binding" evidence=IDA] [GO:0016246
"RNA interference" evidence=NAS] [GO:0007281 "germ cell
development" evidence=NAS] [GO:0009790 "embryo development"
evidence=NAS] [GO:0030529 "ribonucleoprotein complex" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0043484 "regulation of RNA
splicing" evidence=IDA] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 EMBL:CH471064 GO:GO:0016246
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0003676 GO:GO:0009790 GO:GO:0030529
GO:GO:0007281 GO:GO:0043484 GO:GO:0000900 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X EMBL:U63289 EMBL:AF248648 EMBL:AF267533
EMBL:AF267534 EMBL:AJ007988 EMBL:AK304430 EMBL:AB210019
EMBL:AC090559 EMBL:BC031079 IPI:IPI00034015 IPI:IPI00218388
IPI:IPI00218389 IPI:IPI00853009 IPI:IPI00956101
RefSeq:NP_001020767.1 RefSeq:NP_001166110.1 RefSeq:NP_001166111.1
RefSeq:NP_006551.1 RefSeq:NP_941989.1 UniGene:Hs.595333 PDB:2CPZ
PDB:2DHS PDB:2RQ4 PDB:2RQC PDB:3NMR PDB:3NNA PDB:3NNC PDB:3NNH
PDBsum:2CPZ PDBsum:2DHS PDBsum:2RQ4 PDBsum:2RQC PDBsum:3NMR
PDBsum:3NNA PDBsum:3NNC PDBsum:3NNH ProteinModelPortal:Q92879
SMR:Q92879 IntAct:Q92879 MINT:MINT-1382906 STRING:Q92879
PhosphoSite:Q92879 DMDM:17374605 PaxDb:Q92879 PRIDE:Q92879
DNASU:10658 Ensembl:ENST00000310513 Ensembl:ENST00000358597
Ensembl:ENST00000361904 Ensembl:ENST00000395290
Ensembl:ENST00000395292 Ensembl:ENST00000532048 GeneID:10658
KEGG:hsa:10658 UCSC:uc001nfk.2 UCSC:uc001nfl.3 UCSC:uc001nfm.3
UCSC:uc001nfn.3 GeneCards:GC11M047602 HGNC:HGNC:2549 HPA:CAB016114
MIM:601074 neXtProt:NX_Q92879 PharmGKB:PA27045 InParanoid:Q92879
PhylomeDB:Q92879 ChiTaRS:CELF1 EvolutionaryTrace:Q92879
GenomeRNAi:10658 NextBio:40521 ArrayExpress:Q92879 Bgee:Q92879
CleanEx:HS_CUGBP1 Genevestigator:Q92879 GermOnline:ENSG00000149187
GO:GO:0042835 GO:GO:0006376 Uniprot:Q92879
Length = 486
Score = 172 (65.6 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
Identities = 55/186 (29%), Positives = 94/186 (50%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSG--ESKGFAFVAFRSKEVAKRAI 162
++F+G +P+ SE+DLR+L E G V+E+ +++D+ +SKG FV F +++ A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 163 DELCS-KDFKGKTIRCSM----SETNN-----RLFIGNVPKSWTEKEFRKVIEDVGPGVD 212
+ L + K G M SE NN +LFIG + K TE + R + G ++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ-IE 135
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG-NTP-TVSWAEPKSTP 270
+++ P SR G AFV + A A + + M A ++G ++P V +A+ +
Sbjct: 136 ECRILRGPDGLSR--GCAFVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPMVVKFADTQKDK 192
Query: 271 DHSAAA 276
+ A
Sbjct: 193 EQKRMA 198
Score = 141 (54.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 39/157 (24%), Positives = 78/157 (49%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKD-PQAPSRNRGFAFVLYYNNACADYS 243
++F+G VP++W+EK+ R++ E G V I +++D Q P +++G FV +Y A +
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 244 RQKMTSANFK-LDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQ 302
+ + N K L G + +P + ++A + + L++ + + T ++ +F
Sbjct: 76 QNALH--NMKVLPGMHHPIQM-KPADSEKNNAV---EDRKLFIGMISKKCTENDIRVMFS 129
Query: 303 RHGEVTKVVTPPGKSG-KRDFGFIHYAERSSALKAIK 338
G++ + G G R F+ + R+ A AIK
Sbjct: 130 SFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIK 166
Score = 78 (32.5 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
L++ +LP+ + L ++F G V KV + + FGF+ Y SA AI+
Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
++I + L+V L R + + +
Sbjct: 463 NGFQIGMKRLKVQLKRSKNDSK 484
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 207 (77.9 bits), Expect = 9.6e-14, P = 9.6e-14
Identities = 64/266 (24%), Positives = 120/266 (45%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRLF---IGNV-PKSWTEKEFRKVIEDVGPGVDTIELIKD 219
+ + KG+ IR S+ + L +GN+ K+ + K + D I K
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
+RGF FV + + A + M D + + A A +
Sbjct: 131 VCDEHGSRGFGFVHFETHEAAQNAISTMNGMLLN-DRKVFVGHFKSRREREVELGARAME 189
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERSSALKAIK 338
+YVKNL + ++L++LF + G++ V SG R FGF+++ + A KA+
Sbjct: 190 FTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVV 249
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ E+ G++L V A+ + ++ E
Sbjct: 250 NMNGREVSGRLLYVGRAQKRVERQNE 275
Score = 119 (46.9 bits), Expect = 0.00057, P = 0.00057
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ +E+ +L A + +++ L D E+ L+DL G++ V +++D DSG S+G
Sbjct: 174 KSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
F FV F E A++A+ + ++ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVNMNGREVSGRLL 261
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 207 (77.9 bits), Expect = 9.7e-14, P = 9.7e-14
Identities = 61/266 (22%), Positives = 120/266 (45%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L P G++ + + +D + S G+A++ F+ A+ A+D
Sbjct: 11 ASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRLF---IGNV-PKSWTEKEFRKVIEDVGPGVDTIELIKD 219
+ + KG+ IR S+ + L +GN+ K+ E K + D I K
Sbjct: 71 TMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKV 130
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
+ ++G+ FV + A+ + + M D + K A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAANRAIETMNGMLLN-DRKVFVGHFKSRKEREAEMGAKAVE 189
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIK 338
+Y+KN E+ +++LK +F G+ V + G+ R FGF+++ A +A+
Sbjct: 190 FTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVT 249
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ E++G+VL V A+ + ++ E
Sbjct: 250 EMNGKELNGRVLYVGRAQKRLERQGE 275
Score = 125 (49.1 bits), Expect = 0.00013, P = 0.00013
Identities = 49/191 (25%), Positives = 92/191 (48%)
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
++I N + ++ + + + G + ++ ++ D + R+RGF FV + N+ A R+
Sbjct: 193 VYIKNFGEDIDSEKLKNIFTEFGKTL-SVCVMTDERG--RSRGFGFVNFVNHGDA---RR 246
Query: 246 KMTSANFK-LDGNTPTVSWAEPK-STPDHSAAAASQVKA----------LYVKNLPENTT 293
+T N K L+G V A+ + Q+K LYVKNL ++
Sbjct: 247 AVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSID 306
Query: 294 TKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLE 351
++L++ F +G +T KV+T G S R FGF+ ++ A KA+ + + + L
Sbjct: 307 DEKLRKEFAPYGTITSAKVMTDGGHS--RGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 364
Query: 352 VALARPQTNKR 362
VALA+ + ++
Sbjct: 365 VALAQRKEERK 375
>UNIPROTKB|E2R8F6 [details] [associations]
symbol:CELF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
OMA:PTLYNQS EMBL:AAEX03011483 ProteinModelPortal:E2R8F6
Ensembl:ENSCAFT00000013438 Uniprot:E2R8F6
Length = 513
Score = 172 (65.6 bits), Expect = 9.8e-14, Sum P(2) = 9.8e-14
Identities = 55/186 (29%), Positives = 94/186 (50%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSG--ESKGFAFVAFRSKEVAKRAI 162
++F+G +P+ SE+DLR+L E G V+E+ +++D+ +SKG FV F +++ A A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 163 DELCS-KDFKGKTIRCSM----SETNN-----RLFIGNVPKSWTEKEFRKVIEDVGPGVD 212
+ L + K G M SE NN +LFIG + K TE + R + G ++
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ-IE 162
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG-NTP-TVSWAEPKSTP 270
+++ P SR G AFV + A A + + M A ++G ++P V +A+ +
Sbjct: 163 ECRILRGPDGLSR--GCAFVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPMVVKFADTQKDK 219
Query: 271 DHSAAA 276
+ A
Sbjct: 220 EQKRMA 225
Score = 141 (54.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 39/157 (24%), Positives = 78/157 (49%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKD-PQAPSRNRGFAFVLYYNNACADYS 243
++F+G VP++W+EK+ R++ E G V I +++D Q P +++G FV +Y A +
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 102
Query: 244 RQKMTSANFK-LDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQ 302
+ + N K L G + +P + ++A + + L++ + + T ++ +F
Sbjct: 103 QNALH--NMKVLPGMHHPIQM-KPADSEKNNAV---EDRKLFIGMISKKCTENDIRVMFS 156
Query: 303 RHGEVTKVVTPPGKSG-KRDFGFIHYAERSSALKAIK 338
G++ + G G R F+ + R+ A AIK
Sbjct: 157 SFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIK 193
Score = 78 (32.5 bits), Expect = 9.8e-14, Sum P(2) = 9.8e-14
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
L++ +LP+ + L ++F G V KV + + FGF+ Y SA AI+
Sbjct: 430 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 489
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
++I + L+V L R + + +
Sbjct: 490 NGFQIGMKRLKVQLKRSKNDSK 511
>UNIPROTKB|G5EA30 [details] [associations]
symbol:CELF1 "CUG triplet repeat, RNA binding protein 1,
isoform CRA_c" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471064 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090559 UniGene:Hs.595333
HGNC:HGNC:2549 ChiTaRS:CELF1 OMA:PTLYNQS ProteinModelPortal:G5EA30
SMR:G5EA30 PRIDE:G5EA30 Ensembl:ENST00000531165 ArrayExpress:G5EA30
Bgee:G5EA30 Uniprot:G5EA30
Length = 514
Score = 172 (65.6 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 55/186 (29%), Positives = 94/186 (50%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSG--ESKGFAFVAFRSKEVAKRAI 162
++F+G +P+ SE+DLR+L E G V+E+ +++D+ +SKG FV F +++ A A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 163 DELCS-KDFKGKTIRCSM----SETNN-----RLFIGNVPKSWTEKEFRKVIEDVGPGVD 212
+ L + K G M SE NN +LFIG + K TE + R + G ++
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ-IE 162
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG-NTP-TVSWAEPKSTP 270
+++ P SR G AFV + A A + + M A ++G ++P V +A+ +
Sbjct: 163 ECRILRGPDGLSR--GCAFVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPMVVKFADTQKDK 219
Query: 271 DHSAAA 276
+ A
Sbjct: 220 EQKRMA 225
Score = 141 (54.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 39/157 (24%), Positives = 78/157 (49%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKD-PQAPSRNRGFAFVLYYNNACADYS 243
++F+G VP++W+EK+ R++ E G V I +++D Q P +++G FV +Y A +
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 102
Query: 244 RQKMTSANFK-LDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQ 302
+ + N K L G + +P + ++A + + L++ + + T ++ +F
Sbjct: 103 QNALH--NMKVLPGMHHPIQM-KPADSEKNNAV---EDRKLFIGMISKKCTENDIRVMFS 156
Query: 303 RHGEVTKVVTPPGKSG-KRDFGFIHYAERSSALKAIK 338
G++ + G G R F+ + R+ A AIK
Sbjct: 157 SFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIK 193
Score = 78 (32.5 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
L++ +LP+ + L ++F G V KV + + FGF+ Y SA AI+
Sbjct: 431 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 490
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
++I + L+V L R + + +
Sbjct: 491 NGFQIGMKRLKVQLKRSKNDSK 512
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 208 (78.3 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 67/270 (24%), Positives = 115/270 (42%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + +R
Sbjct: 39 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGER 98
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRLFI---GNV-PKSWTEKEFRKVIEDVGPGVDTIEL 216
A+DEL KGK R S+ + L GNV K+ K + D I
Sbjct: 99 ALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 158
Query: 217 IKDPQAP-SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
K Q ++G+ FV +Y A A + K + D K
Sbjct: 159 CKVAQDEFGVSKGYGFV-HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 217
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
+ +Y+KN+ ++ ++LF++ GE+T GK R FGF++++ SA
Sbjct: 218 MKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQ 277
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+++ E+ Q L V A+ + + E
Sbjct: 278 AAVEEMNDKEVRSQKLYVGRAQKKHEREEE 307
Score = 119 (46.9 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 30/118 (25%), Positives = 60/118 (50%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + ++I + + +E+ R L E GE+ L +D + G+S+GF
Sbjct: 208 KKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFG 266
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWT-EKEFRKVIE 205
FV F + E A+ A++E+ K+ + + +L++G K E+E RK E
Sbjct: 267 FVNFSTHESAQAAVEEMNDKEVRSQ-----------KLYVGRAQKKHEREEELRKQYE 313
Score = 88 (36.0 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 34/118 (28%), Positives = 58/118 (49%)
Query: 247 MTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGE 306
+TSA D T V A P+S SA ++ KA + P K+ +E ++ E
Sbjct: 352 ITSAKVMRD--TAPVETATPESETKESANKENE-KAAEGEKEPA-AEEKEKEE--KKEAE 405
Query: 307 VTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
P GKS + FGF+ ++ A KA+ + + ++G+ L VALA+ + +R++
Sbjct: 406 QKPEKKPLGKS--KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 461
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 198 (74.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 50/155 (32%), Positives = 81/155 (52%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+GG+ + + EDL GEV + + D+ +G S+GFAFV F + E K A+
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAA 89
Query: 165 LCSKDFKGKTIRC--SMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
+ KGK++ + S N ++F+G +P ++E++ R E G VD IE D Q
Sbjct: 90 R-EQTIKGKSVEVKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGK-VDDIEWPFDKQT 147
Query: 223 PSRNRGFAFVLYYNNACADY--SRQKMTSANFKLD 255
+R R FAF+++ AD S+ K T + D
Sbjct: 148 KAR-RNFAFIVFEEEESADKASSQTKQTFGTRECD 181
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 165 (63.1 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 56/188 (29%), Positives = 101/188 (53%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++++LR L IGEV L++DK +G S G+ FV + + + A+RAI+
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAIN 79
Query: 164 ELCSKDFKGKTIRCSM----SET--NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S SET + L+I +P++ T+K+ + G +++ L+
Sbjct: 80 TLNGLRLQSKTIKVSFARPSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLV 139
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNT-P-TVSWAEPKSTPDHSA 274
QA +RG AF+ + + A+ + + S N K G++ P TV +A + P+ S
Sbjct: 140 D--QATGLSRGVAFIRFDKRSEAE---EAIASFNGHKPPGSSEPITVKFA---ANPNQSK 191
Query: 275 --AAASQV 280
A SQ+
Sbjct: 192 NMALLSQI 199
Score = 149 (57.5 bits), Expect = 8.5e-08, P = 8.5e-08
Identities = 52/199 (26%), Positives = 86/199 (43%)
Query: 168 KDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNR 227
+D R + TN L + +P++ T+ E R + +G V++ +LI+D A +
Sbjct: 6 EDHMDDVCRDDIGRTN--LIVNYLPQNMTQDELRSLFSSIGE-VESAKLIRDKVA-GHSL 61
Query: 228 GFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKN 287
G+ FV Y N D R T +L T VS+A P S A LY+
Sbjct: 62 GYGFVNYLN--AKDAERAINTLNGLRLQSKTIKVSFARPSSETIKDAN-------LYISG 112
Query: 288 LPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEI 345
LP T K ++++F G + ++V+ R FI + +RS A +AI ++
Sbjct: 113 LPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKP 172
Query: 346 DGQVLEVAL---ARPQTNK 361
G + + A P +K
Sbjct: 173 PGSSEPITVKFAANPNQSK 191
Score = 75 (31.5 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 22/90 (24%), Positives = 42/90 (46%)
Query: 274 AAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERS 331
A++AS +++ NL ++ L ++F G VT KV+ + + FGF+
Sbjct: 237 ASSASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYE 296
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNK 361
A AI Y + + L+V+ +++K
Sbjct: 297 EAAMAIASLNGYRLGDKTLQVSFKTSKSHK 326
>MGI|MGI:1342295 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IMP]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0042835 "BRE binding" evidence=ISO] [GO:0043484 "regulation of
RNA splicing" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1342295
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
EMBL:AL672241 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 ChiTaRS:CELF1 GO:GO:0042835 GO:GO:0006376
EMBL:AJ007987 EMBL:AF267535 EMBL:AK135030 EMBL:AK143698
EMBL:AK014492 EMBL:AK156725 EMBL:BC021393 EMBL:AF314172
EMBL:AB050499 EMBL:X61451 IPI:IPI00123205 IPI:IPI00229237
IPI:IPI00229238 IPI:IPI00395213 PIR:S16865 RefSeq:NP_001231820.1
RefSeq:NP_001231832.1 RefSeq:NP_059064.2 RefSeq:NP_941955.1
UniGene:Mm.29495 UniGene:Mm.490161 ProteinModelPortal:P28659
SMR:P28659 STRING:P28659 PhosphoSite:P28659 PaxDb:P28659
PRIDE:P28659 Ensembl:ENSMUST00000005643 Ensembl:ENSMUST00000068726
Ensembl:ENSMUST00000068747 Ensembl:ENSMUST00000111448
Ensembl:ENSMUST00000111449 Ensembl:ENSMUST00000111451
Ensembl:ENSMUST00000111452 Ensembl:ENSMUST00000111455
Ensembl:ENSMUST00000177642 GeneID:13046 KEGG:mmu:13046
UCSC:uc008ktx.1 GeneTree:ENSGT00560000076837 InParanoid:P28659
OMA:PTLYNQS NextBio:282946 Bgee:P28659 CleanEx:MM_CUGBP1
Genevestigator:P28659 GermOnline:ENSMUSG00000005506 GO:GO:0031369
Uniprot:P28659
Length = 486
Score = 169 (64.5 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 54/186 (29%), Positives = 93/186 (50%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSG--ESKGFAFVAFRSKEVAKRAI 162
++F+G +P+ SE+DLR+L E G V+E+ +++D+ +SKG FV F +++ A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 163 DELCS-KDFKGKTIRCSM----SETNN-----RLFIGNVPKSWTEKEFRKVIEDVGPGVD 212
+ L + K G M SE NN +LFIG + K TE + R + G ++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ-IE 135
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG-NTP-TVSWAEPKSTP 270
+++ P SR G AFV + A + + M A ++G ++P V +A+ +
Sbjct: 136 ECRILRGPDGLSR--GCAFVTFTTRTMAQTAIKAMHQAQ-TMEGCSSPMVVKFADTQKDK 192
Query: 271 DHSAAA 276
+ A
Sbjct: 193 EQKRMA 198
Score = 142 (55.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 39/157 (24%), Positives = 78/157 (49%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKD-PQAPSRNRGFAFVLYYNNACADYS 243
++F+G VP++W+EK+ R++ E G V I +++D Q P +++G FV +Y A +
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 244 RQKMTSANFK-LDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQ 302
+ + N K L G + +P + ++A + + L++ + + T ++ +F
Sbjct: 76 QNALH--NMKVLPGMHHPIQM-KPADSEKNNAV---EDRKLFIGMISKKCTENDIRVMFS 129
Query: 303 RHGEVTKVVTPPGKSG-KRDFGFIHYAERSSALKAIK 338
G++ + G G R F+ + R+ A AIK
Sbjct: 130 SFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIK 166
Score = 78 (32.5 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
L++ +LP+ + L ++F G V KV + + FGF+ Y SA AI+
Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
++I + L+V L R + + +
Sbjct: 463 NGFQIGMKRLKVQLKRSKNDSK 484
>RGD|1307721 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006376 "mRNA splice
site selection" evidence=IEA;ISO] [GO:0007286 "spermatid
development" evidence=IEA;ISO] [GO:0031369 "translation initiation
factor binding" evidence=IEA;ISO] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IEA;ISO] [GO:0042835
"BRE binding" evidence=IEA;ISO] [GO:0043484 "regulation of RNA
splicing" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307721
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723
GO:GO:0043484 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0042835 GO:GO:0006376 EMBL:BC098012 IPI:IPI00373642
RefSeq:NP_001020592.1 UniGene:Rn.22432 ProteinModelPortal:Q4QQT3
SMR:Q4QQT3 STRING:Q4QQT3 PhosphoSite:Q4QQT3 PRIDE:Q4QQT3
GeneID:362160 KEGG:rno:362160 UCSC:RGD:1307721 InParanoid:Q4QQT3
NextBio:678844 Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 169 (64.5 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 54/186 (29%), Positives = 93/186 (50%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSG--ESKGFAFVAFRSKEVAKRAI 162
++F+G +P+ SE+DLR+L E G V+E+ +++D+ +SKG FV F +++ A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 163 DELCS-KDFKGKTIRCSM----SETNN-----RLFIGNVPKSWTEKEFRKVIEDVGPGVD 212
+ L + K G M SE NN +LFIG + K TE + R + G ++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ-IE 135
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG-NTP-TVSWAEPKSTP 270
+++ P SR G AFV + A + + M A ++G ++P V +A+ +
Sbjct: 136 ECRILRGPDGLSR--GCAFVTFTTRTMAQTAIKAMHQAQ-TMEGCSSPMVVKFADTQKDK 192
Query: 271 DHSAAA 276
+ A
Sbjct: 193 EQKRMA 198
Score = 142 (55.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 39/157 (24%), Positives = 78/157 (49%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKD-PQAPSRNRGFAFVLYYNNACADYS 243
++F+G VP++W+EK+ R++ E G V I +++D Q P +++G FV +Y A +
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 244 RQKMTSANFK-LDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQ 302
+ + N K L G + +P + ++A + + L++ + + T ++ +F
Sbjct: 76 QNALH--NMKVLPGMHHPIQM-KPADSEKNNAV---EDRKLFIGMISKKCTENDIRVMFS 129
Query: 303 RHGEVTKVVTPPGKSG-KRDFGFIHYAERSSALKAIK 338
G++ + G G R F+ + R+ A AIK
Sbjct: 130 SFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIK 166
Score = 78 (32.5 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
L++ +LP+ + L ++F G V KV + + FGF+ Y SA AI+
Sbjct: 404 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 463
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
++I + L+V L R + + +
Sbjct: 464 NGFQIGMKRLKVQLKRSKNDSK 485
>UNIPROTKB|Q4QQT3 [details] [associations]
symbol:Celf1 "CUGBP Elav-like family member 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1307721 GO:GO:0005634
GO:GO:0005737 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
EMBL:BC098012 IPI:IPI00373642 RefSeq:NP_001020592.1
UniGene:Rn.22432 ProteinModelPortal:Q4QQT3 SMR:Q4QQT3 STRING:Q4QQT3
PhosphoSite:Q4QQT3 PRIDE:Q4QQT3 GeneID:362160 KEGG:rno:362160
UCSC:RGD:1307721 InParanoid:Q4QQT3 NextBio:678844
Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 169 (64.5 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 54/186 (29%), Positives = 93/186 (50%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSG--ESKGFAFVAFRSKEVAKRAI 162
++F+G +P+ SE+DLR+L E G V+E+ +++D+ +SKG FV F +++ A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 163 DELCS-KDFKGKTIRCSM----SETNN-----RLFIGNVPKSWTEKEFRKVIEDVGPGVD 212
+ L + K G M SE NN +LFIG + K TE + R + G ++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ-IE 135
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG-NTP-TVSWAEPKSTP 270
+++ P SR G AFV + A + + M A ++G ++P V +A+ +
Sbjct: 136 ECRILRGPDGLSR--GCAFVTFTTRTMAQTAIKAMHQAQ-TMEGCSSPMVVKFADTQKDK 192
Query: 271 DHSAAA 276
+ A
Sbjct: 193 EQKRMA 198
Score = 142 (55.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 39/157 (24%), Positives = 78/157 (49%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKD-PQAPSRNRGFAFVLYYNNACADYS 243
++F+G VP++W+EK+ R++ E G V I +++D Q P +++G FV +Y A +
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 244 RQKMTSANFK-LDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQ 302
+ + N K L G + +P + ++A + + L++ + + T ++ +F
Sbjct: 76 QNALH--NMKVLPGMHHPIQM-KPADSEKNNAV---EDRKLFIGMISKKCTENDIRVMFS 129
Query: 303 RHGEVTKVVTPPGKSG-KRDFGFIHYAERSSALKAIK 338
G++ + G G R F+ + R+ A AIK
Sbjct: 130 SFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIK 166
Score = 78 (32.5 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
L++ +LP+ + L ++F G V KV + + FGF+ Y SA AI+
Sbjct: 404 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 463
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
++I + L+V L R + + +
Sbjct: 464 NGFQIGMKRLKVQLKRSKNDSK 485
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 192 (72.6 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 74/287 (25%), Positives = 132/287 (45%)
Query: 116 SEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
+E++L+++ E + E+ LV G+SKG A++ F+S+ A++ ++E + G+++
Sbjct: 407 TEDELKEVFE---DAMEIRLVSQ--DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 461
Query: 176 RCSMS-ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV--DTIE-------LIKDPQAP-S 224
+ E R +W+ + V+ ++ +T+E IK PQ P
Sbjct: 462 SLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVFEKATFIKVPQNPHG 521
Query: 225 RNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAEPKSTPDHSAAAASQVKAL 283
+ +G+AF+ + A + +++ + S N +++G T + S S K L
Sbjct: 522 KPKGYAFIEF---ASFEDAKEALNSCNKMEIEGRTIRLELQGSNSRSQPS-------KTL 571
Query: 284 YVKNLPENTTTKQLKELFQRHGEV-TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT-E 341
+VK L E+TT + LKE F+ G V ++VT + FGF+ + A KA K+ E
Sbjct: 572 FVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAME 628
Query: 342 KYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAG 388
EIDG + + A+P+ G G G G G F G
Sbjct: 629 DGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGG 675
Score = 178 (67.7 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 73/344 (21%), Positives = 152/344 (44%)
Query: 36 VGRDGNVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQ 95
V + + ++ DED+E + + ++D+ A + K+ + ++ E Q
Sbjct: 239 VAEEEDDEEEDEDDEDEDDEEEDDEDDDEEEEEEEPVKAAPGKRKKEMTKQKEAPEAKKQ 298
Query: 96 LL--ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFR 153
+ + P +FIG L + S +L+ + ++ +V D +G ++ F +V F
Sbjct: 299 KVEGSEPTTPFNLFIGNLNPNKSVNELKFAISELFAKNDLAVV-DVRTGTNRKFGYVDFE 357
Query: 154 SKEVAKRAIDELCSKDFKGKTIRCSMSETNNR--------LFIGNVPKSWTEKEFRKVIE 205
S E ++A++ K F G I+ + + L N+ + TE E ++V E
Sbjct: 358 SAEDLEKALELTGLKVF-GNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFE 416
Query: 206 DVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAE 265
D I L+ +++G A++ + + A A+ + ++ A ++DG + ++ +
Sbjct: 417 DAME----IRLVSQD---GKSKGIAYIEFKSEADAEKNLEEKQGA--EIDGRSVSLYYTG 467
Query: 266 PKSTPDHSAAAAS----QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-R 320
K S + K L + NL + T + L+E+F++ T + P GK +
Sbjct: 468 EKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVFEK---ATFIKVPQNPHGKPK 524
Query: 321 DFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ FI +A A +A+ K EI+G+ + + L +N R++
Sbjct: 525 GYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQG--SNSRSQ 566
Score = 144 (55.7 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 83/343 (24%), Positives = 149/343 (43%)
Query: 39 DGNVKQNDEDE-EYDAETSK----EDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKH 93
D + ++DE+E E++ K +P A S +D EDED E+E +
Sbjct: 156 DSDEDEDDEEEDEFEPPIVKGVKPAKAAPAAPASEDEEDD--EDEDDEEDDDEEEEDDSE 213
Query: 94 DQLLALPP-HGSEVFIGGLP---------KDASEEDLRDLCEPIGEVFEVGLVKDKDSGE 143
++++ + G + +P +D EED D E E E D++ E
Sbjct: 214 EEVMEITTAKGKKTPAKVVPMKAKSVAEEEDDEEEDEDDEDEDDEE--EDDEDDDEEEEE 271
Query: 144 SKGF-AFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRK 202
+ A R KE+ K+ E + + K + + S T LFIGN+ + + E +
Sbjct: 272 EEPVKAAPGKRKKEMTKQK--E--APEAKKQKVEGSEPTTPFNLFIGNLNPNKSVNELKF 327
Query: 203 VIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVS 262
I ++ D + D + + NR F +V + + A+ + + K+ GN +
Sbjct: 328 AISELFAKNDLA--VVDVRTGT-NRKFGYVDFES---AEDLEKALELTGLKVFGNE--IK 379
Query: 263 WAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDF 322
+PK AA + L KNL N T +LKE+F+ E+ ++V+ GKS +
Sbjct: 380 LEKPKGRDSKKVRAA---RTLLAKNLSFNITEDELKEVFEDAMEI-RLVSQDGKS--KGI 433
Query: 323 GFIHYAERSSALKAIKDTEKYEIDGQVLEVALA--RPQTNKRT 363
+I + + A K +++ + EIDG+ + + + Q +RT
Sbjct: 434 AYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERT 476
Score = 110 (43.8 bits), Expect = 0.00037, Sum P(3) = 0.00037
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+F+ GL +D +EE L++ E G V +V D+++G SKGF FV F S+E AK A + +
Sbjct: 571 LFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 627
Query: 166 CSKDFKGKTI 175
+ G +
Sbjct: 628 EDGEIDGNKV 637
Score = 57 (25.1 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 63 GA-NGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPP 101
GA NG + ED+ EDED+ S+++++ ++ PP
Sbjct: 133 GAKNGKNAKKEDSDEDEDEEDEDDSDEDEDDEEEDEFEPP 172
Score = 48 (22.0 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 37 GRDGNVKQNDEDE-EYDAETSKEDQSPGANGSHIN--TEDAVEDEDKRTASISEDEKEKH 93
G++ + +DEDE E D + S ED+ + + A SEDE++
Sbjct: 137 GKNAKKEDSDEDEDEEDEDDSDEDEDDEEEDEFEPPIVKGVKPAKAAPAAPASEDEEDDE 196
Query: 94 DQ 95
D+
Sbjct: 197 DE 198
Score = 38 (18.4 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 43 KQNDEDEEYDAETSKEDQSPG 63
K+ +ED E + + ED S G
Sbjct: 22 KEVEEDSEDEEMSEDEDDSSG 42
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 169 (64.5 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 55/190 (28%), Positives = 91/190 (47%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+TN L + +P++ ++ E R + +G V++ +LI+D A + G+ FV Y N
Sbjct: 32 SKTN--LIVNYLPQNMSQDELRSLFSSIGE-VESAKLIRDKVA-GHSLGYGFVNYLNPN- 86
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
D R T +L T VS+A P S S A+ LY+ LP+ T K ++E
Sbjct: 87 -DAERAISTLNGLRLQSKTIKVSYARPSSD---SIKDAN----LYISGLPKTMTQKDVEE 138
Query: 300 LFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVAL--- 354
+F R+G + ++V+ R FI + +R+ A AIKD + G ++ +
Sbjct: 139 MFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQKPPGAAEQMTVKFA 198
Query: 355 ARPQTNKRTE 364
A P K T+
Sbjct: 199 ASPNQVKNTQ 208
Score = 168 (64.2 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 43/144 (29%), Positives = 78/144 (54%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ S+++LR L IGEV L++DK +G S G+ FV + + A+RAI
Sbjct: 34 TNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIS 93
Query: 164 ELCSKDFKGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L+I +PK+ T+K+ ++ G +++ L+
Sbjct: 94 TLNGLRLQSKTIKVSYARPSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLV 153
Query: 218 KDPQAPSRNRGFAFVLYYNNACAD 241
QA +RG AF+ + A A+
Sbjct: 154 D--QASGLSRGVAFIRFDKRAEAE 175
Score = 96 (38.9 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ ++I GLPK +++D+ ++ G + ++ D+ SG S+G AF+ F + A+ AI
Sbjct: 120 ANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIK 179
Query: 164 EL 165
+L
Sbjct: 180 DL 181
Score = 70 (29.7 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 19/81 (23%), Positives = 38/81 (46%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
+++ NL ++ L ++F G VT KV+ + + FGF+ A AI
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 341 EKYEIDGQVLEVALARPQTNK 361
Y + ++L+V+ +++K
Sbjct: 320 NGYRLGDKILQVSFKTSKSHK 340
>UNIPROTKB|D6R9M7 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00967035
ProteinModelPortal:D6R9M7 SMR:D6R9M7 Ensembl:ENST00000505414
HOGENOM:HOG000206189 ArrayExpress:D6R9M7 Bgee:D6R9M7 Uniprot:D6R9M7
Length = 159
Score = 179 (68.1 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 37/94 (39%), Positives = 60/94 (63%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVP 192
RA+ EL + + + G+ + S N RLFIG +P
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIP 159
>UNIPROTKB|H0Y623 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:HSAYLNP
EMBL:AL589765 HGNC:HGNC:11967 ProteinModelPortal:H0Y623
PRIDE:H0Y623 Ensembl:ENST00000420342 Bgee:H0Y623 Uniprot:H0Y623
Length = 466
Score = 156 (60.0 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
Identities = 40/135 (29%), Positives = 75/135 (55%)
Query: 111 LPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCS-KD 169
+P+ E+DL+ + E G +FE+ ++KDK +G KG AF+ + +++ A +A L K
Sbjct: 16 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 75
Query: 170 FKG--KTIRCSMSETNNR----LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
G + I+ +++ +R LF+G + K T+++ RK+ E G +D +++ P
Sbjct: 76 LPGMNRPIQVKPADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDECTVLRGPDGT 134
Query: 224 SRNRGFAFVLYYNNA 238
S+ G AFV + +A
Sbjct: 135 SK--GCAFVKFQTHA 147
Score = 109 (43.4 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+G L K ++ED+R + EP G + E +++ D G SKG AFV F++ A+ AI+
Sbjct: 97 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 155
Query: 165 LCS 167
L S
Sbjct: 156 LHS 158
Score = 88 (36.0 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
+++ +LP+ T ++ ++F G V KV + + FGF+ + +SA AI+
Sbjct: 383 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 442
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
++I + L+V L RP+ R
Sbjct: 443 NGFQIGMKRLKVQLKRPKDANR 464
Score = 59 (25.8 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
+FI ++P+ +T+ E ++ G V + ++ D +A ++++ F FV + N A A + Q
Sbjct: 383 IFIYHLPQEFTDSEILQMFVPFGH-VISAKVFVD-RATNQSKCFGFVSFDNPASAQAAIQ 440
Query: 246 KMTSANFKLDGNTPTVSWAEPK 267
M F++ V PK
Sbjct: 441 AMNG--FQIGMKRLKVQLKRPK 460
>TAIR|locus:2122990 [details] [associations]
symbol:AT4G19610 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14787
OMA:VFREKNV IPI:IPI00517416 RefSeq:NP_193696.3 UniGene:At.50354
ProteinModelPortal:F4JT92 SMR:F4JT92 PRIDE:F4JT92
EnsemblPlants:AT4G19610.1 GeneID:827703 KEGG:ath:AT4G19610
Uniprot:F4JT92
Length = 816
Score = 155 (59.6 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
Identities = 49/177 (27%), Positives = 86/177 (48%)
Query: 39 DGNVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLA 98
DG + + +D + D G G + DA+E E ++++ K D +L
Sbjct: 236 DGKAETDGQDADIRYFPIDGDVEAGGVGKD-DDGDAMEVEGD--GKVAQESKAVSDDVLD 292
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+F+ LP A+EE+L + G++ EV LV DK++ S+G A++ + E A
Sbjct: 293 T----GRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECA 348
Query: 159 KRAIDELCSKDFKGKTIR---CSMSETNNRLF--IGNVPKSWTEK--EFRKVIEDVG 208
RA++EL + F+G+ + ET+++ N+PK++ +K E RK E G
Sbjct: 349 ARAMEELDNSSFQGRLLHILPAKHRETSDKQVNDTSNLPKTFKQKREEQRKASEAGG 405
Score = 116 (45.9 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 28/99 (28%), Positives = 53/99 (53%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
S + + LPK E+ LRD GE+ + L++ D G+S+ F F+ FRS + A++AI
Sbjct: 2 SRICVKNLPKHVKEDQLRDHFSQKGEITDAKLMRSND-GKSRQFGFIGFRSAQEAQQAI- 59
Query: 164 ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRK 202
+ + + G ++ + E +++ N P+ W+ +K
Sbjct: 60 KYFNNTYLGTSL--IIVEIAHKVGDENAPRPWSRLSHKK 96
Score = 100 (40.3 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 35/129 (27%), Positives = 64/129 (49%)
Query: 171 KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFA 230
+ K + + +T RLF+ N+P + TE+E + G + + L+ D + R+RG A
Sbjct: 282 ESKAVSDDVLDTG-RLFVRNLPYTATEEELMEHFSTFGK-ISEVHLVLDKET-KRSRGIA 338
Query: 231 FVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPE 290
++LY CA + +++ +++F+ G + A+ + T D QV NLP+
Sbjct: 339 YILYLIPECAARAMEELDNSSFQ--GRLLHILPAKHRETSD------KQVND--TSNLPK 388
Query: 291 NTTTKQLKE 299
T KQ +E
Sbjct: 389 --TFKQKRE 395
Score = 96 (38.9 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
Identities = 31/91 (34%), Positives = 46/91 (50%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI----- 337
L VKNLP +T K+L ++F + G + K++ PP K+ F+ AE +ALK +
Sbjct: 490 LLVKNLPFASTEKELAQMFGKFGSLDKIILPPTKTMALAV-FLEPAEARAALKGMAYKRY 548
Query: 338 KDTEKY-E-IDGQVLEVALARPQTNKRTEGV 366
KD Y E G +LE P TN+ +
Sbjct: 549 KDAPLYLEWAPGNILEPKNL-PDTNEERSDI 578
Score = 88 (36.0 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFG--FIHYAERSSALKAIKDT 340
L+V+NLP T ++L E F G++++V K KR G +I Y A +A+++
Sbjct: 296 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEEL 355
Query: 341 EKYEIDGQVLEVALAR 356
+ G++L + A+
Sbjct: 356 DNSSFQGRLLHILPAK 371
Score = 85 (35.0 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 38/164 (23%), Positives = 75/164 (45%)
Query: 197 EKEFRKVIEDVGPGVDTIELIKDPQAPSR-NRGFAFVLYYNNACADYSRQKMTSANFKLD 255
+K F K+++ G + ++ +IK + + G+ FV + + A + + LD
Sbjct: 619 KKHFTKLVKQ-GK-ILSVTIIKHKKNEKYLSSGYGFVEFDSVETATSVYRDLQGT--VLD 674
Query: 256 GNTPTVSWAEPKSTPDHSAAAASQVKA---LYVKNLPENTTTKQLKELFQRHGEVTKVVT 312
G+ + + E K + D +++ K L+VKN+ T ++L++LF G++ +
Sbjct: 675 GHALILRFCENKRS-DKVGKDSNKDKPCTKLHVKNIAFEATKRELRQLFSPFGQIKSMRL 733
Query: 313 PPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQ--VLEVA 353
P G+ + F+ + + AL A K G+ VLE A
Sbjct: 734 PKKNIGQYAGYAFVEFVTKQEALNAKKALASTHFYGRHLVLEWA 777
Score = 71 (30.1 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 25/96 (26%), Positives = 44/96 (45%)
Query: 278 SQVKALYVKNLPENTTTKQLKELFQR---HGEVTKVVTPPGKSGKR----DFGFIHYAER 330
++ L VKNL TT + LK+ F + G++ V K ++ +GF+ +
Sbjct: 599 TESNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSV 658
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGV 366
+A +D + +DG L + R NKR++ V
Sbjct: 659 ETATSVYRDLQGTVLDGHAL---ILRFCENKRSDKV 691
Score = 46 (21.3 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 48 DEEYDAETSKED--QSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSE 105
D EY K++ S N S ++ED D+D + + +D ++ P G +
Sbjct: 203 DMEYFKSRIKKNLSDSESDNESEDSSEDEAGDDDGKAETDGQDADIRY-----FPIDG-D 256
Query: 106 VFIGGLPKD 114
V GG+ KD
Sbjct: 257 VEAGGVGKD 265
Score = 44 (20.5 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 42 VKQNDEDEEYD--AETSKEDQSPGANGSHINTEDAVEDEDKRTASISED 88
+K+N D E D +E S ED++ +G E +D D R I D
Sbjct: 211 IKKNLSDSESDNESEDSSEDEAGDDDGK---AETDGQDADIRYFPIDGD 256
Score = 43 (20.2 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 14/67 (20%), Positives = 28/67 (41%)
Query: 325 IHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYG 384
+ + E + K KD+ K + ++ +A T + ++S + LP G
Sbjct: 680 LRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIG 739
Query: 385 SFAGTAY 391
+AG A+
Sbjct: 740 QYAGYAF 746
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 201 (75.8 bits), Expect = 4.6e-13, P = 4.6e-13
Identities = 77/293 (26%), Positives = 140/293 (47%)
Query: 111 LPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF 170
LP ++++L+++ E + E+ LV KD G+SKG A++ F+++ A++ ++E +
Sbjct: 322 LPYKVTQDELKEVFE---DAVEIRLVS-KD-GKSKGIAYIEFKTEADAEKTLEEKQGTEI 376
Query: 171 -----KGKTI------RCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKD 219
KG++ + S + L + N+ S TE+ ++V E IK
Sbjct: 377 DYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATH-------IKV 429
Query: 220 PQAPS-RNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPKSTPDHSAAAA 277
PQ + +++G+AF+ + A + +++ + S N + ++G + P+ +P+ A +
Sbjct: 430 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN---ARS 483
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEV-TKVVTPPGKSGKRDFGFIHYAERSSALKA 336
K L+VK L E+TT + LKE F G + ++VT + FGF+ + A KA
Sbjct: 484 QPSKTLFVKGLSEDTTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNSEEDA-KA 540
Query: 337 IKDT-EKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAG 388
K+ E EIDG + + A+P+ G G G G G F G
Sbjct: 541 AKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGG 593
Score = 180 (68.4 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 81/343 (23%), Positives = 151/343 (44%)
Query: 39 DGNVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLA 98
D +DE+EE + E +E++ P ++A K A + K ++
Sbjct: 171 DDEDDHDDEEEEEEEEEEEEEEEP--------VKEAPGKRKKEMAKQKAAPEAKKQKVEG 222
Query: 99 LPPHGS-EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
P S +F+G L + S +L+ + ++ +V D G S+ F +V F S E
Sbjct: 223 TEPTTSFNLFVGNLNFNKSAPELKTGISDLFAKNDLAVV-DVRIGVSRKFGYVDFESAED 281
Query: 158 AKRAIDELCSKDFKGKTIRC-------SMSETNNRLFIG-NVPKSWTEKEFRKVIEDVGP 209
++A++ K F G I+ S + + R + N+P T+ E ++V ED
Sbjct: 282 LEKALELTGLKVF-GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA-- 338
Query: 210 GVDTIELI-KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
V+ I L+ KD +++G A++ + A A+ + ++ G E
Sbjct: 339 -VE-IRLVSKD----GKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTG--------EKGQ 384
Query: 269 TPDHSAAAAS----QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFG 323
+ DH S + K L + NL + T + L+E+F++ T + P ++GK + +
Sbjct: 385 SQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATHIKVPQNQNGKSKGYA 441
Query: 324 FIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ--TNKRTE 364
FI +A A +A+ K EI+G+ + + L P+ N R++
Sbjct: 442 FIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQ 484
Score = 153 (58.9 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 59/244 (24%), Positives = 111/244 (45%)
Query: 42 VKQNDEDEEYDAETSKEDQSPGANGSHINTE-DAVED-EDKRTASIS----EDEKEKH-- 93
+K+ ED SK+ +S G TE DA + E+K+ I + + + H
Sbjct: 331 LKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRG 390
Query: 94 DQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFR 153
+ + + L A+EE L+++ E + V +G+SKG+AF+ F
Sbjct: 391 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATHI----KVPQNQNGKSKGYAFIEFA 446
Query: 154 SKEVAKRAIDELCSKDFKGKTIRCSM----------SETNNRLFIGNVPKSWTEKEFRKV 203
S E AK A++ ++ +G+ IR + S+ + LF+ + + TE+ ++
Sbjct: 447 SFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKES 506
Query: 204 IEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSW 263
+ G ++ D + S ++GF FV + + A +++ M ++DGN T+ W
Sbjct: 507 FD----GSIRARIVTDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDW 559
Query: 264 AEPK 267
A+PK
Sbjct: 560 AKPK 563
Score = 124 (48.7 bits), Expect = 0.00016, P = 0.00016
Identities = 79/333 (23%), Positives = 139/333 (41%)
Query: 41 NVKQNDEDEEYDAETSKEDQ-----SPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQ 95
N ++ D DEE D E KED+ + A G+ T+D +DED E+E+E+ D+
Sbjct: 63 NARKEDSDEE-D-EDDKEDEPAVRKAAAAFGAAPATDDE-DDEDDDDDDDEEEEEEEEDE 119
Query: 96 -------LLALPPHGSEVFIGGLP-------KDASEEDLRDLCEPIGEVFEVGLVKDKDS 141
+ +P G + +P +D EED D E E + D D
Sbjct: 120 DDSEEEPMEIVPAKGKKAPAKAVPVKAKSTAEDEDEEDDDDDDEEEEEEDDDD-EDDHDD 178
Query: 142 GESKGFAFVAFRSKEVAKRA--------IDELCSKDFKGKTIRCSMSETNNRLFIGNVPK 193
E + +E K A + + + K + + + T+ LF+GN+
Sbjct: 179 EEEEEEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTSFNLFVGNLNF 238
Query: 194 SWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK 253
+ + E + I D+ D + D + +R F +V + + A+ + + K
Sbjct: 239 NKSAPELKTGISDLFAKNDLA--VVDVRI-GVSRKFGYVDFES---AEDLEKALELTGLK 292
Query: 254 LDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTP 313
+ GN + +PK A + L KNLP T +LKE+F+ E+ ++V+
Sbjct: 293 VFGNE--IKLEKPKGKDSKKDRDA---RTLLAKNLPYKVTQDELKEVFEDAVEI-RLVSK 346
Query: 314 PGKSGKRDFGFIHYAERSSALKAIKDTEKYEID 346
GKS + +I + + A K +++ + EID
Sbjct: 347 DGKS--KGIAYIEFKTEADAEKTLEEKQGTEID 377
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 201 (75.8 bits), Expect = 4.7e-13, P = 4.7e-13
Identities = 77/293 (26%), Positives = 140/293 (47%)
Query: 111 LPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF 170
LP ++++L+++ E + E+ LV KD G+SKG A++ F+++ A++ ++E +
Sbjct: 327 LPYKVTQDELKEVFE---DAVEIRLVS-KD-GKSKGIAYIEFKTEADAEKTLEEKQGTEI 381
Query: 171 -----KGKTI------RCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKD 219
KG++ + S + L + N+ S TE+ ++V E IK
Sbjct: 382 DYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATH-------IKV 434
Query: 220 PQAPS-RNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPKSTPDHSAAAA 277
PQ + +++G+AF+ + A + +++ + S N + ++G + P+ +P+ A +
Sbjct: 435 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN---ARS 488
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEV-TKVVTPPGKSGKRDFGFIHYAERSSALKA 336
K L+VK L E+TT + LKE F G + ++VT + FGF+ + A KA
Sbjct: 489 QPSKTLFVKGLSEDTTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNSEEDA-KA 545
Query: 337 IKDT-EKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAG 388
K+ E EIDG + + A+P+ G G G G G F G
Sbjct: 546 AKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGG 598
Score = 153 (58.9 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 59/244 (24%), Positives = 111/244 (45%)
Query: 42 VKQNDEDEEYDAETSKEDQSPGANGSHINTE-DAVED-EDKRTASIS----EDEKEKH-- 93
+K+ ED SK+ +S G TE DA + E+K+ I + + + H
Sbjct: 336 LKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRG 395
Query: 94 DQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFR 153
+ + + L A+EE L+++ E + V +G+SKG+AF+ F
Sbjct: 396 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATHI----KVPQNQNGKSKGYAFIEFA 451
Query: 154 SKEVAKRAIDELCSKDFKGKTIRCSM----------SETNNRLFIGNVPKSWTEKEFRKV 203
S E AK A++ ++ +G+ IR + S+ + LF+ + + TE+ ++
Sbjct: 452 SFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKES 511
Query: 204 IEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSW 263
+ G ++ D + S ++GF FV + + A +++ M ++DGN T+ W
Sbjct: 512 FD----GSIRARIVTDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDW 564
Query: 264 AEPK 267
A+PK
Sbjct: 565 AKPK 568
Score = 134 (52.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 64/310 (20%), Positives = 131/310 (42%)
Query: 37 GRDGNVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQL 96
G++ + +DE++E D+E ++D P + A +D+ +D+ E+ ++
Sbjct: 92 GKNARKEDSDEEDEDDSE-EEDDDEPAVRKAAAAFGAAPATDDEDDEDDDDDDDEEEEEE 150
Query: 97 LALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
E + +P + + + E +D D + + R KE
Sbjct: 151 EEDEDDSEEEPMEIVPAKGKKAPAKAVPVKAKSTAEDEDEEDDDDDDEEEEEAPGKRKKE 210
Query: 157 VAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
+AK+ + + K + + + T+ LF+GN+ + + E + I D+ D
Sbjct: 211 MAKQK----AAPEAKKQKVEGTEPTTSFNLFVGNLNFNKSAPELKTGISDLFAKNDLA-- 264
Query: 217 IKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
+ D + +R F +V + + A+ + + K+ GN + +PK
Sbjct: 265 VVDVRI-GVSRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSKKDRD 318
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
A + L KNLP T +LKE+F+ E+ ++V+ GKS + +I + + A K
Sbjct: 319 A---RTLLAKNLPYKVTQDELKEVFEDAVEI-RLVSKDGKS--KGIAYIEFKTEADAEKT 372
Query: 337 IKDTEKYEID 346
+++ + EID
Sbjct: 373 LEEKQGTEID 382
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 201 (75.8 bits), Expect = 4.7e-13, P = 4.7e-13
Identities = 77/293 (26%), Positives = 140/293 (47%)
Query: 111 LPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF 170
LP ++++L+++ E + E+ LV KD G+SKG A++ F+++ A++ ++E +
Sbjct: 327 LPYKVTQDELKEVFE---DAVEIRLVS-KD-GKSKGIAYIEFKTEADAEKTLEEKQGTEI 381
Query: 171 -----KGKTI------RCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKD 219
KG++ + S + L + N+ S TE+ ++V E IK
Sbjct: 382 DYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATH-------IKV 434
Query: 220 PQAPS-RNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPKSTPDHSAAAA 277
PQ + +++G+AF+ + A + +++ + S N + ++G + P+ +P+ A +
Sbjct: 435 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN---ARS 488
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEV-TKVVTPPGKSGKRDFGFIHYAERSSALKA 336
K L+VK L E+TT + LKE F G + ++VT + FGF+ + A KA
Sbjct: 489 QPSKTLFVKGLSEDTTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNSEEDA-KA 545
Query: 337 IKDT-EKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAG 388
K+ E EIDG + + A+P+ G G G G G F G
Sbjct: 546 AKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGG 598
Score = 153 (58.9 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 59/244 (24%), Positives = 111/244 (45%)
Query: 42 VKQNDEDEEYDAETSKEDQSPGANGSHINTE-DAVED-EDKRTASIS----EDEKEKH-- 93
+K+ ED SK+ +S G TE DA + E+K+ I + + + H
Sbjct: 336 LKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRG 395
Query: 94 DQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFR 153
+ + + L A+EE L+++ E + V +G+SKG+AF+ F
Sbjct: 396 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATHI----KVPQNQNGKSKGYAFIEFA 451
Query: 154 SKEVAKRAIDELCSKDFKGKTIRCSM----------SETNNRLFIGNVPKSWTEKEFRKV 203
S E AK A++ ++ +G+ IR + S+ + LF+ + + TE+ ++
Sbjct: 452 SFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKES 511
Query: 204 IEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSW 263
+ G ++ D + S ++GF FV + + A +++ M ++DGN T+ W
Sbjct: 512 FD----GSIRARIVTDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDW 564
Query: 264 AEPK 267
A+PK
Sbjct: 565 AKPK 568
Score = 128 (50.1 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 76/338 (22%), Positives = 141/338 (41%)
Query: 37 GRDGNVKQNDEDEEYDAETSKEDQSPG------ANGSHINTEDAVEDEDKRTASISEDEK 90
G++ + +DE++E D+E ++ P A G+ T+D +DED E+E+
Sbjct: 61 GKNARKEDSDEEDEDDSEEEDDEDEPAVRKAAAAFGAAPATDDE-DDEDDDDDDDEEEEE 119
Query: 91 EKHDQ-------LLALPPHGSEVFIGGLP-------KDASEEDLRDLCEPIGEVFEVGLV 136
E+ D+ + +P G + +P +D EED D E E +
Sbjct: 120 EEEDEDDSEEEPMEIVPAKGKKAPAKAVPVKAKSTAEDEDEEDDDDDDEEEEEEDDDD-E 178
Query: 137 KDKDSGESKGFAFVAFRSKEVAKRA--------IDELCSKDFKGKTIRCSMSETNNRLFI 188
D D E + +E K A + + + K + + + T+ LF+
Sbjct: 179 DDHDDEEEEEEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTSFNLFV 238
Query: 189 GNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMT 248
GN+ + + E + I D+ D + D + +R F +V + + A+ + +
Sbjct: 239 GNLNFNKSAPELKTGISDLFAKNDLA--VVDVRI-GVSRKFGYVDFES---AEDLEKALE 292
Query: 249 SANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT 308
K+ GN + +PK A + L KNLP T +LKE+F+ E+
Sbjct: 293 LTGLKVFGNE--IKLEKPKGKDSKKDRDA---RTLLAKNLPYKVTQDELKEVFEDAVEI- 346
Query: 309 KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEID 346
++V+ GKS + +I + + A K +++ + EID
Sbjct: 347 RLVSKDGKS--KGIAYIEFKTEADAEKTLEEKQGTEID 382
>TAIR|locus:2139340 [details] [associations]
symbol:RBP-DR1 "RNA-binding protein-defense related 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0009626 "plant-type
hypersensitive response" evidence=IMP] [GO:0080151 "positive
regulation of salicylic acid mediated signaling pathway"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0009626
KO:K13207 eggNOG:NOG251494 OMA:SAMESIN HSSP:Q60900 GO:GO:0080151
EMBL:AY084669 EMBL:AK316961 IPI:IPI00541126 RefSeq:NP_567249.1
UniGene:At.28541 ProteinModelPortal:Q8LFS6 SMR:Q8LFS6 STRING:Q8LFS6
PaxDb:Q8LFS6 PRIDE:Q8LFS6 EnsemblPlants:AT4G03110.1 GeneID:828090
KEGG:ath:AT4G03110 TAIR:At4g03110 InParanoid:Q8LFS6
PhylomeDB:Q8LFS6 ProtClustDB:CLSN2689309 Genevestigator:Q8LFS6
Uniprot:Q8LFS6
Length = 441
Score = 158 (60.7 bits), Expect = 5.5e-13, Sum P(2) = 5.5e-13
Identities = 51/194 (26%), Positives = 93/194 (47%)
Query: 83 ASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSG 142
A E+ +EK+++ ++F+G +PK SE L L + V EV ++KDK +
Sbjct: 2 AEAKEENREKNEE-----EESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITR 56
Query: 143 ESKGFAFVAFRSKEVAKRAIDELC--SKDFKG-------KTIRCSMSETNNRLFIGNVPK 193
S+G F+ S+E A + ++ C K G K + ++LF+G +PK
Sbjct: 57 ASRGCCFLLCPSREEADKLVNA-CHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPK 115
Query: 194 SWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK 253
+ +E E + + G + +++++ Q S+ G AF+ Y A S + + K
Sbjct: 116 NVSEAEVQSLFSKYGT-IKDLQILRGAQQTSK--GCAFLKYETKEQA-VSAMESINGKHK 171
Query: 254 LDGNT-P-TVSWAE 265
++G+T P V WA+
Sbjct: 172 MEGSTVPLVVKWAD 185
Score = 119 (46.9 bits), Expect = 0.00035, P = 0.00035
Identities = 24/84 (28%), Positives = 45/84 (53%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
P G+ +FI +P++ +++L + G V + DK +G SK F FV++ S+ A+
Sbjct: 346 PEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQN 405
Query: 161 AIDELCSKDFKGKTIRCSMSETNN 184
AID + + GK ++ + +N
Sbjct: 406 AIDMMNGRHLGGKKLKVQLKRDSN 429
Score = 117 (46.2 bits), Expect = 0.00058, P = 0.00058
Identities = 39/184 (21%), Positives = 87/184 (47%)
Query: 181 ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACA 240
E + +LF+G +PK +E + + ++ VD + +IKD + +RG F+L + A
Sbjct: 15 EESVKLFVGQIPKHMSESQLLTLFQEFAV-VDEVNIIKD-KITRASRGCCFLLCPSREEA 72
Query: 241 DYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK-ALYVKNLPENTTTKQLKE 299
D K+ +A N T+ A ++ +++ L+V LP+N + +++
Sbjct: 73 D----KLVNACH----NKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQS 124
Query: 300 LFQRHGEVTKVVTPPG-KSGKRDFGFIHYAERSSALKAIKDTE-KYEIDGQVLEVALARP 357
LF ++G + + G + + F+ Y + A+ A++ K++++G + + +
Sbjct: 125 LFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWA 184
Query: 358 QTNK 361
T +
Sbjct: 185 DTER 188
Score = 84 (34.6 bits), Expect = 5.5e-13, Sum P(2) = 5.5e-13
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
L++ N+P ++L FQ G V KV + FGF+ Y +++A AI
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 341 EKYEIDGQVLEVALARPQTN 360
+ G+ L+V L R N
Sbjct: 411 NGRHLGGKKLKVQLKRDSNN 430
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 192 (72.6 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 57/225 (25%), Positives = 104/225 (46%)
Query: 48 DEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVF 107
DE++ ETS+ NG E+ + + AS E++ K +F
Sbjct: 3 DEQF-METSENGNEENLNGGEAAGENGAGEGLQIDASKCEEDAGK-------------MF 48
Query: 108 IGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE--- 164
+GGL D S++DL+D GEV + + D ++G S+GF F+ F+ + R + +
Sbjct: 49 VGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQKEH 108
Query: 165 -LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
L + K E ++F+G + TE++ R+ G ++TIEL DP+
Sbjct: 109 RLDGRQIDPKRAMAIKKEPVKKIFVGGLNPETTEEKIREYFGSFGE-IETIELPTDPKT- 166
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANF-KLDGNTPTVSWAEPK 267
S+ RGF F+ + +++ +K+ + + G+ + A+PK
Sbjct: 167 SKRRGFVFITFKE----EFAVKKILEKKYHNVCGSKCEIKIAQPK 207
Score = 149 (57.5 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 50/191 (26%), Positives = 87/191 (45%)
Query: 171 KGKTIRCSMSETN-NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGF 229
+G I S E + ++F+G + ++K+ + G +D IK R+RGF
Sbjct: 31 EGLQIDASKCEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCT--IKMDSNTGRSRGF 88
Query: 230 AFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLP 289
F+L+ + D Q+ +LDG +PK A VK ++V L
Sbjct: 89 GFILFKESDSVDRVLQQK---EHRLDGRQ-----IDPKRA---MAIKKEPVKKIFVGGLN 137
Query: 290 ENTTTKQLKELFQRHGEVTKVVTP--PGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDG 347
TT ++++E F GE+ + P P S +R F FI + E A+K I + + + + G
Sbjct: 138 PETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEF-AVKKILEKKYHNVCG 196
Query: 348 QVLEVALARPQ 358
E+ +A+P+
Sbjct: 197 SKCEIKIAQPK 207
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 164 (62.8 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
Identities = 51/186 (27%), Positives = 98/186 (52%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++E+LR L IGE+ L++DK +G S G+ FV + + + A+RAI+
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 164 ELCSKDFKGKTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L+I +P++ T+K+ + G +++ L+
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSPFGRIINSRVLV 139
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNT-P-TVSWAEPKSTPDHSA 274
Q +RG AF+ + + A+ + +TS N K G++ P TV +A + +
Sbjct: 140 D--QTTGLSRGVAFIRFDKRSEAE---EAITSFNGHKPPGSSEPITVKFAA-NPNQNKNV 193
Query: 275 AAASQV 280
A SQ+
Sbjct: 194 ALLSQL 199
Score = 151 (58.2 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 51/199 (25%), Positives = 87/199 (43%)
Query: 168 KDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNR 227
+D + R + TN L + +P++ T++E R + +G +++ +LI+D A +
Sbjct: 6 EDHMAEDCRDDIGRTN--LIVNYLPQNMTQEELRSLFSSIGE-IESAKLIRDKVA-GHSL 61
Query: 228 GFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKN 287
G+ FV Y D R T +L T VS+A P S A LY+
Sbjct: 62 GYGFVNYVT--AKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDAN-------LYISG 112
Query: 288 LPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEI 345
LP T K ++++F G + ++V+ R FI + +RS A +AI ++
Sbjct: 113 LPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKP 172
Query: 346 DGQVLEVAL---ARPQTNK 361
G + + A P NK
Sbjct: 173 PGSSEPITVKFAANPNQNK 191
Score = 70 (29.7 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSAL 334
AS +++ NL ++ L ++F G VT KV+ + + FGF+ A
Sbjct: 240 ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAS 299
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNK 361
AI Y + ++L+V+ +TNK
Sbjct: 300 MAIASLNGYRLGDKILQVSF---KTNK 323
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 163 (62.4 bits), Expect = 7.4e-13, Sum P(2) = 7.4e-13
Identities = 42/145 (28%), Positives = 79/145 (54%)
Query: 101 PHGSE-----VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSK 155
P+GSE + + LP++ ++E+L+ L IGE+ LV+DK +G+S G+ FV +
Sbjct: 60 PNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEP 119
Query: 156 EVAKRAIDELCSKDFKGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGP 209
+ A++AI+ L + KTI+ S + ++ L++ +PK+ T+KE ++ G
Sbjct: 120 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQFGR 179
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLY 234
+ T ++ D Q +RG F+ +
Sbjct: 180 -IITSRILVD-QVTGVSRGVGFIRF 202
Score = 151 (58.2 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 49/193 (25%), Positives = 91/193 (47%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+TN L + +P++ T++E + + +G +++ +L++D + ++ G+ FV Y
Sbjct: 66 SKTN--LIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYMEPK- 120
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
D + T +L T VS+A P S A LYV LP+ T K+L++
Sbjct: 121 -DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-------LYVSGLPKTMTQKELEQ 172
Query: 300 LFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDG--QVLEVALA 355
LF + G + ++++ R GFI + R A +AIK + G + + V A
Sbjct: 173 LFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFA 232
Query: 356 RPQTNKRTEGVYS 368
+ K ++ + S
Sbjct: 233 NNPSQKSSQALLS 245
Score = 94 (38.1 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++ GLPK ++++L L G + ++ D+ +G S+G F+ F + A+ AI
Sbjct: 154 ANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIK 213
Query: 164 ELCSKDFKGKTIRCSMSETNN 184
L + G T ++ NN
Sbjct: 214 GLNGQKPPGATEPITVKFANN 234
Score = 75 (31.5 bits), Expect = 7.4e-13, Sum P(2) = 7.4e-13
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
++V NL + L ++F G VT KV+ + + FGF+ A AI
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 341 EKYEIDGQVLEVALARPQTNK 361
Y + +VL+V+ +T+K
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
>UNIPROTKB|F1ST15 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0030317 GO:GO:0048026
GeneTree:ENSGT00560000076837 OMA:HSAYLNP GO:GO:0000381
EMBL:CU457723 Ensembl:ENSSSCT00000007252 Uniprot:F1ST15
Length = 465
Score = 154 (59.3 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 40/136 (29%), Positives = 75/136 (55%)
Query: 111 LPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCS-KD 169
+P+ E+DL+ + E G +FE+ ++KDK +G KG AF+ + +++ A +A L K
Sbjct: 15 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 74
Query: 170 FKG--KTIRCSMSETNNR-----LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
G + I+ +++ +R LF+G + K T+++ RK+ E G +D +++ P
Sbjct: 75 LPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDECTVLRGPDG 133
Query: 223 PSRNRGFAFVLYYNNA 238
S+ G AFV + +A
Sbjct: 134 TSK--GCAFVKFQTHA 147
Score = 109 (43.4 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+G L K ++ED+R + EP G + E +++ D G SKG AFV F++ A+ AI+
Sbjct: 97 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 155
Query: 165 LCS 167
L S
Sbjct: 156 LHS 158
Score = 88 (36.0 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
+++ +LP+ T ++ ++F G V KV + + FGF+ + +SA AI+
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
++I + L+V L RP+ R
Sbjct: 442 NGFQIGMKRLKVQLKRPKDANR 463
Score = 59 (25.8 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
+FI ++P+ +T+ E ++ G V + ++ D +A ++++ F FV + N A A + Q
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGH-VISAKVFVD-RATNQSKCFGFVSFDNPASAQAAIQ 439
Query: 246 KMTSANFKLDGNTPTVSWAEPK 267
M F++ V PK
Sbjct: 440 AMNG--FQIGMKRLKVQLKRPK 459
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 201 (75.8 bits), Expect = 8.0e-13, P = 8.0e-13
Identities = 64/258 (24%), Positives = 120/258 (46%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L +D +E L ++ +G V + + +D + +S G+A+V + + A+RA+D
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L + KG+ R S + +F+ N+ KS K G + + +
Sbjct: 76 TLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFG-NILSCK 134
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D S++ GF V Y + A + +K+ + V + P A
Sbjct: 135 VATDEFGKSKSYGF--VHYEDEESAKEAIEKVNGVQL----GSKNV-YVGPFIKKSERAT 187
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALK 335
++ LYVKN P++ T L++LF +GE+T ++ ++ F FI+YA+ SA
Sbjct: 188 NDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRK-FCFINYADAESAKN 246
Query: 336 AIKDTEKYEI--DGQVLE 351
A+ + +I DGQ+ E
Sbjct: 247 AMDNLNGKKITDDGQIDE 264
Score = 125 (49.1 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 48/182 (26%), Positives = 79/182 (43%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID-- 163
+F+ L K + L D G + + D + G+SK + FV + +E AK AI+
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATD-EFGKSKSYGFVHYEDEESAKEAIEKV 164
Query: 164 ---ELCSKD-FKGKTIRCSMSETNN----RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+L SK+ + G I+ S TN+ L++ N P S TE R++ G T
Sbjct: 165 NGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGE--ITSM 222
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTP-TVSWAEPKSTPDHSA 274
++K ++NR F F+ Y + A + + DG T + ++T S
Sbjct: 223 IVK---MDNKNRKFCFINYADAESAKNAMDNLNGKKITDDGQIDETYDPKKEEATASTSG 279
Query: 275 AA 276
AA
Sbjct: 280 AA 281
Score = 115 (45.5 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 26/79 (32%), Positives = 43/79 (54%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G ++I L + LR+L EP G + +++D+ +SKGF FV F S+E A +A+
Sbjct: 449 GVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKE-QSKGFGFVCFASQEEANKAV 507
Query: 163 DELCSKDFKGKTIRCSMSE 181
E+ K GK + ++E
Sbjct: 508 TEMHLKIINGKPLYVGLAE 526
Score = 107 (42.7 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGKRDFGFIHYAERSSALKAIKDTE 341
LY+KNL + L+ELF+ G +T V K + FGF+ +A + A KA+ +
Sbjct: 452 LYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMH 511
Query: 342 KYEIDGQVLEVALARPQTNK 361
I+G+ L V LA + +
Sbjct: 512 LKIINGKPLYVGLAEKREQR 531
Score = 50 (22.7 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 48 DEEYDAETSKEDQSPGANGSHINTEDAVEDE-DKRTASISEDEKEKHD 94
DE YD + KE+ + +G+ T D+ DK + D+ EK D
Sbjct: 263 DETYDPK--KEEATASTSGAANQTTGTDADKTDKNDKNNKADKNEKGD 308
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 201 (75.8 bits), Expect = 8.0e-13, P = 8.0e-13
Identities = 64/258 (24%), Positives = 120/258 (46%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L +D +E L ++ +G V + + +D + +S G+A+V + + A+RA+D
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L + KG+ R S + +F+ N+ KS K G + + +
Sbjct: 76 TLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFG-NILSCK 134
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D S++ GF V Y + A + +K+ + V + P A
Sbjct: 135 VATDEFGKSKSYGF--VHYEDEESAKEAIEKVNGVQL----GSKNV-YVGPFIKKSERAT 187
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALK 335
++ LYVKN P++ T L++LF +GE+T ++ ++ F FI+YA+ SA
Sbjct: 188 NDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRK-FCFINYADAESAKN 246
Query: 336 AIKDTEKYEI--DGQVLE 351
A+ + +I DGQ+ E
Sbjct: 247 AMDNLNGKKITDDGQIDE 264
Score = 125 (49.1 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 48/182 (26%), Positives = 79/182 (43%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID-- 163
+F+ L K + L D G + + D + G+SK + FV + +E AK AI+
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATD-EFGKSKSYGFVHYEDEESAKEAIEKV 164
Query: 164 ---ELCSKD-FKGKTIRCSMSETNN----RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+L SK+ + G I+ S TN+ L++ N P S TE R++ G T
Sbjct: 165 NGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGE--ITSM 222
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTP-TVSWAEPKSTPDHSA 274
++K ++NR F F+ Y + A + + DG T + ++T S
Sbjct: 223 IVK---MDNKNRKFCFINYADAESAKNAMDNLNGKKITDDGQIDETYDPKKEEATASTSG 279
Query: 275 AA 276
AA
Sbjct: 280 AA 281
Score = 115 (45.5 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 26/79 (32%), Positives = 43/79 (54%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G ++I L + LR+L EP G + +++D+ +SKGF FV F S+E A +A+
Sbjct: 449 GVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKE-QSKGFGFVCFASQEEANKAV 507
Query: 163 DELCSKDFKGKTIRCSMSE 181
E+ K GK + ++E
Sbjct: 508 TEMHLKIINGKPLYVGLAE 526
Score = 107 (42.7 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGKRDFGFIHYAERSSALKAIKDTE 341
LY+KNL + L+ELF+ G +T V K + FGF+ +A + A KA+ +
Sbjct: 452 LYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMH 511
Query: 342 KYEIDGQVLEVALARPQTNK 361
I+G+ L V LA + +
Sbjct: 512 LKIINGKPLYVGLAEKREQR 531
Score = 50 (22.7 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 48 DEEYDAETSKEDQSPGANGSHINTEDAVEDE-DKRTASISEDEKEKHD 94
DE YD + KE+ + +G+ T D+ DK + D+ EK D
Sbjct: 263 DETYDPK--KEEATASTSGAANQTTGTDADKTDKNDKNNKADKNEKGD 308
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 203 (76.5 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 89/343 (25%), Positives = 149/343 (43%)
Query: 43 KQNDEDEEYDAETSKE--DQSPGANGSHI-NTEDAVE---DEDKRTASISEDEKEKHD-Q 95
KQ D E D T+ E + S S+ +TE E +E + A SE +
Sbjct: 8 KQADAAVESDVNTNNEAVESSTKEESSNTPSTETQPEKKAEEPEAAAEPSESTSTPTNAS 67
Query: 96 LLALP----PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVA 151
+A P P + +++G L +E L +L IG V + + +D + S G+A+V
Sbjct: 68 SVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVN 127
Query: 152 FRSKEVAKRAIDELCSKDFKGKTIRCSMSETN---NRLFIGNV-PKSWTEKEFRKVIEDV 207
F + E ++A+DEL KG+ R S+ + ++ GNV K+ K + D
Sbjct: 128 FHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDT 187
Query: 208 GPGVDTIELIKDPQAPSRN-RGFAFVLYYN----NACADYSRQKMTSANFKLDGNTPTVS 262
I K N +G+ FV + + NA ++ + + G+ VS
Sbjct: 188 FSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHH--VS 245
Query: 263 WAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RD 321
E +S + A + V Y+KNL T ++ +LF + GE+T + ++ K R
Sbjct: 246 RRERQSKVEALKANFTNV---YIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRG 302
Query: 322 FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
FGF++YA A KA+ + E G+ L V A+ + + E
Sbjct: 303 FGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEE 345
Score = 161 (61.7 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 51/191 (26%), Positives = 88/191 (46%)
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
++I N+ TE+EF + G + ++ L+KD + RGF FV Y N+ CA +
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGE-ITSLSLVKDQN--DKPRGFGFVNYANHECAQKAVD 319
Query: 246 KMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA-SQVKA----------LYVKNLPENTTT 294
++ +K G V A+ K + Q+K L++KNL +
Sbjct: 320 ELNDKEYK--GKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDD 377
Query: 295 KQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVA 353
++LK F G +T + GK + FGF+ Y A KA+ + + + G+ L VA
Sbjct: 378 ERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVA 437
Query: 354 LARPQTNKRTE 364
LA+ + +R++
Sbjct: 438 LAQRKEVRRSQ 448
Score = 38 (18.4 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 409 PMIYGRG--QMPA-----GMHMVP 425
P+IYG G +PA GM MVP
Sbjct: 481 PLIYGPGGYPIPAAVNGRGMPMVP 504
>UNIPROTKB|F1ND14 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0043484 IPI:IPI00854332 GO:GO:0042835
GO:GO:0006376 GeneTree:ENSGT00560000076837 OMA:PTLYNQS
EMBL:AADN02033464 Ensembl:ENSGALT00000013143
Ensembl:ENSGALT00000038511 Uniprot:F1ND14
Length = 485
Score = 162 (62.1 bits), Expect = 9.0e-13, Sum P(2) = 9.0e-13
Identities = 53/186 (28%), Positives = 92/186 (49%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSG--ESKGFAFVAFRSKEVAKRAI 162
++F+G +P+ E+DLR+L E G V+E+ +++D+ +SKG FV F +++ A A
Sbjct: 17 KMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 163 DELCS-KDFKGKTIRCSM----SETNN-----RLFIGNVPKSWTEKEFRKVIEDVGPGVD 212
+ L + K G M SE NN +LFIG + K E + R + G ++
Sbjct: 77 NALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQ-IE 135
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG-NTP-TVSWAEPKSTP 270
+++ P SR G AFV + A A + + M A ++G ++P V +A+ +
Sbjct: 136 ECRILRGPDGLSR--GCAFVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPIVVKFADTQKDK 192
Query: 271 DHSAAA 276
+ A
Sbjct: 193 EQKRIA 198
Score = 137 (53.3 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 41/183 (22%), Positives = 85/183 (46%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKD-PQAPSRNRGFAFVLYYNNACADYS 243
++F+G VP+SW EK+ R++ E G V I +++D Q P +++G FV +Y A +
Sbjct: 17 KMFVGQVPRSWCEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 244 RQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQR 303
+ + + L G + +P + ++A + + L++ + + ++ +F
Sbjct: 76 QNALHNMKI-LPGMHHPIQM-KPADSEKNNAV---EDRKLFIGMISKKCNENDIRVMFSP 130
Query: 304 HGEVTKVVTPPGKSG-KRDFGFIHYAERSSALKAIKDTEKYE-IDGQVLEVALARPQTNK 361
G++ + G G R F+ + R+ A AIK + + ++G + + T K
Sbjct: 131 FGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQK 190
Query: 362 RTE 364
E
Sbjct: 191 DKE 193
Score = 79 (32.9 bits), Expect = 9.0e-13, Sum P(2) = 9.0e-13
Identities = 29/111 (26%), Positives = 51/111 (45%)
Query: 259 PTVSWAEPKSTPDHSAAAASQVKA-----LYVKNLPENTTTKQLKELFQRHGEVT--KVV 311
PT+ + + T AA SQ + L++ +LP+ + L ++F G V KV
Sbjct: 374 PTL-YNQSLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 432
Query: 312 TPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR 362
+ + FGF+ Y SA AI+ ++I + L+V L R + + +
Sbjct: 433 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 483
>UNIPROTKB|Q5F3T7 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
EMBL:AJ851563 EMBL:AB050497 IPI:IPI00581213 IPI:IPI00854332
RefSeq:NP_001012539.1 UniGene:Gga.14943 UniGene:Gga.56092
ProteinModelPortal:Q5F3T7 SMR:Q5F3T7 STRING:Q5F3T7 PRIDE:Q5F3T7
GeneID:373923 KEGG:gga:373923 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 InParanoid:Q5F3T7 OrthoDB:EOG4N8R4X
NextBio:20813455 Uniprot:Q5F3T7
Length = 489
Score = 162 (62.1 bits), Expect = 9.3e-13, Sum P(2) = 9.3e-13
Identities = 53/186 (28%), Positives = 92/186 (49%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSG--ESKGFAFVAFRSKEVAKRAI 162
++F+G +P+ E+DLR+L E G V+E+ +++D+ +SKG FV F +++ A A
Sbjct: 17 KMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 163 DELCS-KDFKGKTIRCSM----SETNN-----RLFIGNVPKSWTEKEFRKVIEDVGPGVD 212
+ L + K G M SE NN +LFIG + K E + R + G ++
Sbjct: 77 NALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQ-IE 135
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG-NTP-TVSWAEPKSTP 270
+++ P SR G AFV + A A + + M A ++G ++P V +A+ +
Sbjct: 136 ECRILRGPDGLSR--GCAFVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPIVVKFADTQKDK 192
Query: 271 DHSAAA 276
+ A
Sbjct: 193 EQKRIA 198
Score = 137 (53.3 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 41/183 (22%), Positives = 85/183 (46%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKD-PQAPSRNRGFAFVLYYNNACADYS 243
++F+G VP+SW EK+ R++ E G V I +++D Q P +++G FV +Y A +
Sbjct: 17 KMFVGQVPRSWCEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 244 RQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQR 303
+ + + L G + +P + ++A + + L++ + + ++ +F
Sbjct: 76 QNALHNMKI-LPGMHHPIQM-KPADSEKNNAV---EDRKLFIGMISKKCNENDIRVMFSP 130
Query: 304 HGEVTKVVTPPGKSG-KRDFGFIHYAERSSALKAIKDTEKYE-IDGQVLEVALARPQTNK 361
G++ + G G R F+ + R+ A AIK + + ++G + + T K
Sbjct: 131 FGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQK 190
Query: 362 RTE 364
E
Sbjct: 191 DKE 193
Score = 79 (32.9 bits), Expect = 9.3e-13, Sum P(2) = 9.3e-13
Identities = 29/111 (26%), Positives = 51/111 (45%)
Query: 259 PTVSWAEPKSTPDHSAAAASQVKA-----LYVKNLPENTTTKQLKELFQRHGEVT--KVV 311
PT+ + + T AA SQ + L++ +LP+ + L ++F G V KV
Sbjct: 378 PTL-YNQSLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 436
Query: 312 TPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR 362
+ + FGF+ Y SA AI+ ++I + L+V L R + + +
Sbjct: 437 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 487
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 162 (62.1 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 49/170 (28%), Positives = 91/170 (53%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++E+LR L IGEV L++DK +G S G+ FV + + + A+RAI
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIS 79
Query: 164 ELCSKDFKGKTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L+I +P++ T+K+ + G +++ L+
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLV 139
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNT-P-TVSWA 264
Q +RG AF+ + + A+ + +TS N K G++ P TV +A
Sbjct: 140 D--QTTGLSRGVAFIRFDKRSEAE---EAITSFNGHKPPGSSEPITVKFA 184
Score = 160 (61.4 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 53/199 (26%), Positives = 88/199 (44%)
Query: 168 KDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNR 227
+D + R + TN L + +P++ T++E R + +G V++ +LI+D A +
Sbjct: 6 EDHMAEDCRDDIGRTN--LIVNYLPQNMTQEELRSLFSSIGE-VESAKLIRDKVA-GHSL 61
Query: 228 GFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKN 287
G+ FV Y D R T +L T VS+A P S A LY+
Sbjct: 62 GYGFVNYVT--AKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDAN-------LYISG 112
Query: 288 LPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEI 345
LP T K ++++F R G + ++V+ R FI + +RS A +AI ++
Sbjct: 113 LPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKP 172
Query: 346 DGQVLEVAL---ARPQTNK 361
G + + A P NK
Sbjct: 173 PGSSEPITVKFAANPNQNK 191
Score = 71 (30.1 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSAL 334
AS +++ NL ++ L ++F G VT KV+ + + FGF+ A
Sbjct: 240 ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAA 299
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNK 361
AI Y + ++L+V+ +TNK
Sbjct: 300 MAIASLNGYRLGDKILQVSF---KTNK 323
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 162 (62.1 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 49/170 (28%), Positives = 91/170 (53%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++E+LR L IGEV L++DK +G S G+ FV + + + A+RAI
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIS 79
Query: 164 ELCSKDFKGKTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L+I +P++ T+K+ + G +++ L+
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLV 139
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNT-P-TVSWA 264
Q +RG AF+ + + A+ + +TS N K G++ P TV +A
Sbjct: 140 D--QTTGLSRGVAFIRFDKRSEAE---EAITSFNGHKPPGSSEPITVKFA 184
Score = 160 (61.4 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 53/199 (26%), Positives = 88/199 (44%)
Query: 168 KDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNR 227
+D + R + TN L + +P++ T++E R + +G V++ +LI+D A +
Sbjct: 6 EDHMAEDCRDDIGRTN--LIVNYLPQNMTQEELRSLFSSIGE-VESAKLIRDKVA-GHSL 61
Query: 228 GFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKN 287
G+ FV Y D R T +L T VS+A P S A LY+
Sbjct: 62 GYGFVNYVT--AKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDAN-------LYISG 112
Query: 288 LPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEI 345
LP T K ++++F R G + ++V+ R FI + +RS A +AI ++
Sbjct: 113 LPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKP 172
Query: 346 DGQVLEVAL---ARPQTNK 361
G + + A P NK
Sbjct: 173 PGSSEPITVKFAANPNQNK 191
Score = 71 (30.1 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSAL 334
AS +++ NL ++ L ++F G VT KV+ + + FGF+ A
Sbjct: 240 ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAA 299
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNK 361
AI Y + ++L+V+ +TNK
Sbjct: 300 MAIASLNGYRLGDKILQVSF---KTNK 323
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 161 (61.7 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 39/137 (28%), Positives = 77/137 (56%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++++LR L IGEV L++DK +G S G+ FV + + + A+RAI+
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAIN 79
Query: 164 ELCSKDFKGKTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S++ ++ L+I +P++ T+K+ + G +++ L+
Sbjct: 80 TLNGLRLQSKTIKVSVARPSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLV 139
Query: 218 KDPQAPSRNRGFAFVLY 234
QA +RG AF+ +
Sbjct: 140 D--QATGLSRGVAFIRF 154
Score = 151 (58.2 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 54/198 (27%), Positives = 86/198 (43%)
Query: 169 DFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRG 228
D R + TN L + +P++ T+ E R + +G V++ +LI+D A + G
Sbjct: 7 DHMDDVCRDDIGRTN--LIVNYLPQNMTQDELRSLFSSIGE-VESAKLIRDKVA-GHSLG 62
Query: 229 FAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNL 288
+ FV Y N D R T +L T VS A P S S A+ LY+ L
Sbjct: 63 YGFVNYLN--AKDAERAINTLNGLRLQSKTIKVSVARPSS---ESIKDAN----LYISGL 113
Query: 289 PENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEID 346
P T K ++++F G + ++V+ R FI + +RS A +AI ++
Sbjct: 114 PRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPP 173
Query: 347 GQVLEVAL---ARPQTNK 361
G + + A P NK
Sbjct: 174 GSSEPITVKFAANPNQNK 191
Score = 101 (40.6 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 18/59 (30%), Positives = 36/59 (61%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
+ ++I GLP+ +++D+ D+ P G + ++ D+ +G S+G AF+ F + A+ AI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAI 164
Score = 72 (30.4 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 22/90 (24%), Positives = 41/90 (45%)
Query: 274 AAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERS 331
A++AS +++ NL ++ L ++F G VT KV+ + + FGF+
Sbjct: 237 ASSASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYE 296
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNK 361
A AI Y + + L+V +++K
Sbjct: 297 EAAMAIASLNGYRLGDKTLQVFFKTSKSHK 326
>UNIPROTKB|E2RGA8 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:HSAYLNP EMBL:AAEX03011056
Ensembl:ENSCAFT00000020318 Uniprot:E2RGA8
Length = 539
Score = 154 (59.3 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 40/136 (29%), Positives = 75/136 (55%)
Query: 111 LPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCS-KD 169
+P+ E+DL+ + E G +FE+ ++KDK +G KG AF+ + +++ A +A L K
Sbjct: 91 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 150
Query: 170 FKG--KTIRCSMSETNNR-----LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
G + I+ +++ +R LF+G + K T+++ RK+ E G +D +++ P
Sbjct: 151 LPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDECTVLRGPDG 209
Query: 223 PSRNRGFAFVLYYNNA 238
S+ G AFV + +A
Sbjct: 210 TSK--GCAFVKFQTHA 223
Score = 109 (43.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+G L K ++ED+R + EP G + E +++ D G SKG AFV F++ A+ AI+
Sbjct: 173 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 231
Query: 165 LCS 167
L S
Sbjct: 232 LHS 234
Score = 88 (36.0 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
+++ +LP+ T ++ ++F G V KV + + FGF+ + +SA AI+
Sbjct: 456 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 515
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
++I + L+V L RP+ R
Sbjct: 516 NGFQIGMKRLKVQLKRPKDANR 537
Score = 59 (25.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
+FI ++P+ +T+ E ++ G V + ++ D +A ++++ F FV + N A A + Q
Sbjct: 456 IFIYHLPQEFTDSEILQMFVPFGH-VISAKVFVD-RATNQSKCFGFVSFDNPASAQAAIQ 513
Query: 246 KMTSANFKLDGNTPTVSWAEPK 267
M F++ V PK
Sbjct: 514 AMNG--FQIGMKRLKVQLKRPK 533
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 163 (62.4 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 54/199 (27%), Positives = 88/199 (44%)
Query: 168 KDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNR 227
+D + R + TN L + +P++ T+ E R + +G V++ +LI+D A +
Sbjct: 6 EDHMAEDCRDDIGRTN--LIVNYLPQNMTQDELRSLFSSIGE-VESAKLIRDKVA-GHSL 61
Query: 228 GFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKN 287
G+ FV Y D R T +L T VS+A P S A LY+
Sbjct: 62 GYGFVNYVT--AKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDAN-------LYISG 112
Query: 288 LPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEI 345
LP N T K ++++F R G + ++V+ R FI + +RS A +AI ++
Sbjct: 113 LPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKP 172
Query: 346 DGQVLEVAL---ARPQTNK 361
G + + A P NK
Sbjct: 173 PGSSEPITVKFAANPNQNK 191
Score = 161 (61.7 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 51/186 (27%), Positives = 98/186 (52%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++++LR L IGEV L++DK +G S G+ FV + + + A+RAI+
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 164 ELCSKDFKGKTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L+I +P++ T+K+ + G +++ L+
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLV 139
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNT-P-TVSWAEPKSTPDHSA 274
Q +RG AF+ + + A+ + +TS N K G++ P TV +A + +
Sbjct: 140 D--QTTGLSRGVAFIRFDKRSEAE---EAITSFNGHKPPGSSEPITVKFAA-NPNQNKNV 193
Query: 275 AAASQV 280
A SQ+
Sbjct: 194 ALLSQL 199
Score = 71 (30.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSAL 334
AS +++ NL ++ L ++F G VT KV+ + + FGF+ A
Sbjct: 240 ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAA 299
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNK 361
AI Y + ++L+V+ +TNK
Sbjct: 300 MAIASLNGYRLGDKILQVSF---KTNK 323
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 161 (61.7 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 48/169 (28%), Positives = 91/169 (53%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++++LR L IGEV L++DK +G S G+ FV + + + A+RAI+
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 164 ELCSKDFKGKTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L+I +P+S T+K+ + G +++ L+
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRSMTQKDVEDMFSRFGRIINSRVLV 139
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEP 266
Q +RG AF+ + + A+ + +T NF +G+ P S +EP
Sbjct: 140 D--QTTGLSRGVAFIRFDKRSEAE---EAIT--NF--NGHKPPGS-SEP 178
Score = 159 (61.0 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 53/199 (26%), Positives = 89/199 (44%)
Query: 168 KDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNR 227
+D + R + TN L + +P++ T+ E R + +G V++ +LI+D A +
Sbjct: 6 EDHMAEDCRDDIGRTN--LIVNYLPQNMTQDELRSLFSSIGE-VESAKLIRDKVA-GHSL 61
Query: 228 GFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKN 287
G+ FV Y D R T +L T VS+A P S A LY+
Sbjct: 62 GYGFVNYVT--AKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDAN-------LYISG 112
Query: 288 LPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEI 345
LP + T K ++++F R G + ++V+ R FI + +RS A +AI + ++
Sbjct: 113 LPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNGHKP 172
Query: 346 DGQVLEVAL---ARPQTNK 361
G + + A P NK
Sbjct: 173 PGSSEPITVKFAANPNQNK 191
Score = 71 (30.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSAL 334
AS +++ NL ++ L ++F G VT KV+ + + FGF+ A
Sbjct: 240 ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAA 299
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNK 361
AI Y + ++L+V+ +TNK
Sbjct: 300 MAIASLNGYRLGDKILQVSF---KTNK 323
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 161 (61.7 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 51/186 (27%), Positives = 98/186 (52%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++++LR L IGEV L++DK +G S G+ FV + + + A+RAI+
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 164 ELCSKDFKGKTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L+I +P++ T+K+ + G +++ L+
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLV 139
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNT-P-TVSWAEPKSTPDHSA 274
Q +RG AF+ + + A+ + +TS N K G++ P TV +A + +
Sbjct: 140 D--QTTGLSRGVAFIRFDKRSEAE---EAITSFNGHKPPGSSEPITVKFAA-NPNQNKNV 193
Query: 275 AAASQV 280
A SQ+
Sbjct: 194 ALLSQL 199
Score = 157 (60.3 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 53/199 (26%), Positives = 87/199 (43%)
Query: 168 KDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNR 227
+D + R + TN L + +P++ T+ E R + +G V++ +LI+D A +
Sbjct: 6 EDHMAEDCRGDIGRTN--LIVNYLPQNMTQDELRSLFSSIGE-VESAKLIRDKVA-GHSL 61
Query: 228 GFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKN 287
G+ FV Y D R T +L T VS+A P S A LY+
Sbjct: 62 GYGFVNYVT--AKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDAN-------LYISG 112
Query: 288 LPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEI 345
LP T K ++++F R G + ++V+ R FI + +RS A +AI ++
Sbjct: 113 LPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKP 172
Query: 346 DGQVLEVAL---ARPQTNK 361
G + + A P NK
Sbjct: 173 PGSSEPITVKFAANPNQNK 191
Score = 71 (30.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSAL 334
AS +++ NL ++ L ++F G VT KV+ + + FGF+ A
Sbjct: 240 ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAA 299
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNK 361
AI Y + ++L+V+ +TNK
Sbjct: 300 MAIASLNGYRLGDKILQVSF---KTNK 323
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 161 (61.7 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 51/186 (27%), Positives = 98/186 (52%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++++LR L IGEV L++DK +G S G+ FV + + + A+RAI+
Sbjct: 28 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 87
Query: 164 ELCSKDFKGKTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L+I +P++ T+K+ + G +++ L+
Sbjct: 88 TLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLV 147
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNT-P-TVSWAEPKSTPDHSA 274
Q +RG AF+ + + A+ + +TS N K G++ P TV +A + +
Sbjct: 148 D--QTTGLSRGVAFIRFDKRSEAE---EAITSFNGHKPPGSSEPITVKFAA-NPNQNKNV 201
Query: 275 AAASQV 280
A SQ+
Sbjct: 202 ALLSQL 207
Score = 157 (60.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 53/199 (26%), Positives = 87/199 (43%)
Query: 168 KDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNR 227
+D + R + TN L + +P++ T+ E R + +G V++ +LI+D A +
Sbjct: 14 EDHMAEDCRDDIGRTN--LIVNYLPQNMTQDELRSLFSSIGE-VESAKLIRDKVA-GHSL 69
Query: 228 GFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKN 287
G+ FV Y D R T +L T VS+A P S A LY+
Sbjct: 70 GYGFVNYVT--AKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDAN-------LYISG 120
Query: 288 LPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEI 345
LP T K ++++F R G + ++V+ R FI + +RS A +AI ++
Sbjct: 121 LPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKP 180
Query: 346 DGQVLEVAL---ARPQTNK 361
G + + A P NK
Sbjct: 181 PGSSEPITVKFAANPNQNK 199
Score = 71 (30.1 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSAL 334
AS +++ NL ++ L ++F G VT KV+ + + FGF+ A
Sbjct: 248 ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAA 307
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNK 361
AI Y + ++L+V+ +TNK
Sbjct: 308 MAIASLNGYRLGDKILQVSF---KTNK 331
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 157 (60.3 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 42/142 (29%), Positives = 82/142 (57%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++FIG +P++ E+DL+ L E G++ E+ ++KD+ +G KG AF+ + ++E A +A +
Sbjct: 137 KLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNA 196
Query: 165 LCS-KDFKGKT----IRCSMSET---NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
L K G T ++ + SE+ + +LF+G + K TE++ ++ E G ++ +
Sbjct: 197 LHEQKTLPGMTRPIQVKPADSESRGEDRKLFVGMLNKQQTEEDVYRLFEPYGV-IEECTV 255
Query: 217 IKDPQAPSRNRGFAFVLYYNNA 238
++ P S+ G AFV + +A
Sbjct: 256 LRGPDGNSK--GCAFVKFSTHA 275
Score = 101 (40.6 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+G L K +EED+ L EP G + E +++ D G SKG AFV F + A+ AI
Sbjct: 225 KLFVGMLNKQQTEEDVYRLFEPYGVIEECTVLRGPD-GNSKGCAFVKFSTHAEAQSAISA 283
Query: 165 L 165
L
Sbjct: 284 L 284
Score = 85 (35.0 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
L++ +LP+ +L ++F G V +KV + + FGF+ + +SA AI+
Sbjct: 514 LFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAM 573
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
++I + L+V L RP+ R
Sbjct: 574 NGFQIGMKRLKVQLKRPKDASR 595
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 174 (66.3 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 51/176 (28%), Positives = 90/176 (51%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+G +P+ +E D R L E G VF +++DK + SKG FV F ++ A A
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGA 115
Query: 165 LCS-KDFKGK--TIRCSMSETNNR----LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + K +G ++ ++T NR LFIG + K E+ R++ G ++ ++
Sbjct: 116 LHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGH-IEDCSVL 174
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG-NTP-TVSWAEPKSTPD 271
+D SR G AFV + N +CA + ++M + ++G + P V +A+ + D
Sbjct: 175 RDQDGKSR--GCAFVTFTNRSCAVVATKEMHHSQ-TMEGCSAPLVVKFADTQKDKD 227
Score = 129 (50.5 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 45/200 (22%), Positives = 94/200 (47%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSR 244
++F+G +P+ W E + R++ E G V + +++D ++ ++G FV +Y+ A ++
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYG-SVFSCNILRD-KSTQASKGCCFVTFYHRKDAIEAQ 113
Query: 245 QKMTSANFK-LDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQR 303
+ N K ++G V +P T + + + L++ L + + L+E+F +
Sbjct: 114 GALH--NIKVIEGMHHPVQM-KPADTENRNE------RKLFIGQLSKKHNEENLREIFAK 164
Query: 304 HGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYE-IDG--QVLEVALARPQT 359
G + + GK R F+ + RS A+ A K+ + ++G L V A Q
Sbjct: 165 FGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVVKFADTQK 224
Query: 360 NK--RTEGVYSCAAGVHPSG 377
+K +T+ + + + P G
Sbjct: 225 DKDVKTKSMITGSGAGSPKG 244
Score = 66 (28.3 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
L++ +LP++ L F G + KV + + FGF+ Y SA AI
Sbjct: 505 LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAM 564
Query: 341 EKYEIDGQVLEVAL 354
++I + L+V L
Sbjct: 565 NGFQIGSKRLKVQL 578
>UNIPROTKB|Q5R995 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9601
"Pongo abelii" [GO:0003723 "RNA binding" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 EMBL:CR859496
RefSeq:NP_001125976.1 UniGene:Pab.4290 ProteinModelPortal:Q5R995
SMR:Q5R995 PRIDE:Q5R995 GeneID:100172914 KEGG:pon:100172914
InParanoid:Q5R995 Uniprot:Q5R995
Length = 513
Score = 161 (61.7 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 54/186 (29%), Positives = 92/186 (49%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSG--ESKGFAFVAFRSKEVAKRAI 162
++F+G +P+ SE+DLR+L E G V+E+ +++D+ +SKG FV F +++ A A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 163 DELCS-KDFKGKTIRCSM----SETNN-----RLFIGNVPKSWTEKEFRKVIEDVGPGVD 212
+ L + K G M SE NN +LFIG + K TE + R + G ++
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ-IE 162
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG-NTP-TVSWAEPKSTP 270
++ P SR G A V + A A + + M A ++G ++P V +A+ +
Sbjct: 163 ECRILWGPDGLSR--GCALVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPMVVKFADTQKDK 219
Query: 271 DHSAAA 276
+ A
Sbjct: 220 EQKRMA 225
Score = 133 (51.9 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 38/157 (24%), Positives = 77/157 (49%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKD-PQAPSRNRGFAFVLYYNNACADYS 243
++F+G VP++W+EK+ R++ E G V I +++D Q P +++G FV +Y A +
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 102
Query: 244 RQKMTSANFK-LDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQ 302
+ + N K L G + +P + ++A + + L++ + + T ++ +F
Sbjct: 103 QNALH--NMKVLPGMHHPIQM-KPADSEKNNAV---EDRKLFIGMISKKCTENDIRVMFS 156
Query: 303 RHGEVTKVVTPPGKSG-KRDFGFIHYAERSSALKAIK 338
G++ + G G R + + R+ A AIK
Sbjct: 157 SFGQIEECRILWGPDGLSRGCALVTFTTRAMAQTAIK 193
Score = 78 (32.5 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
L++ +LP+ + L ++F G V KV + + FGF+ Y SA AI+
Sbjct: 430 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 489
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
++I + L+V L R + + +
Sbjct: 490 NGFQIGMKRLKVQLKRSKNDSK 511
>ZFIN|ZDB-GENE-030826-35 [details] [associations]
symbol:celf2 "cugbp, Elav-like family member 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030826-35 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:AL935165 EMBL:BX511190 EMBL:CABZ01029785 EMBL:CABZ01029786
EMBL:CABZ01029787 IPI:IPI00994559 Ensembl:ENSDART00000129320
ArrayExpress:E7F7K3 Bgee:E7F7K3 Uniprot:E7F7K3
Length = 585
Score = 165 (63.1 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 50/174 (28%), Positives = 89/174 (51%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSG--ESKGFAFVAFRSKEVA 158
P ++F+G +P+ SE++L++L EP G V+++ +++D+ +SKG FV F +++ A
Sbjct: 112 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYTRKAA 171
Query: 159 KRAIDELCS-KDFKGKTIRCSM----SETNN-----RLFIGNVPKSWTEKEFRKVIEDVG 208
A + L + K G M SE +N +LFIG V K E + R + G
Sbjct: 172 LEAQNALHNIKTLTGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPYG 231
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG-NTPTV 261
++ +++ P SR G AFV + A A + + M + ++G ++P V
Sbjct: 232 Q-IEECRILRGPDGLSR--GCAFVTFSTRAMAQNAIKAMHQSQ-TMEGCSSPMV 281
Score = 141 (54.7 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 39/157 (24%), Positives = 78/157 (49%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKD-PQAPSRNRGFAFVLYYNNACADYS 243
++F+G +P+SW+EKE +++ E G V I +++D Q P +++G FV +Y A +
Sbjct: 116 KMFVGQIPRSWSEKELKELFEPYG-AVYQINILRDRSQNPPQSKGCCFVTFYTRKAALEA 174
Query: 244 RQKMTSANFK-LDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQ 302
+ + N K L G + +P D + A + + L++ + + ++ +F
Sbjct: 175 QNALH--NIKTLTGMHHPIQM-KPA---DSEKSNAVEDRKLFIGMVSKKCNENDIRVMFS 228
Query: 303 RHGEVTKVVTPPGKSG-KRDFGFIHYAERSSALKAIK 338
+G++ + G G R F+ ++ R+ A AIK
Sbjct: 229 PYGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIK 265
Score = 75 (31.5 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 26/103 (25%), Positives = 48/103 (46%)
Query: 267 KSTPDHSAAAASQVKA-----LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGK 319
+S +AA SQ + L++ +LP+ + + ++F G V KV +
Sbjct: 481 QSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVVSAKVFIDKQTNLS 540
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR 362
+ FGF+ Y SA AI+ ++I + L+V L R + + +
Sbjct: 541 KCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 583
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 161 (61.7 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 51/186 (27%), Positives = 98/186 (52%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++++LR L IGEV L++DK +G S G+ FV + + + A+RAI+
Sbjct: 47 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 106
Query: 164 ELCSKDFKGKTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L+I +P++ T+K+ + G +++ L+
Sbjct: 107 TLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLV 166
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNT-P-TVSWAEPKSTPDHSA 274
Q +RG AF+ + + A+ + +TS N K G++ P TV +A + +
Sbjct: 167 D--QTTGLSRGVAFIRFDKRSEAE---EAITSFNGHKPPGSSEPITVKFAA-NPNQNKNV 220
Query: 275 AAASQV 280
A SQ+
Sbjct: 221 ALLSQL 226
Score = 157 (60.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 53/199 (26%), Positives = 87/199 (43%)
Query: 168 KDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNR 227
+D + R + TN L + +P++ T+ E R + +G V++ +LI+D A +
Sbjct: 33 EDHMAEDCRGDIGRTN--LIVNYLPQNMTQDELRSLFSSIGE-VESAKLIRDKVA-GHSL 88
Query: 228 GFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKN 287
G+ FV Y D R T +L T VS+A P S A LY+
Sbjct: 89 GYGFVNYVT--AKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDAN-------LYISG 139
Query: 288 LPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEI 345
LP T K ++++F R G + ++V+ R FI + +RS A +AI ++
Sbjct: 140 LPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKP 199
Query: 346 DGQVLEVAL---ARPQTNK 361
G + + A P NK
Sbjct: 200 PGSSEPITVKFAANPNQNK 218
Score = 71 (30.1 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSAL 334
AS +++ NL ++ L ++F G VT KV+ + + FGF+ A
Sbjct: 267 ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAA 326
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNK 361
AI Y + ++L+V+ +TNK
Sbjct: 327 MAIASLNGYRLGDKILQVSF---KTNK 350
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 162 (62.1 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 56/229 (24%), Positives = 101/229 (44%)
Query: 43 KQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKE-KHDQLLALPP 101
+Q +E++ + + + N ++ N + + + S++ E E + DQ
Sbjct: 55 QQQNENQSLQINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSVNNKELELERDQ------ 108
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
+ VF+ LP + ++EDL +L G+V ++ D G S G+ FV F S + + A
Sbjct: 109 --TNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDP-KGNSYGYGFVRFSSPQESAAA 165
Query: 162 IDELCSKDFKGKTIRCSMSE--TN-------NRLFIGNVPKSWTEKEFRKVIEDVGPGVD 212
I+EL ++ K + C +S TN N LFI +P T+ + RK+ E G ++
Sbjct: 166 IEELDGYQYQNKKLLCRLSNLYTNLNSKYPSNNLFIKPLPYDVTDDQLRKLFEPFGKIIE 225
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTV 261
+++ D S+ GF V + + A + M D P V
Sbjct: 226 C-KVMLDHNGQSKFAGF--VRFSSELDASKAIDAMNGVRINKDSGYPLV 271
Score = 83 (34.3 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 20/74 (27%), Positives = 37/74 (50%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
L+V +LP L +LF + G++ +V+T + +GF+ + + ALK K+
Sbjct: 771 LFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKEM 830
Query: 341 EKYEIDGQVLEVAL 354
+ I + L+V L
Sbjct: 831 NGFRIGSKFLKVKL 844
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 195 (73.7 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 66/269 (24%), Positives = 117/269 (43%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + G + + + +D + S G+A V F A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN---NRLFIGNV-PKSWTEKEFRKVIEDVGPGVDTIELIKD 219
+ KGK +R S+ + R +GNV K+ + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKV 130
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
+ ++G FV + A+ + +KM N V + KS + A ++
Sbjct: 131 VCDENGSKGHGFVHFETEEAAERAIEKMNGMLL----NDRKVFVGQFKSRKEREAELGTR 186
Query: 280 VKA---LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALK 335
K +Y+KN + K L LF R G+V V + GK + FGF+ + A K
Sbjct: 187 TKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQK 246
Query: 336 AIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+ + E++G+ + V A+ + ++ E
Sbjct: 247 AVDEMNGKELNGKHIYVGPAQKKVDRHIE 275
Score = 122 (48.0 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 38/129 (29%), Positives = 59/129 (45%)
Query: 58 EDQSPGANGSHINTEDAVEDE-DKRTASISEDEK----------EKHDQLLALPPHGSEV 106
E+ S G H TE+A E +K + D K E+ +L + V
Sbjct: 134 ENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I ++ L L G+V V ++ D + G+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTD-EGGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKHI 261
Score = 99 (39.9 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
LYVKNL + ++L++ F G +T KV+T G+S + FGF+ ++ A KA+ +
Sbjct: 296 LYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRS--KGFGFVCFSSPEEATKAVSEM 353
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
+ + L VALA+ + ++
Sbjct: 354 NGRIVATKPLYVALAQRKEERQ 375
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 195 (73.7 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 67/273 (24%), Positives = 129/273 (47%)
Query: 102 HGS--EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
HG+ +++G L + ++ L D + +V V + +D + S G+ +V + + + A+
Sbjct: 42 HGALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAE 101
Query: 160 RAIDELCSKDFKGKTIRCSMSETNN---RLFIGNV-PKSWTEKEFRKVIEDVGPGVDTIE 215
+A+ +L GK IR + S ++ R +GN+ K+ + K + + G TI
Sbjct: 102 KAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIV 161
Query: 216 LIK-DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
K ++RG+ FV + A + +K+ N K+ N + + P +
Sbjct: 162 SCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKL---NGKVL-NDKQI-FVGPFLRKEERE 216
Query: 275 AAASQVKA--LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
+AA ++K +YVKNL E TT +LK F ++G ++ V GK R FGF+++
Sbjct: 217 SAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPE 276
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A +A++ + D + V A+ ++ + E
Sbjct: 277 DAARAVEALNGKKFDDKEWYVGKAQKKSERELE 309
Score = 132 (51.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 52/217 (23%), Positives = 101/217 (46%)
Query: 179 MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNA 238
M TN +++ N+ ++ T+ E + G + + +++D ++R F FV + N
Sbjct: 222 MKFTN--VYVKNLSEATTDDELKTTFGQYG-SISSAVVMRD--GDGKSRCFGFVNFENPE 276
Query: 239 CADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD---------HSAAAASQVKAL--YVKN 287
A + + + F D V A+ KS + S+ ++ L YVKN
Sbjct: 277 DAARAVEALNGKKF--DDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKN 334
Query: 288 LPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEI 345
L + T ++L+ELF G +T KV+ P + K GF+ ++ S A + + + +
Sbjct: 335 LDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGS-GFVAFSAASEASRVLNEMNGKMV 393
Query: 346 DGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAG 382
G+ L VALA+ + +R + + + + + P+ +P G
Sbjct: 394 GGKPLYVALAQRKEERRAK-LQAQFSQMRPAFIPGVG 429
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 188 (71.2 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 62/227 (27%), Positives = 101/227 (44%)
Query: 49 EEYDAETSKEDQSP----GANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGS 104
E DAE + ED++P GA G IN ED A IS E G
Sbjct: 18 EACDAEAA-EDKAPAGQNGAEGEQINASKGEEDAGC-VADISSPLTE-----------GV 64
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+GGL D S++DL+D GEV + + D ++G S+GF F+ F+ E + ++
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEH 124
Query: 165 ----LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDP 220
L + K + ++F+G + E + R+ E G ++ IEL DP
Sbjct: 125 KEHRLDGRLIDPKKAMAMKKDPIKKIFVGGLNPEAGEDQIREYFETFGE-IEAIELPMDP 183
Query: 221 QAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK 267
+ R RGF F+ + D ++ + + G+ + A+PK
Sbjct: 184 KTNKR-RGFVFITFKEE---DPVKKILEKKFHNVSGSKCEIKIAQPK 226
Score = 136 (52.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 43/177 (24%), Positives = 81/177 (45%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVD-TIELIKDPQAPSRNRGFAFVLYYNNACADYS 243
++F+G + ++K+ + G D TI++ DP R+RGF F+L+ + D
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKM--DPNT-GRSRGFGFILFKDAESVD-- 119
Query: 244 RQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQR 303
+ + +LDG +PK A +K ++V L Q++E F+
Sbjct: 120 -KVLEHKEHRLDGRL-----IDPKKA---MAMKKDPIKKIFVGGLNPEAGEDQIREYFET 170
Query: 304 HGEVTKVVTP--PGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358
GE+ + P P + +R F FI + E +K I + + + + G E+ +A+P+
Sbjct: 171 FGEIEAIELPMDPKTNKRRGFVFITFKEEDP-VKKILEKKFHNVSGSKCEIKIAQPK 226
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 156 (60.0 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 38/137 (27%), Positives = 75/137 (54%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++E+L+ L IGE+ LV+DK +G+S G+ FV + + A++AI+
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 164 ELCSKDFKGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L++ +PK+ T+KE ++ G + T ++
Sbjct: 99 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 157
Query: 218 KDPQAPSRNRGFAFVLY 234
D Q +RG F+ +
Sbjct: 158 VD-QVTGISRGVGFIRF 173
Score = 156 (60.0 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 51/193 (26%), Positives = 93/193 (48%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+TN L + +P++ T++E + + +G +++ +L++D + ++ G+ FV Y +
Sbjct: 37 SKTN--LIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPK- 91
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
D + T +L T VS+A P S A LYV LP+ T K+L++
Sbjct: 92 -DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-------LYVSGLPKTMTQKELEQ 143
Query: 300 LFQRHGEV-TKVVTPPGKSG-KRDFGFIHYAERSSALKAIKDTEKYEIDG--QVLEVALA 355
LF ++G + T + +G R GFI + +R A +AIK + G + + V A
Sbjct: 144 LFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 203
Query: 356 RPQTNKRTEGVYS 368
+ K + + S
Sbjct: 204 NNPSQKTNQAILS 216
Score = 92 (37.4 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++ GLPK ++++L L G + ++ D+ +G S+G F+ F + A+ AI
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 164 ELCSKDFKGKTIRCSMSETNN 184
L + G T ++ NN
Sbjct: 185 GLNGQKPPGATEPITVKFANN 205
Score = 75 (31.5 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
++V NL + L ++F G VT KV+ + + FGF+ A AI
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 341 EKYEIDGQVLEVALARPQTNK 361
Y + +VL+V+ +T+K
Sbjct: 325 NGYRLGDRVLQVSFKTNKTHK 345
>ZFIN|ZDB-GENE-060929-244 [details] [associations]
symbol:rbms3 "RNA binding motif, single stranded
interacting protein" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060929-244
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00630000089747 EMBL:CR626944 EMBL:CR848052
EMBL:CR848810 IPI:IPI00920287 Ensembl:ENSDART00000125804
Ensembl:ENSDART00000136719 Uniprot:F1QEI2
Length = 415
Score = 179 (68.1 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 37/127 (29%), Positives = 69/127 (54%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ ++I GLP +++DL LC+P G++ + DK++ + KG+ FV F S A++A+
Sbjct: 56 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 115
Query: 164 ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
L + + + + + N L+I N+P S E+E +++ G + T +++D
Sbjct: 116 SLKASGVQAQMAKQQEQDPTN-LYISNLPVSMDEQELENMLKPFGHVIST-RILRDANGV 173
Query: 224 SRNRGFA 230
SR GFA
Sbjct: 174 SRGVGFA 180
Score = 52 (23.4 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 261 VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTT 294
V+ A P+S P S A+ Q +AL V+N ++ T
Sbjct: 375 VTDASPQSVPASSQDASGQQQALGVENTSDHAPT 408
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 156 (60.0 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 38/137 (27%), Positives = 75/137 (54%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++E+L+ L IGE+ LV+DK +G+S G+ FV + + A++AI+
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 164 ELCSKDFKGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L++ +PK+ T+KE ++ G + T ++
Sbjct: 99 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 157
Query: 218 KDPQAPSRNRGFAFVLY 234
D Q +RG F+ +
Sbjct: 158 VD-QVTGISRGVGFIRF 173
Score = 156 (60.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 51/193 (26%), Positives = 93/193 (48%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+TN L + +P++ T++E + + +G +++ +L++D + ++ G+ FV Y +
Sbjct: 37 SKTN--LIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPK- 91
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
D + T +L T VS+A P S A LYV LP+ T K+L++
Sbjct: 92 -DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-------LYVSGLPKTMTQKELEQ 143
Query: 300 LFQRHGEV-TKVVTPPGKSG-KRDFGFIHYAERSSALKAIKDTEKYEIDG--QVLEVALA 355
LF ++G + T + +G R GFI + +R A +AIK + G + + V A
Sbjct: 144 LFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 203
Query: 356 RPQTNKRTEGVYS 368
+ K + + S
Sbjct: 204 NNPSQKTNQAILS 216
Score = 92 (37.4 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++ GLPK ++++L L G + ++ D+ +G S+G F+ F + A+ AI
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 164 ELCSKDFKGKTIRCSMSETNN 184
L + G T ++ NN
Sbjct: 185 GLNGQKPPGATEPITVKFANN 205
Score = 75 (31.5 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
++V NL + L ++F G VT KV+ + + FGF+ A AI
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 341 EKYEIDGQVLEVALARPQTNK 361
Y + +VL+V+ +T+K
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 156 (60.0 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 38/137 (27%), Positives = 75/137 (54%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++E+L+ L IGE+ LV+DK +G+S G+ FV + + A++AI+
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 164 ELCSKDFKGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L++ +PK+ T+KE ++ G + T ++
Sbjct: 99 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 157
Query: 218 KDPQAPSRNRGFAFVLY 234
D Q +RG F+ +
Sbjct: 158 VD-QVTGISRGVGFIRF 173
Score = 156 (60.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 51/193 (26%), Positives = 93/193 (48%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+TN L + +P++ T++E + + +G +++ +L++D + ++ G+ FV Y +
Sbjct: 37 SKTN--LIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPK- 91
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
D + T +L T VS+A P S A LYV LP+ T K+L++
Sbjct: 92 -DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-------LYVSGLPKTMTQKELEQ 143
Query: 300 LFQRHGEV-TKVVTPPGKSG-KRDFGFIHYAERSSALKAIKDTEKYEIDG--QVLEVALA 355
LF ++G + T + +G R GFI + +R A +AIK + G + + V A
Sbjct: 144 LFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 203
Query: 356 RPQTNKRTEGVYS 368
+ K + + S
Sbjct: 204 NNPSQKTNQAILS 216
Score = 92 (37.4 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++ GLPK ++++L L G + ++ D+ +G S+G F+ F + A+ AI
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 164 ELCSKDFKGKTIRCSMSETNN 184
L + G T ++ NN
Sbjct: 185 GLNGQKPPGATEPITVKFANN 205
Score = 75 (31.5 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
++V NL + L ++F G VT KV+ + + FGF+ A AI
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 341 EKYEIDGQVLEVALARPQTNK 361
Y + +VL+V+ +T+K
Sbjct: 339 NGYRLGDRVLQVSFKTNKTHK 359
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 159 (61.0 bits), Expect = 9.5e-09, P = 9.5e-09
Identities = 50/193 (25%), Positives = 94/193 (48%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+TN L + +P+S T++E + + +G +++ +L++D + ++ G+ FV Y +
Sbjct: 65 SKTN--LIVNYLPQSMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYVDPK- 119
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
D + T +L T VS+A P S A LYV LP+ T K+L++
Sbjct: 120 -DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-------LYVSGLPKTMTQKELEQ 171
Query: 300 LFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIK--DTEKYEIDGQVLEVALA 355
LF ++G + ++++ R GFI + +R A +AIK + +K + + V A
Sbjct: 172 LFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQKPPAATEPITVKFA 231
Query: 356 RPQTNKRTEGVYS 368
+ K + + S
Sbjct: 232 NNPSQKTNQAILS 244
Score = 157 (60.3 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 38/137 (27%), Positives = 74/137 (54%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP+ ++E+L+ L IGE+ LV+DK +G+S G+ FV + + A++AI+
Sbjct: 67 TNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAIN 126
Query: 164 ELCSKDFKGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L++ +PK+ T+KE ++ G + T ++
Sbjct: 127 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 185
Query: 218 KDPQAPSRNRGFAFVLY 234
D Q +RG F+ +
Sbjct: 186 VD-QVTGMSRGVGFIRF 201
Score = 87 (35.7 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 20/81 (24%), Positives = 40/81 (49%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++ GLPK ++++L L G + ++ D+ +G S+G F+ F + A+ AI
Sbjct: 153 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIK 212
Query: 164 ELCSKDFKGKTIRCSMSETNN 184
L + T ++ NN
Sbjct: 213 GLNGQKPPAATEPITVKFANN 233
Score = 75 (31.5 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
++V NL + L ++F G VT KV+ + + FGF+ A AI
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 341 EKYEIDGQVLEVALARPQTNK 361
Y + +VL+V+ +T+K
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 145 (56.1 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 43/143 (30%), Positives = 65/143 (45%)
Query: 44 QNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDE-DKRTASISEDEK----------EK 92
Q D E+ S G H T++A E +K + D K E+
Sbjct: 88 QRDPSLRKSGVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 147
Query: 93 HDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAF 152
+L A + V+I +D +E L+DL G V ++ D +SG+SKGF FV+F
Sbjct: 148 EAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSF 206
Query: 153 RSKEVAKRAIDELCSKDFKGKTI 175
E A++A+DE+ K+ GK I
Sbjct: 207 ERHEDAQKAVDEMNGKELNGKQI 229
Score = 138 (53.6 bits), Expect = 4.0e-12, Sum P(3) = 4.0e-12
Identities = 35/140 (25%), Positives = 65/140 (46%)
Query: 226 NRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYV 285
++G+ FV + A+ + +KM D + K A A + +Y+
Sbjct: 105 SKGYGFVHFETQEAAERAIEKMNGMLLN-DRKVFVGRFKSRKEREAELGARAKEFTNVYI 163
Query: 286 KNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYE 344
KN E+ ++LK+LF + G V +SGK + FGF+ + A KA+ + E
Sbjct: 164 KNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE 223
Query: 345 IDGQVLEVALARPQTNKRTE 364
++G+ + V A+ + ++TE
Sbjct: 224 LNGKQIYVGRAQKKVERQTE 243
Score = 105 (42.0 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 44/190 (23%), Positives = 86/190 (45%)
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
++I N + ++ + + GP + +++++ D S+ GF FV + + A +
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPAL-SVKVMTDESGKSK--GFGFVSFERHEDAQKAVD 217
Query: 246 KMTSANFKLDGNTPTVSWAEPK-STPDHSAAAASQVKA----------LYVKNLPENTTT 294
+M +L+G V A+ K Q+K LYVKNL +
Sbjct: 218 EMNGK--ELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 275
Query: 295 KQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEV 352
++L++ F G +T KV+ G+S + FGF+ ++ A KA+ + + + L V
Sbjct: 276 ERLRKEFSPFGTITSAKVMMEGGRS--KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 333
Query: 353 ALARPQTNKR 362
ALA+ + ++
Sbjct: 334 ALAQRKEERQ 343
Score = 103 (41.3 bits), Expect = 4.0e-12, Sum P(3) = 4.0e-12
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL 186
+ KGK +R S+ + L
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSL 93
Score = 38 (18.4 bits), Expect = 4.0e-12, Sum P(3) = 4.0e-12
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 407 QQPMIYGRGQMPAGMHMVPMVLP 429
QQP ++ +GQ P M+ P
Sbjct: 501 QQPAVHVQGQEPLTASMLASAPP 523
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 138 (53.6 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 38/160 (23%), Positives = 80/160 (50%)
Query: 84 SISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGE 143
S+ + ++++ +QL G VF+G +P +EE + + G + ++ ++KDK +
Sbjct: 3 SLQQQQQQQFNQL-----GGFTVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNV 57
Query: 144 SKGFAFVAFRSKEVAKRAID---------ELCSKDFKGKTIRCSMSETNNRLFIGNVPKS 194
SKG AF+ F +KE A A++ E +K + K + + +LFIG + S
Sbjct: 58 SKGCAFITFSTKEEADNALNTTNESGTFLENMNKPLQVKYSDNEIEKMERKLFIGMLGTS 117
Query: 195 WTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLY 234
E + R + + G ++ + ++++ + +G+ F+ Y
Sbjct: 118 -DEDQIRILFGNYGI-IEDLNIVREKDG--KPKGYGFIKY 153
Score = 117 (46.2 bits), Expect = 0.00043, P = 0.00043
Identities = 34/136 (25%), Positives = 65/136 (47%)
Query: 43 KQNDEDEEYDAETSKEDQSPGANGSH-INTEDAVE-DEDKRTASISEDEKEKHDQLLALP 100
+QN + + S+ Q+ G NG + V + + +++++ Q P
Sbjct: 224 QQNQYQPFFYGQNSQMSQAMGNNGYRGYQQQPNVNFGMMQGNQAFDYNQQQQQQQQQQQP 283
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
+++FI LP +E+L+ L P G V + DK++ +SK F FV++ + + A
Sbjct: 284 NESNDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIA 343
Query: 161 AIDELCSKDFKGKTIR 176
AI EL + +GK ++
Sbjct: 344 AIQELNGRAIEGKKLK 359
Score = 95 (38.5 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 30/123 (24%), Positives = 53/123 (43%)
Query: 236 NNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTK 295
NN Y +Q + NF + + + + ++ L++ LP +
Sbjct: 245 NNGYRGYQQQP--NVNFGMMQGNQAFDYNQQQQQQQQQQQP-NESNDLFIYYLPFTYGDE 301
Query: 296 QLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVA 353
+LK+LF +G V +KV + FGF+ Y SA+ AI++ I+G+ L+V
Sbjct: 302 ELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIAAIQELNGRAIEGKKLKVN 361
Query: 354 LAR 356
R
Sbjct: 362 FKR 364
Score = 82 (33.9 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 18/64 (28%), Positives = 40/64 (62%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++FIG L + E+ +R L G + ++ +V++KD G+ KG+ F+ + +++ ++ A+ E
Sbjct: 108 KLFIGMLGT-SDEDQIRILFGNYGIIEDLNIVREKD-GKPKGYGFIKYSTRDESENALRE 165
Query: 165 LCSK 168
+ K
Sbjct: 166 IDGK 169
>MGI|MGI:2387367 [details] [associations]
symbol:Rbm45 "RNA binding motif protein 45" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007399 "nervous system
development" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030154 "cell differentiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:2387367 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828
HOVERGEN:HBG051404 OMA:DIWVVKD EMBL:AB036992 EMBL:AY152391
EMBL:AK089975 EMBL:BC057890 IPI:IPI00221908 RefSeq:NP_700454.1
UniGene:Mm.33310 ProteinModelPortal:Q8BHN5 SMR:Q8BHN5 STRING:Q8BHN5
PhosphoSite:Q8BHN5 PaxDb:Q8BHN5 PRIDE:Q8BHN5
Ensembl:ENSMUST00000046389 GeneID:241490 KEGG:mmu:241490
GeneTree:ENSGT00680000100059 InParanoid:Q8BHN5 OrthoDB:EOG43R3MJ
NextBio:385019 Bgee:Q8BHN5 CleanEx:MM_RBM45 Genevestigator:Q8BHN5
GermOnline:ENSMUSG00000042369 Uniprot:Q8BHN5
Length = 476
Score = 140 (54.3 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 43/151 (28%), Positives = 80/151 (52%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP+ S +F+ + K SE LR+ P G++ ++ +V+DK + ESKG AFV F A
Sbjct: 23 PPN-SRIFLV-ISKHTSELVLRERFSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQAC 80
Query: 160 RAIDEL---CSKDFKGKTIRCSMSETNN-------------RLFIGNVPKSWTEKEFRKV 203
RA++E+ C K I+ ++++ + R+F+ +PKS+TE++ R+
Sbjct: 81 RAMEEMHGQCLGPSDTKPIKVFIAQSRSSGSHRDVEDEELTRIFV-MIPKSYTEEDLREK 139
Query: 204 IEDVGPGVDTIELIKDPQAPSRNRGFAFVLY 234
+ G ++ +IK+ + ++G +V Y
Sbjct: 140 FKVYGD-IEYCSIIKN-KVTGESKGLGYVRY 168
Score = 108 (43.1 bits), Expect = 4.3e-12, Sum P(3) = 4.3e-12
Identities = 22/68 (32%), Positives = 41/68 (60%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +F+ +PK +EEDLR+ + G++ ++K+K +GESKG +V + A +AI+
Sbjct: 121 TRIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIE 179
Query: 164 ELCSKDFK 171
C + F+
Sbjct: 180 N-CDRSFR 186
Score = 93 (37.8 bits), Expect = 4.3e-12, Sum P(3) = 4.3e-12
Identities = 30/110 (27%), Positives = 57/110 (51%)
Query: 188 IGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKM 247
+ VP +TE++ + D+ PG++ E+ +DP + N G V Y+N A A Y++ K+
Sbjct: 253 VSRVP--FTEEQLFSIF-DIVPGLEYCEVPRDPYS---NYGHGVVQYFNVASAIYAKYKL 306
Query: 248 TSANFKLDGNTPTVSWAEPKST-PDHSAAAASQVKALYVKNLPENTTTKQ 296
+ GN VS+ + S + A+Q+ A + ++ +TT++Q
Sbjct: 307 HGFQYP-PGNRIVVSFLDDGSNMTELIRKMATQMVAAQLASMVWSTTSQQ 355
Score = 77 (32.2 bits), Expect = 4.3e-12, Sum P(3) = 4.3e-12
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEK 342
L+V P L+++F R G + +V GK+ G++ YA+R SA +AI
Sbjct: 394 LFVVFNPHPLPLDVLEDIFCRFGNLIEVYLVSGKN----VGYVKYADRKSANEAITTLHG 449
Query: 343 YEIDGQVLEVALA---RPQTNKR 362
++G L+V LA R ++ KR
Sbjct: 450 KILNGVRLKVMLADSPREESKKR 472
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 169 (64.5 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 42/167 (25%), Positives = 82/167 (49%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+GGL D S++DL+D GEV + + D ++G S+GF F+ F+ ++ +++
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 165 ----LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDP 220
L + K + ++F+G + TE++ R+ + G ++ IEL DP
Sbjct: 61 KEHRLDGRLIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE-IEAIELPMDP 119
Query: 221 QAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK 267
+ R RGF F+ + D ++ + + G+ + A+PK
Sbjct: 120 KTNKR-RGFVFITFKEE---DPVKKVLEKKFHNVSGSKCEIKVAQPK 162
Score = 138 (53.6 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 48/209 (22%), Positives = 90/209 (43%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVD-TIELIKDPQAPSRNRGFAFVLYYNNACADYS 243
++F+G + ++K+ + G D TI++ DP R+RGF F+L+ +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKM--DPNT-GRSRGFGFILFKEPGSVE-- 55
Query: 244 RQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQR 303
+ + +LDG +PK A VK ++V L T ++++E F
Sbjct: 56 -KVLEQKEHRLDGRL-----IDPKKA---MAMKKDPVKKIFVGGLNPEATEEKIREYFGE 106
Query: 304 HGEVTKVVTP--PGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNK 361
GE+ + P P + +R F FI + E +K + + + + + G E+ +A+P+
Sbjct: 107 FGEIEAIELPMDPKTNKRRGFVFITFKEEDP-VKKVLEKKFHNVSGSKCEIKVAQPKEVY 165
Query: 362 RTEGVYSCAAGVHPSGLPHAGYGSFAGTA 390
+ + S G G G G+A
Sbjct: 166 QQQQFSSGGGRGSYGGRGRGGRGGGQGSA 194
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 189 (71.6 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 55/208 (26%), Positives = 99/208 (47%)
Query: 71 TEDAVEDE--D-KRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPI 127
TE +EDE D K + I +D+ + ++F+GGL ++ + +
Sbjct: 6 TETVIEDEIHDPKPSEDIEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKY 65
Query: 128 GEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE---LCSKDFKGK-TI-RCSMSET 182
GE+ + ++KD+ +G+ +GF FV + V + I + + K + K TI R SMS
Sbjct: 66 GEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDNHIIIGKQVEIKRTIPRGSMSSN 125
Query: 183 N---NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
+ ++F+G +P S + EF++ G + ++++D + R+RGF FV Y +
Sbjct: 126 DFKTKKIFVGGIPSSVDDDEFKEFFMQFGE-LKEHQIMRD-HSTGRSRGFGFVTYESEDM 183
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPK 267
D+ K +L G + AEPK
Sbjct: 184 VDHLLAK--GNRIELSGTQVEIKKAEPK 209
Score = 139 (54.0 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 40/180 (22%), Positives = 82/180 (45%)
Query: 181 ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACA 240
++ ++F+G + + T EF K G D++ ++KD + + RGF FV Y +++
Sbjct: 39 DSAGKIFVGGLARETTSAEFLKHFGKYGEITDSV-IMKDRKT-GQPRGFGFVTYADSSVV 96
Query: 241 DYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKEL 300
D K+ N + G + P+ + ++ + K ++V +P + + KE
Sbjct: 97 D----KVIQDNHIIIGKQVEIKRTIPRGS---MSSNDFKTKKIFVGGIPSSVDDDEFKEF 149
Query: 301 FQRHGEVTK-VVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358
F + GE+ + + +G+ R FGF+ Y + + E+ G +E+ A P+
Sbjct: 150 FMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 156 (60.0 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 38/137 (27%), Positives = 75/137 (54%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++E+L+ L IGE+ LV+DK +G+S G+ FV + + A++AI+
Sbjct: 67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 126
Query: 164 ELCSKDFKGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L++ +PK+ T+KE ++ G + T ++
Sbjct: 127 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 185
Query: 218 KDPQAPSRNRGFAFVLY 234
D Q +RG F+ +
Sbjct: 186 VD-QVTGISRGVGFIRF 201
Score = 156 (60.0 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 51/193 (26%), Positives = 93/193 (48%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+TN L + +P++ T++E + + +G +++ +L++D + ++ G+ FV Y +
Sbjct: 65 SKTN--LIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPK- 119
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
D + T +L T VS+A P S A LYV LP+ T K+L++
Sbjct: 120 -DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-------LYVSGLPKTMTQKELEQ 171
Query: 300 LFQRHGEV-TKVVTPPGKSG-KRDFGFIHYAERSSALKAIKDTEKYEIDG--QVLEVALA 355
LF ++G + T + +G R GFI + +R A +AIK + G + + V A
Sbjct: 172 LFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 231
Query: 356 RPQTNKRTEGVYS 368
+ K + + S
Sbjct: 232 NNPSQKTNQAILS 244
Score = 92 (37.4 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++ GLPK ++++L L G + ++ D+ +G S+G F+ F + A+ AI
Sbjct: 153 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 212
Query: 164 ELCSKDFKGKTIRCSMSETNN 184
L + G T ++ NN
Sbjct: 213 GLNGQKPPGATEPITVKFANN 233
Score = 75 (31.5 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
++V NL + L ++F G VT KV+ + + FGF+ A AI
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 341 EKYEIDGQVLEVALARPQTNK 361
Y + +VL+V+ +T+K
Sbjct: 366 NGYRLGDRVLQVSFKTNKTHK 386
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 156 (60.0 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 38/137 (27%), Positives = 75/137 (54%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++E+L+ L IGE+ LV+DK +G+S G+ FV + + A++AI+
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 127
Query: 164 ELCSKDFKGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L++ +PK+ T+KE ++ G + T ++
Sbjct: 128 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 186
Query: 218 KDPQAPSRNRGFAFVLY 234
D Q +RG F+ +
Sbjct: 187 VD-QVTGISRGVGFIRF 202
Score = 156 (60.0 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 51/193 (26%), Positives = 93/193 (48%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+TN L + +P++ T++E + + +G +++ +L++D + ++ G+ FV Y +
Sbjct: 66 SKTN--LIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPK- 120
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
D + T +L T VS+A P S A LYV LP+ T K+L++
Sbjct: 121 -DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-------LYVSGLPKTMTQKELEQ 172
Query: 300 LFQRHGEV-TKVVTPPGKSG-KRDFGFIHYAERSSALKAIKDTEKYEIDG--QVLEVALA 355
LF ++G + T + +G R GFI + +R A +AIK + G + + V A
Sbjct: 173 LFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 232
Query: 356 RPQTNKRTEGVYS 368
+ K + + S
Sbjct: 233 NNPSQKTNQAILS 245
Score = 92 (37.4 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++ GLPK ++++L L G + ++ D+ +G S+G F+ F + A+ AI
Sbjct: 154 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 213
Query: 164 ELCSKDFKGKTIRCSMSETNN 184
L + G T ++ NN
Sbjct: 214 GLNGQKPPGATEPITVKFANN 234
Score = 75 (31.5 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
++V NL + L ++F G VT KV+ + + FGF+ A AI
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 341 EKYEIDGQVLEVALARPQTNK 361
Y + +VL+V+ +T+K
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 166 (63.5 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 51/193 (26%), Positives = 95/193 (49%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+TN L + +P++ T++EFR + +G +++ +L++D + ++ G+ FV Y +
Sbjct: 49 SKTN--LIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPK- 103
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
D + T +L T VS+A P S A LYV LP+ T K+L++
Sbjct: 104 -DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-------LYVSGLPKTMTQKELEQ 155
Query: 300 LFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDG--QVLEVALA 355
LF ++G + ++++ R GFI + +R A +AIK + G + + V A
Sbjct: 156 LFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 215
Query: 356 RPQTNKRTEGVYS 368
+ K ++ + S
Sbjct: 216 NNPSQKTSQALLS 228
Score = 156 (60.0 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 51/185 (27%), Positives = 93/185 (50%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++E+ R L IGE+ LV+DK +G+S G+ FV + + A++AI+
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 164 ELCSKDFKGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L++ +PK+ T+KE ++ G + T ++
Sbjct: 111 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 169
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT-P-TVSWAEPKSTPDHSAA 275
D Q +RG F+ + A+ + + + K G T P TV +A S S A
Sbjct: 170 VD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ--KPSGATEPITVKFANNPSQKT-SQA 225
Query: 276 AASQV 280
SQ+
Sbjct: 226 LLSQL 230
Score = 74 (31.1 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
++V NL ++ L +LF G V KV+ + + FGF+ A AI
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 341 EKYEIDGQVLEVALARPQTNK 361
Y + +VL+V+ +T+K
Sbjct: 350 NGYRLGDRVLQVSFKTNKTHK 370
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 154 (59.3 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 38/130 (29%), Positives = 72/130 (55%)
Query: 111 LPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF 170
LP++ ++E+L+ L IGE+ LV+DK +G+S G+ FV + + A++AI+ L
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 171 KGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPS 224
+ KTI+ S + ++ L++ +PK+ T+KE ++ G + T ++ D Q
Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 163
Query: 225 RNRGFAFVLY 234
+RG F+ +
Sbjct: 164 ISRGVGFIRF 173
Score = 150 (57.9 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 51/193 (26%), Positives = 92/193 (47%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+TN L +P++ T++E + + +G +++ +L++D + ++ G+ FV Y +
Sbjct: 37 SKTN--LIDNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPK- 91
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
D + T +L T VS+A P S A LYV LP+ T K+L++
Sbjct: 92 -DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-------LYVSGLPKTMTQKELEQ 143
Query: 300 LFQRHGEV-TKVVTPPGKSG-KRDFGFIHYAERSSALKAIKDTEKYEIDG--QVLEVALA 355
LF ++G + T + +G R GFI + +R A +AIK + G + + V A
Sbjct: 144 LFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 203
Query: 356 RPQTNKRTEGVYS 368
+ K + + S
Sbjct: 204 NNPSQKTNQAILS 216
Score = 92 (37.4 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++ GLPK ++++L L G + ++ D+ +G S+G F+ F + A+ AI
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 164 ELCSKDFKGKTIRCSMSETNN 184
L + G T ++ NN
Sbjct: 185 GLNGQKPPGATEPITVKFANN 205
Score = 75 (31.5 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
++V NL + L ++F G VT KV+ + + FGF+ A AI
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 341 EKYEIDGQVLEVALARPQTNK 361
Y + +VL+V+ +T+K
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 154 (59.3 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 38/130 (29%), Positives = 72/130 (55%)
Query: 111 LPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF 170
LP++ ++E+L+ L IGE+ LV+DK +G+S G+ FV + + A++AI+ L
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 171 KGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPS 224
+ KTI+ S + ++ L++ +PK+ T+KE ++ G + T ++ D Q
Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 163
Query: 225 RNRGFAFVLY 234
+RG F+ +
Sbjct: 164 ISRGVGFIRF 173
Score = 150 (57.9 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 51/193 (26%), Positives = 92/193 (47%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+TN L +P++ T++E + + +G +++ +L++D + ++ G+ FV Y +
Sbjct: 37 SKTN--LIDNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPK- 91
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
D + T +L T VS+A P S A LYV LP+ T K+L++
Sbjct: 92 -DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-------LYVSGLPKTMTQKELEQ 143
Query: 300 LFQRHGEV-TKVVTPPGKSG-KRDFGFIHYAERSSALKAIKDTEKYEIDG--QVLEVALA 355
LF ++G + T + +G R GFI + +R A +AIK + G + + V A
Sbjct: 144 LFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 203
Query: 356 RPQTNKRTEGVYS 368
+ K + + S
Sbjct: 204 NNPSQKTNQAILS 216
Score = 92 (37.4 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++ GLPK ++++L L G + ++ D+ +G S+G F+ F + A+ AI
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 164 ELCSKDFKGKTIRCSMSETNN 184
L + G T ++ NN
Sbjct: 185 GLNGQKPPGATEPITVKFANN 205
Score = 75 (31.5 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
++V NL + L ++F G VT KV+ + + FGF+ A AI
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 341 EKYEIDGQVLEVALARPQTNK 361
Y + +VL+V+ +T+K
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
>TAIR|locus:4515103541 [details] [associations]
symbol:AT5G08695 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:YLEWAPR IPI:IPI00539175 RefSeq:NP_001119193.1 UniGene:At.68994
ProteinModelPortal:F4KCG5 SMR:F4KCG5 EnsemblPlants:AT5G08695.1
GeneID:6241377 KEGG:ath:AT5G08695 Uniprot:F4KCG5
Length = 690
Score = 152 (58.6 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
Identities = 60/181 (33%), Positives = 90/181 (49%)
Query: 42 VKQN-DEDEEYDAETSKEDQSPGANGSHINTE---DAVEDEDKRTASISEDEKEKHDQLL 97
+K+N D D E D S+ED N I+ E D V+ +D A E E + D +L
Sbjct: 173 IKKNLDSDCETD---SRED---AINVFPIDGEVKADRVDKDDDGHAM--EVEADGSDDVL 224
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
+F+ GLP +EE+L + G++ EV LV DKD+ +G AFV + E
Sbjct: 225 ----DAGRLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPES 280
Query: 158 AKRAIDELCSKDFKGKTIRC------SMS--ETNNRLFIGNVPKSWTEK--EFRKVIEDV 207
AK A+D+L F+G+T+ +MS + +N N+PKS+ ++ E RK E
Sbjct: 281 AKMAMDKLDKLPFQGRTLHILPAKPRAMSAKQVDNS---SNLPKSFKKEREEQRKASEAC 337
Query: 208 G 208
G
Sbjct: 338 G 338
Score = 102 (41.0 bits), Expect = 8.4e-11, Sum P(3) = 8.4e-11
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
S + + +PK +E+ LR + GE+ +V L + D G S+ FA++ FRS++ A+ AI
Sbjct: 4 SRIIVKNVPKYVTEDQLRGIFSEKGEITDVKLKRLSD-GRSRQFAYIGFRSEQKAQDAIT 62
Query: 164 ELCSKDFK 171
+K+FK
Sbjct: 63 YF-NKNFK 69
Score = 92 (37.4 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDT 340
L+V LP +TT ++L E F + G++++V K + R F+ Y SA A+
Sbjct: 229 LFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDKL 288
Query: 341 EKYEIDGQVLEVALARPQ 358
+K G+ L + A+P+
Sbjct: 289 DKLPFQGRTLHILPAKPR 306
Score = 86 (35.3 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEK 342
L VK+LP +T K+L ++F++ G + K+V PP K+ F+ AE +A+ + T +
Sbjct: 423 LLVKHLPFASTEKELAQMFRKFGSLDKIVLPPTKTMALVV-FLEAAEARAAMNGLAYT-R 480
Query: 343 YE 344
Y+
Sbjct: 481 YK 482
Score = 86 (35.3 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
Identities = 32/130 (24%), Positives = 65/130 (50%)
Query: 183 NNRLFIGNVPKSWTEKEFRKVIEDV---GPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
+N L + N+ T++ +K + V G + ++I+D R+ G+ FV + +
Sbjct: 534 SNVLHVKNLSFKTTDEGLKKHLTGVVKQGKILSVKQIIRD-WTRRRSSGYGFVEFDSVET 592
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPK--STPDHSAAAASQVKALYVKNLPENTTTKQL 297
A S + N LDG++ ++++E K T + +++ L+VKN+ T K+L
Sbjct: 593 AT-SVYRDLPGNV-LDGHSLILNFSENKRSETVGEGSDKVTKLAKLHVKNVAFEATKKEL 650
Query: 298 KELFQRHGEV 307
++LF G++
Sbjct: 651 RQLFSPFGQI 660
Score = 84 (34.6 bits), Expect = 8.4e-11, Sum P(3) = 8.4e-11
Identities = 29/106 (27%), Positives = 46/106 (43%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSR 244
RLF+ +P S TE+E + G + + L+ D S RG AFVLY A +
Sbjct: 228 RLFVHGLPYSTTEEELMEHFSKFGD-ISEVHLVLDKDTRSC-RGMAFVLYLIPESAKMAM 285
Query: 245 QKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPE 290
K+ F+ G T + A+P++ +S + + K E
Sbjct: 286 DKLDKLPFQ--GRTLHILPAKPRAMSAKQVDNSSNLPKSFKKEREE 329
Score = 61 (26.5 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 23/95 (24%), Positives = 43/95 (45%)
Query: 278 SQVKALYVKNLPENTTTKQLKELFQ---RHGE---VTKVVTPPGKSGKRDFGFIHYAERS 331
++ L+VKNL TT + LK+ + G+ V +++ + +GF+ +
Sbjct: 532 TESNVLHVKNLSFKTTDEGLKKHLTGVVKQGKILSVKQIIRDWTRRRSSGYGFVEFDSVE 591
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGV 366
+A +D +DG L + + NKR+E V
Sbjct: 592 TATSVYRDLPGNVLDGHSLILNFSE---NKRSETV 623
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 175 (66.7 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 52/193 (26%), Positives = 96/193 (49%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+TN L + +P++ T++EFR + +G +++ +L++D + ++ G+ FV Y +
Sbjct: 86 SKTN--LIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPK- 140
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
D + T +L T VS+A P S A LYV LP+ T K+L++
Sbjct: 141 -DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-------LYVSGLPKTMTQKELEQ 192
Query: 300 LFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDG--QVLEVALA 355
LF ++G + ++++ G R GFI + +R A +AIK + G + + V A
Sbjct: 193 LFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFA 252
Query: 356 RPQTNKRTEGVYS 368
+ K ++ + S
Sbjct: 253 NNPSQKTSQALLS 265
Score = 156 (60.0 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 38/137 (27%), Positives = 74/137 (54%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++E+ R L IGE+ LV+DK +G+S G+ FV + + A++AI+
Sbjct: 88 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 147
Query: 164 ELCSKDFKGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L++ +PK+ T+KE ++ G + T ++
Sbjct: 148 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 206
Query: 218 KDPQAPSRNRGFAFVLY 234
D Q +RG F+ +
Sbjct: 207 VD-QVTGGSRGVGFIRF 222
Score = 89 (36.4 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 20/81 (24%), Positives = 40/81 (49%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++ GLPK ++++L L G + ++ D+ +G S+G F+ F + A+ AI
Sbjct: 174 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIK 233
Query: 164 ELCSKDFKGKTIRCSMSETNN 184
L + G ++ NN
Sbjct: 234 GLNGQKPSGAAEPITVKFANN 254
Score = 74 (31.1 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
++V NL ++ L +LF G V KV+ + + FGF+ A AI
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 341 EKYEIDGQVLEVALARPQTNK 361
Y + +VL+V+ +T+K
Sbjct: 387 NGYRLGDRVLQVSFKTNKTHK 407
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 190 (71.9 bits), Expect = 8.5e-12, P = 8.5e-12
Identities = 68/272 (25%), Positives = 124/272 (45%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 32 ASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMD 91
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + GK +R S+ + +FI N+ K K G + + +
Sbjct: 92 TMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFG-NILSCK 150
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D S+ G+ FV + A + QK+ L G V +P++ +
Sbjct: 151 VAIDEDGFSK--GYGFVHFETEEAAQNAIQKVNG--MLLAGKKVFVGKFQPRAQRNRELG 206
Query: 276 -AASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSS 332
A Q +YVKN ++ + L++LF + G +T +V+T GKS + FGF+ +A
Sbjct: 207 ETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKS--KGFGFVAFANPEE 264
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A A++ I+G L++ + R Q K++E
Sbjct: 265 AETAVQALHDSTIEGTDLKLHVCRAQ--KKSE 294
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 190 (71.9 bits), Expect = 9.0e-12, P = 9.0e-12
Identities = 64/270 (23%), Positives = 119/270 (44%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L ++ L + G+V V + +D + S G+ +V + + + A RA++
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 164 ELCSKDFKGKTIRC--SMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
EL G+ IR S+ + + R +FI N+ KS K + GP + + +
Sbjct: 105 ELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGP-ILSCK 163
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ DP S+ G+ FV Y + A + K+ L+ V K D S
Sbjct: 164 VAVDPSGQSK--GYGFVQYDTDEAAQGAIDKLNG--MLLNDKQVYVGPFVHKLQRDPSGE 219
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGKRDFGFIHYAERSSAL 334
+YVKNL E+ + ++L ++F G T V+ G+ + FGF+++ A
Sbjct: 220 KVKFTN-VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAA 278
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A+ D + V A+ ++ + TE
Sbjct: 279 RAVDALNGKTFDDKEWFVGKAQKKSERETE 308
Score = 140 (54.3 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 58/211 (27%), Positives = 102/211 (48%)
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
+++ N+ +S +++E KV + G + +++D + S+ GF FV + N+ D + +
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCV-IMRDGEGKSK--GFGFVNFENS---DDAAR 279
Query: 246 KMTSANFK-LDGNTPTVSWAEPKSTPD-----------HSAAAASQVKALYVKNLPENTT 293
+ + N K D V A+ KS + AA SQ LYVKNL E+ T
Sbjct: 280 AVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVT 339
Query: 294 TKQLKELFQRHGEVT--KVVTPPGKSG-KRDFGFIHYAERSSALKAIKDTEKYEIDGQVL 350
+L+E F G +T KV+ P SG R GF+ ++ A +AI + I + L
Sbjct: 340 DDKLREHFAPFGTITSCKVMRDP--SGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPL 397
Query: 351 EVALARPQTNKRTEGVYSCAAGVHPSGLPHA 381
VALA+ + +++ + + + + P +P A
Sbjct: 398 YVALAQRKEDRKAR-LQAQFSQMRPVNMPPA 427
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 166 (63.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 51/193 (26%), Positives = 95/193 (49%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+TN L + +P++ T++EFR + +G +++ +L++D + ++ G+ FV Y +
Sbjct: 44 SKTN--LIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPK- 98
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
D + T +L T VS+A P S A LYV LP+ T K+L++
Sbjct: 99 -DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-------LYVSGLPKTMTQKELEQ 150
Query: 300 LFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDG--QVLEVALA 355
LF ++G + ++++ R GFI + +R A +AIK + G + + V A
Sbjct: 151 LFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 210
Query: 356 RPQTNKRTEGVYS 368
+ K ++ + S
Sbjct: 211 NNPSQKSSQALLS 223
Score = 157 (60.3 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 51/185 (27%), Positives = 93/185 (50%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++E+ R L IGE+ LV+DK +G+S G+ FV + + A++AI+
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 164 ELCSKDFKGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L++ +PK+ T+KE ++ G + T ++
Sbjct: 106 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 164
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT-P-TVSWAEPKSTPDHSAA 275
D Q +RG F+ + A+ + + + K G T P TV +A S S A
Sbjct: 165 VD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ--KPSGATEPITVKFANNPSQKS-SQA 220
Query: 276 AASQV 280
SQ+
Sbjct: 221 LLSQL 225
Score = 70 (29.7 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
++V NL ++ L +LF G V KV+ + + FGF+ A AI
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 341 EKYEIDGQVLEVALARPQTNK 361
Y + +VL+V+ +TNK
Sbjct: 345 NGYRLGDRVLQVSF---KTNK 362
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 166 (63.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 51/193 (26%), Positives = 95/193 (49%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+TN L + +P++ T++EFR + +G +++ +L++D + ++ G+ FV Y +
Sbjct: 44 SKTN--LIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPK- 98
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
D + T +L T VS+A P S A LYV LP+ T K+L++
Sbjct: 99 -DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-------LYVSGLPKTMTQKELEQ 150
Query: 300 LFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDG--QVLEVALA 355
LF ++G + ++++ R GFI + +R A +AIK + G + + V A
Sbjct: 151 LFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 210
Query: 356 RPQTNKRTEGVYS 368
+ K ++ + S
Sbjct: 211 NNPSQKSSQALLS 223
Score = 157 (60.3 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 51/185 (27%), Positives = 93/185 (50%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++E+ R L IGE+ LV+DK +G+S G+ FV + + A++AI+
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 164 ELCSKDFKGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L++ +PK+ T+KE ++ G + T ++
Sbjct: 106 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 164
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT-P-TVSWAEPKSTPDHSAA 275
D Q +RG F+ + A+ + + + K G T P TV +A S S A
Sbjct: 165 VD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ--KPSGATEPITVKFANNPSQKS-SQA 220
Query: 276 AASQV 280
SQ+
Sbjct: 221 LLSQL 225
Score = 70 (29.7 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
++V NL ++ L +LF G V KV+ + + FGF+ A AI
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 341 EKYEIDGQVLEVALARPQTNK 361
Y + +VL+V+ +TNK
Sbjct: 345 NGYRLGDRVLQVSF---KTNK 362
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 166 (63.5 bits), Expect = 9.4e-12, P = 9.4e-12
Identities = 51/189 (26%), Positives = 87/189 (46%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+GGL ++E LR GEV + ++KDK + +S+GF FV F+ +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 165 ----LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDP 220
L ++ KG S + +N++F+G +P + E E R+ + G V + +I D
Sbjct: 71 RPHTLDGRNQKGPR---SDNSKSNKIFVGGIPHNCGETELREYFKKFGV-VTEVVMIYDA 126
Query: 221 QAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA--AAS 278
+ R RGF F+ + + D Q + + G V AEP+ + + AS
Sbjct: 127 EK-QRPRGFGFITFEDEQSVD---QAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGAS 182
Query: 279 QVKALYVKN 287
Q + V N
Sbjct: 183 QWGSRVVPN 191
Score = 154 (59.3 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 51/179 (28%), Positives = 88/179 (49%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSR 244
+LF+G + S T++ R G VD + ++KD + +++RGF FV + + C
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCV-IMKD-KTTNQSRGFGFVKFKDPNCVG--- 65
Query: 245 QKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRH 304
+ S LDG P+S D+S + ++V +P N +L+E F++
Sbjct: 66 TVLASRPHTLDGRNQK----GPRS--DNSKS-----NKIFVGGIPHNCGETELREYFKKF 114
Query: 305 GEVTKVVT--PPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNK 361
G VT+VV K R FGFI + + S +A+ + ++I G+ +EV A P+ +K
Sbjct: 115 GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPRDSK 172
Score = 115 (45.5 bits), Expect = 0.00023, P = 0.00023
Identities = 21/78 (26%), Positives = 43/78 (55%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+++F+GG+P + E +LR+ + G V EV ++ D + +GF F+ F ++ +A++
Sbjct: 91 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 150
Query: 164 ELCSKDFKGKTIRCSMSE 181
+ D GK + +E
Sbjct: 151 -MHFHDIMGKKVEVKRAE 167
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 166 (63.5 bits), Expect = 9.4e-12, P = 9.4e-12
Identities = 44/136 (32%), Positives = 70/136 (51%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++FIGGL D +++DL+D GEV + L D +G S+GF FV F+ E + +D+
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 165 LCSKDFKGKTI---RCSMSETNN---RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
K GK I R +T ++F+G + E++ R+ G V++IEL
Sbjct: 62 KEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPM 119
Query: 219 DPQAPSRNRGFAFVLY 234
D + R RGF F+ +
Sbjct: 120 DNKTNKR-RGFCFITF 134
Score = 136 (52.9 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 58/209 (27%), Positives = 95/209 (45%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVD-TIELIKDPQAPSRNRGFAFVLYYNNACADYS 243
++FIG + T+K+ + G VD T++L DP R+RGF FVL+ + D
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL--DP-ITGRSRGFGFVLFKESESVD-- 56
Query: 244 RQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQR 303
+ M KL+G +PK + VK ++V L +T ++++E F
Sbjct: 57 -KVMDQKEHKLNGKV-----IDPKRAK--AMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 108
Query: 304 HGEVTKVVTP-PGKSGKR-DFGFIHYAERSSALKAIKDTEKYEIDGQV---LEVALARPQ 358
GEV + P K+ KR F FI + E K ++ +KY G ++VA+++ Q
Sbjct: 109 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME--KKYHNVGLSKCEIKVAMSKEQ 166
Query: 359 TNKRTE-GVYSCAAGVHPS--GLPHAGYG 384
++ + G AG G +GYG
Sbjct: 167 YQQQQQWGSRGGFAGRARGRGGDQQSGYG 195
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 166 (63.5 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 51/193 (26%), Positives = 95/193 (49%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+TN L + +P++ T++EFR + +G +++ +L++D + ++ G+ FV Y +
Sbjct: 49 SKTN--LIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPK- 103
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
D + T +L T VS+A P S A LYV LP+ T K+L++
Sbjct: 104 -DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-------LYVSGLPKTMTQKELEQ 155
Query: 300 LFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDG--QVLEVALA 355
LF ++G + ++++ R GFI + +R A +AIK + G + + V A
Sbjct: 156 LFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 215
Query: 356 RPQTNKRTEGVYS 368
+ K ++ + S
Sbjct: 216 NNPSQKSSQALLS 228
Score = 157 (60.3 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 51/185 (27%), Positives = 93/185 (50%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++E+ R L IGE+ LV+DK +G+S G+ FV + + A++AI+
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 164 ELCSKDFKGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L++ +PK+ T+KE ++ G + T ++
Sbjct: 111 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 169
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT-P-TVSWAEPKSTPDHSAA 275
D Q +RG F+ + A+ + + + K G T P TV +A S S A
Sbjct: 170 VD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ--KPSGATEPITVKFANNPSQKS-SQA 225
Query: 276 AASQV 280
SQ+
Sbjct: 226 LLSQL 230
Score = 70 (29.7 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
++V NL ++ L +LF G V KV+ + + FGF+ A AI
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 341 EKYEIDGQVLEVALARPQTNK 361
Y + +VL+V+ +TNK
Sbjct: 350 NGYRLGDRVLQVSF---KTNK 367
>UNIPROTKB|C9J9B2 [details] [associations]
symbol:RBMS3 "RNA-binding motif,
single-stranded-interacting protein 3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000008467 EMBL:AC012262 EMBL:AC021068 EMBL:AC092795
EMBL:AC092796 EMBL:AC097633 EMBL:AC098650 EMBL:AC099048
HGNC:HGNC:13427 ChiTaRS:RBMS3 IPI:IPI00924610
ProteinModelPortal:C9J9B2 SMR:C9J9B2 STRING:C9J9B2
Ensembl:ENST00000445033 ArrayExpress:C9J9B2 Bgee:C9J9B2
Uniprot:C9J9B2
Length = 264
Score = 178 (67.7 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 37/127 (29%), Positives = 69/127 (54%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ ++I GLP +++DL LC+P G++ + DK++ + KG+ FV F S A++A+
Sbjct: 61 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 120
Query: 164 ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
L + + + + + N L+I N+P S E+E +++ G + T +++D
Sbjct: 121 SLKANGVQAQMAKQQEQDPTN-LYISNLPISMDEQELENMLKPFGHVIST-RILRDANGV 178
Query: 224 SRNRGFA 230
SR GFA
Sbjct: 179 SRGVGFA 185
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 166 (63.5 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 51/193 (26%), Positives = 95/193 (49%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+TN L + +P++ T++EFR + +G +++ +L++D + ++ G+ FV Y +
Sbjct: 37 SKTN--LIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPK- 91
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
D + T +L T VS+A P S A LYV LP+ T K+L++
Sbjct: 92 -DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-------LYVSGLPKTMTQKELEQ 143
Query: 300 LFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDG--QVLEVALA 355
LF ++G + ++++ R GFI + +R A +AIK + G + + V A
Sbjct: 144 LFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 203
Query: 356 RPQTNKRTEGVYS 368
+ K ++ + S
Sbjct: 204 NNPSQKSSQALLS 216
Score = 157 (60.3 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 51/185 (27%), Positives = 93/185 (50%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++E+ R L IGE+ LV+DK +G+S G+ FV + + A++AI+
Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 164 ELCSKDFKGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L++ +PK+ T+KE ++ G + T ++
Sbjct: 99 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 157
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT-P-TVSWAEPKSTPDHSAA 275
D Q +RG F+ + A+ + + + K G T P TV +A S S A
Sbjct: 158 VD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ--KPSGATEPITVKFANNPSQKS-SQA 213
Query: 276 AASQV 280
SQ+
Sbjct: 214 LLSQL 218
Score = 70 (29.7 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
++V NL ++ L +LF G V KV+ + + FGF+ A AI
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 341 EKYEIDGQVLEVALARPQTNK 361
Y + +VL+V+ +TNK
Sbjct: 352 NGYRLGDRVLQVSF---KTNK 369
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 166 (63.5 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 51/193 (26%), Positives = 95/193 (49%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+TN L + +P++ T++EFR + +G +++ +L++D + ++ G+ FV Y +
Sbjct: 37 SKTN--LIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPK- 91
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
D + T +L T VS+A P S A LYV LP+ T K+L++
Sbjct: 92 -DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-------LYVSGLPKTMTQKELEQ 143
Query: 300 LFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDG--QVLEVALA 355
LF ++G + ++++ R GFI + +R A +AIK + G + + V A
Sbjct: 144 LFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 203
Query: 356 RPQTNKRTEGVYS 368
+ K ++ + S
Sbjct: 204 NNPSQKSSQALLS 216
Score = 157 (60.3 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 51/185 (27%), Positives = 93/185 (50%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++E+ R L IGE+ LV+DK +G+S G+ FV + + A++AI+
Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 164 ELCSKDFKGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L++ +PK+ T+KE ++ G + T ++
Sbjct: 99 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 157
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT-P-TVSWAEPKSTPDHSAA 275
D Q +RG F+ + A+ + + + K G T P TV +A S S A
Sbjct: 158 VD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ--KPSGATEPITVKFANNPSQKS-SQA 213
Query: 276 AASQV 280
SQ+
Sbjct: 214 LLSQL 218
Score = 70 (29.7 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
++V NL ++ L +LF G V KV+ + + FGF+ A AI
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 341 EKYEIDGQVLEVALARPQTNK 361
Y + +VL+V+ +TNK
Sbjct: 352 NGYRLGDRVLQVSF---KTNK 369
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 166 (63.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 51/193 (26%), Positives = 95/193 (49%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+TN L + +P++ T++EFR + +G +++ +L++D + ++ G+ FV Y +
Sbjct: 44 SKTN--LIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPK- 98
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
D + T +L T VS+A P S A LYV LP+ T K+L++
Sbjct: 99 -DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-------LYVSGLPKTMTQKELEQ 150
Query: 300 LFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDG--QVLEVALA 355
LF ++G + ++++ R GFI + +R A +AIK + G + + V A
Sbjct: 151 LFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 210
Query: 356 RPQTNKRTEGVYS 368
+ K ++ + S
Sbjct: 211 NNPSQKSSQALLS 223
Score = 157 (60.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 51/185 (27%), Positives = 93/185 (50%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++E+ R L IGE+ LV+DK +G+S G+ FV + + A++AI+
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 164 ELCSKDFKGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L++ +PK+ T+KE ++ G + T ++
Sbjct: 106 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 164
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT-P-TVSWAEPKSTPDHSAA 275
D Q +RG F+ + A+ + + + K G T P TV +A S S A
Sbjct: 165 VD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ--KPSGATEPITVKFANNPSQKS-SQA 220
Query: 276 AASQV 280
SQ+
Sbjct: 221 LLSQL 225
Score = 70 (29.7 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
++V NL ++ L +LF G V KV+ + + FGF+ A AI
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 341 EKYEIDGQVLEVALARPQTNK 361
Y + +VL+V+ +TNK
Sbjct: 359 NGYRLGDRVLQVSF---KTNK 376
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 166 (63.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 51/193 (26%), Positives = 95/193 (49%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+TN L + +P++ T++EFR + +G +++ +L++D + ++ G+ FV Y +
Sbjct: 44 SKTN--LIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPK- 98
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
D + T +L T VS+A P S A LYV LP+ T K+L++
Sbjct: 99 -DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-------LYVSGLPKTMTQKELEQ 150
Query: 300 LFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDG--QVLEVALA 355
LF ++G + ++++ R GFI + +R A +AIK + G + + V A
Sbjct: 151 LFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 210
Query: 356 RPQTNKRTEGVYS 368
+ K ++ + S
Sbjct: 211 NNPSQKSSQALLS 223
Score = 157 (60.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 51/185 (27%), Positives = 93/185 (50%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++E+ R L IGE+ LV+DK +G+S G+ FV + + A++AI+
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 164 ELCSKDFKGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L++ +PK+ T+KE ++ G + T ++
Sbjct: 106 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 164
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT-P-TVSWAEPKSTPDHSAA 275
D Q +RG F+ + A+ + + + K G T P TV +A S S A
Sbjct: 165 VD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ--KPSGATEPITVKFANNPSQKS-SQA 220
Query: 276 AASQV 280
SQ+
Sbjct: 221 LLSQL 225
Score = 70 (29.7 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
++V NL ++ L +LF G V KV+ + + FGF+ A AI
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 341 EKYEIDGQVLEVALARPQTNK 361
Y + +VL+V+ +TNK
Sbjct: 359 NGYRLGDRVLQVSF---KTNK 376
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 166 (63.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 51/193 (26%), Positives = 95/193 (49%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+TN L + +P++ T++EFR + +G +++ +L++D + ++ G+ FV Y +
Sbjct: 60 SKTN--LIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPK- 114
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
D + T +L T VS+A P S A LYV LP+ T K+L++
Sbjct: 115 -DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-------LYVSGLPKTMTQKELEQ 166
Query: 300 LFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDG--QVLEVALA 355
LF ++G + ++++ R GFI + +R A +AIK + G + + V A
Sbjct: 167 LFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 226
Query: 356 RPQTNKRTEGVYS 368
+ K ++ + S
Sbjct: 227 NNPSQKSSQALLS 239
Score = 157 (60.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 51/185 (27%), Positives = 93/185 (50%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++E+ R L IGE+ LV+DK +G+S G+ FV + + A++AI+
Sbjct: 62 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 121
Query: 164 ELCSKDFKGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L++ +PK+ T+KE ++ G + T ++
Sbjct: 122 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 180
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT-P-TVSWAEPKSTPDHSAA 275
D Q +RG F+ + A+ + + + K G T P TV +A S S A
Sbjct: 181 VD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ--KPSGATEPITVKFANNPSQKS-SQA 236
Query: 276 AASQV 280
SQ+
Sbjct: 237 LLSQL 241
Score = 70 (29.7 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
++V NL ++ L +LF G V KV+ + + FGF+ A AI
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 341 EKYEIDGQVLEVALARPQTNK 361
Y + +VL+V+ +TNK
Sbjct: 361 NGYRLGDRVLQVSF---KTNK 378
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 166 (63.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 51/193 (26%), Positives = 95/193 (49%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+TN L + +P++ T++EFR + +G +++ +L++D + ++ G+ FV Y +
Sbjct: 48 SKTN--LIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPK- 102
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
D + T +L T VS+A P S A LYV LP+ T K+L++
Sbjct: 103 -DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-------LYVSGLPKTMTQKELEQ 154
Query: 300 LFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDG--QVLEVALA 355
LF ++G + ++++ R GFI + +R A +AIK + G + + V A
Sbjct: 155 LFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 214
Query: 356 RPQTNKRTEGVYS 368
+ K ++ + S
Sbjct: 215 NNPSQKSSQALLS 227
Score = 157 (60.3 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 51/185 (27%), Positives = 93/185 (50%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++E+ R L IGE+ LV+DK +G+S G+ FV + + A++AI+
Sbjct: 50 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 109
Query: 164 ELCSKDFKGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L++ +PK+ T+KE ++ G + T ++
Sbjct: 110 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 168
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT-P-TVSWAEPKSTPDHSAA 275
D Q +RG F+ + A+ + + + K G T P TV +A S S A
Sbjct: 169 VD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ--KPSGATEPITVKFANNPSQKS-SQA 224
Query: 276 AASQV 280
SQ+
Sbjct: 225 LLSQL 229
Score = 70 (29.7 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
++V NL ++ L +LF G V KV+ + + FGF+ A AI
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 341 EKYEIDGQVLEVALARPQTNK 361
Y + +VL+V+ +TNK
Sbjct: 363 NGYRLGDRVLQVSF---KTNK 380
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 166 (63.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 51/193 (26%), Positives = 95/193 (49%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+TN L + +P++ T++EFR + +G +++ +L++D + ++ G+ FV Y +
Sbjct: 49 SKTN--LIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPK- 103
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
D + T +L T VS+A P S A LYV LP+ T K+L++
Sbjct: 104 -DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-------LYVSGLPKTMTQKELEQ 155
Query: 300 LFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDG--QVLEVALA 355
LF ++G + ++++ R GFI + +R A +AIK + G + + V A
Sbjct: 156 LFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 215
Query: 356 RPQTNKRTEGVYS 368
+ K ++ + S
Sbjct: 216 NNPSQKSSQALLS 228
Score = 157 (60.3 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 51/185 (27%), Positives = 93/185 (50%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++E+ R L IGE+ LV+DK +G+S G+ FV + + A++AI+
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 164 ELCSKDFKGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L++ +PK+ T+KE ++ G + T ++
Sbjct: 111 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 169
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT-P-TVSWAEPKSTPDHSAA 275
D Q +RG F+ + A+ + + + K G T P TV +A S S A
Sbjct: 170 VD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ--KPSGATEPITVKFANNPSQKS-SQA 225
Query: 276 AASQV 280
SQ+
Sbjct: 226 LLSQL 230
Score = 70 (29.7 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
++V NL ++ L +LF G V KV+ + + FGF+ A AI
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 341 EKYEIDGQVLEVALARPQTNK 361
Y + +VL+V+ +TNK
Sbjct: 364 NGYRLGDRVLQVSF---KTNK 381
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 166 (63.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 51/193 (26%), Positives = 95/193 (49%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+TN L + +P++ T++EFR + +G +++ +L++D + ++ G+ FV Y +
Sbjct: 49 SKTN--LIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPK- 103
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
D + T +L T VS+A P S A LYV LP+ T K+L++
Sbjct: 104 -DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-------LYVSGLPKTMTQKELEQ 155
Query: 300 LFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDG--QVLEVALA 355
LF ++G + ++++ R GFI + +R A +AIK + G + + V A
Sbjct: 156 LFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 215
Query: 356 RPQTNKRTEGVYS 368
+ K ++ + S
Sbjct: 216 NNPSQKSSQALLS 228
Score = 157 (60.3 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 51/185 (27%), Positives = 93/185 (50%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++E+ R L IGE+ LV+DK +G+S G+ FV + + A++AI+
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 164 ELCSKDFKGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L++ +PK+ T+KE ++ G + T ++
Sbjct: 111 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 169
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT-P-TVSWAEPKSTPDHSAA 275
D Q +RG F+ + A+ + + + K G T P TV +A S S A
Sbjct: 170 VD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ--KPSGATEPITVKFANNPSQKS-SQA 225
Query: 276 AASQV 280
SQ+
Sbjct: 226 LLSQL 230
Score = 70 (29.7 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
++V NL ++ L +LF G V KV+ + + FGF+ A AI
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 341 EKYEIDGQVLEVALARPQTNK 361
Y + +VL+V+ +TNK
Sbjct: 364 NGYRLGDRVLQVSF---KTNK 381
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 181 (68.8 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 52/179 (29%), Positives = 81/179 (45%)
Query: 63 GANGSHINTEDAVEDEDKRTASISEDEKE-KHDQLLALPPHGSEVFIGGLPKDASEEDLR 121
G GS +E A D K +H + ++FIGGL D +++DL+
Sbjct: 55 GTEGSSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLK 114
Query: 122 DLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI---RCS 178
D GEV + L D +G S+GF FV F+ E + +D+ K GK I R
Sbjct: 115 DYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK-LNGKVIDPKRAK 173
Query: 179 MSETNN---RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLY 234
+T ++F+G + E++ R+ G V++IEL D + R RGF F+ +
Sbjct: 174 AMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMDNKTNKR-RGFCFITF 230
Score = 136 (52.9 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 58/209 (27%), Positives = 95/209 (45%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVD-TIELIKDPQAPSRNRGFAFVLYYNNACADYS 243
++FIG + T+K+ + G VD T++L DP R+RGF FVL+ + D
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL--DP-ITGRSRGFGFVLFKESESVD-- 152
Query: 244 RQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQR 303
+ M KL+G +PK + VK ++V L +T ++++E F
Sbjct: 153 -KVMDQKEHKLNGKV-----IDPKRAK--AMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 304 HGEVTKVVTP-PGKSGKR-DFGFIHYAERSSALKAIKDTEKYEIDGQV---LEVALARPQ 358
GEV + P K+ KR F FI + E K ++ +KY G ++VA+++ Q
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME--KKYHNVGLSKCEIKVAMSKEQ 262
Query: 359 TNKRTE-GVYSCAAGVHPS--GLPHAGYG 384
++ + G AG G +GYG
Sbjct: 263 YQQQQQWGSRGGFAGRARGRGGDQQSGYG 291
Score = 123 (48.4 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 36/119 (30%), Positives = 62/119 (52%)
Query: 249 SANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKA--LYVKNLPENTTTKQLKELFQRHGE 306
S K+D + S+P HS AA +Q + +++ L +TT K LK+ F + GE
Sbjct: 63 SEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGE 122
Query: 307 V---TKVVTP-PGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNK 361
V T + P G+S R FGF+ + E S K + D ++++++G+V++ A+ K
Sbjct: 123 VVDCTLKLDPITGRS--RGFGFVLFKESESVDK-VMDQKEHKLNGKVIDPKRAKAMKTK 178
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 143 (55.4 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 39/141 (27%), Positives = 67/141 (47%)
Query: 39 DGNVKQNDEDE---EYDAETSKEDQSPGANGSHINTEDAVEDEDK-RTASISEDEKEKHD 94
D N K+N +D+ + + E KE + N D +DE K + E + K D
Sbjct: 295 DVNNKENKKDKMKIDDNKENKKEKKKDKKKNKKDNDNDGDDDESKIKPIKYFEHDYTKED 354
Query: 95 QLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRS 154
+ + +F+ L EEDL + G++ E+ + D DS +SKG AF+ +
Sbjct: 355 EDVG---ESGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLI 411
Query: 155 KEVAKRAIDELCSKDFKGKTI 175
E A +A++++ K F+G+ I
Sbjct: 412 PENAVQALNDMDGKVFQGRLI 432
Score = 100 (40.3 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERSSALKAIKDTE 341
+ +KNLP +T K++++LF +GE+ V P +G R FGF+ + A A++
Sbjct: 797 IIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFLTEEEAKNAMEALG 856
Query: 342 KYEIDGQVLEVALARPQTN 360
G+ L + A N
Sbjct: 857 NSHFYGRHLVLQYAEQDKN 875
Score = 79 (32.9 bits), Expect = 7.3e-10, Sum P(2) = 7.3e-10
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
L VKN+P T +L ELF + GE+++VV P R I Y + A K+
Sbjct: 555 LLVKNIPFKTQEHELHELFSKFGELSRVVLSPA----RTIALIEYIHPNEAKVGFKN 607
Score = 78 (32.5 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
Identities = 31/129 (24%), Positives = 56/129 (43%)
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
++ S + S+N K + + T + A +T + + +Y+KNL TT + L
Sbjct: 640 SEKSEKSSDSSNDKKEVESTTKTAATTTTT---KKGTDNNTQFVYIKNLNWKTTNETLVG 696
Query: 300 LFQRHGEVTKV-----VTPPGKSGKR--DFGFIHYAERSSALKAIKDTEKYEIDGQVLEV 352
F+ + V P S + FGFI ++ + A + IK IDG + +
Sbjct: 697 KFKSLKDYVNVNIATKANPKNPSERLPCGFGFIEFSSKQGAYECIKKLNGSSIDGYEISL 756
Query: 353 ALA-RPQTN 360
L+ + +TN
Sbjct: 757 KLSDKNETN 765
Score = 76 (31.8 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 17/59 (28%), Positives = 35/59 (59%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
+ + + LPK +++ ++ E G V + ++K KD G+S+ F F+ F +++ AK A+
Sbjct: 4 TRICVKQLPKHLTDKRFKEHFEKFGTVTDAKIIK-KD-GKSRLFGFIGFSTEQSAKNAL 60
Score = 70 (29.7 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 22/92 (23%), Positives = 44/92 (47%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
++ ++++ I N+P T KE RK+ G + ++ + K P +RGF FV +
Sbjct: 791 NKPSSKIIIKNLPFESTIKEIRKLFTAYGE-IQSVRIPKKPNGG--HRGFGFVEFLTEEE 847
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
A + + + +++F G + +AE D
Sbjct: 848 AKNAMEALGNSHFY--GRHLVLQYAEQDKNID 877
Score = 37 (18.1 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 25/122 (20%), Positives = 40/122 (32%)
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGP-------GVDTIELIKDPQAPSRNRGFAFVLY 234
+N L + N+P E E ++ G TI LI+ GF + Y
Sbjct: 551 SNTVLLVKNIPFKTQEHELHELFSKFGELSRVVLSPARTIALIEYIHPNEAKVGFKNLAY 610
Query: 235 YNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTT 294
+ FKL + +E S+ +V++ K TTT
Sbjct: 611 SKFHHVPLYLEWAPEGVFKLPAPPKEIKKSEKSEKSSDSSNDKKEVEST-TKTAATTTTT 669
Query: 295 KQ 296
K+
Sbjct: 670 KK 671
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 184 (69.8 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 68/272 (25%), Positives = 120/272 (44%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+++G L D +E+ L P G + + +D + G+ +V FR A+ A++ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 166 CSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
GK R S+ ++RL FI N+ KS + + G + + +++
Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFG-SILSCKVV 138
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
D ++G+A+V + + A A+ + M N V K + +A
Sbjct: 139 CDDNG---SKGYAYVHFDSLAAANRAIWHMNGVRL----NNRQVYVGRFKFPEERAAEVR 191
Query: 278 SQVKA----LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSS 332
++ KA ++VKN ++ +LKELF +G V SGK + FGF+ Y +
Sbjct: 192 TRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEA 251
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ D IDG+VL V A+ + + E
Sbjct: 252 AQKAVLDLHGKSIDGKVLYVGRAQKKIERLAE 283
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 183 (69.5 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 57/213 (26%), Positives = 105/213 (49%)
Query: 181 ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACA 240
E +LFIG + T++ + E G VD + ++KDP+ R+RGF F+ Y +++
Sbjct: 28 EHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVV-VMKDPRT-KRSRGFGFITYSHSSMI 85
Query: 241 DYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKEL 300
D + QK S K+DG A P+ D A A+ VK L+V L ++ + +++
Sbjct: 86 DEA-QK--SRPHKIDGRVVEPKRAVPRQDIDSPNAGAT-VKKLFVGALKDDHDEQSIRDY 141
Query: 301 FQRHGEVTKV-VTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358
FQ G + + + ++GK R F F+ + + K + ++++++G++++V A P+
Sbjct: 142 FQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ-KQHQLNGKMVDVKKALPK 200
Query: 359 TNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAY 391
N + +G G P G G+ G Y
Sbjct: 201 QNDQ-QGGGGGRGG--PGGRAGGNRGNMGGGNY 230
Score = 126 (49.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 49/203 (24%), Positives = 88/203 (43%)
Query: 77 DEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLV 136
++++ S D+ D + P H ++FIGGL ++E+L+ E G + +V ++
Sbjct: 5 NQNQNGNSNGHDDDFPQDSITE-PEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVM 63
Query: 137 KDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI-------RCSMSETN-----N 184
KD + S+GF F+ + + A K G+ + R + N
Sbjct: 64 KDPRTKRSRGFGFITYSHSSMIDEAQKSRPHK-IDGRVVEPKRAVPRQDIDSPNAGATVK 122
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSR 244
+LF+G + E+ R + G VD I ++ D + + RGFAFV + + D
Sbjct: 123 KLFVGALKDDHDEQSIRDYFQHFGNIVD-INIVIDKET-GKKRGFAFVEFDDYDPVD--- 177
Query: 245 QKMTSANFKLDGNTPTVSWAEPK 267
+ + +L+G V A PK
Sbjct: 178 KVVLQKQHQLNGKMVDVKKALPK 200
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 157 (60.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 50/197 (25%), Positives = 90/197 (45%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP-------SRNRGFAFV 232
S+ L I +P++ +++E R + +G V++ +LI+D A + G+ FV
Sbjct: 52 SDAKTNLIINYLPQNMSQEELRSLFSSIGE-VESAKLIRDKMAGMSAHHTLGHSLGYGFV 110
Query: 233 LYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENT 292
Y N + D R T +L T VS+A P S A LY+ LP+
Sbjct: 111 NYVNPS--DAERAINTLNGLRLQSKTIKVSYARPSSDGIKDAN-------LYISGLPKTM 161
Query: 293 TTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVL 350
T K ++++F ++G + ++++ R FI + +RS A +AIKD + G
Sbjct: 162 TQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSKPSGASE 221
Query: 351 EVAL---ARPQTNKRTE 364
+ + A P +K ++
Sbjct: 222 PITVKFAANPNQSKNSQ 238
Score = 145 (56.1 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 43/145 (29%), Positives = 75/145 (51%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSG--------ESKGFAFVAFRSK 155
+ + I LP++ S+E+LR L IGEV L++DK +G S G+ FV + +
Sbjct: 56 TNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNP 115
Query: 156 EVAKRAIDELCSKDFKGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGP 209
A+RAI+ L + KTI+ S + ++ L+I +PK+ T+K + G
Sbjct: 116 SDAERAINTLNGLRLQSKTIKVSYARPSSDGIKDANLYISGLPKTMTQKNVEDMFTQYGR 175
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLY 234
+++ ++ D QA +RG AF+ +
Sbjct: 176 IINS-RILVD-QASGLSRGVAFIRF 198
Score = 101 (40.6 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ ++I GLPK +++++ D+ G + ++ D+ SG S+G AF+ F + A+ AI
Sbjct: 150 ANLYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIK 209
Query: 164 EL 165
+L
Sbjct: 210 DL 211
Score = 81 (33.6 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 274 AAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERS 331
A+++S ++V NL ++ L ++F G VT KV+ S + FGF+
Sbjct: 279 ASSSSSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYE 338
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNK 361
A AI Y + +VL+V+ +++K
Sbjct: 339 EAAMAISSLNGYRLGDKVLQVSFKSSKSHK 368
>ZFIN|ZDB-GENE-000501-1 [details] [associations]
symbol:celf1 "cugbp, Elav-like family member 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-000501-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045495
GeneTree:ENSGT00560000076837 EMBL:CR318601 EMBL:BX571680
IPI:IPI00492280 Ensembl:ENSDART00000123170 Uniprot:E7F304
Length = 535
Score = 155 (59.6 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 50/186 (26%), Positives = 92/186 (49%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSG--ESKGFAFVAFRSKEVAKRAI 162
++F+G +P+ SE+ LR+L EP G V+E+ +++D+ +SKG FV + +++ A A
Sbjct: 55 KMFVGQIPRTWSEDQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEAQ 114
Query: 163 DELCS-KDFKGKTIRCSM----SETNN-----RLFIGNVPKSWTEKEFRKVIEDVGPGVD 212
+ L + K G M SE NN +LF+G + K E + R + G ++
Sbjct: 115 NALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFVGMISKKCNENDIRLMFSPYGQ-IE 173
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG-NTP-TVSWAEPKSTP 270
+++ P SR G AFV + A + + M + ++G ++P V +A+ +
Sbjct: 174 ECRILRGPDGLSR--GCAFVTFTARQMAQSAIKSMHQSQ-TMEGCSSPIVVKFADTQKDK 230
Query: 271 DHSAAA 276
+ A
Sbjct: 231 EQKRIA 236
Score = 136 (52.9 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 40/183 (21%), Positives = 85/183 (46%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKD-PQAPSRNRGFAFVLYYNNACADYS 243
++F+G +P++W+E + R++ E G V I +++D Q P +++G FV YY A +
Sbjct: 55 KMFVGQIPRTWSEDQLRELFEPYG-AVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEA 113
Query: 244 RQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQR 303
+ + + L G + +P + ++A + + L+V + + ++ +F
Sbjct: 114 QNALHNMKI-LPGMHHPIQM-KPADSEKNNAV---EDRKLFVGMISKKCNENDIRLMFSP 168
Query: 304 HGEVTKVVTPPGKSG-KRDFGFIHYAERSSALKAIKDTEKYE-IDGQVLEVALARPQTNK 361
+G++ + G G R F+ + R A AIK + + ++G + + T K
Sbjct: 169 YGQIEECRILRGPDGLSRGCAFVTFTARQMAQSAIKSMHQSQTMEGCSSPIVVKFADTQK 228
Query: 362 RTE 364
E
Sbjct: 229 DKE 231
Score = 75 (31.5 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
L++ +LP+ + L ++F G V KV + + FGF+ Y S+ AI+
Sbjct: 452 LFIYHLPQEFGDQDLLQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSSQAAIQSM 511
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
++I + L+V L R + + +
Sbjct: 512 NGFQIGMKRLKVQLKRSKNDSK 533
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 181 (68.8 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 52/179 (29%), Positives = 81/179 (45%)
Query: 63 GANGSHINTEDAVEDEDKRTASISEDEKE-KHDQLLALPPHGSEVFIGGLPKDASEEDLR 121
G GS +E A D K +H + ++FIGGL D +++DL+
Sbjct: 55 GTEGSSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLK 114
Query: 122 DLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI---RCS 178
D GEV + L D +G S+GF FV F+ E + +D+ K GK I R
Sbjct: 115 DYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK-LNGKVIDPKRAK 173
Query: 179 MSETNN---RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLY 234
+T ++F+G + E++ R+ G V++IEL D + R RGF F+ +
Sbjct: 174 AMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMDNKTNKR-RGFCFITF 230
Score = 137 (53.3 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 59/220 (26%), Positives = 100/220 (45%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVD-TIELIKDPQAPSRNRGFAFVLYYNNACADYS 243
++FIG + T+K+ + G VD T++L DP R+RGF FVL+ + D
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL--DP-ITGRSRGFGFVLFKESESVD-- 152
Query: 244 RQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQR 303
+ M KL+G +PK + VK ++V L +T ++++E F
Sbjct: 153 -KVMDQKEHKLNGKV-----IDPKRAK--AMKTKEPVKKIFVGGLSPDTPEEKIREYFGG 204
Query: 304 HGEVTKVVTP-PGKSGKR-DFGFIHYAERSSALKAIKDTEKYEIDGQV---LEVALARPQ 358
GEV + P K+ KR F FI + E K ++ +KY G ++VA+++ Q
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME--KKYHNVGLSKCEIKVAMSKEQ 262
Query: 359 TNKRTE----GVYSCAA---GVHPSGLPHAGYGSFAGTAY 391
++ + G ++ A G PS + GY ++ Y
Sbjct: 263 YQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGY 302
Score = 123 (48.4 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 36/119 (30%), Positives = 62/119 (52%)
Query: 249 SANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKA--LYVKNLPENTTTKQLKELFQRHGE 306
S K+D + S+P HS AA +Q + +++ L +TT K LK+ F + GE
Sbjct: 63 SEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGE 122
Query: 307 V---TKVVTP-PGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNK 361
V T + P G+S R FGF+ + E S K + D ++++++G+V++ A+ K
Sbjct: 123 VVDCTLKLDPITGRS--RGFGFVLFKESESVDK-VMDQKEHKLNGKVIDPKRAKAMKTK 178
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 181 (68.8 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 55/183 (30%), Positives = 86/183 (46%)
Query: 58 EDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASE 117
E S A G+ I+ EDE +S +H + A ++FIGGL D ++
Sbjct: 57 EGGSAEAEGAKIDASKNEEDEGHSNSS------PRHTEAAAAQREEWKMFIGGLSWDTTK 110
Query: 118 EDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI-- 175
+DL+D GEV + L D +G S+GF FV F+ E + +D+ K GK I
Sbjct: 111 KDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK-LNGKVIDP 169
Query: 176 -RCSMSETNN---RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAF 231
R +T ++F+G + E++ R+ G V++IEL D + R RGF F
Sbjct: 170 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMDNKTNKR-RGFCF 227
Query: 232 VLY 234
+ +
Sbjct: 228 ITF 230
Score = 142 (55.0 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 68/265 (25%), Positives = 117/265 (44%)
Query: 141 SGESKGFAFVAFRSK-EVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKE 199
+G ++G + A +K + +K DE S T + ++FIG + T+K+
Sbjct: 53 AGGTEGGSAEAEGAKIDASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKD 112
Query: 200 FRKVIEDVGPGVD-TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT 258
+ G VD T++L DP R+RGF FVL+ + D + M KL+G
Sbjct: 113 LKDYFSKFGEVVDCTLKL--DP-ITGRSRGFGFVLFKESESVD---KVMDQKEHKLNGKV 166
Query: 259 PTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTP-PGKS 317
+PK + VK ++V L +T ++++E F GEV + P K+
Sbjct: 167 -----IDPKRAK--AMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKT 219
Query: 318 GKR-DFGFIHYAERSSALKAIKDTEKYEIDGQV---LEVALARPQTNKRTE----GVYSC 369
KR F FI + E K ++ +KY G ++VA+++ Q ++ + G ++
Sbjct: 220 NKRRGFCFITFKEEEPVKKIME--KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAG 277
Query: 370 AA---GVHPSGLPHAGYGSFAGTAY 391
A G PS + GY ++ Y
Sbjct: 278 RARGRGGGPSQNWNQGYSNYWNQGY 302
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 162 (62.1 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 48/174 (27%), Positives = 85/174 (48%)
Query: 174 TIRCSMS-ETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRN 226
TI CS E+NN L + +P++ T++E + + +G +++ +L++D ++
Sbjct: 49 TINCSSPVESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRDKITEGQS 107
Query: 227 RGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVK 286
G+ FV Y + D + T +L T VS+A P S A LYV
Sbjct: 108 LGYGFVNYIDPK--DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-------LYVS 158
Query: 287 NLPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
LP+ T K+L++LF ++G + ++++ R GFI + +R A +AIK
Sbjct: 159 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 212
Score = 149 (57.5 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 48/180 (26%), Positives = 91/180 (50%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDK-DSGESKGFAFVAFRSKEVAKRAI 162
+ + + LP++ ++E+L+ L IGE+ LV+DK G+S G+ FV + + A++AI
Sbjct: 66 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAI 125
Query: 163 DELCSKDFKGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
+ L + KTI+ S + ++ L++ +PK+ T+KE ++ G + T +
Sbjct: 126 NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRI 184
Query: 217 IKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT-P-TVSWAE-PKSTPDHS 273
+ D Q +RG F+ + A+ + + + K G T P TV +A P +H+
Sbjct: 185 LVD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ--KPPGATEPITVKFANNPSQKVNHT 241
Score = 76 (31.8 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
++V NL + L ++F G VT KV+ + + FGF+ A AI
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 341 EKYEIDGQVLEVALARPQTNK 361
Y + +VL+V+ +T+K
Sbjct: 368 NGYRLGDRVLQVSFKTSKTHK 388
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 192 (72.6 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 70/276 (25%), Positives = 125/276 (45%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P + +++G L +E L +L IG V + + +D + S G+A+V + + +
Sbjct: 57 PQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGE 116
Query: 160 RAIDELCSKDFKGKTIRCSMSETNNRLFI---GNV-PKSWTEKEFRKVIEDVGPGVDTIE 215
+A++EL KG+ R S+ + L GNV K+ K + D I
Sbjct: 117 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 176
Query: 216 LIKDPQAPSRN-RGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
K Q + N +G+ FV Y + A + + + L+ V PK D +
Sbjct: 177 SCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNG--MLLNEKKVYVGHHIPKK--DRQS 232
Query: 275 AAASQVKA----LYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGK-RDFGFIHYA 328
++KA +YVKN+ T + + LF+++G+VT + ++GK R FGF+++
Sbjct: 233 KF-DEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFT 291
Query: 329 ERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ + E GQ L V A+ + + E
Sbjct: 292 SHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEE 327
Score = 141 (54.7 bits), Expect = 2.4e-09, Sum P(3) = 2.4e-09
Identities = 27/89 (30%), Positives = 54/89 (60%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+D + K D++ A + + +++ + + ++++ R L E G+V L +D+++G+S+G
Sbjct: 228 KDRQSKFDEMKA---NFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRG 284
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
F FV F S E A +A+ EL K+F G+ +
Sbjct: 285 FGFVNFTSHEDASKAVQELNEKEFHGQNL 313
Score = 137 (53.3 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 57/192 (29%), Positives = 87/192 (45%)
Query: 168 KDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNR 227
KD + K + TN +++ N+ T+ EFR + E G V + L +D Q ++R
Sbjct: 228 KDRQSKFDEMKANFTN--IYVKNINPEVTDDEFRTLFEKYGD-VTSSSLARD-QETGKSR 283
Query: 228 GFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH----SAAAASQVKA- 282
GF FV + ++ A + Q++ F G V A+ K + S AA Q KA
Sbjct: 284 GFGFVNFTSHEDASKAVQELNEKEFH--GQNLYVGRAQKKHEREEELRKSYEAARQEKAS 341
Query: 283 ------LYVKNLPENTTTKQLKELFQRHGEVT--KV----VTPPGKSGKRDFGFIHYAER 330
LY+KNL + ++L++LF G +T KV +T PG+ G+ G E
Sbjct: 342 KYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITEPGEEGESKEG-----EE 396
Query: 331 SSALKAIKDTEK 342
S K K EK
Sbjct: 397 SEKNKENKPEEK 408
Score = 76 (31.8 bits), Expect = 2.4e-09, Sum P(3) = 2.4e-09
Identities = 22/79 (27%), Positives = 41/79 (51%)
Query: 286 KNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEI 345
+N PE K ++ GE +K + GKS + FGF+ +A A KA+ + + +
Sbjct: 402 ENKPEEKEGDDSKPE-EKEGEDSKSKSKLGKS--KGFGFVCFANPDDATKAVAEMNQRMV 458
Query: 346 DGQVLEVALARPQTNKRTE 364
+ + L VALA+ + ++ +
Sbjct: 459 NNKPLYVALAQRKDVRKNQ 477
Score = 38 (18.4 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 407 QQPMIYGRGQMPAGM 421
Q P+ YG G P M
Sbjct: 505 QAPVFYGPGSQPGFM 519
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 177 (67.4 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 53/221 (23%), Positives = 98/221 (44%)
Query: 54 ETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPH--GSEVFIGGL 111
E + E +SP G+ + A + DQ+ A ++F+GGL
Sbjct: 21 EAAPEGESPAGTGTGVA---AGAGGGSAAPQAGNQNGAEGDQINASKNEEDAGKMFVGGL 77
Query: 112 PKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE----LCS 167
D S++DL+D GEV + + D ++G S+GF F+ F+ ++ +D+ L
Sbjct: 78 SWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQKEHRLDG 137
Query: 168 KDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNR 227
+ K + ++F+G + TE++ R+ + G ++ IEL DP++ R R
Sbjct: 138 RVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE-IEAIELPMDPKSNKR-R 195
Query: 228 GFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPK 267
GF F+ + +K+ F + G+ + A+PK
Sbjct: 196 GFVFITFKEEEPV----KKVLEKKFHTISGSKCEIKVAQPK 232
Score = 155 (59.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 54/222 (24%), Positives = 100/222 (45%)
Query: 171 KGKTIRCSMSETN-NRLFIGNVPKSWTEKEFRKVIEDVGPGVD-TIELIKDPQAPSRNRG 228
+G I S +E + ++F+G + ++K+ + G VD TI++ DP R+RG
Sbjct: 56 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM--DPNT-GRSRG 112
Query: 229 FAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNL 288
F F+L+ + + + + +LDG +PK A VK ++V L
Sbjct: 113 FGFILFKDATSVE---KVLDQKEHRLDGRV-----IDPKKA---MAMKKDPVKKIFVGGL 161
Query: 289 PENTTTKQLKELFQRHGEVTKVVTP--PGKSGKRDFGFIHYAERSSALKAIKDTEKYEID 346
T ++++E F GE+ + P P + +R F FI + E +K + + + + I
Sbjct: 162 NPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEP-VKKVLEKKFHTIS 220
Query: 347 GQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAG 388
G E+ +A+P+ + + S G G +G G +G
Sbjct: 221 GSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGSG 262
>UNIPROTKB|F1RPR6 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 OMA:THVQTAA
EMBL:CU914319 Ensembl:ENSSSCT00000017300 Uniprot:F1RPR6
Length = 375
Score = 181 (68.8 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 37/127 (29%), Positives = 69/127 (54%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ ++I GLP + +++DL LC+P G++ + DK + + KG+ FV F S A++A+
Sbjct: 29 TNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVS 88
Query: 164 ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
L + + + + + N L+I N+P S E+E +++ G + T +++D
Sbjct: 89 ALKASGVQAQMAKQQEQDPTN-LYISNLPLSMDEQELENMLKPFGQVIST-RILRDSSGT 146
Query: 224 SRNRGFA 230
SR GFA
Sbjct: 147 SRGVGFA 153
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 181 (68.8 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 67/272 (24%), Positives = 122/272 (44%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+++G L D +E+ L P G + + +D + G+ +V FR A+ A++ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 166 CSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
GK R S+ ++RL FI N+ KS + + G + + +++
Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFG-NILSCKVV 138
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
D ++G+A+V + + A A+ + M N V K + +A
Sbjct: 139 CDDNG---SKGYAYVHFDSLAAANRAIWHMNGVRL----NNRQVYVGRFKFPEERAAEVR 191
Query: 278 SQVKA----LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSS 332
++ +A ++VKN+ ++ ++LKELF +G V SGK + FGF+ Y +
Sbjct: 192 TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEA 251
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ D IDG+VL V A+ + + E
Sbjct: 252 AQKAVLDLHGKSIDGKVLYVGRAQKKIERLAE 283
Score = 114 (45.2 bits), Expect = 0.00099, P = 0.00099
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 104 SEVFIGGLPKDASEEDLRDL-CEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
+ VF+ + D +E L++L CE G V +++D SG+SKGF FV + + E A++A+
Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCE-YGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAV 256
Query: 163 DELCSKDFKGKTI 175
+L K GK +
Sbjct: 257 LDLHGKSIDGKVL 269
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 180 (68.4 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 54/189 (28%), Positives = 83/189 (43%)
Query: 53 AETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKE-KHDQLLALPPHGSEVFIGGL 111
A T S G G +E A D K +H + ++FIGGL
Sbjct: 45 AGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGL 104
Query: 112 PKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFK 171
D +++DL+D GEV + L D +G S+GF FV F+ E + +D+ K
Sbjct: 105 SWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK-LN 163
Query: 172 GKTI---RCSMSETNN---RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSR 225
GK I R +T ++F+G + E++ R+ G V++IEL D + R
Sbjct: 164 GKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMDNKTNKR 222
Query: 226 NRGFAFVLY 234
RGF F+ +
Sbjct: 223 -RGFCFITF 230
Score = 138 (53.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 67/265 (25%), Positives = 117/265 (44%)
Query: 141 SGESKGFAFVAFRSK-EVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKE 199
SG ++G + + +K + +K DE S + + ++FIG + T+K+
Sbjct: 53 SGGTEGGSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKD 112
Query: 200 FRKVIEDVGPGVD-TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT 258
+ G VD T++L DP R+RGF FVL+ + D + M KL+G
Sbjct: 113 LKDYFSKFGEVVDCTLKL--DP-ITGRSRGFGFVLFKESESVD---KVMDQKEHKLNGKV 166
Query: 259 PTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTP-PGKS 317
+PK + VK ++V L +T ++++E F GEV + P K+
Sbjct: 167 -----IDPKRAK--AMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKT 219
Query: 318 GKR-DFGFIHYAERSSALKAIKDTEKYEIDGQV---LEVALARPQTNKRTE----GVYSC 369
KR F FI + E K ++ +KY G ++VA+++ Q ++ + G ++
Sbjct: 220 NKRRGFCFITFKEEEPVKKIME--KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAG 277
Query: 370 AA---GVHPSGLPHAGYGSFAGTAY 391
A G PS + GY ++ Y
Sbjct: 278 RARGRGGGPSQNWNQGYSNYWNQGY 302
>UNIPROTKB|E2RJG5 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:MQHVAAF EMBL:AAEX03016277
EMBL:AAEX03016278 Ensembl:ENSCAFT00000028069 Uniprot:E2RJG5
Length = 427
Score = 145 (56.1 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 39/151 (25%), Positives = 81/151 (53%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+G +P+ E+DL+ L E G ++E+ ++KD+ +G KG AF+ + +++ A +A
Sbjct: 8 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 67
Query: 165 LCS-KDFKGKT----IRCSMSE---TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
L K G ++ + SE + +LF+G + K E++ R++ + G ++ +
Sbjct: 68 LHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGH-IEECTV 126
Query: 217 IKDPQAPSRNRGFAFVLYYNNACADYSRQKM 247
++ P S+ G AFV + + A + Q +
Sbjct: 127 LRSPDGTSK--GCAFVKFGSQGEAQAAIQSL 155
Score = 81 (33.6 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 30/107 (28%), Positives = 49/107 (45%)
Query: 266 PKST--PDHSAAAASQVKA------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPG 315
P ST P S+A Q + L++ +LP+ +L + F G V KV
Sbjct: 319 PVSTAFPQQSSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRA 378
Query: 316 KSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR 362
+ + FGF+ + +SA AI+ ++I + L+V L RP+ R
Sbjct: 379 TNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANR 425
>UNIPROTKB|A6H776 [details] [associations]
symbol:BRUNOL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0090394 "negative regulation of excitatory postsynaptic
membrane potential" evidence=IEA] [GO:0048026 "positive regulation
of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381 CTD:56853
OMA:EDSEKNG EMBL:DAAA02056370 EMBL:DAAA02056371 EMBL:DAAA02056372
EMBL:DAAA02056373 EMBL:DAAA02056374 EMBL:DAAA02056375
EMBL:DAAA02056376 EMBL:DAAA02056377 EMBL:DAAA02056378 EMBL:BC146142
IPI:IPI00907335 RefSeq:NP_001092538.1 UniGene:Bt.62140 SMR:A6H776
Ensembl:ENSBTAT00000006498 GeneID:535177 KEGG:bta:535177
InParanoid:A6H776 NextBio:20876649 Uniprot:A6H776
Length = 475
Score = 167 (63.8 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 54/201 (26%), Positives = 102/201 (50%)
Query: 45 NDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGS 104
N + + TS SPG+ G H+N + ++I + HD +
Sbjct: 10 NGQADNASLSTSGLGSSPGSAG-HMN---GLSHSPGNPSTIPMKD---HDAI-------- 54
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++FIG +P++ E+DL+ L E G+++E+ ++KD+ +G KG AF+ + +E A +A
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114
Query: 165 LCS-KDFKG--KTIRCSMSETNNR----LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L K G + I+ +++ +R LF+G + K +E + R++ E G ++ ++
Sbjct: 115 LHEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLNKQQSEDDVRRLFEAFG-NIEECTIL 173
Query: 218 KDPQAPSRNRGFAFVLYYNNA 238
+ P S+ G AFV Y ++A
Sbjct: 174 RGPDGNSK--GCAFVKYSSHA 192
Score = 122 (48.0 bits), Expect = 0.00018, P = 0.00018
Identities = 49/212 (23%), Positives = 92/212 (43%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSR 244
+LFIG +P++ EK+ + + E+ G + + ++KD + ++G AF+ Y A
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGK-IYELTVLKD-RFTGMHKGCAFLTYCERESA-LKA 111
Query: 245 QKMTSANFKLDG-NTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQ 302
Q L G N P V A+ +S D + L+V L + + ++ LF+
Sbjct: 112 QSALHEQKTLPGMNRPIQVKPADSESRGD---------RKLFVGMLNKQQSEDDVRRLFE 162
Query: 303 RHGEVTKVVTPPGKSGK-RDFGFIHY---AERSSALKAIKDTEKYEIDGQVLEVALA--- 355
G + + G G + F+ Y AE +A+ A+ ++ L V A
Sbjct: 163 AFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTD 222
Query: 356 RPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFA 387
+ +T +R + + +P +P YG++A
Sbjct: 223 KERTMRRMQQMAGQMGMFNPMAIPFGAYGAYA 254
Score = 105 (42.0 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+G L K SE+D+R L E G + E +++ D G SKG AFV + S A+ AI+
Sbjct: 142 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAINA 200
Query: 165 L 165
L
Sbjct: 201 L 201
Score = 58 (25.5 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 322 FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR 362
FGF+ + +SA AI+ ++I + L+V L RP+ R
Sbjct: 433 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANR 473
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 161 (61.7 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 57/187 (30%), Positives = 86/187 (45%)
Query: 176 RCSMS-ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLY 234
R SM E +LFIG + T++ R E G D + +++DP R+RGF FV Y
Sbjct: 1 RDSMEPEQVRKLFIGGLSFETTDESLRSHFEQWGTLTDCV-VMRDPNT-KRSRGFGFVTY 58
Query: 235 YNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---STPDHSAAAASQVKALYVKNLPEN 291
A + M + K+DG EPK S D A ++V + E+
Sbjct: 59 ---ATVEEVDAAMNARPHKVDGRV-----VEPKRAVSIEDSQRPGAYLNMKIFVGAIKED 110
Query: 292 TTTKQLKELFQRHG--EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYE-IDGQ 348
T L++ F ++G EV ++VT G KR F F+ + +R S K + +KY ++G
Sbjct: 111 TEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIV--IQKYHTVNGH 168
Query: 349 VLEVALA 355
EV A
Sbjct: 169 NCEVRKA 175
Score = 126 (49.4 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 38/153 (24%), Positives = 72/153 (47%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P ++FIGGL + ++E LR E G + + +++D ++ S+GF FV + + E
Sbjct: 6 PEQVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 65
Query: 160 RAIDELCSKDFKGKTIR----CSMSET-------NNRLFIGNVPKSWTEKEFRKVIEDVG 208
A++ K G+ + S+ ++ N ++F+G + + E R G
Sbjct: 66 AAMNARPHK-VDGRVVEPKRAVSIEDSQRPGAYLNMKIFVGAIKEDTEEHHLRDYFGQYG 124
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
+ IE++ D + + RGFAFV + + D
Sbjct: 125 K-TEVIEIVTD-RGSGKKRGFAFVTFDDRDSVD 155
>UNIPROTKB|A1L544 [details] [associations]
symbol:TNRC4 "Trinucleotide repeat containing 4"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 UniGene:Bt.18201 HOVERGEN:HBG002295
EMBL:DAAA02007247 EMBL:BT029831 IPI:IPI00906974 SMR:A1L544
Ensembl:ENSBTAT00000056432 HOGENOM:HOG000220928 Uniprot:A1L544
Length = 139
Score = 161 (61.7 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 38/133 (28%), Positives = 74/133 (55%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
P ++F+G +P+ E+DL+ + E G +FE+ ++KDK +G KG AF+ + +++ A +
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
Query: 161 AIDELCS-KDFKG--KTIRCSMSETNNR-----LFIGNVPKSWTEKEFRKVIEDVGPGVD 212
A L K G + I+ +++ +R LF+G + K T+++ RK+ E G +D
Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-ID 122
Query: 213 TIELIKDPQAPSR 225
+++ P S+
Sbjct: 123 ECTVLRGPDGTSK 135
>UNIPROTKB|Q3ZBP3 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00630000089747 EMBL:BC103186 IPI:IPI00696485
RefSeq:NP_001030438.1 UniGene:Bt.44980 UniGene:Bt.91245 HSSP:P29558
ProteinModelPortal:Q3ZBP3 SMR:Q3ZBP3 PRIDE:Q3ZBP3
Ensembl:ENSBTAT00000006826 GeneID:526135 KEGG:bta:526135 CTD:5937
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
InParanoid:Q3ZBP3 OMA:THVQTAA OrthoDB:EOG469QV2 NextBio:20874311
Uniprot:Q3ZBP3
Length = 403
Score = 181 (68.8 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 37/127 (29%), Positives = 69/127 (54%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ ++I GLP + +++DL LC+P G++ + DK + + KG+ FV F S A++A+
Sbjct: 62 TNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVS 121
Query: 164 ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
L + + + + + N L+I N+P S E+E +++ G + T +++D
Sbjct: 122 ALKASGVQAQMAKQQEQDPTN-LYISNLPLSMDEQELENMLKPFGQVIST-RILRDSSGT 179
Query: 224 SRNRGFA 230
SR GFA
Sbjct: 180 SRGVGFA 186
>UNIPROTKB|E2RM13 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 EMBL:AAEX03017702
EMBL:AAEX03017703 Ensembl:ENSCAFT00000015804 Uniprot:E2RM13
Length = 404
Score = 181 (68.8 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 37/127 (29%), Positives = 69/127 (54%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ ++I GLP + +++DL LC+P G++ + DK + + KG+ FV F S A++A+
Sbjct: 60 TNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVS 119
Query: 164 ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
L + + + + + N L+I N+P S E+E +++ G + T +++D
Sbjct: 120 ALKASGVQAQMAKQQEQDPTN-LYISNLPLSMDEQELENMLKPFGQVIST-RILRDSSGT 177
Query: 224 SRNRGFA 230
SR GFA
Sbjct: 178 SRGVGFA 184
>UNIPROTKB|Q3MHF0 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828
HOVERGEN:HBG051404 OMA:DIWVVKD GeneTree:ENSGT00680000100059
OrthoDB:EOG43R3MJ EMBL:DAAA02004143 EMBL:BC105262 IPI:IPI00711970
RefSeq:NP_001124225.1 UniGene:Bt.48322 STRING:Q3MHF0
Ensembl:ENSBTAT00000008111 GeneID:535331 KEGG:bta:535331
InParanoid:Q3MHF0 NextBio:20876704 Uniprot:Q3MHF0
Length = 474
Score = 146 (56.5 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 44/151 (29%), Positives = 80/151 (52%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP+ S +F+ + K SE LR+ P GE+ ++ +V+DK + ESKG AFV F A
Sbjct: 23 PPN-SRIFLV-ISKYTSESVLRERFSPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQAC 80
Query: 160 RAIDEL---CSKDFKGKTIRCSMSETNN-------------RLFIGNVPKSWTEKEFRKV 203
RA++E+ C K I+ ++++ + R+F+ +PKS+TE++ R+
Sbjct: 81 RAMEEMHGQCLTPSDTKPIKVFIAQSRSSGSHRDVEDEELTRIFV-MIPKSYTEEDLREK 139
Query: 204 IEDVGPGVDTIELIKDPQAPSRNRGFAFVLY 234
+ G ++ +IK+ + ++G +V Y
Sbjct: 140 FKVFGD-IEYCSIIKN-KVTGESKGLGYVRY 168
Score = 106 (42.4 bits), Expect = 3.7e-11, Sum P(3) = 3.7e-11
Identities = 21/68 (30%), Positives = 41/68 (60%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +F+ +PK +EEDLR+ + G++ ++K+K +GESKG +V + A +AI+
Sbjct: 121 TRIFVM-IPKSYTEEDLREKFKVFGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIE 179
Query: 164 ELCSKDFK 171
C + ++
Sbjct: 180 N-CDRSYR 186
Score = 89 (36.4 bits), Expect = 3.7e-11, Sum P(3) = 3.7e-11
Identities = 30/110 (27%), Positives = 55/110 (50%)
Query: 188 IGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKM 247
+ VP +TE++ + D+ PG++ E+ +DP + N G V Y+N A A Y++ K+
Sbjct: 251 VSRVP--FTEEQLFSIF-DIVPGLEYCEVQRDPYS---NYGHGVVQYFNVASAIYAKYKL 304
Query: 248 TSANFKLDGNTPTVSWAEPKSTP-DHSAAAASQVKALYVKNLPENTTTKQ 296
+ GN VS+ + S D A+Q+ A + ++ N ++Q
Sbjct: 305 HGFQYP-PGNRIGVSFIDDGSNATDLLRKMATQMVAAQLASIVWNNPSQQ 353
Score = 74 (31.1 bits), Expect = 3.7e-11, Sum P(3) = 3.7e-11
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEK 342
L++ P L+++F R G + +V GK+ G+ YA+R SA AI
Sbjct: 392 LFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSGKN----VGYAKYADRLSANDAITTLHG 447
Query: 343 YEIDGQVLEVALA---RPQTNKR 362
++G L+V LA R ++NKR
Sbjct: 448 KILNGVRLKVMLADSPREESNKR 470
>UNIPROTKB|E2RMT9 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 OMA:THVQTAA
EMBL:AAEX03017702 EMBL:AAEX03017703 Ensembl:ENSCAFT00000015788
NextBio:20854045 Uniprot:E2RMT9
Length = 420
Score = 181 (68.8 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 37/127 (29%), Positives = 69/127 (54%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ ++I GLP + +++DL LC+P G++ + DK + + KG+ FV F S A++A+
Sbjct: 63 TNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVS 122
Query: 164 ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
L + + + + + N L+I N+P S E+E +++ G + T +++D
Sbjct: 123 ALKASGVQAQMAKQQEQDPTN-LYISNLPLSMDEQELENMLKPFGQVIST-RILRDSSGT 180
Query: 224 SRNRGFA 230
SR GFA
Sbjct: 181 SRGVGFA 187
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 176 (67.0 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 49/180 (27%), Positives = 88/180 (48%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSR 244
+LF+GN+P + + E G V+ E+I + ++RGF FV A+ +
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGT-VEISEVIYNRDT-DQSRGFGFVTMSTVEEAEKAV 171
Query: 245 QKMTSANFKLDGNTPTVSWAEPK-STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQR 303
+K S F+++G TV+ A P+ S P+ +YV NLP + + +L+ LF
Sbjct: 172 EKFNS--FEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSE 229
Query: 304 HGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNK 361
HG+V +VV+ R FGF+ + + AI + ++G+ ++V +A +T +
Sbjct: 230 HGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289
Score = 160 (61.4 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 55/213 (25%), Positives = 98/213 (46%)
Query: 72 EDAVEDEDKRTASISEDEK-EKHDQL-LALPPHGSEVFIGGLPKDASEEDLRDLCEPIGE 129
E+ ED S++ DE E D + PP +++F+G LP D + L L E G
Sbjct: 79 EEEGEDGSIGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGT 138
Query: 130 VFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI-------RCSMSET 182
V ++ ++D+ +S+GF FV + E A++A+++ S + G+ + R S E
Sbjct: 139 VEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPER 198
Query: 183 NNR-------LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYY 235
R +++GN+P ++ + G VD ++ D + R+RGF FV
Sbjct: 199 QPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDA-RVVSDRET-GRSRGFGFVQMS 256
Query: 236 NNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
N + + + N L+G V+ AE ++
Sbjct: 257 NENEVNVAIAALDGQN--LEGRAIKVNVAEERT 287
Score = 115 (45.5 bits), Expect = 0.00045, P = 0.00045
Identities = 30/101 (29%), Positives = 53/101 (52%)
Query: 283 LYVKNLPENTTTKQLKELFQRHG--EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
L+V NLP + ++ L LF++ G E+++V+ R FGF+ + A KA++
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 341 EKYEIDGQVLEVALARPQTNK--RTEGVYSCAAGVHPSGLP 379
+E++G+ L V A P+ ++ R VY A ++ LP
Sbjct: 175 NSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLP 215
Score = 114 (45.2 bits), Expect = 0.00058, P = 0.00058
Identities = 23/80 (28%), Positives = 43/80 (53%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+++G LP D L L G+V + +V D+++G S+GF FV ++ AI L
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268
Query: 166 CSKDFKGKTIRCSMSETNNR 185
++ +G+ I+ +++E R
Sbjct: 269 DGQNLEGRAIKVNVAEERTR 288
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 156 (60.0 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 38/137 (27%), Positives = 75/137 (54%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++E+L+ L IGE+ LV+DK +G+S G+ FV + + A++AI+
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 127
Query: 164 ELCSKDFKGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L++ +PK+ T+KE ++ G + T ++
Sbjct: 128 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 186
Query: 218 KDPQAPSRNRGFAFVLY 234
D Q +RG F+ +
Sbjct: 187 VD-QVTGISRGVGFIRF 202
Score = 156 (60.0 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 51/193 (26%), Positives = 93/193 (48%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+TN L + +P++ T++E + + +G +++ +L++D + ++ G+ FV Y +
Sbjct: 66 SKTN--LIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPK- 120
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
D + T +L T VS+A P S A LYV LP+ T K+L++
Sbjct: 121 -DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-------LYVSGLPKTMTQKELEQ 172
Query: 300 LFQRHGEV-TKVVTPPGKSG-KRDFGFIHYAERSSALKAIKDTEKYEIDG--QVLEVALA 355
LF ++G + T + +G R GFI + +R A +AIK + G + + V A
Sbjct: 173 LFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 232
Query: 356 RPQTNKRTEGVYS 368
+ K + + S
Sbjct: 233 NNPSQKTNQAILS 245
Score = 92 (37.4 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++ GLPK ++++L L G + ++ D+ +G S+G F+ F + A+ AI
Sbjct: 154 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 213
Query: 164 ELCSKDFKGKTIRCSMSETNN 184
L + G T ++ NN
Sbjct: 214 GLNGQKPPGATEPITVKFANN 234
Score = 66 (28.3 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
++V NL + L ++F G VT KV+ + + FGF+ A AI
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 341 EKYEIDGQVLEV 352
Y + +VL+V
Sbjct: 368 NGYRLGDRVLQV 379
>UNIPROTKB|Q4R535 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9541
"Macaca fascicularis" [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 GO:GO:0048026 EMBL:AB169709
ProteinModelPortal:Q4R535 SMR:Q4R535 Uniprot:Q4R535
Length = 474
Score = 166 (63.5 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 42/141 (29%), Positives = 81/141 (57%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++FIG +P++ E+DL+ L E G+++E+ ++KD+ +G KG AF+ + +E A +A
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114
Query: 165 LCS-KDFKG--KTIRCSMSETNNR----LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L K G + I+ +++ +R LF+G + K +E + R++ E G ++ ++
Sbjct: 115 LHEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLNKQQSEDDVRRLFEAFG-NIEECTIL 173
Query: 218 KDPQAPSRNRGFAFVLYYNNA 238
+ P S+ G AFV Y ++A
Sbjct: 174 RGPDGNSK--GCAFVKYSSHA 192
Score = 122 (48.0 bits), Expect = 0.00018, P = 0.00018
Identities = 49/212 (23%), Positives = 92/212 (43%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSR 244
+LFIG +P++ EK+ + + E+ G + + ++KD + ++G AF+ Y A
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGK-IYELTVLKD-RFTGMHKGCAFLTYCERESA-LKA 111
Query: 245 QKMTSANFKLDG-NTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQ 302
Q L G N P V A+ +S D + L+V L + + ++ LF+
Sbjct: 112 QSALHEQKTLPGMNRPIQVKPADSESRGD---------RKLFVGMLNKQQSEDDVRRLFE 162
Query: 303 RHGEVTKVVTPPGKSGK-RDFGFIHY---AERSSALKAIKDTEKYEIDGQVLEVALA--- 355
G + + G G + F+ Y AE +A+ A+ ++ L V A
Sbjct: 163 AFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTD 222
Query: 356 RPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFA 387
+ +T +R + + +P +P YG++A
Sbjct: 223 KERTMRRMQQMAGQMGMFNPMAIPFGAYGAYA 254
Score = 105 (42.0 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+G L K SE+D+R L E G + E +++ D G SKG AFV + S A+ AI+
Sbjct: 142 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAINA 200
Query: 165 L 165
L
Sbjct: 201 L 201
Score = 58 (25.5 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 322 FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR 362
FGF+ + +SA AI+ ++I + L+V L RP+ R
Sbjct: 432 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANR 472
>FB|FBgn0260456 [details] [associations]
symbol:CG4806 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE013599 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:Q9V535
GeneTree:ENSGT00550000074976 KO:K14573 OMA:MHALECL ChiTaRS:CG33228
FlyBase:FBgn0260456 EMBL:BT023833 RefSeq:NP_611955.2
UniGene:Dm.2200 SMR:Q9W124 STRING:Q9W124 EnsemblMetazoa:FBtr0072332
GeneID:37948 KEGG:dme:Dmel_CG4806 UCSC:CG4806-RA InParanoid:Q9W124
GenomeRNAi:37948 NextBio:806205 Uniprot:Q9W124
Length = 657
Score = 161 (61.7 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 40/122 (32%), Positives = 62/122 (50%)
Query: 39 DGNVKQNDED--EEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQL 96
D V + DE E+ DAE+ ++++ G + N ED E++D+ + + ++ Q+
Sbjct: 163 DAEVGKEDESSGEDSDAESGEDEEDSGESEDEENDEDHKENKDELKSKLDIKNVKREKQI 222
Query: 97 LALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
G VFI +P DA + DLR C G V + + SG SKG AFV F++KE
Sbjct: 223 SNDVQEGCTVFIKNVPFDAEDADLRKACRKFGLVSYAIINRQAVSGHSKGTAFVKFKAKE 282
Query: 157 VA 158
A
Sbjct: 283 SA 284
Score = 68 (29.0 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 47/198 (23%), Positives = 88/198 (44%)
Query: 182 TNNRLFIGNVPKSWTEKEFRKV-IEDVGPGVDTIELIKD----PQAPS-RNRGFAFVLYY 235
+ NRL I N+P+++ ++ +++ + G ++++ P+ P +++GF F+ +
Sbjct: 376 SRNRLSIHNLPQNYDNEKLKQMALTYTGFRPHECRVMREHKVTPEHPQGKSKGFGFLSF- 434
Query: 236 NNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA--AASQVKALYVKNLPENTT 293
D + Q+ +A KL+ N P + + + S A ++K + +N
Sbjct: 435 -----D-THQRALAALRKLNNN-PNIFGTQSRPIVAFSIEDRAVHKIKEKRTERSKQNNP 487
Query: 294 TKQ-----LKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI-KDTEKYE- 344
T Q KE Q R+G+ TK P + + I E S A KA K EK +
Sbjct: 488 TYQNKQQERKERRQQKRNGQETKTPVPQADNKSKLQKHIKKLEASRAAKAEGKVAEKKQL 547
Query: 345 --IDGQVLEVALARPQTN 360
+ G + A A+P T+
Sbjct: 548 SDVQGDFVGTA-AKPGTS 564
Score = 44 (20.5 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 19/98 (19%), Positives = 35/98 (35%)
Query: 266 PKSTPDHSAAAASQVKALYVKNLPE-NTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGF 324
P D+ + +K L + + K+L G+ PG S K
Sbjct: 512 PVPQADNKSKLQKHIKKLEASRAAKAEGKVAEKKQLSDVQGDFVGTAAKPGTSLKMRSKK 571
Query: 325 IHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR 362
+ LK +K ++ + + ++ E LA + N R
Sbjct: 572 KIVEQAKEHLKKVKTEKRKQKNKKIRESHLAERKANNR 609
>DICTYBASE|DDB_G0279639 [details] [associations]
symbol:DDB_G0279639 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
SMART:SM00360 SMART:SM00513 dictyBase:DDB_G0279639 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 Gene3D:1.10.720.30
EMBL:AAFI02000032 eggNOG:NOG135032 RefSeq:XP_641568.1
ProteinModelPortal:Q54WI5 EnsemblProtists:DDB0220678 GeneID:8622143
KEGG:ddi:DDB_G0279639 InParanoid:Q54WI5 OMA:ENTNTNE Uniprot:Q54WI5
Length = 1009
Score = 189 (71.6 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 55/184 (29%), Positives = 95/184 (51%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P S +F+G L D +E L+ + E G + + L+K++ +GE+KG+AF+ +R+K A
Sbjct: 395 IPLADSLLFVGNLGNDVGKEQLKKMFEKHGTIDRIILIKNRRTGENKGYAFIDYRTKLQA 454
Query: 159 KRAIDELCSKDFKGKTIR------CSMSET--NNRLFIGNVPKSWTEKEF-RKVIEDVGP 209
A L S F +T+R C+ E+ + +F+ +P+S+ + RKV G
Sbjct: 455 STAKSSLGSIVFNRRTLRVDWAENCNTMESMHSKTIFVDRLPRSFADVPILRKVFSPFGK 514
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST 269
+ ++ P + RGFAF+ Y N A+ +++ M + K G V++A P S
Sbjct: 515 -IKDCNVV--PNYYGQPRGFAFIDYNNVEDAEKAQRMMNEKDLK--GYKIRVNFANP-SK 568
Query: 270 PDHS 273
P HS
Sbjct: 569 PGHS 572
Score = 187 (70.9 bits), Expect = 7.3e-11, Sum P(3) = 7.3e-11
Identities = 78/320 (24%), Positives = 140/320 (43%)
Query: 53 AETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQL-------LALPPHGS- 104
A+ +K+D + S I + A+++ +K EK++ D L GS
Sbjct: 265 ADENKQDLNSLDVDSSI-VDKAIQEAEKAVTEKMSSEKKREDSLDKTKIQQSIAEMEGSF 323
Query: 105 ----EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
+ I GL +E++L + +G+V + G K FA V + +AK
Sbjct: 324 KKIPSIKITGLNDSLTEKELEEALNEVGKVHTITY-----EGSKKDFAIVQMENHTIAKE 378
Query: 161 AIDELCSKDFKGKTIRCS-MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKD 219
++ SK K T+ + + ++ LF+GN+ +++ +K+ E G +D I LIK+
Sbjct: 379 KLNN--SK-LKNCTLSITDIPLADSLLFVGNLGNDVGKEQLKKMFEKHGT-IDRIILIKN 434
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
+ N+G+AF+ Y A ++ + S F + T V WAE +T + +
Sbjct: 435 RRT-GENKGYAFIDYRTKLQASTAKSSLGSIVF--NRRTLRVDWAENCNTME-----SMH 486
Query: 280 VKALYVKNLPEN-TTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAI 337
K ++V LP + L+++F G++ P G+ R F FI Y A KA
Sbjct: 487 SKTIFVDRLPRSFADVPILRKVFSPFGKIKDCNVVPNYYGQPRGFAFIDYNNVEDAEKAQ 546
Query: 338 KDTEKYEIDGQVLEVALARP 357
+ + ++ G + V A P
Sbjct: 547 RMMNEKDLKGYKIRVNFANP 566
Score = 45 (20.9 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 16/51 (31%), Positives = 21/51 (41%)
Query: 36 VGRDGNVKQN----DEDEEYDAE-TSKEDQSPGANGSHINTEDAVEDEDKR 81
+G D N N DEDE+ + SK S S T DE+K+
Sbjct: 220 LGSDDNNHNNQYSDDEDEDVNNNGESKTSTSTSTTTSTTTTSTPTADENKQ 270
Score = 41 (19.5 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 41 NVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDE 89
N +N E+ + T+ + N +H NT ++ ED+
Sbjct: 166 NTNEN-ENTNINTNTTSSTTTESDNNTHTNTNTNTNTNGNGNSNGDEDQ 213
Score = 38 (18.4 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 45 NDEDEEYDAETSKEDQSPGANG-SHINTEDAVEDEDKRTASISEDEKEK 92
+D++ + + ED+ NG S +T + T++ + DE ++
Sbjct: 222 SDDNNHNNQYSDDEDEDVNNNGESKTSTSTSTTTSTTTTSTPTADENKQ 270
Score = 37 (18.1 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 372 GVHPSGLPHAGYGSFAG 388
GV P H G GS G
Sbjct: 605 GVPPPNSQHFGIGSVGG 621
>UNIPROTKB|E7ETU5 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC092153 EMBL:AC104598 EMBL:AC131754 IPI:IPI00033611
HGNC:HGNC:9907 ChiTaRS:RBMS1 EMBL:AC133105 SMR:E7ETU5
Ensembl:ENST00000409075 Ensembl:ENST00000409289
Ensembl:ENST00000409972 Uniprot:E7ETU5
Length = 370
Score = 179 (68.1 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 37/127 (29%), Positives = 68/127 (53%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ ++I GLP +++DL LC+P G++ + DK + + KG+ FV F S A++A+
Sbjct: 29 TNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVS 88
Query: 164 ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
L + + + + + N L+I N+P S E+E +++ G + T +++D
Sbjct: 89 ALKASGVQAQMAKQQEQDPTN-LYISNLPLSMDEQELENMLKPFGQVIST-RILRDSSGT 146
Query: 224 SRNRGFA 230
SR GFA
Sbjct: 147 SRGVGFA 153
>WB|WBGene00006807 [details] [associations]
symbol:unc-75 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0032224 "positive regulation of
synaptic transmission, cholinergic" evidence=IMP] [GO:0032230
"positive regulation of synaptic transmission, GABAergic"
evidence=IMP] [GO:0016071 "mRNA metabolic process" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0007271 "synaptic
transmission, cholinergic" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0016071 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0032230 GO:GO:0007271 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 GO:GO:0032224 EMBL:Z81473
EMBL:AY342388 PIR:T19347 RefSeq:NP_492958.3 UniGene:Cel.20354
ProteinModelPortal:G5EE68 SMR:G5EE68 IntAct:G5EE68
EnsemblMetazoa:C17D12.2 GeneID:182722 KEGG:cel:CELE_C17D12.2
CTD:182722 WormBase:C17D12.2 OMA:SHAQTEN NextBio:918598
Uniprot:G5EE68
Length = 514
Score = 145 (56.1 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 43/149 (28%), Positives = 77/149 (51%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
P ++F+G +P++ E+DLR L E G+++E ++KDK +G KG AF+ + ++ A R
Sbjct: 26 PDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVR 85
Query: 161 AIDELCS-KDFKG--KTIRCSMSETNNR------------LFIGNVPKSWTEKEFRKVIE 205
L K G + ++ ++T++R LFIG + K +E E R +
Sbjct: 86 CQATLHDQKTLPGMNRAMQVKPADTDSRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFA 145
Query: 206 DVGPGVDTIELIKDPQAPSRNRGFAFVLY 234
G +D + +++ A ++G AFV Y
Sbjct: 146 TFGE-LDEVTVLRG--ADGASKGCAFVKY 171
Score = 99 (39.9 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 40/120 (33%), Positives = 57/120 (47%)
Query: 48 DEEYDAETSKEDQS--PGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSE 105
D + + DQ PG N + + + A D D R AS K+K D +
Sbjct: 81 DSAVRCQATLHDQKTLPGMNRA-MQVKPA--DTDSRPAS----PKDKMDD--------KK 125
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FIG L K SE+++R L GE+ EV +++ D G SKG AFV ++ A AI L
Sbjct: 126 LFIGMLSKQQSEDEVRALFATFGELDEVTVLRGAD-GASKGCAFVKYKHGLDAHMAISAL 184
Score = 82 (33.9 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
L++ +LP+ +L ++F G + KV + + FGF+ Y S+ AI
Sbjct: 431 LFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAITAM 490
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
++I + L+V L RP+ R
Sbjct: 491 NGFQIGMKRLKVQLKRPRNESR 512
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 173 (66.0 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 38/134 (28%), Positives = 71/134 (52%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+GGL D S++DL+D GEV + + D ++G S+GF F+ F+ ++ +D+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 165 ----LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDP 220
L + K + ++F+G + TE++ R+ + G ++ IEL DP
Sbjct: 61 KEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE-IEAIELPMDP 119
Query: 221 QAPSRNRGFAFVLY 234
++ R RGF F+ +
Sbjct: 120 KSNKR-RGFVFITF 132
Score = 129 (50.5 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 42/166 (25%), Positives = 77/166 (46%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVD-TIELIKDPQAPSRNRGFAFVLYYNNACADYS 243
++F+G + ++K+ + G VD TI++ DP R+RGF F+L+ + A +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM--DPNT-GRSRGFGFILFKDAASVE-- 55
Query: 244 RQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQR 303
+ + +LDG +PK A VK ++V L T ++++E F
Sbjct: 56 -KVLDQKEHRLDGRV-----IDPKKA---MAMKKDPVKKIFVGGLNPEATEEKIREYFGE 106
Query: 304 HGEVTKVVTP--PGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDG 347
GE+ + P P + +R F FI + E +K + + + + I G
Sbjct: 107 FGEIEAIELPMDPKSNKRRGFVFITFKEEEP-VKKVLEKKFHTISG 151
Score = 112 (44.5 bits), Expect = 0.00081, P = 0.00080
Identities = 19/60 (31%), Positives = 37/60 (61%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+GGL +A+EE +R+ GE+ + L D S + +GF F+ F+ +E K+ +++
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEK 144
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 177 (67.4 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 46/169 (27%), Positives = 85/169 (50%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+GGL D S++DL+D GEV + + D ++G S+GF F+ F+ ++ +D+
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 165 ----LCSKDFKGKTIRCSMSETNNRLFIGNV-PKSWTEKEFRKVIEDVGPGVDTIELIKD 219
L + K + ++F+G + P+S TE++ R+ + G ++ IEL D
Sbjct: 130 KEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGE-IEAIELPMD 188
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPK 267
P+ R RGF F+ + +K+ F + G+ + A+PK
Sbjct: 189 PKLNKR-RGFVFITFKEEEPV----KKVLEKKFHTVSGSKCEIKVAQPK 232
Score = 161 (61.7 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 56/223 (25%), Positives = 103/223 (46%)
Query: 171 KGKTIRCSMSETN-NRLFIGNVPKSWTEKEFRKVIEDVGPGVD-TIELIKDPQAPSRNRG 228
+G I S +E + ++F+G + ++K+ + G VD TI++ DP R+RG
Sbjct: 55 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM--DPNT-GRSRG 111
Query: 229 FAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNL 288
F F+L+ + A + + + +LDG +PK A VK ++V L
Sbjct: 112 FGFILFKDAASVE---KVLDQKEHRLDGRV-----IDPKKA---MAMKKDPVKKIFVGGL 160
Query: 289 -PENTTTKQLKELFQRHGEVTKVVTP--PGKSGKRDFGFIHYAERSSALKAIKDTEKYEI 345
PE+ T ++++E F GE+ + P P + +R F FI + E +K + + + + +
Sbjct: 161 NPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEP-VKKVLEKKFHTV 219
Query: 346 DGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAG 388
G E+ +A+P+ + + S G G +G G G
Sbjct: 220 SGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGGG 262
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 186 (70.5 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 57/230 (24%), Positives = 103/230 (44%)
Query: 144 SKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSW 195
S G+A+V F+ A+RA+D + KGK +R S+ + +FI N+ KS
Sbjct: 6 SLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSI 65
Query: 196 TEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLD 255
K G + + +++ D ++G+ FV + A+ + +KM D
Sbjct: 66 DNKALYDTFSAFG-NILSCKVVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLLN-D 120
Query: 256 GNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPG 315
+ K A A + +Y+KN E+ ++LK+LF + G V
Sbjct: 121 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 180
Query: 316 KSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+SGK + FGF+ + A KA+ + E++G+ + V A+ + ++TE
Sbjct: 181 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 230
Score = 144 (55.7 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 41/129 (31%), Positives = 63/129 (48%)
Query: 58 EDQSPGANGSHINTEDAVEDE-DKRTASISEDEK----------EKHDQLLALPPHGSEV 106
E+ S G H T++A E +K + D K E+ +L A + V
Sbjct: 89 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 148
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 149 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 207
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 208 GKELNGKQI 216
Score = 38 (18.4 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 407 QQPMIYGRGQMPAGMHMVPMVLP 429
QQP ++ +GQ P M+ P
Sbjct: 488 QQPAVHVQGQEPLTASMLASAPP 510
WARNING: HSPs involving 1060 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.131 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 479 392 0.00095 117 3 11 23 0.48 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1310
No. of states in DFA: 611 (65 KB)
Total size of DFA: 249 KB (2133 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 45.25u 0.11s 45.36t Elapsed: 00:00:02
Total cpu time: 45.31u 0.11s 45.42t Elapsed: 00:00:02
Start: Sat May 11 09:28:54 2013 End: Sat May 11 09:28:56 2013
WARNINGS ISSUED: 2