BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011718
(479 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224130652|ref|XP_002320894.1| predicted protein [Populus trichocarpa]
gi|222861667|gb|EEE99209.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/485 (70%), Positives = 402/485 (82%), Gaps = 11/485 (2%)
Query: 1 MADNTEVEERVDLDEDDYMEEIDDDPEEQLDDDGEVGR---DGNVKQNDEDEEYDAETSK 57
MA+ TE+EERVDL+ED+YMEEIDDD E+QLD+DGE +E E+ E S+
Sbjct: 1 MAEGTEIEERVDLEEDNYMEEIDDDVEDQLDEDGEDDAGDPHAEENVEEEYEDSKTEGSQ 60
Query: 58 EDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASE 117
+DQSP A+ +TE A EDE K TAS++E+EKEKH QLLALPPHGSEVFIGGLP+D E
Sbjct: 61 KDQSPEADRIVADTEPA-EDEQKPTASVNEEEKEKHAQLLALPPHGSEVFIGGLPRDVIE 119
Query: 118 EDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177
++LRDLCEPIGE+FE+ L+KDKDSGESKGFAFVAF+SKEVA++AI+EL SKD+KGKT+RC
Sbjct: 120 DELRDLCEPIGEIFEIRLMKDKDSGESKGFAFVAFKSKEVARKAIEELHSKDYKGKTLRC 179
Query: 178 SMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNN 237
S+SET NRLFIGNVPK+ TE EFRK+IE+VGPGV+ IELIKDPQ P+RNRGFAF+LYYNN
Sbjct: 180 SISETKNRLFIGNVPKNLTEDEFRKIIEEVGPGVEVIELIKDPQTPTRNRGFAFILYYNN 239
Query: 238 ACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQL 297
ACADYSRQKM +ANFKLDG+TPTVSWA+PK TP +AA+SQVKALYVKN+PENT+T+QL
Sbjct: 240 ACADYSRQKMLNANFKLDGHTPTVSWADPKGTPPDHSAASSQVKALYVKNIPENTSTEQL 299
Query: 298 KELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357
K LFQRHG+VTKVV PPGK+GKRDFGFIHYAERSSALKA++D EKYEIDGQVLEV LA+P
Sbjct: 300 KGLFQRHGDVTKVVMPPGKAGKRDFGFIHYAERSSALKAVRDAEKYEIDGQVLEVVLAKP 359
Query: 358 QTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQM 417
Q +K+ + Y AGVHP+ +P Y FAG YGS+ TG GVA + QQP+IYGRG M
Sbjct: 360 QADKKPDAAYPYNAGVHPNPVPLPAYSGFAGNPYGSLGTGFGVA--SSFQQPVIYGRGPM 417
Query: 418 PAGMHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPRRVER--GPGGRG-ASSGGSDGSSGR 474
PAGMHMVPMVLPDGRIGYVLQQPGVQMP PRPRRV+R GP G G A + DG+ GR
Sbjct: 418 PAGMHMVPMVLPDGRIGYVLQQPGVQMPQ--PRPRRVDRNNGPSGPGRAGNSSDDGNRGR 475
Query: 475 RYRPY 479
RYRPY
Sbjct: 476 RYRPY 480
>gi|356573261|ref|XP_003554781.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine
max]
Length = 483
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/491 (67%), Positives = 405/491 (82%), Gaps = 20/491 (4%)
Query: 1 MADNTEVEERVDLDEDDYMEEIDDDPEEQLDDDGEVG-RDGNVKQNDEDEEYD---AETS 56
M++ E++ERVDLDE++YMEE+DDD EEQ+DDDG G + N + + E++EY+ AE
Sbjct: 1 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGVEEENAEGSFEEDEYEDSAAEAG 60
Query: 57 KEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDAS 116
+DQ P A S I TE D++++ + I EDEKEKHD+LLALPPHGSEVFIGGLP+D
Sbjct: 61 GKDQLPEAEKSDIATE--FGDDEQKLSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVC 118
Query: 117 EEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIR 176
E+DLR+LCEP+G++ EV L+KD+D+GE+KG+AFVAF++KEVA++AI+E+ SK+FKGKT+R
Sbjct: 119 EDDLRELCEPMGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQKAIEEIHSKEFKGKTLR 178
Query: 177 CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYN 236
CS+SET +RLFIGNVPK+WTE +FRKV+E VGPGV+TIELIKDPQ PSRNRGFAFVLYYN
Sbjct: 179 CSLSETKHRLFIGNVPKTWTEDDFRKVVEGVGPGVETIELIKDPQNPSRNRGFAFVLYYN 238
Query: 237 NACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQ 296
NACADYSRQKM S++FKLDGNTPTV+WA+PK++PDHS A+SQVKALYVKN+PEN TT+Q
Sbjct: 239 NACADYSRQKMASSSFKLDGNTPTVTWADPKNSPDHS--ASSQVKALYVKNIPENVTTEQ 296
Query: 297 LKELFQRHGEVTKVVTPPGKS-GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355
LKELF+RHGEVTKVV PPGK+ GKRDFGFIHYAERSSALKA+KDTEKYEIDGQ+LEV LA
Sbjct: 297 LKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLA 356
Query: 356 RPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRG 415
+PQ +K+ +G Y+ G+HP+ +PH YG+F+G YGS+ G GVA AG QQPMIYGRG
Sbjct: 357 KPQADKKPDGGYAYNPGLHPNHIPHPAYGNFSGNPYGSLGAGYGVA--AGYQQPMIYGRG 414
Query: 416 QMPAGMHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPRRVERG-------PGGRGASSGGS 468
MPAGM MVPMVLPDGRIGYVLQQPGVQ +P RPRR++R G G SG
Sbjct: 415 PMPAGMQMVPMVLPDGRIGYVLQQPGVQ--VPATRPRRIDRSNGPSGQPGRGGGGGSGND 472
Query: 469 DGSSGRRYRPY 479
+G+ RRYRPY
Sbjct: 473 EGNRSRRYRPY 483
>gi|356506096|ref|XP_003521823.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine
max]
Length = 483
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/491 (67%), Positives = 404/491 (82%), Gaps = 20/491 (4%)
Query: 1 MADNTEVEERVDLDEDDYMEEIDDDPEEQLDDDGEVGRDG-NVKQNDEDEEYD---AETS 56
M++ E++ERVDLDE++YMEE+DDD EEQ+DDDG G + N + + E+ EY+ AE
Sbjct: 1 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEDSAAEAG 60
Query: 57 KEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDAS 116
+DQ P A S I TE D++++ + I EDEKEKHD+LLALPPHGSEVFIGGLP+D
Sbjct: 61 GKDQLPEAEKSDIATE--FGDDEQKLSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVC 118
Query: 117 EEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIR 176
E+DLR+LCEP+G++ EV L+KD+D+GE KG+AFVAF++KEVA++AI+E+ SK+FKGKT+R
Sbjct: 119 EDDLRELCEPMGDILEVRLMKDRDTGEHKGYAFVAFKTKEVAQKAIEEIHSKEFKGKTLR 178
Query: 177 CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYN 236
CS+SET +RLFIGNVPK+WTE +FRKV+E VGPGV+TIELIKDPQ PSRNRGFAFVLYYN
Sbjct: 179 CSLSETKHRLFIGNVPKTWTEDDFRKVVEGVGPGVETIELIKDPQNPSRNRGFAFVLYYN 238
Query: 237 NACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQ 296
NACADYSRQKM S++FKLDGNTPTV+WA+PK++PDHS A+SQVKALYVKN+PEN TT+Q
Sbjct: 239 NACADYSRQKMASSSFKLDGNTPTVTWADPKNSPDHS--ASSQVKALYVKNIPENVTTEQ 296
Query: 297 LKELFQRHGEVTKVVTPPGKS-GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355
LKELF+RHGEVTKVV PPGK+ GKRDFGFIHYAERSSALKA+KDTEKYEIDGQ+LEV LA
Sbjct: 297 LKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLA 356
Query: 356 RPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRG 415
+PQ +K+ +G Y+ G+HP+ +PH YG+F+G YGS+ G GVA AG QQPMIYGRG
Sbjct: 357 KPQADKKPDGGYAYNPGLHPNHVPHPAYGNFSGNPYGSLGAGYGVA--AGYQQPMIYGRG 414
Query: 416 QMPAGMHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPRRVERG-------PGGRGASSGGS 468
MPAGM MVPM+LPDGRIGYVLQQPGVQ +PP RPRR +R G G +SG
Sbjct: 415 PMPAGMQMVPMMLPDGRIGYVLQQPGVQ--VPPARPRRNDRSNGPSGQPGRGGGGASGND 472
Query: 469 DGSSGRRYRPY 479
+G+ RRYRPY
Sbjct: 473 EGNRSRRYRPY 483
>gi|225453602|ref|XP_002264834.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Vitis
vinifera]
gi|296088998|emb|CBI38701.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/446 (71%), Positives = 379/446 (84%), Gaps = 10/446 (2%)
Query: 1 MADNTEVEERVDLDEDDYMEEIDDDPEEQLDDDGEVGRDGNVKQNDEDEEYDAETSKEDQ 60
MA+ TEVE+RVDLD+D+YMEE+DDD EEQ++D E G D NV++ ED + A S EDQ
Sbjct: 1 MAEGTEVEDRVDLDDDNYMEEMDDDVEEQIEDGVEGGGDENVEEEYEDSK--AGGSGEDQ 58
Query: 61 SPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDL 120
+ S I E ++DE+ TAS+ EDEKEKH QLLALPPHGSE+FIGGLP++A EEDL
Sbjct: 59 LLEVDESRIANE-PLKDEENPTASVDEDEKEKHAQLLALPPHGSEIFIGGLPREALEEDL 117
Query: 121 RDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180
RDLCEPIGE EV L+K++DSGESKG+AF++F++KE+A++AI+EL SK+FKG+TIRCS+S
Sbjct: 118 RDLCEPIGEALEVRLMKNRDSGESKGYAFISFKTKEIAQKAIEELHSKEFKGRTIRCSLS 177
Query: 181 ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACA 240
E+ +RLFIGNVPKSWT+ EFRKVIED+GPG + IELIKDPQ PSRNRGFAFV YYNNACA
Sbjct: 178 ESKHRLFIGNVPKSWTDDEFRKVIEDIGPGAENIELIKDPQNPSRNRGFAFVEYYNNACA 237
Query: 241 DYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKEL 300
DY RQKM+S+NFKLDGNTPTVSWA+PKST DHSAAA QVKALYVKN+PENTTT+QLKEL
Sbjct: 238 DYGRQKMSSSNFKLDGNTPTVSWADPKSTSDHSAAA--QVKALYVKNIPENTTTEQLKEL 295
Query: 301 FQRHGEVTKVVTPPGKSG--KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358
FQRHGEVTKVV PP KSG KRDFGFIH+AERSSALKA+KDTEK+EIDGQ L+V+LA+PQ
Sbjct: 296 FQRHGEVTKVVMPPAKSGQSKRDFGFIHFAERSSALKAVKDTEKHEIDGQALDVSLAKPQ 355
Query: 359 TNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMP 418
++K+ EGV+ ++G HP+ LPH GYG F G YGS+ G GV+ A QQP+IYGRG MP
Sbjct: 356 SDKKFEGVHPYSSG-HPNFLPHPGYGGFGGNPYGSLGPGYGVS--APFQQPVIYGRGPMP 412
Query: 419 AGMHMVPMVLPDGRIGYVLQQPGVQM 444
AGMHMVPMVLPDGRIGYVLQQPGVQM
Sbjct: 413 AGMHMVPMVLPDGRIGYVLQQPGVQM 438
>gi|255648067|gb|ACU24489.1| unknown [Glycine max]
Length = 439
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 307/445 (68%), Positives = 376/445 (84%), Gaps = 11/445 (2%)
Query: 1 MADNTEVEERVDLDEDDYMEEIDDDPEEQLDDDGEVGRDG-NVKQNDEDEEYD---AETS 56
M++ E++ERVDLDE++YMEE+DDD EEQ+DDDG G + N + + E+ EY+ AE
Sbjct: 1 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEDSAAEAG 60
Query: 57 KEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDAS 116
+DQ P A S I TE D++++ + I EDEKEKHD+LLALPPHGSEVFIGGLP+D
Sbjct: 61 GKDQLPEAEKSDIATE--FGDDEQKLSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVC 118
Query: 117 EEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIR 176
E+DLR+LCEP+G++ EV L+KD+D+GE KG+AFVAF++KEVA++AI+E+ SK+FKGKT+R
Sbjct: 119 EDDLRELCEPMGDILEVRLMKDRDTGEHKGYAFVAFKAKEVAQKAIEEIHSKEFKGKTLR 178
Query: 177 CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYN 236
CS+SET +RLFIGNVPK+WTE +FRKV+E VGPGV+TIELIKDPQ PSRNRGFAFVLYYN
Sbjct: 179 CSLSETKHRLFIGNVPKTWTEDDFRKVVEGVGPGVETIELIKDPQNPSRNRGFAFVLYYN 238
Query: 237 NACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQ 296
NACADYSRQKM S++FKLDGNTPTV+WA+PK++PDHS A+SQVKALYVKN+PEN TT+Q
Sbjct: 239 NACADYSRQKMASSSFKLDGNTPTVTWADPKNSPDHS--ASSQVKALYVKNIPENVTTEQ 296
Query: 297 LKELFQRHGEVTKVVTPPGKS-GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355
LKELF+RHGEVTKVV PPGK+ GKRDFGFIHYAERSSALKA+KDTEKYEIDGQ+LEV LA
Sbjct: 297 LKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLA 356
Query: 356 RPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRG 415
+PQ +K+ +G Y+ G+HP+ +PH YG+F+G YGS+ G GVA AG QQPMIYGRG
Sbjct: 357 KPQADKKPDGGYAYNPGLHPNHVPHPAYGNFSGNPYGSLGAGYGVA--AGYQQPMIYGRG 414
Query: 416 QMPAGMHMVPMVLPDGRIGYVLQQP 440
MPAGM MVPM+LPDGRIGYVL P
Sbjct: 415 PMPAGMQMVPMMLPDGRIGYVLNNP 439
>gi|357512617|ref|XP_003626597.1| RNA-binding protein [Medicago truncatula]
gi|355501612|gb|AES82815.1| RNA-binding protein [Medicago truncatula]
Length = 479
Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust.
Identities = 302/459 (65%), Positives = 380/459 (82%), Gaps = 14/459 (3%)
Query: 1 MADNTEVEERVDLDEDDYMEEIDDDPEEQLDDDGEV-----GRDGNVKQNDEDEEYDAET 55
M++ E+++RVDLDE++YMEE+DDD EEQ+DDDG +G+V+++ E EE AE
Sbjct: 1 MSEGAEIDDRVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEH-EYEETAAEA 59
Query: 56 SKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDA 115
++DQ P S + E+++ + A I E+E+EKHD+LL+ PPHGSEVFIGGLP+D
Sbjct: 60 GQKDQFPEGEKS----DHGAEEDELKPALIDEEEREKHDELLSRPPHGSEVFIGGLPRDT 115
Query: 116 SEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
S++D+R+LCEP+G++ E+ L+KD+++GESKG+AFV +++KEVA++AID++ +K+FKGKT+
Sbjct: 116 SDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTL 175
Query: 176 RCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYY 235
RC +SET +RLFIGN+PK+WTE EFRK +E VGPGV++I+LIKDPQ SRNRGFAFVLYY
Sbjct: 176 RCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYY 235
Query: 236 NNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTK 295
NNACAD+SRQKM+S FKLDG TPTV+WA+PK++PD S AAASQVKALYVKN+PEN TT+
Sbjct: 236 NNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPDQS-AAASQVKALYVKNIPENVTTE 294
Query: 296 QLKELFQRHGEVTKVVTPPGK-SGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVAL 354
QLKELF+RHGEVTKVV PPGK SGKRDFGFIHYAERSSALKA+K+TEKYEIDGQ LEV +
Sbjct: 295 QLKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVI 354
Query: 355 ARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGR 414
A+PQ K+ +G Y+ G+HP+ LPH GYG+F+G YGSV G GVAA A QQPMIYGR
Sbjct: 355 AKPQAEKKPDGGYAYNPGLHPNHLPHPGYGNFSGNLYGSVGAGYGVAAAAAYQQPMIYGR 414
Query: 415 GQMPAGMHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPRR 453
G MPAGM MVPMVLPDGRIGYVLQQPGVQ +P PRPRR
Sbjct: 415 GPMPAGMQMVPMVLPDGRIGYVLQQPGVQ--VPGPRPRR 451
>gi|255578218|ref|XP_002529977.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223530539|gb|EEF32420.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 557
Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust.
Identities = 315/473 (66%), Positives = 374/473 (79%), Gaps = 41/473 (8%)
Query: 1 MADNTEVEERVDLDE-DDYMEEIDDDPEEQLDDDGEVGRD---GNVKQNDEDEEYDAET- 55
MA+ TEVEERVDLDE D+YMEE++DD E+QLD+DG+ D NV++N E+++ D++T
Sbjct: 1 MAEGTEVEERVDLDEEDNYMEEMEDDVEDQLDEDGDDDDDNRDANVEENAEEDDDDSKTE 60
Query: 56 -SKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKD 114
S+EDQSP N+E +ED++K TAS++E+EKEKH QLL+LPPHGSEVFIGGLPKD
Sbjct: 61 GSQEDQSPEIARKCTNSE-PLEDDEKPTASVNEEEKEKHAQLLSLPPHGSEVFIGGLPKD 119
Query: 115 ASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKT 174
A E+DLRDLCEPIG++FE+ L+KDKD+GESKGFAFVAFRSKEVA++AI+E+ SK+FKGKT
Sbjct: 120 ALEDDLRDLCEPIGDIFEIRLMKDKDTGESKGFAFVAFRSKEVAQKAIEEIHSKEFKGKT 179
Query: 175 IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLY 234
+RCS+SET NRLF+GNVPK+WTE EFRKV+E+VGPGVD IELI+DPQ PSRNRGFAFVLY
Sbjct: 180 LRCSLSETKNRLFVGNVPKNWTEDEFRKVVEEVGPGVDIIELIRDPQNPSRNRGFAFVLY 239
Query: 235 YNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTT 294
YNNACADYSRQKM +ANFKL+GNTPTVSWA+PK TPD SAAAA QVKALYVKN+PENT+T
Sbjct: 240 YNNACADYSRQKMLNANFKLEGNTPTVSWADPKGTPDQSAAAA-QVKALYVKNIPENTST 298
Query: 295 KQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVAL 354
+QLKELFQRHGE A++D EKY+IDGQVLEV L
Sbjct: 299 EQLKELFQRHGE-----------------------------AVRDNEKYQIDGQVLEVVL 329
Query: 355 ARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGR 414
A+PQT+K+ +GVY A +HPS + H YG FAG Y S+ G GVA + QQP+IYGR
Sbjct: 330 AKPQTDKKPDGVYPYPAALHPSHVTHPAYGGFAGNPYSSLGGGFGVA--SSFQQPVIYGR 387
Query: 415 GQMPAGMHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPRRVERGPGGRGASSGG 467
G MPAGMHMVPMVLPDGRIGYVLQQPGVQMP PRPRRVER G G G
Sbjct: 388 GPMPAGMHMVPMVLPDGRIGYVLQQPGVQMPQ--PRPRRVERSNGSSGPGRAG 438
>gi|449431998|ref|XP_004133787.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
gi|449477982|ref|XP_004155183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
Length = 481
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 312/488 (63%), Positives = 382/488 (78%), Gaps = 16/488 (3%)
Query: 1 MADNTEVEERVDLDEDDYMEEIDDDPEEQLDDDGEVGRDGNVKQNDEDEEYDAETSKEDQ 60
MAD +EVEERVDL+ED+YMEE+DDD EE +D+DG R G + + D +E + D
Sbjct: 1 MADGSEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60
Query: 61 SPGANGSHINTE-DAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEED 119
+ N +++E+ +K ++ + ED+ EKH QLLALPPHGSEVFIGGL +D EED
Sbjct: 61 EDKFSDDRNNLSVESIENREKSSSLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVLEED 120
Query: 120 LRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179
LRD+CE +GE+FE+ ++KDKDSGESKG+AF+AF++KE A++AI++L K+ KGKTIRCS+
Sbjct: 121 LRDMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKGKTIRCSL 180
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S++ +RLFIGNVPKSWT+ EFR++IE VGPGV+ IELIKDPQ P+RNRGFAFVLYYNNAC
Sbjct: 181 SDSKHRLFIGNVPKSWTDDEFRRLIEGVGPGVENIELIKDPQNPNRNRGFAFVLYYNNAC 240
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
ADYSRQKM+SANFKLDGN+PTVSWA+PKS PD+SAAA QVKALYVKN+PENTTT+QLKE
Sbjct: 241 ADYSRQKMSSANFKLDGNSPTVSWADPKSMPDNSAAA--QVKALYVKNIPENTTTEQLKE 298
Query: 300 LFQRHGEVTKVVTPPGKSG--KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357
LFQ+HGEVTKV PPGK+G KRDF FIHYAERSSALKA+K+TEKYEI+GQ+LEV LA+P
Sbjct: 299 LFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKP 358
Query: 358 QTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQM 417
Q++K+++G YS +G +P+ L H GYG + G YGS+ G GV AG QPMIYGRG M
Sbjct: 359 QSDKKSDGAYSHISGSYPNHLLHGGYGGYGGNPYGSLG-GYGVT--AGFHQPMIYGRGPM 415
Query: 418 PAGMHMVPMVLPDGRIGYVLQQPGVQMPLPP------PRPRRVERGPGGRGASSGGSDGS 471
PAGM MVPMVLPDGRIGYVLQQPGV P+PP R G G SS D +
Sbjct: 416 PAGMQMVPMVLPDGRIGYVLQQPGV--PMPPSRSRRSERSNGSGGTMGRSGGSSSSDDVN 473
Query: 472 SGRRYRPY 479
GRRYRPY
Sbjct: 474 RGRRYRPY 481
>gi|18411454|ref|NP_567192.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79324963|ref|NP_001031566.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|13605916|gb|AAK32943.1|AF367357_1 AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
gi|21360555|gb|AAM47474.1| AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
gi|110743368|dbj|BAE99571.1| hypothetical protein [Arabidopsis thaliana]
gi|332656540|gb|AEE81940.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656541|gb|AEE81941.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust.
Identities = 283/420 (67%), Positives = 342/420 (81%), Gaps = 11/420 (2%)
Query: 67 SHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEP 126
+HI+ E A +D++K + I ++++EK+ LL+LPPHGSEVFIGGLP+D EEDLRDLCE
Sbjct: 80 NHIDIETA-DDDEKPPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEE 138
Query: 127 IGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRL 186
IGE+FEV L+KD+DSG+SKG+AFVAF++K+VA++AI+EL SK+FKGKTIRCS+SET NRL
Sbjct: 139 IGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRL 198
Query: 187 FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQK 246
FIGN+PK+WTE EFRKVIEDVGPGV+ IELIKDP +RNRGFAFVLYYNNACADYSRQK
Sbjct: 199 FIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQK 258
Query: 247 MTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGE 306
M +NFKL+GN PTV+WA+PKS+P+HSAAAA QVKALYVKN+PENT+T+QLKELFQRHGE
Sbjct: 259 MIDSNFKLEGNAPTVTWADPKSSPEHSAAAA-QVKALYVKNIPENTSTEQLKELFQRHGE 317
Query: 307 VTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE-G 365
VTK+VTPPGK GKRDFGF+HYAERSSALKA+KDTE+YE++GQ LEV LA+PQ ++ +
Sbjct: 318 VTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPS 377
Query: 366 VYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVP 425
YS A P+ H +G FA YG++ GLG+A QPMIYGRG MP GM MVP
Sbjct: 378 SYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAGLGIA--GSFSQPMIYGRGAMPTGMQMVP 435
Query: 426 MVLPDGRIGYVLQQPGVQMPLPPP-RPRRVERGPGGRGAS----SGGSDGS-SGRRYRPY 479
M+LPDGR+GYVLQQPG+ M PP RPRR +R G G S S DG+ GRRYRPY
Sbjct: 436 MLLPDGRVGYVLQQPGMPMAAAPPQRPRRNDRNNGSSGGSGRDNSHEHDGNRGGRRYRPY 495
>gi|297814257|ref|XP_002875012.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297320849|gb|EFH51271.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 494
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 285/420 (67%), Positives = 345/420 (82%), Gaps = 11/420 (2%)
Query: 67 SHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEP 126
+HI+ E A +D++K + I E+E+EK+ LL+LPPHGSEVFIGGLP+D EEDLRDLCE
Sbjct: 79 NHIDIETA-DDDEKPASPIDEEEREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEE 137
Query: 127 IGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRL 186
IGE+FEV L+KD+DSG+SKG+AFVAF++K+VA++AI++L SK+FKGKTIRCS+SET NRL
Sbjct: 138 IGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEDLHSKEFKGKTIRCSLSETKNRL 197
Query: 187 FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQK 246
FIGN+PK+WTE EFRKVIE+VGPGV+ IELIKDP +RNRGFAFVLYYNNACADYSRQK
Sbjct: 198 FIGNIPKNWTEDEFRKVIENVGPGVENIELIKDPANTTRNRGFAFVLYYNNACADYSRQK 257
Query: 247 MTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGE 306
M +NFKL+GN PTV+WA+PKS+P+HSAAAA QVKALYVKN+PENT+T+QLKELFQRHGE
Sbjct: 258 MIDSNFKLEGNAPTVTWADPKSSPEHSAAAA-QVKALYVKNIPENTSTEQLKELFQRHGE 316
Query: 307 VTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE-G 365
VTK+VTPPGK GKRDFGF+HYAERSSALKA+KDTE+YE++GQ LEV LA+PQ ++ +
Sbjct: 317 VTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPS 376
Query: 366 VYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVP 425
YS A +P+ H +G FA YG++ GLG+A QPMIYGRG MP GM MVP
Sbjct: 377 SYSYGAAPNPAPFVHPTFGGFAAAPYGAMGAGLGIA--GSFSQPMIYGRGAMPTGMQMVP 434
Query: 426 MVLPDGRIGYVLQQPGVQM-PLPPPRPRRVERGPGGRGAS----SGGSDGS-SGRRYRPY 479
M+LPDGR+GYVLQQPG+QM PP RPRRV+R G G S S DG+ GRRYRPY
Sbjct: 435 MLLPDGRVGYVLQQPGMQMAAAPPARPRRVDRNNGSSGGSGRDNSHEHDGNRGGRRYRPY 494
>gi|2252863|gb|AAB62861.1| similar to nucleolin protein [Arabidopsis thaliana]
gi|7267422|emb|CAB80892.1| putative protein [Arabidopsis thaliana]
Length = 521
Score = 562 bits (1449), Expect = e-157, Method: Compositional matrix adjust.
Identities = 283/446 (63%), Positives = 342/446 (76%), Gaps = 37/446 (8%)
Query: 67 SHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEP 126
+HI+ E A +D++K + I ++++EK+ LL+LPPHGSEVFIGGLP+D EEDLRDLCE
Sbjct: 80 NHIDIETA-DDDEKPPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEE 138
Query: 127 IGEVFEVG--------------LVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFK- 171
IGE+FEV L+KD+DSG+SKG+AFVAF++K+VA++AI+EL SK+FK
Sbjct: 139 IGEIFEVRTAIIFVFHDILFVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKA 198
Query: 172 -----------GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDP 220
GKTIRCS+SET NRLFIGN+PK+WTE EFRKVIEDVGPGV+ IELIKDP
Sbjct: 199 SSTANCSLSLSGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDP 258
Query: 221 QAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
+RNRGFAFVLYYNNACADYSRQKM +NFKL+GN PTV+WA+PKS+P+HSAAAA QV
Sbjct: 259 TNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAA-QV 317
Query: 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
KALYVKN+PENT+T+QLKELFQRHGEVTK+VTPPGK GKRDFGF+HYAERSSALKA+KDT
Sbjct: 318 KALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDT 377
Query: 341 EKYEIDGQVLEVALARPQTNKRTE-GVYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLG 399
E+YE++GQ LEV LA+PQ ++ + YS A P+ H +G FA YG++ GLG
Sbjct: 378 ERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAGLG 437
Query: 400 VAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMPLPPP-RPRRVERGP 458
+A QPMIYGRG MP GM MVPM+LPDGR+GYVLQQPG+ M PP RPRR +R
Sbjct: 438 IA--GSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGYVLQQPGMPMAAAPPQRPRRNDRNN 495
Query: 459 GGRGAS----SGGSDGS-SGRRYRPY 479
G G S S DG+ GRRYRPY
Sbjct: 496 GSSGGSGRDNSHEHDGNRGGRRYRPY 521
>gi|334186262|ref|NP_001190647.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656542|gb|AEE81942.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 467
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 277/420 (65%), Positives = 335/420 (79%), Gaps = 19/420 (4%)
Query: 67 SHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEP 126
+HI+ E A +D++K + I ++++EK+ LL+LPPHGSEVFIGGLP+D EEDLRDLCE
Sbjct: 60 NHIDIETA-DDDEKPPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEE 118
Query: 127 IGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRL 186
IGE+FEV L+KD+DSG+SKG+AFVAF++K+VA++AI+EL SK+FKGKTIRCS+SET NRL
Sbjct: 119 IGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRL 178
Query: 187 FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQK 246
FIGN+PK+WTE EFRKVIEDVGPG DP +RNRGFAFVLYYNNACADYSRQK
Sbjct: 179 FIGNIPKNWTEDEFRKVIEDVGPG--------DPTNTTRNRGFAFVLYYNNACADYSRQK 230
Query: 247 MTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGE 306
M +NFKL+GN PTV+WA+PKS+P+HSAAAA QVKALYVKN+PENT+T+QLKELFQRHGE
Sbjct: 231 MIDSNFKLEGNAPTVTWADPKSSPEHSAAAA-QVKALYVKNIPENTSTEQLKELFQRHGE 289
Query: 307 VTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE-G 365
VTK+VTPPGK GKRDFGF+HYAERSSALKA+KDTE+YE++GQ LEV LA+PQ ++ +
Sbjct: 290 VTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPS 349
Query: 366 VYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVP 425
YS A P+ H +G FA YG++ GLG+A QPMIYGRG MP GM MVP
Sbjct: 350 SYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAGLGIA--GSFSQPMIYGRGAMPTGMQMVP 407
Query: 426 MVLPDGRIGYVLQQPGVQMPLPPP-RPRRVERGPGGRGAS----SGGSDGS-SGRRYRPY 479
M+LPDGR+GYVLQQPG+ M PP RPRR +R G G S S DG+ GRRYRPY
Sbjct: 408 MLLPDGRVGYVLQQPGMPMAAAPPQRPRRNDRNNGSSGGSGRDNSHEHDGNRGGRRYRPY 467
>gi|334186264|ref|NP_001190648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656543|gb|AEE81943.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust.
Identities = 277/421 (65%), Positives = 337/421 (80%), Gaps = 13/421 (3%)
Query: 67 SHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEP 126
+HI+ E A +D++K + I ++++EK+ LL+LPPHGSEVFIGGLP+D EEDLRDLCE
Sbjct: 80 NHIDIETA-DDDEKPPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEE 138
Query: 127 IGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGK-TIRCSMSETNNR 185
IGE+FEV L+KD+DSG+SKG+AFVAF++K+VA++AI+EL SK+FK T CS+S +NR
Sbjct: 139 IGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKASSTANCSLS-LSNR 197
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
LFIGN+PK+WTE EFRKVIEDVGPGV+ IELIKDP +RNRGFAFVLYYNNACADYSRQ
Sbjct: 198 LFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQ 257
Query: 246 KMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHG 305
KM +NFKL+GN PTV+WA+PKS+P+HSAAAA QVKALYVKN+PENT+T+QLKELFQRHG
Sbjct: 258 KMIDSNFKLEGNAPTVTWADPKSSPEHSAAAA-QVKALYVKNIPENTSTEQLKELFQRHG 316
Query: 306 EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE- 364
EVTK+VTPPGK GKRDFGF+HYAERSSALKA+KDTE+YE++GQ LEV LA+PQ ++ +
Sbjct: 317 EVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDP 376
Query: 365 GVYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMV 424
YS A P+ H +G FA YG++ GLG+A QPMIYGRG MP GM MV
Sbjct: 377 SSYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAGLGIA--GSFSQPMIYGRGAMPTGMQMV 434
Query: 425 PMVLPDGRIGYVLQQPGVQMPLPPP-RPRRVERGPGGRGAS----SGGSDGS-SGRRYRP 478
PM+LPDGR+GYVLQQPG+ M PP RPRR +R G G S S DG+ GRRYRP
Sbjct: 435 PMLLPDGRVGYVLQQPGMPMAAAPPQRPRRNDRNNGSSGGSGRDNSHEHDGNRGGRRYRP 494
Query: 479 Y 479
Y
Sbjct: 495 Y 495
>gi|224068117|ref|XP_002302667.1| predicted protein [Populus trichocarpa]
gi|222844393|gb|EEE81940.1| predicted protein [Populus trichocarpa]
Length = 394
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 265/483 (54%), Positives = 319/483 (66%), Gaps = 93/483 (19%)
Query: 1 MADNTEVEERVDLDEDDYMEEIDDDPEEQLDDDGEVGRDGNVKQNDEDEEYDAETSKEDQ 60
MA+ TE+EERVDL+ED+YMEEIDDD ++QL ED
Sbjct: 1 MAEGTEIEERVDLEEDNYMEEIDDDVQDQL--------------------------DEDG 34
Query: 61 SPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDL 120
A +H E ED + EK+KH QLL+LPPHGSEVFIGGLPKD E++L
Sbjct: 35 EDDAGDAHAEENVEEEYEDSKPEG---KEKDKHAQLLSLPPHGSEVFIGGLPKDVIEDEL 91
Query: 121 RDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180
RDLCE IGE+FE+ L+KDKD+GESKGFAFVAF+SKEVA++A +EL SKD+KGKT+RCS+S
Sbjct: 92 RDLCETIGEIFEIRLMKDKDTGESKGFAFVAFKSKEVARKATEELRSKDYKGKTLRCSIS 151
Query: 181 ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACA 240
ET NRLFIGNVPK+ TE EFRK+IE+VGPG++ +ELIKDPQ P+RNRGFAF+LYYNNACA
Sbjct: 152 ETKNRLFIGNVPKNLTEDEFRKIIEEVGPGMEVLELIKDPQTPTRNRGFAFILYYNNACA 211
Query: 241 DYSRQKMTSANFKLDGNTPTVSWAEPKST-PDHSAAAASQVKALYVKNLPENTTTKQLKE 299
DYSRQKM +ANFKLDG+TPTVSWA+PK PDHS AAA Q V++ E
Sbjct: 212 DYSRQKMLNANFKLDGHTPTVSWADPKGMPPDHSPAAAGQA----VRD----------TE 257
Query: 300 LFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQT 359
++ G++ +VV LA+PQ
Sbjct: 258 KYEIDGQLLEVV------------------------------------------LAKPQA 275
Query: 360 NKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPA 419
+K+ +G Y AGV+P+ +P Y FAG +GS+ TG GVA AG QQP+IYGRG MPA
Sbjct: 276 DKKPDGSYPYNAGVNPNPVPLPAYSGFAGNPHGSLGTGFGVA--AGFQQPVIYGRGPMPA 333
Query: 420 GMHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPRRVER--GPGGRG-ASSGGSDGSSGRRY 476
GMHMVPMVLPDGRIGYVLQQPGVQMP P+PRRV+R P G G A S G DG+ GRRY
Sbjct: 334 GMHMVPMVLPDGRIGYVLQQPGVQMPQ--PQPRRVDRSNSPSGPGRAGSSGDDGNRGRRY 391
Query: 477 RPY 479
RPY
Sbjct: 392 RPY 394
>gi|449444797|ref|XP_004140160.1| PREDICTED: uncharacterized protein LOC101218373 [Cucumis sativus]
Length = 784
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/392 (58%), Positives = 300/392 (76%), Gaps = 17/392 (4%)
Query: 63 GANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRD 122
G N + IN+++ ++ EDE +KH +LLALPPHGSEV++GG+P+D+SE+DLR
Sbjct: 362 GTNDNGINSQNETIND--------EDETKKHAELLALPPHGSEVYVGGIPQDSSEDDLRR 413
Query: 123 LCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSET 182
CE IGEV EV +++ K+S E+KGFAFV FRS E+A +AIDEL + +FKGK I+CS S+
Sbjct: 414 FCESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQA 473
Query: 183 NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADY 242
+RLFIGNVP+SW E++ +KV+ ++GPGV +EL+KD + S NRGFAF+ YYN+ACA+Y
Sbjct: 474 KHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEY 533
Query: 243 SRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQ 302
SRQKM + FKLD N PTVSWA+PK+ ++AASQVKA+YVKNLP+N T +QLK+LF
Sbjct: 534 SRQKMMNPKFKLDDNAPTVSWADPKNA---DSSAASQVKAVYVKNLPKNVTQEQLKKLFD 590
Query: 303 RHGEVTKVVTPPGKSG--KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTN 360
HG++TKVV PP KSG K GF+H++ERSSA+KA+K+TEKYE+DGQVLE +LA+PQ +
Sbjct: 591 HHGKITKVVLPPAKSGQEKNRIGFVHFSERSSAMKALKNTEKYELDGQVLECSLAKPQAD 650
Query: 361 KRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAG 420
+++ G S +G+ P+ P GYG F G AYG+V+ G G G+G QP+IYGRG PAG
Sbjct: 651 QKSGGSNSQKSGLLPNYPPRVGYG-FVGGAYGAVNAGYG---GSGFGQPLIYGRGPTPAG 706
Query: 421 MHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPR 452
M M+PM+LPDGRIGYVLQQPG QM PPP PR
Sbjct: 707 MAMMPMLLPDGRIGYVLQQPGSQMLTPPPHPR 738
>gi|449518867|ref|XP_004166457.1| PREDICTED: uncharacterized protein LOC101228216 [Cucumis sativus]
Length = 828
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/392 (58%), Positives = 300/392 (76%), Gaps = 17/392 (4%)
Query: 63 GANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRD 122
G N + IN+++ ++ EDE +KH +LLALPPHGSEV++GG+P+D+SE+DLR
Sbjct: 406 GTNDNGINSQNETIND--------EDETKKHAELLALPPHGSEVYVGGIPQDSSEDDLRR 457
Query: 123 LCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSET 182
CE IGEV EV +++ K+S E+KGFAFV FRS E+A +AIDEL + +FKGK I+CS S+
Sbjct: 458 FCESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQA 517
Query: 183 NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADY 242
+RLFIGNVP+SW E++ +KV+ ++GPGV +EL+KD + S NRGFAF+ YYN+ACA+Y
Sbjct: 518 KHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEY 577
Query: 243 SRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQ 302
SRQKM + FKLD N PTVSWA+PK+ ++AASQVKA+YVKNLP+N T +QLK+LF
Sbjct: 578 SRQKMMNPKFKLDDNAPTVSWADPKNA---DSSAASQVKAVYVKNLPKNVTQEQLKKLFD 634
Query: 303 RHGEVTKVVTPPGKSG--KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTN 360
HG++TKVV PP KSG K GF+H++ERSSA+KA+K+TEKYE+DGQVLE +LA+PQ +
Sbjct: 635 HHGKITKVVLPPAKSGQEKNRIGFVHFSERSSAMKALKNTEKYELDGQVLECSLAKPQAD 694
Query: 361 KRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAG 420
+++ G S +G+ P+ P GYG F G AYG+V+ G G G+G QP+IYGRG PAG
Sbjct: 695 QKSGGSNSQKSGLLPNYPPRVGYG-FVGGAYGAVNAGYG---GSGFGQPLIYGRGPTPAG 750
Query: 421 MHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPR 452
M M+PM+LPDGRIGYVLQQPG QM PPP PR
Sbjct: 751 MAMMPMLLPDGRIGYVLQQPGSQMLTPPPHPR 782
>gi|255578939|ref|XP_002530322.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223530126|gb|EEF32038.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 481
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 223/397 (56%), Positives = 295/397 (74%), Gaps = 12/397 (3%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+DE+ KH +LLALPPHGSEV++GG+P DASE+DLR CE IGEV EV ++K K S ++KG
Sbjct: 93 QDEERKHAELLALPPHGSEVYLGGIPIDASEQDLRHFCESIGEVTEVRIMKGKASSDTKG 152
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIED 206
+AFV FRSKE+A +AI++L + +FKG+ I+CS S+ N+RLF+GNVP+ W EK+ +V+
Sbjct: 153 YAFVTFRSKELASKAIEQLNNTEFKGRKIKCSTSQANHRLFLGNVPRDWEEKDMMQVVMK 212
Query: 207 VGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEP 266
+GPGV ++EL+KDPQ SRNRGFAF+ YYN+ACADYSR+KM++ FKLD N PTVSWA+P
Sbjct: 213 IGPGVISVELLKDPQNSSRNRGFAFIEYYNHACADYSRKKMSNPQFKLDDNAPTVSWADP 272
Query: 267 KSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG--KRDFGF 324
K+ ++AASQVKA+YVKNLP + T +L++LF+RHG+VTKVV PP K+G + F F
Sbjct: 273 KNA---GSSAASQVKAVYVKNLPHDITQDRLRQLFERHGKVTKVVVPPAKAGHERSRFAF 329
Query: 325 IHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGV-HPSGLPHAGY 383
+H+AERSSA+KA+K+TEKYEIDGQVLE +LA+PQ ++++ G + V HP+ P GY
Sbjct: 330 VHFAERSSAMKALKNTEKYEIDGQVLECSLAKPQADQKSSGGSNLQKSVLHPTFPPRLGY 389
Query: 384 GSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQ 443
G GT YG+ LG GA QPMIYGRG PAG+ M+PM+LPDGRIGYV+QQPG+Q
Sbjct: 390 GLVGGT-YGA----LGAGYGASFAQPMIYGRGPTPAGISMMPMLLPDGRIGYVMQQPGMQ 444
Query: 444 MPLPPPRP-RRVERGPGGRGASSGGSDGSSGRRYRPY 479
PP +P G ++ + GRRY PY
Sbjct: 445 PQTPPSQPRAGRGGSAGSSSGGRRSNENNRGRRYNPY 481
>gi|224088555|ref|XP_002308472.1| predicted protein [Populus trichocarpa]
gi|222854448|gb|EEE91995.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/368 (59%), Positives = 287/368 (77%), Gaps = 10/368 (2%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
EDE KH +LLALPPHGSEV++GG+P DASEEDL++ CE IGEV E+ ++K KDS ESKG
Sbjct: 51 EDEHRKHSELLALPPHGSEVYLGGIPPDASEEDLKEFCESIGEVTEIRIMKGKDSSESKG 110
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIED 206
+AFV FR+KE+A +AI+EL + +FKGK ++CS S+ N+RLFIGNVP++W E++ +K ++
Sbjct: 111 YAFVTFRTKELASKAIEELNNTEFKGKKVKCSTSQANHRLFIGNVPRNWGEEDMKKAVKK 170
Query: 207 VGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEP 266
GPGV+++EL+KDPQ PSRNRGFAF+ YYN+ACA+YSR+ M+S FKLD N PTVSWA+P
Sbjct: 171 TGPGVNSVELLKDPQNPSRNRGFAFIEYYNHACAEYSRKMMSSPEFKLDDNAPTVSWADP 230
Query: 267 KSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG--KRDFGF 324
K+ ++AASQVKA+YVKNLPE+ +L++LF+ HG+VTKVV PP K G K FGF
Sbjct: 231 KNA---GSSAASQVKAVYVKNLPEDINQDRLRQLFEHHGKVTKVVLPPAKPGHEKSRFGF 287
Query: 325 IHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTN-KRTEGVYSCAAGVHPSGLPHAGY 383
+H+AERSSA+KA+K+TEKY+IDGQVL+ +LA+PQ + K + G S + H S P GY
Sbjct: 288 VHFAERSSAMKALKNTEKYKIDGQVLDCSLAKPQADLKSSGGPNSQKSSPHSSFPPRVGY 347
Query: 384 GSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQ 443
S G++YG++ AG QP+IYGRG PAGM M+PM+LPDGRIGYVLQQPG+Q
Sbjct: 348 -SLVGSSYGALGA---GFGAAGFAQPVIYGRGPTPAGMSMMPMLLPDGRIGYVLQQPGMQ 403
Query: 444 MPLPPPRP 451
M PPP+P
Sbjct: 404 MHSPPPQP 411
>gi|224104859|ref|XP_002313595.1| predicted protein [Populus trichocarpa]
gi|222850003|gb|EEE87550.1| predicted protein [Populus trichocarpa]
Length = 489
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 230/425 (54%), Positives = 299/425 (70%), Gaps = 26/425 (6%)
Query: 67 SHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEP 126
S+ N D + ED EDE++K+D+LLA PPHGSEV+IGG+P DASEEDLRD CE
Sbjct: 79 SNANAGDETKVED-------EDEQKKYDELLARPPHGSEVYIGGIPNDASEEDLRDFCES 131
Query: 127 IGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRL 186
+GEV EV ++++KDS E++GFAFV FRS ++A AI EL + +FKGK I+CS S+ +RL
Sbjct: 132 VGEVTEVRIMREKDSSENRGFAFVTFRSVDLASTAIGELNNTEFKGKKIKCSTSQAKHRL 191
Query: 187 FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQK 246
F+ N+P+SW E RK++ +VGPGV ++L+K+ ++ S NRG+AF+ YYNNACA+YSRQK
Sbjct: 192 FLSNIPRSWGEDGLRKIVAEVGPGVTNVQLVKE-KSSSNNRGYAFIEYYNNACAEYSRQK 250
Query: 247 MTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGE 306
M FKL N P VSWA+PK+ ++A+SQVKALYVKNLP+ T QLK+LF+RHG+
Sbjct: 251 MMDPKFKLGDNAPAVSWADPKNA---DSSASSQVKALYVKNLPKTVTQDQLKKLFERHGK 307
Query: 307 VTKVVTPPGKSG--KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+TKVV PP KSG K GF+H+AERSSA+KA+KDTEKYE+DGQ++E ALA+PQ+ ++
Sbjct: 308 ITKVVLPPAKSGQEKNRIGFVHFAERSSAMKALKDTEKYELDGQLVECALAKPQSEQKAA 367
Query: 365 GVYSCA-AGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHM 423
G + G+ P P GYG G AYG++ G A A QQP+IYG G PAGM M
Sbjct: 368 GGSNLQNTGLLPGYPPGVGYG-MMGNAYGALGAGYVTAGFA--QQPLIYGSGPSPAGMAM 424
Query: 424 VPMVLPDGRIGYVLQQPGVQMPLPPPRPRRVER-GPGGRGASSGGS--------DGSSGR 474
+PM+LPDG+ GYVLQQPGVQ+ P R R G GGRG GGS D G+
Sbjct: 425 MPMLLPDGQFGYVLQQPGVQLHSPTSYQRNDSRSGSGGRGNKMGGSSNRGRHSNDSGHGQ 484
Query: 475 RYRPY 479
R+RPY
Sbjct: 485 RFRPY 489
>gi|224131824|ref|XP_002328117.1| predicted protein [Populus trichocarpa]
gi|222837632|gb|EEE75997.1| predicted protein [Populus trichocarpa]
Length = 419
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 228/424 (53%), Positives = 296/424 (69%), Gaps = 27/424 (6%)
Query: 67 SHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEP 126
SH E VEDED EK+KH +LLA PPHGSEV+IGG+P DASEEDL+D CE
Sbjct: 12 SHQGDEAKVEDED---------EKKKHAELLARPPHGSEVYIGGVPNDASEEDLKDFCES 62
Query: 127 IGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRL 186
+GEV EV ++K KDS ++KGFAFV FRS ++A +AI EL + +FKGK I+CS S+ +RL
Sbjct: 63 VGEVTEVRMMKGKDSSDNKGFAFVTFRSVDLATKAIGELNNTEFKGKRIKCSTSQAKHRL 122
Query: 187 FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQK 246
F+ N+P+SW E++ K + +VGPG ++L+K ++ S NRG+AFV YYNNACA+YSRQK
Sbjct: 123 FLSNIPRSWGEEDLSKFVAEVGPGTTNVQLVKVSESSSNNRGYAFVEYYNNACAEYSRQK 182
Query: 247 MTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGE 306
M FKL N P+VSWA+PK+ ++ +SQVKA+YVKNLP+ T QLK+LF+RHG+
Sbjct: 183 MIDPKFKLGDNAPSVSWADPKNA---DSSTSSQVKAIYVKNLPKTVTQDQLKKLFERHGK 239
Query: 307 VTKVVTPPGKSG--KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+TKVV PP KSG K GF+H+AERSSA+KA+KDTEKYE++GQ +E ALA+PQ+ ++
Sbjct: 240 ITKVVLPPAKSGQEKNRIGFVHFAERSSAMKALKDTEKYELNGQSVECALAKPQSEQKPA 299
Query: 365 GVYSCA-AGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHM 423
G + AG+ P+ P GYG G+AYG++ G G QP+IYG G PAGM M
Sbjct: 300 GGSNLQRAGLLPAYPPGVGYG-MMGSAYGALGAGY---VATGFTQPLIYGSGPAPAGMAM 355
Query: 424 VPMVLPDGRIGYVLQQPGVQMPLPPPRPRRVERGPGGR-----GASSGG---SDGSSGRR 475
+PM+LPDG+ GYVLQQPGVQ+ P R R GR G+SS G SD S GRR
Sbjct: 356 MPMLLPDGQFGYVLQQPGVQLHSPTSYQRNDSRSGSGRGNKMVGSSSRGRQRSDASHGRR 415
Query: 476 YRPY 479
+RPY
Sbjct: 416 FRPY 419
>gi|225464938|ref|XP_002275366.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Vitis
vinifera]
Length = 503
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 253/505 (50%), Positives = 329/505 (65%), Gaps = 60/505 (11%)
Query: 6 EVEERVDLDEDDYMEEIDDDPEEQLD--------------------DDGEVGRDGNVKQN 45
E +ERVDLDE D+DP+E +D + E + +
Sbjct: 28 ESDERVDLDE-------DNDPDEAMDEEVEYEEVEVEEEVEEVEEEVEEEEVEEEEEEVE 80
Query: 46 DEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSE 105
+E+EE +A + E +SP G I ED EDE +KH +LLALPPHGSE
Sbjct: 81 EEEEEEEANEADEQKSPSGGGGKI--ED-------------EDESKKHAELLALPPHGSE 125
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
V++GG+ +DASEEDL+ CE +GEV EV ++K KDSGE+KGFAFV FR+ E+A +AI+EL
Sbjct: 126 VYVGGISQDASEEDLKSFCESVGEVTEVRIMKGKDSGENKGFAFVTFRNVELASKAIEEL 185
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSR 225
+ +FKG+ I+CS S+ +RLFIGNVP+SW E++ +KV+ ++GPGV +EL+KD + S
Sbjct: 186 NNTEFKGRKIKCSTSQAKHRLFIGNVPRSWGEEDIKKVVTEIGPGVTAVELVKDMKNSSN 245
Query: 226 NRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYV 285
NRGFAF+ YYN+ACA+YSRQKM + FKLD N PTVSWA+PK+ ++ ASQVKA+YV
Sbjct: 246 NRGFAFIDYYNHACAEYSRQKMMNPKFKLDNNAPTVSWADPKNA---DSSPASQVKAVYV 302
Query: 286 KNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG--KRDFGFIHYAERSSALKAIKDTEKY 343
KNLP+N T QLK+LF+ HG++TKVV PP KSG K GF+H+AERSSA+KA+K+TEKY
Sbjct: 303 KNLPKNITQDQLKQLFEHHGKITKVVLPPAKSGQEKSRIGFVHFAERSSAMKALKNTEKY 362
Query: 344 EIDGQVLEVALARPQTNKRTE-GVYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAA 402
EIDGQVLE +LA+PQ ++++ G S +G+ S P GYG G +
Sbjct: 363 EIDGQVLECSLAKPQADQKSVGGSNSQKSGLLSSYPPRVGYGFVGGAYGALGAG----YG 418
Query: 403 GAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPRRVERGPGGRG 462
AG QP+IYGRG PAGM M+PM+LPDGRIGYVLQQPG Q PP R RG G G
Sbjct: 419 TAGFAQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGAQPHTPPSHQRSSGRGGSGSG 478
Query: 463 ASSG--------GSDGSSGRRYRPY 479
+ SG +DG GRRY PY
Sbjct: 479 SKSGGSSSRGRHNNDGGHGRRYHPY 503
>gi|296084906|emb|CBI28315.3| unnamed protein product [Vitis vinifera]
Length = 434
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 225/400 (56%), Positives = 289/400 (72%), Gaps = 18/400 (4%)
Query: 91 EKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFV 150
+KH +LLALPPHGSEV++GG+ +DASEEDL+ CE +GEV EV ++K KDSGE+KGFAFV
Sbjct: 42 KKHAELLALPPHGSEVYVGGISQDASEEDLKSFCESVGEVTEVRIMKGKDSGENKGFAFV 101
Query: 151 AFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
FR+ E+A +AI+EL + +FKG+ I+CS S+ +RLFIGNVP+SW E++ +KV+ ++GPG
Sbjct: 102 TFRNVELASKAIEELNNTEFKGRKIKCSTSQAKHRLFIGNVPRSWGEEDIKKVVTEIGPG 161
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTP 270
V +EL+KD + S NRGFAF+ YYN+ACA+YSRQKM + FKLD N PTVSWA+PK+
Sbjct: 162 VTAVELVKDMKNSSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDNNAPTVSWADPKNA- 220
Query: 271 DHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG--KRDFGFIHYA 328
++ ASQVKA+YVKNLP+N T QLK+LF+ HG++TKVV PP KSG K GF+H+A
Sbjct: 221 --DSSPASQVKAVYVKNLPKNITQDQLKQLFEHHGKITKVVLPPAKSGQEKSRIGFVHFA 278
Query: 329 ERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE-GVYSCAAGVHPSGLPHAGYGSFA 387
ERSSA+KA+K+TEKYEIDGQVLE +LA+PQ ++++ G S +G+ S P GYG
Sbjct: 279 ERSSAMKALKNTEKYEIDGQVLECSLAKPQADQKSVGGSNSQKSGLLSSYPPRVGYGFVG 338
Query: 388 GTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMPLP 447
G + AG QP+IYGRG PAGM M+PM+LPDGRIGYVLQQPG Q P
Sbjct: 339 GAYGALGAG----YGTAGFAQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGAQPHTP 394
Query: 448 PPRPRRVERGPGGRGASSG--------GSDGSSGRRYRPY 479
P R RG G G+ SG +DG GRRY PY
Sbjct: 395 PSHQRSSGRGGSGSGSKSGGSSSRGRHNNDGGHGRRYHPY 434
>gi|212275376|ref|NP_001130564.1| uncharacterized protein LOC100191663 [Zea mays]
gi|194689494|gb|ACF78831.1| unknown [Zea mays]
gi|219887513|gb|ACL54131.1| unknown [Zea mays]
gi|238010456|gb|ACR36263.1| unknown [Zea mays]
gi|413921450|gb|AFW61382.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921451|gb|AFW61383.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921452|gb|AFW61384.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921453|gb|AFW61385.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
Length = 467
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 229/396 (57%), Positives = 289/396 (72%), Gaps = 19/396 (4%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
E+E+ K D +LALPPHGSEVFIGGLP+D +EEDLR+LCEP+GE++EV L KDKD+ E+KG
Sbjct: 88 EEERSKWDDMLALPPHGSEVFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKDTKENKG 147
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIED 206
FAFV F KE A+RAI+++ ++FKG+T+RCS+S+ +RLF+GNVPK +E+E I+
Sbjct: 148 FAFVTFMDKEAAQRAIEDVQDREFKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTNTIKG 207
Query: 207 VGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEP 266
GPGV IE+ KD P+RNRGF FV YYN+ACADY+RQK++S NFK+DG+ TVSWAEP
Sbjct: 208 KGPGVINIEMFKDQHDPNRNRGFLFVEYYNHACADYARQKLSSPNFKVDGSQLTVSWAEP 267
Query: 267 KSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFI 325
K + D S+AAA QVK +YVKNLPEN + +++K+LF +HGEVTK+V PP K+G KRDFGF+
Sbjct: 268 KGSTDASSAAA-QVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKRDFGFV 326
Query: 326 HYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGS 385
H+AERSSALKA+K +EKYEIDGQVLEV++A+P +K+ + + P G P+
Sbjct: 327 HFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLADKKPDHSH------RPGGGPNYPLPP 380
Query: 386 FAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMP 445
+ G Y G G QPMIYGRG PAGM MVPMVLPDGR+GYVLQQPG P
Sbjct: 381 YGGGGYMGDPYGAYGGGGPAYNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQPGGMPP 440
Query: 446 LPPPRPR--RVERGPGGRGASSGGSDGSSGRRYRPY 479
PPPR R + G GG G S RRYRPY
Sbjct: 441 PPPPRRGSDRRDSGRGGEGHS---------RRYRPY 467
>gi|356542760|ref|XP_003539833.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Glycine
max]
Length = 509
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 226/422 (53%), Positives = 299/422 (70%), Gaps = 22/422 (5%)
Query: 72 EDAVEDEDKRTASIS-EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEV 130
+DA+++ A + EDEK KH +LL+LPPHGSEV+IGG+P AS+EDL+ LCE IGEV
Sbjct: 96 DDAMQNHSSDEAKVEDEDEKRKHAELLSLPPHGSEVYIGGIP-HASDEDLKSLCERIGEV 154
Query: 131 FEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGN 190
EV ++K KDS E+KGF FV F S E+A +AI+EL + +F GK I+CS S+ +RLFIGN
Sbjct: 155 AEVRIMKGKDSSENKGFGFVTFTSVELASKAIEELNNTEFMGKKIKCSKSQAKHRLFIGN 214
Query: 191 VPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSA 250
VP+SW ++ +K++ ++GPGV +EL+KD + + NRGFAF+ YYN+ACA+YSRQKM S
Sbjct: 215 VPRSWGVEDLKKIVTEIGPGVTGVELVKDMKNTNNNRGFAFIDYYNHACAEYSRQKMMSP 274
Query: 251 NFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV 310
FKL N PTVSWA+PK+ ++AASQVKA+YVKNLP+N T +QLK+LF+RHG++TKV
Sbjct: 275 TFKLGENAPTVSWADPKNA---ESSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKV 331
Query: 311 VTPPGKSG--KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEG--V 366
V PP KSG K GF+H+AERS+A+KA+K+TE+YE++GQ+LE +LA+PQ ++++ G
Sbjct: 332 VLPPAKSGQEKNRIGFVHFAERSNAMKALKNTERYELEGQLLECSLAKPQADQKSGGSNT 391
Query: 367 YSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPM 426
G+ PS PH GYG G + A GL QP++YG GQ PAGM M+PM
Sbjct: 392 QKPGPGLLPSYPPHVGYGLVGGAYGALGAG----YAAPGLAQPLLYGGGQTPAGMAMMPM 447
Query: 427 VLPDGRIGYVLQQPGVQMPLPPPRPRRVERGPGGR------GASSGG---SDGSSGRRYR 477
+L DGRIGYVLQQPG+Q PP R G G G+SS G +DG GRRYR
Sbjct: 448 LLADGRIGYVLQQPGMQPQAPPSHHRGGRGGGGSGSGNRNAGSSSKGRHNNDGGHGRRYR 507
Query: 478 PY 479
PY
Sbjct: 508 PY 509
>gi|255565651|ref|XP_002523815.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223536903|gb|EEF38541.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 489
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 221/402 (54%), Positives = 287/402 (71%), Gaps = 19/402 (4%)
Query: 88 DEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGF 147
+E++ H +LLA PPHGSEV+IGG+P DASEEDLR CE +GEV EV L+K KDS E+K F
Sbjct: 97 NERKNHAELLARPPHGSEVYIGGIPHDASEEDLRGFCESVGEVTEVRLMKGKDSNENKRF 156
Query: 148 AFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDV 207
AFV FRS ++A +AIDEL + +FKGK I+CS ++ RLF+GN+P+SW E++ RKV+ +V
Sbjct: 157 AFVTFRSVDLASKAIDELNNTEFKGKRIKCSTAQAKYRLFLGNIPRSWKEEDLRKVVAEV 216
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK 267
GPGV ++L+KD + S N+GFAF+ YYN ACA+YSRQKM + +FKL N PTVSWAEPK
Sbjct: 217 GPGVTAVQLVKDMKT-SNNKGFAFIDYYNTACAEYSRQKMVNPDFKLGDNAPTVSWAEPK 275
Query: 268 STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG--KRDFGFI 325
+ ++A+SQVKA+YVKNLP+N T QLK+LF+ HG++TKVV PP K G K GF+
Sbjct: 276 NA---DSSASSQVKAIYVKNLPKNVTQDQLKKLFEHHGKITKVVLPPAKPGQEKNRIGFV 332
Query: 326 HYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGS 385
H+AERSSA+KA+K+TE+YE+DGQV+E +LA+PQ ++++ GV + +P LP Y
Sbjct: 333 HFAERSSAMKALKNTERYELDGQVVECSLAKPQADQKSVGVSNLQ---NPGLLP--SYPP 387
Query: 386 FAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMP 445
G + G A + QP+IYGRG PAGM M+PM+LPDGRIGYVLQQPGVQ
Sbjct: 388 GGGYGLIGGAFGALGAGYGAVAQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGVQPH 447
Query: 446 LPPPRPRRVERG--------PGGRGASSGGSDGSSGRRYRPY 479
PP R R GG G G+DGS+GRRYRPY
Sbjct: 448 TPPSHHRNNSRNSSGVASRSGGGSGRGRQGNDGSNGRRYRPY 489
>gi|357144466|ref|XP_003573302.1| PREDICTED: APOBEC1 complementation factor-like [Brachypodium
distachyon]
Length = 476
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 229/407 (56%), Positives = 289/407 (71%), Gaps = 18/407 (4%)
Query: 77 DEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLV 136
D+D +DEK K D+LLALP G EVFIGGLP+D +EEDLR+LCEP+GE+ EV L+
Sbjct: 84 DKDGTDGPKDDDEKRKWDELLALPQQGCEVFIGGLPRDTTEEDLRELCEPLGEIHEVRLM 143
Query: 137 KDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWT 196
KDKD+ E+KGFAFV F +K+VA+RAI+EL KD KG+T+RCS+S+ +RLF+GNVPK +
Sbjct: 144 KDKDTKENKGFAFVTFTAKDVAQRAIEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLS 203
Query: 197 EKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG 256
E E +I+ GPGV IE+ KD PSRNRGF FV YYN+ACADYSRQK++S +FK+DG
Sbjct: 204 EDELTSIIKGKGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYSRQKLSSPDFKVDG 263
Query: 257 NTPTVSWAEPK---STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTP 313
+ TVSWAEPK S+ S+++A+QVK +YVKNLPEN + +++K+LF+ HGEVTK+V P
Sbjct: 264 SQLTVSWAEPKGSSSSSSDSSSSAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLP 323
Query: 314 PGKSG-KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAG 372
P K+G KRDFGF+H+AERSSALKA+K +EKYEIDGQVLEV++A+P ++K+ +
Sbjct: 324 PAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPD------HS 377
Query: 373 VHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGR 432
V P G P+ + G Y G G G QPMIYGRG PAGM MVPMVLPDGR
Sbjct: 378 VRPGGPPNYPLPPYGG--YMGDPYGAYGGGGPGFNQPMIYGRGPAPAGMRMVPMVLPDGR 435
Query: 433 IGYVLQQPGVQMPLPPPRPRRVERGPGGRGASSGGSDGSSGRRYRPY 479
+GYVLQQPG P R R +GS GRRYRPY
Sbjct: 436 LGYVLQQPGGM------PPPPPPRRGDRRDGGGRSGEGSHGRRYRPY 476
>gi|413921449|gb|AFW61381.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
Length = 465
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 228/396 (57%), Positives = 288/396 (72%), Gaps = 21/396 (5%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
E+E+ K D +LALPPHGSEVFIGGLP+D +EEDLR+LCEP+GE++EV L KDKD+ E+KG
Sbjct: 88 EEERSKWDDMLALPPHGSEVFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKDTKENKG 147
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIED 206
FAFV F KE A+RAI+++ ++FKG+T+RCS+S+ +RLF+GNVPK +E+E I+
Sbjct: 148 FAFVTFMDKEAAQRAIEDVQDREFKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTNTIKG 207
Query: 207 VGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEP 266
GPGV IE+ K P+RNRGF FV YYN+ACADY+RQK++S NFK+DG+ TVSWAEP
Sbjct: 208 KGPGVINIEMFK--HDPNRNRGFLFVEYYNHACADYARQKLSSPNFKVDGSQLTVSWAEP 265
Query: 267 KSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFI 325
K + D S+AAA QVK +YVKNLPEN + +++K+LF +HGEVTK+V PP K+G KRDFGF+
Sbjct: 266 KGSTDASSAAA-QVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKRDFGFV 324
Query: 326 HYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGS 385
H+AERSSALKA+K +EKYEIDGQVLEV++A+P +K+ + + P G P+
Sbjct: 325 HFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLADKKPDHSH------RPGGGPNYPLPP 378
Query: 386 FAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMP 445
+ G Y G G QPMIYGRG PAGM MVPMVLPDGR+GYVLQQPG P
Sbjct: 379 YGGGGYMGDPYGAYGGGGPAYNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQPGGMPP 438
Query: 446 LPPPRPR--RVERGPGGRGASSGGSDGSSGRRYRPY 479
PPPR R + G GG G S RRYRPY
Sbjct: 439 PPPPRRGSDRRDSGRGGEGHS---------RRYRPY 465
>gi|225440864|ref|XP_002276509.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Vitis
vinifera]
Length = 490
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 213/408 (52%), Positives = 287/408 (70%), Gaps = 14/408 (3%)
Query: 76 EDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGL 135
+DE K ++E +H +LLALPPHGSEV++GG+P +ASEEDLR CEP+GEV EV +
Sbjct: 93 DDEIKSAKGEVDNENRRHAELLALPPHGSEVYLGGIPNNASEEDLRGFCEPVGEVTEVRI 152
Query: 136 VKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW 195
+K KDS E+KG+AFV FR+KE+A +A++EL + + KG+ I+CS S+ +RLFI NVP++W
Sbjct: 153 LKGKDSAETKGYAFVTFRTKELASKAMEELNNAEIKGRKIKCSASQVKHRLFISNVPRTW 212
Query: 196 TEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLD 255
E++ +KV+ ++GPGV+ ++L KDPQ SRNRGFAF+ YYN+ACA+YSR+KM++ FKLD
Sbjct: 213 EEEDMKKVVTEIGPGVNLVDLWKDPQNSSRNRGFAFIEYYNHACAEYSRKKMSNPKFKLD 272
Query: 256 GNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPG 315
N TVSWA+PK+ ++AASQVKA+Y+KNLP+ T QL+ELF +HG++TKVV PP
Sbjct: 273 NNASTVSWADPKNV---ESSAASQVKAVYIKNLPKYMTQDQLRELFGQHGKITKVVIPPA 329
Query: 316 KSGKRD--FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR-TEGVYSCAAG 372
K+G+ + FGF+H+AERSSA+KA+K+TEKYEIDG +L +LA+PQ +K+ + G S +
Sbjct: 330 KAGQENCRFGFVHFAERSSAMKALKNTEKYEIDGHILGCSLAKPQADKKFSGGSNSQKSA 389
Query: 373 VHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGR 432
+ PS P GYG AG QP+ YGRG AG M+PM+LPDGR
Sbjct: 390 LLPSYPPWVGYGL-------LGGAPGAGYGAAGFGQPLTYGRGLTSAGTAMMPMLLPDGR 442
Query: 433 IGYVLQQPGVQMPLPPPRPRRVERGPGGRGASSGGSDGSSGRR-YRPY 479
IGYVLQQPG+Q PP +PR G G D GRR Y PY
Sbjct: 443 IGYVLQQPGMQPYTPPSQPRSDRSGGGSTSGGRHSGDRGYGRRWYNPY 490
>gi|125533975|gb|EAY80523.1| hypothetical protein OsI_35702 [Oryza sativa Indica Group]
Length = 468
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 227/391 (58%), Positives = 285/391 (72%), Gaps = 16/391 (4%)
Query: 90 KEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAF 149
K K D+LLALPP GSEVFIGGLP+D +EEDLR+LC+ GE++EV L+KDK++ E+KGFAF
Sbjct: 93 KRKWDELLALPPQGSEVFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAF 152
Query: 150 VAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
V F +K+ A+RAI+EL K+ KG+T+RCS+S+ +RLF+GNVPK E+E RK+I+ GP
Sbjct: 153 VNFTAKDAAQRAIEELHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLGEEELRKIIQGKGP 212
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST 269
GV IE+ KD PSRNRGF FV YYN+ACADY+RQK+++ NFK+DG+ TVSWAEPK +
Sbjct: 213 GVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYARQKLSAPNFKVDGSQLTVSWAEPKGS 272
Query: 270 PDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYA 328
S++AA+QVK +YVKNLPEN + +++KE+F++HGEVTKVV PP K G KRDFGF+H+A
Sbjct: 273 -SDSSSAAAQVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFA 331
Query: 329 ERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAG 388
ERSSALKA+K +EKYE DGQVLEV++A+P +K+ + + A P YG
Sbjct: 332 ERSSALKAVKGSEKYEFDGQVLEVSMAKPLGDKKPDHSFKPAGA---PNFPLPPYG---- 384
Query: 389 TAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMPLPP 448
AY G G G QPMIYGRG PAGM MVPMVLPDGR+GYVLQQPG P PP
Sbjct: 385 -AYMGDPYGAYGGGGPGFNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQPGGIPPPPP 443
Query: 449 PRPRRVERGPGGRGASSGGSDGSSGRRYRPY 479
R G S G +GS GRRYRPY
Sbjct: 444 MRRGDRRDG------GSRGGEGSHGRRYRPY 468
>gi|242080305|ref|XP_002444921.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
gi|241941271|gb|EES14416.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
Length = 484
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/394 (56%), Positives = 285/394 (72%), Gaps = 12/394 (3%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
EDE+ K D+LLALPPHGS+VFIGGLP+D +E+DLR+LCEP+GE++EV L KDKD+ E+KG
Sbjct: 102 EDERSKWDELLALPPHGSQVFIGGLPRDITEDDLRELCEPLGEIYEVRLTKDKDTNENKG 161
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIED 206
FAFV F K+ A+RAI+++ +++KG+T+RCS+S+ +RLFIGNVPK +E+E +I+
Sbjct: 162 FAFVTFTDKDAAQRAIEDVQDREYKGRTLRCSLSQAKHRLFIGNVPKGLSEEELTNIIKG 221
Query: 207 VGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEP 266
GPGV IE+ KD P+RNRGF FV YYN+ACA+Y+R K++S NFK+DG+ TVSWAEP
Sbjct: 222 KGPGVVNIEMFKDQHDPNRNRGFLFVEYYNHACAEYARLKLSSRNFKVDGSQLTVSWAEP 281
Query: 267 KSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFI 325
K D S+AAA QVK +YVKNLPEN + +++K+LF +HGEVTK+V PP K+G KRDFGF+
Sbjct: 282 KGQTDPSSAAA-QVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKRDFGFV 340
Query: 326 HYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGS 385
H+AERSSALKA+K +EKYEIDGQVLEV++A+P +K+ + + G + YG
Sbjct: 341 HFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLADKKPDHSHRSGGGPNYP---LPPYGG 397
Query: 386 FAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMP 445
G G G QPMIYGRG PAGM MVPMVLPDGR+GYVLQQPG
Sbjct: 398 GGGYMGDPYGAYGGGGGGPAYNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQPGGMP- 456
Query: 446 LPPPRPRRVERGPGGRGASSGGSDGSSGRRYRPY 479
P R G R SS G +G S RRYRPY
Sbjct: 457 -----PPPPPRRGGDRRDSSRGGEGHS-RRYRPY 484
>gi|326497929|dbj|BAJ94827.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 469
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/357 (59%), Positives = 275/357 (77%), Gaps = 13/357 (3%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
E+EK K ++LLALPP GSEVF+GGLP+D +EEDLR LCEP+GE+FEV L+KDK++ E+KG
Sbjct: 92 EEEKMKWEELLALPPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKG 151
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIED 206
FAFV F +K+VA+ AI+EL KD KG+T+RCS+S+ +RLF+GNVPK +E+E +I+
Sbjct: 152 FAFVTFTAKDVAQHAIEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKG 211
Query: 207 VGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEP 266
GPGV IE+ KD PSRNRGF FV YYN+ACADY+RQK++S +FK+DG+ TVSWAEP
Sbjct: 212 KGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHACADYARQKLSSPDFKVDGSQLTVSWAEP 271
Query: 267 KSTPDHSAAA---ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDF 322
K + S+ + A+QVK +YVKNLPEN + +++K+LF+ HGEVTK+V PP K+G KRDF
Sbjct: 272 KGSSSSSSDSSSPAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDF 331
Query: 323 GFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAG 382
GF+H+AERSSALKA+K +EKYEIDGQVLEV++A+P ++K+ + +S G PS P
Sbjct: 332 GFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPD--HSFKPGGAPS-YPLPP 388
Query: 383 YGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQ 439
YG + G YG+ G G QPMIYGRG PAGM MVPMVLPDGR+GYVLQQ
Sbjct: 389 YGGYMGDPYGAYGG------GPGFNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQ 439
>gi|356539254|ref|XP_003538114.1| PREDICTED: APOBEC1 complementation factor-like [Glycine max]
Length = 505
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 227/426 (53%), Positives = 301/426 (70%), Gaps = 30/426 (7%)
Query: 67 SHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEP 126
+H + E VED EDEK+KH +LL++PPHGSEV+IGG+P AS+EDL+ LCE
Sbjct: 97 NHSSDETKVED---------EDEKKKHAELLSIPPHGSEVYIGGIP-HASDEDLKSLCER 146
Query: 127 IGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRL 186
IGEV EV ++K KDS E+KGF FV FRS E+A +AI+EL + +F GK I+CS S+ +RL
Sbjct: 147 IGEVAEVRIMKGKDSSENKGFGFVTFRSVELASKAIEELNNTEFMGKKIKCSKSQAKHRL 206
Query: 187 FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQK 246
FIGNVP+SW ++ +K++ ++GPGV +EL+KD + + NRGFAF+ YYN+ACA+YSRQK
Sbjct: 207 FIGNVPRSWGVEDLKKIVTEIGPGVTGVELVKDMKNTNNNRGFAFIDYYNHACAEYSRQK 266
Query: 247 MTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGE 306
M S FKL N PTVSWA+PK+ ++AASQVKA+YVKNLP+N T +QLK+LF+RHG+
Sbjct: 267 MMSPTFKLGENAPTVSWADPKNA---ESSAASQVKAVYVKNLPKNVTQEQLKKLFERHGK 323
Query: 307 VTKVVTPPGKSG--KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+TKVV PP KSG K GF+H+AERS+A+KA+K+TE+YE++GQ+L+ +LA+PQ ++++
Sbjct: 324 ITKVVLPPAKSGQEKNRIGFVHFAERSNAMKALKNTERYELEGQLLQCSLAKPQADQKSG 383
Query: 365 G--VYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMH 422
G G+ PS PH GYG G G + A GL QPM+YG GQ P+GM
Sbjct: 384 GSNTQKPGPGLLPSYPPHVGYGLVGGAYGGLGAG----YAAPGLAQPMLYGGGQTPSGMA 439
Query: 423 MVPMVLPDGRIGYVLQQPGVQMPLPPPRPRRVERGPGGR------GASSGG---SDGSSG 473
++PM+L DGRIGYVLQQPG+Q PP R G G G+SS G +DG G
Sbjct: 440 IMPMLLADGRIGYVLQQPGMQPQAPPSHHRGGRGGGGSGSGNRNVGSSSKGRHNNDGGHG 499
Query: 474 RRYRPY 479
RRYRPY
Sbjct: 500 RRYRPY 505
>gi|297740122|emb|CBI30304.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/397 (52%), Positives = 283/397 (71%), Gaps = 14/397 (3%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
++E +H +LLALPPHGSEV++GG+P +ASEEDLR CEP+GEV EV ++K KDS E+KG
Sbjct: 75 DNENRRHAELLALPPHGSEVYLGGIPNNASEEDLRGFCEPVGEVTEVRILKGKDSAETKG 134
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIED 206
+AFV FR+KE+A +A++EL + + KG+ I+CS S+ +RLFI NVP++W E++ +KV+ +
Sbjct: 135 YAFVTFRTKELASKAMEELNNAEIKGRKIKCSASQVKHRLFISNVPRTWEEEDMKKVVTE 194
Query: 207 VGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEP 266
+GPGV+ ++L KDPQ SRNRGFAF+ YYN+ACA+YSR+KM++ FKLD N TVSWA+P
Sbjct: 195 IGPGVNLVDLWKDPQNSSRNRGFAFIEYYNHACAEYSRKKMSNPKFKLDNNASTVSWADP 254
Query: 267 KSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD--FGF 324
K+ ++AASQVKA+Y+KNLP+ T QL+ELF +HG++TKVV PP K+G+ + FGF
Sbjct: 255 KNV---ESSAASQVKAVYIKNLPKYMTQDQLRELFGQHGKITKVVIPPAKAGQENCRFGF 311
Query: 325 IHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR-TEGVYSCAAGVHPSGLPHAGY 383
+H+AERSSA+KA+K+TEKYEIDG +L +LA+PQ +K+ + G S + + PS P GY
Sbjct: 312 VHFAERSSAMKALKNTEKYEIDGHILGCSLAKPQADKKFSGGSNSQKSALLPSYPPWVGY 371
Query: 384 GSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQ 443
G AG QP+ YGRG AG M+PM+LPDGRIGYVLQQPG+Q
Sbjct: 372 GL-------LGGAPGAGYGAAGFGQPLTYGRGLTSAGTAMMPMLLPDGRIGYVLQQPGMQ 424
Query: 444 MPLPPPRPRRVERGPGGRGASSGGSDGSSGRR-YRPY 479
PP +PR G G D GRR Y PY
Sbjct: 425 PYTPPSQPRSDRSGGGSTSGGRHSGDRGYGRRWYNPY 461
>gi|356542762|ref|XP_003539834.1| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Glycine
max]
Length = 501
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 222/422 (52%), Positives = 293/422 (69%), Gaps = 30/422 (7%)
Query: 72 EDAVEDEDKRTASIS-EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEV 130
+DA+++ A + EDEK KH +LL+LPPHGSEV+IGG+P AS+EDL+ LCE IGEV
Sbjct: 96 DDAMQNHSSDEAKVEDEDEKRKHAELLSLPPHGSEVYIGGIP-HASDEDLKSLCERIGEV 154
Query: 131 FEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGN 190
EV ++K KDS E+KGF FV F S E+A +AI+EL + +F GK I+CS S+ +RLFIGN
Sbjct: 155 AEVRIMKGKDSSENKGFGFVTFTSVELASKAIEELNNTEFMGKKIKCSKSQAKHRLFIGN 214
Query: 191 VPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSA 250
VP+SW ++ +K++ ++GPG D + + NRGFAF+ YYN+ACA+YSRQKM S
Sbjct: 215 VPRSWGVEDLKKIVTEIGPG--------DMKNTNNNRGFAFIDYYNHACAEYSRQKMMSP 266
Query: 251 NFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV 310
FKL N PTVSWA+PK+ ++AASQVKA+YVKNLP+N T +QLK+LF+RHG++TKV
Sbjct: 267 TFKLGENAPTVSWADPKNA---ESSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKV 323
Query: 311 VTPPGKSG--KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEG--V 366
V PP KSG K GF+H+AERS+A+KA+K+TE+YE++GQ+LE +LA+PQ ++++ G
Sbjct: 324 VLPPAKSGQEKNRIGFVHFAERSNAMKALKNTERYELEGQLLECSLAKPQADQKSGGSNT 383
Query: 367 YSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPM 426
G+ PS PH GYG G + A GL QP++YG GQ PAGM M+PM
Sbjct: 384 QKPGPGLLPSYPPHVGYGLVGGAYGALGAG----YAAPGLAQPLLYGGGQTPAGMAMMPM 439
Query: 427 VLPDGRIGYVLQQPGVQMPLPPPRPRRVERGPGGR------GASSGG---SDGSSGRRYR 477
+L DGRIGYVLQQPG+Q PP R G G G+SS G +DG GRRYR
Sbjct: 440 LLADGRIGYVLQQPGMQPQAPPSHHRGGRGGGGSGSGNRNAGSSSKGRHNNDGGHGRRYR 499
Query: 478 PY 479
PY
Sbjct: 500 PY 501
>gi|224138490|ref|XP_002322827.1| predicted protein [Populus trichocarpa]
gi|222867457|gb|EEF04588.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/358 (56%), Positives = 272/358 (75%), Gaps = 11/358 (3%)
Query: 88 DEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGF 147
DE+ KH +LLALPPHGSEV++GG+P DASE DL++ CE IGEV EV ++K KDS ESKG+
Sbjct: 73 DEQRKHAELLALPPHGSEVYLGGIPPDASEGDLKEFCESIGEVTEVRIMKGKDSSESKGY 132
Query: 148 AFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDV 207
AFV+FR+KE+A +AI+EL + +FKGK ++CS S+ N+RLFIGNVP++W E+ +K ++ +
Sbjct: 133 AFVSFRTKELASKAIEELNNTEFKGKKVKCSTSQANHRLFIGNVPRNWGEENMKKAVKKI 192
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK 267
GPGV+++EL+KDPQ PSRNRGFAF+ YYN+ACA+YSR+KM++ FKLD N PTVSWA+PK
Sbjct: 193 GPGVNSVELLKDPQNPSRNRGFAFIEYYNHACAEYSRKKMSNPEFKLDDNAPTVSWADPK 252
Query: 268 STPDHSAAAASQ----VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG--KRD 321
+ ++AASQ VKA+YVKNLPE+ T L++LF+ HG+VTKVV PP K G K
Sbjct: 253 NA---GSSAASQVCCSVKAVYVKNLPEDITQDGLRQLFEHHGKVTKVVLPPAKPGHEKSR 309
Query: 322 FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR-TEGVYSCAAGVHPSGLPH 380
FGF+H+AERSSA+KA+K+TEKYEIDG VL+ +LA+P T+++ + G S + ++ + P
Sbjct: 310 FGFVHFAERSSAMKALKNTEKYEIDGHVLDCSLAKPHTDQKPSGGPNSQNSSLYSNFPPQ 369
Query: 381 AGYG-SFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVL 437
GYG + G AG QP+IYGRG PAGM M+PM+LPDGRIGYVL
Sbjct: 370 LGYGLAGGTYGGFGAGFGGAGFGAAGFTQPVIYGRGPTPAGMAMMPMLLPDGRIGYVL 427
>gi|115481176|ref|NP_001064181.1| Os10g0151800 [Oryza sativa Japonica Group]
gi|18425248|gb|AAL69426.1|AC098565_8 Putative RNA-binding protein [Oryza sativa]
gi|31430199|gb|AAP52145.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113638790|dbj|BAF26095.1| Os10g0151800 [Oryza sativa Japonica Group]
gi|125574047|gb|EAZ15331.1| hypothetical protein OsJ_30749 [Oryza sativa Japonica Group]
Length = 472
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 224/395 (56%), Positives = 285/395 (72%), Gaps = 16/395 (4%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
E+EK K D+LLALPP GSEVFIGGLP+D +E+DL +LCE GE+ EV L+KDK++ E+KG
Sbjct: 92 EEEKRKWDELLALPPQGSEVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKG 151
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIED 206
FAFV F K+ A+RAI++L K+ KG+T+RCS+S+ +RLF+GNVPK +E E R +I+
Sbjct: 152 FAFVTFTGKDGAQRAIEDLHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLSEDELRNIIQG 211
Query: 207 VGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEP 266
GPGV IE+ KD PSRNRGF FV YYN+ACADY++QK+++ NFK+DG+ TVSWAEP
Sbjct: 212 KGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQLTVSWAEP 271
Query: 267 K-STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGF 324
K S+ S++AA+QVK +YVKNLPEN + +++KE+F+ HGEVTKVV PP K+G KRDFGF
Sbjct: 272 KGSSSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKAGNKRDFGF 331
Query: 325 IHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYG 384
+H+AERSSALKA+K +EKYEIDGQVLEV++A+P +K+ + + P G P+
Sbjct: 332 VHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLGDKKPDHSFK------PGGAPNFPLP 385
Query: 385 SFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQM 444
+ G Y G G G QPMIYGRG PAGM MVPMVLPDGR+GYVLQQPG
Sbjct: 386 PYGG--YMGDPYGAYGGGGPGFNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQPGGIP 443
Query: 445 PLPPPRPRRVERGPGGRGASSGGSDGSSGRRYRPY 479
P R R S G +GS GRRYRPY
Sbjct: 444 ------PPPPPRRGDRRDGGSRGGEGSHGRRYRPY 472
>gi|302770274|ref|XP_002968556.1| hypothetical protein SELMODRAFT_169951 [Selaginella moellendorffii]
gi|302788312|ref|XP_002975925.1| hypothetical protein SELMODRAFT_175329 [Selaginella moellendorffii]
gi|300156201|gb|EFJ22830.1| hypothetical protein SELMODRAFT_175329 [Selaginella moellendorffii]
gi|300164200|gb|EFJ30810.1| hypothetical protein SELMODRAFT_169951 [Selaginella moellendorffii]
Length = 477
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 217/485 (44%), Positives = 313/485 (64%), Gaps = 33/485 (6%)
Query: 8 EERVDLDEDDYMEEIDDDPEEQLDDDGEVGRDGNVKQNDEDEEYDAETSKEDQSPGANGS 67
+ER+D+D D E++ DD + + ++ + ++G +EDE + E D G
Sbjct: 13 DERIDIDGDVEPEDVIDDETDGIVEEEKADQEGLDLDMNEDEGGEDEAYTTDHENGLQ-- 70
Query: 68 HINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPI 127
N E+A D + S+ D+ E+ LL+ PPHGSEVFIGG+ +D +E+DLR+LC P
Sbjct: 71 --NGENASADLGE---SVDVDDDEETKSLLSRPPHGSEVFIGGVTRDTNEDDLRELCSPC 125
Query: 128 GEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLF 187
GE+FEV ++KDK++G +KG+AFV + ++E A++AI+ L + + KG+ +R S S+ +RLF
Sbjct: 126 GEIFEVRILKDKETGNNKGYAFVTYTNRETAEKAIETLANSELKGRKLRFSHSQAKHRLF 185
Query: 188 IGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKM 247
IGN+PKSW E K++ + GPGV+ +EL+KDP+ P +NRGFAFV YYN+ACAD++R+ M
Sbjct: 186 IGNIPKSWDTPELEKILAEEGPGVEGVELLKDPRNPGKNRGFAFVEYYNHACADHARKLM 245
Query: 248 TSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEV 307
+ ++F+L N PTVSWA+P++ + AA SQ+K +YV+NLPE T +QL+ LF+ HGE+
Sbjct: 246 SRSSFRLGNNVPTVSWADPRTGAE--PAATSQIKVVYVRNLPEAVTEEQLRGLFEHHGEI 303
Query: 308 TKVVTPPGKSG--KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR--T 363
TKVV P K G KRDFGF+H+A+R+ ALKAI+ TEKYE++G+VLE +LA+P K+
Sbjct: 304 TKVVLPQSKPGQPKRDFGFVHFADRNDALKAIEKTEKYELEGRVLESSLAKPPVEKKGMD 363
Query: 364 EGVYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHM 423
+ + G+ P S+ Y ++ TG G QP+IYGRG PAGM M
Sbjct: 364 QPLAPQRLGILSQLQPRTAAYSYPVDIYNNIGTGGGYGQNR-YNQPLIYGRGPPPAGMTM 422
Query: 424 VPMVLPDGRIGYVLQQPGVQMPLPPPRPRRVERGPGGRGA---------SSGGSDGSSGR 474
VP+ LPDGR+GYVLQQPG+Q + GRG ++ GS GSS R
Sbjct: 423 VPIQLPDGRLGYVLQQPGIQQ----------QGSQFGRGVLSSSYRSSSNNAGSGGSSSR 472
Query: 475 RYRPY 479
RYRPY
Sbjct: 473 RYRPY 477
>gi|218184150|gb|EEC66577.1| hypothetical protein OsI_32766 [Oryza sativa Indica Group]
Length = 496
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 224/415 (53%), Positives = 285/415 (68%), Gaps = 32/415 (7%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
E+EK K D+LLALPP GSEVFIGGLP+D +E+DL +LCE GE+ EV L+KDK++ E+KG
Sbjct: 92 EEEKRKWDELLALPPQGSEVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKG 151
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIED 206
FAFV F K+ A+ AI++L K+ KG+T+RCS+S+ +RLF+GNVPK +E E R +I+
Sbjct: 152 FAFVTFTGKDGAQHAIEDLHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLSEDELRNIIQG 211
Query: 207 VGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEP 266
GPGV IE+ KD PSRNRGF FV YYN+ACADY++QK+++ NFK+DG+ TVSWAEP
Sbjct: 212 KGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQLTVSWAEP 271
Query: 267 K-STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGF 324
K S+ S++AA+QVK +YVKNLPEN + +++KE+F+ HGEVTKVV PP K+G KRDFGF
Sbjct: 272 KGSSSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKAGNKRDFGF 331
Query: 325 IHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYG 384
+H+AERSSALKA+K EKYEIDGQVLEV++A+P +K+ + + + P+ GY
Sbjct: 332 VHFAERSSALKAVKGNEKYEIDGQVLEVSMAKPLGDKKPDHSFKPGGAPNFPLPPYGGYM 391
Query: 385 --------------------SFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMV 424
G G S G AA +QPMIYGRG PAGM MV
Sbjct: 392 GDPYGAYGGGGPGFNQSQVPKLTGAQGGRTSHEPGGAA----EQPMIYGRGPAPAGMRMV 447
Query: 425 PMVLPDGRIGYVLQQPGVQMPLPPPRPRRVERGPGGRGASSGGSDGSSGRRYRPY 479
PMVLPDGR+GYVLQQPG P R R S G +GS GRRYRPY
Sbjct: 448 PMVLPDGRLGYVLQQPGGIP------PPPPPRRGDRRDGGSRGGEGSHGRRYRPY 496
>gi|356503817|ref|XP_003520699.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Glycine max]
Length = 464
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/375 (54%), Positives = 274/375 (73%), Gaps = 19/375 (5%)
Query: 75 VEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVG 134
+ D+ + + E EK+KH +LLALPPHGSEV+IGG+P++ SEEDLR C+ +GEV EV
Sbjct: 74 LSDKTRVADTKDEVEKKKHAELLALPPHGSEVYIGGIPQNVSEEDLRVFCQSVGEVSEVR 133
Query: 135 LVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKS 194
++K K+SGE+KG+AFV F +KE+A +AI+EL + +FKGK I+CS S+ ++LFIGNVPK
Sbjct: 134 IMKGKESGEAKGYAFVTFMTKELASKAIEELNNSEFKGKRIKCSTSQVKHKLFIGNVPKY 193
Query: 195 WTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKL 254
WTE + +KV+ ++GPGV +EL+KDPQ SRNRG+AF+ YYN+ACA+YSRQKM+++NFKL
Sbjct: 194 WTEGDMKKVVAEIGPGVICVELLKDPQNSSRNRGYAFIEYYNHACAEYSRQKMSNSNFKL 253
Query: 255 DGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPP 314
N PTVSWA+P+++ ++A S VK++YVKNLPEN T +LKELF+ HG++TKVV P
Sbjct: 254 GSNAPTVSWADPRNS---ESSAISLVKSVYVKNLPENITQDRLKELFEHHGKITKVVLPS 310
Query: 315 GKSG--KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAG 372
KSG K FGF+H+AERSSA+KA+K+TEKYEIDGQ+LE +LA+PQ N + +
Sbjct: 311 AKSGQEKSRFGFVHFAERSSAMKALKNTEKYEIDGQLLECSLAKPQANSQKPALL----- 365
Query: 373 VHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGR 432
P+ PH GYG G AG QP++YG G P GM M+PM+L DGR
Sbjct: 366 --PTYPPHLGYGMVGGAIGAG-------YGAAGFAQPLMYGPGPTPGGMAMMPMMLSDGR 416
Query: 433 IGYVLQQPGVQMPLP 447
I Y++QQPG Q P P
Sbjct: 417 IAYIVQQPGFQQPAP 431
>gi|168039508|ref|XP_001772239.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676409|gb|EDQ62892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 507
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 219/478 (45%), Positives = 309/478 (64%), Gaps = 40/478 (8%)
Query: 21 EIDDDPEEQLDDDGEVGRDGNVKQNDEDE---EYDAETSKEDQSPGANGSHINTEDA-VE 76
++D D E Q DD + +D +V D D E D ++E +H+ + A VE
Sbjct: 51 DLDIDVEAQEGDDSQEDQDIDVLNGDHDHGITEADLAAAEE------TDAHVGADVAIVE 104
Query: 77 DEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLV 136
D++++ A EK LL PPHGSE+F+GG+ +D +EEDLR LC G+V+EV L+
Sbjct: 105 DKEEKDA-------EKSGDLLKRPPHGSEIFVGGITRDTTEEDLRTLCSSCGDVYEVRLL 157
Query: 137 KDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWT 196
KDKD+G++KG+AFV F ++E A++AI+ L + KG+ +R S S++ +RLF+GN+PK+W
Sbjct: 158 KDKDTGQNKGYAFVTFLNEECAEKAIETLNDSEVKGRKLRFSQSQSKHRLFVGNIPKTWE 217
Query: 197 EKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG 256
++E V+ + GPG+ ++EL+KDP+ P RNRGF FV YYN+ACA+++R++M+ ++F+L
Sbjct: 218 KEELESVLSEQGPGIQSVELLKDPKTPGRNRGFGFVEYYNHACAEHARREMSKSSFRLGT 277
Query: 257 NTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGK 316
N PT+SWA+P+S PD +A SQVK +YV+NLP++ T +QL++LF+RHGE+ KVV P K
Sbjct: 278 NAPTISWADPRSGPD--VSAMSQVKVVYVRNLPDSVTEEQLQKLFERHGEIVKVVLPATK 335
Query: 317 SG--KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSC----A 370
G KRDFGF+H+++R+ ALKAI+ TE YE++G++LE +LA+P KR G
Sbjct: 336 PGQAKRDFGFVHFSDRAQALKAIEKTEVYELEGRILETSLAKPPAEKRAAGGEPAYPPQR 395
Query: 371 AGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPD 430
AG+ P +GYG + G Y SV G G QP+IYGRG PAGM MVPM+LPD
Sbjct: 396 AGLLPQHQNRSGYG-YGGDVYNSVGGAYGQP--RGYNQPIIYGRGLAPAGMTMVPMMLPD 452
Query: 431 GRIGYVLQQP-GVQMPLPPPRPRRVERGPGG--------RGASSGGSDGSSGRRYRPY 479
GR+GYVLQQP G Q P P R RG G S S GRRYRPY
Sbjct: 453 GRVGYVLQQPSGGQ---GGPAPYRGGRGSHGLLPFRHGGGSGGSAASGAGGGRRYRPY 507
>gi|124360410|gb|ABD33357.2| RNA-binding region RNP-1 (RNA recognition motif) [Medicago
truncatula]
Length = 742
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 196/368 (53%), Positives = 260/368 (70%), Gaps = 10/368 (2%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+DEK+KH +LL+LP H SEV++GG+P DA EDL++ CE IGEV +V + K KD+ E++G
Sbjct: 330 DDEKKKHAELLSLPHHKSEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRG 389
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIED 206
FAFV +RS E+A +AI EL + +FK I+CS S+ +RLFIGN+P+SW EK+ +KV+ D
Sbjct: 390 FAFVTYRSIELASKAIKELNNTEFKAGKIKCSKSQAKSRLFIGNIPRSWGEKDLKKVVSD 449
Query: 207 VGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEP 266
+GPGV +ELIKD + S NRG+AF+ Y+NN CA+YSRQKMTS +FKL N PTV+WAEP
Sbjct: 450 IGPGVTAVELIKDMKNISNNRGYAFIDYHNNQCAEYSRQKMTSPSFKLGDNFPTVNWAEP 509
Query: 267 KSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG--KRDFGF 324
K+ ++A+SQVK +YVKNLP+N T +QLK+LF+ HG++TKVV PP K G K GF
Sbjct: 510 KNA---DSSASSQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGF 566
Query: 325 IHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYG 384
+H+AERS+A+KA+K+TEKY +DGQ+LE +LA+ Q + + G P PH GYG
Sbjct: 567 VHFAERSNAMKALKNTEKYVLDGQILECSLAKQQADPKAVVSNIQTQGSLPRYPPHVGYG 626
Query: 385 SFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQ- 443
G YG + G G GL QP YG GQ P G+ M+P +L D RI YVLQQPG+Q
Sbjct: 627 -LDGNPYGVLGAGYG---APGLAQPFTYGLGQTPGGIAMMPKLLVDRRIRYVLQQPGLQP 682
Query: 444 MPLPPPRP 451
P P P
Sbjct: 683 HPTHPAHP 690
>gi|357501821|ref|XP_003621199.1| RNA-binding protein [Medicago truncatula]
gi|355496214|gb|AES77417.1| RNA-binding protein [Medicago truncatula]
Length = 782
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 196/368 (53%), Positives = 260/368 (70%), Gaps = 10/368 (2%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+DEK+KH +LL+LP H SEV++GG+P DA EDL++ CE IGEV +V + K KD+ E++G
Sbjct: 365 DDEKKKHAELLSLPHHKSEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRG 424
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIED 206
FAFV +RS E+A +AI EL + +FK I+CS S+ +RLFIGN+P+SW EK+ +KV+ D
Sbjct: 425 FAFVTYRSIELASKAIKELNNTEFKAGKIKCSKSQAKSRLFIGNIPRSWGEKDLKKVVSD 484
Query: 207 VGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEP 266
+GPGV +ELIKD + S NRG+AF+ Y+NN CA+YSRQKMTS +FKL N PTV+WAEP
Sbjct: 485 IGPGVTAVELIKDMKNISNNRGYAFIDYHNNQCAEYSRQKMTSPSFKLGDNFPTVNWAEP 544
Query: 267 KSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG--KRDFGF 324
K+ ++A+SQVK +YVKNLP+N T +QLK+LF+ HG++TKVV PP K G K GF
Sbjct: 545 KNA---DSSASSQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGF 601
Query: 325 IHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYG 384
+H+AERS+A+KA+K+TEKY +DGQ+LE +LA+ Q + + G P PH GYG
Sbjct: 602 VHFAERSNAMKALKNTEKYVLDGQILECSLAKQQADPKAVVSNIQTQGSLPRYPPHVGYG 661
Query: 385 SFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQ- 443
G YG + G G GL QP YG GQ P G+ M+P +L D RI YVLQQPG+Q
Sbjct: 662 -LDGNPYGVLGAGYG---APGLAQPFTYGLGQTPGGIAMMPKLLVDRRIRYVLQQPGLQP 717
Query: 444 MPLPPPRP 451
P P P
Sbjct: 718 HPTHPAHP 725
>gi|357511099|ref|XP_003625838.1| RNA-binding protein [Medicago truncatula]
gi|355500853|gb|AES82056.1| RNA-binding protein [Medicago truncatula]
Length = 477
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 205/404 (50%), Positives = 280/404 (69%), Gaps = 21/404 (5%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
E +K+KH +LLALPPHGSEV+IGG+P + SE+DLR C+ +GEV EV ++K K E+KG
Sbjct: 84 EADKKKHAELLALPPHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGK---EAKG 140
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIED 206
+AFV F++KE+A +A+ EL + +FKG+ I+CS S+ +RLFIG+VPK WT ++ +KV+
Sbjct: 141 YAFVTFKTKELASKALKELNNSEFKGRKIKCSPSQVKHRLFIGSVPKEWTVEDMKKVVAK 200
Query: 207 VGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEP 266
VGPGV ++EL+KDPQ+ SRNRGFAF+ Y+N+ACA+YSRQKM+++NFKLD N VSWA+P
Sbjct: 201 VGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADP 260
Query: 267 KSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG--KRDFGF 324
+ + ++++SQVKA+YVKNLPEN T +LKELF+ HG++TKV PP K+G K +GF
Sbjct: 261 R---NSESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGF 317
Query: 325 IHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVY-SCAAGVHPSGLPHAGY 383
+H+A+RSSA+KA+K+TEKYEI+GQ LE +LA+PQ ++++ G S + V P+ P G
Sbjct: 318 VHFADRSSAMKALKNTEKYEINGQTLECSLAKPQADQKSSGASNSFNSAVLPAYPPPLG- 376
Query: 384 GSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQ 443
G G AG P++YG G PAGM M+PM+LPDGRI YVLQQPG+Q
Sbjct: 377 ---YGMVGGGYGAVGAGYGAAGFAPPLMYGPGATPAGMTMMPMLLPDGRIAYVLQQPGLQ 433
Query: 444 MP-----LPPPRPRRVERGPGGRGASSGGSDGSSGR---RYRPY 479
P P P R +D S R RY PY
Sbjct: 434 QPSFQQHAPSPVSRHGRSSGVSSSGEKRSNDNSRNRGHCRYNPY 477
>gi|346703256|emb|CBX25354.1| hypothetical_protein [Oryza brachyantha]
Length = 503
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 197/369 (53%), Positives = 267/369 (72%), Gaps = 22/369 (5%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
EKEK+ +LLALPPHGSEV+ GG+ D S EDL+ LCEP+GEV EV ++K KD +S+G+A
Sbjct: 104 EKEKYAELLALPPHGSEVYFGGISSDISSEDLKKLCEPVGEVVEVRMMKGKD--DSRGYA 161
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG 208
FV FR+K++A A+ EL + KGK IR S S+ N+LFIGNVP SWT+ +FRK +E+VG
Sbjct: 162 FVTFRTKDLALEAVRELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTQDDFRKAVEEVG 221
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
PGV +L+K + +RNRG+ FV YYN+ACA+Y+RQKM++ FKLD N PTVSWA+PK
Sbjct: 222 PGVLKADLMKV-SSTNRNRGYGFVEYYNHACAEYARQKMSTPTFKLDTNAPTVSWADPK- 279
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD-FGFIHY 327
++ +A+ SQVK++YVKNLP+N T QLK LF+RHGE+TKVV PP + G + +GF+H+
Sbjct: 280 --NNDSASTSQVKSVYVKNLPKNVTQAQLKNLFERHGEITKVVLPPSRGGHDNRYGFVHF 337
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARP-QTNKRTEGV---YSCAAGVHPSGLPHAGY 383
+RS A++A+++TE+YE+ GQVL+ +LA+P T+K+ E V S A + PS P GY
Sbjct: 338 KDRSMAMRALQNTERYELAGQVLDCSLAKPAATDKKDERVSLPSSNGAPLLPS-YPPLGY 396
Query: 384 GSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQ 443
G SV + GVA A + QPM+Y + P G MVPM+LPDGR+ YV+QQPG Q
Sbjct: 397 GIM------SVPSAYGVAP-ASITQPMLYA-PRAPPGPAMVPMMLPDGRLVYVVQQPGGQ 448
Query: 444 MPL--PPPR 450
+PL PPP+
Sbjct: 449 LPLSSPPPQ 457
>gi|15231284|ref|NP_190834.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79314840|ref|NP_001030849.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|7669940|emb|CAB89227.1| putative RNA binding protein [Arabidopsis thaliana]
gi|51970792|dbj|BAD44088.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|51971921|dbj|BAD44625.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|115646718|gb|ABJ17093.1| At3g52660 [Arabidopsis thaliana]
gi|332645455|gb|AEE78976.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332645456|gb|AEE78977.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 471
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/360 (51%), Positives = 259/360 (71%), Gaps = 15/360 (4%)
Query: 90 KEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAF 149
K++H +LLALPPHGSEV++GG+P DA+E DL+ C IGEV EV ++++KDSG+ KG+AF
Sbjct: 78 KKRHVELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAF 137
Query: 150 VAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
V FRSK++A AID L + DF+GK I+CS ++ +RLF+GNVP++W E + +K +GP
Sbjct: 138 VTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIGP 197
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST 269
GV +EL K+PQ RNRGFAF+ YYN+ACA+YS+QKM++ +FKLD N PTVSWAE +
Sbjct: 198 GVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAE-SRS 256
Query: 270 PDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD--FGFIHY 327
++ASQVKALY+KNLP + T ++LK LF+ HG++ KVV PP K GK D +GF+HY
Sbjct: 257 GGGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHY 316
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGL-----PHAG 382
AER+S ++A+K+TE+YEIDG +L+ LA+PQ +++T + V S L P
Sbjct: 317 AERTSVMRALKNTERYEIDGHMLDCTLAKPQADQKTNT--NTVQNVQKSQLQPNYPPLLS 374
Query: 383 YGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGV 442
YG A + +G++ G G +A QP+++ G GM M+P++LPDGRIGYVLQQPG+
Sbjct: 375 YG-MAPSPFGALG-GFGASA---YSQPLMHAGGHAAGGMSMMPIMLPDGRIGYVLQQPGL 429
>gi|326517573|dbj|BAK03705.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 372
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/343 (56%), Positives = 252/343 (73%), Gaps = 13/343 (3%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
P + + G+ +EEDLR LCEP+GE+FEV L+KDK++ E+KGFAFV F +K+VA+
Sbjct: 9 PRRARRYSWGVSPVTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQH 68
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDP 220
AI+EL KD KG+T+RCS+S+ +RLF+GNVPK +E+E +I+ GPGV IE+ KD
Sbjct: 69 AIEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDL 128
Query: 221 QAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA---A 277
PSRNRGF FV YYN+ACADY+RQK++S +FK+DG+ TVSWAEPK + S+ + A
Sbjct: 129 HNPSRNRGFLFVEYYNHACADYARQKLSSPDFKVDGSQLTVSWAEPKGSSSSSSDSSSPA 188
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERSSALKA 336
+QVK +YVKNLPEN + +++K+LF+ HGEVTK+V PP K+G KRDFGF+H+AERSSALKA
Sbjct: 189 AQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKA 248
Query: 337 IKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYGSVST 396
+K +EKYEIDGQVLEV++A+P ++K+ + +S G PS P YG + G
Sbjct: 249 VKGSEKYEIDGQVLEVSMAKPLSDKKPD--HSFKPGGAPS-YPLPPYGGYMG------DP 299
Query: 397 GLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQ 439
G G QPMIYGRG PAGM MVPMVLPDGR+GYVLQQ
Sbjct: 300 YGAYGGGPGFNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQ 342
>gi|297816558|ref|XP_002876162.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297322000|gb|EFH52421.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 470
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/360 (50%), Positives = 260/360 (72%), Gaps = 15/360 (4%)
Query: 90 KEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAF 149
K++H +LLALP HGSEV++GG+P DA+E DL+ C+ IGEV EV ++++K+SG+ KG+AF
Sbjct: 77 KKRHVELLALPSHGSEVYLGGIPTDATEGDLKGFCQSIGEVTEVRIMREKESGDGKGYAF 136
Query: 150 VAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
V FR+K++A +AID L S +F+GK I+CS ++ +RLF+GNVP++WTE + +K +GP
Sbjct: 137 VTFRNKDLASKAIDTLNSTEFRGKRIKCSTTQAKHRLFLGNVPRNWTESDIKKAANRIGP 196
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST 269
GV +EL K+PQ RNRGFAF+ Y+N+ACA+YS+QKM++ +FKLD N PTVSWAE +
Sbjct: 197 GVQIVELPKEPQNMGRNRGFAFIEYHNHACAEYSKQKMSNPSFKLDDNAPTVSWAE-SRS 255
Query: 270 PDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD--FGFIHY 327
++ASQVKALY+KNLP + T ++LK LF+ HG++ KVV PP K GK D +GF+HY
Sbjct: 256 GGGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHY 315
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGL-----PHAG 382
AER+S ++A+K+TE+YEIDG +L+ LA+PQ +++ + V S L P
Sbjct: 316 AERTSVMRALKNTERYEIDGHMLDCTLAKPQADQKANA--NTVQNVQKSQLQPNYPPLLS 373
Query: 383 YGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGV 442
YG A + +G++ G G +A QP+++ G GM M+P++LPDGRIGYVLQQPG+
Sbjct: 374 YG-MAPSPFGALG-GFGASA---YSQPLMHAGGHAAGGMSMMPIMLPDGRIGYVLQQPGL 428
>gi|346703741|emb|CBX24409.1| hypothetical_protein [Oryza glaberrima]
Length = 502
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/370 (52%), Positives = 263/370 (71%), Gaps = 24/370 (6%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
EK KH +LLALPPHGSEV++GG+ D S EDL+ LCEP+GEV EV +++ KD +S+G+A
Sbjct: 96 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 153
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG 208
FV FR+K +A +A+ EL + KGK IR S S+ N+LFIGNVP SWT+ +FRKV+E+VG
Sbjct: 154 FVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG 213
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
PGV +L+K A +RNRG+ FV YYN+ACA+Y+RQ+M+S FKLD N PTVSWA+PK
Sbjct: 214 PGVLKADLMKVSSA-NRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPK- 271
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD-FGFIHY 327
++ +A+ SQVK++YVKNLP+N T QLK LF+ HGE+ KVV PP + G + +GF+H+
Sbjct: 272 --NNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHF 329
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARP----QTNKRTEGVYSCAAGVHPSGLPHAGY 383
+RS A++A+++TE+YE+DGQVL+ +LA+P + + R S A + PS P GY
Sbjct: 330 KDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPS-YPPLGY 388
Query: 384 GSFAGT-AYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGV 442
G + AYG AA A QPM+Y + P G MVPM+LPDGR+ YV+QQPG
Sbjct: 389 GIMSVPGAYG--------AAPASTAQPMLYA-PRAPPGAAMVPMMLPDGRLVYVVQQPGG 439
Query: 443 QMPL--PPPR 450
Q+PL PPP+
Sbjct: 440 QLPLASPPPQ 449
>gi|108862165|gb|ABA95754.2| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108862166|gb|ABG21876.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 502
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/370 (52%), Positives = 263/370 (71%), Gaps = 24/370 (6%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
EK KH +LLALPPHGSEV++GG+ D S EDL+ LCEP+GEV EV +++ KD +S+G+A
Sbjct: 96 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 153
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG 208
FV FR+K +A +A+ EL + KGK IR S S+ N+LFIGNVP SWT+ +FRKV+E+VG
Sbjct: 154 FVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG 213
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
PGV +L+K A +RNRG+ FV YYN+ACA+Y+RQ+M+S FKLD N PTVSWA+PK
Sbjct: 214 PGVLKADLMKVSSA-NRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPK- 271
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD-FGFIHY 327
++ +A+ SQVK++YVKNLP+N T QLK LF+ HGE+ KVV PP + G + +GF+H+
Sbjct: 272 --NNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHF 329
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARP----QTNKRTEGVYSCAAGVHPSGLPHAGY 383
+RS A++A+++TE+YE+DGQVL+ +LA+P + + R S A + PS P GY
Sbjct: 330 KDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPS-YPPLGY 388
Query: 384 GSFAGT-AYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGV 442
G + AYG AA A QPM+Y + P G MVPM+LPDGR+ YV+QQPG
Sbjct: 389 GIMSVPGAYG--------AAPASTAQPMLYA-PRAPPGAAMVPMMLPDGRLVYVVQQPGG 439
Query: 443 QMPL--PPPR 450
Q+PL PPP+
Sbjct: 440 QLPLASPPPQ 449
>gi|125535710|gb|EAY82198.1| hypothetical protein OsI_37401 [Oryza sativa Indica Group]
Length = 783
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/371 (52%), Positives = 263/371 (70%), Gaps = 22/371 (5%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
EK KH +LLALPPHGSEV++GG+ D S EDL+ LCEP+GEV EV +++ KD +S+G+A
Sbjct: 96 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 153
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG 208
FV FR+K +A +A+ EL + KGK IR S S+ N+LFIGNVP SWT+ +FRKV+E+VG
Sbjct: 154 FVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG 213
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
PGV +L+K A +RNRG+ FV YYN+ACA+Y+RQ+M+S FKLD N PTVSWA+PK
Sbjct: 214 PGVLKADLMKVSSA-NRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPK- 271
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD-FGFIHY 327
++ +A+ SQVK++YVKNLP+N T QLK LF+ HGE+ KVV PP + G + +GF+H+
Sbjct: 272 --NNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHF 329
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARP----QTNKRTEGVYSCAAGVHPSGLPHAGY 383
+RS A++A+++TE+YE+DGQVL+ +LA+P + + R S A + PS P GY
Sbjct: 330 KDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPS-YPPLGY 388
Query: 384 GSFAGT-AYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGV 442
G + AYG AA A QPM+Y + P G MVPM+LPDGR+ YV+QQPG
Sbjct: 389 GIMSVPGAYG--------AAPASTAQPMLYA-PRAPPGAAMVPMMLPDGRLVYVVQQPGG 439
Query: 443 QMPLPPPRPRR 453
Q+PL P P++
Sbjct: 440 QLPLASPPPQQ 450
>gi|222616602|gb|EEE52734.1| hypothetical protein OsJ_35153 [Oryza sativa Japonica Group]
Length = 558
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/371 (52%), Positives = 263/371 (70%), Gaps = 22/371 (5%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
EK KH +LLALPPHGSEV++GG+ D S EDL+ LCEP+GEV EV +++ KD +S+G+A
Sbjct: 96 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 153
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG 208
FV FR+K +A +A+ EL + KGK IR S S+ N+LFIGNVP SWT+ +FRKV+E+VG
Sbjct: 154 FVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG 213
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
PGV +L+K A +RNRG+ FV YYN+ACA+Y+RQ+M+S FKLD N PTVSWA+PK
Sbjct: 214 PGVLKADLMKVSSA-NRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPK- 271
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD-FGFIHY 327
++ +A+ SQVK++YVKNLP+N T QLK LF+ HGE+ KVV PP + G + +GF+H+
Sbjct: 272 --NNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHF 329
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARP----QTNKRTEGVYSCAAGVHPSGLPHAGY 383
+RS A++A+++TE+YE+DGQVL+ +LA+P + + R S A + PS P GY
Sbjct: 330 KDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPS-YPPLGY 388
Query: 384 GSFAGT-AYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGV 442
G + AYG AA A QPM+Y + P G MVPM+LPDGR+ YV+QQPG
Sbjct: 389 GIMSVPGAYG--------AAPASTAQPMLYA-PRAPPGAAMVPMMLPDGRLVYVVQQPGG 439
Query: 443 QMPLPPPRPRR 453
Q+PL P P++
Sbjct: 440 QLPLASPPPQQ 450
>gi|115487230|ref|NP_001066102.1| Os12g0136200 [Oryza sativa Japonica Group]
gi|113648609|dbj|BAF29121.1| Os12g0136200, partial [Oryza sativa Japonica Group]
Length = 515
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/370 (52%), Positives = 263/370 (71%), Gaps = 24/370 (6%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
EK KH +LLALPPHGSEV++GG+ D S EDL+ LCEP+GEV EV +++ KD +S+G+A
Sbjct: 109 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 166
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG 208
FV FR+K +A +A+ EL + KGK IR S S+ N+LFIGNVP SWT+ +FRKV+E+VG
Sbjct: 167 FVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG 226
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
PGV +L+K A +RNRG+ FV YYN+ACA+Y+RQ+M+S FKLD N PTVSWA+PK
Sbjct: 227 PGVLKADLMKVSSA-NRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPK- 284
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD-FGFIHY 327
++ +A+ SQVK++YVKNLP+N T QLK LF+ HGE+ KVV PP + G + +GF+H+
Sbjct: 285 --NNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHF 342
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARP----QTNKRTEGVYSCAAGVHPSGLPHAGY 383
+RS A++A+++TE+YE+DGQVL+ +LA+P + + R S A + PS P GY
Sbjct: 343 KDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPS-YPPLGY 401
Query: 384 GSFAGT-AYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGV 442
G + AYG AA A QPM+Y + P G MVPM+LPDGR+ YV+QQPG
Sbjct: 402 GIMSVPGAYG--------AAPASTAQPMLYA-PRAPPGAAMVPMMLPDGRLVYVVQQPGG 452
Query: 443 QMPL--PPPR 450
Q+PL PPP+
Sbjct: 453 QLPLASPPPQ 462
>gi|29371361|gb|AAO72701.1| putative RNA-binding protein [Oryza sativa Japonica Group]
Length = 476
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/371 (52%), Positives = 263/371 (70%), Gaps = 22/371 (5%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
EK KH +LLALPPHGSEV++GG+ D S EDL+ LCEP+GEV EV +++ KD +S+G+A
Sbjct: 108 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 165
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG 208
FV FR+K +A +A+ EL + KGK IR S S+ N+LFIGNVP SWT+ +FRKV+E+VG
Sbjct: 166 FVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG 225
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
PGV +L+K A +RNRG+ FV YYN+ACA+Y+RQ+M+S FKLD N PTVSWA+PK
Sbjct: 226 PGVLKADLMKVSSA-NRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPK- 283
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD-FGFIHY 327
++ +A+ SQVK++YVKNLP+N T QLK LF+ HGE+ KVV PP + G + +GF+H+
Sbjct: 284 --NNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHF 341
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARP----QTNKRTEGVYSCAAGVHPSGLPHAGY 383
+RS A++A+++TE+YE+DGQVL+ +LA+P + + R S A + PS P GY
Sbjct: 342 KDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPS-YPPLGY 400
Query: 384 GSFAGT-AYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGV 442
G + AYG AA A QPM+Y + P G MVPM+LPDGR+ YV+QQPG
Sbjct: 401 GIMSVPGAYG--------AAPASTAQPMLYA-PRAPPGAAMVPMMLPDGRLVYVVQQPGG 451
Query: 443 QMPLPPPRPRR 453
Q+PL P P++
Sbjct: 452 QLPLASPPPQQ 462
>gi|357153147|ref|XP_003576354.1| PREDICTED: polyadenylate-binding protein 3-like [Brachypodium
distachyon]
Length = 582
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/372 (51%), Positives = 262/372 (70%), Gaps = 21/372 (5%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K+KH +LL LPPHGSEV++GG+ DA+ EDL++LCEP+GEV EV ++ K ESKG+A
Sbjct: 167 DKDKHAELLGLPPHGSEVYLGGISNDATSEDLKELCEPVGEVVEVRIMPGKR--ESKGYA 224
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG 208
F+ F++K++A +AI++L +K FKGK IR S S+ N+LF+GNVP SW+ + +K +E+VG
Sbjct: 225 FITFKTKDLALKAIEKLSNKTFKGKKIRVSSSQAKNKLFVGNVPNSWSHDDLKKAVEEVG 284
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
PGV I+LIKDP+ RNRG+ FV YYNNACA+YSRQKM++ NFKLD N PTVSWA+PK+
Sbjct: 285 PGVLKIDLIKDPRT-DRNRGYGFVEYYNNACAEYSRQKMSTPNFKLDTNAPTVSWADPKN 343
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD-FGFIHY 327
+A+ SQVK++YVKNLP+N T QLK+LF+ HGE+TK+V PP K G + +GF+H+
Sbjct: 344 G---DSASTSQVKSVYVKNLPKNVTQGQLKKLFEHHGEITKIVLPPSKDGHDNRYGFVHF 400
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSG---LPHAGYG 384
+R A+KA+K+TEKYE+DGQ+L+ +LA+P +K+ + V ++ + L HA G
Sbjct: 401 KDRHMAMKALKNTEKYELDGQLLDCSLAKPPADKKDDTVSVSSSHKSSAKGGPLLHAPLG 460
Query: 385 SFAGTAYGSVST--GLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGV 442
YG + G G QPM+Y G P G MVPM+LPDGR+ YV+QQP
Sbjct: 461 ------YGIMPRPDAYGAPPSYGAAQPMLYAPG-APPGAAMVPMLLPDGRLVYVVQQPAP 513
Query: 443 QMPL--PPPRPR 452
Q PPP+ R
Sbjct: 514 QQHFASPPPQAR 525
>gi|108863978|gb|ABA91387.2| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 501
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 191/370 (51%), Positives = 260/370 (70%), Gaps = 24/370 (6%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
EK KH +LLALPPHGSEV++GG+ D S EDL+ LCEP+GEV EV +++ KD +S+G+A
Sbjct: 95 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 152
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG 208
FV FR+K +A + + EL + KGK IR S S+ N+LFIGNVP SWT+ +FRK +E+VG
Sbjct: 153 FVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKAVEEVG 212
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
PGV +L+K A +RNRG+ FV YYN+ACA+Y+RQ+M+S FKLD N PTVSWA+PK
Sbjct: 213 PGVLKADLMKVSSA-NRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPK- 270
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD-FGFIHY 327
++ + + SQVK++YVKNLP+N T QLK LF+ HGE+ KVV PP + G + +GF+H+
Sbjct: 271 --NNDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHF 328
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARP----QTNKRTEGVYSCAAGVHPSGLPHAGY 383
+RS A++A+++TE+YE+DGQVL+ +LA+P + + R S A + PS P GY
Sbjct: 329 KDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPS-YPPLGY 387
Query: 384 GSFAGT-AYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGV 442
G + AYG AA A QPM+Y + P G MVPM+LPDGR+ YV+QQPG
Sbjct: 388 GIMSVPGAYG--------AAPASTAQPMLYA-PRAPPGAAMVPMMLPDGRLVYVVQQPGG 438
Query: 443 QMPL--PPPR 450
Q+PL PPP+
Sbjct: 439 QLPLASPPPQ 448
>gi|222615491|gb|EEE51623.1| hypothetical protein OsJ_32902 [Oryza sativa Japonica Group]
Length = 1042
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 190/371 (51%), Positives = 260/371 (70%), Gaps = 22/371 (5%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
EK KH +LLALPPHGSEV++GG+ D S EDL+ LCEP+GEV EV +++ KD +S+G+A
Sbjct: 474 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 531
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG 208
FV FR+K +A + + EL + KGK IR S S+ N+LFIGNVP SWT+ +FRK +E+VG
Sbjct: 532 FVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKAVEEVG 591
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
PGV +L+K A +RNRG+ FV YYN+ACA+Y+RQ+M+S FKLD N PTVSWA+PK
Sbjct: 592 PGVLKADLMKVSSA-NRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPK- 649
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD-FGFIHY 327
++ + + SQVK++YVKNLP+N T QLK LF+ HGE+ KVV PP + G + +GF+H+
Sbjct: 650 --NNDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHF 707
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARP----QTNKRTEGVYSCAAGVHPSGLPHAGY 383
+RS A++A+++TE+YE+DGQVL+ +LA+P + + R S A + PS P GY
Sbjct: 708 KDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPS-YPPLGY 766
Query: 384 GSFAGT-AYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGV 442
G + AYG AA A QPM+Y + P G MVPM+LPDGR+ YV+QQPG
Sbjct: 767 GIMSVPGAYG--------AAPASTAQPMLYA-PRAPPGAAMVPMMLPDGRLVYVVQQPGG 817
Query: 443 QMPLPPPRPRR 453
Q+PL P P++
Sbjct: 818 QLPLASPPPQQ 828
>gi|125533325|gb|EAY79873.1| hypothetical protein OsI_35035 [Oryza sativa Indica Group]
Length = 1181
Score = 365 bits (936), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 190/371 (51%), Positives = 260/371 (70%), Gaps = 22/371 (5%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
EK KH +LLALPPHGSEV++GG+ D S EDL+ LCEP+GEV EV +++ KD +S+G+A
Sbjct: 505 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 562
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG 208
FV FR+K +A + + EL + KGK IR S S+ N+LFIGNVP SWT+ +FRK +E+VG
Sbjct: 563 FVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKAVEEVG 622
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
PGV +L+K A +RNRG+ FV YYN+ACA+Y+RQ+M+S FKLD N PTVSWA+PK
Sbjct: 623 PGVLKADLMKVSSA-NRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPK- 680
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD-FGFIHY 327
++ +A+ SQVK++YVKNLP+N T QLK LF+ HGE+ KVV PP + G + +GF+H+
Sbjct: 681 --NNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHF 738
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARP----QTNKRTEGVYSCAAGVHPSGLPHAGY 383
+RS A++A+++TE+YE+DGQVL+ +LA+P + + R S A + PS P GY
Sbjct: 739 KDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPS-YPPLGY 797
Query: 384 GSFAGT-AYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGV 442
G + AYG AA A QPM+Y + P G MVPM+LPDG + YV+QQPG
Sbjct: 798 GIMSVPGAYG--------AAPASTAQPMLYA-PRAPPGAAMVPMMLPDGHLVYVVQQPGG 848
Query: 443 QMPLPPPRPRR 453
Q+PL P P++
Sbjct: 849 QLPLASPPPQQ 859
>gi|242067347|ref|XP_002448950.1| hypothetical protein SORBIDRAFT_05g002300 [Sorghum bicolor]
gi|241934793|gb|EES07938.1| hypothetical protein SORBIDRAFT_05g002300 [Sorghum bicolor]
Length = 498
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 190/384 (49%), Positives = 264/384 (68%), Gaps = 29/384 (7%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
E+EKEKH +LLALPPHG+EV++GGL D S EDL+ L E +GEV EV + + G++K
Sbjct: 87 ENEKEKHAELLALPPHGAEVYVGGLSSDVSSEDLKRLFESVGEVVEVRM---RGKGDNKA 143
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIED 206
+AF+ FR+KE+A +AI +LC+KD KGK I+ S S+ NRLFIGNVP+ WT +F+ +E+
Sbjct: 144 YAFINFRTKEMALKAIRKLCNKDLKGKKIKVSSSQAKNRLFIGNVPRDWTPDDFKTAVEE 203
Query: 207 VGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEP 266
VGPGV ++L+K P + RN+G+ F+ YYN ACA+Y++QKM++ FKLD N PTVSWA+P
Sbjct: 204 VGPGVLQVDLMKAPGS-GRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADP 262
Query: 267 KSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD-FGFI 325
K+ + A + +QVK+LYVKN+P+ T +QLK+LF+ GE+TKVV PP KSG + +GF+
Sbjct: 263 KNA--NEATSTAQVKSLYVKNIPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENRYGFV 320
Query: 326 HYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAG---VHPSGLPHAG 382
H+ ERS A+KA+K+TE+YE+DGQ+L+ +LA+P +K+ + V + A + PS P G
Sbjct: 321 HFKERSMAMKALKNTERYELDGQLLDCSLAKPPADKKDDTVSAPTAKGAPLLPSYAP-LG 379
Query: 383 YG----------SFAGTAYGSVSTGLGVAAG---AGLQQPMIYGRGQMPAGMHMVPMVLP 429
YG AG AY + +GL A G A QPM+Y G P G M+PMVLP
Sbjct: 380 YGLVGAYNPLGNGLAG-AYNPLGSGLAGAYGVLSARAAQPMLYAPGA-PPGSTMIPMVLP 437
Query: 430 DGRIGYVLQQPG---VQMPLPPPR 450
DGR+ YV Q G V + PPP+
Sbjct: 438 DGRLVYVPQTAGQQPVHVTSPPPQ 461
>gi|78707789|gb|ABB46764.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|78707790|gb|ABB46765.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215694736|dbj|BAG89927.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 438
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 175/299 (58%), Positives = 234/299 (78%), Gaps = 2/299 (0%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
E+EK K D+LLALPP GSEVFIGGLP+D +E+DL +LCE GE+ EV L+KDK++ E+KG
Sbjct: 92 EEEKRKWDELLALPPQGSEVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKG 151
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIED 206
FAFV F K+ A+RAI++L K+ KG+T+RCS+S+ +RLF+GNVPK +E E R +I+
Sbjct: 152 FAFVTFTGKDGAQRAIEDLHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLSEDELRNIIQG 211
Query: 207 VGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEP 266
GPGV IE+ KD PSRNRGF FV YYN+ACADY++QK+++ NFK+DG+ TVSWAEP
Sbjct: 212 KGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQLTVSWAEP 271
Query: 267 K-STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGF 324
K S+ S++AA+QVK +YVKNLPEN + +++KE+F+ HGEVTKVV PP K+G KRDFGF
Sbjct: 272 KGSSSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKAGNKRDFGF 331
Query: 325 IHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGY 383
+H+AERSSALKA+K +EKYEIDGQVLEV++A+P +K+ + + + P+ GY
Sbjct: 332 VHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLGDKKPDHSFKPGGAPNFPLPPYGGY 390
>gi|346703160|emb|CBX25259.1| hypothetical_protein [Oryza brachyantha]
Length = 455
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 180/353 (50%), Positives = 252/353 (71%), Gaps = 23/353 (6%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
EKE + +LLALPPHGSEV++GG+ D S +DL+ LCEP+GEV EV ++K KD +S+G+A
Sbjct: 76 EKENYAELLALPPHGSEVYVGGISSDISSQDLKKLCEPVGEVVEVRMMKGKD--DSRGYA 133
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG 208
FV FR+K++A A+ EL + KGK IR S S+ N+LFIGNVP SWT+ +FRK +E+VG
Sbjct: 134 FVTFRTKDLALEAVRELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTQDDFRKAVEEVG 193
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
PGV +L+K + +RNRG+ FV YYN+ACA+Y+RQKM++ FKLD N PTVSWA+PK
Sbjct: 194 PGVLKADLMKV-SSTNRNRGYGFVEYYNHACAEYARQKMSTPTFKLDTNAPTVSWADPK- 251
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD-FGFIHY 327
++ +A+ SQVK++YVKNLP+N T +LK+LF+ HG++TKVV PP + G + +GF+H+
Sbjct: 252 --NNDSASTSQVKSVYVKNLPKNVTQAELKKLFEHHGDITKVVLPPSRGGHDNRYGFVHF 309
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARP-QTNKRTEGV---YSCAAGVHPSGLPHAGY 383
+RS A++A+++TE+YE+ GQVL+ +LA+P T+K+ E V S A + PS P GY
Sbjct: 310 KDRSMAMRALQNTERYELAGQVLDCSLAKPAATDKKDERVSLPSSNGAPLLPS-YPPLGY 368
Query: 384 GSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYV 436
G SV + GVA +PM+Y + P G MVPM+LPDGR+ YV
Sbjct: 369 GIM------SVPSAYGVAPA----RPMLYA-PRAPPGPAMVPMMLPDGRLVYV 410
>gi|414588669|tpg|DAA39240.1| TPA: heterogeneous nuclear ribonucleoprotein R [Zea mays]
Length = 506
Score = 347 bits (890), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 189/402 (47%), Positives = 259/402 (64%), Gaps = 38/402 (9%)
Query: 70 NTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGE 129
N E + D D + E+EKEKH +LLALPPHG+EV++GG+ D S EDL+ L E +GE
Sbjct: 74 NDESKMVDADGKV----ENEKEKHAELLALPPHGAEVYVGGISSDVSSEDLKQLFESVGE 129
Query: 130 VFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIG 189
V EV + + G+++ +AF+ FR+K +A +AI L +KD KGK I+ S S+ NRLFIG
Sbjct: 130 VVEVRM---RGKGDNRTYAFINFRTKAMALKAIQNLSNKDLKGKKIKVSPSQAKNRLFIG 186
Query: 190 NVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTS 249
NVP WT +F+ +E+VGPGV +EL+K P RN+G+ F+ YYN ACA+Y++QKM++
Sbjct: 187 NVPHDWTHDDFKTAVEEVGPGVLKVELMKAPGL-DRNKGYGFIEYYNQACAEYAKQKMST 245
Query: 250 ANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK 309
FKLD N PTVSWA+PK+ + A + +QVK+LYVKNLP+ T +QLK+LF+ GE+TK
Sbjct: 246 PEFKLDTNAPTVSWADPKNA--NEATSTAQVKSLYVKNLPKTVTQEQLKKLFEHVGEITK 303
Query: 310 VVTPPGKSGKRD-FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYS 368
VV PP KSG + +GF+H+ ER A+KA+K+TE+YE+DGQ+L+ +LA+P +K+ V +
Sbjct: 304 VVVPPAKSGHENRYGFVHFKERYMAMKALKNTERYELDGQLLDCSLAKPPADKKDSTVST 363
Query: 369 CAAG---VHPSGLPHAGYGSFAGTAYGSVSTGL----------GVAAGAGL-----QQPM 410
A + PS P GYG AY GL G+A G+ QPM
Sbjct: 364 PTAKGGPLLPSYAP-LGYGLVG--AYNPRGKGLADAYNNPLGNGLAGAYGVLSARAAQPM 420
Query: 411 IYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQ-----MPLP 447
+Y G P G M+PMVLPDGR+ YV Q G Q PLP
Sbjct: 421 VYAPG-APPGSTMIPMVLPDGRLVYVPQAAGQQPVHATSPLP 461
>gi|242084538|ref|XP_002442694.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
gi|241943387|gb|EES16532.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
Length = 491
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 195/407 (47%), Positives = 264/407 (64%), Gaps = 35/407 (8%)
Query: 73 DAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFE 132
DA D A EDEKE H +LL+LPPHGSEV++GG+ D S +DLR LCE IGEV E
Sbjct: 66 DAKHDSKMVDADRDEDEKESHAELLSLPPHGSEVYVGGISSDVSSDDLRKLCESIGEVVE 125
Query: 133 VGLVKDKDSGES-KGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNV 191
V + G+S K +AFV FR+KE+A +AI +L +KD KGK IR S S+ NRLFIGN+
Sbjct: 126 VRM-----PGKSGKLYAFVNFRTKELAVKAIQKLNNKDLKGKKIRVSSSQAKNRLFIGNI 180
Query: 192 PKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN 251
P WTE F++ +E+VGPGV + L+K P++ + N+G+ F+ YYN ACA+Y+++KM++
Sbjct: 181 PYKWTEDIFKEAVEEVGPGVVKVNLVKAPRSDT-NKGYGFIEYYNQACAEYAKKKMSTPE 239
Query: 252 FKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVV 311
FKLD N P VSWA+ K+ + +A+ SQVK+LY+KNLP+ T +QLK LF+ GEVTKVV
Sbjct: 240 FKLDKNAPNVSWADTKNGGE--SASTSQVKSLYIKNLPKTVTQEQLKRLFEHLGEVTKVV 297
Query: 312 TPPGKSGKRD-FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCA 370
PP K+G + +GF+H+ ERS A+KA+KDTE+YE+DG +L+ +LA+P K+ +
Sbjct: 298 IPPAKAGHENRYGFVHFKERSMAMKALKDTERYELDGHLLDCSLAKPLAEKKDDTTSVPK 357
Query: 371 AG-VHPSGLPHAGYGSFAGTAYGSVSTGL---------GVAA-----GAGLQQPMIYGRG 415
G + PS P GYG AY + GL GVA GA QPM+Y G
Sbjct: 358 GGPLLPSYTP-LGYGLMG--AYNPLGNGLAGAYNPHGNGVAGAYGVLGAQAAQPMLYVPG 414
Query: 416 QMPAGMHMVPMVLPDGRIGYVLQQPGVQ-MPLPPPRPRRVERGPGGR 461
P G M+PMVLPDGR+ Y+ Q G Q +P+ P P++ GGR
Sbjct: 415 A-PLGSTMIPMVLPDGRLVYLPQPAGQQTVPMTSPPPQK-----GGR 455
>gi|226532808|ref|NP_001151969.1| LOC100285606 [Zea mays]
gi|195651435|gb|ACG45185.1| heterogeneous nuclear ribonucleoprotein R [Zea mays]
Length = 469
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 186/393 (47%), Positives = 256/393 (65%), Gaps = 33/393 (8%)
Query: 70 NTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGE 129
N E + D D + E+EKEKH +LLALPPHG+EV++GG+ D S EDL+ L E +GE
Sbjct: 73 NDESKMVDADGKV----ENEKEKHAELLALPPHGAEVYVGGISSDVSSEDLKQLFESVGE 128
Query: 130 VFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIG 189
V EV + + G+++ +AF+ FR+K +A +AI L +KD KGK I+ S S+ NRLFIG
Sbjct: 129 VVEVRM---RGKGDNRTYAFINFRTKAMALKAIQNLSNKDLKGKKIKVSPSQAKNRLFIG 185
Query: 190 NVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTS 249
NVP WT +F+ +E+VGPGV +EL+K P RN+G+ F+ YYN ACA+Y++QKM++
Sbjct: 186 NVPHDWTHDDFKTAVEEVGPGVLKVELMKAPGL-DRNKGYGFIEYYNQACAEYAKQKMST 244
Query: 250 ANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK 309
FKLD N PTVSWA+PK+ + A + +QVK+LYVKNLP+ T +QLK+LF+ GE+TK
Sbjct: 245 PEFKLDTNAPTVSWADPKNA--NEATSTAQVKSLYVKNLPKTVTQEQLKKLFEHVGEITK 302
Query: 310 VVTPPGKSGKRD-FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYS 368
VV PP KSG + +GF+H+ ER A+KA+K+TE+YE+DGQ+L+ +LA+P +K+ V +
Sbjct: 303 VVVPPAKSGHENRYGFVHFKERYMAMKALKNTERYELDGQLLDCSLAKPPADKKDSTVST 362
Query: 369 CAAG---VHPSGLPHAGYGSFAGTAYGSVSTGL----------GVAAGAGL-----QQPM 410
A + PS P GYG AY GL G+A G+ QPM
Sbjct: 363 PTAKGGPLLPSYAP-LGYGLVG--AYNPRGKGLADAYNNPLGNGLAGAYGVLSARAAQPM 419
Query: 411 IYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQ 443
+Y G P G M+PMVLPDGR+ YV Q G Q
Sbjct: 420 VYAPGA-PPGSTMIPMVLPDGRLVYVPQAAGQQ 451
>gi|238006198|gb|ACR34134.1| unknown [Zea mays]
gi|413924828|gb|AFW64760.1| hypothetical protein ZEAMMB73_682858 [Zea mays]
Length = 499
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 191/394 (48%), Positives = 261/394 (66%), Gaps = 31/394 (7%)
Query: 70 NTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGE 129
N + + D+D + +EKEKH +LLALPPHG+EV++GGL D S EDL+ L E +GE
Sbjct: 73 NHDSKIVDDDPKDG----NEKEKHAELLALPPHGAEVYVGGLSSDVSSEDLKQLFESVGE 128
Query: 130 VFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIG 189
V EV + + G++K +AF+ FR+KE+A +AI +L +KD KGK I+ S S+ NRLFIG
Sbjct: 129 VAEVRM---RGKGDNKTYAFINFRTKEMALKAIQKLSNKDLKGKKIKVSSSQAKNRLFIG 185
Query: 190 NVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTS 249
NVP WT +F+ +E+VGPGV ++L+K P + RN+G+ F+ YYN ACA+Y++QKM++
Sbjct: 186 NVPHDWTPDDFKTAVEEVGPGVLKVDLMKAPGS-GRNKGYGFIEYYNQACAEYAKQKMST 244
Query: 250 ANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK 309
FKLD N PTVSWA+ K+ + A + SQVK+LYVKNLP+ T +QLK+LF+ GE+TK
Sbjct: 245 PEFKLDTNAPTVSWADHKNASE--ATSTSQVKSLYVKNLPKTVTQEQLKKLFEHVGEITK 302
Query: 310 VVTPPGKSGKRD-FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE-GVY 367
VV PP KSG + +GF+H+ ERS +KA+K+TE+YE+DGQ+L+ + A+P +K+ + G
Sbjct: 303 VVIPPAKSGHENRYGFVHFKERSMVMKALKNTERYELDGQLLDCSPAKPPADKKDDTGSS 362
Query: 368 SCAAG--VHPSGLPHAGYGSFAGT----------AYGSVSTGLGVAAG---AGLQQPMIY 412
A G + PS P GYG AG AY S GL A G A QPM+Y
Sbjct: 363 PTAKGRPLPPSYAP-LGYG-LAGAYNPLGKGLAGAYNSPGNGLAGAYGVLSAHAAQPMLY 420
Query: 413 GRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMPL 446
G P G M+PMVLPDGR+ YV Q G Q PL
Sbjct: 421 APGASP-GSTMIPMVLPDGRLVYVPQTAG-QQPL 452
>gi|124359745|gb|ABD32695.2| RNA-binding region RNP-1 (RNA recognition motif); Calcium-binding
EF-hand [Medicago truncatula]
Length = 559
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 167/282 (59%), Positives = 231/282 (81%), Gaps = 10/282 (3%)
Query: 1 MADNTEVEERVDLDEDDYMEEIDDDPEEQLDDDGEV-----GRDGNVKQNDEDEEYDAET 55
M++ E+++RVDLDE++YMEE+DDD EEQ+DDDG +G+V+++ E EE AE
Sbjct: 1 MSEGAEIDDRVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEH-EYEETAAEA 59
Query: 56 SKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDA 115
++DQ P S + E+++ + A I E+E+EKHD+LL+ PPHGSEVFIGGLP+D
Sbjct: 60 GQKDQFPEGEKS----DHGAEEDELKPALIDEEEREKHDELLSRPPHGSEVFIGGLPRDT 115
Query: 116 SEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
S++D+R+LCEP+G++ E+ L+KD+++GESKG+AFV +++KEVA++AID++ +K+FKGKT+
Sbjct: 116 SDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTL 175
Query: 176 RCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYY 235
RC +SET +RLFIGN+PK+WTE EFRK +E VGPGV++I+LIKDPQ SRNRGFAFVLYY
Sbjct: 176 RCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYY 235
Query: 236 NNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
NNACAD+SRQKM+S FKLDG TPTV+WA+PK++PD SAAA+
Sbjct: 236 NNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPDQSAAAS 277
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 166/357 (46%), Positives = 218/357 (61%), Gaps = 20/357 (5%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFE-VGLVKD-KDSGESKGFAFVAFRSKEVAKRAID 163
+FIG +PK +E++ R E +G E + L+KD ++ ++GFAFV + + A +
Sbjct: 186 LFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQ 245
Query: 164 ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKE------FRKVIEDVGPGVDTIELI 217
++ S FK I +++ + PK+ ++ +R ++ V +
Sbjct: 246 KMSSVGFKLDGITPTVTWAD--------PKTSPDQSAAASQFYRTAVQPVLLYGTECWAV 297
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
K + +L + + + R + + ++ G P V
Sbjct: 298 KSQHENQVSVAEMRMLRWMSGKTRHDRIRNDTIRERV-GVAPIVEKLVENRLRWFGHVER 356
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGK-SGKRDFGFIHYAERSSALKA 336
VKALYVKN+PEN TT+QLKELF+RHGEVTKVV PPGK SGKRDFGFIHYAERSSALKA
Sbjct: 357 RPVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSSALKA 416
Query: 337 IKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYGSVST 396
+K+TEKYEIDGQ LEV +A+PQ K+ +G Y+ G+HP+ LPH GYG+F+G YGSV
Sbjct: 417 VKETEKYEIDGQALEVVIAKPQAEKKPDGGYAYNPGLHPNHLPHPGYGNFSGNLYGSVGA 476
Query: 397 GLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPRR 453
G GVAA A QQPMIYGRG MPAGM MVPMVLPDGRIGYVLQQPGVQ +P PRPRR
Sbjct: 477 GYGVAAAAAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQ--VPGPRPRR 531
>gi|413924827|gb|AFW64759.1| hypothetical protein ZEAMMB73_682858 [Zea mays]
Length = 509
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 191/394 (48%), Positives = 261/394 (66%), Gaps = 31/394 (7%)
Query: 70 NTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGE 129
N + + D+D + +EKEKH +LLALPPHG+EV++GGL D S EDL+ L E +GE
Sbjct: 83 NHDSKIVDDDPKDG----NEKEKHAELLALPPHGAEVYVGGLSSDVSSEDLKQLFESVGE 138
Query: 130 VFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIG 189
V EV + + G++K +AF+ FR+KE+A +AI +L +KD KGK I+ S S+ NRLFIG
Sbjct: 139 VAEVRM---RGKGDNKTYAFINFRTKEMALKAIQKLSNKDLKGKKIKVSSSQAKNRLFIG 195
Query: 190 NVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTS 249
NVP WT +F+ +E+VGPGV ++L+K P + RN+G+ F+ YYN ACA+Y++QKM++
Sbjct: 196 NVPHDWTPDDFKTAVEEVGPGVLKVDLMKAPGS-GRNKGYGFIEYYNQACAEYAKQKMST 254
Query: 250 ANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK 309
FKLD N PTVSWA+ K+ + A + SQVK+LYVKNLP+ T +QLK+LF+ GE+TK
Sbjct: 255 PEFKLDTNAPTVSWADHKNASE--ATSTSQVKSLYVKNLPKTVTQEQLKKLFEHVGEITK 312
Query: 310 VVTPPGKSGKRD-FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE-GVY 367
VV PP KSG + +GF+H+ ERS +KA+K+TE+YE+DGQ+L+ + A+P +K+ + G
Sbjct: 313 VVIPPAKSGHENRYGFVHFKERSMVMKALKNTERYELDGQLLDCSPAKPPADKKDDTGSS 372
Query: 368 SCAAG--VHPSGLPHAGYGSFAGT----------AYGSVSTGLGVAAG---AGLQQPMIY 412
A G + PS P GYG AG AY S GL A G A QPM+Y
Sbjct: 373 PTAKGRPLPPSYAP-LGYG-LAGAYNPLGKGLAGAYNSPGNGLAGAYGVLSAHAAQPMLY 430
Query: 413 GRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMPL 446
G P G M+PMVLPDGR+ YV Q G Q PL
Sbjct: 431 APGASP-GSTMIPMVLPDGRLVYVPQTAG-QQPL 462
>gi|414588668|tpg|DAA39239.1| TPA: hypothetical protein ZEAMMB73_667091 [Zea mays]
Length = 445
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 183/386 (47%), Positives = 253/386 (65%), Gaps = 33/386 (8%)
Query: 70 NTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGE 129
N E + D D + E+EKEKH +LLALPPHG+EV++GG+ D S EDL+ L E +GE
Sbjct: 74 NDESKMVDADGKV----ENEKEKHAELLALPPHGAEVYVGGISSDVSSEDLKQLFESVGE 129
Query: 130 VFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIG 189
V EV + + G+++ +AF+ FR+K +A +AI L +KD KGK I+ S S+ NRLFIG
Sbjct: 130 VVEVRM---RGKGDNRTYAFINFRTKAMALKAIQNLSNKDLKGKKIKVSPSQAKNRLFIG 186
Query: 190 NVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTS 249
NVP WT +F+ +E+VGPGV +EL+K P RN+G+ F+ YYN ACA+Y++QKM++
Sbjct: 187 NVPHDWTHDDFKTAVEEVGPGVLKVELMKAPGL-DRNKGYGFIEYYNQACAEYAKQKMST 245
Query: 250 ANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK 309
FKLD N PTVSWA+PK+ + A + +QVK+LYVKNLP+ T +QLK+LF+ GE+TK
Sbjct: 246 PEFKLDTNAPTVSWADPKNA--NEATSTAQVKSLYVKNLPKTVTQEQLKKLFEHVGEITK 303
Query: 310 VVTPPGKSGKRD-FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYS 368
VV PP KSG + +GF+H+ ER A+KA+K+TE+YE+DGQ+L+ +LA+P +K+ V +
Sbjct: 304 VVVPPAKSGHENRYGFVHFKERYMAMKALKNTERYELDGQLLDCSLAKPPADKKDSTVST 363
Query: 369 CAAG---VHPSGLPHAGYGSFAGTAYGSVSTGL----------GVAAGAGL-----QQPM 410
A + PS P GYG AY GL G+A G+ QPM
Sbjct: 364 PTAKGGPLLPSYAP-LGYGLVG--AYNPRGKGLADAYNNPLGNGLAGAYGVLSARAAQPM 420
Query: 411 IYGRGQMPAGMHMVPMVLPDGRIGYV 436
+Y G P G M+PMVLPDGR+ YV
Sbjct: 421 VYAPGA-PPGSTMIPMVLPDGRLVYV 445
>gi|413915907|gb|AFW55839.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
gi|413915908|gb|AFW55840.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
Length = 492
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 184/389 (47%), Positives = 252/389 (64%), Gaps = 30/389 (7%)
Query: 73 DAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFE 132
DA D A E K HD+LLALPPHGSEV++GG+ D S +DL+ LCE +GEV E
Sbjct: 65 DAKHDSKMVDADTDEGGKGSHDELLALPPHGSEVYVGGIASDVSSDDLKKLCESVGEVVE 124
Query: 133 VGLVKDKDSGES-KGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNV 191
V + G+S + +AFV FR+KE+A +AI +L +KD KGK IR S S+ NRLFIGN+
Sbjct: 125 VRM-----PGKSGRLYAFVNFRTKELASKAIQKLNNKDLKGKKIRVSSSQAKNRLFIGNI 179
Query: 192 PKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN 251
P +WTE EF+K E+VGPGV + L+K P + + N+G+ F+ YYN ACA+Y+++ M++
Sbjct: 180 PYNWTENEFKKAAEEVGPGVLKVNLVKAPHSDT-NKGYGFIEYYNQACAEYAKKMMSTPE 238
Query: 252 FKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVV 311
FKLD N P VSWA+ K+ + +A+ +QVK+LYVKNLP+ T +QLK+LF+ GEVTKVV
Sbjct: 239 FKLDKNAPNVSWADTKNGGE--SASTAQVKSLYVKNLPKAVTQEQLKKLFEHLGEVTKVV 296
Query: 312 TPPGKSGKRD-FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCA 370
PP K+G + +GF+H+ ERS A+KA++DTE++E+DGQ+L+ +LA+P +K+ +
Sbjct: 297 IPPAKAGHENRYGFVHFKERSMAMKALEDTERFELDGQLLDCSLAKPLADKKDDTSAPKG 356
Query: 371 AGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAA----------------GAGLQQPMIYGR 414
+ PS P GYG AY + GL VA GA QPM+Y
Sbjct: 357 GPLLPSYTP-VGYGLMG--AYNPLGNGLAVAGAYNPYGNGLAGAYGVLGAHAAQPMLYVP 413
Query: 415 GQMPAGMHMVPMVLPDGRIGYVLQQPGVQ 443
G P G M+PMVLPDGR+ YV Q G Q
Sbjct: 414 G-APPGSTMIPMVLPDGRLVYVPQPAGQQ 441
>gi|116788096|gb|ABK24755.1| unknown [Picea sitchensis]
Length = 506
Score = 337 bits (864), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 184/410 (44%), Positives = 259/410 (63%), Gaps = 25/410 (6%)
Query: 39 DGNVKQNDEDEEYDAETSKEDQSPGA--NGSHINTEDAVEDEDKRTASISEDEKEKHDQL 96
+G+ Q++++ E D D + +G+ EDA+ E + + E+ D+L
Sbjct: 62 EGSGSQDEQEAEQDVNVPNVDHEKLSEDDGNIDTVEDALPAEGNGEKADKDKEECNDDEL 121
Query: 97 LALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
LA PPHG+EVF+G LP++ ++EDL LCE GEVF+V + ++ E +AFV F +KE
Sbjct: 122 LARPPHGTEVFVGNLPRNITKEDLTSLCEQHGEVFDVIIKREASKLE---YAFVTFTTKE 178
Query: 157 VAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK+AI+ L +FK K +R S S+ NRLF+GN+P + E+E K++ + GPG +EL
Sbjct: 179 SAKKAIETLNGFEFKDKKLRVSESQPKNRLFLGNIPSNLKEEELTKIVSEQGPGYQHLEL 238
Query: 217 IKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
IKDP+ +RNRGFAFV YYN CA+ + + MT + F+LD TV WA + + +
Sbjct: 239 IKDPKDTTRNRGFAFVEYYNKGCAEKAMKNMTHSKFQLDDKLITVKWATSQRS------S 292
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG--KRDFGFIHYAERSSAL 334
+ +VK++YV+NLPEN T +QL+ELF RHGEVTKVV K G KRDFGF+HYA+ SSA+
Sbjct: 293 SEEVKSVYVRNLPENVTEEQLRELFGRHGEVTKVVLLEQKPGQPKRDFGFVHYADHSSAM 352
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHP---SGLPHAGYGSFAGTAY 391
KAI+ TEKY ++ + L V+LARP ++K+ + + + + P + P AGYG Y
Sbjct: 353 KAIEKTEKYTLEDRELSVSLARPLSDKKPQNMGNPTSFQRPLFSNFQPQAGYG------Y 406
Query: 392 GSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPG 441
G G G QP+IYGRG P GM MVPM+LPDGR+GYVLQQPG
Sbjct: 407 NPNMYGFG---SMGYTQPVIYGRGPTPEGMTMVPMILPDGRVGYVLQQPG 453
>gi|346703354|emb|CBX25451.1| hypothetical_protein [Oryza glaberrima]
Length = 558
Score = 331 bits (848), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 187/371 (50%), Positives = 257/371 (69%), Gaps = 23/371 (6%)
Query: 90 KEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVG-LVKDKDSGESKGFA 148
K KH +LLALPPHGSEV++GG+ D S EDL+ LCEP+GEV EV +++ KD +S+G+A
Sbjct: 152 KGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVVRMMRGKD--DSRGYA 209
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG 208
FV FR+K +A + + EL + K IR S S+ N+LFIGNVP SWT+ +FRK +E+VG
Sbjct: 210 FVNFRTKGLALKVVKELNNAKLK-VWIRVSSSQAKNKLFIGNVPHSWTDDDFRKAVEEVG 268
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
PGV +L+K A +RNRG+ FV YYN+ACA+Y+RQ+M+S FKLD N PTVSWA+PK+
Sbjct: 269 PGVLKADLMKVSSA-NRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 327
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD-FGFIHY 327
+ SA+ + VK++YVKNLP+N T QLK LF+ HGE+ KVV PP + G + +GF+H+
Sbjct: 328 --NDSASTSQVVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHF 385
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARP----QTNKRTEGVYSCAAGVHPSGLPHAGY 383
+RS A++A+++TE+YE+DGQVL+ +LA+P + + R S A + PS P GY
Sbjct: 386 KDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPS-YPPLGY 444
Query: 384 GSFAGT-AYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGV 442
G + AYG AA A QPM+Y + P G MVPM+LPDGR+ YV+QQPG
Sbjct: 445 GIMSVPGAYG--------AAPASTAQPMLYA-PRAPPGAAMVPMMLPDGRLVYVVQQPGG 495
Query: 443 QMPLPPPRPRR 453
Q+PL P P++
Sbjct: 496 QLPLASPPPQQ 506
>gi|388509780|gb|AFK42956.1| unknown [Lotus japonicus]
Length = 232
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 154/211 (72%), Positives = 176/211 (83%), Gaps = 8/211 (3%)
Query: 247 MTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGE 306
M+S++FKL GNTPTV+WA+PK++PDHSA+ SQVKALYVKN+PEN TT QLKELF+RHGE
Sbjct: 1 MSSSSFKLYGNTPTVTWADPKNSPDHSAS--SQVKALYVKNIPENVTTDQLKELFRRHGE 58
Query: 307 VTKVVTPPGK-SGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEG 365
VTKVV PPGK GKRDFGFIH+AERSSALKA+K+TEKYEIDGQVLEV LA+PQ KR +
Sbjct: 59 VTKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPDA 118
Query: 366 VYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVP 425
Y+ GVHP+ LPHAGYGS++G YGS+ TG G A QQPM+YGRG MPAGM MVP
Sbjct: 119 -YAFNPGVHPNHLPHAGYGSYSGNPYGSLGTGYG--AAPAYQQPMMYGRGPMPAGMQMVP 175
Query: 426 MVLPDGRIGYVLQQPGVQMPLPPPRPRRVER 456
MVLPDGRIGYVLQQPGVQ+P RPRR ER
Sbjct: 176 MVLPDGRIGYVLQQPGVQVPA--ARPRRNER 204
>gi|108863977|gb|ABG22355.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 361
Score = 300 bits (769), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 160/324 (49%), Positives = 223/324 (68%), Gaps = 24/324 (7%)
Query: 135 LVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKS 194
+++ KD +S+G+AFV FR+K +A + + EL + KGK IR S S+ N+LFIGNVP S
Sbjct: 1 MMRGKD--DSRGYAFVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHS 58
Query: 195 WTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKL 254
WT+ +FRK +E+VGPGV +L+K A +RNRG+ FV YYN+ACA+Y+RQ+M+S FKL
Sbjct: 59 WTDDDFRKAVEEVGPGVLKADLMKVSSA-NRNRGYGFVEYYNHACAEYARQEMSSPTFKL 117
Query: 255 DGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPP 314
D N PTVSWA+PK ++ + + SQVK++YVKNLP+N T QLK LF+ HGE+ KVV PP
Sbjct: 118 DSNAPTVSWADPK---NNDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPP 174
Query: 315 GKSGKRD-FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP----QTNKRTEGVYSC 369
+ G + +GF+H+ +RS A++A+++TE+YE+DGQVL+ +LA+P + + R S
Sbjct: 175 SRGGHDNRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSN 234
Query: 370 AAGVHPSGLPHAGYGSFAGT-AYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVL 428
A + PS P GYG + AYG AA A QPM+Y + P G MVPM+L
Sbjct: 235 GAPLLPS-YPPLGYGIMSVPGAYG--------AAPASTAQPMLYA-PRAPPGAAMVPMML 284
Query: 429 PDGRIGYVLQQPGVQMPL--PPPR 450
PDGR+ YV+QQPG Q+PL PPP+
Sbjct: 285 PDGRLVYVVQQPGGQLPLASPPPQ 308
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 87/180 (48%), Gaps = 26/180 (14%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGE-VFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
+++FIG +P +++D R E +G V + L+K + ++G+ FV + + A+ A
Sbjct: 48 NKLFIGNVPHSWTDDDFRKAVEEVGPGVLKADLMKVSSANRNRGYGFVEYYNHACAEYAR 107
Query: 163 DELCSKDFK----GKTIRCSMSETNN--------RLFIGNVPKSWTEKEFRKVIEDVGPG 210
E+ S FK T+ + + N+ +++ N+PK+ T+ + +++ E G
Sbjct: 108 QEMSSPTFKLDSNAPTVSWADPKNNDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHG-- 165
Query: 211 VDTIELIKDPQAPSR----NRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEP 266
IE + P PSR NR + FV + + + A R + ++LDG S A+P
Sbjct: 166 --EIEKVVLP--PSRGGHDNR-YGFVHFKDRSMA--MRALQNTERYELDGQVLDCSLAKP 218
>gi|384250281|gb|EIE23761.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 374
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 107/274 (39%), Positives = 175/274 (63%), Gaps = 12/274 (4%)
Query: 94 DQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGE-SKGFAFVAF 152
D ++ PPHG+EVF+GG+P+ A+E+ L+ E +GEV V L+KD + E ++GF FV F
Sbjct: 67 DDPMSEPPHGTEVFVGGIPRSATEDQLKVFAEAMGEVHAVVLLKDPQNNEQNRGFGFVKF 126
Query: 153 RSKEVAKRAIDELCSK---DFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
+++ A A+++L K DF G+ +R + S++ ++L++GN+P+ ++ + ++ V
Sbjct: 127 KTRAAATDALEKLAGKQLADFPGQNLRVAPSQSKHKLYVGNIPRDLSKDTLKAELDAVVK 186
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST 269
GV+ IEL+ + P NRGFAF+ +YN+ACA ++ +++ + + G + V++AEPK
Sbjct: 187 GVEVIELLMSKEYPGNNRGFAFIEFYNHACAQLAKNALSAPTYTMHGRSLNVAYAEPKGA 246
Query: 270 PDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHY 327
QVK++YV NLP + +LKELF++ GEVTKVV PP + K R+FGF+H+
Sbjct: 247 ---DQVPTQQVKSVYVGNLPASANEAKLKELFEQFGEVTKVVIPPSRPDKPNREFGFVHF 303
Query: 328 AERSSALKAIKDTE---KYEIDGQVLEVALARPQ 358
+ERS K ++D E K +D LEV +A+PQ
Sbjct: 304 SERSVVEKLVQDAEKGTKPSLDSNTLEVKMAKPQ 337
>gi|226506072|ref|NP_001146195.1| uncharacterized protein LOC100279765 [Zea mays]
gi|219886139|gb|ACL53444.1| unknown [Zea mays]
Length = 287
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 117/239 (48%), Positives = 155/239 (64%), Gaps = 23/239 (9%)
Query: 225 RNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALY 284
RN+G+ F+ YYN ACA+Y++QKM++ FKLD N PTVSWA+ K+ + A + SQVK+LY
Sbjct: 8 RNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADHKNASE--ATSTSQVKSLY 65
Query: 285 VKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD-FGFIHYAERSSALKAIKDTEKY 343
VKNLP+ T +QLK+LF+ GE+TKVV PP KSG + +GF+H+ ERS +KA+K+TE+Y
Sbjct: 66 VKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENRYGFVHFKERSMVMKALKNTERY 125
Query: 344 EIDGQVLEVALARPQTNKRTE-GVYSCAAG--VHPSGLPHAGYGSFAGT----------A 390
E+DGQ+L+ + A+P +K+ + G A G + PS P GYG AG A
Sbjct: 126 ELDGQLLDCSPAKPPADKKDDTGSSPTAKGRPLPPSYAP-LGYG-LAGAYNPLGKGLAGA 183
Query: 391 YGSVSTGLGVAAG---AGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMPL 446
Y S GL A G A QPM+Y G P G M+PMVLPDGR+ YV Q G Q PL
Sbjct: 184 YNSPGNGLAGAYGVLSAHAAQPMLYAPGASP-GSTMIPMVLPDGRLVYVPQTAG-QQPL 240
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+++ LPK ++E L+ L E +GE+ +V ++ SG + FV F+ + + +A+
Sbjct: 64 LYVKNLPKTVTQEQLKKLFEHVGEITKV-VIPPAKSGHENRYGFVHFKERSMVMKALKNT 122
Query: 166 CSKDFKGKTIRCS 178
+ G+ + CS
Sbjct: 123 ERYELDGQLLDCS 135
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 68/144 (47%), Gaps = 18/144 (12%)
Query: 136 VKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNR---------- 185
+K SG +KG+ F+ + ++ A+ A ++ + +FK T ++S +++
Sbjct: 1 MKAPGSGRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADHKNASEATSTSQ 60
Query: 186 ---LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADY 242
L++ N+PK+ T+++ +K+ E VG + +++ P + FV + +
Sbjct: 61 VKSLYVKNLPKTVTQEQLKKLFEHVG---EITKVVIPPAKSGHENRYGFVHFKERSMV-- 115
Query: 243 SRQKMTSANFKLDGNTPTVSWAEP 266
+ + ++LDG S A+P
Sbjct: 116 MKALKNTERYELDGQLLDCSPAKP 139
>gi|328876236|gb|EGG24599.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 497
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 163/259 (62%), Gaps = 8/259 (3%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+EVF+GG+ ++ +EE+L+DL IG V +V ++KD+ +GE+KG+ FV+F +K K A+
Sbjct: 112 NEVFVGGIARNTTEEELQDLFSTIGNVKQVRIMKDRSNGENKGYGFVSFANKSNCKEAVV 171
Query: 164 ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
+ +K+FKGK +R SE ++FIGN+PK + + ++ D G+ ++ + DP
Sbjct: 172 QFNNKEFKGKNLRVKFSENKRKIFIGNLPKELKKDQLLLILADHSDGITNVDFLTDPDNS 231
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKAL 283
SRNRGFAF+ Y + A+ +R++ + NFK+ TV+WA+P PD + +QV+ L
Sbjct: 232 SRNRGFAFIEYTDYYQAEKARKEFSQPNFKIGNCNVTVNWADPIQEPDET--IMNQVRVL 289
Query: 284 YVKNLPENTTTKQLKELFQRHGEVTKVVTP---PGKSGKRDFGFIHYAERSSALKAIKDT 340
Y++NLP++ + +Q+++LF+ +G + KV+ P PG+ +RDFGF+H+A R A +
Sbjct: 290 YIRNLPDSKSEEQVRKLFEEYGVIEKVIIPNNLPGQQ-RRDFGFVHFANRDEAEATLARH 348
Query: 341 EKYEI--DGQVLEVALARP 357
I G+ L ++ A+P
Sbjct: 349 HDTPITYQGRPLSLSFAKP 367
>gi|281200597|gb|EFA74815.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 425
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 94/268 (35%), Positives = 168/268 (62%), Gaps = 8/268 (2%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P +EVF+GG+ K+ +E+DL+ + +G V ++ L+K+K +GESKG+AF+ F K +
Sbjct: 43 PMAENEVFVGGVSKNVTEDDLQSVFNSVGSVRQIRLMKNKLNGESKGYAFITFEDKSSCQ 102
Query: 160 RAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKD 219
A++++ +K+ KGK++R SE +LF+GN+PK + +++ +++ G+ +++ + D
Sbjct: 103 MAVEKISNKELKGKSLRVKYSENRRKLFLGNLPKEFNKEQLLEILNKHTEGITSMDFLMD 162
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
P P+RNRGFAFV + + AD +R++ S +F++ + TV+WA+P PD
Sbjct: 163 PDNPTRNRGFAFVEFSDYYLADKARKEFASPSFRIGSSCVTVNWADPVQEPDED--VMKN 220
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTP---PGKSGKRDFGFIHYAERSSALKA 336
V+ LYV+NLPE ++ LK++F+ G + KV+ P PG+ +RDFGF+H+ R +A +A
Sbjct: 221 VRVLYVRNLPEQRNSEDLKKVFEEFGTIEKVIIPVNIPGQQ-RRDFGFVHFESREAAEEA 279
Query: 337 I--KDTEKYEIDGQVLEVALARPQTNKR 362
+ + + G+ L V+ A+P K+
Sbjct: 280 LVRHNNQPITYQGRDLIVSFAKPMDKKQ 307
>gi|440796577|gb|ELR17686.1| RNA recognition motif (RRM)containing protein [Acanthamoeba
castellanii str. Neff]
Length = 868
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 158/270 (58%), Gaps = 14/270 (5%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVG---------LVKDKDSGESKGFAFV 150
PP GSEVF+GGL +DA+E+D+R++ IG+++E L++D +G SKG+AFV
Sbjct: 253 PPKGSEVFVGGLHRDATEDDVREVFAKIGDIYEASTIFPPARLRLMRDPKTGASKGYAFV 312
Query: 151 AFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-P 209
+ A+ A D+L G+ + +S+ N LF+G++ + W+ ++ +++ G
Sbjct: 313 RYMEPTFAELAADQLSGYLIMGRPVGVLVSQDNQSLFVGHISQDWSLEQLEAHLKEAGIR 372
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST 269
GVD I DP P+RNRGF F+ + ++ A + KMT A+F+L G V WAEP +
Sbjct: 373 GVDHIIFQHDPMNPTRNRGFVFIEFKSHHEAARAHGKMTRADFRLSGQKVRVDWAEPLNE 432
Query: 270 PDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPG--KSGKRDFGFIHY 327
P SQVK++YV NLP + + LF +G++ ++V + ++DF F++Y
Sbjct: 433 PGED--VMSQVKSIYVANLPLEVDNELITTLFGEYGKIERIVLSKNLPTARRKDFAFVNY 490
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARP 357
ER++ALKAI +E+ G+ L+V LA+P
Sbjct: 491 EERANALKAIDGKHGFEVQGRTLQVTLAKP 520
>gi|440796160|gb|ELR17269.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 1122
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/266 (40%), Positives = 155/266 (58%), Gaps = 6/266 (2%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP GSEVF+GGL KD +E DL +GE+FE+ L+KD +GESKG+AFV F S + AK
Sbjct: 397 PPRGSEVFVGGLGKDVNEADLYSAFANVGEIFEIRLMKDATTGESKGYAFVRFTSPKFAK 456
Query: 160 RAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIK 218
A+ ++ KG+ + S N LF+G++ K W + + + + D GV TI L+K
Sbjct: 457 LAVQQVDGAVLKGRKVGVVHSNDNQTLFLGHLDKDWRQDDLDQHLRDAKIKGVTTITLMK 516
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
D +RNRGFAFV + ++ A + K+ F+L V WAEP + P S S
Sbjct: 517 DTTNMARNRGFAFVEFSSHEEAAKAHAKIMKPGFRLADVDVKVDWAEPLNEP--SEEVMS 574
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPG-KSGKR-DFGFIHYAERSSALKA 336
+VK++YV NLP + ++ LF GE+ ++V KS +R DF F++Y ERS+AL A
Sbjct: 575 KVKSIYVCNLPVDVNDDLIRSLFAEFGEIERIVLSKNLKSARRDDFAFVNYTERSAALAA 634
Query: 337 IKDTEKYEI-DGQVLEVALARPQTNK 361
I Y++ D VL+V LA+P T +
Sbjct: 635 IDARHGYKVDDDHVLDVTLAKPVTEQ 660
>gi|302848854|ref|XP_002955958.1| hypothetical protein VOLCADRAFT_107013 [Volvox carteri f.
nagariensis]
gi|300258684|gb|EFJ42918.1| hypothetical protein VOLCADRAFT_107013 [Volvox carteri f.
nagariensis]
Length = 827
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 180/310 (58%), Gaps = 25/310 (8%)
Query: 72 EDAVEDEDKRTASISEDEKEKHDQL------------LALPPHGSEVFIGGLPKDASEED 119
E A +D ++ + +EDE++++ + ++LPPHG+EVFI +P++A++
Sbjct: 58 EQAPDDVREQELATAEDERQRNQEHEEQQGAGDSEDPMSLPPHGTEVFISKVPREATDAQ 117
Query: 120 LRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCS---KDFKGKTIR 176
+R CE GEVF + + KD++S +KG+ F F+++E A++A+ L K+F G+ +
Sbjct: 118 VRAFCEMAGEVFALRIPKDRESNTNKGYCFCVFKARESAEKAMTILEGREVKEFPGRRVN 177
Query: 177 CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYN 236
S N+L+IG +P+ T +E +++ G++ IEL+ D + ++ RGF F+ +YN
Sbjct: 178 VVPSIVKNKLYIGQMPRDITREELEVLLKAEVVGLEKIELMMDKET-NQARGFGFIAFYN 236
Query: 237 NACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQ 296
+A A + +K++ F+L G+ V WA+PK +VK++YV NLPE T
Sbjct: 237 SAAATLALRKLSRPEFRLRGHQVQVMWADPK----RDEIGTEKVKSIYVGNLPEQYTEND 292
Query: 297 LKELFQRHGEVTKVV---TPPGKSGKRDFGFIHYAERSSALKAIKDTE--KYEIDGQVLE 351
L+ +F ++G V +V P + R++ FI+Y +RSSAL+A+ + E K+ + + L
Sbjct: 293 LRAIFSQYGTVERVTLLYMPDDPTKLRNYTFINYTDRSSALRAVSEAENKKHIMTDKELI 352
Query: 352 VALARPQTNK 361
V +A+PQ +
Sbjct: 353 VHMAKPQAQR 362
>gi|193683845|ref|XP_001950620.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Acyrthosiphon pisum]
Length = 533
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/388 (32%), Positives = 195/388 (50%), Gaps = 31/388 (7%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF G LP E++L L E G+++++ L+ D SG ++G+AFV + +KE A+
Sbjct: 155 PTAGCEVFCGKLPNTVFEDELIPLFEKCGKIYDLRLMMDPLSGTNRGYAFVTYTTKEEAE 214
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA EL + K GK I+ ++S N RLFIGN+PKS +++ + + G+ + +
Sbjct: 215 RATVELDGYEIKPGKNIKVNISVPNLRLFIGNIPKSKGKEDIMEEFGKITSGLTEVIIYS 274
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +++++++ N+K+ G V WA+P+ PD S
Sbjct: 275 SPDDRRKNRGFCFLEYDSHKAASVAKRRLSAPNYKVWGCDIIVDWADPQEEPDDE--TMS 332
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK LYV+NL + T +LKE F+ HG V +V +D+ FIH+ +R ALKA++
Sbjct: 333 KVKVLYVRNLTQEVTENRLKETFEVHGSVERV------KKIKDYAFIHFNDRGCALKALE 386
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE-------------GVYSCAAGVHPSGLPHAGYGS 385
+ +DG LEV+LA+P ++K+ + + A G+ P L G
Sbjct: 387 ELNGSNLDGATLEVSLAKPPSDKKKKEEILRARERRMFTNMQGRAFGLMPQPLSLMGAPR 446
Query: 386 FAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGY-VLQQPGVQM 444
Y +VS L +A P + PAG P G Q GV
Sbjct: 447 ---PGYRAVSNNLRMAGRGEFDWPWGFNSWMWPAGRWDAGAAGPWGTASTGNRQWHGVA- 502
Query: 445 PLPPPRPRRVERGPGGRGASSGGSDGSS 472
P R G GGR ++G S G+S
Sbjct: 503 ----PNNRSWGNGSGGRIGAAGNSSGAS 526
>gi|297611204|ref|NP_001065705.2| Os11g0139500 [Oryza sativa Japonica Group]
gi|108863976|gb|ABG22354.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215767918|dbj|BAH00147.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255679771|dbj|BAF27550.2| Os11g0139500 [Oryza sativa Japonica Group]
Length = 252
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 102/212 (48%), Positives = 140/212 (66%), Gaps = 21/212 (9%)
Query: 247 MTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGE 306
M+S FKLD N PTVSWA+PK ++ + + SQVK++YVKNLP+N T QLK LF+ HGE
Sbjct: 1 MSSPTFKLDSNAPTVSWADPK---NNDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGE 57
Query: 307 VTKVVTPPGKSGKRD-FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP----QTNK 361
+ KVV PP + G + +GF+H+ +RS A++A+++TE+YE+DGQVL+ +LA+P + +
Sbjct: 58 IEKVVLPPSRGGHDNRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDD 117
Query: 362 RTEGVYSCAAGVHPSGLPHAGYGSFAGT-AYGSVSTGLGVAAGAGLQQPMIYGRGQMPAG 420
R S A + PS P GYG + AYG AA A QPM+Y + P G
Sbjct: 118 RVPLPSSNGAPLLPS-YPPLGYGIMSVPGAYG--------AAPASTAQPMLYA-PRAPPG 167
Query: 421 MHMVPMVLPDGRIGYVLQQPGVQMPL--PPPR 450
MVPM+LPDGR+ YV+QQPG Q+PL PPP+
Sbjct: 168 AAMVPMMLPDGRLVYVVQQPGGQLPLASPPPQ 199
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
V++ LPK+ ++ L+ L E GE+ +V L + G + FV F+ + +A RA+
Sbjct: 33 SVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSR-GGHDNRYGFVHFKDRSMAMRALQN 91
Query: 165 LCSKDFKGKTIRCSMSE 181
+ G+ + CS+++
Sbjct: 92 TERYELDGQVLDCSLAK 108
>gi|47212367|emb|CAF89932.1| unnamed protein product [Tetraodon nigroviridis]
Length = 636
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/268 (35%), Positives = 159/268 (59%), Gaps = 9/268 (3%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A PP G+E+F+G +P+D E++L L E G ++++ L+ D SG ++G+AFV F SKE
Sbjct: 156 AQPPVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEA 215
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
A+ A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 216 AQEAVKLCNNHEIRPGKQIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVIL 275
Query: 217 IKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
PQ S+NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 276 YLQPQDKSKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNMVTVEWADPMEDPDPEVMA 335
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
+VK L+V+NL + T + L++ F +G + +V +D+ FIH+ ER A+KA
Sbjct: 336 --KVKVLFVRNLANSVTEEILEKAFSEYGNLERV------KKLKDYAFIHFEERDGAVKA 387
Query: 337 IKDTEKYEIDGQVLEVALARPQTNKRTE 364
+++ E++G+ +E+ A+P KR E
Sbjct: 388 LEELNGKELEGEPIEIVFAKPPDQKRKE 415
>gi|410915935|ref|XP_003971442.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Takifugu rubripes]
Length = 637
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/266 (35%), Positives = 158/266 (59%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G+E+F+G +P+D E++L L E G ++++ L+ D SG ++G+AFV F SKE A+
Sbjct: 162 PPVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEAAQ 221
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 222 EAVKLCNNHEIRPGKQIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVILYL 281
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
PQ S+NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 282 QPQDKSKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNMVTVEWADPMEDPDPEVMA-- 339
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL + T + L++ F +G + +V +D+ FIH+ ER A+KA++
Sbjct: 340 KVKVLFVRNLANSVTEEILEKSFSEYGNLERV------KKLKDYAFIHFEERDGAVKALE 393
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ E++G+ +E+ A+P KR E
Sbjct: 394 EMNGKELEGEPIEIVFAKPPDQKRKE 419
>gi|348531623|ref|XP_003453308.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Oreochromis niloticus]
Length = 535
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 161/269 (59%), Gaps = 11/269 (4%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G+E+F+G +P+D E++L L E G ++++ L+ D SG ++G+AFV F +KE
Sbjct: 155 AQPTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEA 214
Query: 158 AKRAIDELCSKD--FKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
A++A+ +LC+ + GK I +S NNRLF+G++PKS T+++ + V G++ +
Sbjct: 215 AQQAV-KLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFAKVTEGLNDVI 273
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
L P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD
Sbjct: 274 LYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIEDPDPEVM 333
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALK 335
A +VK L+V+NL T + L++ F +HG++ +V +D+ FIH+ ER SA+K
Sbjct: 334 A--KVKVLFVRNLASTVTEEILEKTFSQHGKLERV------KKLKDYAFIHFEERESAVK 385
Query: 336 AIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+ D +++G+ +E+ A+P KR E
Sbjct: 386 ALTDLNGKDLEGEHIEIVFAKPPDQKRKE 414
>gi|383847619|ref|XP_003699450.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Megachile rotundata]
Length = 664
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 163/264 (61%), Gaps = 9/264 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF G +PKD E++L L E G+++++ L+ D +G ++G+AF+ F ++E A+
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
+A+ EL + + K GK ++ ++S N RLF+GN+PKS ++E + + G+ + +
Sbjct: 219 QAVKELDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLTEVIIYS 278
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +++++++ K+ G V WA+P+ PD S
Sbjct: 279 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQ--TMS 336
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+V+ LYVKNL ++ + ++LKE+F+++G + +V +D+ F+H+ ER +A+KA+
Sbjct: 337 KVRVLYVKNLTQDCSEEKLKEVFEQYGNIERV------KKIKDYAFVHFEERDNAVKAMN 390
Query: 339 DTEKYEIDGQVLEVALARPQTNKR 362
+ EI G +EV+LA+P ++K+
Sbjct: 391 ELNGKEIGGSHIEVSLAKPPSDKK 414
>gi|242011880|ref|XP_002426671.1| Heterogeneous nuclear ribonucleoprotein Q, putative [Pediculus
humanus corporis]
gi|212510842|gb|EEB13933.1| Heterogeneous nuclear ribonucleoprotein Q, putative [Pediculus
humanus corporis]
Length = 548
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 161/264 (60%), Gaps = 9/264 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF G +PKD E++L L E G ++++ L+ D +G+++G+AFV F SKE A+
Sbjct: 173 PGSGCEVFCGKIPKDMYEDELIPLFEKCGSIWDLRLMMDPMTGQNRGYAFVTFTSKEAAQ 232
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ EL + + K GK ++ ++S N RLF+GN+PKS ++E + + G+ + +
Sbjct: 233 NAVRELDNHEMKPGKPLKVNISVPNLRLFVGNIPKSKGKEEIMEEFSKLAAGLTKVIIYS 292
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD A S
Sbjct: 293 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRVKVWGCDIIVDWADPQEEPD--AETMS 350
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK LYV+NL ++ + ++LKE F+ +G++ +V +D+ FIH+ +R +A+KA+
Sbjct: 351 KVKVLYVRNLTQDCSEEKLKESFEVYGKIDRV------KKIKDYAFIHFEDRDNAIKALN 404
Query: 339 DTEKYEIDGQVLEVALARPQTNKR 362
+ ++ G +EV+LA+P ++K+
Sbjct: 405 ELNGKDLAGACIEVSLAKPPSDKK 428
>gi|270001371|gb|EEZ97818.1| hypothetical protein TcasGA2_TC000185 [Tribolium castaneum]
Length = 638
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 179/324 (55%), Gaps = 33/324 (10%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F +++ A+
Sbjct: 173 PGAGCEVFCGKIPKDMYEDELIPLFEGCGTIWDLRLMMDPMTGTNRGYAFVTFTTRDAAQ 232
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
+A+ +L + + K GKT++ ++S N RLF+GN+PKS ++E + + G+ + +
Sbjct: 233 QAVQKLDNHEIKPGKTLKINISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLVEVIIYS 292
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD S
Sbjct: 293 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TMS 350
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK LYV+NL + + ++LKE F+ +G+V +V +D+ FIH+ +R +A+KA++
Sbjct: 351 KVKVLYVRNLTQEISEEKLKEAFEAYGKVERV------KKIKDYAFIHFEDRENAVKAME 404
Query: 339 DTEKYEIDGQVLEVALARPQTNK------------RTEGVYSCAAGVHPSGLPHAGYGSF 386
+ + E+ G +EV+LA+P ++K R + G+ P +P G
Sbjct: 405 ELDGKEMGGSNIEVSLAKPPSDKKKKEEILRARERRMMQMMQVRGGMMPGAMPLRG---- 460
Query: 387 AGTAYGSVSTGLGVAAGAGLQQPM 410
G G +GAG++ PM
Sbjct: 461 --------PPGQGARSGAGMRGPM 476
>gi|307173250|gb|EFN64303.1| Heterogeneous nuclear ribonucleoprotein Q [Camponotus floridanus]
Length = 683
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 164/264 (62%), Gaps = 9/264 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF G +PKD E++L L E G+++++ L+ D SG ++G+AF+ F ++E A+
Sbjct: 156 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQ 215
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
+A+ EL + + K GK+++ ++S N RLF+GN+PKS ++E + + G+ + +
Sbjct: 216 QAVRELDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLTEVIIYS 275
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +++++++ K+ G V WA+P+ PD S
Sbjct: 276 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQ--TMS 333
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+V+ LYV+NL ++ + ++LKE F+++G++ +V +D+ FIH+ +R +A+KA+
Sbjct: 334 KVRVLYVRNLTQDCSEEKLKESFEQYGKIERV------KKIKDYAFIHFEDRDNAVKAMN 387
Query: 339 DTEKYEIDGQVLEVALARPQTNKR 362
+ E+ G +EV+LA+P ++K+
Sbjct: 388 ELNGKEMGGSHIEVSLAKPPSDKK 411
>gi|380011709|ref|XP_003689940.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q-like [Apis florea]
Length = 667
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 159/264 (60%), Gaps = 9/264 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF G +PKD E++L L E G+++++ L+ D +G ++G+AF+ F ++E A+
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 160 RAIDELCSKDF-KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
+A+ EL + KGK I ++S N+RLF+GN+PK+ + + PG+ + +
Sbjct: 219 QAVRELNDYEIRKGKKIGVTVSYNNHRLFVGNIPKNRDRDDLFEEFTKHAPGLTEVIIYS 278
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +++++++ K+ G V WA+P+ PD S
Sbjct: 279 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQ--TMS 336
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+V+ LYVKNL ++ + ++LKE F+++G + +V +D+ F+H+ ER +A+KA+
Sbjct: 337 KVRVLYVKNLTQDCSEEKLKESFEQYGNIERV------KKIKDYAFVHFEERDNAVKAMN 390
Query: 339 DTEKYEIDGQVLEVALARPQTNKR 362
+ EI G +EV+LA+P ++K+
Sbjct: 391 ELNGKEIGGSHIEVSLAKPPSDKK 414
>gi|432936836|ref|XP_004082303.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Oryzias
latipes]
Length = 542
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/267 (35%), Positives = 159/267 (59%), Gaps = 11/267 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D SG ++G+AFV F SKE A+
Sbjct: 158 PTIGTEIFVGKIPRDLFEDELVPLFERAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEAAQ 217
Query: 160 RAIDELC--SKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
+A+ +LC S+ GK I +S NNRLF+G++PKS T+++ + V G++ + L
Sbjct: 218 QAV-KLCNNSEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIIEEFSKVTEGLNDVILY 276
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 277 HQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA- 335
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER SA+KA+
Sbjct: 336 -KVKVLFVRNLASAVTEELLEKTFSQFGKLERV------KKLKDYAFIHFEERDSAVKAL 388
Query: 338 KDTEKYEIDGQVLEVALARPQTNKRTE 364
D +++G+ +E+ A+P KR E
Sbjct: 389 GDLNGKDLEGEHIEIVFAKPPDQKRKE 415
>gi|350409228|ref|XP_003488661.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Bombus
impatiens]
Length = 664
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 162/264 (61%), Gaps = 9/264 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF G +PKD E++L L E G+++++ L+ D +G ++G+AF+ F ++E A+
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
+A+ EL + + K GK ++ ++S N RLF+GN+PKS ++E + + G+ + +
Sbjct: 219 QAVRELDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLTEVIIYS 278
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +++++++ K+ G V WA+P+ PD S
Sbjct: 279 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQ--TMS 336
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+V+ LYVKNL ++ + ++LKE F+++G + +V +D+ F+H+ ER +A+KA+
Sbjct: 337 KVRVLYVKNLTQDCSEEKLKESFEQYGNIERV------KKIKDYAFVHFEERDNAVKAMN 390
Query: 339 DTEKYEIDGQVLEVALARPQTNKR 362
+ EI G +EV+LA+P ++K+
Sbjct: 391 ELNGKEIGGSHIEVSLAKPPSDKK 414
>gi|328789990|ref|XP_392307.4| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Apis
mellifera]
Length = 664
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 162/264 (61%), Gaps = 9/264 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF G +PKD E++L L E G+++++ L+ D +G ++G+AF+ F ++E A+
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
+A+ EL + + K GK ++ ++S N RLF+GN+PKS ++E + + G+ + +
Sbjct: 219 QAVRELDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLTEVIIYS 278
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +++++++ K+ G V WA+P+ PD S
Sbjct: 279 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQ--TMS 336
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+V+ LYVKNL ++ + ++LKE F+++G + +V +D+ F+H+ ER +A+KA+
Sbjct: 337 KVRVLYVKNLTQDCSEEKLKESFEQYGNIERV------KKIKDYAFVHFEERDNAVKAMN 390
Query: 339 DTEKYEIDGQVLEVALARPQTNKR 362
+ EI G +EV+LA+P ++K+
Sbjct: 391 ELNGKEIGGSHIEVSLAKPPSDKK 414
>gi|347965861|ref|XP_003435825.1| AGAP001419-PC [Anopheles gambiae str. PEST]
gi|333470322|gb|EGK97589.1| AGAP001419-PC [Anopheles gambiae str. PEST]
Length = 532
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 158/264 (59%), Gaps = 9/264 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P +G EVF G +PKD E++L L E G+++++ L+ D +G ++G+AFV F S++ A
Sbjct: 164 PGNGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAAS 223
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ EL + + GK I ++S N+RLF+GN+PK+ E + PG+ + +
Sbjct: 224 NAVRELNDYEIRNGKKIGVTISFNNHRLFVGNIPKNRDRDELLEEFAKHAPGLVEVIIYS 283
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +++++ + K+ V WA+P+ PD S
Sbjct: 284 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWNCDIIVDWADPQEEPDEQ--TMS 341
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK LYV+NL ++T+ ++LKE F++ G V +V +D+ F+H+ +R +A+KA+K
Sbjct: 342 KVKVLYVRNLTQDTSEEKLKESFEQFGRVERV------KKIKDYAFVHFEDRDNAVKAMK 395
Query: 339 DTEKYEIDGQVLEVALARPQTNKR 362
D + E+ G +EV+LA+P ++K+
Sbjct: 396 DLDGKEVGGSNIEVSLAKPPSDKK 419
>gi|241236734|ref|XP_002400928.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
gi|215496107|gb|EEC05748.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
Length = 438
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 158/264 (59%), Gaps = 9/264 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF+G +PKD E++L L E G ++++ L+ D SG ++G+AF+ F +++ A
Sbjct: 163 PASGCEVFVGKIPKDMFEDELIPLFEKCGRIWDLRLMMDPLSGLNRGYAFITFCNRDGAH 222
Query: 160 RAIDELCSKDF-KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
++ EL + + KGK I ++S N+RLF+GN+PK+ ++E + PG+ + +
Sbjct: 223 NSVRELDNYEIRKGKYIGVTISINNHRLFVGNIPKNRGKEELYEEFSKHAPGLTEVIIYS 282
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +++++++ K+ V WA+P+ PD A
Sbjct: 283 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWSCDIIVDWADPQEEPDQETMA-- 340
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK LYV+NL + T ++LKELF++HG V +V +D+ F+H+ ER A+KA+
Sbjct: 341 KVKVLYVRNLTADVTEERLKELFEQHGRVERV------KKIKDYAFVHFEERDHAVKAMN 394
Query: 339 DTEKYEIDGQVLEVALARPQTNKR 362
+ ++ G +EV+LA+P ++K+
Sbjct: 395 QLQGKDLCGAPMEVSLAKPPSDKK 418
>gi|410898108|ref|XP_003962540.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Takifugu
rubripes]
Length = 539
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 160/269 (59%), Gaps = 11/269 (4%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G+E+F+G +P+D E++L L E G ++++ L+ D SG ++G+AFV F +KE
Sbjct: 156 AQPTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEA 215
Query: 158 AKRAIDELCSKD--FKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
A++A+ +LC+ + GK I +S NNRLF+G++PKS T+++ + V G++ +
Sbjct: 216 AQQAV-KLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIIEEFSKVTEGLNDVI 274
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
L P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD
Sbjct: 275 LYLQPVDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPLEDPDPEVM 334
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALK 335
A +VK L+V+NL + T + L++ F + G++ +V +D+ FIH+ ER A+K
Sbjct: 335 A--KVKVLFVRNLASSVTEELLEKAFSQFGKLERV------KKLKDYAFIHFEERDGAVK 386
Query: 336 AIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+ D +++G+ +E+ A+P KR E
Sbjct: 387 ALADLNGKDLEGEHIEIVFAKPPDQKRKE 415
>gi|307212325|gb|EFN88129.1| Heterogeneous nuclear ribonucleoprotein Q [Harpegnathos saltator]
Length = 649
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 163/264 (61%), Gaps = 9/264 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF G +PKD E++L L E G+++++ L+ D SG ++G+AF+ F ++E A+
Sbjct: 150 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQ 209
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
+A+ EL + + K GK+++ ++S N RLF+GN+PKS ++E + G+ + +
Sbjct: 210 QAVRELDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEILDEFGKLTAGLTEVIIYS 269
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +++++++ K+ G V WA+P+ PD S
Sbjct: 270 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQ--TMS 327
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+V+ LYV+NL ++ + ++LKE F+++G++ +V +D+ FIH+ +R +A++A+
Sbjct: 328 KVRVLYVRNLTQDCSEEKLKESFEQYGKIERV------KKIKDYAFIHFEDRDNAVRAMN 381
Query: 339 DTEKYEIDGQVLEVALARPQTNKR 362
+ E+ G +EV+LA+P ++K+
Sbjct: 382 ELNGKEMGGSHIEVSLAKPPSDKK 405
>gi|345481380|ref|XP_001602182.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like, partial
[Nasonia vitripennis]
Length = 661
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 162/264 (61%), Gaps = 9/264 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF G +PKD E++L L E G+++++ L+ D +G ++G+AF+ F +++ A+
Sbjct: 160 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFITFTNRDAAQ 219
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
+A+ EL + + K GK+++ ++S N RLF+GN+PKS ++E + G+ + +
Sbjct: 220 QAVRELDNYEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEILDEFGKLTAGLTEVIIYS 279
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD S
Sbjct: 280 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRMKVWGCDIIVDWADPQEEPDEQ--TMS 337
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+V+ LYV+NL ++ + ++LKE F+++G++ +V +D+ FIH+ ER A+KA++
Sbjct: 338 KVRVLYVRNLTQDCSEEKLKECFEQYGKIERV------KKIKDYAFIHFEERECAVKAMR 391
Query: 339 DTEKYEIDGQVLEVALARPQTNKR 362
+ E+ G +EV+LA+P ++K+
Sbjct: 392 ELNGKEMGGSHIEVSLAKPPSDKK 415
>gi|156377784|ref|XP_001630826.1| predicted protein [Nematostella vectensis]
gi|156217854|gb|EDO38763.1| predicted protein [Nematostella vectensis]
Length = 587
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 158/257 (61%), Gaps = 10/257 (3%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
S+VFIG +P+D E++L + E G +++ L+ D SG +KGFAF F +K+ A+ A+
Sbjct: 152 SQVFIGKVPRDCFEDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVK 211
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
+L +K+ + GK + +S N+RLF+G++PK+ +++E + V G+D + +
Sbjct: 212 KLDNKEIRPGKRLGVCISVANSRLFVGSIPKTKSKQEILEEFSKVTNGLDDVIVYLSADQ 271
Query: 223 PSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGN-TPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAF+ Y ++ A +R+++ S K+ GN TV WA+P+ PD A +VK
Sbjct: 272 KGKNRGFAFLEYESHQAASLARRRLASGRIKVWGNIVVTVDWADPQEEPDDD--AMKKVK 329
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTE 341
+Y++NL + T ++LKE + ++G V +V +D+ F+H+ ER ALKAI++T+
Sbjct: 330 VVYLRNLSPSITEEKLKEEYSQYGAVDRV------KKLKDYAFVHFTERDHALKAIEETD 383
Query: 342 KYEIDGQVLEVALARPQ 358
E+DG +E +LA+PQ
Sbjct: 384 GKEMDGLKIEASLAKPQ 400
>gi|427784529|gb|JAA57716.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Rhipicephalus pulchellus]
Length = 608
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 158/261 (60%), Gaps = 9/261 (3%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +PKD E++L L E G+++++ L+ D SG ++G+AF+ F ++E A ++
Sbjct: 159 GCEVFVGKIPKDMFEDELIPLFEKCGKIWDLRLMMDPLSGLNRGYAFITFCNREGAHNSV 218
Query: 163 DELCSKDF-KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + KGK I ++S N+RLF+GN+PK+ ++E + PG+ + + P
Sbjct: 219 RELDNHEIRKGKYIGVTISINNHRLFVGNIPKNRGKEELFEEFSKHAPGLTEVIIYSSPD 278
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGF F+ Y ++ A +++++++ K+ V WA+P+ PD A +VK
Sbjct: 279 DKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWSCDIIVDWADPQEEPDEETMA--KVK 336
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTE 341
LYV+NL + T ++LKELF+ HG V +V +D+ F+H+ ER A++A++ +
Sbjct: 337 VLYVRNLTTDVTEEKLKELFEAHGRVERV------KKIKDYAFVHFEERDHAVRAMEQLQ 390
Query: 342 KYEIDGQVLEVALARPQTNKR 362
++ G +EV+LA+P ++K+
Sbjct: 391 GKDLCGAPMEVSLAKPPSDKK 411
>gi|189234965|ref|XP_973687.2| PREDICTED: similar to CG17838 CG17838-PB [Tribolium castaneum]
Length = 905
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/330 (30%), Positives = 182/330 (55%), Gaps = 42/330 (12%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F +++ A+
Sbjct: 173 PGAGCEVFCGKIPKDMYEDELIPLFEGCGTIWDLRLMMDPMTGTNRGYAFVTFTTRDAAQ 232
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG------PGVD 212
+A+ +L + + K GKT++ ++S N RLF+GN+PKS ++E ++E+ G G+
Sbjct: 233 QAVQKLDNHEIKPGKTLKINISVPNLRLFVGNIPKSKGKEE---ILEEFGKLTGYTAGLV 289
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ + P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 290 EVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDE 349
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S+VK LYV+NL + + ++LKE F+ +G+V +V +D+ FIH+ +R +
Sbjct: 350 Q--TMSKVKVLYVRNLTQEISEEKLKEAFEAYGKVERV------KKIKDYAFIHFEDREN 401
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNK------------RTEGVYSCAAGVHPSGLPH 380
A+KA+++ + E+ G +EV+LA+P ++K R + G+ P +P
Sbjct: 402 AVKAMEELDGKEMGGSNIEVSLAKPPSDKKKKEEILRARERRMMQMMQVRGGMMPGAMPL 461
Query: 381 AGYGSFAGTAYGSVSTGLGVAAGAGLQQPM 410
G G G +GAG++ PM
Sbjct: 462 RG------------PPGQGARSGAGMRGPM 479
>gi|118794756|ref|XP_321714.3| AGAP001419-PA [Anopheles gambiae str. PEST]
gi|347965857|ref|XP_003435823.1| AGAP001419-PB [Anopheles gambiae str. PEST]
gi|347965859|ref|XP_003435824.1| AGAP001419-PD [Anopheles gambiae str. PEST]
gi|116116446|gb|EAA43192.3| AGAP001419-PA [Anopheles gambiae str. PEST]
gi|333470321|gb|EGK97588.1| AGAP001419-PB [Anopheles gambiae str. PEST]
gi|333470323|gb|EGK97590.1| AGAP001419-PD [Anopheles gambiae str. PEST]
Length = 532
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 159/264 (60%), Gaps = 9/264 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P +G EVF G +PKD E++L L E G+++++ L+ D +G ++G+AFV F S++ A
Sbjct: 164 PGNGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAAS 223
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ EL + + K G ++ ++S N RLF+GN+PKS ++E + G+ + +
Sbjct: 224 NAVRELNNYEIKPGNCLKINVSVPNLRLFVGNIPKSKGKEEILDEFGKLTAGLVEVIIYS 283
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +++++ + K+ V WA+P+ PD S
Sbjct: 284 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWNCDIIVDWADPQEEPDEQ--TMS 341
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK LYV+NL ++T+ ++LKE F++ G V +V +D+ F+H+ +R +A+KA+K
Sbjct: 342 KVKVLYVRNLTQDTSEEKLKESFEQFGRVERV------KKIKDYAFVHFEDRDNAVKAMK 395
Query: 339 DTEKYEIDGQVLEVALARPQTNKR 362
D + E+ G +EV+LA+P ++K+
Sbjct: 396 DLDGKEVGGSNIEVSLAKPPSDKK 419
>gi|46362505|gb|AAH66570.1| Synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
Length = 560
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 157/267 (58%), Gaps = 11/267 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D SG ++G+AFV F +KE A+
Sbjct: 159 PTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQ 218
Query: 160 RAIDELCSKD--FKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
+A+ +LC+ + GK I +S NNRLF+G++PKS T+ + + V G++ + L
Sbjct: 219 KAV-KLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKVTEGLNDVILY 277
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 HQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA- 336
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA+
Sbjct: 337 -KVKVLFVRNLASTVTEELLEKTFCQFGKLERV------KKLKDYAFIHFEERDGAVKAL 389
Query: 338 KDTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 AELHGKDLEGEPIEIVFAKPPDQKRKE 416
>gi|303272115|ref|XP_003055419.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463393|gb|EEH60671.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 291
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 166/297 (55%), Gaps = 35/297 (11%)
Query: 94 DQLLALPPHGSEVFIGGLPKDASEEDLRDLC----EPIGEVFEVGLVKDKDSGESKGFAF 149
D LL P H E+F+GG+PK ASE D+R C E + V LV D +G+++G+AF
Sbjct: 1 DDLLKKPAHSCELFLGGIPKSASEADVRAFCDDGAEGVASPSSVQLVIDTATGQNRGYAF 60
Query: 150 VAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
VA+ S+E A A ++L K + K IR S+ +T +R+FIGNV + T E + + D G
Sbjct: 61 VAYPSREDAAAAAEKLNEKAIEDKKIRVSVKQTKHRVFIGNVDRMKTRAEVIQGLRDAGC 120
Query: 210 -GVDTIELIK--DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEP 266
GV+ +E+ K +P PS+ +GF F +YN +CA+ + + ++ + L G T WA+P
Sbjct: 121 GGVEKLEMPKNRNPAYPSQTKGFGFADFYNASCAERAMKILSESRLFL-GRPVTARWADP 179
Query: 267 KSTPDHSAAAASQVKALYVKNLPENTTT-----KQLKELFQRHGEVTKVVT---PPG--- 315
K PD S + VK++YV NLP + ++LK LF ++G+V V PG
Sbjct: 180 K-LPDPS----TTVKSVYVGNLPPSLVADEGGEEKLKALFGKYGDVETVFVYKPRPGDAS 234
Query: 316 KSGKRDFGFIHYAERSSALKAIKDTEK-----------YEIDGQVLEVALARPQTNK 361
S KR+F F+HYA R SAL A + ++ EIDG L+V +A+P ++
Sbjct: 235 ASAKRNFAFVHYASRESALAAAEAGKRSDDADATPSAPIEIDGCALDVTMAKPMKDQ 291
>gi|37681889|gb|AAQ97822.1| NS1-associated protein 1 [Danio rerio]
Length = 558
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 157/267 (58%), Gaps = 11/267 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D SG ++G+AFV F +KE A+
Sbjct: 159 PTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQ 218
Query: 160 RAIDELCSKD--FKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
+A+ +LC+ + GK I +S NNRLF+G++PKS T+ + + V G++ + L
Sbjct: 219 KAV-KLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKVTEGLNDVILY 277
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 HQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA- 336
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA+
Sbjct: 337 -KVKVLFVRNLASTVTEELLEKTFCQFGKLERV------KKLKDYAFIHFEERDGAVKAL 389
Query: 338 KDTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 AELHGKDLEGEPIEIVFAKPPDQKRKE 416
>gi|157132620|ref|XP_001656100.1| heterogeneous nuclear ribonucleoprotein r [Aedes aegypti]
gi|108881674|gb|EAT45899.1| AAEL002879-PA, partial [Aedes aegypti]
Length = 517
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 160/264 (60%), Gaps = 9/264 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P +G EVF G +PKD E++L L E G+++++ L+ D +G ++G+AFV F S++ A
Sbjct: 126 PGNGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAAS 185
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ EL + + K GK ++ ++S N RLF+GN+PKS ++E + G+ + +
Sbjct: 186 NAVRELDNYEIKSGKCLKINVSVPNLRLFVGNIPKSKGKEEILDEFGKLTAGLMEVIIYS 245
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD S
Sbjct: 246 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TMS 303
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK LYV+NL ++T+ ++LKE F++ G+V +V +D+ FIH+ +R A+ A+K
Sbjct: 304 KVKVLYVRNLTQDTSEEKLKESFEQFGKVERV------KKIKDYAFIHFEDRDHAVNAMK 357
Query: 339 DTEKYEIDGQVLEVALARPQTNKR 362
+ + ++ G LEV+LA+P ++K+
Sbjct: 358 ELDGKDLGGSNLEVSLAKPPSDKK 381
>gi|41054427|ref|NP_955973.1| synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
gi|28422490|gb|AAH46902.1| Synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
Length = 560
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 157/267 (58%), Gaps = 11/267 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D SG ++G+AFV F +KE A+
Sbjct: 159 PTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQ 218
Query: 160 RAIDELCSKD--FKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
+A+ +LC+ + GK I +S NNRLF+G++PKS T+ + + V G++ + L
Sbjct: 219 KAV-KLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKVTEGLNDVILY 277
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 HQPDDKKKNRGFCFLGYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA- 336
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA+
Sbjct: 337 -KVKVLFVRNLASTVTEELLEKTFCQFGKLERV------KKLKDYAFIHFEERDGAVKAL 389
Query: 338 KDTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 AELHGKDLEGEPIEIVFAKPPDQKRKE 416
>gi|224613218|gb|ACN60188.1| Heterogeneous nuclear ribonucleoprotein Q [Salmo salar]
Length = 583
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 157/268 (58%), Gaps = 9/268 (3%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G+E+F+G +P+D E++L L E G ++++ L+ D SG ++G+AFV F +KE
Sbjct: 111 AQPTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEA 170
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
A A++ + + + GK I +S NNRLF+G++PKS T+++ + V G++ + L
Sbjct: 171 ASEAVNLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQMVEEFAKVTEGLNDVIL 230
Query: 217 IKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 231 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNAVTVEWADPIEEPDSEVMA 290
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
+VK L+V+NL + T + L++ F + G + +V +D+ FIH+ ER SA+KA
Sbjct: 291 --KVKVLFVRNLANSVTEEILEKSFGQFGRLERV------KKLKDYAFIHFDERDSAVKA 342
Query: 337 IKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ + +++G+ +++ A+P KR E
Sbjct: 343 LAEMNGKDLEGEHIDIVFAKPPDQKRKE 370
>gi|348518315|ref|XP_003446677.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Oreochromis niloticus]
Length = 629
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G+E+F+G +P+D E++L L E G ++++ L+ D S ++G+AF+ F SKE A+
Sbjct: 158 PPVGTEIFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSSLNRGYAFITFCSKEGAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANGVTEELLEKSFSEFGKLERV------KKLKDYAFIHFEERDGAVKALE 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ E++G+ +E+ A+P KR E
Sbjct: 390 EMNGKELEGEPIEIVFAKPPDQKRKE 415
>gi|449676978|ref|XP_002157894.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Hydra
magnipapillata]
Length = 623
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 127/380 (33%), Positives = 197/380 (51%), Gaps = 42/380 (11%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
S++FIG LP+D E++L + EP G ++++ ++ D SG +KGFAF + +KE A A+
Sbjct: 164 SQIFIGKLPRDMYEDELVPMFEPHGTIYDLRIMVDPFSGLNKGFAFCTYTTKEAATLAVK 223
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEK----EFRKVIEDVGPGVDTIELIK 218
E+ K + GKT+ +S+ NNRLF+G++PKS T++ EF +E++ D I I
Sbjct: 224 EMDGKQVRDGKTLGVCLSQANNRLFVGSIPKSKTKQQIFDEFASKVENLS---DVIVYIS 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGN-TPTVSWAEPKSTPDHSAAAA 277
+ S+NRGFAF+ + + A +R++ + K+ GN TPTV WA+P PD +
Sbjct: 281 S-EDKSKNRGFAFLEFTTHKDASLARRRFMTGRIKVFGNITPTVDWADPVEEPDDNVM-- 337
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK +YV+NL +L ELF+++G V KV +D+ FIH+ R A++AI
Sbjct: 338 SKVKVVYVRNLSPAIEETKLNELFKQYGAVEKV------KKLKDYAFIHFVNRDDAVRAI 391
Query: 338 KDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTG 397
++ ++D +EV+LA+PQT K+ A G + +GS++
Sbjct: 392 EELNGQDLDDLKIEVSLAKPQTEKK-----------------EARRGQ---SGFGSLNQS 431
Query: 398 LGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIG-YVLQQPGVQMPLPPPRPRR--- 453
G G M G G P+G + +G G Y PPP+P+R
Sbjct: 432 EGGNVRGGGHGGMRGGYGNFPSGGYNNDYGFNNGGYGNYDDSSYDNYYGGPPPQPQRGGG 491
Query: 454 VERGPGGRGASSGGSDGSSG 473
RG RG GGS S G
Sbjct: 492 ALRGAPSRGGPRGGSFSSRG 511
>gi|171846506|gb|AAI61767.1| syncrip protein [Xenopus (Silurana) tropicalis]
Length = 638
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 173 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 232
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 233 EAVKLYNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 292
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 293 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-- 350
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 351 KVKVLFVRNLANTVTEEILEKAFGQFGKLERV------KKLKDYAFIHFDERVGAVKAME 404
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ E++G+ +E+ A+P KR E
Sbjct: 405 EMNGKELEGENIEIVFAKPPDQKRKE 430
>gi|345326436|ref|XP_003431043.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q
[Ornithorhynchus anatinus]
Length = 562
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|5031512|gb|AAD38198.1|AF155568_1 NSAP1 protein [Homo sapiens]
Length = 562
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSQVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|417411732|gb|JAA52293.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 577
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 173 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 232
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 233 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 292
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 293 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 350
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 351 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 404
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 405 EMNGKDLEGENIEIVFAKPPDQKRKE 430
>gi|301608798|ref|XP_002933974.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Xenopus
(Silurana) tropicalis]
Length = 770
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 305 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 364
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 365 EAVKLYNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 424
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 425 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-- 482
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 483 KVKVLFVRNLANTVTEEILEKAFGQFGKLERV------KKLKDYAFIHFDERVGAVKAME 536
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ E++G+ +E+ A+P KR E
Sbjct: 537 EMNGKELEGENIEIVFAKPPDQKRKE 562
>gi|194216236|ref|XP_001915171.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Equus caballus]
Length = 562
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|395857930|ref|XP_003801333.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Otolemur garnettii]
Length = 562
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|126306127|ref|XP_001362774.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Monodelphis domestica]
Length = 561
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|426353897|ref|XP_004044411.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 562
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|228008293|ref|NP_001153148.1| heterogeneous nuclear ribonucleoprotein Q isoform 5 [Homo sapiens]
gi|390461868|ref|XP_003732753.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Callithrix
jacchus]
gi|119569009|gb|EAW48624.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_c [Homo sapiens]
Length = 561
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|149637545|ref|XP_001510103.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Ornithorhynchus anatinus]
Length = 623
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|228008400|ref|NP_001153149.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Homo sapiens]
gi|296198708|ref|XP_002746830.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Callithrix jacchus]
gi|301775581|ref|XP_002923211.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Ailuropoda melanoleuca]
gi|332218413|ref|XP_003258350.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778175|ref|XP_003431698.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Canis lupus familiaris]
gi|348578328|ref|XP_003474935.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Cavia porcellus]
gi|358413802|ref|XP_589161.5| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Bos
taurus]
gi|359068803|ref|XP_002690248.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Bos
taurus]
gi|395737455|ref|XP_003776918.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Pongo abelii]
gi|397504632|ref|XP_003822888.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Pan
paniscus]
gi|402867568|ref|XP_003897915.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Papio anubis]
gi|426234728|ref|XP_004011344.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Ovis aries]
gi|119569010|gb|EAW48625.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_d [Homo sapiens]
gi|119569011|gb|EAW48626.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_d [Homo sapiens]
gi|380783245|gb|AFE63498.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|383409779|gb|AFH28103.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|384940996|gb|AFI34103.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|410227734|gb|JAA11086.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410255522|gb|JAA15728.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410304908|gb|JAA31054.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
Length = 562
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|410959606|ref|XP_004001668.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q [Felis catus]
Length = 562
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|417412066|gb|JAA52448.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 638
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 173 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 232
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 233 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 292
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 293 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 350
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 351 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 404
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 405 EMNGKDLEGENIEIVFAKPPDQKRKE 430
>gi|350578257|ref|XP_001927626.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Sus
scrofa]
Length = 623
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|344264673|ref|XP_003404416.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Loxodonta africana]
Length = 559
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 155 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 214
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 215 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 274
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 275 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 332
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 333 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 386
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 387 EMNGKDLEGENIEIVFAKPPDQKRKE 412
>gi|348578330|ref|XP_003474936.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Cavia porcellus]
Length = 533
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 245
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 246 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 299
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 300 EMNGKDLEGENIEIVFAKPPDQKRKE 325
>gi|326916225|ref|XP_003204410.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Meleagris gallopavo]
Length = 562
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|327261565|ref|XP_003215600.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Anolis
carolinensis]
Length = 634
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 169 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCNKEAAQ 228
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 229 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 288
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 289 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-- 346
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL + T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 347 KVKVLFVRNLANSVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 400
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
E++G+ +E+ A+P KR E
Sbjct: 401 GMNGKELEGENIEIVFAKPPDQKRKE 426
>gi|355722853|gb|AES07708.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Mustela
putorius furo]
Length = 698
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 260 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 319
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 320 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 379
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 380 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 437
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 438 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 491
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 492 EMNGKDLEGENIEIVFAKPPDQKRKE 517
>gi|189069313|dbj|BAG36345.1| unnamed protein product [Homo sapiens]
Length = 623
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|426353905|ref|XP_004044415.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 623
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|395534549|ref|XP_003769303.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Sarcophilus
harrisii]
Length = 605
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|126310303|ref|XP_001366745.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Monodelphis domestica]
Length = 623
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|228008396|ref|NP_001153145.1| heterogeneous nuclear ribonucleoprotein Q isoform 2 [Homo sapiens]
gi|332218415|ref|XP_003258351.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778173|ref|XP_003431697.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Canis lupus familiaris]
gi|358413804|ref|XP_003582661.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Bos taurus]
gi|359068807|ref|XP_003586521.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Bos taurus]
gi|426234732|ref|XP_004011346.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Ovis aries]
gi|119569008|gb|EAW48623.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_b [Homo sapiens]
gi|221042908|dbj|BAH13131.1| unnamed protein product [Homo sapiens]
gi|380783243|gb|AFE63497.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
Length = 464
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 60 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 119
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 120 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 179
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 237
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 238 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 291
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 292 EMNGKDLEGENIEIVFAKPPDQKRKE 317
>gi|147900289|ref|NP_001084953.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Xenopus
laevis]
gi|47122815|gb|AAH70529.1| MGC78820 protein [Xenopus laevis]
Length = 624
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 162 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 221
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 222 EAVKLYNNYEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 281
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD S
Sbjct: 282 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPD--PEVMS 339
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA+
Sbjct: 340 KVKVLFVRNLANTVTEEILEKAFGQFGKLERV------KKLKDYAFIHFDERVGAVKAMD 393
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ E++G+ +E+ A+P KR E
Sbjct: 394 EMNGKELEGENIEIVFAKPPDQKRKE 419
>gi|195055139|ref|XP_001994478.1| GH17270 [Drosophila grimshawi]
gi|193892241|gb|EDV91107.1| GH17270 [Drosophila grimshawi]
Length = 532
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 157/267 (58%), Gaps = 13/267 (4%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F ++E A
Sbjct: 162 VPGNGCEVFCGKIPKDMFEDELIPLFENCGVIWDLRLMMDPMTGTNRGYAFVTFTNREAA 221
Query: 159 KRAIDELCSKDF---KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
A+ +L DF KGK I ++S N+RLF+GN+PK+ E + PG+ +
Sbjct: 222 INAVRQL--NDFEIRKGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVI 279
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 280 IYSSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-- 337
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALK 335
S+VK LYV+NL ++ T +LKE F+++G+V +V +D+ FIH+ +R SA++
Sbjct: 338 TMSKVKVLYVRNLTQDVTEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVE 391
Query: 336 AIKDTEKYEIDGQVLEVALARPQTNKR 362
A++ E+ +EV+LA+P ++K+
Sbjct: 392 AMRGLNGKEVGASNIEVSLAKPPSDKK 418
>gi|62087776|dbj|BAD92335.1| synaptotagmin binding, cytoplasmic RNA interacting protein variant
[Homo sapiens]
Length = 534
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 130 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 189
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 190 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 249
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 250 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 307
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 308 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 361
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 362 EMNGKDLEGENIEIVFAKPPDQKRKE 387
>gi|228008291|ref|NP_006363.4| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Homo sapiens]
gi|302564259|ref|NP_001180774.1| heterogeneous nuclear ribonucleoprotein Q [Macaca mulatta]
gi|109071945|ref|XP_001089294.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 8
[Macaca mulatta]
gi|291396562|ref|XP_002714605.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Oryctolagus cuniculus]
gi|301775585|ref|XP_002923213.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Ailuropoda melanoleuca]
gi|332218419|ref|XP_003258353.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778171|ref|XP_532223.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Canis lupus familiaris]
gi|348578326|ref|XP_003474934.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Cavia porcellus]
gi|358413806|ref|XP_002705232.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Bos
taurus]
gi|359068810|ref|XP_002690247.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Bos
taurus]
gi|395737457|ref|XP_003776919.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Pongo abelii]
gi|397504636|ref|XP_003822890.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3 [Pan
paniscus]
gi|402867572|ref|XP_003897917.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Papio anubis]
gi|403261187|ref|XP_003923009.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Saimiri
boliviensis boliviensis]
gi|426234730|ref|XP_004011345.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Ovis aries]
gi|92090361|sp|O60506.2|HNRPQ_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Glycine- and tyrosine-rich
RNA-binding protein; Short=GRY-RBP; AltName:
Full=NS1-associated protein 1; AltName:
Full=Synaptotagmin-binding, cytoplasmic RNA-interacting
protein
gi|62897111|dbj|BAD96496.1| synaptotagmin binding, cytoplasmic RNA interacting protein variant
[Homo sapiens]
gi|119569014|gb|EAW48629.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_g [Homo sapiens]
gi|119569015|gb|EAW48630.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_g [Homo sapiens]
gi|261858370|dbj|BAI45707.1| synaptotagmin binding, cytoplasmic RNA interacting protein
[synthetic construct]
gi|281344763|gb|EFB20347.1| hypothetical protein PANDA_012313 [Ailuropoda melanoleuca]
gi|387539924|gb|AFJ70589.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|431838171|gb|ELK00103.1| Heterogeneous nuclear ribonucleoprotein Q [Pteropus alecto]
gi|440903331|gb|ELR54008.1| Heterogeneous nuclear ribonucleoprotein Q [Bos grunniens mutus]
Length = 623
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|351702127|gb|EHB05046.1| Heterogeneous nuclear ribonucleoprotein Q [Heterocephalus glaber]
Length = 623
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|426353899|ref|XP_004044412.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 464
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 60 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 119
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 120 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 179
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 237
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 238 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 291
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 292 EMNGKDLEGENIEIVFAKPPDQKRKE 317
>gi|6576815|dbj|BAA88342.1| SYNCRIP [Mus musculus]
gi|51329959|gb|AAH80309.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Mus
musculus]
gi|127797499|gb|AAH41148.2| Syncrip protein [Mus musculus]
gi|127801712|gb|AAI08364.2| Syncrip protein [Mus musculus]
Length = 561
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|354466426|ref|XP_003495675.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Cricetulus griseus]
gi|344238401|gb|EGV94504.1| Heterogeneous nuclear ribonucleoprotein Q [Cricetulus griseus]
Length = 562
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|383415175|gb|AFH30801.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|384944782|gb|AFI35996.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|410227736|gb|JAA11087.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410255524|gb|JAA15729.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410304910|gb|JAA31055.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
Length = 624
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|194216234|ref|XP_001915169.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Equus caballus]
Length = 623
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|37589144|gb|AAH58807.1| Syncrip protein, partial [Mus musculus]
Length = 635
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 231 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 290
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 291 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 350
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 351 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 408
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 409 KVKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 462
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 463 EMNGKDLEGENIEIVFAKPPDQKRKE 488
>gi|444729721|gb|ELW70128.1| Heterogeneous nuclear ribonucleoprotein Q [Tupaia chinensis]
Length = 659
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 194 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 253
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 254 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 313
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 314 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 371
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 372 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 425
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 426 EMNGKDLEGENIEIVFAKPPDQKRKE 451
>gi|29788787|ref|NP_062770.1| heterogeneous nuclear ribonucleoprotein Q isoform 2 [Mus musculus]
gi|26330244|dbj|BAC28852.1| unnamed protein product [Mus musculus]
gi|26346458|dbj|BAC36880.1| unnamed protein product [Mus musculus]
gi|148694591|gb|EDL26538.1| mCG16769, isoform CRA_d [Mus musculus]
Length = 562
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|198450702|ref|XP_002137140.1| GA27045, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|198131152|gb|EDY67698.1| GA27045, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 674
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 159/265 (60%), Gaps = 9/265 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F +++ A
Sbjct: 162 VPGNGCEVFCGKIPKDMYEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNRDAA 221
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + K GK ++ ++S N RLF+GN+PKS + E + + G+ + +
Sbjct: 222 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 281
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 282 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 339
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ T ++LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 340 SKVKVLYVRNLTQDVTEEKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 393
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ EI +EV+LA+P ++K+
Sbjct: 394 RGLNGKEIGASNIEVSLAKPPSDKK 418
>gi|344264671|ref|XP_003404415.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Loxodonta africana]
Length = 620
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 155 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 214
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 215 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 274
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 275 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 332
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 333 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 386
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 387 EMNGKDLEGENIEIVFAKPPDQKRKE 412
>gi|354466428|ref|XP_003495676.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Cricetulus griseus]
Length = 623
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|114145636|ref|NP_001041381.1| heterogeneous nuclear ribonucleoprotein Q [Rattus norvegicus]
gi|44888314|sp|Q7TP47.1|HNRPQ_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Liver regeneration-related
protein LRRG077; AltName: Full=Synaptotagmin-binding,
cytoplasmic RNA-interacting protein
gi|33086582|gb|AAP92603.1| Ab2-339 [Rattus norvegicus]
Length = 533
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 245
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 246 KVKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 299
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 300 EMNGKDLEGENIEIVFAKPPDQKRKE 325
>gi|33416526|gb|AAH55863.1| Syncrip protein, partial [Mus musculus]
Length = 667
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 202 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 261
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 262 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 321
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 322 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 379
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 380 KVKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 433
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 434 EMNGKDLEGENIEIVFAKPPDQKRKE 459
>gi|148694590|gb|EDL26537.1| mCG16769, isoform CRA_c [Mus musculus]
Length = 612
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 209 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 268
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 269 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 328
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 329 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 386
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 387 KVKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 440
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 441 EMNGKDLEGENIEIVFAKPPDQKRKE 466
>gi|127799069|gb|AAH50079.2| Synaptotagmin binding, cytoplasmic RNA interacting protein [Mus
musculus]
Length = 562
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLTMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|114145493|ref|NP_062640.2| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Mus musculus]
gi|44888326|sp|Q7TMK9.2|HNRPQ_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Glycine- and tyrosine-rich
RNA-binding protein; Short=GRY-RBP; AltName:
Full=NS1-associated protein 1; AltName:
Full=Synaptotagmin-binding, cytoplasmic RNA-interacting
protein; AltName: Full=pp68
gi|148694587|gb|EDL26534.1| mCG16769, isoform CRA_a [Mus musculus]
gi|148694589|gb|EDL26536.1| mCG16769, isoform CRA_a [Mus musculus]
Length = 623
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|194744098|ref|XP_001954532.1| GF16693 [Drosophila ananassae]
gi|190627569|gb|EDV43093.1| GF16693 [Drosophila ananassae]
Length = 710
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 158/265 (59%), Gaps = 9/265 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F ++E A
Sbjct: 162 VPGNGCEVFCGKIPKDMYEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNREAA 221
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + K GK ++ ++S N RLF+GN+PKS + E + + G+ + +
Sbjct: 222 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 281
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 282 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 339
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ + +LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 340 SKVKVLYVRNLTQDVSEDKLKEHFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 393
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ EI +EV+LA+P ++K+
Sbjct: 394 RGLNGKEIGASNIEVSLAKPPSDKK 418
>gi|195113079|ref|XP_002001097.1| GI10594 [Drosophila mojavensis]
gi|193917691|gb|EDW16558.1| GI10594 [Drosophila mojavensis]
Length = 721
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 158/265 (59%), Gaps = 9/265 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F ++E A
Sbjct: 218 VPGNGCEVFCGKIPKDMFEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNREAA 277
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + K GK ++ ++S N RLF+GN+PKS + E + + G+ + +
Sbjct: 278 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 337
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 338 SSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 395
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ T +LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 396 SKVKVLYVRNLTQDVTEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 449
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ E+ +EV+LA+P ++K+
Sbjct: 450 RGLNGKEVGASNIEVSLAKPPSDKK 474
>gi|442620153|ref|NP_001262779.1| syncrip, isoform M [Drosophila melanogaster]
gi|440217681|gb|AGB96159.1| syncrip, isoform M [Drosophila melanogaster]
Length = 699
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 156/265 (58%), Gaps = 9/265 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F ++E A
Sbjct: 193 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 252
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + GK I ++S N+RLF+GN+PK+ E + PG+ + +
Sbjct: 253 VNAVRQLNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIY 312
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 313 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 370
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ + +LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 371 SKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 424
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ EI +EV+LA+P ++K+
Sbjct: 425 RGLNGKEIGASNIEVSLAKPPSDKK 449
>gi|15986735|gb|AAL11726.1|AF408434_1 RRM RNA binding protein NSAP1 [Mus musculus]
Length = 558
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 93 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 152
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 153 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 212
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 213 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 270
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 271 KVKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 324
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 325 EMNGKDLEGENIEIVFAKPPDQKRKE 350
>gi|149018945|gb|EDL77586.1| rCG25340, isoform CRA_b [Rattus norvegicus]
gi|149018948|gb|EDL77589.1| rCG25340, isoform CRA_b [Rattus norvegicus]
Length = 458
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 60 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 119
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 120 EAVKRYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 179
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 237
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 238 KVKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 291
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 292 EMNGKDLEGENIEIVFAKPPDQKRKE 317
>gi|442620147|ref|NP_001262777.1| syncrip, isoform J [Drosophila melanogaster]
gi|440217678|gb|AGB96157.1| syncrip, isoform J [Drosophila melanogaster]
Length = 761
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 156/265 (58%), Gaps = 9/265 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F ++E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + GK I ++S N+RLF+GN+PK+ E + PG+ + +
Sbjct: 261 VNAVRQLNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIY 320
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 378
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ + +LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 379 SKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 432
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ EI +EV+LA+P ++K+
Sbjct: 433 RGLNGKEIGASNIEVSLAKPPSDKK 457
>gi|149018946|gb|EDL77587.1| rCG25340, isoform CRA_c [Rattus norvegicus]
gi|149018949|gb|EDL77590.1| rCG25340, isoform CRA_c [Rattus norvegicus]
Length = 462
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 158/275 (57%), Gaps = 9/275 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 60 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 119
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 120 EAVKRYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 179
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 237
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 238 KVKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 291
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGV 373
+ +++G+ +E+ A+P KR E AG+
Sbjct: 292 EMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAGM 326
>gi|291396564|ref|XP_002714606.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Oryctolagus cuniculus]
Length = 563
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 154/266 (57%), Gaps = 8/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPD-PEVMAK 336
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+K L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 337 VMKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 390
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 391 EMNGKDLEGENIEIVFAKPPDQKRKE 416
>gi|195390987|ref|XP_002054147.1| GJ22950 [Drosophila virilis]
gi|194152233|gb|EDW67667.1| GJ22950 [Drosophila virilis]
Length = 789
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 158/265 (59%), Gaps = 9/265 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F ++E A
Sbjct: 162 VPGNGCEVFCGKIPKDMFEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNREAA 221
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + K GK ++ ++S N RLF+GN+PKS + E + + G+ + +
Sbjct: 222 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 281
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 282 SSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 339
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ T +LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 340 SKVKVLYVRNLTQDVTEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 393
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ E+ +EV+LA+P ++K+
Sbjct: 394 RGLNGKEVGASNIEVSLAKPPSDKK 418
>gi|195498304|ref|XP_002096465.1| GE25686 [Drosophila yakuba]
gi|194182566|gb|EDW96177.1| GE25686 [Drosophila yakuba]
Length = 747
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 158/265 (59%), Gaps = 9/265 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F ++E A
Sbjct: 197 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 256
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + K GK ++ ++S N RLF+GN+PKS + E + + G+ + +
Sbjct: 257 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 316
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 317 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 374
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ + +LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 375 SKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 428
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ EI +EV+LA+P ++K+
Sbjct: 429 RGLNGKEIGASNIEVSLAKPPSDKK 453
>gi|390177341|ref|XP_003736348.1| GA27045, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388859003|gb|EIM52421.1| GA27045, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 483
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 159/265 (60%), Gaps = 9/265 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F +++ A
Sbjct: 162 VPGNGCEVFCGKIPKDMYEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNRDAA 221
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + K GK ++ ++S N RLF+GN+PKS + E + + G+ + +
Sbjct: 222 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 281
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 282 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 339
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ T ++LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 340 SKVKVLYVRNLTQDVTEEKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 393
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ EI +EV+LA+P ++K+
Sbjct: 394 RGLNGKEIGASNIEVSLAKPPSDKK 418
>gi|223648918|gb|ACN11217.1| Heterogeneous nuclear ribonucleoprotein Q [Salmo salar]
Length = 619
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 157/269 (58%), Gaps = 11/269 (4%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G+E+F+G +P+D E++L L E G ++++ L+ D SG ++G+AFV F +KE
Sbjct: 167 AQPTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEA 226
Query: 158 AKRAIDELCSKD--FKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
A A++ LC+ + GK I +S NNRLF+G++PKS T+++ + V G++ +
Sbjct: 227 ASEAVN-LCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFAKVTEGLNDVI 285
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
L P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD
Sbjct: 286 LYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVM 345
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALK 335
A +VK L+V+NL + T + L++ F + G++ +V +D+ F+H+ ER +A+K
Sbjct: 346 A--KVKVLFVRNLANSVTEEILEKSFSQFGKLERV------KKLKDYAFVHFDERDAAVK 397
Query: 336 AIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+ ++G+ +++ A+P KR E
Sbjct: 398 ALAQMNGKVLEGEHIDIVFAKPPDQKRKE 426
>gi|161078446|ref|NP_732558.2| syncrip, isoform C [Drosophila melanogaster]
gi|16197897|gb|AAL13706.1| GH28335p [Drosophila melanogaster]
gi|158030317|gb|AAN13833.2| syncrip, isoform C [Drosophila melanogaster]
gi|220945692|gb|ACL85389.1| CG17838-PC [synthetic construct]
gi|220955464|gb|ACL90275.1| CG17838-PC [synthetic construct]
Length = 529
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 156/265 (58%), Gaps = 9/265 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F ++E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + GK I ++S N+RLF+GN+PK+ E + PG+ + +
Sbjct: 219 VNAVRQLNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIY 278
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 336
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ + +LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 337 SKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 390
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ EI +EV+LA+P ++K+
Sbjct: 391 RGLNGKEIGASNIEVSLAKPPSDKK 415
>gi|195353891|ref|XP_002043435.1| GM23135 [Drosophila sechellia]
gi|194127576|gb|EDW49619.1| GM23135 [Drosophila sechellia]
Length = 745
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 158/265 (59%), Gaps = 9/265 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F ++E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + K GK ++ ++S N RLF+GN+PKS + E + + G+ + +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 378
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ + +LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 379 SKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 432
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ EI +EV+LA+P ++K+
Sbjct: 433 RGLNGKEIGASNIEVSLAKPPSDKK 457
>gi|26347007|dbj|BAC37152.1| unnamed protein product [Mus musculus]
Length = 491
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 87 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 146
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 147 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 206
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 207 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 264
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 265 KVKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 318
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A P KR E
Sbjct: 319 EMNGKDLEGENIEIVFANPPDKKRKE 344
>gi|442620155|ref|NP_001262780.1| syncrip, isoform N [Drosophila melanogaster]
gi|442620159|ref|NP_001262782.1| syncrip, isoform P [Drosophila melanogaster]
gi|440217682|gb|AGB96160.1| syncrip, isoform N [Drosophila melanogaster]
gi|440217684|gb|AGB96162.1| syncrip, isoform P [Drosophila melanogaster]
Length = 665
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 158/265 (59%), Gaps = 9/265 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F ++E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + K GK ++ ++S N RLF+GN+PKS + E + + G+ + +
Sbjct: 219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 336
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ + +LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 337 SKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 390
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ EI +EV+LA+P ++K+
Sbjct: 391 RGLNGKEIGASNIEVSLAKPPSDKK 415
>gi|189217790|ref|NP_001121335.1| heterogeneous nuclear ribonucleoprotein R [Xenopus laevis]
gi|171847308|gb|AAI61702.1| LOC100158425 protein [Xenopus laevis]
Length = 511
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 157/269 (58%), Gaps = 11/269 (4%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F +KE
Sbjct: 58 AQPGIGTEVFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCNKEA 117
Query: 158 AKRAIDELCS--KDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
A+ A+ +LC + GK I +S NNRLF+G++PK+ T++ + V G+ +
Sbjct: 118 AQEAV-KLCDNYEIRTGKHIGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLLDVI 176
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
L P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD
Sbjct: 177 LYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEIM 236
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALK 335
A +VK L+V+NL T + L++ F G++ +V +D+ F+H+ ER +A++
Sbjct: 237 A--KVKVLFVRNLSSTVTEEILEKAFSVFGKLERV------KKLKDYAFVHFDERDAAVR 288
Query: 336 AIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+ + E++G+ +E+ LA+P KR E
Sbjct: 289 AMDEMNGAELEGEEIEIVLAKPPDKKRKE 317
>gi|161078444|ref|NP_650913.2| syncrip, isoform B [Drosophila melanogaster]
gi|442620151|ref|NP_001097848.2| syncrip, isoform L [Drosophila melanogaster]
gi|158030316|gb|AAN13835.2| syncrip, isoform B [Drosophila melanogaster]
gi|440217680|gb|ABW08710.2| syncrip, isoform L [Drosophila melanogaster]
Length = 711
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 158/265 (59%), Gaps = 9/265 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F ++E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + K GK ++ ++S N RLF+GN+PKS + E + + G+ + +
Sbjct: 219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 336
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ + +LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 337 SKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 390
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ EI +EV+LA+P ++K+
Sbjct: 391 RGLNGKEIGASNIEVSLAKPPSDKK 415
>gi|24648522|ref|NP_732556.1| syncrip, isoform D [Drosophila melanogaster]
gi|23171809|gb|AAF55805.2| syncrip, isoform D [Drosophila melanogaster]
Length = 707
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 158/265 (59%), Gaps = 9/265 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F ++E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + K GK ++ ++S N RLF+GN+PKS + E + + G+ + +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 378
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ + +LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 379 SKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 432
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ EI +EV+LA+P ++K+
Sbjct: 433 RGLNGKEIGASNIEVSLAKPPSDKK 457
>gi|89272515|emb|CAJ81560.1| heterogeneous nuclear ribonucleoprotein R [Xenopus (Silurana)
tropicalis]
Length = 535
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 156/268 (58%), Gaps = 9/268 (3%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F +KE
Sbjct: 61 AQPGIGTEVFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCNKEA 120
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
A+ A+ + + + GK I +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 121 AQEAVKLCDNYEIRPGKHIGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 180
Query: 217 IKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 181 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEIMA 240
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ ER +A++A
Sbjct: 241 --KVKVLFVRNLSSTVTEEILEKAFSVFGKLERV------KKLKDYAFVHFDERDAAVRA 292
Query: 337 IKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ + E++G+ +E+ LA+P KR E
Sbjct: 293 MDEMNGTELEGEEIEIVLAKPPDKKRKE 320
>gi|442620161|ref|NP_001262783.1| syncrip, isoform Q [Drosophila melanogaster]
gi|440217685|gb|AGB96163.1| syncrip, isoform Q [Drosophila melanogaster]
Length = 761
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 158/265 (59%), Gaps = 9/265 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F ++E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + K GK ++ ++S N RLF+GN+PKS + E + + G+ + +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 378
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ + +LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 379 SKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 432
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ EI +EV+LA+P ++K+
Sbjct: 433 RGLNGKEIGASNIEVSLAKPPSDKK 457
>gi|301618964|ref|XP_002938875.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Xenopus
(Silurana) tropicalis]
Length = 532
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 156/268 (58%), Gaps = 9/268 (3%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F +KE
Sbjct: 58 AQPGIGTEVFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCNKEA 117
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
A+ A+ + + + GK I +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 118 AQEAVKLCDNYEIRPGKHIGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 177
Query: 217 IKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEIMA 237
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ ER +A++A
Sbjct: 238 --KVKVLFVRNLSSTVTEEILEKAFSVFGKLERV------KKLKDYAFVHFDERDAAVRA 289
Query: 337 IKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ + E++G+ +E+ LA+P KR E
Sbjct: 290 MDEMNGTELEGEEIEIVLAKPPDKKRKE 317
>gi|15809590|gb|AAK59705.1| hnRNP Q1 [Homo sapiens]
Length = 561
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NR F F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRSFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|194899678|ref|XP_001979385.1| GG24121 [Drosophila erecta]
gi|190651088|gb|EDV48343.1| GG24121 [Drosophila erecta]
Length = 666
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 158/265 (59%), Gaps = 9/265 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F ++E A
Sbjct: 164 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 223
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + K GK ++ ++S N RLF+GN+PKS + E + + G+ + +
Sbjct: 224 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 283
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 284 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 341
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ + +LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 342 SKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 395
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ EI +EV+LA+P ++K+
Sbjct: 396 RGLNGKEIGASNIEVSLAKPPSDKK 420
>gi|442620149|ref|NP_001262778.1| syncrip, isoform K [Drosophila melanogaster]
gi|440217679|gb|AGB96158.1| syncrip, isoform K [Drosophila melanogaster]
Length = 753
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 158/265 (59%), Gaps = 9/265 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F ++E A
Sbjct: 193 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 252
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + K GK ++ ++S N RLF+GN+PKS + E + + G+ + +
Sbjct: 253 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 312
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 313 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 370
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ + +LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 371 SKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 424
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ EI +EV+LA+P ++K+
Sbjct: 425 RGLNGKEIGASNIEVSLAKPPSDKK 449
>gi|24648528|ref|NP_732559.1| syncrip, isoform F [Drosophila melanogaster]
gi|23171812|gb|AAN13834.1| syncrip, isoform F [Drosophila melanogaster]
Length = 529
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 158/265 (59%), Gaps = 9/265 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F ++E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + K GK ++ ++S N RLF+GN+PKS + E + + G+ + +
Sbjct: 219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 336
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ + +LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 337 SKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 390
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ EI +EV+LA+P ++K+
Sbjct: 391 RGLNGKEIGASNIEVSLAKPPSDKK 415
>gi|161078453|ref|NP_001097849.1| syncrip, isoform H [Drosophila melanogaster]
gi|158030319|gb|ABW08711.1| syncrip, isoform H [Drosophila melanogaster]
Length = 534
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 158/265 (59%), Gaps = 9/265 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F ++E A
Sbjct: 164 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 223
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + K GK ++ ++S N RLF+GN+PKS + E + + G+ + +
Sbjct: 224 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 283
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 284 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 341
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ + +LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 342 SKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 395
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ EI +EV+LA+P ++K+
Sbjct: 396 RGLNGKEIGASNIEVSLAKPPSDKK 420
>gi|3037013|gb|AAC12926.1| Gry-rbp [Homo sapiens]
gi|15809586|gb|AAK59703.1| hnRNP Q3 [Homo sapiens]
Length = 623
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NR F F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRSFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|28317322|gb|AAO39657.1| AT01548p, partial [Drosophila melanogaster]
Length = 626
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 158/265 (59%), Gaps = 9/265 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F ++E A
Sbjct: 120 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 179
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + K GK ++ ++S N RLF+GN+PKS + E + + G+ + +
Sbjct: 180 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 239
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 240 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 297
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ + +LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 298 SKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 351
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ EI +EV+LA+P ++K+
Sbjct: 352 RGLNGKEIGASNIEVSLAKPPSDKK 376
>gi|24648520|ref|NP_732555.1| syncrip, isoform E [Drosophila melanogaster]
gi|23171808|gb|AAN13831.1| syncrip, isoform E [Drosophila melanogaster]
Length = 571
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 158/265 (59%), Gaps = 9/265 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F ++E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + K GK ++ ++S N RLF+GN+PKS + E + + G+ + +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 378
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ + +LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 379 SKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 432
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ EI +EV+LA+P ++K+
Sbjct: 433 RGLNGKEIGASNIEVSLAKPPSDKK 457
>gi|45551939|ref|NP_732557.2| syncrip, isoform A [Drosophila melanogaster]
gi|45446567|gb|AAN13832.2| syncrip, isoform A [Drosophila melanogaster]
Length = 563
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 158/265 (59%), Gaps = 9/265 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F ++E A
Sbjct: 193 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 252
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + K GK ++ ++S N RLF+GN+PKS + E + + G+ + +
Sbjct: 253 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 312
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 313 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 370
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ + +LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 371 SKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 424
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ EI +EV+LA+P ++K+
Sbjct: 425 RGLNGKEIGASNIEVSLAKPPSDKK 449
>gi|391324923|ref|XP_003736991.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Metaseiulus
occidentalis]
Length = 558
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 154/264 (58%), Gaps = 8/264 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF+G +PKD E++L L E G+++++ L+ D +G ++G+AF+ F K+ A+
Sbjct: 169 PAAGCEVFVGKIPKDMFEDELIPLFEKCGKIYDLRLMMDPLTGLNRGYAFITFCEKQGAQ 228
Query: 160 RAIDELCSKDF-KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A++ + + KGK I ++S N+RLF+GN+PK+ E + PG+ + +
Sbjct: 229 EAVNMFDNHEIRKGKHIGVTISINNHRLFVGNIPKNRGRDELLEEFTKHAPGLTDVIIYT 288
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +++++++ K+ G V WA+P+ PD + S
Sbjct: 289 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPD--SETMS 346
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK LYV+NL + T ++LKE+F+ G + V RD+ F+H+ +R AL+A++
Sbjct: 347 KVKVLYVRNLTQEVTEEKLKEVFEEFGGRVERV-----KKIRDYAFVHFEDREDALRALE 401
Query: 339 DTEKYEIDGQVLEVALARPQTNKR 362
E G +EV+LA+P ++K+
Sbjct: 402 KNNNREAGGAPMEVSLAKPPSDKK 425
>gi|195449649|ref|XP_002072163.1| GK22469 [Drosophila willistoni]
gi|194168248|gb|EDW83149.1| GK22469 [Drosophila willistoni]
Length = 731
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 158/265 (59%), Gaps = 9/265 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F +++ A
Sbjct: 162 VPGNGCEVFCGKIPKDMFEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNRDAA 221
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + K GK ++ ++S N RLF+GN+PKS + E + + G+ + +
Sbjct: 222 INAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 281
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 282 SSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 339
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ + +LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 340 SKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 393
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ EI +EV+LA+P ++K+
Sbjct: 394 RGLNGKEIGASNIEVSLAKPPSDKK 418
>gi|442620157|ref|NP_001262781.1| syncrip, isoform O [Drosophila melanogaster]
gi|440217683|gb|AGB96161.1| syncrip, isoform O [Drosophila melanogaster]
Length = 611
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 158/265 (59%), Gaps = 9/265 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F ++E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + K GK ++ ++S N RLF+GN+PKS + E + + G+ + +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 378
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ + +LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 379 SKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 432
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ EI +EV+LA+P ++K+
Sbjct: 433 RGLNGKEIGASNIEVSLAKPPSDKK 457
>gi|442620145|ref|NP_001262776.1| syncrip, isoform I [Drosophila melanogaster]
gi|440217677|gb|AGB96156.1| syncrip, isoform I [Drosophila melanogaster]
Length = 603
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 158/265 (59%), Gaps = 9/265 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F ++E A
Sbjct: 193 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 252
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + K GK ++ ++S N RLF+GN+PKS + E + + G+ + +
Sbjct: 253 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 312
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 313 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 370
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ + +LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 371 SKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 424
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ EI +EV+LA+P ++K+
Sbjct: 425 RGLNGKEIGASNIEVSLAKPPSDKK 449
>gi|442620163|ref|NP_001262784.1| syncrip, isoform R [Drosophila melanogaster]
gi|440217686|gb|AGB96164.1| syncrip, isoform R [Drosophila melanogaster]
Length = 569
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 158/265 (59%), Gaps = 9/265 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F ++E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + K GK ++ ++S N RLF+GN+PKS + E + + G+ + +
Sbjct: 219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 336
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ + +LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 337 SKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 390
Query: 338 KDTEKYEIDGQVLEVALARPQTNKR 362
+ EI +EV+LA+P ++K+
Sbjct: 391 RGLNGKEIGASNIEVSLAKPPSDKK 415
>gi|301775589|ref|XP_002923215.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 5
[Ailuropoda melanoleuca]
Length = 626
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 157/270 (58%), Gaps = 14/270 (5%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTE----KEFRKVIEDVGPGVDTI 214
A+ + + + GK I +S NNRLF+G++PKS T+ +EF KV + G+ +
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVT-GLWEGLTDV 276
Query: 215 ELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
L P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD
Sbjct: 277 ILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEV 336
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
A +VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+
Sbjct: 337 MA--KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAV 388
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+++ +++G+ +E+ A+P KR E
Sbjct: 389 KAMEEMNGKDLEGENIEIVFAKPPDQKRKE 418
>gi|340382530|ref|XP_003389772.1| PREDICTED: APOBEC1 complementation factor-like [Amphimedon
queenslandica]
Length = 599
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 141/256 (55%), Gaps = 9/256 (3%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G E+FIG +P+D E++L + E G V+E+ L+ D ++G+AFV + + AK+++
Sbjct: 31 GCEIFIGKIPRDCFEDELVPIVEKAGPVYEMRLMMDHSGSMNRGYAFVVYCKAQDAKKSV 90
Query: 163 DELCSKDF-KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
L + KG+TI MS N RLF+G +PK T++ R+ +E V GV I +
Sbjct: 91 KLLNEYEIRKGRTIGVCMSVDNCRLFVGGIPKCLTKENIREEMEKVTDGVADIIMYPAAS 150
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
S+NRGFAFV Y ++ A +R+K+ ++ +L + V WAEP+ D A VK
Sbjct: 151 DKSKNRGFAFVEYASHRAAAMARRKLINSRVRLWNHVVAVDWAEPELEVDEETMAT--VK 208
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTE 341
LYV+NL TT QL + F H V +V RD+ F+H+ RS AL A+K
Sbjct: 209 ILYVRNLMLTTTEAQLNKAFSHHAPVERV------KKIRDYAFVHFNSRSGALTAMKAMN 262
Query: 342 KYEIDGQVLEVALARP 357
+D V+EV LA+P
Sbjct: 263 GSVLDDAVIEVTLAKP 278
>gi|116283697|gb|AAH24283.1| SYNCRIP protein [Homo sapiens]
Length = 453
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 152/259 (58%), Gaps = 9/259 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 194 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 253
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 254 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 313
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 314 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 371
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 372 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 425
Query: 339 DTEKYEIDGQVLEVALARP 357
+ +++G+ +E+ A+P
Sbjct: 426 EMNGKDLEGENIEIVFAKP 444
>gi|33874520|gb|AAH15575.1| SYNCRIP protein, partial [Homo sapiens]
Length = 417
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 152/259 (58%), Gaps = 9/259 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARP 357
+ +++G+ +E+ A+P
Sbjct: 390 EMNGKDLEGENIEIVFAKP 408
>gi|47550699|ref|NP_999861.1| heterogeneous nuclear ribonucleoprotein Q [Danio rerio]
gi|34784487|gb|AAH56750.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Danio
rerio]
gi|46249711|gb|AAH68373.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Danio
rerio]
Length = 630
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 154/268 (57%), Gaps = 9/268 (3%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G+E+F+G +P+D E++L E G ++++ L+ D SG ++G+AF+ F +KE
Sbjct: 156 AQPTVGTEIFVGKIPRDLFEDELVPQFEKAGPIWDLRLMMDPLSGLNRGYAFLTFCTKEA 215
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
A+ A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 216 AQEAVKLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVIL 275
Query: 217 IKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 276 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIEDPDPEVMA 335
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
+VK L+V+NL + T + L++ F + G + +V +D+ F+H+ +R A+KA
Sbjct: 336 --KVKVLFVRNLANSVTEEILEKAFGQFGNLERV------KKLKDYAFVHFNDRDGAVKA 387
Query: 337 IKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ + E++G+ +E+ A+P KR E
Sbjct: 388 LTEMNGKELEGEHIEIVFAKPPDQKRKE 415
>gi|154757562|gb|AAI51724.1| SYNCRIP protein [Bos taurus]
Length = 456
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 152/259 (58%), Gaps = 9/259 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 198 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 257
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 258 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 317
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 318 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 375
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 376 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 429
Query: 339 DTEKYEIDGQVLEVALARP 357
+ +++G+ +E+ A+P
Sbjct: 430 EMNGKDLEGENIEIVFAKP 448
>gi|410911698|ref|XP_003969327.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Takifugu
rubripes]
Length = 629
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 157/266 (59%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ + +K+ A+
Sbjct: 159 PGIGTEVFVGKIPRDLYEDELVPLFESAGAIWDLRLMMDPLSGQNRGYAFITYCNKDDAQ 218
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
+A+ + + + GK + +S NNRLF+G++PK+ T + + V G+ + L +
Sbjct: 219 KAVKLCDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQEVILYQ 278
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P + PD A
Sbjct: 279 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPEVMA-- 336
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ F+H+ ER +A++A+
Sbjct: 337 KVKVLFVRNLATAVTEELLEKTFAQFGKLERV------KKLKDYAFVHFEERDAAVRAMD 390
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ E+ G+ +E+ LA+P KR E
Sbjct: 391 EMNGKEVGGEEIEIVLAKPPDKKRKE 416
>gi|47219493|emb|CAG10857.1| unnamed protein product [Tetraodon nigroviridis]
Length = 629
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 157/266 (59%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ + +K+ A+
Sbjct: 159 PGIGTEVFVGKIPRDLYEDELVPLFESAGAIWDLRLMMDPLSGQNRGYAFITYCNKDDAQ 218
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
+A+ + + + GK + +S NNRLF+G++PK+ T + + V G+ + L +
Sbjct: 219 KAVKLCDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQEVILYQ 278
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P + PD A
Sbjct: 279 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPEVMA-- 336
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ F+H+ ER +A++A+
Sbjct: 337 KVKVLFVRNLATAVTEELLEKTFAQFGKLERV------KKLKDYAFVHFEERDAAVRAMD 390
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ E+ G+ +E+ LA+P KR E
Sbjct: 391 EMNGKEVGGEEIEIVLAKPPDKKRKE 416
>gi|395857934|ref|XP_003801335.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Otolemur garnettii]
Length = 410
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 152/261 (58%), Gaps = 9/261 (3%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+ A+
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 70
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
+ + + GK I +S NNRLF+G++PKS T+++ + V G+ + L P
Sbjct: 71 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDK 130
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKAL 283
+NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A +VK L
Sbjct: 131 KKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA--KVKVL 188
Query: 284 YVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKY 343
+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 189 FVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEEMNGK 242
Query: 344 EIDGQVLEVALARPQTNKRTE 364
+++G+ +E+ A+P KR E
Sbjct: 243 DLEGENIEIVFAKPPDQKRKE 263
>gi|359338991|ref|NP_001240700.1| heterogeneous nuclear ribonucleoprotein Q isoform 7 [Homo sapiens]
gi|426353901|ref|XP_004044413.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
gi|441601143|ref|XP_004087662.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|119569007|gb|EAW48622.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_a [Homo sapiens]
Length = 410
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 152/261 (58%), Gaps = 9/261 (3%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+ A+
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 70
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
+ + + GK I +S NNRLF+G++PKS T+++ + V G+ + L P
Sbjct: 71 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDK 130
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKAL 283
+NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A +VK L
Sbjct: 131 KKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA--KVKVL 188
Query: 284 YVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKY 343
+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 189 FVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEEMNGK 242
Query: 344 EIDGQVLEVALARPQTNKRTE 364
+++G+ +E+ A+P KR E
Sbjct: 243 DLEGENIEIVFAKPPDQKRKE 263
>gi|426234734|ref|XP_004011347.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Ovis aries]
Length = 410
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 152/261 (58%), Gaps = 9/261 (3%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+ A+
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 70
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
+ + + GK I +S NNRLF+G++PKS T+++ + V G+ + L P
Sbjct: 71 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDK 130
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKAL 283
+NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A +VK L
Sbjct: 131 KKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA--KVKVL 188
Query: 284 YVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKY 343
+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 189 FVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEEMNGK 242
Query: 344 EIDGQVLEVALARPQTNKRTE 364
+++G+ +E+ A+P KR E
Sbjct: 243 DLEGENIEIVFAKPPDQKRKE 263
>gi|255069811|gb|ACU00255.1| AT04629p [Drosophila melanogaster]
Length = 489
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 154/260 (59%), Gaps = 9/260 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P +G EVF G +PKD E++L L E G ++++ L+ D +G ++G+AFV F ++E A
Sbjct: 229 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 288
Query: 159 KRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +L + + K GK ++ ++S N RLF+GN+PKS + E + + G+ + +
Sbjct: 289 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 348
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD
Sbjct: 349 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TM 406
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
S+VK LYV+NL ++ + +LKE F+++G+V +V +D+ FIH+ +R SA++A+
Sbjct: 407 SKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAM 460
Query: 338 KDTEKYEIDGQVLEVALARP 357
+ EI +EV+LA+P
Sbjct: 461 RGLNGKEIGASNIEVSLAKP 480
>gi|47213373|emb|CAF90992.1| unnamed protein product [Tetraodon nigroviridis]
Length = 611
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 150/258 (58%), Gaps = 14/258 (5%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
GSE+F+G LP+D E++L LCE G+++EV ++ D SG ++G+AFV F +K+ AK A+
Sbjct: 56 GSEIFVGKLPRDLFEDELVPLCEKFGQIYEVRMMMD-FSGNNRGYAFVTFSNKQEAKAAM 114
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+L + + + G+ + S N RLF+G +PK+ +E + V GV +++I P
Sbjct: 115 KQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEIMCEMRKVTEGV--VDVIVYPS 172
Query: 222 AP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
A S+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D A
Sbjct: 173 AADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEVEVDEDTMAT-- 230
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
VK LYV+NL TT + +++ F EV +V RD+ F+H+A+R A+ A+K+
Sbjct: 231 VKILYVRNLMLQTTEETIEKEFNSLKEVERV------KKIRDYAFVHFAQREDAIHAMKE 284
Query: 340 TEKYEIDGQVLEVALARP 357
+DG +EV LA+P
Sbjct: 285 LNGKVVDGSPIEVTLAKP 302
>gi|321468659|gb|EFX79643.1| hypothetical protein DAPPUDRAFT_319432 [Daphnia pulex]
Length = 695
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 153/262 (58%), Gaps = 9/262 (3%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
+G EVF G +P+D E++L L E G ++++ L+ D + ++G+AFV F + E A+ A
Sbjct: 173 NGCEVFCGKIPRDVYEDELIPLFEKCGTIWDLRLMMDPLTNLNRGYAFVTFTTTEAAQEA 232
Query: 162 IDELCSKDFKG-KTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDP 220
+++L + KG + ++ ++S N RLF+GN+PKS E + V G+ + + P
Sbjct: 233 VNQLNDLEMKGGRHLKINVSVPNLRLFVGNIPKSKGNVEIMEEFSKVTAGLAEVIIYSSP 292
Query: 221 QAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
+NRGF F+ Y ++ A +++++++ K+ G V WA+P+ PD+ S+V
Sbjct: 293 DDRRKNRGFCFLEYDSHKSASLAKRRLSTGRVKIFGCDIIVDWADPQEEPDND--TMSRV 350
Query: 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
K LYV+NL + T ++LKE F+ HG + +V +D+ F+H+ ER A++A+
Sbjct: 351 KVLYVRNLTQEFTEEKLKEAFEAHGPIQRV------KKIKDYAFVHFEERDDAVQAMDAL 404
Query: 341 EKYEIDGQVLEVALARPQTNKR 362
+ + G LEV+LA+P ++++
Sbjct: 405 NGHTLYGANLEVSLAKPPSDRK 426
>gi|348529965|ref|XP_003452482.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Oreochromis
niloticus]
Length = 631
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 156/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ + +K+ A+
Sbjct: 161 PGSGTEVFVGKIPRDLYEDELVPLFESAGPIWDLRLMMDPLSGQNRGYAFITYCNKDDAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
+A+ + + + GK + +S NNRLF+G++PK+ T + + V G+ + L
Sbjct: 221 KAVKLCDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQEVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P + PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+ L T + L++ F + G++ +V +D+ F+H+ ER +A+KA++
Sbjct: 339 KVKVLFVRKLATAVTEELLEKTFSQFGKLERV------KKLKDYAFVHFEERDAAVKAME 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ E+ G+ +E+ LA+P KR E
Sbjct: 393 EMNGKELGGEEIEIVLAKPPDKKRKE 418
>gi|195997511|ref|XP_002108624.1| hypothetical protein TRIADDRAFT_689 [Trichoplax adhaerens]
gi|190589400|gb|EDV29422.1| hypothetical protein TRIADDRAFT_689, partial [Trichoplax adhaerens]
Length = 299
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 100/262 (38%), Positives = 149/262 (56%), Gaps = 15/262 (5%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVFIG +P+D E++L + E IG ++EV L+ D SG ++G+AFV ++SK A+
Sbjct: 43 PPRGCEVFIGKIPRDLFEDELVPVFEKIGPIYEVRLMMDF-SGNNRGYAFVVYQSKSAAR 101
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
+ I +L + + + G+ I S N RLFIG +PK+ +E R + + V +++I
Sbjct: 102 QCIKQLNNYEIRQGRMIGVCSSVDNCRLFIGGIPKTIKREEIRSEMAKITEHV--VDVIV 159
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQK-MTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
P A ++NRGFAFV Y N+ A +R+K M + N +L G+ V WAEP+ D
Sbjct: 160 YPSASDKTKNRGFAFVEYTNHRAAAMARRKLMNNNNVELWGHKIAVDWAEPEIEVDEE-- 217
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALK 335
QVK +YV+NL +TT + L+E+FQ V +V RD+ FIH+ + A
Sbjct: 218 IMDQVKIVYVRNLLLSTTEESLREIFQSIARVERV------KKIRDYAFIHFTSKEDAHM 271
Query: 336 AIKDTEKYEIDGQVLEVALARP 357
AI IDG +EV LA+P
Sbjct: 272 AITLKNGQIIDGSTVEVTLAKP 293
>gi|432944515|ref|XP_004083418.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like, partial
[Oryzias latipes]
Length = 469
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 153/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D S ++G+AFV F +KE A+
Sbjct: 165 PTVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLSSLNRGYAFVTFCAKEAAQ 224
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G++ + L
Sbjct: 225 EAVKLCNNYEIRPGKHIGACISVANNRLFVGSIPKSKTKEQIVEEFSKVTDGLNDVILYH 284
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ + ++ A +R+++ S K+ G TV WA+P PD A
Sbjct: 285 QPDDKKKNRGFCFLEFEDHKTAAQARRRLMSGKVKVWGILVTVEWADPIEDPDPEVMA-- 342
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL + T + L++ F G++ +V +D+ FIH+ ER A+KA+
Sbjct: 343 KVKVLFVRNLANSVTEEILEKSFSAFGKLERV------KKLKDYAFIHFEEREGAVKALD 396
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ E++G+ +E+ A+P KR E
Sbjct: 397 EMNGKELEGEPIEIVFAKPPDQKRKE 422
>gi|144952800|gb|ABP04054.1| RNA-binding protein [Pinctada fucata]
Length = 624
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/270 (36%), Positives = 156/270 (57%), Gaps = 17/270 (6%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
P GSEVF G +PKD E++L L E G+++++ L+ D +G ++G+ F+ F K A
Sbjct: 158 PSGSEVFCGKIPKDVFEDELIPLFEKCGKIWDLRLMMDPMTGFNRGYCFITFCDKPGALE 217
Query: 161 AIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTE----KEFRKVIEDVGPGVDTIE 215
A+ +L + K GK+I+ ++S N RLF+GN+PKS ++ +EF K ED+ D I
Sbjct: 218 AVKQLDNYQIKPGKSIKVNISVANQRLFVGNIPKSKSKDEIMEEFSKKTEDL---TDVII 274
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ +NRGFAF+ Y ++ A +++K++S K+ G V WA+P PD
Sbjct: 275 YRSAEKENQKNRGFAFLEYESHKAASTAKRKLSSGRTKVWGCDVIVDWADPIDDPDSD-- 332
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALK 335
S+VK LYV+NL + T LKE F +G+V +V +D+GFIH+ ER A+K
Sbjct: 333 TMSKVKVLYVRNLTSDVTEDTLKEKFGEYGKVERV------KKIKDYGFIHFEERDDAVK 386
Query: 336 AIKDTEKYEIDGQVLEVALARPQT-NKRTE 364
A++ ++ +EV+LA+P + NK+ E
Sbjct: 387 AMEGMNGQKLGKLEMEVSLAKPPSENKKKE 416
>gi|345320008|ref|XP_001511604.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R
[Ornithorhynchus anatinus]
Length = 479
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L + G ++++ L+ D SG+++G+AF+ F K+ A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFDKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ E++G+ +E+ LA+P KR E
Sbjct: 393 EMNGKELEGEEIEIVLAKPPDKKRKE 418
>gi|260791540|ref|XP_002590787.1| hypothetical protein BRAFLDRAFT_218629 [Branchiostoma floridae]
gi|229275983|gb|EEN46798.1| hypothetical protein BRAFLDRAFT_218629 [Branchiostoma floridae]
Length = 637
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 160/274 (58%), Gaps = 15/274 (5%)
Query: 98 ALPPHG-----SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAF 152
A+PP ++VF+ +P+D E++L L E G +F++ L+ D SG+++G+AFV +
Sbjct: 143 AMPPPCLVLLLAQVFVSKIPRDMFEDELIPLFEKPGPIFDLRLMMDPLSGQNRGYAFVTY 202
Query: 153 RSKEVAKRAIDELCSKDF-KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
+KE A+ A+ +L + + KG+ + +S NNRLF+G++PK+ +++E V G+
Sbjct: 203 TTKESAQDAVKQLDNYEIRKGRWLGVCISVANNRLFVGSIPKNKSKQEIFDEFGKVTNGL 262
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGN-TPTVSWAEPKSTP 270
+ + P+ +NRGFAF+ Y ++ A +R+++ S K+ GN T TV WA+P P
Sbjct: 263 KDVIIYYMPEDKRKNRGFAFLEYLSHKEASLARRRLMSGRIKVWGNITVTVDWADPIEEP 322
Query: 271 DHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAER 330
D S+VK LYV+NL + ++ F+ +G V +V +D+ F+H+ R
Sbjct: 323 DDE--VMSKVKVLYVRNLAVEAAEEIIQAKFEPYGTVERV------KKIKDYAFVHFENR 374
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+KA++D E++G +E++LA+P + K+ E
Sbjct: 375 EDAIKAMEDLNGKELEGSAMEISLAKPPSEKKKE 408
>gi|291222526|ref|XP_002731265.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Saccoglossus kowalevskii]
Length = 648
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 156/255 (61%), Gaps = 10/255 (3%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
+VF+G +P+D E+++ L E G+++++ L+ D SG ++G+AFV F +E A+ A+ +
Sbjct: 175 QVFVGKIPRDMFEDEIIPLFEKCGKIWDLRLMMDPLSGLNRGYAFVTFCDREGAQEAVKQ 234
Query: 165 LCSKDF-KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
L + + KGK + +S N+RLF+G++PK+ ++ E + G+ + + P+
Sbjct: 235 LDNHEIRKGKHLGVCISVANHRLFVGSIPKTKSKDEILEEFNKHVGGLTDVIIYHMPEDR 294
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTP-TVSWAEPKSTPDHSAAAASQVKA 282
+NRGFAF+ + ++ A +R+++ S K+ GN+ TV WA+P+ PD A +VK
Sbjct: 295 KKNRGFAFLHFESHKAASLARRRLMSGRIKVWGNSNVTVDWADPQEEPDEETMA--KVKV 352
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEK 342
LYV+NL + ++LKE FQ G V +V +D+ F+H+ ER +A+KA+++
Sbjct: 353 LYVRNLTPDAEEEKLKEAFQAFGTVERV------KKLKDYCFVHFEERDAAVKAMEELNG 406
Query: 343 YEIDGQVLEVALARP 357
E++G V++++LA+P
Sbjct: 407 KEVEGSVVDISLAKP 421
>gi|3694986|gb|AAC62511.1| RRM RNA binding protein GRY-RBP [Mus musculus]
Length = 625
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 153/269 (56%), Gaps = 12/269 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGES---KGFAFVAFRSKE 156
P G+E+F+G +P+D E++L L E G ++++ L+ D +G + +G+AFV F +KE
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLTGLNRGYAFVTFCTKE 217
Query: 157 VAKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
A+ A + + + GK I +S NNRLF+G++PKS T+++ + V G+ +
Sbjct: 218 AAQEAAKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVI 277
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
L P +NRGF F Y ++ A +R+++ S K+ GN TV WA+P PD
Sbjct: 278 LYHQPDDKKKNRGFCFQEYEDHKAAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVM 337
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALK 335
A +VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+K
Sbjct: 338 A--KVKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVK 389
Query: 336 AIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+++ +++G+ +E+ A+P KR E
Sbjct: 390 AMEEMNGKDLEGENIEIVFAKPPDQKRKE 418
>gi|198418309|ref|XP_002123977.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein R
[Ciona intestinalis]
Length = 581
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 161/292 (55%), Gaps = 12/292 (4%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G +VF+G +P+ E++L L E G V++ L+ D SG+++G+ FV + +KE
Sbjct: 156 AEPGTGCQVFVGRIPRFVFEDELVPLLEEAGVVWDFRLMMDPMSGQNRGYGFVTYTNKEA 215
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
A + L + + + K + +S++N RLF+G++PK+ T+ E + + + G+ + +
Sbjct: 216 ATECVKMLDNYEIRPKKFLGVCVSQSNCRLFVGSIPKTKTKDEIFEEFDGITQGLKDVII 275
Query: 217 IKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
+ +NRGF F+ Y ++ A +R++++S K NT +V WA+P P S
Sbjct: 276 YLQTEDKMKNRGFCFLEYTDHKAASQARRRLSSVKVKAFNNTVSVDWADPVEEP--SDEI 333
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
S+VK LY+KNL T + + F +GEV +V +D+ F+H+ ER +A+KA
Sbjct: 334 MSKVKVLYIKNLSMKATEEIVMATFSAYGEVERV------KKIKDYAFVHFKERDNAMKA 387
Query: 337 IKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAG 388
+++ ++G+ +E++LA+P K+ E H G+ GYG+ AG
Sbjct: 388 LEELNGLNLEGEAIEISLAKPVDKKKKERQMERKMMTHAYGM---GYGNRAG 436
>gi|26454828|gb|AAH40844.1| SYNCRIP protein [Homo sapiens]
Length = 410
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 151/261 (57%), Gaps = 9/261 (3%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+ A+
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 70
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
+ + + GK I +S NNRLF+G++PKS T+++ + V G+ + L P
Sbjct: 71 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDK 130
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKAL 283
+NRG F+ Y ++ A +R+++ S K+ GN TV WA+P PD A +VK L
Sbjct: 131 KKNRGSCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA--KVKVL 188
Query: 284 YVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKY 343
+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 189 FVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEEMNGK 242
Query: 344 EIDGQVLEVALARPQTNKRTE 364
+++G+ +E+ A+P KR E
Sbjct: 243 DLEGENIEIVFAKPPDQKRKE 263
>gi|223648358|gb|ACN10937.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 635
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 153/269 (56%), Gaps = 11/269 (4%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F K+
Sbjct: 162 AQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDA 221
Query: 158 AKRAIDELCS--KDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
A A+ +LC + GK + +S NNRLF+G++PK+ T + + V G+ +
Sbjct: 222 AAEAV-KLCDNYEIRSGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQEVI 280
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
L P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P + PD
Sbjct: 281 LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPDVM 340
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALK 335
A +VK L+V+ L T + L++ F G++ +V +D+ F+H+ +R +A+K
Sbjct: 341 A--KVKVLFVRKLATPVTEELLEKTFSAFGKLERV------KKLKDYAFVHFEDRDAAVK 392
Query: 336 AIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+ + E+ G+ +E+ LA+P KR E
Sbjct: 393 AMSEMNGKELGGEEIEIVLAKPPDKKRKE 421
>gi|223648796|gb|ACN11156.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 633
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 157/270 (58%), Gaps = 12/270 (4%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKD-SGESKGFAFVAFRSKE 156
A P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F +K+
Sbjct: 158 AQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLLSGQNRGYAFITFCNKD 217
Query: 157 VAKRAIDELCS--KDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTI 214
A A+ +LC + GK + +S NNRLF+G++PK+ T + + V G+ +
Sbjct: 218 AALEAV-KLCDNYEIRSGKYLGVCISVANNRLFVGSIPKNKTRESILEDFSKVTEGLMEV 276
Query: 215 ELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
L P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD
Sbjct: 277 ILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVDEPDPEI 336
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
A +VK L+V+NL T + L++ F + G++ +V +D+ F+H+ +R +A+
Sbjct: 337 MA--KVKVLFVRNLATPVTEELLEKTFSQFGKLERV------KKLKDYAFVHFEDRDAAV 388
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+++ E++G+ +E+ LA+P KR E
Sbjct: 389 KAMQEMNCKELEGEEIEIVLAKPPDKKRKE 418
>gi|324504723|gb|ADY42035.1| Heterogeneous nuclear ribonucleoprotein R [Ascaris suum]
Length = 619
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 150/263 (57%), Gaps = 11/263 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G E++IG +P + E+ L L E +G+++++ L+ D +G+++G+AF+ F K A A
Sbjct: 197 GHEIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAA 256
Query: 163 DELCSKD-FKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+ + GK ++ ++S N RLFIGN+PKS +++E ++ GV + P
Sbjct: 257 KKFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVVDCIIYTSPD 316
Query: 222 APS--RNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
A + +NRGF F+ + ++ A +++K+ + + + V WAE + PD S+
Sbjct: 317 AGANRKNRGFCFLDFCDHKAASDAKRKIHAGKLRPWNSDLVVDWAEQQEEPDEE--TMSK 374
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
VK LYV+NL E T +QLKE+F HGEV + RD+ FIH+ ER ALKA++
Sbjct: 375 VKVLYVRNLKEAVTEEQLKEMFAAHGEVERA------KKIRDYAFIHFKEREPALKAMEA 428
Query: 340 TEKYEIDGQVLEVALARPQTNKR 362
++G +E++LA+PQ +K+
Sbjct: 429 LNGTVLEGIAIEISLAKPQGDKK 451
>gi|432881549|ref|XP_004073835.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Oryzias
latipes]
Length = 633
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ + +K+ A+
Sbjct: 163 PGIGTEVFVGKIPRDLYEDELVPLFESAGPIWDLRLMMDPLSGQNRGYAFITYCNKDDAQ 222
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
+A+ + + + GK + +S NNRLF+G++PK+ T + + V G+ + L
Sbjct: 223 KAVKLCDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQDVILYH 282
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P + PD A
Sbjct: 283 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPEVMA-- 340
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+ L T + L++ F + G++ +V +D+ F+H+ ER +A++A++
Sbjct: 341 KVKVLFVRKLATAVTEELLEKTFSQFGKLERV------KKLKDYAFVHFEERDAAVQAME 394
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
E+ G+ +E+ LA+P KR E
Sbjct: 395 GMNGKELGGEEIEIVLAKPPDKKRKE 420
>gi|156399642|ref|XP_001638610.1| predicted protein [Nematostella vectensis]
gi|156225732|gb|EDO46547.1| predicted protein [Nematostella vectensis]
Length = 411
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 146/260 (56%), Gaps = 10/260 (3%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+PP G EVF+G +P+D E++L + E G ++EV L+ D + G+++G+AFV + SK+ A
Sbjct: 52 IPPRGCEVFVGKIPRDLYEDELVPVFETAGPIYEVRLMMDFN-GQNRGYAFVVYTSKDDA 110
Query: 159 KRAIDELCSKDF-KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
KR + L + + KGK I S N RLF+G +PK + E + V V + +
Sbjct: 111 KRCVKTLNNYEIRKGKCIGVCSSVDNCRLFVGGIPKKVKKDEIMAEVSKVTDNVVDVIVY 170
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
Q ++NRGFAFV Y ++ A +R+K+ + +L G+ V WAEP+ D
Sbjct: 171 PSAQDKTKNRGFAFVEYISHRDAAMARRKLMTGKIQLWGHQIAVDWAEPEQEVDQE--IM 228
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
QVK LY +NL +TT + +++ F + GEV +V +D+ FIH+ + A A+
Sbjct: 229 DQVKVLYARNLLLSTTEETIEQAFSKFGEVERV------KKIKDYCFIHFRTKEQARDAM 282
Query: 338 KDTEKYEIDGQVLEVALARP 357
+ + E+DG +EV LA+P
Sbjct: 283 EAMNETELDGNEIEVTLAKP 302
>gi|34393486|dbj|BAC83046.1| putative RRM RNA binding protein NSAP1 [Oryza sativa Japonica
Group]
Length = 613
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 158/270 (58%), Gaps = 15/270 (5%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+GGL +DA E+D+R + GE+ EV ++ + +G++KG+ FV +R AK+AI E
Sbjct: 237 EVFVGGLHRDAKEDDVRAVFAKAGEITEVRMIMNPLAGKNKGYCFVRYRHAAQAKKAIAE 296
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAP 223
+ GK R ++ N+R+F+GN+ K W +++ K ++ +G +D++ L D P
Sbjct: 297 FGNVKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSNNP 356
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKAL 283
NRGFAF+ + A + +K++ N G V+WAEP + PD QVK++
Sbjct: 357 VCNRGFAFLELETSRDARMAYKKLSQKNAFGKGLNIRVAWAEPLNDPDEKDM---QVKSI 413
Query: 284 YVKNLPENTTTKQLKELFQRHGEVTKVV----TPPGKSGKRDFGFIHYAERSSALKAIK- 338
+V +P + QLKE+F++HG++ VV P K +RDF FI+Y R +A+ ++
Sbjct: 414 FVDGIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAK--RRDFAFINYITREAAISCLES 471
Query: 339 -DTEKYEIDGQV--LEVALARP-QTNKRTE 364
D E++ +G ++V+LA+P Q +K+T+
Sbjct: 472 FDKEEFSKNGSKVNIKVSLAKPAQQSKQTK 501
>gi|170592443|ref|XP_001900974.1| hnRNP-R, Q splicing factor family protein [Brugia malayi]
gi|158591041|gb|EDP29654.1| hnRNP-R, Q splicing factor family protein [Brugia malayi]
Length = 709
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 151/263 (57%), Gaps = 11/263 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G E++IG +PK+ E+ L L E +G+++++ L+ D +G ++G+AF+ + K A A
Sbjct: 292 GHEIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTAAYEAA 351
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+ + GK ++ ++S N RLFIGN+PKS +++E ++ GV + P
Sbjct: 352 KKFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPD 411
Query: 222 A--PSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
A +NRGF F+ + ++ A +++K+ + + + V WAE + PD A +
Sbjct: 412 AGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVDWAEQQEEPDEETMA--K 469
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
VK LYV+NL E T +QLKE+F +GEV + RD+ FIH+ ER A+KA++
Sbjct: 470 VKVLYVRNLKEAVTEEQLKEMFSAYGEVDRA------KKIRDYAFIHFMEREPAIKAMEA 523
Query: 340 TEKYEIDGQVLEVALARPQTNKR 362
E++G ++++LA+PQ++K+
Sbjct: 524 LNGTELEGIAIDISLAKPQSDKK 546
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 34/164 (20%)
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
+ + ++IG +PK E + ED+G D + L+ DP RNRG+AF+ Y + A
Sbjct: 291 SGHEIYIGKIPKEVYEDTLITLFEDMGKIWD-LRLMMDPLT-GRNRGYAFLTYCDKTAAY 348
Query: 242 YSRQK------MTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTK 295
+ +K M N K++ VS A + L++ N+P++ + +
Sbjct: 349 EAAKKFDGYEIMPGKNLKVN-----VSVANTR---------------LFIGNIPKSKSKE 388
Query: 296 QLKELFQRHGE-VTKVVT----PPGKSGK-RDFGFIHYAERSSA 333
++ F+ H E VT + G+S K R F F+ + + +A
Sbjct: 389 EILAEFKEHTEGVTDCIIYSSPDAGESRKNRGFCFLDFCDHKTA 432
>gi|324505135|gb|ADY42212.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 609
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 149/263 (56%), Gaps = 11/263 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G E++IG +P + E+ L L E +G+++++ L+ D +G+++G+AF+ F K A A
Sbjct: 185 GHEIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAA 244
Query: 163 DELCSKD-FKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+ + GK ++ ++S N RLFIGN+PKS +++E ++ GV + P
Sbjct: 245 KKFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPD 304
Query: 222 A--PSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
A +NRGF F+ + ++ A +++K+ + + V WAE + PD A +
Sbjct: 305 AGESRKNRGFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWAEQQEEPDEETMA--K 362
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
VK LYV+NL E T +QLKE+F HGEV V +D+ FIH+ ER A+KA++
Sbjct: 363 VKVLYVRNLKEAVTEEQLKEMFSAHGEVDHV------KKIKDYAFIHFNEREPAVKAMEA 416
Query: 340 TEKYEIDGQVLEVALARPQTNKR 362
++G +E++LA+PQ++K+
Sbjct: 417 LNGTVLEGVPIEISLAKPQSDKK 439
>gi|324511732|gb|ADY44878.1| Heterogeneous nuclear ribonucleoprotein Q, partial [Ascaris suum]
Length = 561
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 149/263 (56%), Gaps = 11/263 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G E++IG +P + E+ L L E +G+++++ L+ D +G+++G+AF+ F K A A
Sbjct: 197 GHEIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAA 256
Query: 163 DELCSKD-FKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+ + GK ++ ++S N RLFIGN+PKS +++E ++ GV + P
Sbjct: 257 KKFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPD 316
Query: 222 A--PSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
A +NRGF F+ + ++ A +++K+ + + V WAE + PD A +
Sbjct: 317 AGESRKNRGFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWAEQQEEPDEETMA--K 374
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
VK LYV+NL E T +QLKE+F HGEV V +D+ FIH+ ER A+KA++
Sbjct: 375 VKVLYVRNLKEAVTEEQLKEMFSAHGEVDHV------KKIKDYAFIHFNEREPAVKAMEA 428
Query: 340 TEKYEIDGQVLEVALARPQTNKR 362
++G +E++LA+PQ++K+
Sbjct: 429 LNGTVLEGVPIEISLAKPQSDKK 451
>gi|324502274|gb|ADY41001.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324504680|gb|ADY42019.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324508493|gb|ADY43584.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324508971|gb|ADY43783.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 621
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 149/263 (56%), Gaps = 11/263 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G E++IG +P + E+ L L E +G+++++ L+ D +G+++G+AF+ F K A A
Sbjct: 197 GHEIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAA 256
Query: 163 DELCSKD-FKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+ + GK ++ ++S N RLFIGN+PKS +++E ++ GV + P
Sbjct: 257 KKFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPD 316
Query: 222 A--PSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
A +NRGF F+ + ++ A +++K+ + + V WAE + PD A +
Sbjct: 317 AGESRKNRGFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWAEQQEEPDEETMA--K 374
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
VK LYV+NL E T +QLKE+F HGEV V +D+ FIH+ ER A+KA++
Sbjct: 375 VKVLYVRNLKEAVTEEQLKEMFSAHGEVDHV------KKIKDYAFIHFNEREPAVKAMEA 428
Query: 340 TEKYEIDGQVLEVALARPQTNKR 362
++G +E++LA+PQ++K+
Sbjct: 429 LNGTVLEGVPIEISLAKPQSDKK 451
>gi|356561166|ref|XP_003548856.1| PREDICTED: uncharacterized protein LOC100819035 [Glycine max]
Length = 953
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 158/277 (57%), Gaps = 16/277 (5%)
Query: 74 AVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEV 133
A+E+E + +I+ K K + E+F+GGL +DA+EEDLR + + IGE+ EV
Sbjct: 437 ALEEEHRELEAIANQRKIKKEH---------EIFVGGLDRDATEEDLRKVFQRIGEIVEV 487
Query: 134 GLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPK 193
L K+ + ++KG+AFV F +KE AK+A+ E+ + GK + SE N+ LF+GN+
Sbjct: 488 RLHKNSSTNKNKGYAFVKFANKENAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICN 547
Query: 194 SWTEKEFRKVIEDVG-PGVDTIELIKDPQAPSRNRGFAFVLY--YNNACADYSRQKMTSA 250
+WT++ ++ ++D G GV++I L+ D Q +RGFAF+ + + +A + R +
Sbjct: 548 TWTKEAIKQKLKDYGIEGVESITLVPDVQHEGLSRGFAFLEFSCHADAMLAFKRLQKPDV 607
Query: 251 NFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV 310
F T V++AEP PD A QVK++++ LP + ++ELF+ +GE+ ++
Sbjct: 608 IFGHAERTAKVAFAEPIHEPDPEIMA--QVKSVFINGLPPHWDEDHVRELFKAYGEIVRI 665
Query: 311 VTPPGKSG--KRDFGFIHYAERSSALKAIKDTEKYEI 345
V S ++D+GF+ ++ +A+ + K E+
Sbjct: 666 VLARNMSSAKRKDYGFVDFSTHEAAVACVDGVNKSEL 702
>gi|223649064|gb|ACN11290.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 631
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 152/267 (56%), Gaps = 11/267 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F K+ A
Sbjct: 163 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAA 222
Query: 160 RAIDELCS--KDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
A+ +LC + GK + +S NNRLF+G++PK+ T + + V G+ + L
Sbjct: 223 EAV-KLCDNYEIRSGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQEVILY 281
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P + PD A
Sbjct: 282 HQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPDVMA- 340
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
+VK L+V+ L T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 341 -KVKVLFVRKLAIPVTEELLEKTFSAFGKLERV------KKLKDYAFVHFEDRDAAVKAM 393
Query: 338 KDTEKYEIDGQVLEVALARPQTNKRTE 364
+ E+ G+ +E+ LA+P KR E
Sbjct: 394 AEMNGKELGGEGIEIVLAKPPDKKRKE 420
>gi|344274538|ref|XP_003409072.1| PREDICTED: APOBEC1 complementation factor [Loxodonta africana]
Length = 595
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/311 (33%), Positives = 172/311 (55%), Gaps = 23/311 (7%)
Query: 59 DQSPGANGSHINTEDAVEDEDKRT--ASISEDEKEKH-----DQLLALPPHGSEVFIGGL 111
+Q G S E A+ +RT + + E+ + K+ D A P G E+FIG L
Sbjct: 4 NQKSGDGLSGTQKEAALRALIQRTGYSLVQENGQRKYGGPPPDWEAAPPERGCEIFIGKL 63
Query: 112 PKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFK 171
P+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+ AK AI +L + + +
Sbjct: 64 PRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAKNAIKQLNNYEIR 122
Query: 172 -GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP--SRNRG 228
G+ + S N RLF+G +PK+ +E ++ V GV +++I P A ++NRG
Sbjct: 123 NGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDVIVYPSAADKTKNRG 180
Query: 229 FAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNL 288
FAFV Y ++ A +R+K+ +L G+ V WAEP+ D S VK LYV+NL
Sbjct: 181 FAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED--TMSSVKILYVRNL 238
Query: 289 PENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEID 346
+T+ + +++ F + G V +V RD+ F+H++ R A+KA+K +D
Sbjct: 239 MLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVKAMKALNGKVLD 292
Query: 347 GQVLEVALARP 357
G +EV LA+P
Sbjct: 293 GSPIEVTLAKP 303
>gi|393911205|gb|EJD76209.1| HnRNP-R [Loa loa]
Length = 729
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 151/263 (57%), Gaps = 11/263 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G E++IG +PK+ E+ L L E +G+++++ L+ D +G ++G+AF+ + K A A
Sbjct: 312 GHEIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTSAYEAA 371
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+ + GK ++ ++S N RLFIGN+PKS +++E ++ GV + P
Sbjct: 372 KKFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPD 431
Query: 222 A--PSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
A +NRGF F+ + ++ A +++K+ + + + V WAE + PD A +
Sbjct: 432 AGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVDWAEQQEEPDEETMA--K 489
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
VK LYV+NL E T +QLKE+F +GEV + RD+ FIH+ ER A+KA++
Sbjct: 490 VKVLYVRNLKEAVTEEQLKEMFSAYGEVDRA------KKIRDYAFIHFMEREPAIKAMEA 543
Query: 340 TEKYEIDGQVLEVALARPQTNKR 362
E++G ++++LA+PQ++K+
Sbjct: 544 LNGTELEGIAIDISLAKPQSDKK 566
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 34/164 (20%)
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
+ + ++IG +PK E + ED+G D + L+ DP RNRG+AF+ Y + A
Sbjct: 311 SGHEIYIGKIPKEVYEDTLITLFEDMGKIWD-LRLMMDPLT-GRNRGYAFLTYCDKTSAY 368
Query: 242 YSRQK------MTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTK 295
+ +K M N K++ VS A + L++ N+P++ + +
Sbjct: 369 EAAKKFDGYEIMPGKNLKVN-----VSVANTR---------------LFIGNIPKSKSKE 408
Query: 296 QLKELFQRHGE-VTKVVT----PPGKSGK-RDFGFIHYAERSSA 333
++ F+ H E VT + G+S K R F F+ + + +A
Sbjct: 409 EILAEFKEHTEGVTDCIIYSSPDAGESRKNRGFCFLDFCDHKTA 452
>gi|393911204|gb|EJD76208.1| HnRNP-R, variant [Loa loa]
Length = 696
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 151/263 (57%), Gaps = 11/263 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G E++IG +PK+ E+ L L E +G+++++ L+ D +G ++G+AF+ + K A A
Sbjct: 279 GHEIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTSAYEAA 338
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+ + GK ++ ++S N RLFIGN+PKS +++E ++ GV + P
Sbjct: 339 KKFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPD 398
Query: 222 A--PSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
A +NRGF F+ + ++ A +++K+ + + + V WAE + PD A +
Sbjct: 399 AGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVDWAEQQEEPDEETMA--K 456
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
VK LYV+NL E T +QLKE+F +GEV + RD+ FIH+ ER A+KA++
Sbjct: 457 VKVLYVRNLKEAVTEEQLKEMFSAYGEVDRA------KKIRDYAFIHFMEREPAIKAMEA 510
Query: 340 TEKYEIDGQVLEVALARPQTNKR 362
E++G ++++LA+PQ++K+
Sbjct: 511 LNGTELEGIAIDISLAKPQSDKK 533
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 34/164 (20%)
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
+ + ++IG +PK E + ED+G D + L+ DP RNRG+AF+ Y + A
Sbjct: 278 SGHEIYIGKIPKEVYEDTLITLFEDMGKIWD-LRLMMDPLT-GRNRGYAFLTYCDKTSAY 335
Query: 242 YSRQK------MTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTK 295
+ +K M N K++ VS A + L++ N+P++ + +
Sbjct: 336 EAAKKFDGYEIMPGKNLKVN-----VSVANTR---------------LFIGNIPKSKSKE 375
Query: 296 QLKELFQRHGE-VTKVVT----PPGKSGK-RDFGFIHYAERSSA 333
++ F+ H E VT + G+S K R F F+ + + +A
Sbjct: 376 EILAEFKEHTEGVTDCIIYSSPDAGESRKNRGFCFLDFCDHKTA 419
>gi|168034648|ref|XP_001769824.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678933|gb|EDQ65386.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 281
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 159/280 (56%), Gaps = 18/280 (6%)
Query: 78 EDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVK 137
E++R ISE + KH +L EVF+GGL K+ +EE+L + +G+V EV L+K
Sbjct: 2 EEQRVLPISE--RRKHKKL--------EVFVGGLDKETTEEELESVFGRVGDVVEVRLMK 51
Query: 138 DKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE 197
+ +G++KG+AF+ F S +AKRA +L + +G++ SE N+ LF+GN+ K W +
Sbjct: 52 NAQTGKNKGYAFIRFASAAIAKRASHDLERVEIRGRSCGVLPSEENDTLFLGNISKLWKK 111
Query: 198 KEFRKVIEDVG-PGVDTIELIKDPQAPSRNRGFAFVLY--YNNACADYSRQKMTSANFKL 254
+ + ++ V+ I L++DPQ NRGFAF+ + + A + R + A F
Sbjct: 112 ETVLETLKKFAIENVEDITLMEDPQLEGVNRGFAFIEFNTHKEALNAFRRLQQADAVFGT 171
Query: 255 DGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPP 314
D + ++WA+P + PD SQVK+++V +P +++KELF ++G V ++V
Sbjct: 172 D-RSAKIAWAQPLNEPDED--IMSQVKSVFVDGMPPTWDERKVKELFNKYGAVERIVLAR 228
Query: 315 G--KSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEV 352
+ ++DFGF++Y ER +AL I EI + ++V
Sbjct: 229 NMLSAKRKDFGFVNYVERDAALLCIDALNNTEISYEDIKV 268
>gi|297725433|ref|NP_001175080.1| Os07g0180800 [Oryza sativa Japonica Group]
gi|255677562|dbj|BAH93808.1| Os07g0180800 [Oryza sativa Japonica Group]
Length = 650
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 158/270 (58%), Gaps = 15/270 (5%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+GGL +DA E+D+R + GE+ EV ++ + +G++KG+ FV +R AK+AI E
Sbjct: 237 EVFVGGLHRDAKEDDVRAVFAKAGEITEVRMIMNPLAGKNKGYCFVRYRHAAQAKKAIAE 296
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAP 223
+ GK R ++ N+R+F+GN+ K W +++ K ++ +G +D++ L D P
Sbjct: 297 FGNVKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSNNP 356
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKAL 283
NRGFAF+ + A + +K++ N G V+WAEP + PD QVK++
Sbjct: 357 VCNRGFAFLELETSRDARMAYKKLSQKNAFGKGLNIRVAWAEPLNDPDEKDM---QVKSI 413
Query: 284 YVKNLPENTTTKQLKELFQRHGEVTKVV----TPPGKSGKRDFGFIHYAERSSALKAIK- 338
+V +P + QLKE+F++HG++ VV P K +RDF FI+Y R +A+ ++
Sbjct: 414 FVDGIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAK--RRDFAFINYITREAAISCLES 471
Query: 339 -DTEKYEIDGQV--LEVALARP-QTNKRTE 364
D E++ +G ++V+LA+P Q +K+T+
Sbjct: 472 FDKEEFSKNGSKVNIKVSLAKPAQQSKQTK 501
>gi|358419077|ref|XP_003584119.1| PREDICTED: APOBEC1 complementation factor [Bos taurus]
Length = 461
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 153/265 (57%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y N+ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H+ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFTNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|339234953|ref|XP_003379031.1| RNA-binding protein 47 [Trichinella spiralis]
gi|316978381|gb|EFV61375.1| RNA-binding protein 47 [Trichinella spiralis]
Length = 567
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 147/262 (56%), Gaps = 13/262 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G LP+D +E++L + E +G ++E+ ++ D + G ++G+AFV F KE AK
Sbjct: 80 PPKGCEVFVGKLPRDVTEQELVPVFERVGRIYEMRMMMDFN-GSNRGYAFVTFCDKEQAK 138
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA +L + + G+ I S N RL++ +P+ + ++ R I + GV + L
Sbjct: 139 RACQQLNGFEIRRGRFIGVLKSVDNCRLYVSGIPRDKSREDVRSEIARLTDGVVDVILYP 198
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
S+NRGFAF+ Y ++ A +R+K+ L GN TV WAEP+ D A
Sbjct: 199 SAMDKSKNRGFAFIEYESHRSAAMARRKLAPNRLTLWGNEITVDWAEPERDVDEETMA-- 256
Query: 279 QVKALYVKNLPENTTTKQLKELFQR---HGEVTKVVTPPGKSGKRDFGFIHYAERSSALK 335
QVK LYV+NL +TT + L+E+ + G V +V RD+ F+H++ R A++
Sbjct: 257 QVKKLYVRNLMMHTTEEHLREVVEAISGTGTVERV------KKIRDYAFVHFSRREDAIR 310
Query: 336 AIKDTEKYEIDGQVLEVALARP 357
+ ++DG V+EV LA+P
Sbjct: 311 VQEALNGQDLDGSVVEVKLAKP 332
>gi|73995985|ref|XP_861026.1| PREDICTED: APOBEC1 complementation factor isoform 3 [Canis lupus
familiaris]
Length = 582
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 124/387 (32%), Positives = 194/387 (50%), Gaps = 45/387 (11%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +++
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNRQE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKDAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A +RNRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYG 392
A++A+K +DG +EV LA+P +K + Y+ G S L Y G Y
Sbjct: 279 AVEAMKALNGKMLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGSML-QGEYTYSLGHVYD 336
Query: 393 SVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPR 452
+T LG P+ Y P +P L P + L R
Sbjct: 337 PTTTYLGA--------PVFYA----PQAYTAIPS----------LHFPATKGHL---GNR 371
Query: 453 RVERGPGGRGASSGGSDGSSGRRYRPY 479
+ R P RGA+ G G +GR Y Y
Sbjct: 372 AIIRAPSVRGAA--GVRGLAGRGYLAY 396
>gi|426252733|ref|XP_004020057.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Ovis aries]
Length = 595
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 153/265 (57%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y N+ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H+ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFTNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|426252731|ref|XP_004020056.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Ovis aries]
Length = 587
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 153/265 (57%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y N+ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H+ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFTNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|297490704|ref|XP_002698411.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Bos taurus]
gi|296472874|tpg|DAA14989.1| TPA: apobec-1 complementation factor-like isoform 2 [Bos taurus]
Length = 587
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 153/265 (57%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y N+ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H+ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFTNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|359079976|ref|XP_003587913.1| PREDICTED: APOBEC1 complementation factor [Bos taurus]
gi|296472873|tpg|DAA14988.1| TPA: apobec-1 complementation factor-like isoform 1 [Bos taurus]
Length = 595
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 153/265 (57%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y N+ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H+ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFTNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|301757153|ref|XP_002914427.1| PREDICTED: APOBEC1 complementation factor-like [Ailuropoda
melanoleuca]
gi|281344706|gb|EFB20290.1| hypothetical protein PANDA_002310 [Ailuropoda melanoleuca]
Length = 592
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 154/265 (58%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +++
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNRQE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A SRNRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKSRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 279 AMEAMKALNGKVLDGSPIEVTLAKP 303
>gi|222636546|gb|EEE66678.1| hypothetical protein OsJ_23325 [Oryza sativa Japonica Group]
Length = 345
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 158/270 (58%), Gaps = 15/270 (5%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+GGL +DA E+D+R + GE+ EV ++ + +G++KG+ FV +R AK+AI E
Sbjct: 11 EVFVGGLHRDAKEDDVRAVFAKAGEITEVRMIMNPLAGKNKGYCFVRYRHAAQAKKAIAE 70
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAP 223
+ GK R ++ N+R+F+GN+ K W +++ K ++ +G +D++ L D P
Sbjct: 71 FGNVKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSNNP 130
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKAL 283
NRGFAF+ + A + +K++ N G V+WAEP + PD QVK++
Sbjct: 131 VCNRGFAFLELETSRDARMAYKKLSQKNAFGKGLNIRVAWAEPLNDPDEKDM---QVKSI 187
Query: 284 YVKNLPENTTTKQLKELFQRHGEVTKVV----TPPGKSGKRDFGFIHYAERSSALKAIK- 338
+V +P + QLKE+F++HG++ VV P K +RDF FI+Y R +A+ ++
Sbjct: 188 FVDGIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAK--RRDFAFINYITREAAISCLES 245
Query: 339 -DTEKYEIDGQV--LEVALARP-QTNKRTE 364
D E++ +G ++V+LA+P Q +K+T+
Sbjct: 246 FDKEEFSKNGSKVNIKVSLAKPAQQSKQTK 275
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 19/186 (10%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIG--EVFEVGLVKDKDS-GESKGFAFVAFRS 154
A+P +F+G + K +ED+ + IG + V L D ++ ++GFAF+ +
Sbjct: 84 AVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSNNPVCNRGFAFLELET 143
Query: 155 KEVAKRAIDELCSKDF--KGKTIRCSMSETNN----------RLFIGNVPKSWTEKEFRK 202
A+ A +L K+ KG IR + +E N +F+ +P SW + ++
Sbjct: 144 SRDARMAYKKLSQKNAFGKGLNIRVAWAEPLNDPDEKDMQVKSIFVDGIPTSWDHAQLKE 203
Query: 203 VIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT-- 260
+ + G ++++ L +D + R R FAF+ Y A + F +G+
Sbjct: 204 IFKKHGK-IESVVLSRDMPSAKR-RDFAFINYITREAAISCLESFDKEEFSKNGSKVNIK 261
Query: 261 VSWAEP 266
VS A+P
Sbjct: 262 VSLAKP 267
>gi|326919263|ref|XP_003205901.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Meleagris
gallopavo]
Length = 598
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 143/261 (54%), Gaps = 12/261 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 125
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VME 243
Query: 279 QVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
VK LYV+NL TT +K++F + G V +V RD+ F+H+ R A+ A
Sbjct: 244 TVKILYVRNLMIETTEDTIKKVFGQFNPGCVERV------KKIRDYAFVHFTTREDAIHA 297
Query: 337 IKDTEKYEIDGQVLEVALARP 357
+ + E++G LEV LA+P
Sbjct: 298 MNNLNGVELEGSCLEVTLAKP 318
>gi|363733760|ref|XP_003641292.1| PREDICTED: RNA-binding protein 47 isoform 2 [Gallus gallus]
Length = 597
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 143/261 (54%), Gaps = 12/261 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 125
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VME 243
Query: 279 QVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
VK LYV+NL TT +K++F + G V +V RD+ F+H+ R A+ A
Sbjct: 244 TVKILYVRNLMIETTEDTIKKVFGQFNPGCVERV------KKIRDYAFVHFTTREDAIHA 297
Query: 337 IKDTEKYEIDGQVLEVALARP 357
+ + E++G LEV LA+P
Sbjct: 298 MNNLNGVELEGSCLEVTLAKP 318
>gi|332026895|gb|EGI66996.1| Heterogeneous nuclear ribonucleoprotein Q [Acromyrmex echinatior]
Length = 724
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 161/311 (51%), Gaps = 56/311 (18%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF G +PKD E++L L E G+++++ L+ D SG ++G+AF+ F ++E A+
Sbjct: 156 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQ 215
Query: 160 RAIDELCSKDFK------------------------------------------------ 171
+A+ EL + + K
Sbjct: 216 QAVRELDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTGKLNDYEIRK 275
Query: 172 GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAF 231
GK I ++S N+RLF+GN+PK+ + + PG+ + + P +NRGF F
Sbjct: 276 GKKIGVTVSYNNHRLFVGNIPKNRDRDDLFEEFTKHAPGLTEVIIYSSPDDKKKNRGFCF 335
Query: 232 VLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPEN 291
+ Y ++ A +++++++ K+ G V WA+P+ PD S+V+ LYV+NL ++
Sbjct: 336 LEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQ--TMSKVRVLYVRNLTQD 393
Query: 292 TTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLE 351
+ ++LKE F+++G++ +V +D+ FIH+ +R +A+KA+ + E+ G +E
Sbjct: 394 CSEEKLKESFEQYGKIERV------KKIKDYAFIHFEDRDNAVKAMNELNGKEMGGSHIE 447
Query: 352 VALARPQTNKR 362
V+LA+P ++K+
Sbjct: 448 VSLAKPPSDKK 458
>gi|224049976|ref|XP_002187774.1| PREDICTED: RNA-binding protein 47 isoform 1 [Taeniopygia guttata]
Length = 594
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 143/261 (54%), Gaps = 12/261 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 125
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VME 243
Query: 279 QVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
VK LYV+NL TT +K++F + G V +V RD+ F+H+ R A+ A
Sbjct: 244 TVKILYVRNLMIETTEDTIKKVFGQFNPGCVERV------KKIRDYAFVHFTTREDAIHA 297
Query: 337 IKDTEKYEIDGQVLEVALARP 357
+ + E++G LEV LA+P
Sbjct: 298 MNNLNGVELEGSCLEVTLAKP 318
>gi|356502130|ref|XP_003519874.1| PREDICTED: uncharacterized protein LOC100784338 [Glycine max]
Length = 884
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 155/277 (55%), Gaps = 16/277 (5%)
Query: 74 AVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEV 133
A+E+E + +I+ K K + E+F+GGL +DA+EEDLR + + IGE+ EV
Sbjct: 368 ALEEEHRELEAIANQRKIKKEH---------EIFVGGLDRDATEEDLRKVFQRIGEIVEV 418
Query: 134 GLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPK 193
L K+ + ++KG+AFV F KE AK+A+ E+ + GK + SE N+ LF+GN+
Sbjct: 419 RLHKNSSTNKNKGYAFVKFSDKEHAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICN 478
Query: 194 SWTEKEFRKVIEDVG-PGVDTIELIKDPQAPSRNRGFAFVLY--YNNACADYSRQKMTSA 250
+WT++ ++ ++D G GV+ I L+ D Q + GFAF+ + + +A Y R +
Sbjct: 479 TWTKEAIKQKLKDYGIEGVENIMLVPDVQHEGLSWGFAFLEFSCHADAMLAYKRLQKPDV 538
Query: 251 NFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV 310
F T V++AEP PD A QVK++++ LP + ++ELF+ +GEV ++
Sbjct: 539 MFGHAERTAKVAFAEPIREPDPEIMA--QVKSVFINGLPPHWDEDHVRELFKSYGEVVRI 596
Query: 311 VTPPGKSG--KRDFGFIHYAERSSALKAIKDTEKYEI 345
V S ++D+GF+ ++ +A+ + K E+
Sbjct: 597 VLARNMSSAKRKDYGFVDFSTHEAAVACVDGVNKSEL 633
>gi|440898350|gb|ELR49866.1| APOBEC1 complementation factor [Bos grunniens mutus]
Length = 595
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 153/265 (57%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y N+ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H+ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEVIEKEFNNIKPGAVERV------KKIRDYAFVHFTNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|326919265|ref|XP_003205902.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Meleagris
gallopavo]
Length = 529
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 143/261 (54%), Gaps = 12/261 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 125
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VME 243
Query: 279 QVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
VK LYV+NL TT +K++F + G V +V RD+ F+H+ R A+ A
Sbjct: 244 TVKILYVRNLMIETTEDTIKKVFGQFNPGCVERV------KKIRDYAFVHFTTREDAIHA 297
Query: 337 IKDTEKYEIDGQVLEVALARP 357
+ + E++G LEV LA+P
Sbjct: 298 MNNLNGVELEGSCLEVTLAKP 318
>gi|118090545|ref|XP_001232620.1| PREDICTED: RNA-binding protein 47 isoform 1 [Gallus gallus]
Length = 528
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 143/261 (54%), Gaps = 12/261 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 125
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VME 243
Query: 279 QVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
VK LYV+NL TT +K++F + G V +V RD+ F+H+ R A+ A
Sbjct: 244 TVKILYVRNLMIETTEDTIKKVFGQFNPGCVERV------KKIRDYAFVHFTTREDAIHA 297
Query: 337 IKDTEKYEIDGQVLEVALARP 357
+ + E++G LEV LA+P
Sbjct: 298 MNNLNGVELEGSCLEVTLAKP 318
>gi|443733097|gb|ELU17586.1| hypothetical protein CAPTEDRAFT_178834 [Capitella teleta]
Length = 545
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 160/273 (58%), Gaps = 19/273 (6%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF G +PKD E++L L E G +++ L+ + +G ++G+AFV F +++ A+
Sbjct: 169 PGPGHEVFAGKIPKDMFEDELVPLFENCGPIWDFRLMMEPLTGLNRGYAFVTFTTRDAAQ 228
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTE----KEFRKVIEDVGPGVDTI 214
A+ +L + + K + ++ ++S N RLF+GN+PKS T +EF K+ E + D I
Sbjct: 229 EAVKQLDNYEIKPTRRLKVNVSVANVRLFVGNIPKSKTREEIIEEFSKLTESL---TDVI 285
Query: 215 ELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
A +NRGFAF+ Y ++ A +++K+ + ++ V WA+P+ PD
Sbjct: 286 VYNVADDAKKKNRGFAFLEYDSHKSASVAKRKLGNGRQRVWNCDIIVDWADPQEEPDEE- 344
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
S+VK LYV+NL ++ T Q++E F+ G+V +V +D+GF+H+ ER AL
Sbjct: 345 -TMSKVKVLYVRNLKQDVTEDQIREKFEVFGKVERV------KKIKDYGFVHFEEREHAL 397
Query: 335 KAIKDTE-KYEI-DGQVLEVALARPQT-NKRTE 364
A+KD K E+ +G V+E++LA+P T NK+ E
Sbjct: 398 AAMKDLNGKQELGEGSVMEISLAKPPTENKKKE 430
>gi|431839024|gb|ELK00953.1| APOBEC1 complementation factor [Pteropus alecto]
Length = 543
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 153/265 (57%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D SG ++G+AFV F +K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FSGNNRGYAFVTFSNKQE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H+ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFNNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|73995983|ref|XP_534776.2| PREDICTED: APOBEC1 complementation factor isoform 1 [Canis lupus
familiaris]
Length = 590
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 169/307 (55%), Gaps = 18/307 (5%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +++
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNRQE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKDAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A +RNRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYG 392
A++A+K +DG +EV LA+P +K + Y+ G S L Y G Y
Sbjct: 279 AVEAMKALNGKMLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGSML-QGEYTYSLGHVYD 336
Query: 393 SVSTGLG 399
+T LG
Sbjct: 337 PTTTYLG 343
>gi|327273505|ref|XP_003221521.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 47-like [Anolis
carolinensis]
Length = 603
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 143/261 (54%), Gaps = 12/261 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 69 PPRGCEVFVGKIPRDVYEDELVPVFETAGRIYEMRLMMDFD-GKNRGYAFVMYTQKYEAK 127
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 128 RAVKELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 187
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 188 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VME 245
Query: 279 QVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
VK LYV+NL TT +K++F + G V +V RD+ F+H+ R A++A
Sbjct: 246 TVKILYVRNLMIETTEDTIKKVFGQFNPGCVERV------KKIRDYAFVHFTSREDAVQA 299
Query: 337 IKDTEKYEIDGQVLEVALARP 357
+ + E++G LEV LA+P
Sbjct: 300 MNNLNNTELEGSCLEVTLAKP 320
>gi|444512913|gb|ELV10212.1| APOBEC1 complementation factor [Tupaia chinensis]
Length = 598
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 154/265 (58%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+
Sbjct: 53 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQE 111
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 112 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 169
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 170 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 228
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 229 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 281
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 282 AVEAMKALNGKMLDGSPIEVTLAKP 306
>gi|321478600|gb|EFX89557.1| hypothetical protein DAPPUDRAFT_24221 [Daphnia pulex]
Length = 290
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 145/258 (56%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G+E+F+G LP+D E++L + IG ++E+ L+ D SG ++GFAF+ F ++ A RAI
Sbjct: 41 GTEIFVGKLPRDVFEDELYRIFSTIGPIYELRLMMD-FSGSNRGFAFIQFAHRQDANRAI 99
Query: 163 DELCSKDFKGKT-IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+ + + + + I S N RLFIG +PK+ + +E + +E + GV + +
Sbjct: 100 QLMDNYELRPRHHIGVVKSIDNCRLFIGGIPKTKSREEIQGEMERLTEGVTKVIVYSSIT 159
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
++NRGFAFV Y N+ A +R+K+ +L G V WAEP++ + SQV
Sbjct: 160 DKTKNRGFAFVEYINHRAASKARRKLIPDRIQLWGKEIAVDWAEPENEIEED--VMSQVT 217
Query: 282 ALYVKNLPENTTTKQLKELFQRHGE--VTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT + L+ELF R + V K+ RDF FIH++ R A KA+++
Sbjct: 218 VLYVRNLSLTTTEQVLRELFNRVSDDNVQKL------KMMRDFAFIHFSSREKAEKAMRN 271
Query: 340 TEKYEIDGQVLEVALARP 357
EI+G +E+ A+P
Sbjct: 272 MNHTEINGTTIEITWAKP 289
>gi|149610011|ref|XP_001505728.1| PREDICTED: RNA-binding protein 47 isoform 1 [Ornithorhynchus
anatinus]
Length = 591
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 143/261 (54%), Gaps = 12/261 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 72 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVTYTHKHEAK 130
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 131 RAVRELNNYEVRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 190
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 191 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VME 248
Query: 279 QVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
VK LYV+NL TT + +K+ F + G V +V RD+ F+H+ R A++A
Sbjct: 249 TVKILYVRNLMIETTEEAIKKSFGQFNPGCVERV------KKIRDYAFVHFVSREDAVRA 302
Query: 337 IKDTEKYEIDGQVLEVALARP 357
+ E++G LEV LA+P
Sbjct: 303 MNSLNGTELEGSCLEVTLAKP 323
>gi|410895527|ref|XP_003961251.1| PREDICTED: APOBEC1 complementation factor-like [Takifugu rubripes]
Length = 613
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 148/260 (56%), Gaps = 16/260 (6%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
GSE+F+G LP+D E++L LCE G+++EV ++ D SG ++G+AFV F +K+ AK A+
Sbjct: 56 GSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMD-FSGNNRGYAFVTFSNKQEAKAAM 114
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+L + + + G+ + S N RLF+G +PK+ +E + V GV +++I P
Sbjct: 115 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEIMCEMRKVTDGV--LDVIVYPS 172
Query: 222 AP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
A S+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D A
Sbjct: 173 AADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEVEVDEDTMAT-- 230
Query: 280 VKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
VK LYV+NL TT + +++ F + G V +V RD+ F+H+ +R A+ A+
Sbjct: 231 VKILYVRNLMLQTTEETIEKEFNSLKQGAVERV------KKIRDYAFVHFTQREDAIHAM 284
Query: 338 KDTEKYEIDGQVLEVALARP 357
+DG +EV LA+P
Sbjct: 285 NALNGKVVDGSPIEVTLAKP 304
>gi|332212196|ref|XP_003255205.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Nomascus
leucogenys]
Length = 587
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 192/387 (49%), Gaps = 45/387 (11%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYG 392
A++A+K +DG +EV LA+P +K + Y+ G + L Y G Y
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGTML-QGEYTYSLGQVYD 336
Query: 393 SVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPR 452
+T LG P+ Y P +P L P + L R
Sbjct: 337 PTTTYLGA--------PVFYA----PQAYAAIPS----------LHFPATKGHL---SNR 371
Query: 453 RVERGPGGRGASSGGSDGSSGRRYRPY 479
+ R P RGA+ G G GR Y Y
Sbjct: 372 AIIRAPSVRGAA--GVRGLGGRGYLAY 396
>gi|224133750|ref|XP_002327671.1| predicted protein [Populus trichocarpa]
gi|222836756|gb|EEE75149.1| predicted protein [Populus trichocarpa]
Length = 284
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/268 (34%), Positives = 152/268 (56%), Gaps = 16/268 (5%)
Query: 75 VEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVG 134
+EDE + +++++ K K + E+F+GGL +DA+EEDLR + E IGEV EV
Sbjct: 1 MEDERRELTAVAKERKIKKEY---------EIFVGGLDRDATEEDLRKVFEKIGEVVEVR 51
Query: 135 LVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKS 194
L K+ + +KG+AFV F SKE KRA+ E+ + +GK + SE N+ LF+GN+ +
Sbjct: 52 LHKNLSTNRNKGYAFVKFASKEHVKRALSEMKNPVIRGKRCGTAPSEDNDTLFLGNICNT 111
Query: 195 WTEKEFRKVIEDVG-PGVDTIELIKDPQAPSRNRGFAFVLY--YNNACADYSRQKMTSAN 251
WT++ R+ ++D G GV+ I ++ D Q R+RGFAF+ + + +A Y R +
Sbjct: 112 WTKEAIRQKLKDYGVEGVENITVVSDAQHEGRSRGFAFLEFACHADAMLAYKRLQKPDVV 171
Query: 252 FKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVV 311
F T V++AEP PD A QVK +++ LP + +++E + +GE+ +VV
Sbjct: 172 FGHPERTAKVAFAEPIREPDPEIMA--QVKTIFLDGLPPHWDEDRVRECLKGYGEIVRVV 229
Query: 312 TPPGKSG--KRDFGFIHYAERSSALKAI 337
S ++DFGF+ ++ A+ I
Sbjct: 230 LARNMSTAKRKDFGFVDFSTHDDAVACI 257
>gi|197099260|ref|NP_001127437.1| APOBEC1 complementation factor [Pongo abelii]
gi|75070678|sp|Q5R9H4.1|A1CF_PONAB RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|55729715|emb|CAH91586.1| hypothetical protein [Pongo abelii]
Length = 587
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 192/387 (49%), Gaps = 45/387 (11%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYG 392
A++A+K +DG +EV LA+P +K + Y+ G + L Y G Y
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGTML-QGEYTYSLGQVYD 336
Query: 393 SVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPR 452
+T LG P+ Y P +P L P + L R
Sbjct: 337 PTTTYLGA--------PVFYA----PQAYAAIPS----------LHFPATKGHL---SNR 371
Query: 453 RVERGPGGRGASSGGSDGSSGRRYRPY 479
+ R P RGA+ G G GR Y Y
Sbjct: 372 AIIRAPSVRGAA--GVRGLGGRGYLAY 396
>gi|126272659|ref|XP_001363608.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Monodelphis
domestica]
Length = 586
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/265 (36%), Positives = 151/265 (56%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++EV ++ D + G ++G+AFV F +K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELVPLCEKIGKIYEVRMMMDFN-GNNRGYAFVTFSNKQE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + L++ F + G V +V RD+ F+H+ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEETLEKEFNSIKPGSVERV------KKIRDYAFVHFNNRDD 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A+ A+K +DG +EV LA+P
Sbjct: 279 AVNAMKALNGKVLDGSPIEVTLAKP 303
>gi|126272657|ref|XP_001363520.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Monodelphis
domestica]
Length = 594
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/265 (36%), Positives = 151/265 (56%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++EV ++ D + G ++G+AFV F +K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELVPLCEKIGKIYEVRMMMDFN-GNNRGYAFVTFSNKQE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + L++ F + G V +V RD+ F+H+ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEETLEKEFNSIKPGSVERV------KKIRDYAFVHFNNRDD 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A+ A+K +DG +EV LA+P
Sbjct: 279 AVNAMKALNGKVLDGSPIEVTLAKP 303
>gi|338716785|ref|XP_001501741.3| PREDICTED: APOBEC1 complementation factor isoform 1 [Equus
caballus]
Length = 597
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 154/265 (58%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 279 AVEAMKALHGKVLDGSPIEVTLAKP 303
>gi|260812205|ref|XP_002600811.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
gi|229286101|gb|EEN56823.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
Length = 531
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/265 (36%), Positives = 151/265 (56%), Gaps = 19/265 (7%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF+G +P+D E++L + E IG+++E+ L+ D + G ++G+AFV + S++ AK
Sbjct: 55 PSRGCEVFVGKIPRDLFEDELVPVFESIGKIYELRLMMDFN-GNNRGYAFVMYTSRDDAK 113
Query: 160 RAIDELCSKDF-KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ +L + + KG+ + S N RLF+G +PK+ + E + + V GV +++I
Sbjct: 114 RAVKQLNNYEIRKGRLLGVCPSVDNCRLFVGGIPKNKKKHEILEEMSKVTEGV--VDVIV 171
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 172 YPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGHQIAVDWAEPEVEVDEDIMK 231
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK----RDFGFIHYAERSS 332
+ VK LYV+NL TT + LKE F+ V PG + RD+ F+H+ R
Sbjct: 232 S--VKVLYVRNLLLTTTEESLKESFEN-------VVSPGSVERVKKIRDYAFVHFKTREE 282
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A+KA+ T IDG +EV LA+P
Sbjct: 283 AVKAMNATNGQLIDGCQVEVTLAKP 307
>gi|338716787|ref|XP_003363516.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Equus
caballus]
Length = 589
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 154/265 (58%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 279 AVEAMKALHGKVLDGSPIEVTLAKP 303
>gi|297301400|ref|XP_001100328.2| PREDICTED: APOBEC1 complementation factor isoform 3 [Macaca
mulatta]
gi|402880834|ref|XP_003903994.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Papio anubis]
Length = 558
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 192/387 (49%), Gaps = 45/387 (11%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 24 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLE 82
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 83 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 140
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 141 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 199
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 200 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 252
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYG 392
A++A+K +DG +EV LA+P +K + Y+ G + L Y G Y
Sbjct: 253 AVEAMKALNGKVLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGTML-QGEYTYSLGQVYD 310
Query: 393 SVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPR 452
+T LG P+ Y P +P L P + L R
Sbjct: 311 PTTTYLGA--------PVFYA----PQAYAAIPS----------LHFPATKGHL---SNR 345
Query: 453 RVERGPGGRGASSGGSDGSSGRRYRPY 479
+ R P RGA+ G G GR Y Y
Sbjct: 346 AIIRAPSIRGAA--GVRGLGGRGYLAY 370
>gi|296220673|ref|XP_002756407.1| PREDICTED: APOBEC1 complementation factor isoform 4 [Callithrix
jacchus]
Length = 560
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 192/387 (49%), Gaps = 45/387 (11%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 24 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLE 82
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 83 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 140
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 141 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 199
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 200 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 252
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYG 392
A++A+K +DG +EV LA+P +K + Y+ G + L Y G Y
Sbjct: 253 AVEAMKALNGKVLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGTML-QGEYTYSLGQVYD 310
Query: 393 SVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPR 452
+T LG P+ Y P +P L P + L R
Sbjct: 311 PTTTYLGA--------PVFYA----PQAYAAIPS----------LHFPATKGHL---SNR 345
Query: 453 RVERGPGGRGASSGGSDGSSGRRYRPY 479
+ R P RGA+ G G GR Y Y
Sbjct: 346 AIIRAPSVRGAA--GVRGLGGRGYLAY 370
>gi|149610013|ref|XP_001505770.1| PREDICTED: RNA-binding protein 47 isoform 2 [Ornithorhynchus
anatinus]
Length = 522
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 143/261 (54%), Gaps = 12/261 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 72 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVTYTHKHEAK 130
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 131 RAVRELNNYEVRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 190
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 191 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VME 248
Query: 279 QVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
VK LYV+NL TT + +K+ F + G V +V RD+ F+H+ R A++A
Sbjct: 249 TVKILYVRNLMIETTEEAIKKSFGQFNPGCVERV------KKIRDYAFVHFVSREDAVRA 302
Query: 337 IKDTEKYEIDGQVLEVALARP 357
+ E++G LEV LA+P
Sbjct: 303 MNSLNGTELEGSCLEVTLAKP 323
>gi|126342214|ref|XP_001362315.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Monodelphis
domestica]
Length = 583
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 141/259 (54%), Gaps = 10/259 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E +G ++++ L+ D D G+++G+AFV + K AK
Sbjct: 66 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYQMRLMMDFD-GKNRGYAFVMYTHKREAK 124
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK E + I V GV + +
Sbjct: 125 RAVRELDNHEIRPGRPLGVCCSVDNCRLFIGGIPKMKKRDEILEEISKVTEGVLDVIVYA 184
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
++NRGFAF+ Y ++ A +R+K+ +L G V WAEP+ D
Sbjct: 185 SATDKTKNRGFAFIEYESHRAAAMARRKLMPGRIQLWGQQIAVDWAEPEMDVDED--VME 242
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
VK LYV+NL T+ + +++ F + G V +V RD+ F+H+ R A++A+
Sbjct: 243 TVKILYVRNLMIKTSEETIRKTFSQFGCVERV------KKIRDYAFVHFTSREDAIRAMN 296
Query: 339 DTEKYEIDGQVLEVALARP 357
E++G L V LA+P
Sbjct: 297 SLNGTELEGSCLGVTLAKP 315
>gi|403260036|ref|XP_003922494.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Saimiri
boliviensis boliviensis]
Length = 559
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 192/387 (49%), Gaps = 45/387 (11%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 24 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLE 82
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 83 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 140
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 141 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 199
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 200 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 252
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYG 392
A++A+K +DG +EV LA+P +K + Y+ G + L Y G Y
Sbjct: 253 AVEAMKALNGKVLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGTML-QGEYTYSLGQVYD 310
Query: 393 SVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPR 452
+T LG P+ Y P +P L P + L R
Sbjct: 311 PTTTYLGA--------PVFYA----PQAYAAIPS----------LHFPATKGHL---SNR 345
Query: 453 RVERGPGGRGASSGGSDGSSGRRYRPY 479
+ R P RGA+ G G GR Y Y
Sbjct: 346 AIIRAPSVRGAA--GVRGLGGRGYLAY 370
>gi|291233435|ref|XP_002736660.1| PREDICTED: apobec-1 complementation factor-like [Saccoglossus
kowalevskii]
Length = 625
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 148/263 (56%), Gaps = 16/263 (6%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G E+F+G +P+D E++L + +G ++E+ L+ D SG ++G+AFV + +KE AK
Sbjct: 71 PGRGCEIFVGKIPRDLFEDELVPVFMSVGLIYEMRLMMDF-SGNNRGYAFVMYTNKEDAK 129
Query: 160 RAIDELCSKDF-KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
+AI +L + + KG+ + S N RLF+G +PK+ E ++ V GV +++I
Sbjct: 130 KAIKQLNNYEIRKGRYLGVCASVDNCRLFVGGIPKNKKRDEILHEMQKVTEGV--VDVIV 187
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y N+ A +R+K+ +L G+ V WAEP+ D
Sbjct: 188 YPSATDKTKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIAVDWAEPEQEVDEDIMK 247
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
VK LYV+NL NTT + +++ F + G V +V RD+ F+H+ R AL
Sbjct: 248 T--VKVLYVRNLMLNTTEETIEKEFNSLKEGSVERV------KKIRDYAFVHFVTREDAL 299
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
A+ + +DG V+EV LA+P
Sbjct: 300 YALNAMNGHNVDGSVVEVVLAKP 322
>gi|348524054|ref|XP_003449538.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Oreochromis
niloticus]
Length = 604
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 150/260 (57%), Gaps = 16/260 (6%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
GSE+F+G LP+D E++L LCE G+++EV ++ D + G ++G+AFV F +K+ A+ A+
Sbjct: 56 GSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFN-GNNRGYAFVTFSNKQEARAAM 114
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I P
Sbjct: 115 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTDGV--VDVIVYPS 172
Query: 222 AP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
A S+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D A
Sbjct: 173 AADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEVEVDEDTMAT-- 230
Query: 280 VKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
VK LYV+NL TT + +++ F + G V +V RD+ F+H+ +R A+ A+
Sbjct: 231 VKILYVRNLMLQTTEETIEKEFNSLKPGAVERV------KKIRDYAFVHFTQREDAINAM 284
Query: 338 KDTEKYEIDGQVLEVALARP 357
K +DG +EV LA+P
Sbjct: 285 KALNGKVVDGSPIEVTLAKP 304
>gi|410974963|ref|XP_003993908.1| PREDICTED: LOW QUALITY PROTEIN: APOBEC1 complementation factor
[Felis catus]
Length = 592
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 154/265 (58%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE +G+++E+ ++ D + G ++G+AFV F +++
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKMGKIYEMRMMMDFN-GNNRGYAFVTFSNRQE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKDAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A SRNRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKSRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSSRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|189053709|dbj|BAG35961.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|348524056|ref|XP_003449539.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Oreochromis
niloticus]
Length = 612
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 150/260 (57%), Gaps = 16/260 (6%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
GSE+F+G LP+D E++L LCE G+++EV ++ D + G ++G+AFV F +K+ A+ A+
Sbjct: 56 GSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFN-GNNRGYAFVTFSNKQEARAAM 114
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I P
Sbjct: 115 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTDGV--VDVIVYPS 172
Query: 222 AP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
A S+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D A
Sbjct: 173 AADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEVEVDEDTMAT-- 230
Query: 280 VKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
VK LYV+NL TT + +++ F + G V +V RD+ F+H+ +R A+ A+
Sbjct: 231 VKILYVRNLMLQTTEETIEKEFNSLKPGAVERV------KKIRDYAFVHFTQREDAINAM 284
Query: 338 KDTEKYEIDGQVLEVALARP 357
K +DG +EV LA+P
Sbjct: 285 KALNGKVVDGSPIEVTLAKP 304
>gi|197102464|ref|NP_001126631.1| heterogeneous nuclear ribonucleoprotein R [Pongo abelii]
gi|55732180|emb|CAH92794.1| hypothetical protein [Pongo abelii]
Length = 633
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|431893805|gb|ELK03622.1| RNA-binding protein 47 [Pteropus alecto]
Length = 578
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 144/263 (54%), Gaps = 12/263 (4%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K
Sbjct: 56 AHPQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNE 114
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AKRA+ EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 115 AKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIV 174
Query: 217 IKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 175 YASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--V 232
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
VK LYV+NL TT +K++F + G V +V RD+ F+H+A R A+
Sbjct: 233 METVKILYVRNLMIETTEDTIKKIFGQFNPGCVERV------KKIRDYAFVHFASREDAV 286
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
A+ + E++G LEV LA+P
Sbjct: 287 HAMNNLNGTELEGSCLEVTLAKP 309
>gi|397478941|ref|XP_003810792.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1 [Pan
paniscus]
Length = 616
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 144 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 203
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 204 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 263
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 264 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 321
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 322 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 375
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 376 EMNGKEIEGEEIEIVLAKPPDKKRKE 401
>gi|395542863|ref|XP_003773344.1| PREDICTED: RNA-binding protein 47 isoform 1 [Sarcophilus harrisii]
Length = 590
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 142/261 (54%), Gaps = 12/261 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTHKHEAK 125
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 185
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VME 243
Query: 279 QVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
VK LYV+NL TT + +K+ F + G V +V RD+ F+H+ R A+ A
Sbjct: 244 TVKILYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSRDDAVHA 297
Query: 337 IKDTEKYEIDGQVLEVALARP 357
+ E++G LEV LA+P
Sbjct: 298 MNSLNGTELEGSCLEVTLAKP 318
>gi|74207436|dbj|BAE30898.1| unnamed protein product [Mus musculus]
Length = 632
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|5031755|ref|NP_005817.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Homo sapiens]
gi|73950240|ref|XP_852945.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Canis lupus familiaris]
gi|301754932|ref|XP_002913314.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Ailuropoda melanoleuca]
gi|332244972|ref|XP_003271637.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Nomascus leucogenys]
gi|332807931|ref|XP_513191.3| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4 [Pan
troglodytes]
gi|397478943|ref|XP_003810793.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2 [Pan
paniscus]
gi|402853336|ref|XP_003891352.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Papio anubis]
gi|426328275|ref|XP_004024925.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Gorilla gorilla gorilla]
gi|12230547|sp|O43390.1|HNRPR_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein R;
Short=hnRNP R
gi|2697103|gb|AAC39540.1| heterogeneous nuclear ribonucleoprotein R [Homo sapiens]
gi|119615448|gb|EAW95042.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_c [Homo
sapiens]
gi|168277942|dbj|BAG10949.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|281351549|gb|EFB27133.1| hypothetical protein PANDA_001090 [Ailuropoda melanoleuca]
gi|380784785|gb|AFE64268.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|383408165|gb|AFH27296.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|384939486|gb|AFI33348.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|410224016|gb|JAA09227.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410262100|gb|JAA19016.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410301026|gb|JAA29113.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410350925|gb|JAA42066.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 633
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|338722113|ref|XP_001501475.3| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Equus caballus]
gi|344287364|ref|XP_003415423.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Loxodonta
africana]
gi|348571199|ref|XP_003471383.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Cavia
porcellus]
Length = 633
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|8515877|gb|AAF76221.1|AF271789_1 APOBEC-1 complementation factor [Homo sapiens]
Length = 586
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 192/387 (49%), Gaps = 45/387 (11%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRKD 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYG 392
A++A+K +DG +EV LA+P +K + Y+ G + L Y G Y
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGTML-QGEYTYSLGQVYD 336
Query: 393 SVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPR 452
+T LG P+ Y P +P L P + L R
Sbjct: 337 PTTTYLGA--------PVFYA----PQTYAAIPS----------LHFPATKGHL---SNR 371
Query: 453 RVERGPGGRGASSGGSDGSSGRRYRPY 479
+ R P RGA+ G G GR Y Y
Sbjct: 372 AIIRAPSVRGAA--GVRGLGGRGYLAY 396
>gi|129277529|ref|NP_001076077.1| heterogeneous nuclear ribonucleoprotein R [Bos taurus]
gi|126717461|gb|AAI33300.1| HNRNPR protein [Bos taurus]
gi|296489987|tpg|DAA32100.1| TPA: heterogeneous nuclear ribonucleoprotein R [Bos taurus]
gi|440897846|gb|ELR49456.1| Heterogeneous nuclear ribonucleoprotein R [Bos grunniens mutus]
Length = 633
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|20357572|ref|NP_055391.2| APOBEC1 complementation factor isoform 1 [Homo sapiens]
gi|311771764|ref|NP_001185747.1| APOBEC1 complementation factor isoform 1 [Homo sapiens]
gi|8574043|emb|CAB94755.1| APOBEC-1 stimulating protein [Homo sapiens]
gi|119574519|gb|EAW54134.1| apobec-1 complementation factor, isoform CRA_b [Homo sapiens]
gi|119574521|gb|EAW54136.1| apobec-1 complementation factor, isoform CRA_b [Homo sapiens]
gi|158257396|dbj|BAF84671.1| unnamed protein product [Homo sapiens]
Length = 586
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 192/387 (49%), Gaps = 45/387 (11%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYG 392
A++A+K +DG +EV LA+P +K + Y+ G + L Y G Y
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGTML-QGEYTYSLGQVYD 336
Query: 393 SVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPR 452
+T LG P+ Y P +P L P + L R
Sbjct: 337 PTTTYLGA--------PVFYA----PQTYAAIPS----------LHFPATKGHL---SNR 371
Query: 453 RVERGPGGRGASSGGSDGSSGRRYRPY 479
+ R P RGA+ G G GR Y Y
Sbjct: 372 AIIRAPSVRGAA--GVRGLGGRGYLAY 396
>gi|6996658|gb|AAF34824.1|AF209192_1 Apobec-1 complementation factor [Homo sapiens]
Length = 586
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 192/387 (49%), Gaps = 45/387 (11%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRKD 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYG 392
A++A+K +DG +EV LA+P +K + Y+ G + L Y G Y
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGTML-QGEYTYSLGQVYD 336
Query: 393 SVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPR 452
+T LG P+ Y P +P L P + L R
Sbjct: 337 PTTTYLGA--------PVFYA----PQTYAAIPS----------LHFPATKGHL---SNR 371
Query: 453 RVERGPGGRGASSGGSDGSSGRRYRPY 479
+ R P RGA+ G G GR Y Y
Sbjct: 372 AIIRAPSVRGAA--GVRGLGGRGYLAY 396
>gi|395820739|ref|XP_003783718.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Otolemur
garnettii]
Length = 584
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 152/265 (57%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E + V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMRKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A S+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRDD 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 279 AIEAMKALNGKVLDGSPIEVTLAKP 303
>gi|395820737|ref|XP_003783717.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Otolemur
garnettii]
Length = 592
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 152/265 (57%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E + V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMRKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A S+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRDD 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 279 AIEAMKALNGKVLDGSPIEVTLAKP 303
>gi|431891280|gb|ELK02157.1| Heterogeneous nuclear ribonucleoprotein R [Pteropus alecto]
Length = 633
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|390465455|ref|XP_002750457.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Callithrix jacchus]
gi|403287392|ref|XP_003934932.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Saimiri boliviensis boliviensis]
Length = 633
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|350592917|ref|XP_001925737.4| PREDICTED: APOBEC1 complementation factor isoform 1 [Sus scrofa]
Length = 662
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 153/265 (57%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H+ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFTNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|417403514|gb|JAA48557.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Desmodus rotundus]
Length = 633
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|68369598|ref|XP_707799.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Danio rerio]
Length = 586
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 150/263 (57%), Gaps = 16/263 (6%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P GSE+F+G LP+D E++L LCE G+++EV ++ D + G ++G+AFV F +K+ AK
Sbjct: 52 PERGSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFN-GNNRGYAFVTFSTKQEAK 110
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I
Sbjct: 111 NAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGV--LDVIV 168
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y + A +R+K+ +L G+ V WAEP+ D A
Sbjct: 169 YPSAADKAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMA 228
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
VK LYV+NL TT + +++ F + G V +V RD+ F+H+++R A+
Sbjct: 229 T--VKILYVRNLMLPTTEETIEKEFNSIKPGAVERV------KKIRDYAFVHFSQREDAI 280
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
A+ IDG +EV LA+P
Sbjct: 281 NAMNALNGKVIDGSPIEVTLAKP 303
>gi|335307327|ref|XP_003127745.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Sus scrofa]
Length = 589
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|62990189|ref|NP_783193.2| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
gi|62471548|gb|AAH93598.1| Heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|13435603|gb|AAH04679.1| Hnrpr protein, partial [Mus musculus]
Length = 601
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 130 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 189
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 190 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 249
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 250 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 307
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 308 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 361
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 362 EMNGKEIEGEEIEIVLAKPPDKKRKE 387
>gi|426221978|ref|XP_004005182.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Ovis aries]
Length = 633
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|397469479|ref|XP_003806379.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Pan paniscus]
Length = 594
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 153/265 (57%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|456753306|gb|JAA74142.1| heterogeneous nuclear ribonucleoprotein R tv2 [Sus scrofa]
Length = 633
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|395821029|ref|XP_003783852.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Otolemur garnettii]
Length = 532
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 60 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 119
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 120 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 179
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 237
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 238 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 291
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 292 EMNGKEIEGEEIEIVLAKPPDKKRKE 317
>gi|20357575|ref|NP_620310.1| APOBEC1 complementation factor isoform 2 [Homo sapiens]
gi|74761651|sp|Q9NQ94.1|A1CF_HUMAN RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|8574041|emb|CAB94754.1| APOBEC-1 stimulating protein [Homo sapiens]
gi|119574518|gb|EAW54133.1| apobec-1 complementation factor, isoform CRA_a [Homo sapiens]
gi|119574523|gb|EAW54138.1| apobec-1 complementation factor, isoform CRA_a [Homo sapiens]
gi|120659916|gb|AAI30520.1| APOBEC1 complementation factor [Homo sapiens]
Length = 594
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 153/265 (57%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|126331699|ref|XP_001365552.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Monodelphis
domestica]
Length = 592
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 142/261 (54%), Gaps = 12/261 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTHKHEAK 125
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 185
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VME 243
Query: 279 QVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
VK LYV+NL TT + +K+ F + G V +V RD+ F+H+ R A+ A
Sbjct: 244 TVKILYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHA 297
Query: 337 IKDTEKYEIDGQVLEVALARP 357
+ E++G LEV LA+P
Sbjct: 298 MNSLNGTELEGSCLEVTLAKP 318
>gi|27903509|gb|AAO24773.1| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEEAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|33859724|ref|NP_083147.1| heterogeneous nuclear ribonucleoprotein R [Mus musculus]
gi|17066599|gb|AAL35332.1|AF441128_1 heterogeneous nuclear ribonucleoprotein R [Mus musculus]
gi|23273731|gb|AAH38051.1| Heterogeneous nuclear ribonucleoprotein R [Mus musculus]
Length = 632
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|395821027|ref|XP_003783851.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Otolemur garnettii]
Length = 633
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|354483012|ref|XP_003503689.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Cricetulus griseus]
gi|344256125|gb|EGW12229.1| Heterogeneous nuclear ribonucleoprotein R [Cricetulus griseus]
Length = 633
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|390465453|ref|XP_002750458.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Callithrix jacchus]
Length = 532
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 60 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 119
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 120 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 179
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 237
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 238 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 291
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 292 EMNGKEIEGEEIEIVLAKPPDKKRKE 317
>gi|348575664|ref|XP_003473608.1| PREDICTED: APOBEC1 complementation factor-like [Cavia porcellus]
Length = 594
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 169/307 (55%), Gaps = 18/307 (5%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEIIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYG 392
A++A+K +DG +EV LA+P +K + Y+ G + LP Y G Y
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGTMLP-GEYTYSLGHIYD 336
Query: 393 SVSTGLG 399
+T LG
Sbjct: 337 PTTTYLG 343
>gi|156151392|ref|NP_001095867.1| heterogeneous nuclear ribonucleoprotein R isoform 4 [Homo sapiens]
gi|73950226|ref|XP_535365.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Canis lupus familiaris]
gi|332244970|ref|XP_003271636.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Nomascus leucogenys]
gi|332807929|ref|XP_003307911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1 [Pan
troglodytes]
gi|402853334|ref|XP_003891351.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Papio anubis]
gi|426328273|ref|XP_004024924.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Gorilla gorilla gorilla]
gi|119615447|gb|EAW95041.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_b [Homo
sapiens]
gi|380784787|gb|AFE64269.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
Length = 532
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 60 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 119
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 120 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 179
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 237
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 238 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 291
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 292 EMNGKEIEGEEIEIVLAKPPDKKRKE 317
>gi|68369596|ref|XP_685178.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Danio rerio]
Length = 594
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 150/263 (57%), Gaps = 16/263 (6%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P GSE+F+G LP+D E++L LCE G+++EV ++ D + G ++G+AFV F +K+ AK
Sbjct: 52 PERGSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFN-GNNRGYAFVTFSTKQEAK 110
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I
Sbjct: 111 NAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGV--LDVIV 168
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y + A +R+K+ +L G+ V WAEP+ D A
Sbjct: 169 YPSAADKAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMA 228
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
VK LYV+NL TT + +++ F + G V +V RD+ F+H+++R A+
Sbjct: 229 T--VKILYVRNLMLPTTEETIEKEFNSIKPGAVERV------KKIRDYAFVHFSQREDAI 280
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
A+ IDG +EV LA+P
Sbjct: 281 NAMNALNGKVIDGSPIEVTLAKP 303
>gi|348529370|ref|XP_003452186.1| PREDICTED: RNA-binding protein 47-like [Oreochromis niloticus]
Length = 607
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 145/261 (55%), Gaps = 12/261 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G E+F+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 81 PPRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTEKHEAK 139
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK+ +E + + V GV + +
Sbjct: 140 RAVRELNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVLDVIVYA 199
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 200 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VME 257
Query: 279 QVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
VK LYV+NL T+ + ++++F + G V +V RD+ F+H+ R A+ A
Sbjct: 258 TVKILYVRNLMMETSEEAIRQIFSQFNPGCVERV------KKIRDYAFVHFTSRDDAVLA 311
Query: 337 IKDTEKYEIDGQVLEVALARP 357
+ + E++G +EV LA+P
Sbjct: 312 MDNLNGTEVEGSCIEVTLAKP 332
>gi|74228775|dbj|BAE21877.1| unnamed protein product [Mus musculus]
Length = 604
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 133 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 192
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 193 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 252
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 253 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 310
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 311 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 364
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 365 EMNGKEIEGEEIEIVLAKPPDKKRKE 390
>gi|403260038|ref|XP_003922495.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Saimiri
boliviensis boliviensis]
Length = 593
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 153/265 (57%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|111494085|gb|AAI10390.1| HNRPR protein [Homo sapiens]
Length = 607
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 135 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 194
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 195 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 254
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 255 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 312
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 313 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 366
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 367 EMNGKEIEGEEIEIVLAKPPDKKRKE 392
>gi|296220667|ref|XP_002756404.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Callithrix
jacchus]
Length = 594
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 153/265 (57%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|74219109|dbj|BAE26696.1| unnamed protein product [Mus musculus]
Length = 610
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 139 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 198
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 199 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 258
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 259 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 316
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 317 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 370
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 371 EMNGKEIEGEEIEIVLAKPPDKKRKE 396
>gi|20357578|ref|NP_620311.1| APOBEC1 complementation factor isoform 3 [Homo sapiens]
gi|311771768|ref|NP_001185749.1| APOBEC1 complementation factor isoform 3 [Homo sapiens]
gi|119574520|gb|EAW54135.1| apobec-1 complementation factor, isoform CRA_c [Homo sapiens]
gi|119574522|gb|EAW54137.1| apobec-1 complementation factor, isoform CRA_c [Homo sapiens]
gi|219521544|gb|AAI44197.1| A1CF protein [Homo sapiens]
Length = 594
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 192/387 (49%), Gaps = 45/387 (11%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 58 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVE 116
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 117 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 174
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 175 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDED- 233
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 234 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 286
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYG 392
A++A+K +DG +EV LA+P +K + Y+ G + L Y G Y
Sbjct: 287 AVEAMKALNGKVLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGTML-QGEYTYSLGQVYD 344
Query: 393 SVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPR 452
+T LG P+ Y P +P L P + L R
Sbjct: 345 PTTTYLGA--------PVFYA----PQTYAAIPS----------LHFPATKGHL---SNR 379
Query: 453 RVERGPGGRGASSGGSDGSSGRRYRPY 479
+ R P RGA+ G G GR Y Y
Sbjct: 380 AIIRAPSVRGAA--GVRGLGGRGYLAY 404
>gi|397469477|ref|XP_003806378.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Pan paniscus]
Length = 594
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 192/387 (49%), Gaps = 45/387 (11%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 58 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVE 116
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 117 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 174
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 175 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDED- 233
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 234 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 286
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYG 392
A++A+K +DG +EV LA+P +K + Y+ G + L Y G Y
Sbjct: 287 AVEAMKALNGKVLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGTML-QGEYTYSLGQVYD 344
Query: 393 SVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPR 452
+T LG P+ Y P +P L P + L R
Sbjct: 345 PTTTYLGA--------PVFYA----PQTYAAIPS----------LHFPATKGHL---SNR 379
Query: 453 RVERGPGGRGASSGGSDGSSGRRYRPY 479
+ R P RGA+ G G GR Y Y
Sbjct: 380 AIIRAPSVRGAA--GVRGLGGRGYLAY 404
>gi|109089789|ref|XP_001100059.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Macaca
mulatta]
gi|402880832|ref|XP_003903993.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Papio anubis]
Length = 592
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 153/265 (57%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|149062249|gb|EDM12672.1| rCG47908 [Rattus norvegicus]
Length = 406
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 60 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 119
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 120 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 179
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 237
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 238 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 291
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 292 EMNGKEIEGEEIEIVLAKPPDKKRKE 317
>gi|74194838|dbj|BAE26010.1| unnamed protein product [Mus musculus]
Length = 632
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKRKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|449280244|gb|EMC87583.1| APOBEC1 complementation factor [Columba livia]
Length = 589
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 152/260 (58%), Gaps = 16/260 (6%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+ AK AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAKNAI 113
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I P
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGV--VDVIVYPS 171
Query: 222 AP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D S
Sbjct: 172 AADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED--TMSS 229
Query: 280 VKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
VK LYV+NL +TT + +++ F + G V +V RD+ F+H+ +R A++A+
Sbjct: 230 VKILYVRNLMLSTTEETIEKEFNNIKPGAVERV------KKIRDYAFVHFNKREDAVEAM 283
Query: 338 KDTEKYEIDGQVLEVALARP 357
K +DG +EV LA+P
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|355562596|gb|EHH19190.1| hypothetical protein EGK_19855 [Macaca mulatta]
Length = 592
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 153/265 (57%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|432918730|ref|XP_004079638.1| PREDICTED: probable RNA-binding protein 46-like [Oryzias latipes]
Length = 591
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 146/263 (55%), Gaps = 12/263 (4%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G EVF+G +P+D E++L L E G ++E L+ + SGE++G+AFV + S+E A RA
Sbjct: 71 RGCEVFVGKVPRDMYEDELVPLFESAGRIYEFRLMMEF-SGENRGYAFVMYTSREEAVRA 129
Query: 162 IDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDP 220
I L + + G+ I +S N RLFIG++P+ ++E + + V GV + +
Sbjct: 130 IQMLDGYEVRPGRFIGVCVSLDNCRLFIGSIPRDRRKEEILEEMRKVTDGVVDVIVYPSS 189
Query: 221 QAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
+RNRGFAFV Y ++ A +R+K+ F+L G+ V WAEP+ D A +V
Sbjct: 190 SDRNRNRGFAFVEYESHKTAAMARRKLIPGTFQLWGHPIQVDWAEPEK--DMEEEAMQRV 247
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+ LYV+NL +TT + L+ F R G V +V D+ F+H+ RS AL +
Sbjct: 248 RVLYVRNLMLDTTEETLRREFSRFKPGSVERV------KKLTDYAFVHFRSRSEALATLA 301
Query: 339 DTEKYEIDGQVLEVALARPQTNK 361
+IDG +EV+LA+P NK
Sbjct: 302 VMNGVQIDGTTVEVSLAKPTGNK 324
>gi|395542865|ref|XP_003773345.1| PREDICTED: RNA-binding protein 47 isoform 2 [Sarcophilus harrisii]
Length = 521
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 142/261 (54%), Gaps = 12/261 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTHKHEAK 125
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 185
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VME 243
Query: 279 QVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
VK LYV+NL TT + +K+ F + G V +V RD+ F+H+ R A+ A
Sbjct: 244 TVKILYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSRDDAVHA 297
Query: 337 IKDTEKYEIDGQVLEVALARP 357
+ E++G LEV LA+P
Sbjct: 298 MNSLNGTELEGSCLEVTLAKP 318
>gi|194383568|dbj|BAG64755.1| unnamed protein product [Homo sapiens]
Length = 587
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 153/265 (57%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 43 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVE 101
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 102 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 159
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 160 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDED- 218
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 219 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 271
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 272 AVEAMKALNGKVLDGSPIEVTLAKP 296
>gi|359476835|ref|XP_002266579.2| PREDICTED: uncharacterized protein LOC100259067 [Vitis vinifera]
gi|297735034|emb|CBI17396.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 159/290 (54%), Gaps = 15/290 (5%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
E+F+GGL +DA EED++ + E IGEV EV L K+ S ++KG+AFV F +KE A RA+ E
Sbjct: 327 EIFVGGLDRDAEEEDVKKVFERIGEVVEVRLHKNLSSNKNKGYAFVKFANKEHASRALSE 386
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAP 223
+ + GK + SE NN LF+GN+ +WT++ ++ ++D G GV I L+ +PQ
Sbjct: 387 MKNPVICGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDYGIEGVGNITLVPNPQHE 446
Query: 224 SRNRGFAFVLY--YNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+RGFAF+ + + +A Y R + F T V++AEP PD A QVK
Sbjct: 447 GLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPLREPDPEIMA--QVK 504
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG--KRDFGFIHYAERSSALKAIKD 339
+++V LP + +++E F+ +GE+ ++V S ++DFGF+ + +AL I
Sbjct: 505 SVFVDGLPPHWDEDRVREQFKGYGEIERIVLARNMSTAKRKDFGFVDFTTHEAALSCIDS 564
Query: 340 TEKYEI-DGQV---LEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGS 385
E+ DG ++V L+ P +T+ V G G H G GS
Sbjct: 565 VNNTELCDGNSKTKVKVRLSNPLP--KTQAVKGGLCGGFRIG--HGGVGS 610
>gi|311771766|ref|NP_001185748.1| APOBEC1 complementation factor isoform 4 [Homo sapiens]
Length = 602
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 153/265 (57%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 58 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVE 116
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 117 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 174
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 175 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDED- 233
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 234 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 286
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 287 AVEAMKALNGKVLDGSPIEVTLAKP 311
>gi|132626770|ref|NP_001006309.3| heterogeneous nuclear ribonucleoprotein R [Gallus gallus]
gi|326932873|ref|XP_003212536.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Meleagris gallopavo]
Length = 633
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F SK+ A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFNKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMN 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|8515879|gb|AAF76222.1|AF271790_1 APOBEC-1 complementation factor related protein [Homo sapiens]
Length = 569
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 192/387 (49%), Gaps = 45/387 (11%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 33 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVE 91
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 92 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 149
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 150 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDED- 208
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 209 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRKD 261
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYG 392
A++A+K +DG +EV LA+P +K + Y+ G + L Y G Y
Sbjct: 262 AVEAMKALNGKVLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGTML-QGEYTYSLGQVYD 319
Query: 393 SVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPR 452
+T LG P+ Y P +P L P + L R
Sbjct: 320 PTTTYLGA--------PVFYA----PQTYAAIPS----------LHFPATKGHL---SNR 354
Query: 453 RVERGPGGRGASSGGSDGSSGRRYRPY 479
+ R P RGA+ G G GR Y Y
Sbjct: 355 AIIRAPSVRGAA--GVRGLGGRGYLAY 379
>gi|363735088|ref|XP_421561.3| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Gallus
gallus]
Length = 589
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 151/260 (58%), Gaps = 16/260 (6%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+ A+ AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEARNAI 113
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I P
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGV--VDVIVYPS 171
Query: 222 AP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D S
Sbjct: 172 AADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED--TMSS 229
Query: 280 VKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
VK LYV+NL +TT + +++ F + G V +V RD+ F+H+ +R A+ A+
Sbjct: 230 VKILYVRNLMLSTTEETIEKEFNNIKQGAVERV------KKIRDYAFVHFNKREDAVHAM 283
Query: 338 KDTEKYEIDGQVLEVALARP 357
K +DG +EV LA+P
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|327288394|ref|XP_003228911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Anolis
carolinensis]
Length = 632
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMN 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|147803493|emb|CAN64286.1| hypothetical protein VITISV_002726 [Vitis vinifera]
Length = 837
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 159/290 (54%), Gaps = 15/290 (5%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
E+F+GGL +DA EED++ + E IGEV EV L K+ S ++KG+AFV F +KE A RA+ E
Sbjct: 327 EIFVGGLDRDAEEEDVKKVFERIGEVVEVRLHKNLSSNKNKGYAFVKFANKEHASRALSE 386
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAP 223
+ + GK + SE NN LF+GN+ +WT++ ++ ++D G GV I L+ +PQ
Sbjct: 387 MKNPVICGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDYGIEGVGNITLVPNPQHE 446
Query: 224 SRNRGFAFVLY--YNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+RGFAF+ + + +A Y R + F T V++AEP PD A QVK
Sbjct: 447 GLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPLREPDPEIMA--QVK 504
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG--KRDFGFIHYAERSSALKAIKD 339
+++V LP + +++E F+ +GE+ ++V S ++DFGF+ + +AL I
Sbjct: 505 SVFVDGLPPHWDEDRVREQFKGYGEIERIVLARNMSTAKRKDFGFVDFTTHEAALSCIDS 564
Query: 340 TEKYEI-DGQV---LEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGS 385
E+ DG ++V L+ P +T+ V G G H G GS
Sbjct: 565 VNNTELCDGNSKTKVKVRLSNPLP--KTQAVKGGLCGGFRIG--HGGVGS 610
>gi|432844963|ref|XP_004065796.1| PREDICTED: RNA-binding protein 47-like [Oryzias latipes]
Length = 602
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 144/261 (55%), Gaps = 12/261 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G E+F+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 79 PPRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTEKHEAK 137
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK+ +E + + V GV + +
Sbjct: 138 RAVRELNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVLDVIVYA 197
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 198 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VME 255
Query: 279 QVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
VK LYV+NL T + ++++F + G V +V RD+ F+H+ R A+ A
Sbjct: 256 TVKILYVRNLMMETNEETIRQIFSQWNPGCVERV------KKIRDYAFVHFTSRDDAVLA 309
Query: 337 IKDTEKYEIDGQVLEVALARP 357
+ + EI+G +EV LA+P
Sbjct: 310 MDNLNGTEIEGSCIEVTLAKP 330
>gi|126331701|ref|XP_001365615.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Monodelphis
domestica]
Length = 523
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 142/261 (54%), Gaps = 12/261 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTHKHEAK 125
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 185
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VME 243
Query: 279 QVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
VK LYV+NL TT + +K+ F + G V +V RD+ F+H+ R A+ A
Sbjct: 244 TVKILYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHA 297
Query: 337 IKDTEKYEIDGQVLEVALARP 357
+ E++G LEV LA+P
Sbjct: 298 MNSLNGTELEGSCLEVTLAKP 318
>gi|349585036|ref|NP_001073493.2| probable RNA-binding protein 46 [Danio rerio]
Length = 523
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 106/288 (36%), Positives = 162/288 (56%), Gaps = 24/288 (8%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+G +P+D E++L + E G ++E L+ + SGE++G+AFV + ++E A+RAI
Sbjct: 59 EVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMMEF-SGENRGYAFVMYTTREKAQRAIQL 117
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
L + + + GK I +S N RLFIG++PK ++E ++ + V GV +++I P A
Sbjct: 118 LDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGV--MDVIVYPSAV 175
Query: 224 SR--NRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
R NRGFAFV Y ++ A +R+K+ F+L G+T V WAEP+ D +V+
Sbjct: 176 DRMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELDEE--TMQRVR 233
Query: 282 ALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL +TT + L+ F + G V +V D+ FIH+ R AL A++
Sbjct: 234 VLYVRNLMLSTTEETLRSEFSQLKPGSVERV------KKLTDYAFIHFYNREDALTALES 287
Query: 340 TEKYEIDGQVLEVALARPQT---NKRTEGVYSCAAGVHPSGLPHAGYG 384
IDG +EV LA+P + NKR G +C GV +G GYG
Sbjct: 288 MNGKVIDGSPIEVTLAKPASKDGNKRF-GPRNCHNGVTAAG----GYG 330
>gi|363735090|ref|XP_003641506.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Gallus
gallus]
Length = 581
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 151/260 (58%), Gaps = 16/260 (6%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+ A+ AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEARNAI 113
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I P
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGV--VDVIVYPS 171
Query: 222 AP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D S
Sbjct: 172 AADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED--TMSS 229
Query: 280 VKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
VK LYV+NL +TT + +++ F + G V +V RD+ F+H+ +R A+ A+
Sbjct: 230 VKILYVRNLMLSTTEETIEKEFNNIKQGAVERV------KKIRDYAFVHFNKREDAVHAM 283
Query: 338 KDTEKYEIDGQVLEVALARP 357
K +DG +EV LA+P
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|221129841|ref|XP_002156950.1| PREDICTED: APOBEC1 complementation factor-like [Hydra
magnipapillata]
Length = 598
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 143/262 (54%), Gaps = 13/262 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G LP+D E++L + E +G ++E+ L+ D + G+++G+ FV + S A+
Sbjct: 84 PPRGCEVFVGKLPRDCYEDELVPVFEKVGTIYELRLMMDYN-GQNRGYGFVIYLSSRDAQ 142
Query: 160 RAIDELCSKDF-KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ L + + K + I S N RLFIG +PK + E + I V V + +
Sbjct: 143 RAVRTLNNYEIRKSRLIGVCHSVDNCRLFIGGIPKKVKKDEILEEISKVTDSVVNVIVYP 202
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
S+NRGFAFV Y + A +R+K+ + +L G+ V WAEP+ D
Sbjct: 203 SATDKSKNRGFAFVEYNCHRSAAMARRKLMNGKIQLWGHPIAVDWAEPEQDIDED--IMD 260
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSS---ALK 335
QVK LY++NL NTT + ++ LF++ EV +V +D+ F+H+ R AL+
Sbjct: 261 QVKVLYIRNLQLNTTEETIENLFKKFAEVERV------KKIKDYCFVHFVTREGARLALE 314
Query: 336 AIKDTEKYEIDGQVLEVALARP 357
++K IDG +EV LA+P
Sbjct: 315 SVKANNGESIDGAKIEVTLAKP 336
>gi|348536212|ref|XP_003455591.1| PREDICTED: probable RNA-binding protein 46-like [Oreochromis
niloticus]
Length = 574
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 144/259 (55%), Gaps = 12/259 (4%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G EVF+G +P+D E+DL L E +G ++E L+ + SGE++G+AFV + +E A+RA
Sbjct: 75 RGCEVFVGKIPRDMYEDDLVPLFEKVGRIYEFRLMMEF-SGENRGYAFVMYTDREAAQRA 133
Query: 162 IDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDP 220
I L + + + GK I +S N RLFIG++PK + E + ++ V GV +
Sbjct: 134 IQMLDNYEVRPGKFIGVCVSLDNCRLFIGSIPKDKRKDEVIEEMKKVTDGVVDAIVYPST 193
Query: 221 QAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV Y ++ A +R+K+ F+L G++ V WAEP+ D +V
Sbjct: 194 TDKNKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHSIQVDWAEPEKDVDEE--VMQRV 251
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+ LYV+NL T+ + L++ F R G V +V D+ FIHY RS AL A+
Sbjct: 252 RVLYVRNLMLETSEETLRQEFSRFKPGCVERV------KKLSDYAFIHYRSRSDALTALS 305
Query: 339 DTEKYEIDGQVLEVALARP 357
IDG +EV LA+P
Sbjct: 306 LMNGAHIDGAAVEVTLAKP 324
>gi|167963512|ref|NP_001108158.1| RNA-binding protein 47 [Danio rerio]
Length = 600
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 145/261 (55%), Gaps = 12/261 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G E+F+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 78 PPRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 136
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK+ +E + + V GV + +
Sbjct: 137 RAVRELNNFEIRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVLDVIVYA 196
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 197 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VME 254
Query: 279 QVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
VK LYV+NL T+ + L++ F + G V +V RD+ F+H+A R A+ A
Sbjct: 255 TVKILYVRNLMIETSEEILRQTFGQFNPGCVERV------KKIRDYAFVHFASRDDAVVA 308
Query: 337 IKDTEKYEIDGQVLEVALARP 357
+ + EI+G +EV LA+P
Sbjct: 309 MDNLNGTEIEGSRIEVTLAKP 329
>gi|449267775|gb|EMC78677.1| Heterogeneous nuclear ribonucleoprotein R [Columba livia]
Length = 633
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F SK+ A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFGKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMN 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|123884311|sp|Q08BH5.1|RBM46_DANRE RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
gi|115528134|gb|AAI24721.1| Zgc:153695 [Danio rerio]
Length = 510
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 106/288 (36%), Positives = 162/288 (56%), Gaps = 24/288 (8%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+G +P+D E++L + E G ++E L+ + SGE++G+AFV + ++E A+RAI
Sbjct: 46 EVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMMEF-SGENRGYAFVMYTTREKAQRAIQL 104
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
L + + + GK I +S N RLFIG++PK ++E ++ + V GV +++I P A
Sbjct: 105 LDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGV--MDVIVYPSAV 162
Query: 224 SR--NRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
R NRGFAFV Y ++ A +R+K+ F+L G+T V WAEP+ D +V+
Sbjct: 163 DRMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELDEE--TMQRVR 220
Query: 282 ALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL +TT + L+ F + G V +V D+ FIH+ R AL A++
Sbjct: 221 VLYVRNLMLSTTEETLRSEFSQLKPGSVERV------KKLTDYAFIHFYNREDALTALES 274
Query: 340 TEKYEIDGQVLEVALARPQT---NKRTEGVYSCAAGVHPSGLPHAGYG 384
IDG +EV LA+P + NKR G +C GV +G GYG
Sbjct: 275 MNGKVIDGSPIEVTLAKPASKDGNKRF-GPRNCHNGVTAAG----GYG 317
>gi|126328455|ref|XP_001366091.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Monodelphis
domestica]
Length = 633
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F K+ A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|395521675|ref|XP_003764941.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Sarcophilus
harrisii]
Length = 563
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F K+ A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|449504773|ref|XP_002187149.2| PREDICTED: APOBEC1 complementation factor [Taeniopygia guttata]
Length = 581
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 151/260 (58%), Gaps = 16/260 (6%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+ AK AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAKNAI 113
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I P
Sbjct: 114 KTLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGV--VDVIVYPS 171
Query: 222 AP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D S
Sbjct: 172 AADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED--TMSS 229
Query: 280 VKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
VK LYV+NL +TT + +++ F + G V +V RD+ F+H+ +R A++A+
Sbjct: 230 VKILYVRNLMLSTTEETIEKEFNSIKPGAVERV------KKIRDYAFVHFNKREHAVEAM 283
Query: 338 KDTEKYEIDGQVLEVALARP 357
K +DG +EV LA+P
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|345326219|ref|XP_001506578.2| PREDICTED: APOBEC1 complementation factor [Ornithorhynchus
anatinus]
Length = 655
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 165/307 (53%), Gaps = 18/307 (5%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+F+G LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+
Sbjct: 50 AAPERGCEIFVGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E + V GV +E+
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMRKVTEGV--VEV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + ++ F + G V +V RD+ F+H+ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEETIEREFNNIKPGAVERV------KKIRDYAFVHFNNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYG 392
A+ A+K +DG +EV LA+P +K + Y+ G + LP Y G Y
Sbjct: 279 AVGAMKALNGKVLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGTSLP-GEYTYTFGHVYD 336
Query: 393 SVSTGLG 399
+ LG
Sbjct: 337 PATAYLG 343
>gi|218199186|gb|EEC81613.1| hypothetical protein OsI_25123 [Oryza sativa Indica Group]
Length = 370
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 141/246 (57%), Gaps = 10/246 (4%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+GGL +DA E+D+R + GE+ EV ++ + +G++KG+ FV +R AK+AI E
Sbjct: 11 EVFVGGLHRDAKEDDVRAVFAKAGEITEVRMIMNPLAGKNKGYCFVRYRHAAQAKKAIAE 70
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAP 223
+ GK R ++ N+R+F+GN+ K W +++ K ++ +G +D++ L D P
Sbjct: 71 FGNAKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSNNP 130
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKAL 283
NRGFAF+ + A + +K++ N V+WAEP + PD A QVK++
Sbjct: 131 VCNRGFAFLELETSRDARMAYKKLSQKNAFGKSLNIRVAWAEPLNDPDEKDA---QVKSI 187
Query: 284 YVKNLPENTTTKQLKELFQRHGEVTKVV----TPPGKSGKRDFGFIHYAERSSALKAIKD 339
+V +P + QLKE+F++HG++ VV P K +RDF FI+Y R +A+ ++
Sbjct: 188 FVDGIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAK--RRDFAFINYITREAAISCLES 245
Query: 340 TEKYEI 345
+K E
Sbjct: 246 FDKEEF 251
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 17/152 (11%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIG--EVFEVGLVKDKDSGE-SKGFAFVAFRS 154
A+P +F+G + K +ED+ + IG + V L D ++ ++GFAF+ +
Sbjct: 84 AVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSNNPVCNRGFAFLELET 143
Query: 155 KEVAKRAIDELCSKDFKGKT--IRCSMSETNN----------RLFIGNVPKSWTEKEFRK 202
A+ A +L K+ GK+ IR + +E N +F+ +P SW + ++
Sbjct: 144 SRDARMAYKKLSQKNAFGKSLNIRVAWAEPLNDPDEKDAQVKSIFVDGIPTSWDHAQLKE 203
Query: 203 VIEDVGPGVDTIELIKDPQAPSRNRGFAFVLY 234
+ + G ++++ L +D + R R FAF+ Y
Sbjct: 204 IFKKHGK-IESVVLSRDMPSAKR-RDFAFINY 233
>gi|297282467|ref|XP_001111802.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 1
[Macaca mulatta]
Length = 636
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 95/270 (35%), Positives = 156/270 (57%), Gaps = 14/270 (5%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTE----KEFRKVIEDVGPGVDTI 214
A+ S + + GK + +S NNRLF+G++PK+ T+ +EF KV VD I
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVI 280
Query: 215 ELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
L P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD
Sbjct: 281 -LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEV 339
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
A +VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+
Sbjct: 340 MA--KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAV 391
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + EI+G+ +E+ LA+P KR E
Sbjct: 392 KAMDEMNGKEIEGEEIEIVLAKPPDKKRKE 421
>gi|449488926|ref|XP_004174439.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein R-like [Taeniopygia guttata]
Length = 517
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F SK+ A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFGKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMN 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|3309585|gb|AAC26114.1| putative RNA binding protein RNP [Dictyostelium discoideum]
Length = 551
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 159/308 (51%), Gaps = 53/308 (17%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGE--VFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
+E+F GG+ K +EE+L ++ + V E+ L+KDK +GESKGF FV F + + +
Sbjct: 91 NNEIFFGGVNKTVNEEELLEIFNENSDNNVLEIRLMKDKLTGESKGFGFVLFNDRSMCRN 150
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDP 220
ID+L K KGK I +SE +LFIGN+PK ++++F + + G+++I+ + P
Sbjct: 151 VIDKLNGKSIKGKIIEVKLSENKRKLFIGNLPKDLSKEQFISIFNEKTEGIESIDFLMSP 210
Query: 221 QAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG--NTPTVSWAEPKST---PDHSAA 275
P++NRGFAF+ Y ++ AD +R+ +T++ KL T TV+W++P T P +
Sbjct: 211 DQPNKNRGFAFIEYQDHYLADTARRILTASTVKLGDYITTLTVNWSDPDPTTLDPQNDPL 270
Query: 276 AASQVKALYVKNLPEN-----TTTKQLKELFQRHG-------------EVTKVVTPPG-- 315
++KA+Y++NLP N + TK + ++ Q + + K++ P G
Sbjct: 271 ENKEIKAIYIRNLPLNHRNDLSITKIINDIIQENSLSILNNNNNNKDDIIEKIIIPQGAP 330
Query: 316 ------------------------KSGKRDFGFIHYAERSSA--LKAIKDTEKYEIDGQV 349
+ KRD+ F+H R A + I + + I+G+V
Sbjct: 331 TLEIINNLNNNLNNNNINNNNNSLNNSKRDYAFVHLKTRELAEEILRIHEEKPININGKV 390
Query: 350 LEVALARP 357
L ++ A+P
Sbjct: 391 LSLSFAKP 398
>gi|417403083|gb|JAA48365.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Desmodus rotundus]
Length = 590
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 142/258 (55%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K++F + G V +V RD+ F+H+A R A+ A+K
Sbjct: 247 ILYVRNLMMETTEDTIKKIFGQFNPGCVERV------KKIRDYAFVHFASREDAVHAMKK 300
Query: 340 TEKYEIDGQVLEVALARP 357
+++G LEV LA+P
Sbjct: 301 LNGTDLEGSCLEVTLAKP 318
>gi|432109353|gb|ELK33614.1| RNA-binding protein 47 [Myotis davidii]
Length = 733
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 142/261 (54%), Gaps = 12/261 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 210 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKADAK 268
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 269 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 328
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 329 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VME 386
Query: 279 QVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
VK LYV+NL TT +K++F + G V +V RD+ F+H+A R A+ A
Sbjct: 387 TVKILYVRNLMIETTEDTIKKVFGQFNPGCVERV------KKIRDYAFVHFASREDAVHA 440
Query: 337 IKDTEKYEIDGQVLEVALARP 357
+ E++G LEV LA+P
Sbjct: 441 MNHLNGTELEGSCLEVTLAKP 461
>gi|156151394|ref|NP_001095868.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Homo sapiens]
gi|12655185|gb|AAH01449.1| HNRPR protein [Homo sapiens]
gi|123982706|gb|ABM83094.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|123997373|gb|ABM86288.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|383408163|gb|AFH27295.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
gi|384939484|gb|AFI33347.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
gi|410262102|gb|JAA19017.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410301028|gb|JAA29114.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410350927|gb|JAA42067.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 636
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/270 (35%), Positives = 156/270 (57%), Gaps = 14/270 (5%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTE----KEFRKVIEDVGPGVDTI 214
A+ S + + GK + +S NNRLF+G++PK+ T+ +EF KV VD I
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVI 280
Query: 215 ELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
L P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD
Sbjct: 281 -LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEV 339
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
A +VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+
Sbjct: 340 MA--KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAV 391
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + EI+G+ +E+ LA+P KR E
Sbjct: 392 KAMDEMNGKEIEGEEIEIVLAKPPDKKRKE 421
>gi|34365228|emb|CAE45953.1| hypothetical protein [Homo sapiens]
Length = 613
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/270 (35%), Positives = 156/270 (57%), Gaps = 14/270 (5%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 138 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 197
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTE----KEFRKVIEDVGPGVDTI 214
A+ S + + GK + +S NNRLF+G++PK+ T+ +EF KV VD I
Sbjct: 198 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVI 257
Query: 215 ELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
L P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD
Sbjct: 258 -LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEV 316
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
A +VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+
Sbjct: 317 MA--KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAV 368
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + EI+G+ +E+ LA+P KR E
Sbjct: 369 KAMDEMNGKEIEGEEIEIVLAKPPDKKRKE 398
>gi|291404365|ref|XP_002718412.1| PREDICTED: apobec-1 complementation factor [Oryctolagus cuniculus]
Length = 596
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 153/265 (57%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L +CE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPICEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSLVKILYVRNLMLSTSEEMIEKEFNNVKPGAVERV------KKIRDYAFVHFSHRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|395501464|ref|XP_003755115.1| PREDICTED: APOBEC1 complementation factor [Sarcophilus harrisii]
Length = 593
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 160/296 (54%), Gaps = 23/296 (7%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE G+++E+ ++ D + G ++G+AFV F +K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKFGKIYEMRMMMDFN-GNNRGYAFVTFSNKQE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCPSVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H+ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEETIEKEFDSIKPGSVERV------KKIRDYAFVHFNNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP-------QTNKRTEGVYSCAAGVHPSGLPHA 381
A+ A+K +DG +EV LA+P + + T G + G HP L H
Sbjct: 279 AVNAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGAVLQGEHPYPLGHV 334
>gi|213983189|ref|NP_001135499.1| RNA binding motif protein 47 [Xenopus (Silurana) tropicalis]
gi|195539941|gb|AAI67901.1| Unknown (protein for MGC:135580) [Xenopus (Silurana) tropicalis]
Length = 412
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 144/261 (55%), Gaps = 12/261 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E G +FE+ L+ D D G+++G+AFV F K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESAGRIFEMRLMMDFD-GKNRGYAFVMFTKKHEAK 125
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
+A+ EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 126 QAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 185
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VME 243
Query: 279 QVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
VK LYV+NL T+ +K++F + G V +V RD+ F+H++ R A+++
Sbjct: 244 TVKILYVRNLMIETSEDTIKKIFGQFNPGCVERV------KKIRDYAFVHFSSREDAVQS 297
Query: 337 IKDTEKYEIDGQVLEVALARP 357
++ E++G +EV LA+P
Sbjct: 298 MRKLNGTELEGSCIEVTLAKP 318
>gi|348571794|ref|XP_003471680.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Cavia porcellus]
Length = 592
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 142/258 (55%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+A R A++A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVQAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|156151396|ref|NP_001095869.1| heterogeneous nuclear ribonucleoprotein R isoform 3 [Homo sapiens]
gi|297282469|ref|XP_002802270.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 2
[Macaca mulatta]
gi|380784783|gb|AFE64267.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
Length = 535
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/270 (35%), Positives = 156/270 (57%), Gaps = 14/270 (5%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 60 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 119
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTE----KEFRKVIEDVGPGVDTI 214
A+ S + + GK + +S NNRLF+G++PK+ T+ +EF KV VD I
Sbjct: 120 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVI 179
Query: 215 ELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
L P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD
Sbjct: 180 -LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEV 238
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
A +VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+
Sbjct: 239 MA--KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAV 290
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + EI+G+ +E+ LA+P KR E
Sbjct: 291 KAMDEMNGKEIEGEEIEIVLAKPPDKKRKE 320
>gi|410927412|ref|XP_003977143.1| PREDICTED: probable RNA-binding protein 46-like [Takifugu rubripes]
Length = 484
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 144/261 (55%), Gaps = 12/261 (4%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L L E G+++E L+ + +GE++G+AFV + +KE A+RAI
Sbjct: 76 CEVFVGKIPRDMYEDELVPLFERAGKLYEFRLMMEF-TGENRGYAFVMYTNKEAAQRAIQ 134
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + GK I +S N RLFIG++PK T+ E ++ V GV + +
Sbjct: 135 MLDNYKVRPGKFIGVCVSLDNCRLFIGSIPKEKTKDEVMAEMKKVTDGVVDVIMYPSSTD 194
Query: 223 PSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKA 282
SRNRGFAFV Y ++ A +R+K+ F+L G + V WAEP+ D +V+
Sbjct: 195 KSRNRGFAFVEYKSHKAAAMARRKLIPGTFQLWGQSIQVDWAEPEK--DVEEEVMQRVRV 252
Query: 283 LYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
+YV+NL +TT + L + F G V +V D+ F+HY R AL A+
Sbjct: 253 IYVRNLMLSTTEETLFQEFSHFKPGSVERV------KKLTDYAFVHYYCREDALAALAIM 306
Query: 341 EKYEIDGQVLEVALARPQTNK 361
+IDG +EV LA+P T K
Sbjct: 307 NGVQIDGATIEVMLAKPATIK 327
>gi|395856660|ref|XP_003800739.1| PREDICTED: RNA-binding protein 47 [Otolemur garnettii]
Length = 591
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 142/263 (53%), Gaps = 12/263 (4%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K
Sbjct: 65 AHPQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHE 123
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AKRA+ EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 124 AKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIV 183
Query: 217 IKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 184 YASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--V 241
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
VK LYV+NL TT +K+ F + G V +V RD+ F+H+A R A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAV 295
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
A+ E++G LEV LA+P
Sbjct: 296 HAMNSLNGTELEGSCLEVTLAKP 318
>gi|327279356|ref|XP_003224422.1| PREDICTED: APOBEC1 complementation factor-like [Anolis
carolinensis]
Length = 589
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 152/260 (58%), Gaps = 16/260 (6%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+ A+ AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEARNAI 113
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+L + + + G+ + S N RLF+G +PK+ +E I+ V GV +++I P
Sbjct: 114 RQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEIKKVTDGV--VDVIVYPS 171
Query: 222 AP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D +A
Sbjct: 172 AADKAKNRGFAFVEYGSHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSA-- 229
Query: 280 VKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
VK LYV+NL +TT + +++ F + G V +V RD+ F+H+ R A++A+
Sbjct: 230 VKILYVRNLMLSTTEETIEKEFSSIKPGSVERV------KKIRDYAFVHFNNREDAVEAM 283
Query: 338 KDTEKYEIDGQVLEVALARP 357
K +DG ++V LA+P
Sbjct: 284 KVLNGKMVDGSPIKVTLAKP 303
>gi|156377726|ref|XP_001630797.1| predicted protein [Nematostella vectensis]
gi|156217825|gb|EDO38734.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 146/265 (55%), Gaps = 15/265 (5%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G+EVFIG +P+D E++L L E GE+ E L D +G +KGFAF F + A +AI
Sbjct: 109 GTEVFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLNKGFAFCTFTKQTSAYQAI 168
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTE----KEFRKVIEDVGPGVDTIELI 217
L KD + G+ + S +N+RLF+ +PK ++ +EF KV D+ V +
Sbjct: 169 TTLNDKDIRPGRRLAICKSRSNSRLFVKGIPKRKSKEEIFQEFSKVTTDL-QDVIVYQSC 227
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT-PTVSWAEPKSTPDHSAAA 276
NRGF F+ Y N + + T ++ G V+WAE + PD+ A
Sbjct: 228 DQGNHGDLNRGFVFLEYANYIAGASALHRFTDGKVRIWGKVLEAVTWAEAREIPDY--AV 285
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
S+VK++YV+N+P + QLK +F ++G++ KV RD+GF+++A+R SA++A
Sbjct: 286 MSKVKSIYVRNVPLPMSETQLKAVFTKYGQIEKV------RKIRDYGFVYFAKRESAVQA 339
Query: 337 IKDTEKYEIDGQVLEVALARPQTNK 361
I IDG LEV+LA PQ+++
Sbjct: 340 IDGINGAYIDGCKLEVSLAIPQSSR 364
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 76/186 (40%), Gaps = 33/186 (17%)
Query: 179 MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNA 238
E+ +FIG +P+ E E ++E G + L DP A N+GFAF +
Sbjct: 105 FQESGTEVFIGKIPRDCLEDELIPLLEKCGE-IREFRLQMDP-ATGLNKGFAFCTFTKQT 162
Query: 239 CADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
A Q +T+ N K P A KS + L+VK +P+ K +
Sbjct: 163 SA---YQAITTLNDK--DIRPGRRLAICKSRSNSR---------LFVKGIPKR---KSKE 205
Query: 299 ELFQRHGEVTK-----VVTPPGKSG-----KRDFGFIHYAER---SSALKAIKDTEKYEI 345
E+FQ +VT +V G R F F+ YA +SAL D K I
Sbjct: 206 EIFQEFSKVTTDLQDVIVYQSCDQGNHGDLNRGFVFLEYANYIAGASALHRFTDG-KVRI 264
Query: 346 DGQVLE 351
G+VLE
Sbjct: 265 WGKVLE 270
>gi|168042168|ref|XP_001773561.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675100|gb|EDQ61599.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 309
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 147/251 (58%), Gaps = 9/251 (3%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EV++GGL KD +EEDL+ L E GEV EV L+++ +G+++G+AFV + S +AKRA +E
Sbjct: 53 EVYVGGLDKDTTEEDLKPLFEKAGEVVEVRLMRNPQTGKNRGYAFVRYSSAAMAKRAAEE 112
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAP 223
L + + +G+ SE N+ L +GN+ KSW ++ + ++ + ++ + L++DPQ
Sbjct: 113 LGTIEIRGRECTAKPSEENDTLHLGNINKSWKKEMVMETLKSLCIERIEELTLMEDPQVE 172
Query: 224 SRNRGFAFVLY--YNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
NRGFAF+ + + +A + + + A F D + V+WA+P PD SQVK
Sbjct: 173 GLNRGFAFIEFSTHKDALEAFRKLQQPDAIFGAD-RSAKVAWAQPLYEPDED--TMSQVK 229
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPG--KSGKRDFGFIHYAERSSALKAIKD 339
+++V +P ++E F ++GE+ ++V + ++DFGF+++ ER +AL I
Sbjct: 230 SVFVDGMPPTWEEVNVREHFGKYGEIERIVLARNMLSAKRKDFGFVNFVERDAALACIDA 289
Query: 340 TEKYE-IDGQV 349
E IDG +
Sbjct: 290 LNNTEIIDGDI 300
>gi|72086008|ref|XP_793277.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Strongylocentrotus purpuratus]
Length = 638
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 159/281 (56%), Gaps = 15/281 (5%)
Query: 98 ALPP--HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSK 155
LPP GSE+F+G +PK+ E+++ L E GEV ++ L+ D +G+++G+AF AF S
Sbjct: 163 TLPPPIQGSEIFVGKIPKEMYEDEIIPLLEQCGEVHDLRLMMDPLTGQNRGYAFAAFTSI 222
Query: 156 EVAKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTI 214
E A+ A+ +L K + ++S +RL++G++PK+ T+ E + V G+ +
Sbjct: 223 EGAREAVKQLNGHKIKDNWQLSVNVSVPKSRLYVGSIPKNKTKDEILEEFAKVEKGLLDV 282
Query: 215 ELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHS 273
+I + RNRGFAF+ + ++ A +++K+ S K+ V WA+P PD
Sbjct: 283 -IIYKTEDKMRNRGFAFLEFDSHKAAASAKRKLASGRIKVWNQINVNVDWADPVIEPD-- 339
Query: 274 AAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSA 333
+ S+VK +Y++NL TT ++KE F ++GEV K +D+ F+H+ ER +A
Sbjct: 340 SDTMSKVKVVYIRNLSTETTEVKIKEDFGQYGEVEKA------KKMKDYCFVHFKERDAA 393
Query: 334 LKAIKDTEKYEIDGQVLEVALARP--QTNKRTEGVYSCAAG 372
+KAI++ E +G +EV+LA+P + K+ E + G
Sbjct: 394 VKAIEEMNGKEYEGTTIEVSLAKPPMENKKKKERIMRQQGG 434
>gi|410917474|ref|XP_003972211.1| PREDICTED: RNA-binding protein 47-like [Takifugu rubripes]
Length = 601
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 144/261 (55%), Gaps = 12/261 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G E+F+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 79 PPRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTEKHEAK 137
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK+ +E + + V GV + +
Sbjct: 138 RAVRELNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVIDVIVYA 197
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 198 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VME 255
Query: 279 QVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
VK LYV+NL T+ + ++++F + G V +V RD+ F+H+ R A+ A
Sbjct: 256 TVKILYVRNLMMETSEETIRKVFSQWNPGCVERV------KKIRDYAFVHFNSRDDAVLA 309
Query: 337 IKDTEKYEIDGQVLEVALARP 357
+ E++G +EV LA+P
Sbjct: 310 MNHLNGTEVEGSCIEVTLAKP 330
>gi|291385687|ref|XP_002709446.1| PREDICTED: RNA binding motif protein 47-like isoform 1 [Oryctolagus
cuniculus]
Length = 591
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 141/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 71 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 129
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 130 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 189
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 190 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 247
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+A R A++A+
Sbjct: 248 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVRAMNS 301
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 302 LNGTELEGSCLEVTLAKP 319
>gi|146231848|gb|ABQ12999.1| hypothetical protein LOC54502 [Bos taurus]
Length = 492
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 141/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+A R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|348571796|ref|XP_003471681.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Cavia porcellus]
Length = 523
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 142/258 (55%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+A R A++A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVQAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|329664912|ref|NP_001192963.1| RNA-binding protein 47 [Bos taurus]
gi|296486627|tpg|DAA28740.1| TPA: RNA binding motif protein 47 [Bos taurus]
gi|440900817|gb|ELR51867.1| RNA-binding protein 47 [Bos grunniens mutus]
Length = 591
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 141/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+A R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|350587465|ref|XP_003128987.3| PREDICTED: RNA-binding protein 47-like isoform 1 [Sus scrofa]
Length = 591
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 141/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+A R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|241606359|ref|XP_002405718.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
gi|215500664|gb|EEC10158.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
Length = 411
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 160/313 (51%), Gaps = 37/313 (11%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVFIG LP+D E++L L E +G ++E+ L+ D +G ++G+AF + ++E A+
Sbjct: 61 PQRGCEVFIGKLPRDFFEDELVPLLETVGPIYELRLMMDF-AGSNRGYAFATYTNREDAR 119
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL K+ + GK I S N RLF+G +P++ T ++ + V GV + L
Sbjct: 120 RAVRELDEKEIRRGKRIGVCKSTDNCRLFVGGIPRTKTREDVFSEMSRVTEGVVNVILYT 179
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKL-DGNTPTVSWAEPKSTPDHSAAAA 277
+RNRGFAFV Y ++ A +R+KM KL +G+ V WAEP+ D
Sbjct: 180 SVMDKTRNRGFAFVEYTDHKTAAVARRKMIPGKMKLWNGHDVAVDWAEPEPQVDED--TM 237
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHG--EVTKVVTPPGKSGKRDFGFIHYAERSSALK 335
S+V LYV+NL +TT +L+E+F +G +V+KV RDF FIHY R A
Sbjct: 238 SKVMVLYVRNLVLSTTEDELREVFSLNGSLKVSKV------KKIRDFAFIHYRSREEATT 291
Query: 336 AI---------------------KDTEKYEIDGQV-LEVALARPQTNKRTEGVYSCAAGV 373
A+ KD + GQ+ + + +P T +Y AA +
Sbjct: 292 ALEAMQTNNAFTPSKLCRSVEEAKDFAAEHVLGQLGIRPEMPQPDVAHLTSPLYVTAAPM 351
Query: 374 HPSGLPHAGYGSF 386
+G + YG+F
Sbjct: 352 GSAG--YGPYGAF 362
>gi|291385689|ref|XP_002709447.1| PREDICTED: RNA binding motif protein 47-like isoform 2 [Oryctolagus
cuniculus]
Length = 522
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 141/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 71 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 129
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 130 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 189
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 190 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 247
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+A R A++A+
Sbjct: 248 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVRAMNS 301
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 302 LNGTELEGSCLEVTLAKP 319
>gi|198430507|ref|XP_002127144.1| PREDICTED: similar to RNA-binding protein 47 (RNA-binding motif
protein 47) [Ciona intestinalis]
Length = 711
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 145/261 (55%), Gaps = 12/261 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G+EVF+G +P+D E++L + E G ++E+ L+ D D G+++G+AFV F +K AK
Sbjct: 108 PPRGAEVFVGKIPRDVFEDELVPVFETAGRIYEMRLMMDFD-GKNRGYAFVMFTAKSDAK 166
Query: 160 RAIDELCSKDF-KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ +L + + KG+ + S N RLF+G +PK+ + + + V GV + +
Sbjct: 167 GAVKKLNNYEIRKGRMLGVCYSVDNCRLFVGGIPKTKKKDDIFAEMTKVTEGVTDVIVYP 226
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 227 SASDKTKNRGFAFVEYDSHRAAAMARRKLIPGRIQLWGHPIAVDWAEPEQDVDDEIMG-- 284
Query: 279 QVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
QVK LYV+NL +TT L+ +F + G V +V RD+ F+H++ R + ++A
Sbjct: 285 QVKVLYVRNLMLDTTEDTLQNVFSQFKPGSVERV------KKIRDYAFVHFSTREACIEA 338
Query: 337 IKDTEKYEIDGQVLEVALARP 357
++ ID +EV LA+P
Sbjct: 339 MEKINGTHIDQAEVEVTLAKP 359
>gi|357114605|ref|XP_003559089.1| PREDICTED: uncharacterized protein LOC100837927 [Brachypodium
distachyon]
Length = 1019
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 142/246 (57%), Gaps = 7/246 (2%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
E+F+GGL +DA EED+R + +G+V +V L KD + +KGFAFV F +KE RA+ E
Sbjct: 512 EIFVGGLNRDAVEEDIRSVFGQVGDVVDVRLHKDLLTNRNKGFAFVKFATKEQVSRALAE 571
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAP 223
+ + +GK + SE N+ LF+GN+ +WT++ +K + D G GV ++ L+ D Q
Sbjct: 572 MKNPMIRGKRCGIAASEDNDTLFLGNICNTWTKEAIKKRLLDYGIEGVQSLTLVPDTQNE 631
Query: 224 SRNRGFAFVLY--YNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
++RGFAF+ + + +A + R + A F T V++AEP PD A +QVK
Sbjct: 632 GQSRGFAFLEFSCHADAMLAFKRLQQPDAMFGHPERTAKVAFAEPIKEPD--AEVMAQVK 689
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG--KRDFGFIHYAERSSALKAIKD 339
++++ LP ++K+ F+ +G + +VV S + DFGF++++ +AL I+
Sbjct: 690 SVFIDGLPPYWDEDRVKDRFKAYGVIERVVLASNMSSAKRNDFGFVNFSTHEAALACIEA 749
Query: 340 TEKYEI 345
T E+
Sbjct: 750 TNNTEL 755
>gi|168060688|ref|XP_001782326.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666185|gb|EDQ52846.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 351
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 155/274 (56%), Gaps = 16/274 (5%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
++ KH +L EV++GGL KD +EEDL+ L + GEV E+ L+++ +G++KGFA
Sbjct: 49 DRRKHKRL--------EVYVGGLDKDTTEEDLKSLFKKAGEVIEIRLMRNPQTGKNKGFA 100
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG 208
F+ + S +AKRA ++ + + +G+ SE N+ L +GN+ KSW ++ + ++ +
Sbjct: 101 FIRYASAAMAKRATEDFETVEIRGRQCTAKPSEENDTLHLGNINKSWKKEMVLETLKSLS 160
Query: 209 -PGVDTIELIKDPQAPSRNRGFAFVLY--YNNACADYSRQKMTSANFKLDGNTPTVSWAE 265
++ + L++DPQ NRGFAF+ + + +A + + + A F + + V+WA+
Sbjct: 161 IESIEELTLMEDPQVEGVNRGFAFIEFSTHKDALDAFRKLQQPDAIFGTE-RSAKVAWAQ 219
Query: 266 PKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPG--KSGKRDFG 323
P PD SQVK+++V +P ++E F ++GE+ ++V + ++DFG
Sbjct: 220 PLYEPDED--TMSQVKSVFVDGMPLTWEEGNVREHFGKYGEIERIVLARNMLSAKRKDFG 277
Query: 324 FIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357
F++Y ER++AL I EI ++V + P
Sbjct: 278 FVNYMERNAALTCIDALNNTEIIDGDMKVLFSWP 311
>gi|74141454|dbj|BAB27533.3| unnamed protein product [Mus musculus]
Length = 381
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 151/259 (58%), Gaps = 9/259 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 130 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 189
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 190 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 249
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 250 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 307
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 308 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 361
Query: 339 DTEKYEIDGQVLEVALARP 357
+ EI+G+ +E+ LA+P
Sbjct: 362 EMNGKEIEGEEIEIVLAKP 380
>gi|351713281|gb|EHB16200.1| RNA-binding protein 47 [Heterocephalus glaber]
Length = 585
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 142/263 (53%), Gaps = 16/263 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AF+ + K
Sbjct: 65 AHPQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFIMYCHKHE 123
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AKRA+ EL + + + G+ + S N RLFIG +PK +E KV E GV + +
Sbjct: 124 AKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKLKKREEIAKVTE----GVLDVIM 179
Query: 217 IKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 180 YASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--V 237
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
VK LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+
Sbjct: 238 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAV 291
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
A+ + E++G LEV LA+P
Sbjct: 292 HAMSNLNGTELEGSCLEVTLAKP 314
>gi|198423269|ref|XP_002131002.1| PREDICTED: similar to APOBEC1 complementation factor [Ciona
intestinalis]
Length = 708
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 124/399 (31%), Positives = 193/399 (48%), Gaps = 39/399 (9%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
+P G EVF+G LP+D E++L + E G ++E+ L+ D + G ++GFAFV + +
Sbjct: 96 VIPGKGCEVFVGKLPRDLYEDELVPVLEKCGRIYELRLMMDFN-GNNRGFAFVKYCAASE 154
Query: 158 AKRAIDELCSKDF-KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
A+ A+ +L + + KG+ + S N RLF+G +PK+ ++E ++ V GV + +
Sbjct: 155 ARAALKDLNNFEIRKGRLLGVCKSVDNCRLFVGGIPKTKQKEEILIEMKKVTEGVCDVIV 214
Query: 217 IKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
+NRGFAFV Y ++ A +R+K+ ++ G+ V WAEP+ D A
Sbjct: 215 YPSAADKQKNRGFAFVEYQDHHTAAMARRKLMHTRPQIWGHPIAVDWAEPEVEVDDDIMA 274
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQR---HGEVTKVVTPPGKSGKRDFGFIHYAERSSA 333
VK LYV+NL NTT +QL+ F G + +V RD+GF+H+ R +A
Sbjct: 275 T--VKILYVRNLMLNTTEEQLEAEFSALVPSGSIERV------KKIRDYGFVHFNTRENA 326
Query: 334 LKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAG-VHPSGLPHAGYGSFAGTA-- 390
+K +K +DG +EV LA+P ++ T Y+ AA V + P G A T
Sbjct: 327 IKCLKQLNGKILDGSPMEVTLAKP-VDRETYVRYTRAANRVVETQEPLTIPGYVATTYDP 385
Query: 391 -YGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRI------GYVLQQPGVQ 443
+ S A G P+ YG +P G +P + R G V Q PG+
Sbjct: 386 RFDPASAAYSYAGG-----PIYYG---VPYGATTIPTLASSPRFAVPPLRGGVPQVPGMV 437
Query: 444 -------MPLPPPRPRRVERGPGGRGASSGGSDGSSGRR 475
+PL P G GRG S G + ++G R
Sbjct: 438 TQIGAAGVPLGIPGATTGIAGAQGRGISLRGRNRAAGSR 476
>gi|26330794|dbj|BAC29127.1| unnamed protein product [Mus musculus]
Length = 590
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMQTVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT + +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|20532346|ref|NP_620704.1| RNA-binding protein 47 [Mus musculus]
gi|188497698|ref|NP_848541.2| RNA-binding protein 47 [Mus musculus]
gi|188497701|ref|NP_001120854.1| RNA-binding protein 47 [Mus musculus]
gi|81916136|sp|Q91WT8.1|RBM47_MOUSE RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|15488668|gb|AAH13481.1| RNA binding motif protein 47 [Mus musculus]
gi|21707976|gb|AAH34195.1| Rbm47 protein [Mus musculus]
gi|26351775|dbj|BAC39524.1| unnamed protein product [Mus musculus]
gi|74206583|dbj|BAE41553.1| unnamed protein product [Mus musculus]
gi|133778325|gb|AAI12903.1| RNA binding motif protein 47 [Mus musculus]
gi|148705813|gb|EDL37760.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
gi|148705814|gb|EDL37761.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
Length = 590
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMQTVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT + +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|66812128|ref|XP_640243.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|37693753|gb|AAQ98887.1| RNA-binding protein [Dictyostelium discoideum]
gi|60468259|gb|EAL66268.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 551
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 157/308 (50%), Gaps = 53/308 (17%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGE--VFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
+E+F GG+ K +EE+L ++ + V E+ L+KDK +GESKGF FV F + + +
Sbjct: 91 NNEIFFGGVNKTVNEEELLEIFNENSDNNVLEIRLMKDKLTGESKGFGFVLFNDRSMCRN 150
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDP 220
ID+L K KGK I SE +LFIGN+PK ++++F + + G+++I+ + P
Sbjct: 151 VIDKLNGKSIKGKIIEVKQSENKRKLFIGNLPKDLSKEQFISIFNEKTEGIESIDFLMSP 210
Query: 221 QAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG--NTPTVSWAEPKST---PDHSAA 275
P++NRGFAF+ Y ++ AD +R+ +T++ KL T TV+W++P T P +
Sbjct: 211 DQPNKNRGFAFIEYQDHYLADTARRILTASTVKLGDYITTLTVNWSDPDPTTLDPQNDPL 270
Query: 276 AASQVKALYVKNLPEN-----TTTKQLKELFQR-------------HGEVTKVVTPPG-- 315
++KA+Y++NLP N + TK + ++ Q + K++ P G
Sbjct: 271 ENKEIKAIYIRNLPLNHRNDLSITKIINDIIQENSLSLLNNNNNNKDDIIEKIIIPQGAP 330
Query: 316 ------------------------KSGKRDFGFIHYAERSSA--LKAIKDTEKYEIDGQV 349
+ KRD+ F+H R A + I + + I+G+V
Sbjct: 331 TLEIINNLNNNLNNNNINNNNNSLNNSKRDYAFVHLKTRELAEEILRIHEEKPININGKV 390
Query: 350 LEVALARP 357
L ++ A+P
Sbjct: 391 LSLSFAKP 398
>gi|426345799|ref|XP_004040586.1| PREDICTED: probable RNA-binding protein 46 [Gorilla gorilla
gorilla]
Length = 514
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 152/269 (56%), Gaps = 16/269 (5%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+
Sbjct: 38 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQ 96
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I
Sbjct: 97 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIV 154
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D
Sbjct: 155 YPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--T 212
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
+VK LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+
Sbjct: 213 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAV 266
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRT 363
A+ IDG +EV LA+P + T
Sbjct: 267 AAMSVMNGKCIDGASIEVTLAKPVNKENT 295
>gi|351715567|gb|EHB18486.1| APOBEC1 complementation factor [Heterocephalus glaber]
Length = 588
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 94/263 (35%), Positives = 151/263 (57%), Gaps = 19/263 (7%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLFIG +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFIGGIPKTKKREEILSEVKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
S VK LYV+NL +T+ +E+ +R E + K D+ F+H+++R A+
Sbjct: 226 -TMSSVKILYVRNLMLSTS----EEIIER--EFNNI-----KPEIWDYAFVHFSKREDAV 273
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
+A+K +DG +EV LA+P
Sbjct: 274 EAMKALNGKVLDGSPIEVTLAKP 296
>gi|350587467|ref|XP_003482419.1| PREDICTED: RNA-binding protein 47-like [Sus scrofa]
Length = 522
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 141/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+A R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|118600907|gb|AAH34402.1| RBM47 protein [Homo sapiens]
gi|119613370|gb|EAW92964.1| RNA-binding protein, isoform CRA_a [Homo sapiens]
Length = 497
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|54312090|ref|NP_001005882.1| RNA-binding protein 47 [Rattus norvegicus]
gi|81910667|sp|Q66H68.1|RBM47_RAT RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|51859195|gb|AAH81995.1| Hypothetical RNA binding protein RGD1359713 [Rattus norvegicus]
gi|149035343|gb|EDL90047.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
gi|149035344|gb|EDL90048.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
Length = 590
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 139/258 (53%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMQTVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT + +K F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEETIKRSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|74216343|dbj|BAE25115.1| unnamed protein product [Mus musculus]
Length = 377
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMQTVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT + +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|119613372|gb|EAW92966.1| RNA-binding protein, isoform CRA_c [Homo sapiens]
Length = 514
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|301787079|ref|XP_002928955.1| PREDICTED: RNA-binding protein 47-like [Ailuropoda melanoleuca]
Length = 630
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 106 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKSEAKRAV 164
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 165 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 224
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 225 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 282
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 283 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFVSREDAVHAMNN 336
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 337 LNGTELEGSCLEVTLAKP 354
>gi|403300669|ref|XP_003941042.1| PREDICTED: RNA-binding protein 47 [Saimiri boliviensis boliviensis]
Length = 631
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|410957715|ref|XP_003985470.1| PREDICTED: RNA-binding protein 47 isoform 2 [Felis catus]
Length = 626
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 107 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 165
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 166 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 225
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 226 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 283
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 284 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFVSREDAVHAMNN 337
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 338 LNGTELEGSCLEVTLAKP 355
>gi|281342615|gb|EFB18199.1| hypothetical protein PANDA_019026 [Ailuropoda melanoleuca]
Length = 594
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKSEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFVSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|344279159|ref|XP_003411358.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Loxodonta
africana]
Length = 593
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 69 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 127
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 128 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 187
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 188 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 245
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 246 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 299
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 300 LNGTELEGSCLEVTLAKP 317
>gi|219521533|gb|AAI43943.1| RNA binding motif protein 47 [Homo sapiens]
Length = 593
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 140/259 (54%), Gaps = 12/259 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARPQ 358
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKPM 319
>gi|432926030|ref|XP_004080795.1| PREDICTED: APOBEC1 complementation factor-like [Oryzias latipes]
Length = 611
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 122/385 (31%), Positives = 193/385 (50%), Gaps = 34/385 (8%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
GSE+F+G LP+D E++L LCE G+++EV ++ D + G ++G+AFV F +K+ AK A
Sbjct: 55 RGSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFN-GNNRGYAFVTFSNKQEAKTA 113
Query: 162 IDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDP 220
+ +L + + + G+ + S N RLF+G +PK E ++ V GV +++I P
Sbjct: 114 MKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKIKKRDEILTEMKKVTDGV--VDVIVYP 171
Query: 221 QAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
A S+NRGFAFV Y ++ A +R+K+ +L G V WAEP+ D A
Sbjct: 172 SAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGYPIAVDWAEPEVEVDDDTMAT- 230
Query: 279 QVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
VK LYV+NL TT + ++ F + G V +V RD+ F+H+ +R A+ A
Sbjct: 231 -VKILYVRNLMLQTTEETIEREFNSLKPGAVERV------KKIRDYAFVHFCQREDAINA 283
Query: 337 IKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFA-GTAYGSVS 395
+ ++G +EV LA+P +K + Y+ G S L Y ++ G Y +
Sbjct: 284 MNALNGKLVEGSPIEVTLAKP-VDKDSYVRYTRGTGGRGSSLLQTDYTAYTLGQVYDPSA 342
Query: 396 TGLGVAAGAGLQQPMIY---GRGQMPAGMHMVPMVLPDGRIGYVLQQPGV-QMPLPPPRP 451
LG P+ Y +P + P G G +++ P V ++ + P
Sbjct: 343 AYLGA--------PVFYAPQAYTALPNQIRFPAAKAPVGGRG-LIRSPSVREIYMTVPVG 393
Query: 452 RRVERGPGGRG--ASSGGSDGSSGR 474
RG GGRG A S G+ G+ GR
Sbjct: 394 AAGVRGLGGRGYLAYSTGA-GALGR 417
>gi|410957713|ref|XP_003985469.1| PREDICTED: RNA-binding protein 47 isoform 1 [Felis catus]
Length = 589
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFVSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|397524560|ref|XP_003832258.1| PREDICTED: RNA-binding protein 47 isoform 1 [Pan paniscus]
gi|397524562|ref|XP_003832259.1| PREDICTED: RNA-binding protein 47 isoform 2 [Pan paniscus]
Length = 593
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|296196676|ref|XP_002745942.1| PREDICTED: RNA-binding protein 47 isoform 1 [Callithrix jacchus]
Length = 594
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|20450941|gb|AAM21973.1| RNA-binding protein [Homo sapiens]
Length = 593
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|397478945|ref|XP_003810794.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3 [Pan
paniscus]
Length = 578
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 151/261 (57%), Gaps = 9/261 (3%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
+VF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+ A+
Sbjct: 111 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 170
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L P
Sbjct: 171 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 230
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKAL 283
+NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A +VK L
Sbjct: 231 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA--KVKVL 288
Query: 284 YVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKY 343
+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 289 FVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGK 342
Query: 344 EIDGQVLEVALARPQTNKRTE 364
EI+G+ +E+ LA+P KR E
Sbjct: 343 EIEGEEIEIVLAKPPDKKRKE 363
>gi|357617562|gb|EHJ70861.1| hypothetical protein KGM_04943 [Danaus plexippus]
Length = 668
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 152/313 (48%), Gaps = 61/313 (19%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF G +PKD E++L L E G ++++ L+ D SG ++G+AFV F ++E +RA+
Sbjct: 164 GCEVFCGKIPKDMYEDELIPLFESCGTIWDLRLMMDPMSGANRGYAFVTFTTREATQRAV 223
Query: 163 DELCSK---DFKGKTIRC------------------------------------------ 177
E DF K C
Sbjct: 224 QEHVINIPIDFGHKYAECDVATARRPAPGAAPRVSMAGVPTVITDLVYMCNVTPLDNHEI 283
Query: 178 --------SMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGF 229
+S N RLF+GN+PKS ++E + + G+ + + P +NRGF
Sbjct: 284 KPGKTLRIKISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLVEVIIYSSPDDKKKNRGF 343
Query: 230 AFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLP 289
F+ Y ++ A +++++ + K+ G V WA+P+ PD S+VK LYV+NL
Sbjct: 344 CFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TMSKVKVLYVRNLT 401
Query: 290 ENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQV 349
+ T + LKE F+R+G V +V +D+ F+H+ +R A+KA+++ + E+ G
Sbjct: 402 QEITEEALKEEFERYGNVERV------KKIKDYAFVHFEDRDCAVKAMQEIDGKELGGAR 455
Query: 350 LEVALARPQTNKR 362
LEV+LA+P ++K+
Sbjct: 456 LEVSLAKPPSDKK 468
>gi|397524566|ref|XP_003832261.1| PREDICTED: RNA-binding protein 47 isoform 4 [Pan paniscus]
Length = 555
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 32 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 90
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 91 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 150
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 151 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 208
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 209 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 262
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 263 LNGTELEGSCLEVTLAKP 280
>gi|160017954|sp|Q5R5P4.2|RBM47_PONAB RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
Length = 593
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|148833513|ref|NP_001092104.1| RNA-binding protein 47 isoform a [Homo sapiens]
gi|313104167|sp|A0AV96.2|RBM47_HUMAN RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
Length = 593
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|109074059|ref|XP_001095125.1| PREDICTED: RNA-binding protein 47 isoform 5 [Macaca mulatta]
gi|109074063|ref|XP_001095351.1| PREDICTED: RNA-binding protein 47 isoform 7 [Macaca mulatta]
gi|114593726|ref|XP_001145550.1| PREDICTED: RNA-binding protein 47 isoform 13 [Pan troglodytes]
gi|402869216|ref|XP_003898662.1| PREDICTED: RNA-binding protein 47 isoform 1 [Papio anubis]
gi|402869218|ref|XP_003898663.1| PREDICTED: RNA-binding protein 47 isoform 2 [Papio anubis]
gi|410038246|ref|XP_003950365.1| PREDICTED: RNA-binding protein 47 [Pan troglodytes]
gi|426344160|ref|XP_004038643.1| PREDICTED: RNA-binding protein 47 isoform 1 [Gorilla gorilla
gorilla]
gi|426344162|ref|XP_004038644.1| PREDICTED: RNA-binding protein 47 isoform 2 [Gorilla gorilla
gorilla]
gi|116496675|gb|AAI26262.1| RBM47 protein [Homo sapiens]
gi|313883194|gb|ADR83083.1| RNA binding motif protein 47 (RBM47), transcript variant 1
[synthetic construct]
gi|355687243|gb|EHH25827.1| RNA-binding motif protein 47 [Macaca mulatta]
gi|355749234|gb|EHH53633.1| RNA-binding motif protein 47 [Macaca fascicularis]
Length = 593
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|444513680|gb|ELV10430.1| RNA-binding protein 47 [Tupaia chinensis]
Length = 580
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 141/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETMGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + + V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEVAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+A R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVLAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|197099430|ref|NP_001127604.1| RNA-binding protein 47 [Pongo abelii]
gi|55732443|emb|CAH92922.1| hypothetical protein [Pongo abelii]
Length = 593
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|50950169|ref|NP_001002955.1| RNA-binding protein 47 [Canis lupus familiaris]
gi|75075043|sp|Q9XSR3.1|RBM47_CANFA RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|5441611|emb|CAB46854.1| hypothetical protein [Canis lupus familiaris]
Length = 592
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 72 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVTYCHKGEAKRAV 130
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 131 RELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 190
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 191 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 248
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+A R A+ A+
Sbjct: 249 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVLAMNS 302
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 303 LNGTELEGSCLEVTLAKP 320
>gi|332219030|ref|XP_003258661.1| PREDICTED: RNA-binding protein 47 isoform 3 [Nomascus leucogenys]
Length = 555
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 32 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 90
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 91 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 150
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 151 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 208
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 209 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 262
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 263 LNGTELEGSCLEVTLAKP 280
>gi|332819357|ref|XP_001144567.2| PREDICTED: RNA-binding protein 47 isoform 1 [Pan troglodytes]
gi|402869222|ref|XP_003898665.1| PREDICTED: RNA-binding protein 47 isoform 4 [Papio anubis]
gi|426344164|ref|XP_004038645.1| PREDICTED: RNA-binding protein 47 isoform 3 [Gorilla gorilla
gorilla]
Length = 555
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 32 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 90
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 91 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 150
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 151 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 208
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 209 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 262
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 263 LNGTELEGSCLEVTLAKP 280
>gi|221044912|dbj|BAH14133.1| unnamed protein product [Homo sapiens]
Length = 555
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 32 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 90
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 91 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 150
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 151 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 208
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 209 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 262
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 263 LNGTELEGSCLEVTLAKP 280
>gi|55727108|emb|CAH90310.1| hypothetical protein [Pongo abelii]
Length = 593
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYAGAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|332219026|ref|XP_003258659.1| PREDICTED: RNA-binding protein 47 isoform 1 [Nomascus leucogenys]
gi|441663629|ref|XP_004091690.1| PREDICTED: RNA-binding protein 47 [Nomascus leucogenys]
Length = 593
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|344245091|gb|EGW01195.1| APOBEC1 complementation factor [Cricetulus griseus]
Length = 1001
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 154/265 (58%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+++ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKK------IRDYAFVHFSNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|255581424|ref|XP_002531520.1| RNA binding protein, putative [Ricinus communis]
gi|223528873|gb|EEF30874.1| RNA binding protein, putative [Ricinus communis]
Length = 841
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 142/246 (57%), Gaps = 7/246 (2%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
E+F+GGL ++A+EED+R + E IGEV EV L ++ +SKG+AFV F +KE AKR++ E
Sbjct: 344 EIFVGGLDREATEEDVRRVFETIGEVVEVRLHRNLAMSKSKGYAFVKFANKEHAKRSLSE 403
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAP 223
+ + GK + SE N+ LF+GN+ +WT++ R+ ++D G GV+ I L+ D Q
Sbjct: 404 MKNPVICGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGVEGVENITLVADVQHE 463
Query: 224 SRNRGFAFVLY--YNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
R+RGFAF+ + + +A Y R + F T V++AEP PD A VK
Sbjct: 464 GRSRGFAFLEFSCHADAMHAYKRLQKPDVVFGHPERTAKVAFAEPIREPDPEVMA--HVK 521
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG--KRDFGFIHYAERSSALKAIKD 339
+++ LP + +++E + +GE+ ++V S ++DFGF+ ++ +A+ I+
Sbjct: 522 TVFLDGLPPHWDEDRVREQLRGYGEIMRIVLARNMSTAKRKDFGFVDFSSHEAAIACIER 581
Query: 340 TEKYEI 345
E+
Sbjct: 582 INNAEL 587
>gi|73950236|ref|XP_866562.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 7
[Canis lupus familiaris]
gi|403287394|ref|XP_003934933.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Saimiri boliviensis boliviensis]
gi|410966348|ref|XP_003989695.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Felis catus]
gi|85681819|gb|ABC73063.1| heterogeneous nuclear ribonucleoprotein-R2 [Homo sapiens]
Length = 595
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 151/261 (57%), Gaps = 9/261 (3%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
+VF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+ A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L P
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKAL 283
+NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A +VK L
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA--KVKVL 305
Query: 284 YVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKY 343
+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 306 FVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGK 359
Query: 344 EIDGQVLEVALARPQTNKRTE 364
EI+G+ +E+ LA+P KR E
Sbjct: 360 EIEGEEIEIVLAKPPDKKRKE 380
>gi|338722115|ref|XP_003364486.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Equus caballus]
Length = 595
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 151/261 (57%), Gaps = 9/261 (3%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
+VF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+ A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L P
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKAL 283
+NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A +VK L
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA--KVKVL 305
Query: 284 YVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKY 343
+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 306 FVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGK 359
Query: 344 EIDGQVLEVALARPQTNKRTE 364
EI+G+ +E+ LA+P KR E
Sbjct: 360 EIEGEEIEIVLAKPPDKKRKE 380
>gi|194386914|dbj|BAG59823.1| unnamed protein product [Homo sapiens]
Length = 595
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 151/261 (57%), Gaps = 9/261 (3%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
+VF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+ A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L P
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKAL 283
+NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A +VK L
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA--KVKVL 305
Query: 284 YVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKY 343
+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 306 FVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGK 359
Query: 344 EIDGQVLEVALARPQTNKRTE 364
EI+G+ +E+ LA+P KR E
Sbjct: 360 EIEGEEIEIVLAKPPDKKRKE 380
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 22/183 (12%)
Query: 181 ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACA 240
E ++F+G +P+ E E + E GP D + L+ DP + +NRG+AF+ + A
Sbjct: 124 EAKIKVFVGKIPRDLYEDELVPLFEKAGPIWD-LRLMMDPLS-GQNRGYAFITFCGKEAA 181
Query: 241 DYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKEL 300
+ + S + P + A+ L+V ++P+N T + + E
Sbjct: 182 QEAVKLCDSYEIR------------PGKHLGVCISVAN--NRLFVGSIPKNKTKENILEE 227
Query: 301 FQRHGE----VTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD--TEKYEIDGQVLEVAL 354
F + E V P K R F F+ Y + SA +A + + K ++ G V+ V
Sbjct: 228 FSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEW 287
Query: 355 ARP 357
A P
Sbjct: 288 ADP 290
>gi|426221980|ref|XP_004005183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Ovis aries]
Length = 595
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 151/261 (57%), Gaps = 9/261 (3%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
+VF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+ A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L P
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKAL 283
+NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A +VK L
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA--KVKVL 305
Query: 284 YVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKY 343
+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 306 FVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGK 359
Query: 344 EIDGQVLEVALARPQTNKRTE 364
EI+G+ +E+ LA+P KR E
Sbjct: 360 EIEGEEIEIVLAKPPDKKRKE 380
>gi|395821031|ref|XP_003783853.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Otolemur garnettii]
Length = 595
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 151/261 (57%), Gaps = 9/261 (3%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
+VF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+ A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L P
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKAL 283
+NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A +VK L
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA--KVKVL 305
Query: 284 YVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKY 343
+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 306 FVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGK 359
Query: 344 EIDGQVLEVALARPQTNKRTE 364
EI+G+ +E+ LA+P KR E
Sbjct: 360 EIEGEEIEIVLAKPPDKKRKE 380
>gi|443720300|gb|ELU10098.1| hypothetical protein CAPTEDRAFT_167544 [Capitella teleta]
Length = 541
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 147/265 (55%), Gaps = 18/265 (6%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF+G +P+D E++L + E IGE++E+ L+ D SG ++G+ FV + ++ AK
Sbjct: 54 PARGCEVFVGKIPRDCYEDELVPVFEKIGEIYELRLMMD-FSGSNRGYCFVMYTKRDDAK 112
Query: 160 RAIDELCSKDF-KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + KG+ + +S N RLF+G +PK+ E R ++ V GV +++I
Sbjct: 113 RAVRELNNFEIRKGRFLGVCLSVDNCRLFVGGIPKNKQRHEIRTEMKKVTEGV--VDVIV 170
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 171 YPSATDKAKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGHQIAVDWAEPEQEVDED--V 228
Query: 277 ASQVKALYVKNL----PENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S+VK LYV+NL E + + G V +V RD+ F+H+ ER
Sbjct: 229 MSKVKILYVRNLMLTTTEEFLETTFNQACGKEGAVERV------KKLRDYAFVHFKERDD 282
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
AL A++ I+G ++EV LA+P
Sbjct: 283 ALLAMEVINGQLIEGSMVEVTLAKP 307
>gi|124487289|ref|NP_001074543.1| APOBEC1 complementation factor [Mus musculus]
gi|341940157|sp|Q5YD48.2|A1CF_MOUSE RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
Length = 595
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 153/263 (58%), Gaps = 16/263 (6%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G E+FIG LP+D E++L LCE IG+++E+ L+ D + G ++G+AFV F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDVIV 168
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+++ +L G+ V WAEP+ D
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDED--T 226
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R A+
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
+A+K +DG +EV LA+P
Sbjct: 281 EAMKALNGKVLDGSPIEVTLAKP 303
>gi|73950238|ref|XP_866575.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 8
[Canis lupus familiaris]
gi|296207006|ref|XP_002750460.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Callithrix jacchus]
gi|297282471|ref|XP_002802271.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 3
[Macaca mulatta]
gi|332244974|ref|XP_003271638.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Nomascus leucogenys]
gi|332807933|ref|XP_003307912.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2 [Pan
troglodytes]
gi|402853338|ref|XP_003891353.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Papio anubis]
gi|426328277|ref|XP_004024926.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Gorilla gorilla gorilla]
gi|119615446|gb|EAW95040.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_a [Homo
sapiens]
gi|194390156|dbj|BAG61840.1| unnamed protein product [Homo sapiens]
Length = 494
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 151/261 (57%), Gaps = 9/261 (3%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
+VF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+ A+
Sbjct: 27 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 86
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L P
Sbjct: 87 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 146
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKAL 283
+NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A +VK L
Sbjct: 147 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA--KVKVL 204
Query: 284 YVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKY 343
+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 205 FVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGK 258
Query: 344 EIDGQVLEVALARPQTNKRTE 364
EI+G+ +E+ LA+P KR E
Sbjct: 259 EIEGEEIEIVLAKPPDKKRKE 279
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 22/183 (12%)
Query: 181 ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACA 240
E ++F+G +P+ E E + E GP D + L+ DP + +NRG+AF+ + A
Sbjct: 23 EAKIKVFVGKIPRDLYEDELVPLFEKAGPIWD-LRLMMDPLS-GQNRGYAFITFCGKEAA 80
Query: 241 DYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKEL 300
+ + S + P + A+ L+V ++P+N T + + E
Sbjct: 81 QEAVKLCDSYEIR------------PGKHLGVCISVANN--RLFVGSIPKNKTKENILEE 126
Query: 301 FQRHGE----VTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD--TEKYEIDGQVLEVAL 354
F + E V P K R F F+ Y + SA +A + + K ++ G V+ V
Sbjct: 127 FSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEW 186
Query: 355 ARP 357
A P
Sbjct: 187 ADP 189
>gi|296196678|ref|XP_002745943.1| PREDICTED: RNA-binding protein 47 isoform 2 [Callithrix jacchus]
Length = 525
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|344279161|ref|XP_003411359.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Loxodonta
africana]
Length = 524
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 69 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 127
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 128 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 187
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 188 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 245
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 246 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 299
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 300 LNGTELEGSCLEVTLAKP 317
>gi|405972362|gb|EKC37135.1| Heterogeneous nuclear ribonucleoprotein Q [Crassostrea gigas]
Length = 628
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 151/272 (55%), Gaps = 20/272 (7%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVF G +PKD E++L L E G+++++ L+ D + ++G+ F+ F +KE A+
Sbjct: 154 PPPGCEVFCGKIPKDVFEDELIPLFEKCGKIWDLRLMMDPLTQFNRGYCFITFCTKEGAE 213
Query: 160 RA--IDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE----KEFRKVIEDVGPGVDT 213
A +D K GK I+ ++S N RLF+GN+PKS ++ +EF K E + VD
Sbjct: 214 EATKLDNYAIK--PGKNIKVNISVANQRLFVGNIPKSKSKDEIMEEFSKKTEGL---VDV 268
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHS 273
I + +NRGFAF+ Y ++ A +++K+++ K+ V WA+P PD
Sbjct: 269 IIYRSAEKENQKNRGFAFLEYDSHKSASTAKRKLSTGRLKVWNCDVIVDWADPVDNPDDE 328
Query: 274 AAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSA 333
S+VK LYV+NL T +KE F G++ + +D+GFIH+ +R A
Sbjct: 329 --TMSKVKVLYVRNLTSEVTEDIMKEKFGEFGKIERA------KKVKDYGFIHFEDRDDA 380
Query: 334 LKAIKDTEKYEIDGQVLEVALARPQT-NKRTE 364
+KA++ +I +EV+LA+P + NK+ E
Sbjct: 381 IKAMQAMNGQKIGKLEIEVSLAKPPSENKKKE 412
>gi|397524564|ref|XP_003832260.1| PREDICTED: RNA-binding protein 47 isoform 3 [Pan paniscus]
Length = 524
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|148833511|ref|NP_061900.2| RNA-binding protein 47 isoform b [Homo sapiens]
Length = 524
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|109074069|ref|XP_001094904.1| PREDICTED: RNA-binding protein 47 isoform 3 [Macaca mulatta]
gi|114593728|ref|XP_001144637.1| PREDICTED: RNA-binding protein 47 isoform 2 [Pan troglodytes]
gi|402869220|ref|XP_003898664.1| PREDICTED: RNA-binding protein 47 isoform 3 [Papio anubis]
gi|426344166|ref|XP_004038646.1| PREDICTED: RNA-binding protein 47 isoform 4 [Gorilla gorilla
gorilla]
gi|119613373|gb|EAW92967.1| RNA-binding protein, isoform CRA_d [Homo sapiens]
gi|119613375|gb|EAW92969.1| RNA-binding protein, isoform CRA_d [Homo sapiens]
Length = 524
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|332219028|ref|XP_003258660.1| PREDICTED: RNA-binding protein 47 isoform 2 [Nomascus leucogenys]
Length = 524
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|225439260|ref|XP_002263631.1| PREDICTED: uncharacterized protein LOC100254786 [Vitis vinifera]
Length = 770
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 150/261 (57%), Gaps = 9/261 (3%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+E+FIGGL K A EED+R + E +GEV EV L+ + +G++KG+AF+ F AKRA+
Sbjct: 331 TEIFIGGLDKSAREEDIRKVFEEVGEVLEVRLMMNSKTGKNKGYAFLRFALASDAKRALA 390
Query: 164 ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQA 222
+ + GK + E N+ +F+GN+ K+W ++ K+++++G +D + ++ DP
Sbjct: 391 KYPKIEICGKQCGTAPVEGNDTIFLGNIDKNWKNEDVVKLLQEIGIDKIDKVTVMVDPSN 450
Query: 223 PSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKA 282
RNRGFAF+ N A + +K+ + V+WAEP + PD +VK
Sbjct: 451 IERNRGFAFLELETNKDAQLAYKKLQKKDVFGKHQNIKVAWAEPLNEPDEDEML--KVKT 508
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPG--KSGKRDFGFIHYAERSSALKAIKDT 340
+Y + +P + +++++ F++ GE+ VV S ++DF F+ Y R +AL+ I+
Sbjct: 509 VYAEYIPSSWEEEKVRDCFKKFGEIESVVLARNLRSSKRKDFAFVKYTTREAALECIESF 568
Query: 341 EK---YEIDGQV-LEVALARP 357
+ ++ + +V ++V+LA+P
Sbjct: 569 SREPLHDAECKVKVKVSLAKP 589
>gi|58477316|gb|AAH89622.1| APOBEC1 complementation factor [Mus musculus]
Length = 384
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 153/263 (58%), Gaps = 16/263 (6%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G E+FIG LP+D E++L LCE IG+++E+ L+ D + G ++G+AFV F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDVIV 168
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+++ +L G+ V WAEP+ D
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDED--T 226
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R A+
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
+A+K +DG +EV LA+P
Sbjct: 281 EAMKALNGKVLDGSPIEVTLAKP 303
>gi|81916405|sp|Q923K9.1|A1CF_RAT RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|15072439|gb|AAK50145.1| APOBEC-1 complementation factor long isoform [Rattus norvegicus]
Length = 594
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 153/263 (58%), Gaps = 16/263 (6%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDVIV 168
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+++ +L G+ V WAEP+ D
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDED--T 226
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R A+
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
+A+K +DG +EV LA+P
Sbjct: 281 EAMKALNGKVLDGSPIEVTLAKP 303
>gi|19173760|ref|NP_596891.1| APOBEC1 complementation factor [Rattus norvegicus]
gi|15077247|gb|AAK83095.1|AF290984_1 APOBEC-1 complementation factor short isoform [Rattus norvegicus]
Length = 586
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 153/263 (58%), Gaps = 16/263 (6%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDVIV 168
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+++ +L G+ V WAEP+ D
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDED--T 226
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R A+
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
+A+K +DG +EV LA+P
Sbjct: 281 EAMKALNGKVLDGSPIEVTLAKP 303
>gi|357161949|ref|XP_003579258.1| PREDICTED: uncharacterized protein LOC100834061 [Brachypodium
distachyon]
Length = 668
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 149/277 (53%), Gaps = 21/277 (7%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G+EVF+GGLP+ A+E LR++ P GE+ ++ ++KD++ G SKGF FV F +E A A
Sbjct: 69 GTEVFVGGLPRSATEGTLREVFSPCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYTAK 127
Query: 163 DELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK---- 218
+ + +GK + +S + LF GN+ K W+ +EF ++I V +++L
Sbjct: 128 RQKNGIELQGKRLAVDLSLDQDTLFFGNLCKEWSVEEFEELIHKTFKDVISVDLATASNL 187
Query: 219 DPQAPSR--NRGFAFVLYYNNACADYSRQKMTSANFKLDGNT-PTVSWAEPKSTPDHSAA 275
D R NRGFAFV + ++ A + + +F L G P ++WAE +S D A
Sbjct: 188 DSSTSKRRLNRGFAFVRFSSHGAAARVLRIGSRTDFLLGGVLHPAINWAERESNVD--AG 245
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALK 335
+++K +V NLP N LK+LF R GEV +V + G+ GFIH+ RS
Sbjct: 246 EMAKIKTAFVGNLPANVNEDYLKKLFGRFGEVVRVAV--SRKGEYPVGFIHFGSRSELDN 303
Query: 336 AIKDTEKYEIDGQ------VLEVALARPQT---NKRT 363
AIK+ + + G ++V++ARP NKR+
Sbjct: 304 AIKEMDGKTVSGPDRGPAFKIQVSVARPAVENDNKRS 340
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 264 AEPKSTPDHSAAAASQVKA--LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KR 320
A + P AA +VK ++V LP + T L+E+F GE+ + ++G +
Sbjct: 51 AANNAVPWGYVCAAGRVKGTEVFVGGLPRSATEGTLREVFSPCGEIVDLRIMKDQNGVSK 110
Query: 321 DFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358
FGF+ +AER A A + E+ G+ L V L+ Q
Sbjct: 111 GFGFVRFAERECAYTAKRQKNGIELQGKRLAVDLSLDQ 148
>gi|224097146|ref|XP_002310851.1| predicted protein [Populus trichocarpa]
gi|222853754|gb|EEE91301.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 140/246 (56%), Gaps = 7/246 (2%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
E+F+GGL +DA+EEDLR + E IGEV EV L K+ + +KG+AFV F +K KRA+ E
Sbjct: 27 EIFVGGLDRDATEEDLRKVFEKIGEVVEVRLHKNLSTNRNKGYAFVKFANKGHVKRALSE 86
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAP 223
+ + +GK + SE N+ LF+GN+ +WT++ R+ ++D G GV+ I ++ D Q
Sbjct: 87 MKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGVEGVENITVVPDAQHE 146
Query: 224 SRNRGFAFVLY--YNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
R+RGFAF+ + + +A Y R + F T V+++EP PD A QVK
Sbjct: 147 GRSRGFAFLEFACHTDAMLAYKRLQKPDVVFGHPERTAKVAFSEPIREPDPEIMA--QVK 204
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG--KRDFGFIHYAERSSALKAIKD 339
+++ LP + ++E + +GE+ ++V S ++DFGF+ ++ +A+ I+
Sbjct: 205 TIFLDGLPPHWDEDHVRECVKGYGEIVRIVLARNMSTAKRKDFGFVDFSTHEAAVACIEG 264
Query: 340 TEKYEI 345
E
Sbjct: 265 INNREF 270
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 73 DAVEDEDKRTASI--SEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEV 130
D V +RTA + SE +E +++A +F+ GLP E+ +R+ + GE+
Sbjct: 174 DVVFGHPERTAKVAFSEPIREPDPEIMA---QVKTIFLDGLPPHWDEDHVRECVKGYGEI 230
Query: 131 FEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF 170
+ L ++ + + K F FV F + E A I+ + +++F
Sbjct: 231 VRIVLARNMSTAKRKDFGFVDFSTHEAAVACIEGINNREF 270
>gi|354490876|ref|XP_003507582.1| PREDICTED: APOBEC1 complementation factor-like [Cricetulus griseus]
Length = 592
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 154/265 (58%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+++ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|148709767|gb|EDL41713.1| mCG1979, isoform CRA_a [Mus musculus]
Length = 369
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 153/263 (58%), Gaps = 16/263 (6%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G E+FIG LP+D E++L LCE IG+++E+ L+ D + G ++G+AFV F +K+ AK
Sbjct: 37 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEAK 95
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I
Sbjct: 96 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDVIV 153
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+++ +L G+ V WAEP+ D
Sbjct: 154 YPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDED--T 211
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R A+
Sbjct: 212 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAV 265
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
+A+K +DG +EV LA+P
Sbjct: 266 EAMKALNGKVLDGSPIEVTLAKP 288
>gi|355782924|gb|EHH64845.1| hypothetical protein EGM_18166 [Macaca fascicularis]
Length = 605
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 154/278 (55%), Gaps = 29/278 (10%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKM-------------TSANFKLDGNTPTV 261
I P A ++NRGFAFV Y ++ A +R+K+ T +L G+ V
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGIPAPPSLVTVTPGRIQLWGHPIAV 226
Query: 262 SWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGK 319
WAEP+ D S VK LYV+NL +T+ + +++ F + G V +V
Sbjct: 227 DWAEPEVEVDED--TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKI 278
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357
RD+ F+H++ R A++A+K +DG +EV LA+P
Sbjct: 279 RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 316
>gi|27462518|gb|AAO15465.1|AF442133_1 APOBEC-1 complementation factor 43 kDa variant [Rattus norvegicus]
Length = 383
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 153/263 (58%), Gaps = 16/263 (6%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDVIV 168
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+++ +L G+ V WAEP+ D
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDED--T 226
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R A+
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
+A+K +DG +EV LA+P
Sbjct: 281 EAMKALNGKVLDGSPIEVTLAKP 303
>gi|326923245|ref|XP_003207849.1| PREDICTED: APOBEC1 complementation factor-like [Meleagris
gallopavo]
Length = 590
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 151/261 (57%), Gaps = 17/261 (6%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+ A+ AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEARNAI 113
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIG-NVPKSWTEKEFRKVIEDVGPGVDTIELIKDP 220
+L + + + G+ + S N RLF+G + PK+ +E ++ V GV +++I P
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGDPPKTKKREEILAEMKKVTDGV--VDVIVYP 171
Query: 221 QAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D S
Sbjct: 172 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED--TMS 229
Query: 279 QVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
VK LYV+NL +TT + +++ F + G V +V RD+ F+H+ +R A+ A
Sbjct: 230 SVKILYVRNLMLSTTEETIEKEFNNIKQGAVERV------KKIRDYAFVHFNKREDAVDA 283
Query: 337 IKDTEKYEIDGQVLEVALARP 357
+K +DG +EV LA+P
Sbjct: 284 MKALNGKVLDGSPIEVTLAKP 304
>gi|27462520|gb|AAO15466.1|AF442134_1 APOBEC-1 complementation factor 45 kDa variant [Rattus norvegicus]
Length = 405
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 153/263 (58%), Gaps = 16/263 (6%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDVIV 168
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+++ +L G+ V WAEP+ D
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDED--T 226
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R A+
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
+A+K +DG +EV LA+P
Sbjct: 281 EAMKALNGKVLDGSPIEVTLAKP 303
>gi|345319914|ref|XP_001518200.2| PREDICTED: probable RNA-binding protein 46, partial
[Ornithorhynchus anatinus]
Length = 547
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 151/266 (56%), Gaps = 16/266 (6%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 60 GCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEAAQLAI 118
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
L + + + GK I +S N RLFIG +PK ++E +++V GV +++I P
Sbjct: 119 RILNNFEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKNVTEGV--VDVIVYPS 176
Query: 222 AP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
A S+NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +
Sbjct: 177 ATDKSKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQR 234
Query: 280 VKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
VK LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 235 VKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNRDDAMTAM 288
Query: 338 KDTEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 289 SVMNGKYIDGAGIEVTLAKPVNKENT 314
>gi|47209668|emb|CAF95095.1| unnamed protein product [Tetraodon nigroviridis]
Length = 677
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 143/261 (54%), Gaps = 12/261 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G E+F+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AK
Sbjct: 86 PQRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTEKHEAK 144
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL + + + G+ + S N RLFIG +PK+ +E + + V GV + +
Sbjct: 145 RAVRELNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVIDVIVYA 204
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 205 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VME 262
Query: 279 QVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
VK LYV+NL T+ + ++++F + G V +V RD+ F+H+ R A+ A
Sbjct: 263 TVKILYVRNLMMETSEETIRKVFSQWNPGCVERV------KKIRDYAFVHFNSRDDAVLA 316
Query: 337 IKDTEKYEIDGQVLEVALARP 357
+ E++G +EV LA+P
Sbjct: 317 MNQLNGTEVEGSCIEVTLAKP 337
>gi|7020253|dbj|BAA91049.1| unnamed protein product [Homo sapiens]
Length = 524
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 139/258 (53%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G +E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRTYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|343960931|dbj|BAK62055.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 497
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 153/265 (57%), Gaps = 14/265 (5%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
+VF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+ A+
Sbjct: 27 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 86
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTE----KEFRKVIEDVGPGVDTIELIKD 219
S + + GK + +S NNRLF+G++PK+ T+ +EF KV VD I L
Sbjct: 87 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVI-LYHQ 145
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A +
Sbjct: 146 PDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA--K 203
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 204 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 257
Query: 340 TEKYEIDGQVLEVALARPQTNKRTE 364
EI+G+ +E+ LA+P KR E
Sbjct: 258 MNGKEIEGEEIEIVLAKPPDKKRKE 282
>gi|313212894|emb|CBY36802.1| unnamed protein product [Oikopleura dioica]
Length = 542
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 158/294 (53%), Gaps = 15/294 (5%)
Query: 71 TEDAVEDEDKRTASISEDE----KEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEP 126
E ++ +RT + + E K + L P G+E+FIG LP+D E++L + E
Sbjct: 38 VEAKIKALCQRTGLVMKQENGQRKYTNPALTGKPEKGTEIFIGKLPRDLFEDELYPVLES 97
Query: 127 IGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF-KGKTIRCSMSETNNR 185
G FE+ ++ D + G ++GF FV ++++ + A+ + + + KG+ + S N R
Sbjct: 98 YGPAFELRMMLDFN-GNNRGFCFVTYQTRNESHAALKGINNLEIRKGRLLGACQSVDNCR 156
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP--SRNRGFAFVLYYNNACADYS 243
LF+G +PKS E + ++ V GV +++I P A S+NRGF+FV Y ++ A +
Sbjct: 157 LFVGGIPKSKKRDEIMEEMKKVTEGV--VDVIVYPSAADKSKNRGFSFVEYKDHKAAAMA 214
Query: 244 RQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQR 303
R+K+ +L G+ V WAEP+ + S VK LYV+NL +T+ L+ F
Sbjct: 215 RRKLMPGRIQLWGHQIAVDWAEPEIEVEES--VMETVKILYVRNLMLHTSEDTLEAAF-- 270
Query: 304 HGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357
+VT T RD+ F+H+ R +ALKA+K+ IDG ++EV LA+P
Sbjct: 271 -AKVTGKGTIERVKKIRDYAFVHFNTRDNALKAMKELNNGMIDGALVEVVLAKP 323
>gi|50346317|gb|AAT74917.1| APOBEC-1 stimulating protein [Mus musculus]
Length = 587
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 152/263 (57%), Gaps = 16/263 (6%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G E+FIG LP+D E++L LCE IG+++E+ L+ D + G ++G+AFV F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI +L + + + G+ + S N RLF G +PK+ +E ++ V GV +++I
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKVTEGV--VDVIV 168
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+++ +L G+ V WAEP+ D
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDED--T 226
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R A+
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
+A+K +DG +EV LA+P
Sbjct: 281 EAMKALNGKVLDGSPIEVTLAKP 303
>gi|50346315|gb|AAT74916.1| APOBEC-1 stimulating protein [Mus musculus]
Length = 595
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 152/263 (57%), Gaps = 16/263 (6%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G E+FIG LP+D E++L LCE IG+++E+ L+ D + G ++G+AFV F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI +L + + + G+ + S N RLF G +PK+ +E ++ V GV +++I
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKVTEGV--VDVIV 168
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+++ +L G+ V WAEP+ D
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDED--T 226
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R A+
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
+A+K +DG +EV LA+P
Sbjct: 281 EAMKALNGKVLDGSPIEVTLAKP 303
>gi|390358938|ref|XP_781163.2| PREDICTED: APOBEC1 complementation factor-like isoform 3
[Strongylocentrotus purpuratus]
Length = 567
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 143/263 (54%), Gaps = 12/263 (4%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G EVF+G +P+D E++L + IG+++E+ L+ D SG ++G+AFV + ++E
Sbjct: 52 AQPSRGCEVFVGKIPRDLFEDELVPVFMKIGKIYELRLMMDF-SGSNRGYAFVMYTTRED 110
Query: 158 AKRAIDELCSKDF-KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
K+A+ +L + + KG+ + S N RLF+G +PK+ ++E + V V + +
Sbjct: 111 GKKAVKQLNNYEIRKGRYLGVCPSVDNCRLFVGGIPKNKKQEEILAEMAKVTEQVVDVIV 170
Query: 217 IKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
++NRGFAFV Y N+ A +R+K+ +L G+ V WAEP+ D
Sbjct: 171 YPSINDKAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIMVDWAEPEQDVDEDVMR 230
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
VK LYV+NL +TT + + + F + G V +V RDF FIH+ R AL
Sbjct: 231 G--VKILYVRNLMLHTTEETIAKEFNAFKEGSVERV------KKLRDFAFIHFFTREDAL 282
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
A+ + +DG +EV LA+P
Sbjct: 283 NAMNAMDDPLLDGAKIEVVLAKP 305
>gi|390358934|ref|XP_003729368.1| PREDICTED: APOBEC1 complementation factor-like isoform 1
[Strongylocentrotus purpuratus]
Length = 548
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 143/263 (54%), Gaps = 12/263 (4%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G EVF+G +P+D E++L + IG+++E+ L+ D SG ++G+AFV + ++E
Sbjct: 52 AQPSRGCEVFVGKIPRDLFEDELVPVFMKIGKIYELRLMMDF-SGSNRGYAFVMYTTRED 110
Query: 158 AKRAIDELCSKDF-KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
K+A+ +L + + KG+ + S N RLF+G +PK+ ++E + V V + +
Sbjct: 111 GKKAVKQLNNYEIRKGRYLGVCPSVDNCRLFVGGIPKNKKQEEILAEMAKVTEQVVDVIV 170
Query: 217 IKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
++NRGFAFV Y N+ A +R+K+ +L G+ V WAEP+ D
Sbjct: 171 YPSINDKAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIMVDWAEPEQDVDEDVMR 230
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
VK LYV+NL +TT + + + F + G V +V RDF FIH+ R AL
Sbjct: 231 G--VKILYVRNLMLHTTEETIAKEFNAFKEGSVERV------KKLRDFAFIHFFTREDAL 282
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
A+ + +DG +EV LA+P
Sbjct: 283 NAMNAMDDPLLDGAKIEVVLAKP 305
>gi|410915937|ref|XP_003971443.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Takifugu rubripes]
Length = 598
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 140/266 (52%), Gaps = 44/266 (16%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G+E+F+G +P+D E++L L E G ++++ L+ D SG ++G+AFV F SKE A+
Sbjct: 158 PPVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLCNNHEIRPGKQIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVILYL 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
PQ S+NRGF F+ Y DH AA
Sbjct: 278 QPQDKSKNRGFCFLEY-----------------------------------EDHKTAA-- 300
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
QVK L+V+NL + T + L++ F +G + +V +D+ FIH+ ER A+KA++
Sbjct: 301 QVKVLFVRNLANSVTEEILEKSFSEYGNLERV------KKLKDYAFIHFEERDGAVKALE 354
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ E++G+ +E+ A+P KR E
Sbjct: 355 EMNGKELEGEPIEIVFAKPPDQKRKE 380
>gi|196005657|ref|XP_002112695.1| hypothetical protein TRIADDRAFT_2319 [Trichoplax adhaerens]
gi|190584736|gb|EDV24805.1| hypothetical protein TRIADDRAFT_2319, partial [Trichoplax
adhaerens]
Length = 288
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 138/264 (52%), Gaps = 20/264 (7%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP E++IG +P DA E++L L + G+++E+ L+ D SG ++G+AF+++ +KE A
Sbjct: 31 PPQDCEIYIGKIPHDALEDELIPLLQTCGKIYELRLMIDPASGHNRGYAFLSYTTKEAAN 90
Query: 160 RAIDELCSKDFKGKTIR------CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
+ C + + G +IR S N RLFI +PK ++E + G+
Sbjct: 91 Q-----CVRRYHGYSIRKDKPLTVIHSTPNVRLFISPIPKYMNKEEIYNKFSKLSDGLTE 145
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTP-DH 272
+ + DP A + RGFAF+ Y ++ A Y+R+K+ + L G V WAE P DH
Sbjct: 146 VIVYPDPDAKDKIRGFAFLEYVDHKAATYARRKLITDTVSLSGKVINVEWAESSKEPKDH 205
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
++VK +Y N+ E+ T L F ++G + ++ D+ FI +A R S
Sbjct: 206 --VVGNKVKEVYCGNIAEHITEDTLNTAFLQYGSIERI------KKLHDYAFICFASRES 257
Query: 333 ALKAIKDTEKYEIDGQVLEVALAR 356
ALKAI+ I+G ++V LA+
Sbjct: 258 ALKAIEGVRGTVINGCKVDVQLAK 281
>gi|50346319|gb|AAT74918.1| truncated APOBEC-1 stimulating protein [Mus musculus]
Length = 384
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 152/263 (57%), Gaps = 16/263 (6%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G E+FIG LP+D E++L LCE IG+++E+ L+ D + G ++G+AFV F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI +L + + + G+ + S N RLF G +PK+ +E ++ V GV +++I
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKVTEGV--VDVIV 168
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+++ +L G+ V WAEP+ D
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDED--T 226
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R A+
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
+A+K +DG +EV LA+P
Sbjct: 281 EAMKALNGKVLDGSPIEVTLAKP 303
>gi|326507886|dbj|BAJ86686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 751
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 157/287 (54%), Gaps = 10/287 (3%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
E+F+GGL ++A EED+R + +G+V EV L KD + ++KGFAFV F +KE RA+ E
Sbjct: 245 EIFVGGLDREAVEEDIRKVFSQVGDVVEVRLHKDFSTSKNKGFAFVRFANKEQVARALAE 304
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAP 223
+ + GK + SE N+ LF+ N+ +WT++ +K + D G GV ++ L+ D Q
Sbjct: 305 MKNPMIHGKRCGVAASEDNDTLFLCNICNTWTKEAIKKRLLDYGVEGVQSLTLVPDTQNE 364
Query: 224 SRNRGFAFVLY--YNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
++RGFAF+ + + +A + R + A F T V++AEP D A +QVK
Sbjct: 365 GQSRGFAFLEFSCHADAMLAFKRLQQPDALFGHPERTAKVAFAEPIKEAD--AEVMAQVK 422
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG--KRDFGFIHYAERSSALKAIKD 339
++++ LP +++K F+ +G + +VV S + DFGF++++ AL I+
Sbjct: 423 SVFINGLPPYWDEERVKNRFKAYGLIERVVLARNMSSAKRNDFGFVNFSTHEEALACIEA 482
Query: 340 TEKYEI--DGQV-LEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGY 383
T E+ DG+ L+V + +++ V +G G P +G+
Sbjct: 483 TNNTELGDDGKAKLKVRVRLSNPLPKSQAVKGEMSGGFRIGHPGSGF 529
>gi|390358936|ref|XP_003729369.1| PREDICTED: APOBEC1 complementation factor-like isoform 2
[Strongylocentrotus purpuratus]
Length = 487
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 143/263 (54%), Gaps = 12/263 (4%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G EVF+G +P+D E++L + IG+++E+ L+ D SG ++G+AFV + ++E
Sbjct: 52 AQPSRGCEVFVGKIPRDLFEDELVPVFMKIGKIYELRLMMDF-SGSNRGYAFVMYTTRED 110
Query: 158 AKRAIDELCSKDF-KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
K+A+ +L + + KG+ + S N RLF+G +PK+ ++E + V V + +
Sbjct: 111 GKKAVKQLNNYEIRKGRYLGVCPSVDNCRLFVGGIPKNKKQEEILAEMAKVTEQVVDVIV 170
Query: 217 IKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
++NRGFAFV Y N+ A +R+K+ +L G+ V WAEP+ D
Sbjct: 171 YPSINDKAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIMVDWAEPEQDVDEDVMR 230
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
VK LYV+NL +TT + + + F + G V +V RDF FIH+ R AL
Sbjct: 231 G--VKILYVRNLMLHTTEETIAKEFNAFKEGSVERV------KKLRDFAFIHFFTREDAL 282
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
A+ + +DG +EV LA+P
Sbjct: 283 NAMNAMDDPLLDGAKIEVVLAKP 305
>gi|255569500|ref|XP_002525717.1| conserved hypothetical protein [Ricinus communis]
gi|223535017|gb|EEF36700.1| conserved hypothetical protein [Ricinus communis]
Length = 1034
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 147/261 (56%), Gaps = 10/261 (3%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+E+FIGGL DA EED+R + +GE+ E+ LV + +G++K FAF+ + S AK+A++
Sbjct: 499 TEIFIGGLSTDAREEDIRKVFGAVGEIVELRLVTNSKTGKNKRFAFLRYSSAADAKKALE 558
Query: 164 ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQA 222
+ + GK + E N+ +F+GN+ K WT + K+++++G +D + ++ DP
Sbjct: 559 KYAKVEICGKQCAVAPVEGNDTIFLGNIDKKWTNGDVIKLLQEIGIEKIDKVIVMTDPSN 618
Query: 223 PSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKA 282
RNRGFAFV + A + +K+ + N V+WAEP S PD +VK+
Sbjct: 619 VGRNRGFAFVELETHKDAQIAFKKLHKKDLGKLQNI-KVAWAEPLSEPDEEELL--KVKS 675
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPG--KSGKRDFGFIHYAERSSALKAIK-- 338
+Y + LP + ++L+ F + GE+ +V S ++DF FI+++ R +AL I+
Sbjct: 676 VYAEYLPPSWDEEKLRSYFTKFGEIENIVLSRNLHSSRRKDFAFINFSTREAALACIESF 735
Query: 339 --DTEKYEIDGQVLEVALARP 357
+T E ++V+LA+P
Sbjct: 736 YHETLTNEGSQVNVKVSLAKP 756
>gi|260812203|ref|XP_002600810.1| hypothetical protein BRAFLDRAFT_229350 [Branchiostoma floridae]
gi|229286100|gb|EEN56822.1| hypothetical protein BRAFLDRAFT_229350 [Branchiostoma floridae]
Length = 477
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 143/261 (54%), Gaps = 12/261 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF+G LP+D E++L + E IG+++EV L+ D SG ++G+AFV + +KE AK
Sbjct: 53 PQRGCEVFVGKLPRDLYEDELVPVFETIGKIYEVRLMMD-FSGSNRGYAFVMYTNKEDAK 111
Query: 160 RAIDELCSKDF-KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ +L + + KG+ + S N RLF+G +PK+ + E + + V GV + +
Sbjct: 112 RAVKQLNNYEIRKGRLLGVCPSVDNCRLFVGGIPKNKKKHEILEEMSKVTEGVVNVIVYP 171
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+
Sbjct: 172 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGHQIAVDWAEPEPE--VDEEVMR 229
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGE--VTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
+VK LYV+NL TT +K+ F+ E VT+V RD+ F+HY R A+ A
Sbjct: 230 KVKVLYVRNLMVTTTEDDIKQAFEVGEEETVTRV------KKIRDYAFVHYKTREDAIAA 283
Query: 337 IKDTEKYEIDGQVLEVALARP 357
+ ++G LEV A+P
Sbjct: 284 MTAMNGSTLEGAKLEVTFAKP 304
>gi|147905061|ref|NP_001086049.1| APOBEC1 complementation factor [Xenopus laevis]
gi|49522081|gb|AAH74127.1| MGC81834 protein [Xenopus laevis]
Length = 584
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 189/382 (49%), Gaps = 38/382 (9%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G E+FIG LP+D E++L LCE G+++E+ ++ D + G ++G+AFV F +++ A+ A
Sbjct: 54 RGCEIFIGKLPRDLFEDELIPLCEKTGKIYEMRMMMDFN-GNNRGYAFVTFTNRQDARDA 112
Query: 162 IDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDP 220
I +L + + + G+ + S N RLF+G +PK+ +E + V GV +++I P
Sbjct: 113 IKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKRREEILAEMRKVTDGV--LDVIVYP 170
Query: 221 QAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D S
Sbjct: 171 SAADKAKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED--TMS 228
Query: 279 QVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
VK LYV+NL T + +++ F + G V +V RD+ F+H+ R+ A+ A
Sbjct: 229 SVKILYVRNLMLTTAEETIEKEFSSVKPGSVERV------KKIRDYAFVHFRNRADAVDA 282
Query: 337 IKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYGSVST 396
+ IDG +EV LA+P +K + Y+ G + + Y G Y +
Sbjct: 283 MNVLNGKIIDGSPIEVTLAKP-VDKESYVRYTRGTGGRGAAI-QGEYTYTIGHVYDPTTA 340
Query: 397 GLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPRRVE- 455
LG P+ Y PA +P + GYV + V+ PP R
Sbjct: 341 YLGA--------PVFYAP---PAYTAAIPSIQFPPVKGYVNNRSLVR----PPSVRVGAA 385
Query: 456 --RGPGGRG--ASSGGSDGSSG 473
RG GGRG A +G G +G
Sbjct: 386 GVRGLGGRGYLAYTGLGRGYTG 407
>gi|301606991|ref|XP_002933097.1| PREDICTED: probable RNA-binding protein 46-like [Xenopus (Silurana)
tropicalis]
Length = 533
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 144/257 (56%), Gaps = 12/257 (4%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L L E G+++E L+ + SGE++G+AFV + +KE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPLFERAGKIYEFRLMME-FSGENRGYAFVMYTNKEEALLAIR 119
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I S N RLFIG++P+ +++ + ++ V GV + +
Sbjct: 120 MLNNYEIRQGKFIGVCASLDNCRLFIGSIPQEKRKEDILEEMKKVTEGVMDVIVCPSATD 179
Query: 223 PSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKA 282
++NRGFAFV Y ++ A +R+K+ F+L G T V WA+P+ D +VK
Sbjct: 180 KTKNRGFAFVTYESHRAAAMARRKLIPGTFQLWGRTIKVDWADPEKEVDEE--TMQKVKV 237
Query: 283 LYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
LYV+NL +TT + +K F R+ G V +V RD+ F+H+ R A+ A+ +
Sbjct: 238 LYVRNLMMSTTEETIKAEFNRYKPGVVERV------KKIRDYAFVHFFRRDYAIAAMSEM 291
Query: 341 EKYEIDGQVLEVALARP 357
IDG +EV LA+P
Sbjct: 292 NGRLIDGARIEVTLAKP 308
>gi|148683481|gb|EDL15428.1| mCG21951 [Mus musculus]
Length = 468
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 149/265 (56%), Gaps = 16/265 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 119
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSA 177
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +V
Sbjct: 178 TDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRV 235
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFSKFKPGAVERV------KKLRDYAFVHFFHREDAVAAMS 289
Query: 339 DTEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>gi|332217539|ref|XP_003257916.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Nomascus
leucogenys]
Length = 470
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 149/265 (56%), Gaps = 16/265 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 119
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSA 177
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +V
Sbjct: 178 TDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRV 235
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFKLGAVERV------KKLRDYAFVHFFNREDAVAAMS 289
Query: 339 DTEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>gi|22327128|ref|NP_198191.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332006412|gb|AED93795.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 180
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 111/198 (56%), Gaps = 59/198 (29%)
Query: 247 MTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGE 306
M++ +FKLD N PTVSWAE +S + ++ASQVKALY+KNLP + T ++LK LF+ HG+
Sbjct: 1 MSNPSFKLDDNAPTVSWAESRSGGE-GDSSASQVKALYIKNLPRDITQERLKALFEHHGK 59
Query: 307 VTKVVTPPGKSGKRD--FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ KVV PP K GK D +GF+HYAER+S ++A+K+TE+YEID
Sbjct: 60 ILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEID------------------ 101
Query: 365 GVYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMV 424
A + L HAG G AAG GM M+
Sbjct: 102 ------ASAYSQPLMHAG----------------GHAAG----------------GMSMM 123
Query: 425 PMVLPDGRIGYVLQQPGV 442
P++LPDGRI YVLQQPG+
Sbjct: 124 PIMLPDGRIRYVLQQPGL 141
>gi|149048270|gb|EDM00846.1| similar to hypothetical protein MGC27016 (predicted) [Rattus
norvegicus]
Length = 468
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 149/265 (56%), Gaps = 16/265 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 119
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSA 177
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +V
Sbjct: 178 TDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRV 235
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMS 289
Query: 339 DTEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>gi|332820527|ref|XP_003310593.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Pan
troglodytes]
Length = 533
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 149/265 (56%), Gaps = 16/265 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 119
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSA 177
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +V
Sbjct: 178 TDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRV 235
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMS 289
Query: 339 DTEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>gi|332217537|ref|XP_003257915.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Nomascus
leucogenys]
Length = 533
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 149/265 (56%), Gaps = 16/265 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 119
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSA 177
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +V
Sbjct: 178 TDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRV 235
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFKLGAVERV------KKLRDYAFVHFFNREDAVAAMS 289
Query: 339 DTEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>gi|114596513|ref|XP_528865.2| PREDICTED: probable RNA-binding protein 46 isoform 2 [Pan
troglodytes]
gi|397504054|ref|XP_003822624.1| PREDICTED: probable RNA-binding protein 46 [Pan paniscus]
gi|402870690|ref|XP_003899339.1| PREDICTED: probable RNA-binding protein 46 [Papio anubis]
Length = 470
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 149/265 (56%), Gaps = 16/265 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 119
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSA 177
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +V
Sbjct: 178 TDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRV 235
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMS 289
Query: 339 DTEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>gi|344239872|gb|EGV95975.1| putative RNA-binding protein 46 [Cricetulus griseus]
Length = 503
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 149/265 (56%), Gaps = 16/265 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 75 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 133
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 134 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSA 191
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +V
Sbjct: 192 TDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRV 249
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 250 KVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMS 303
Query: 339 DTEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 304 VMNGKCIDGASIEVTLAKPVNKENT 328
>gi|119625308|gb|EAX04903.1| hypothetical protein MGC27016, isoform CRA_b [Homo sapiens]
gi|193785107|dbj|BAG54260.1| unnamed protein product [Homo sapiens]
Length = 470
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 149/265 (56%), Gaps = 16/265 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 119
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSA 177
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +V
Sbjct: 178 TDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRV 235
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMS 289
Query: 339 DTEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>gi|301787307|ref|XP_002929069.1| PREDICTED: probable RNA-binding protein 46-like [Ailuropoda
melanoleuca]
gi|281342850|gb|EFB18434.1| hypothetical protein PANDA_019160 [Ailuropoda melanoleuca]
Length = 533
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 149/265 (56%), Gaps = 16/265 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 119
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSA 177
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +V
Sbjct: 178 TDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRV 235
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMS 289
Query: 339 DTEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>gi|296195353|ref|XP_002745373.1| PREDICTED: probable RNA-binding protein 46 [Callithrix jacchus]
Length = 485
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 149/265 (56%), Gaps = 16/265 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 119
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSA 177
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +V
Sbjct: 178 TDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRV 235
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFKPGTVERV------KKLRDYAFVHFFNREDAVAAMS 289
Query: 339 DTEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 290 VMNGKFIDGASIEVTLAKPVNKENT 314
>gi|208973286|ref|NP_001129189.1| probable RNA-binding protein 46 [Rattus norvegicus]
Length = 533
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 149/264 (56%), Gaps = 16/264 (6%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSAT 178
Query: 224 --SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +VK
Sbjct: 179 DKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRVK 236
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSV 290
Query: 340 TEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 291 MNGKCIDGASIEVTLAKPVNKENT 314
>gi|300794578|ref|NP_001179648.1| probable RNA-binding protein 46 [Bos taurus]
gi|296478817|tpg|DAA20932.1| TPA: RNA binding motif protein 46 [Bos taurus]
gi|440907847|gb|ELR57939.1| Putative RNA-binding protein 46 [Bos grunniens mutus]
Length = 533
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 149/265 (56%), Gaps = 16/265 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 119
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSA 177
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +V
Sbjct: 178 TDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRV 235
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFKPGSVERV------KKLRDYAFVHFFNREDAVAAMS 289
Query: 339 DTEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>gi|354474595|ref|XP_003499516.1| PREDICTED: probable RNA-binding protein 46 [Cricetulus griseus]
Length = 533
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 149/264 (56%), Gaps = 16/264 (6%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSAT 178
Query: 224 --SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +VK
Sbjct: 179 DKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRVK 236
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSV 290
Query: 340 TEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 291 MNGKCIDGASIEVTLAKPVNKENT 314
>gi|118404976|ref|NP_001072501.1| probable RNA-binding protein 46 [Xenopus (Silurana) tropicalis]
gi|123905873|sp|Q0P4R6.1|RBM46_XENTR RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
gi|112419351|gb|AAI21935.1| RNA-binding protein 46 [Xenopus (Silurana) tropicalis]
Length = 534
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 148/259 (57%), Gaps = 16/259 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E+ L L G+++E L+ + SGE++G+AFV + +KE A AI
Sbjct: 61 CEVFVGKIPRDMYEDKLVPLFARAGKIYEFRLMME-FSGENRGYAFVMYTNKEEALLAIR 119
Query: 164 ELCSKDF-KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + +GK I +S N RLFIG++P+ ++E + ++ V GV +++I P A
Sbjct: 120 MLNNYEICQGKFIGVCVSLDNCRLFIGSIPQEKRKEEILEEMKKVTEGV--MDVIVYPSA 177
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV+Y ++ A +R+K+ F+L G+T V+WA P+ D +V
Sbjct: 178 TDKTKNRGFAFVMYESHRAAAMARRKLIPGPFQLWGHTIKVAWASPEKEVDEE--TMQKV 235
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K LYV+NL +TT + +K F R+ G V +V RD+ F+H+ R A+ A+
Sbjct: 236 KVLYVRNLMMSTTEETIKAEFNRYKPGVVERV------KKIRDYAFVHFFRRDYAIAAMS 289
Query: 339 DTEKYEIDGQVLEVALARP 357
IDG +EV LA+P
Sbjct: 290 VMNGRLIDGARIEVTLAKP 308
>gi|21450675|ref|NP_659416.1| probable RNA-binding protein 46 [Homo sapiens]
gi|74760436|sp|Q8TBY0.1|RBM46_HUMAN RecName: Full=Probable RNA-binding protein 46; AltName:
Full=Cancer/testis antigen 68; Short=CT68; AltName:
Full=RNA-binding motif protein 46
gi|20306894|gb|AAH28588.1| RNA binding motif protein 46 [Homo sapiens]
gi|119625307|gb|EAX04902.1| hypothetical protein MGC27016, isoform CRA_a [Homo sapiens]
gi|325463385|gb|ADZ15463.1| RNA binding motif protein 46 [synthetic construct]
Length = 533
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 149/265 (56%), Gaps = 16/265 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 119
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSA 177
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +V
Sbjct: 178 TDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRV 235
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMS 289
Query: 339 DTEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>gi|403272285|ref|XP_003928003.1| PREDICTED: probable RNA-binding protein 46 [Saimiri boliviensis
boliviensis]
Length = 533
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 149/264 (56%), Gaps = 16/264 (6%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA- 222
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSAI 178
Query: 223 -PSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +VK
Sbjct: 179 DKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRVK 236
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSV 290
Query: 340 TEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 291 MNGKFIDGASIEVTLAKPVNKENT 314
>gi|355687676|gb|EHH26260.1| hypothetical protein EGK_16179 [Macaca mulatta]
gi|355749630|gb|EHH54029.1| hypothetical protein EGM_14765 [Macaca fascicularis]
Length = 533
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 149/265 (56%), Gaps = 16/265 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 119
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSA 177
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +V
Sbjct: 178 TDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRV 235
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMS 289
Query: 339 DTEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>gi|311262420|ref|XP_003129173.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Sus scrofa]
Length = 533
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 149/264 (56%), Gaps = 16/264 (6%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSAT 178
Query: 224 --SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +VK
Sbjct: 179 DKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRVK 236
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSV 290
Query: 340 TEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 291 MNGKCIDGASIEVTLAKPVNKENT 314
>gi|226423939|ref|NP_001139800.1| probable RNA-binding protein 46 [Mus musculus]
gi|215275534|sp|P86049.1|RBM46_MOUSE RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
Length = 533
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 149/264 (56%), Gaps = 16/264 (6%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSAT 178
Query: 224 --SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +VK
Sbjct: 179 DKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRVK 236
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 237 VLYVRNLMISTTEETIKAEFSKFKPGAVERV------KKLRDYAFVHFFHREDAVAAMSV 290
Query: 340 TEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 291 MNGKCIDGASIEVTLAKPVNKENT 314
>gi|344291747|ref|XP_003417592.1| PREDICTED: probable RNA-binding protein 46 [Loxodonta africana]
Length = 533
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 149/264 (56%), Gaps = 16/264 (6%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSAT 178
Query: 224 --SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +VK
Sbjct: 179 DKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRVK 236
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSI 290
Query: 340 TEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 291 MNGKCIDGASIEVTLAKPVNKENT 314
>gi|297293557|ref|XP_001092238.2| PREDICTED: probable RNA-binding protein 46 [Macaca mulatta]
Length = 709
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 149/265 (56%), Gaps = 16/265 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 237 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 295
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 296 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSA 353
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +V
Sbjct: 354 TDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRV 411
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 412 KVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMS 465
Query: 339 DTEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 466 VMNGKCIDGASIEVTLAKPVNKENT 490
>gi|431901230|gb|ELK08296.1| Putative RNA-binding protein 46 [Pteropus alecto]
Length = 699
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 149/265 (56%), Gaps = 16/265 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 287 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 345
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 346 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSA 403
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +V
Sbjct: 404 TDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRV 461
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 462 KVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMS 515
Query: 339 DTEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 516 VMNGKCIDGASIEVTLAKPVNKENT 540
>gi|426246909|ref|XP_004017229.1| PREDICTED: probable RNA-binding protein 46 [Ovis aries]
Length = 533
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 149/264 (56%), Gaps = 16/264 (6%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKRKEEILDEMKKVTEGV--VDVIVYPSAT 178
Query: 224 --SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +VK
Sbjct: 179 DKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRVK 236
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGTVERV------KKLRDYAFVHFFNREDAVAAMSV 290
Query: 340 TEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 291 MNGKCIDGASIEVTLAKPVNKENT 314
>gi|395834586|ref|XP_003790279.1| PREDICTED: probable RNA-binding protein 46 [Otolemur garnettii]
Length = 533
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 149/264 (56%), Gaps = 16/264 (6%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSAT 178
Query: 224 --SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +VK
Sbjct: 179 DKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRVK 236
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSV 290
Query: 340 TEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 291 MNGKCIDGASIEVTLAKPVNKENT 314
>gi|126331293|ref|XP_001366441.1| PREDICTED: probable RNA-binding protein 46-like [Monodelphis
domestica]
gi|395542497|ref|XP_003773166.1| PREDICTED: probable RNA-binding protein 46 [Sarcophilus harrisii]
Length = 533
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 149/264 (56%), Gaps = 16/264 (6%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSAT 178
Query: 224 --SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +VK
Sbjct: 179 DKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRVK 236
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSV 290
Query: 340 TEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 291 MNGKCIDGASIEVTLAKPVNKEST 314
>gi|297674548|ref|XP_002815285.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Pongo abelii]
Length = 533
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 149/265 (56%), Gaps = 16/265 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 119
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSA 177
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +V
Sbjct: 178 TDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRV 235
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMS 289
Query: 339 DTEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>gi|57096861|ref|XP_532699.1| PREDICTED: probable RNA-binding protein 46 [Canis lupus familiaris]
Length = 533
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 149/265 (56%), Gaps = 16/265 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 119
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSA 177
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +V
Sbjct: 178 TDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRV 235
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMS 289
Query: 339 DTEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>gi|335293716|ref|XP_003357034.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Sus scrofa]
Length = 485
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 149/265 (56%), Gaps = 16/265 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 119
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSA 177
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +V
Sbjct: 178 TDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRV 235
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMS 289
Query: 339 DTEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>gi|410956690|ref|XP_003984972.1| PREDICTED: probable RNA-binding protein 46 [Felis catus]
Length = 533
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 149/264 (56%), Gaps = 16/264 (6%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSAT 178
Query: 224 --SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +VK
Sbjct: 179 DKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRVK 236
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSV 290
Query: 340 TEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 291 MNGKCIDGASIEVTLAKPVNKEST 314
>gi|426364774|ref|XP_004049471.1| PREDICTED: APOBEC1 complementation factor [Gorilla gorilla gorilla]
Length = 548
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 143/246 (58%), Gaps = 16/246 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 278
Query: 333 ALKAIK 338
A++A+K
Sbjct: 279 AVEAMK 284
>gi|158706381|sp|Q4R2Z0.2|RBM46_MACFA RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
Length = 485
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 149/265 (56%), Gaps = 16/265 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 119
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSA 177
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +V
Sbjct: 178 TDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRV 235
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMS 289
Query: 339 DTEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>gi|327274033|ref|XP_003221783.1| PREDICTED: probable RNA-binding protein 46-like [Anolis
carolinensis]
Length = 514
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 149/264 (56%), Gaps = 16/264 (6%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSAT 178
Query: 224 --SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +VK
Sbjct: 179 DKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRVK 236
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNRDDAVAAMSV 290
Query: 340 TEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 291 MNGKCIDGASIEVTLAKPVNKEST 314
>gi|223649326|gb|ACN11421.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 628
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 139/255 (54%), Gaps = 8/255 (3%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F SK+
Sbjct: 161 AQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFINFCSKDA 220
Query: 158 AKRAIDELCSKDFKG-KTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
A A+ + + + K + +S NNRLF+G++PK+ T + V G+ + L
Sbjct: 221 AAEAVKLCDNYEIRSRKHLGVCISVANNRLFVGSIPKNKTRESILDDFSKVTEGLQEVIL 280
Query: 217 IKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P NRGF F+ Y ++ A +R+ + S + GN TV WA P + D +
Sbjct: 281 YHQPDDKETNRGFCFLEYEDHKSAAQARRCLMSGKVMVWGNPVTVEWANPVTERD-TDVM 339
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
A+Q K L+V+ L + T + L + F G++ +V +D+ F+H+ +R +A+KA
Sbjct: 340 ANQAKVLFVRKLATSVTEELLVKTFSAFGKLERVYK------LKDYAFVHFEDRDAAVKA 393
Query: 337 IKDTEKYEIDGQVLE 351
+ D E+ G+ +E
Sbjct: 394 MVDMNGKELGGEAIE 408
>gi|194380344|dbj|BAG63939.1| unnamed protein product [Homo sapiens]
Length = 485
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 149/265 (56%), Gaps = 16/265 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 119
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSA 177
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +V
Sbjct: 178 TDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRV 235
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMS 289
Query: 339 DTEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>gi|313239224|emb|CBY14179.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 143/267 (53%), Gaps = 16/267 (5%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVFIG +P+D E++L L E G V++ L+ D +G+++G+AF++F A+
Sbjct: 164 PAVGAEVFIGKIPRDMFEDELVPLFEKCGLVWDFRLMMDPMTGQNRGYAFLSFVELSAAR 223
Query: 160 RAIDELCSKDFKGKT-IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
+ ++ + + K + ++S+ NNRLF+G++PK+ T++E G+ + L
Sbjct: 224 KCVEMYDRFEIRSKRELHVTISQPNNRLFVGSIPKTKTKQEILDEFSKHTTGLTDVILYY 283
Query: 219 DPQAPS------RNRGFAFVLYYNNACADYSRQKMTSANFKLDGN-TPTVSWAEPKSTPD 271
+ + +NRGF F+ Y + A +R+++ S K N TV WA+P +TP
Sbjct: 284 QVEEKNKGSGLQKNRGFCFLEYETHQAASQARRRLLSGRVKAWNNLIVTVDWADPINTP- 342
Query: 272 HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERS 331
+ +VK LYVKNL + + + F GE+ KV +D+ F+H+ R
Sbjct: 343 -ADDIMDKVKVLYVKNLATCVSEDIVSQTFAAFGEIEKV------KKLKDYAFVHFKNRD 395
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQ 358
A A+ + + ++GQ +E+ LA+PQ
Sbjct: 396 EARSAMTELNGFNLEGQCIEICLAKPQ 422
>gi|194208379|ref|XP_001500866.2| PREDICTED: probable RNA-binding protein 46 [Equus caballus]
Length = 532
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 149/264 (56%), Gaps = 16/264 (6%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
L + + + G+ I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 121 LNNYEIRPGRFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSAT 178
Query: 224 --SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +VK
Sbjct: 179 DKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRVK 236
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 237 VLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSV 290
Query: 340 TEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 291 MNGKCIDGASIEVTLAKPVNKENT 314
>gi|348582238|ref|XP_003476883.1| PREDICTED: probable RNA-binding protein 46 [Cavia porcellus]
Length = 540
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 149/264 (56%), Gaps = 16/264 (6%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 68 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 126
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 127 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSAT 184
Query: 224 --SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +VK
Sbjct: 185 DKTKNRGFAFVKYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRVK 242
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
L+V+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 243 VLFVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSV 296
Query: 340 TEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 297 MSGKCIDGASIEVTLAKPVNKEST 320
>gi|402595099|gb|EJW89025.1| heterogeneous nuclear ribonucleoprotein Q [Wuchereria bancrofti]
Length = 688
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 134/239 (56%), Gaps = 11/239 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G E++IG +PK+ E+ L L E +G+++++ L+ D +G ++G+AF+ + K A A
Sbjct: 291 GHEIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTAAYEAA 350
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+ + GK ++ ++S N RLFIGN+PKS +++E ++ GV + P
Sbjct: 351 KKFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPD 410
Query: 222 A--PSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
A +NRGF F+ + ++ A +++K+ + + + V WAE + PD A +
Sbjct: 411 AGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVDWAEQQEEPDEETMA--K 468
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
VK LYV+NL E T +QLKE+F +GEV + RD+ FIH+ ER A+KA++
Sbjct: 469 VKVLYVRNLKEAVTEEQLKEMFSAYGEVDRA------KKIRDYAFIHFMEREPAIKAME 521
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 34/164 (20%)
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
+ + ++IG +PK E + ED+G D + L+ DP RNRG+AF+ Y + A
Sbjct: 290 SGHEIYIGKIPKEVYEDTLITLFEDMGKIWD-LRLMMDPLT-GRNRGYAFLTYCDKTAAY 347
Query: 242 YSRQK------MTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTK 295
+ +K M N K++ VS A + L++ N+P++ + +
Sbjct: 348 EAAKKFDGYEIMPGKNLKVN-----VSVANTR---------------LFIGNIPKSKSKE 387
Query: 296 QLKELFQRHGE-VTKVVT----PPGKSGK-RDFGFIHYAERSSA 333
++ F+ H E VT + G+S K R F F+ + + +A
Sbjct: 388 EILAEFKEHTEGVTDCIIYSSPDAGESRKNRGFCFLDFCDHKTA 431
>gi|351713895|gb|EHB16814.1| Putative RNA-binding protein 46 [Heterocephalus glaber]
Length = 528
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 153/279 (54%), Gaps = 17/279 (6%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + KE A+ AI
Sbjct: 60 GCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTMKEEAQLAI 118
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P
Sbjct: 119 RILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPS 176
Query: 222 AP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
A ++NRGFAFV Y ++ +R+K+ F+L G+T V WA+P+ D +
Sbjct: 177 ATDKTKNRGFAFVKYESHREPAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQR 234
Query: 280 VKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
VK L+V+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 235 VKVLFVRNLMISTTEETIKGEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAM 288
Query: 338 KDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPS 376
IDG +EV LA+P NK + G + PS
Sbjct: 289 SVMSGKCIDGASIEVTLAKP-VNKESTGRQHLNGQISPS 326
>gi|432093052|gb|ELK25342.1| Putative RNA-binding protein 46 [Myotis davidii]
Length = 533
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 147/265 (55%), Gaps = 16/265 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 119
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSA 177
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +V
Sbjct: 178 TDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRV 235
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K LYV+NL +T +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 236 KVLYVRNLMISTAEDTIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMS 289
Query: 339 DTEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>gi|351705983|gb|EHB08902.1| Heterogeneous nuclear ribonucleoprotein R [Heterocephalus glaber]
Length = 670
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 148/260 (56%), Gaps = 10/260 (3%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VF+G +P+D E++L L E G ++++ L+ D SG+++G+A + F KE A+ A+
Sbjct: 226 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYALITFCGKEAAQEAVKLC 285
Query: 166 CSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPS 224
S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L P
Sbjct: 286 DSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKK 345
Query: 225 RNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALY 284
+NR F F+ Y ++ A +R+++ S K+ GN TV WA+P PD A +VK L+
Sbjct: 346 KNR-FCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA--KVKVLF 402
Query: 285 VKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYE 344
V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+ + E
Sbjct: 403 VRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGKE 456
Query: 345 IDGQVLEVALARPQTNKRTE 364
I+G+ +E+ LA+P KR E
Sbjct: 457 IEGEEIEIVLAKPPDKKRKE 476
>gi|47230069|emb|CAG10483.1| unnamed protein product [Tetraodon nigroviridis]
Length = 621
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 157/349 (44%), Gaps = 88/349 (25%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G+E+F+G +P+D E++L L E G ++++ L+ D SG ++G+AFV F +KE
Sbjct: 156 AQPTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEA 215
Query: 158 A--------------KRAIDELC----------------------SKDFK---------- 171
A K LC SK
Sbjct: 216 AQQAVKLVRLRSLHNKNKCTPLCFFLHSAQPTQQCTVTVDIFLIVSKVLSPPLPQFSLQC 275
Query: 172 -------GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPS 224
GK I +S NNRLF+G++PKS T+++ + V G++ + L P
Sbjct: 276 NNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIIEEFSKVTEGLNDVILYLQPVDKK 335
Query: 225 RNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD------------- 271
+NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD
Sbjct: 336 KNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPLEDPDPEVMAKVRVGPRA 395
Query: 272 ----------------HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPG 315
S + QVK L+V+NL + T + L++ F + G++ +V
Sbjct: 396 PIVCVLARIFFFFLPTLSLSGPLQVKVLFVRNLASSVTEELLEKAFSQFGKLERV----- 450
Query: 316 KSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+D+ FIH+ ER A+KA+ D +++G+ +E+ A+P KR E
Sbjct: 451 -KKLKDYAFIHFEERDGAVKALADLNGKDLEGEHIEIVFAKPPDQKRKE 498
>gi|349603648|gb|AEP99431.1| Heteroproteinous nuclear ribonucleoprotein Q-like protein, partial
[Equus caballus]
Length = 367
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 125/212 (58%), Gaps = 3/212 (1%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKV 310
+VK L+V+NL T + L++ F + G++ +V
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV 367
>gi|343172766|gb|AEL99086.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 172/339 (50%), Gaps = 33/339 (9%)
Query: 14 DEDDYMEEIDDDPEEQLDDDGEVGRDGNVKQNDEDEEYDAETSKEDQSPGANGSHINTED 73
DE ++E D E +DD G DEE E +ED + +
Sbjct: 84 DEAAQLKENDAPVSEGMDDYG-------------DEEGFVEPGEEDLRDDDDPETTDDMK 130
Query: 74 AVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEV 133
+ +E+ A+ +++ K K + E+FIGGL + EEDL+ E +GEV EV
Sbjct: 131 VLNEENNDLAAAAKERKIKKEH---------EIFIGGLDCEVVEEDLKMAFEKVGEVVEV 181
Query: 134 GLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPK 193
L+KD + +++G FV F +K+ AK+A+ E+ + GK + SE N+ LFIGN+
Sbjct: 182 RLLKDSCTNKNRGCGFVRFATKDQAKKALSEMKNPVISGKRCGTAASEDNDTLFIGNICN 241
Query: 194 SWTEKEFRKVIEDVG-PGVDTIELIKDPQAPSRNRGFAFVLY--YNNACADYSRQKMTSA 250
+WT++ K +++ GV+ I L++DP+ +RGF F+ + +++A + R +
Sbjct: 242 TWTKEAINKKLKEYNLEGVENITLVQDPRHEGLSRGFCFIQFACHDDAMFAFKRLQKPDV 301
Query: 251 NFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV 310
F T V+++EP PD A +VK++++ LP ++++ FQ +GE+ +V
Sbjct: 302 IFGHAERTVKVAFSEPLQEPDPEIMA--KVKSVFIDGLPPYWDEDRVRKHFQGYGEIKRV 359
Query: 311 V----TPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEI 345
P K ++DFGF+ + +A+ I+D K ++
Sbjct: 360 TLARNMPAAK--RKDFGFVDFMTHEAAIACIEDVNKKDL 396
>gi|449432380|ref|XP_004133977.1| PREDICTED: uncharacterized protein LOC101208921 [Cucumis sativus]
Length = 788
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 197/378 (52%), Gaps = 42/378 (11%)
Query: 8 EERVDLDEDDYMEEIDDDPEEQLDDDGEVGRD-GNVKQNDEDEEYDAETSKEDQSPGANG 66
+ER+DL+ D+DPE + D+DG D ++Q D E D E ED G
Sbjct: 126 DERLDLE--------DNDPESEPDEDGGFEYDEKEIEQEDVQEVVDGEGEPEDNVGDEEG 177
Query: 67 SHI--NTEDAVED-----------EDKRTASISEDEKEKHDQLLA--LPPHGSEVFIGGL 111
+ + EDA ED ED A + + ++++H +++ EVF+GGL
Sbjct: 178 DMVEEDVEDAQEDLEGEDDDQQGGEDHEHAGMVDADEDEHHEVVKERRKRKEFEVFVGGL 237
Query: 112 PKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFK 171
KD EEDL+ + +GEV EV L+ + + ++KGFAF+ F + E AKRA+ EL +
Sbjct: 238 DKDVKEEDLKKVFSAVGEVTEVRLMMNPQTKKNKGFAFLRFATVEEAKRAVSELKNPVIN 297
Query: 172 GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE---LIKDPQAPSRNRG 228
GK + S+ ++ LF+GN+ K+W + ++ ++ GVD +E L++D NRG
Sbjct: 298 GKQCGVTPSQDSDTLFLGNICKTWKKDALKEKLKHY--GVDNVEDLTLVEDSNNEGSNRG 355
Query: 229 FAFVLYYNNACADYSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKN 287
FAF+ + + + A + +++ + + P VS+A+ S D +QVK ++V +
Sbjct: 356 FAFLEFSSRSDAMDAFKRLQKRDVVFGVDRPAKVSFAD--SFIDPGDEIMAQVKTVFVDS 413
Query: 288 LPENTTTKQLKELFQRHGEVTKVV----TPPGKSGKRDFGFIHYAERSSAL---KAIKDT 340
LP + + ++ L +++GE+ K+ P K ++DFGF+ + +A+ K+I ++
Sbjct: 414 LPASWDEEFVRGLLKKYGEIEKIELARNMPSAK--RKDFGFVTFDTHDAAVSCAKSINNS 471
Query: 341 EKYEIDGQV-LEVALARP 357
E E D + + L+RP
Sbjct: 472 ELGEGDNKAKVRARLSRP 489
>gi|449519174|ref|XP_004166610.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101228505 [Cucumis sativus]
Length = 788
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 108/361 (29%), Positives = 194/361 (53%), Gaps = 38/361 (10%)
Query: 12 DLDEDDYMEEIDD--DPEEQL-DDDGEVGRDGNVKQNDEDEEYDAETSKEDQSPGANGSH 68
+++++D E +D +PE+ + D++G++ V+++ ED + D E +DQ G + H
Sbjct: 152 EIEQEDVQEVVDXGGEPEDNVGDEEGDM-----VEEDVEDAQEDLEGEDDDQQGGEDHEH 206
Query: 69 INTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIG 128
DA DED+ + E K K EVF+GGL KD EEDL+ + +G
Sbjct: 207 AGMVDA--DEDEHHEVVKERRKRKE----------FEVFVGGLDKDVKEEDLKKVFSAVG 254
Query: 129 EVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFI 188
EV EV L+ + + ++KGFAF+ F + E AKRA+ EL + GK + S+ ++ LF+
Sbjct: 255 EVTEVRLMMNPQTKKNKGFAFLRFATVEEAKRAVSELKNPVINGKQCGVTPSQDSDTLFL 314
Query: 189 GNVPKSWTEKEFRKVIEDVGPGVDTIE---LIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
GN+ K+W + ++ ++ GVD +E L++D NRGFAF+ + + + A + +
Sbjct: 315 GNICKTWKKDALKEKLKHY--GVDNVEDLTLVEDSNNEGSNRGFAFLEFSSRSDAMDAFK 372
Query: 246 KMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRH 304
++ + + P VS+A+ S D +QVK ++V +LP + + ++ L +++
Sbjct: 373 RLQKRDVVFGVDRPAKVSFAD--SFIDPGDEIMAQVKTVFVDSLPASWDEEFVRGLLKKY 430
Query: 305 GEVTKVV----TPPGKSGKRDFGFIHYAERSSAL---KAIKDTEKYEIDGQV-LEVALAR 356
GE+ K+ P K ++DFGF+ + +A+ K+I ++E E D + + L+R
Sbjct: 431 GEIEKIELARNMPSAK--RKDFGFVTFDTHDAAVSCAKSINNSELGEGDNKAKVRARLSR 488
Query: 357 P 357
P
Sbjct: 489 P 489
>gi|358342035|dbj|GAA49590.1| APOBEC1 complementation factor [Clonorchis sinensis]
Length = 1032
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 136/267 (50%), Gaps = 21/267 (7%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVFIG +P+D EE+L + E IG ++ L+ + + G ++G+ F + ++E K
Sbjct: 98 PPRGCEVFIGKIPRDCFEEELIPVFEQIGPIYMFRLMMEFN-GTNRGYGFCVYTNREDTK 156
Query: 160 RAIDELCSKDF-KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
+A+ L + + KGKTI S N RLF+G +PK+ T +E ++ V GV +
Sbjct: 157 KAVQALDNYEIRKGKTIGVCFSVDNCRLFVGGIPKNKTREEIMAEMKRVTEGVKDVISYP 216
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
S+NRGFAFV Y ++ A +R+K+ +L V WAEP+ + S
Sbjct: 217 SVTDKSKNRGFAFVEYESHKAAAMARRKLMPGKIQLWNQQIAVDWAEPEREVNED--IMS 274
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHG--------EVTKVVTPPGKSGKRDFGFIHYAER 330
+VK LYV+NL +TT L+E F V K+ D+ FIH+ ER
Sbjct: 275 KVKILYVRNLMLSTTEDGLREHFVCAAGGDPNCIERVKKI---------SDYAFIHFKER 325
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARP 357
A + ++ IDG +EV A+P
Sbjct: 326 EQAARCLEALNDTLIDGSKIEVTWAKP 352
>gi|343172764|gb|AEL99085.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 160/305 (52%), Gaps = 20/305 (6%)
Query: 48 DEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVF 107
DEE E +ED + + + +E+ A+ +++ K K + E+F
Sbjct: 105 DEEGFVEPGEEDLRDDDDPETTDDMKVLNEENNDLAAAAKERKIKKEH---------EIF 155
Query: 108 IGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCS 167
IGGL + EEDL+ E +GEV EV L+KD + +++G FV F +K+ AK+A+ E+ +
Sbjct: 156 IGGLDCEVVEEDLKMAFEKVGEVVEVRLLKDSCTNKNRGCGFVRFATKDQAKKALSEMKN 215
Query: 168 KDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAPSRN 226
GK + SE N+ LFIGN+ +WT++ K +++ GV+ I L++DP+ +
Sbjct: 216 PVISGKRCGTAASEDNDTLFIGNICNTWTKEAITKKLKEYNLEGVENITLVQDPRHEGLS 275
Query: 227 RGFAFVLY--YNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALY 284
RGF F+ + +++A + R + F T V+++EP PD A +VK+++
Sbjct: 276 RGFCFIQFACHDDAMFAFKRLQKPDVIFGHAERTVKVAFSEPLQEPDPEIMA--KVKSVF 333
Query: 285 VKNLPENTTTKQLKELFQRHGEVTKVV----TPPGKSGKRDFGFIHYAERSSALKAIKDT 340
+ LP ++++ FQ +GE+ +V P K ++DFGF+ + +A+ I D
Sbjct: 334 IDGLPPYWDEDRVRKHFQGYGEIERVTLARNMPAAK--RKDFGFVDFLTHEAAIACIDDI 391
Query: 341 EKYEI 345
K ++
Sbjct: 392 NKKDL 396
>gi|71987750|ref|NP_493049.2| Protein HRP-2, isoform a [Caenorhabditis elegans]
gi|42733185|emb|CAB70238.2| Protein HRP-2, isoform a [Caenorhabditis elegans]
Length = 611
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 139/256 (54%), Gaps = 10/256 (3%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G E+++G +P D E+ L L E G+++++ L+ D SG S+G+AFV + +KE A A
Sbjct: 198 QGHEIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAA 257
Query: 162 IDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDP 220
+ GK ++ ++S N RLFIGN+PK+ ++ E + ++ GV + + P
Sbjct: 258 AKTYDGHEISTGKPLKVNVSIANTRLFIGNIPKTKSKDEILEELKTHAEGVVDVIVYSVP 317
Query: 221 -QAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
+NRGF FV + ++ A ++K+ + V WAE + PD S+
Sbjct: 318 DNEKIKNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEHQEEPDED--TMSK 375
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
VK LY++N+ E T ++L ELF+ + + +V +D+ FIH+ ER LKA+++
Sbjct: 376 VKVLYIRNIKEAVTEEKLNELFKEYASLDRV------KKVKDYAFIHFNERDDCLKAMEE 429
Query: 340 TEKYEIDGQVLEVALA 355
E++G V+E +LA
Sbjct: 430 WNGKELEGTVVEASLA 445
>gi|358336055|dbj|GAA54619.1| APOBEC1 complementation factor [Clonorchis sinensis]
Length = 292
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 135/250 (54%), Gaps = 11/250 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVFIG +P+D E++L + E +G ++ L+ D SG ++G+ F + ++E +
Sbjct: 38 PPRGCEVFIGKIPRDCFEDELVPIFETVGRIYMFRLMMDF-SGCNRGYGFCIYTNREDTR 96
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
RA+ EL S + + GK + +S N RLF+G +PK+ T+ E + V GV + +
Sbjct: 97 RAVAELDSYEIRRGKMLGVCLSVDNCRLFVGGIPKNKTKDEIMAEMLKVTDGVKDVIVYP 156
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
++NRGFAFV Y N+ A +R+K+ L G+ V WAEP+ D S
Sbjct: 157 SVADKTKNRGFAFVEYENHKAAAMARRKLIPGRIHLWGHQIAVDWAEPEREVDED--IMS 214
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+V+ LYV+NL +TT + L++ R V K RD+ F+H+ +R A A++
Sbjct: 215 KVRILYVRNLMLHTTEEALRDHCNRAIGAVDAVERVKKI--RDYAFVHFRDRLQATAALR 272
Query: 339 DTEKYEIDGQ 348
++DG+
Sbjct: 273 -----QLDGK 277
>gi|348518317|ref|XP_003446678.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Oreochromis niloticus]
Length = 594
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 136/266 (51%), Gaps = 44/266 (16%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G+E+F+G +P+D E++L L E G ++++ L+ D S ++G+AF+ F SKE A+
Sbjct: 158 PPVGTEIFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSSLNRGYAFITFCSKEGAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y DH AA
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-- 300
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
QVK L+V+NL T + L++ F G++ +V +D+ FIH+ ER A+KA++
Sbjct: 301 QVKVLFVRNLANGVTEELLEKSFSEFGKLERV------KKLKDYAFIHFEERDGAVKALE 354
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ E++G+ +E+ A+P KR E
Sbjct: 355 EMNGKELEGEPIEIVFAKPPDQKRKE 380
>gi|449266622|gb|EMC77664.1| putative RNA-binding protein 46, partial [Columba livia]
Length = 467
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 145/263 (55%), Gaps = 12/263 (4%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIK 119
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK + E ++ V GV + + +
Sbjct: 120 FLNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKDEILNEMKKVTEGVVDVIVYPNATD 179
Query: 223 PSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKA 282
++NRGFAFV Y ++ A +R+++ F+L G+T V WA+P+ D +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRRLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRVKV 237
Query: 283 LYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 238 LYVRNLMMSTTEETIKAEFNKFKPGVVERV------KKLRDYAFVHFFHREDAVAAMSVM 291
Query: 341 EKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 292 NGKCIDGASIEVTLAKPVNKEST 314
>gi|345326438|ref|XP_003431044.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q
[Ornithorhynchus anatinus]
Length = 588
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 137/266 (51%), Gaps = 44/266 (16%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y DH AA
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-- 300
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
QVK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 301 QVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 354
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 355 EMNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|395857936|ref|XP_003801336.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Otolemur garnettii]
Length = 588
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 137/266 (51%), Gaps = 44/266 (16%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y DH AA
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-- 300
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
QVK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 301 QVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 354
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 355 EMNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|345326440|ref|XP_001510154.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Ornithorhynchus anatinus]
Length = 527
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 137/266 (51%), Gaps = 44/266 (16%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y DH AA
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-- 300
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
QVK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 301 QVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 354
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 355 EMNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|228008295|ref|NP_001153147.1| heterogeneous nuclear ribonucleoprotein Q isoform 4 [Homo sapiens]
gi|297678606|ref|XP_002817155.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Pongo abelii]
gi|301775587|ref|XP_002923214.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 4
[Ailuropoda melanoleuca]
gi|332218421|ref|XP_003258354.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|332824482|ref|XP_518621.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Pan
troglodytes]
gi|348578332|ref|XP_003474937.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 4
[Cavia porcellus]
gi|426234738|ref|XP_004011349.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 6
[Ovis aries]
gi|296484069|tpg|DAA26184.1| TPA: synaptotagmin binding, cytoplasmic RNA interacting protein
isoform 1 [Bos taurus]
Length = 588
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 137/266 (51%), Gaps = 44/266 (16%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y DH AA
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-- 300
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
QVK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 301 QVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 354
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 355 EMNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|344264675|ref|XP_003404417.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Loxodonta africana]
Length = 585
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 137/266 (51%), Gaps = 44/266 (16%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 155 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 214
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 215 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 274
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y DH AA
Sbjct: 275 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-- 297
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
QVK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 298 QVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 351
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 352 EMNGKDLEGENIEIVFAKPPDQKRKE 377
>gi|338710583|ref|XP_003362387.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Equus
caballus]
Length = 588
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 137/266 (51%), Gaps = 44/266 (16%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y DH AA
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-- 300
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
QVK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 301 QVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 354
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 355 EMNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|334324402|ref|XP_003340516.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Monodelphis
domestica]
Length = 588
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 137/266 (51%), Gaps = 44/266 (16%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y DH AA
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-- 300
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
QVK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 301 QVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 354
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 355 EMNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|338710585|ref|XP_003362388.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Equus
caballus]
Length = 527
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 137/266 (51%), Gaps = 44/266 (16%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y DH AA
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-- 300
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
QVK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 301 QVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 354
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 355 EMNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|228008398|ref|NP_001153146.1| heterogeneous nuclear ribonucleoprotein Q isoform 3 [Homo sapiens]
gi|291396566|ref|XP_002714607.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 3 [Oryctolagus cuniculus]
gi|296198706|ref|XP_002746829.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Callithrix jacchus]
gi|301775583|ref|XP_002923212.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Ailuropoda melanoleuca]
gi|332218417|ref|XP_003258352.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|348578334|ref|XP_003474938.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 5
[Cavia porcellus]
gi|397504634|ref|XP_003822889.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Pan
paniscus]
gi|402867570|ref|XP_003897916.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Papio anubis]
gi|426234736|ref|XP_004011348.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 5
[Ovis aries]
gi|21619168|gb|AAH32643.1| SYNCRIP protein [Homo sapiens]
gi|119569013|gb|EAW48628.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_f [Homo sapiens]
gi|296484070|tpg|DAA26185.1| TPA: synaptotagmin binding, cytoplasmic RNA interacting protein
isoform 2 [Bos taurus]
gi|325464513|gb|ADZ16027.1| synaptotagmin binding, cytoplasmic RNA interacting protein
[synthetic construct]
Length = 527
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 137/266 (51%), Gaps = 44/266 (16%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y DH AA
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-- 300
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
QVK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 301 QVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 354
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 355 EMNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|426353903|ref|XP_004044414.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 527
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 137/266 (51%), Gaps = 44/266 (16%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y DH AA
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-- 300
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
QVK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 301 QVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 354
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 355 EMNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|395857932|ref|XP_003801334.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Otolemur garnettii]
Length = 527
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 137/266 (51%), Gaps = 44/266 (16%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y DH AA
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-- 300
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
QVK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 301 QVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 354
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 355 EMNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|344264677|ref|XP_003404418.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Loxodonta africana]
Length = 524
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 137/266 (51%), Gaps = 44/266 (16%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 155 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 214
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 215 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 274
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y DH AA
Sbjct: 275 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-- 297
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
QVK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 298 QVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 351
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 352 EMNGKDLEGENIEIVFAKPPDQKRKE 377
>gi|326916229|ref|XP_003204412.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Meleagris gallopavo]
Length = 527
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 137/266 (51%), Gaps = 44/266 (16%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y DH AA
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-- 300
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
QVK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 301 QVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 354
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 355 EMNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|149062707|gb|EDM13130.1| apobec-1 complementation factor, isoform CRA_d [Rattus norvegicus]
Length = 578
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 148/263 (56%), Gaps = 24/263 (9%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G E+FIG LP RDL E IG+++E+ ++ D + G ++G+AFV F +K+ AK
Sbjct: 52 PERGCEIFIGKLP--------RDLFEDIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 102
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I
Sbjct: 103 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDVIV 160
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+++ +L G+ V WAEP+ D
Sbjct: 161 YPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDED--T 218
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R A+
Sbjct: 219 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAV 272
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
+A+K +DG +EV LA+P
Sbjct: 273 EAMKALNGKVLDGSPIEVTLAKP 295
>gi|149062704|gb|EDM13127.1| apobec-1 complementation factor, isoform CRA_a [Rattus norvegicus]
Length = 375
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 148/263 (56%), Gaps = 24/263 (9%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G E+FIG LP RDL E IG+++E+ ++ D + G ++G+AFV F +K+ AK
Sbjct: 52 PERGCEIFIGKLP--------RDLFEDIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 102
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I
Sbjct: 103 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDVIV 160
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+++ +L G+ V WAEP+ D
Sbjct: 161 YPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDED--T 218
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R A+
Sbjct: 219 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAV 272
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
+A+K +DG +EV LA+P
Sbjct: 273 EAMKALNGKVLDGSPIEVTLAKP 295
>gi|149062706|gb|EDM13129.1| apobec-1 complementation factor, isoform CRA_c [Rattus norvegicus]
Length = 586
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 148/263 (56%), Gaps = 24/263 (9%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G E+FIG LP RDL E IG+++E+ ++ D + G ++G+AFV F +K+ AK
Sbjct: 52 PERGCEIFIGKLP--------RDLFEDIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 102
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I
Sbjct: 103 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDVIV 160
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+++ +L G+ V WAEP+ D
Sbjct: 161 YPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDED--T 218
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R A+
Sbjct: 219 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAV 272
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
+A+K +DG +EV LA+P
Sbjct: 273 EAMKALNGKVLDGSPIEVTLAKP 295
>gi|308505824|ref|XP_003115095.1| CRE-HRP-2 protein [Caenorhabditis remanei]
gi|308259277|gb|EFP03230.1| CRE-HRP-2 protein [Caenorhabditis remanei]
Length = 645
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 136/255 (53%), Gaps = 10/255 (3%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G E+++G +P D E+ L L G++++ L+ D +G S+G+AFV + KE A A
Sbjct: 224 GHEIYVGHIPTDLFEDTLVPLFAESGKIWDFRLMMDPMTGASRGYAFVTYCEKEHATNAA 283
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDP- 220
+ + GK ++ ++S N RLF+GN+PK+ ++ E + ++ GV + + P
Sbjct: 284 KKFDGHEISTGKPLKVNVSIANTRLFLGNIPKTKSKDEILEELKSHAEGVTDVIVYSVPD 343
Query: 221 QAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
RNRGF FV + ++ A ++K+ + V WAE + PD S+V
Sbjct: 344 NEKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEQQEEPDED--TMSKV 401
Query: 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
K LY++N+ E T ++L ELF+ + + +V +D+ FIH+ ER +KA++
Sbjct: 402 KVLYIRNIKEAVTEEKLTELFKEYASLDRV------KKVKDYAFIHFNERDDCMKAMEQW 455
Query: 341 EKYEIDGQVLEVALA 355
E++G V+E +LA
Sbjct: 456 NGKELEGTVVEASLA 470
>gi|341894933|gb|EGT50868.1| hypothetical protein CAEBREN_24646 [Caenorhabditis brenneri]
Length = 630
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 137/256 (53%), Gaps = 10/256 (3%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G E+++G +P D E+ L L E G+++++ L+ D +G S+G+AFV + KE A A
Sbjct: 216 QGHEIYVGHIPNDIFEDTLVPLFEKSGKIWDLRLMMDPMTGASRGYAFVTYCEKEHAANA 275
Query: 162 IDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDP 220
+ GK ++ ++S N RLF+GN+PK+ ++ E + ++ GV + + P
Sbjct: 276 AKTYDGHEISTGKPLKVNVSIANTRLFLGNIPKTKSKDEILEELKTHAEGVTDVIVYSVP 335
Query: 221 QAPS-RNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
RNRGF FV + ++ A ++K+ + V WAE + PD S+
Sbjct: 336 DNDKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEHQEEPDED--TMSK 393
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
VK LY++N+ E T ++L E+F+ + + +V +D+ FIH+ ER +KA++
Sbjct: 394 VKVLYIRNIKEAVTEEKLTEIFKEYASLDRV------KKVKDYAFIHFNEREDCMKAMEQ 447
Query: 340 TEKYEIDGQVLEVALA 355
E++G V+E +LA
Sbjct: 448 WNGKELEGTVVEASLA 463
>gi|268569598|ref|XP_002640564.1| C. briggsae CBR-HRP-2 protein [Caenorhabditis briggsae]
Length = 626
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 144/261 (55%), Gaps = 11/261 (4%)
Query: 98 ALPPHGS-EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
A P GS E+++G +P D E+ L L G+V+++ L+ D +G S+G+AFV + +KE
Sbjct: 202 ATGPTGSCEIYVGHIPNDIFEDKLLPLFAESGKVYDLRLMMDPMTGASRGYAFVTYCNKE 261
Query: 157 VAKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
A A + + GKT++ ++S N RLF+GN+PK+ ++ E + ++ GV +
Sbjct: 262 DAAAAAKKFDGHELSPGKTLKVNISIANTRLFLGNIPKTKSKDEILEELKTHAEGVTDVI 321
Query: 216 LIKDP-QAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
+ P RNRGF FV + ++ A ++K+ + V WAE + PD A
Sbjct: 322 VYSVPDNEKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEHQDEPD--A 379
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
S+VK LY++N+ E T ++L ELF+ + + +V +D+ FIH+ ER +
Sbjct: 380 DTMSKVKVLYIRNIKEAVTEEKLTELFKEYASLDRV------KKVKDYAFIHFNERDDCV 433
Query: 335 KAIKDTEKYEIDGQVLEVALA 355
KA+++ +++G ++E +LA
Sbjct: 434 KAMEEWNGKDLEGTIVEASLA 454
>gi|212274617|ref|NP_001130787.1| uncharacterized protein LOC100191891 [Zea mays]
gi|194690114|gb|ACF79141.1| unknown [Zea mays]
gi|414868618|tpg|DAA47175.1| TPA: hypothetical protein ZEAMMB73_366443 [Zea mays]
Length = 605
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 147/270 (54%), Gaps = 17/270 (6%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G+EVF+GGLP+ A+E LR++ GE+ + ++KD+ SG SKG+ FV F ++ A A
Sbjct: 18 GTEVFVGGLPRSATESTLREIFSSCGEIIDARIMKDQ-SGHSKGYGFVRFAKRDYANTAK 76
Query: 163 DELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL-----I 217
+ + +GK + +S + +F GN+ K WT +EF ++I V +++L +
Sbjct: 77 RQKNGIEVQGKRLVVELSMDQDTVFFGNLCKEWTLEEFEELIHKAFKDVVSVDLAMASNL 136
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKL-DGNTPTVSWAEPKSTPDHSAAA 276
+ NRGF FV + ++A A + + +F L D P ++WA+ +S D A
Sbjct: 137 GSSNKKNINRGFGFVRFSSHAAAARVIRIGSRTDFMLGDILHPAINWADKESHLDPDEMA 196
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
++K+ ++ NLPE+ + L++LF + GEV +V + G+ F+H+A+RS A
Sbjct: 197 --KMKSAFIGNLPEDVNEEYLRKLFGQFGEVVRVAI--SRKGQCPVAFVHFAKRSELENA 252
Query: 337 IKDTEKYEIDGQ------VLEVALARPQTN 360
I++ + + G ++V++ARP +
Sbjct: 253 IEEMDGKTVRGPGRGPSFKIQVSVARPTAD 282
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 29/169 (17%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
+E +F+G +P+S TE R++ G +D ++KD S +G+ FV + A
Sbjct: 15 TEKGTEVFVGGLPRSATESTLREIFSSCGEIIDA-RIMKDQSGHS--KGYGFVRF---AK 68
Query: 240 ADYSRQKMTSAN-FKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
DY+ N ++ G V + + T ++ NL + T ++ +
Sbjct: 69 RDYANTAKRQKNGIEVQGKRLVVELSMDQDT-------------VFFGNLCKEWTLEEFE 115
Query: 299 ELFQR-HGEVTKV----VTPPGKSGK----RDFGFIHYAERSSALKAIK 338
EL + +V V + G S K R FGF+ ++ ++A + I+
Sbjct: 116 ELIHKAFKDVVSVDLAMASNLGSSNKKNINRGFGFVRFSSHAAAARVIR 164
>gi|414868617|tpg|DAA47174.1| TPA: hypothetical protein ZEAMMB73_366443 [Zea mays]
Length = 609
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 147/270 (54%), Gaps = 17/270 (6%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G+EVF+GGLP+ A+E LR++ GE+ + ++KD+ SG SKG+ FV F ++ A A
Sbjct: 18 GTEVFVGGLPRSATESTLREIFSSCGEIIDARIMKDQ-SGHSKGYGFVRFAKRDYANTAK 76
Query: 163 DELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL-----I 217
+ + +GK + +S + +F GN+ K WT +EF ++I V +++L +
Sbjct: 77 RQKNGIEVQGKRLVVELSMDQDTVFFGNLCKEWTLEEFEELIHKAFKDVVSVDLAMASNL 136
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKL-DGNTPTVSWAEPKSTPDHSAAA 276
+ NRGF FV + ++A A + + +F L D P ++WA+ +S D A
Sbjct: 137 GSSNKKNINRGFGFVRFSSHAAAARVIRIGSRTDFMLGDILHPAINWADKESHLDPDEMA 196
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336
++K+ ++ NLPE+ + L++LF + GEV +V + G+ F+H+A+RS A
Sbjct: 197 --KMKSAFIGNLPEDVNEEYLRKLFGQFGEVVRVAI--SRKGQCPVAFVHFAKRSELENA 252
Query: 337 IKDTEKYEIDGQ------VLEVALARPQTN 360
I++ + + G ++V++ARP +
Sbjct: 253 IEEMDGKTVRGPGRGPSFKIQVSVARPTAD 282
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 29/169 (17%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
+E +F+G +P+S TE R++ G +D ++KD S +G+ FV + A
Sbjct: 15 TEKGTEVFVGGLPRSATESTLREIFSSCGEIIDA-RIMKDQSGHS--KGYGFVRF---AK 68
Query: 240 ADYSRQKMTSAN-FKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
DY+ N ++ G V + + T ++ NL + T ++ +
Sbjct: 69 RDYANTAKRQKNGIEVQGKRLVVELSMDQDT-------------VFFGNLCKEWTLEEFE 115
Query: 299 ELFQR-HGEVTKV----VTPPGKSGK----RDFGFIHYAERSSALKAIK 338
EL + +V V + G S K R FGF+ ++ ++A + I+
Sbjct: 116 ELIHKAFKDVVSVDLAMASNLGSSNKKNINRGFGFVRFSSHAAAARVIR 164
>gi|324508419|gb|ADY43553.1| RNA-binding protein 47 [Ascaris suum]
Length = 558
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 134/262 (51%), Gaps = 11/262 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G+EVF+G LP+ S+ L + +G ++E+ + + SG ++G+ F ++S E AK
Sbjct: 58 PPRGTEVFVGKLPRAISDMRLIQVLSAVGPLYELRQMLEP-SGVNRGYCFAVYQSLEGAK 116
Query: 160 RA-IDELCSKDFK---GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
RA I+ L + + G+ I S N RLFIG +P+ + I G + +
Sbjct: 117 RACIESLQLNNVEIEPGRRIGVVRSVDNRRLFIGGIPREIKADQIIAEIRKHTEGAEELV 176
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ SRNRGFAFV Y ++ A Y+R+K L G T + WAEP+ D +
Sbjct: 177 VYPSILDKSRNRGFAFVEYRDHKSAAYARKKFLQEPLILWGKTVCIDWAEPEQQVD--SD 234
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALK 335
VK LYV+NL NT L++ F+ G++ + RDF F+H+ R AL
Sbjct: 235 IMENVKILYVRNLMLNTDEITLRKYFEM-GDIHCI---ERVKKIRDFAFVHFTTREKALN 290
Query: 336 AIKDTEKYEIDGQVLEVALARP 357
A+ ++DG +EV LA+P
Sbjct: 291 ALNKLNHTKLDGSTIEVCLAKP 312
>gi|149062705|gb|EDM13128.1| apobec-1 complementation factor, isoform CRA_b [Rattus norvegicus]
Length = 397
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 148/263 (56%), Gaps = 24/263 (9%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G E+FIG LP RDL E IG+++E+ ++ D + G ++G+AFV F +K+ AK
Sbjct: 52 PERGCEIFIGKLP--------RDLFEDIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 102
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I
Sbjct: 103 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDVIV 160
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+++ +L G+ V WAEP+ D
Sbjct: 161 YPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDED--T 218
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R A+
Sbjct: 219 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAV 272
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
+A+K +DG +EV LA+P
Sbjct: 273 EAMKALNGKVLDGSPIEVTLAKP 295
>gi|359386142|gb|AEV43360.1| RNA recognition motif protein 1 [Citrus sinensis]
Length = 775
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 115/382 (30%), Positives = 199/382 (52%), Gaps = 35/382 (9%)
Query: 2 ADNTEVEERVDLDEDDYMEE------ID-DDPEEQLDDDGEVGR------DGNVKQNDED 48
D E +ER+DLD+++ E +D DD E + +D EVG D NV + +ED
Sbjct: 84 VDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEED 143
Query: 49 EEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGS-EVF 107
+ AE ED P +G + +E +R + +E + H+ EVF
Sbjct: 144 DL--AEGEMED-VPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVF 200
Query: 108 IGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCS 167
+GGL KD +DLR + +GEV EV L+ + + ++KGFAF+ F + E A++A+ EL +
Sbjct: 201 VGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN 260
Query: 168 KDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE---LIKDPQAPS 224
GK + S+ ++ LF+GN+ K+WT++ ++ ++ GVD +E L++D
Sbjct: 261 PVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHY--GVDNVEDLTLVEDSNNEG 318
Query: 225 RNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKAL 283
NRGFAF+ + + + A + +++ + + P VS+A+ S D +QVK +
Sbjct: 319 MNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFAD--SFIDPGDEIMAQVKTV 376
Query: 284 YVKNLPENTTTKQLKELFQRHGEVTKV----VTPPGKSGKRDFGFIHYAERSSAL---KA 336
+V LP + +++EL + +GE+TK+ P K ++DFGF+ + +A+ K+
Sbjct: 377 FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK--RKDFGFVTFDTHDAAVTCAKS 434
Query: 337 IKDTEKYEIDGQV-LEVALARP 357
I + E E D + + L+RP
Sbjct: 435 INNAELGEGDNKAKVRARLSRP 456
>gi|359489218|ref|XP_002270340.2| PREDICTED: uncharacterized protein LOC100232913 [Vitis vinifera]
gi|297734640|emb|CBI16691.3| unnamed protein product [Vitis vinifera]
Length = 812
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 141/248 (56%), Gaps = 12/248 (4%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+GGL KDA+E+DLR + +GEV EV L+ + + ++KGFAF+ F + E AKRA+ E
Sbjct: 233 EVFVGGLDKDATEDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAKRAVTE 292
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAP 223
L + GK + S+ ++ LF+GN+ K+WT++ ++ ++ G V+ + L++D
Sbjct: 293 LKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDLTLVEDSNNE 352
Query: 224 SRNRGFAFVLY--YNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
NRGFAF+ + ++A + R + F +D T VS+A+ S D +QVK
Sbjct: 353 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVD-RTAKVSFAD--SFIDPGDEIMAQVK 409
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVV----TPPGKSGKRDFGFIHYAERSSALKAI 337
+++ LP + +++EL +++GE+ K+ P K ++DFGF+ + +A+
Sbjct: 410 TVFIDGLPASWDEDRVRELLKKYGEIEKIELARNMPSAK--RKDFGFVTFDTHDAAVTCA 467
Query: 338 KDTEKYEI 345
K E+
Sbjct: 468 KSINNAEL 475
>gi|357518111|ref|XP_003629344.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355523366|gb|AET03820.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 989
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 171/351 (48%), Gaps = 40/351 (11%)
Query: 9 ERVDLDEDDYMEEIDDDPEEQLDDDGEVGRDGNVKQNDEDEEYDAETSKEDQSPGANGSH 68
E +DL E + + Q ++++ + ++ P
Sbjct: 356 ESIDLGEQERV------------------------QLEDEDPEEDPEEDPEEDPEELPED 391
Query: 69 INTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIG 128
T D DE +I++ + + + E+F+GGL +D +EEDL+ + + IG
Sbjct: 392 TETLDEEHDEHMEFEAIAKQRRIRKEH---------EIFVGGLDRDTTEEDLKKIFQRIG 442
Query: 129 EVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFI 188
EV EV L K+ + +++G+A V F +KE AK+A+ E+ + +GK S SE N+ LF+
Sbjct: 443 EVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSEMKNPVIRGKRCGTSPSEDNDTLFL 502
Query: 189 GNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAPSRNRGFAFVLY--YNNACADYSRQ 245
GN+ +WT++ ++ ++D G GV+ I L+ D Q +RGFAF+ + + +A Y R
Sbjct: 503 GNICNTWTKEAVKQKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRL 562
Query: 246 KMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHG 305
+ F T V++AEP PD A QVK++++ LP + ++E + +G
Sbjct: 563 QKPGVIFGHAERTAKVAFAEPIREPDPEIMA--QVKSVFINGLPLHWDEDHVREHLKSYG 620
Query: 306 EVTKVVTPP--GKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVAL 354
E+ K+V S ++D GF+ ++ +AL + K E+ ++ L
Sbjct: 621 EIVKIVLARKMSTSKRKDHGFVDFSTHEAALACVDGVNKSELGDGTSKIKL 671
>gi|15809588|gb|AAK59704.1| hnRNP Q2 [Homo sapiens]
Length = 588
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 136/266 (51%), Gaps = 44/266 (16%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NR F F+ Y DH AA
Sbjct: 278 QPDDKKKNRSFCFLEY-----------------------------------EDHKTAA-- 300
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
QVK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 301 QVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 354
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 355 EMNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|119569012|gb|EAW48627.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_e [Homo sapiens]
Length = 588
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 136/266 (51%), Gaps = 44/266 (16%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y DH AA
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-- 300
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
Q + L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 301 QARLLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 354
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 355 EMNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|350645567|emb|CCD59692.1| apobec-1 complementation factor, putative [Schistosoma mansoni]
Length = 702
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 129/240 (53%), Gaps = 6/240 (2%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVFIG +P+D E++L + E G+++ L+ D + G ++G+ F + ++ K
Sbjct: 61 PPKGCEVFIGKIPRDCFEDELIPIFELAGKIYMFRLMMDFN-GLNRGYGFCLYTNRNDTK 119
Query: 160 RAIDELCSKDF-KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
+A+D+L + KGK + S N RLFIG +PKS T+ E + V GV + +
Sbjct: 120 QAVDQLNGYEIRKGKLLGVCYSIDNCRLFIGGIPKSKTKDEIMLEMSKVTDGVKDVIVYP 179
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
++NRGFAFV Y N+ A +R+K+ L G+ V WAEP+ D + S
Sbjct: 180 SLVDKTKNRGFAFVEYENHKTAAMARRKLIPGRIHLWGHQIAVDWAEPERQVDEN--IMS 237
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+V+ LYV+NL +TT +K+ F + V K RD+ F+H+ R A+ A+K
Sbjct: 238 KVRILYVRNLMLHTTENAVKDHFNQAIHSMDAVERVKKI--RDYAFVHFHNRIDAITALK 295
>gi|307103016|gb|EFN51281.1| hypothetical protein CHLNCDRAFT_141215 [Chlorella variabilis]
Length = 365
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 132/276 (47%), Gaps = 54/276 (19%)
Query: 97 LALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDS-GESKGFAFVAFRSK 155
L+LPPHG+EVFIGGLP+ +E+ LRD G+V L+KD ++ +++G+ F+ F +K
Sbjct: 13 LSLPPHGTEVFIGGLPRTITEQQLRDFASEAGDVHSAKLIKDPNNPSQNRGYGFIKFYTK 72
Query: 156 EVAKRAIDELCSK---DFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVD 212
E A A+D L SK DF +R S+ ++LFIG +P + +E + +++ +
Sbjct: 73 EAAISAMDRLHSKELPDFPSTRVRIQPSQAKHKLFIGGIPHELSREELKDMLDPI----- 127
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS---- 268
+ A + PTV +AEP
Sbjct: 128 -----------------------------VKGEAGGLAGGGIGEKQPTVDYAEPSQRDGG 158
Query: 269 ----------TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG 318
VK ++V NLP T +L+++F ++GEV + P + G
Sbjct: 159 GGGGGGGGGGGGGGGGGGGGGVKNVFVGNLPPGATEDRLRDIFNKYGEVERTHIPRPRDG 218
Query: 319 --KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEV 352
+GF+H+ ER++A++A++D EK E+DG +L V
Sbjct: 219 DTHSKYGFVHFRERAAAMRAVEDVEKPELDGGLLNV 254
>gi|449500421|ref|XP_004174936.1| PREDICTED: probable RNA-binding protein 46 [Taeniopygia guttata]
Length = 757
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 143/257 (55%), Gaps = 12/257 (4%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + G+++E+ L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFGRAGKIYELRLMME-FSGENRGYAFVMYTTKEEAQLAIK 119
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKDKKKEEILNEMKKVTEGVVDVIVYPNATD 179
Query: 223 PSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKA 282
++NRGFAFV Y ++ A +R+++ F+ G+T V WA+P+ D +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRRLIPGTFQPWGHTIQVDWADPEKIVDEE--TMQRVKV 237
Query: 283 LYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
LYV+NL +TT ++K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 238 LYVRNLMISTTEDKIKAEFNKFKPGVVERV------KKLRDYAFVHFFHREDAVAAMSVM 291
Query: 341 EKYEIDGQVLEVALARP 357
IDG +EV LA+P
Sbjct: 292 NGKCIDGASIEVTLAKP 308
>gi|256077575|ref|XP_002575078.1| apobec-1 complementation factor [Schistosoma mansoni]
Length = 847
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 139/274 (50%), Gaps = 11/274 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G EVFIG +P+D E++L + E G+++ L+ D + G ++G+ F + ++ K
Sbjct: 61 PPKGCEVFIGKIPRDCFEDELIPIFELAGKIYMFRLMMDFN-GLNRGYGFCLYTNRNDTK 119
Query: 160 RAIDELCSKDF-KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
+A+D+L + KGK + S N RLFIG +PKS T+ E + V GV + +
Sbjct: 120 QAVDQLNGYEIRKGKLLGVCYSIDNCRLFIGGIPKSKTKDEIMLEMSKVTDGVKDVIVYP 179
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
++NRGFAFV Y N+ A +R+K+ L G+ V WAEP+ D S
Sbjct: 180 SLVDKTKNRGFAFVEYENHKTAAMARRKLIPGRIHLWGHQIAVDWAEPERQVD--ENIMS 237
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+V+ LYV+NL +TT +K+ F + V K RD+ F+H+ R A+ A+K
Sbjct: 238 KVRILYVRNLMLHTTENAVKDHFNQAIHSMDAVERVKKI--RDYAFVHFHNRIDAITALK 295
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAG 372
++D ++ L P T+ + G
Sbjct: 296 -----QLDDICVKNGLGSPNFTILTQSYMNQIYG 324
>gi|255571057|ref|XP_002526479.1| RNA binding protein, putative [Ricinus communis]
gi|223534154|gb|EEF35870.1| RNA binding protein, putative [Ricinus communis]
Length = 784
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 149/263 (56%), Gaps = 14/263 (5%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+GGL KDA+E+DLR + +GEV EV L+ + + ++KGFAF+ F + E AK+A+ E
Sbjct: 214 EVFVGGLDKDATEDDLRKVFTRVGEVTEVRLMMNPQTKKNKGFAFLRFSTVEQAKKAVTE 273
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAP 223
L + GK + S+ ++ LF+GN+ K+WT++ ++ ++ G V+ + L++D
Sbjct: 274 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDVTLVEDSNNE 333
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKA 282
NRGFAF+ + + + A + +++ + + P VS+A+ P A QVK
Sbjct: 334 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMA--QVKT 391
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKV----VTPPGKSGKRDFGFIHYAERSSAL---K 335
++V LP + +++EL ++ GE+ K+ P K ++DFGF+ + +A+ K
Sbjct: 392 VFVDGLPASWDEDRVRELLKKFGEIEKIELARNMPSAK--RKDFGFVTFDSHDAAVTCAK 449
Query: 336 AIKDTEKYEIDGQV-LEVALARP 357
+I + E E D + + L+RP
Sbjct: 450 SINNAELGEGDNKAKVRARLSRP 472
>gi|47225126|emb|CAF98753.1| unnamed protein product [Tetraodon nigroviridis]
Length = 583
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 146/300 (48%), Gaps = 50/300 (16%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L L E G+++E L+ + +GE++G+AFV + +KE A+RAI
Sbjct: 75 GCEVFVGKIPRDMYEDELVPLFERAGKLYEFRLMMEF-TGENRGYAFVMYTNKEAAQRAI 133
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
L + + GK I +S N RLF+G++PK T+ E ++ + GV + +
Sbjct: 134 QMLDNYKVRPGKFIGVCVSLDNCRLFLGSIPKEKTKDEVLAEMKKLTDGVVDVIMYPSST 193
Query: 222 APSRNRGFAFVLYYNNACADYSRQKM---------------------------------- 247
S+NRGFAFV Y ++ A +R+K+
Sbjct: 194 DKSKNRGFAFVEYKSHKAAAMARRKLIPGTSLSSDSVRGSIVFCPSALGFFFFTSMCVSS 253
Query: 248 ----TSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQR 303
T+ F+L G + V WA+P+ D +V+ LYV+NL NT+ + L + F
Sbjct: 254 GRGCTTGTFQLWGQSIQVDWAQPEK--DVEEEVMQRVRVLYVRNLMLNTSEETLFKAFSH 311
Query: 304 H--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNK 361
G V +V D+ F+HY R AL A+ IDG +EV LA+P +K
Sbjct: 312 FKPGSVERV------KKFTDYAFVHYYCREDALAALDPMNGVLIDGAAVEVMLAKPAISK 365
>gi|449497953|ref|XP_004174289.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q [Taeniopygia guttata]
Length = 492
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 137/269 (50%), Gaps = 23/269 (8%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
H + GLP+ +E+ + E++ GLV D E A F ++E A
Sbjct: 26 HFQTLLDAGLPQKVAEK--------LDEIYVAGLVAHSDLDERAIEALKEF-NEEGALAV 76
Query: 162 IDELCSKDFK------GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + D+ GK I +S NNRLF+G++PKS T+++ + V G+ +
Sbjct: 77 LQQFKDSDYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVI 136
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
L P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD
Sbjct: 137 LYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVM 196
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALK 335
A +VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+K
Sbjct: 197 A--KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVK 248
Query: 336 AIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+++ +++G+ +E+ A+P KR E
Sbjct: 249 AMEEMNGKDLEGENIEIVFAKPPDQKRKE 277
>gi|339253564|ref|XP_003372005.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316967645|gb|EFV52050.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 2180
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 144/269 (53%), Gaps = 23/269 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
E++IG +PK E+ L L E G+++++ ++ D SG +KG+AFV + K A A
Sbjct: 214 CEIYIGKIPKGIFEDTLIPLFEQCGKIYDIRVMMDPLSGTNKGYAFVTYCDKSSATEAAK 273
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSW----TEKEFRKVIEDVGPGVDTIE--- 215
+ + K GK +R ++S N RLF+GN+PKS +EF KV GV I
Sbjct: 274 KFEGYEIKNGKRLRVNVSVANTRLFVGNIPKSKGKEDIMEEFSKV-----SGVQNITDVI 328
Query: 216 LIKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHS 273
+ +P P +NRGF F+ + ++ A +++++ S+ F+ V WAE + D
Sbjct: 329 MYSNPNDPVNKKNRGFCFLEFADHKSASQAKRRLGSSRFRPWMMELVVEWAETQDDVDKE 388
Query: 274 AAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSA 333
S+VK LY++ L ++ + ++L+ F ++G V +V +D+ F+H+AER A
Sbjct: 389 --TMSKVKILYLRPLKDSVSEEELRVRFSQYGTVERV------KRIKDYAFVHFAEREQA 440
Query: 334 LKAIKDTEKYEIDGQVLEVALARPQTNKR 362
KAI+ + E DG EV+ A+P KR
Sbjct: 441 EKAIEAMKGQEFDGVPCEVSFAKPTDRKR 469
>gi|189234902|ref|XP_967881.2| PREDICTED: similar to APOBEC-1 complementation factor long
[Tribolium castaneum]
Length = 311
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 133/260 (51%), Gaps = 9/260 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G+E+FIG LP D E++L L G ++ + L+ D G ++G+ F+++ ++E A
Sbjct: 41 PPKGTEIFIGNLPPDLYEDELIPLFSQKGPIYNLRLMMD-FFGRTRGYGFISYFTQEDAH 99
Query: 160 RAIDELCSKDFKGK-TIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + K I SMS N RLFIGN+P+ T E + V+E G+ I
Sbjct: 100 AAVAAFNNYKIRNKGKIAVSMSVDNRRLFIGNIPRHVTLSEIQSVLEKYVEGIVDIIFYH 159
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+P S NRGF FV + ++ A +R++++ N + G V WAEP P +
Sbjct: 160 EPYNDSINRGFIFVEFESHRLAAIARRQLSPGNLTIWGKPIFVDWAEP--LPVVNPQILK 217
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAI 337
QV LY+ NLP ++++LK + + ++ K K +F F+H+ R A +A
Sbjct: 218 QVTKLYLSNLPMTLSSEELKSFLCELLDPSHII----KVHKINNFAFVHFTLRKYAEEAF 273
Query: 338 KDTEKYEIDGQVLEVALARP 357
+ + +++ V ARP
Sbjct: 274 RKLTGLVMMDKLIGVEWARP 293
>gi|297824497|ref|XP_002880131.1| hypothetical protein ARALYDRAFT_483601 [Arabidopsis lyrata subsp.
lyrata]
gi|297325970|gb|EFH56390.1| hypothetical protein ARALYDRAFT_483601 [Arabidopsis lyrata subsp.
lyrata]
Length = 805
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 98/341 (28%), Positives = 174/341 (51%), Gaps = 16/341 (4%)
Query: 80 KRTASISEDEKEKHDQLLALPPHGS-EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKD 138
K ++ +E+E HD L E+F+G L K A+EEDL+ + +GEV E+ ++K+
Sbjct: 185 KHGETVDVEEEEHHDVLHERRKRKEFEIFVGSLDKGATEEDLKKVFGHVGEVTEIRILKN 244
Query: 139 KDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEK 198
+ +SKG AF+ F + E AKRA+ EL S GK + S+ N+ LFIGN+ K+WT +
Sbjct: 245 PQTKKSKGSAFLRFATMEQAKRAVKELKSPMINGKKCGVTASQDNDTLFIGNICKTWTPE 304
Query: 199 EFRKVIEDVG-PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGN 257
R+ ++ G +D I L++D + NRG+AF+ + + + A + +++ +
Sbjct: 305 ALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVE 364
Query: 258 TPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPG- 315
P VS+ + P+ A QVK +++ L + +++++L +R+G++ KV
Sbjct: 365 KPAKVSFTDSFLDPEDEIMA--QVKTIFIDGLLPSWNEERVRDLLKRYGKLEKVELARNM 422
Query: 316 -KSGKRDFGFIHYAERSSALKAIKDTEKYEI----DGQVLEVALARP--QTNKRTEGVYS 368
+ ++DFGF+ + +A+ K E+ D + L+RP + K + S
Sbjct: 423 PSARRKDFGFVTFDTHEAAVTCAKFINNSELGEGEDKAKVRARLSRPLQKAGKGRQSSRS 482
Query: 369 CAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQP 409
H +G +G SFA S+++ A GAG + P
Sbjct: 483 DQRSRHGTG--RSGRISFARLPPRSLASSRS-ARGAGSRAP 520
>gi|301611921|ref|XP_002935471.1| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 579
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 117/379 (30%), Positives = 180/379 (47%), Gaps = 39/379 (10%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G E+FIG LP+D E++L LCE G+V+E+ ++ D + G ++G+AFV F +++ A+ AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKTGKVYEMRMMMDFN-GNNRGYAFVTFTNRQDARDAI 113
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+L + + + G+ + S N RLF+G +PK+ +E + V GV +++I P
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKRREEILVEMRKVTDGV--LDVIVYPS 171
Query: 222 AP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
A S+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D S
Sbjct: 172 AADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED--TMSS 229
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
VK LYV+NL T + +++ F PGK + + K I
Sbjct: 230 VKILYVRNLMLTTAEETIEKEFSN--------VKPGKKHLCLYCTSIILNLHTIKKMITI 281
Query: 340 TEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLG 399
IDG +EV LA+P +K + Y+ G + + Y G Y + LG
Sbjct: 282 LCLQIIDGSPIEVTLAKP-VDKESYVRYTRGTGGRGAAI-QGEYAYTIGHVYDPTTAYLG 339
Query: 400 VAAGAGLQQPMIYGRGQMPAGMHMVPMV-LPDGRIGYVLQQPGVQMPLPPPRPRRVE--R 456
P+ Y PA +P + P + GYV + V+ PP R R
Sbjct: 340 A--------PVFYAP---PAYTAAIPSIQFPPAK-GYVSNRSLVR----PPSVRGAAGVR 383
Query: 457 GPGGRG--ASSGGSDGSSG 473
G GGRG A +G G +G
Sbjct: 384 GLGGRGYLAYTGLGRGYAG 402
>gi|37359248|gb|AAN77868.1| putative heterogeneous nuclear ribonucleoprotein [Vitis vinifera]
Length = 342
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 139/248 (56%), Gaps = 12/248 (4%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+GGL KDA+E+DL+ + +GEV EV L+ + + ++KGFAF+ F + E AKRA+ E
Sbjct: 32 EVFVGGLDKDATEDDLKKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAKRAVTE 91
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAP 223
L + GK + S+ ++ LF+GN+ K+WT++ ++ ++ G V+ + L++D
Sbjct: 92 LKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDLTLVEDSNNE 151
Query: 224 SRNRGFAFV--LYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
NRGFAF+ + ++A + R + F +D T VS+ + P A QVK
Sbjct: 152 GMNRGFAFLEFSFRSDAMDAFKRLQEERCVFGVD-RTAKVSFTDSFIDPGDEIMA--QVK 208
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKV----VTPPGKSGKRDFGFIHYAERSSALKAI 337
+++ LP + +++EL +++GE+ K+ P K ++DFGF+ + +A+
Sbjct: 209 TVFIDGLPASWDEDRVRELLKKYGEIEKIELARNMPSAK--RKDFGFVTFDTHDAAVTCA 266
Query: 338 KDTEKYEI 345
K E+
Sbjct: 267 KSINNAEL 274
>gi|270002295|gb|EEZ98742.1| hypothetical protein TcasGA2_TC001297 [Tribolium castaneum]
Length = 672
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 133/260 (51%), Gaps = 9/260 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP G+E+FIG LP D E++L L G ++ + L+ D G ++G+ F+++ ++E A
Sbjct: 402 PPKGTEIFIGNLPPDLYEDELIPLFSQKGPIYNLRLMMD-FFGRTRGYGFISYFTQEDAH 460
Query: 160 RAIDELCSKDFKGK-TIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + K I SMS N RLFIGN+P+ T E + V+E G+ I
Sbjct: 461 AAVAAFNNYKIRNKGKIAVSMSVDNRRLFIGNIPRHVTLSEIQSVLEKYVEGIVDIIFYH 520
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+P S NRGF FV + ++ A +R++++ N + G V WAEP P +
Sbjct: 521 EPYNDSINRGFIFVEFESHRLAAIARRQLSPGNLTIWGKPIFVDWAEP--LPVVNPQILK 578
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAI 337
QV LY+ NLP ++++LK + + ++ K K +F F+H+ R A +A
Sbjct: 579 QVTKLYLSNLPMTLSSEELKSFLCELLDPSHII----KVHKINNFAFVHFTLRKYAEEAF 634
Query: 338 KDTEKYEIDGQVLEVALARP 357
+ + +++ V ARP
Sbjct: 635 RKLTGLVMMDKLIGVEWARP 654
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 146/272 (53%), Gaps = 31/272 (11%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
GSE+F+G +P+D E++L L + +++ L+ D +G ++GFAFV + + A++A+
Sbjct: 30 GSEIFVGNIPRDLFEDELIPLFSQVAPIYKFRLMMD-FTGNTRGFAFVTYYNVWDAQKAV 88
Query: 163 ---DELC-SKDFKGKTIRCSMSETNNRLFIGNVPKSWT----EKEFRKVIEDVGPGVDTI 214
++ C + + + + +S N RLF GNVPK T E E +K I+ + +
Sbjct: 89 LKFNKYCIASNTRKSQLTVHLSLDNCRLFFGNVPKDKTRDDIENELKKFIDGI------V 142
Query: 215 ELIKDPQ--APSRNRGFAFVLYYNNACADYSRQKMTS-ANFKLDGNTPTVSWAEPKSTPD 271
++I P+ A NRGFAFV + ++A A +R+K+ + + G V WAEP+ D
Sbjct: 143 KVITYPERNAHHFNRGFAFVEFQSHAIAAIARRKLLADGVIRPWGRKLYVDWAEPEPMVD 202
Query: 272 HSAAAASQVKALYVKNLPENTTTKQLKELFQRH-GEVTKVVTPPGKSGKRD-FGFIHYAE 329
+QVK LY+KN+P T +LK + GE+ + KRD + FIH+ E
Sbjct: 203 --PDVMTQVKVLYMKNVPTFWTLDRLKTYISKTVGEIFI-----ERIYKRDNYAFIHFDE 255
Query: 330 RSSALKAIKD----TEKYEIDGQVLEVALARP 357
RS A +A+K ++ +G+ +EV ARP
Sbjct: 256 RSFAERALKIFDSVSQYLSFNGKQIEVEWARP 287
>gi|363733071|ref|XP_420372.3| PREDICTED: probable RNA-binding protein 46 [Gallus gallus]
Length = 475
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 145/261 (55%), Gaps = 8/261 (3%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P++ E++L L E G+++E+ L+ + SGE++GFAFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRNIYEDELVPLFERAGKIYELRLMMEF-SGENRGFAFVMYTTKEDAQLAIK 119
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + G+ I +S N RLFIG +P+ ++E K ++ + GV + + D
Sbjct: 120 ILNNYEIRPGRFIGVCISLDNCRLFIGAIPREKKKEEILKEMKRITEGVVDVIVCPDATD 179
Query: 223 PSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKA 282
++NRGFAFV Y ++ A +R+++ F+L G V WA P+ D A +VK
Sbjct: 180 RTKNRGFAFVEYESHRAAAMARRRLLPGTFQLWGRAVQVDWACPEKEVD--AETMRRVKV 237
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEK 342
LYV+NL +TT +K F + +VV K RD+ F+H+ R A+ A+
Sbjct: 238 LYVRNLMISTTEDTIKAEFNKFK--PRVVERVKK--LRDYAFVHFYNREDAVAAMSIMNG 293
Query: 343 YEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 294 KCIDGASIEVTLAKPVNKEST 314
>gi|301611919|ref|XP_002935470.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 587
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 181/387 (46%), Gaps = 47/387 (12%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G E+FIG LP+D E++L LCE G+V+E+ ++ D + G ++G+AFV F +++ A+ AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKTGKVYEMRMMMDFN-GNNRGYAFVTFTNRQDARDAI 113
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+L + + + G+ + S N RLF+G +PK+ +E + V GV +++I P
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKRREEILVEMRKVTDGV--LDVIVYPS 171
Query: 222 AP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
A S+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D S
Sbjct: 172 AADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED--TMSS 229
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
VK LYV+NL T + +++ F PGK + + K I
Sbjct: 230 VKILYVRNLMLTTAEETIEKEFSN--------VKPGKKHLCLYCTSIILNLHTIKKMITI 281
Query: 340 TEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLG 399
IDG +EV LA+P +K + Y+ G + + Y G Y + LG
Sbjct: 282 LCLQIIDGSPIEVTLAKP-VDKESYVRYTRGTGGRGAAI-QGEYAYTIGHVYDPTTAYLG 339
Query: 400 VAAGAGLQQPMIYGRGQMPAGMHMVPMV-LPDGRIGYVLQQPGVQMPLPPPRPRRVE--- 455
P+ Y PA +P + P + GYV + V+ PP R +
Sbjct: 340 A--------PVFYAP---PAYTAAIPSIQFPPAK-GYVSNRSLVR----PPSVREIYMSV 383
Query: 456 -------RGPGGRG--ASSGGSDGSSG 473
RG GGRG A +G G +G
Sbjct: 384 PVGAAGVRGLGGRGYLAYTGLGRGYAG 410
>gi|326918248|ref|XP_003205402.1| PREDICTED: probable RNA-binding protein 46-like, partial [Meleagris
gallopavo]
Length = 467
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 145/261 (55%), Gaps = 8/261 (3%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P++ E++L L E G+++E+ L+ + SGE++GFAFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRNIYEDELVPLFERAGKIYELRLMME-FSGENRGFAFVMYTTKEDAQLAIK 119
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + G+ I +S N RLFIG +P+ ++E K ++ + GV + + D
Sbjct: 120 ILNNYEIRPGRFIGVCISLDNCRLFIGAIPREKKKEEILKEMKRITEGVVDVIVCPDATD 179
Query: 223 PSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKA 282
++NRGFAFV Y ++ A +R+++ F+L G V WA P+ D A +VK
Sbjct: 180 RTKNRGFAFVEYESHRAAAMARRRLLPGTFQLWGRAVQVDWACPEKEVD--AETMRRVKV 237
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEK 342
LYV+NL +TT +K F + +VV K RD+ F+H+ R A+ A+
Sbjct: 238 LYVRNLMISTTEDTIKAEFNKFK--PRVVERVKK--LRDYAFVHFYNREDAVAAMSVMNG 293
Query: 343 YEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 294 KCIDGASIEVTLAKPVNKEST 314
>gi|358344177|ref|XP_003636168.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355502103|gb|AES83306.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 824
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 147/271 (54%), Gaps = 12/271 (4%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+GGL KDA+E+DLR + +G V EV L+ + + ++KGFAF+ F + E AKRA+ E
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAP 223
L + GK + S+ ++ L++GN+ K+WT++ ++ ++ G V+ I L++D
Sbjct: 276 LKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDK 335
Query: 224 SRNRGFAFVLY--YNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
NRGFAF+ + ++A + R + F +D VS+A+ S D SQVK
Sbjct: 336 GTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVD-KPAKVSFAD--SFIDPGDEIMSQVK 392
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKR--DFGFIHYAERSSALK---A 336
+++ LP + ++ L +++GEV K+ R D+GF+ + +A++ +
Sbjct: 393 TVFIDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRCADS 452
Query: 337 IKDTEKYEIDGQV-LEVALARPQTNKRTEGV 366
I TE E D + + L+RP R + V
Sbjct: 453 ITGTELGEGDKKAKVRARLSRPLQRGRGKHV 483
>gi|321475098|gb|EFX86062.1| hypothetical protein DAPPUDRAFT_45498 [Daphnia pulex]
Length = 269
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 130/256 (50%), Gaps = 16/256 (6%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF+G +P+D E +L + + +G V+E+ L+ D + ++GFAFV F + A
Sbjct: 23 PSKGGEVFVGKIPRDLMENELLPVFQTVGPVYEIRLMMDTNE-TNRGFAFVTFATPADAG 81
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
+AI +L + + G+ I S N RLFIG +PK +E+E K + + GV + L
Sbjct: 82 KAIQKLNRYEIRPGRFIGVIRSMDNCRLFIGGIPKDKSEEEIHKEMSRITEGVVRVILYS 141
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+NRGFAF+ Y ++ A +R+K L G V WAEP+ S
Sbjct: 142 SVADKKKNRGFAFIEYESHRAAALARRKCLPDRLLLWGKNVAVDWAEPEPV--VEEEILS 199
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHG----EVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
+V+ LYV+NL T K+L+ELF G E K++ DF FIH+ RS A
Sbjct: 200 KVRVLYVRNLLITTKEKELEELFDTAGNGGVEKVKILN--------DFAFIHFGSRSQAQ 251
Query: 335 KAIKDTEKYEIDGQVL 350
+A+ + + ++
Sbjct: 252 QAMDALQGIRVSCMLI 267
>gi|67972374|dbj|BAE02529.1| unnamed protein product [Macaca fascicularis]
Length = 414
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 140/252 (55%), Gaps = 16/252 (6%)
Query: 117 EEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFK-GKTI 175
E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI L + + + GK I
Sbjct: 3 EDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFI 61
Query: 176 RCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP--SRNRGFAFVL 233
+S N RLFIG +PK ++E ++ V GV +++I P A ++NRGFAFV
Sbjct: 62 GVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSATDKTKNRGFAFVE 119
Query: 234 YYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTT 293
Y ++ A +R+K+ F+L G+T V WA+P+ D +VK LYV+NL +TT
Sbjct: 120 YESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRVKVLYVRNLMISTT 177
Query: 294 TKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLE 351
+ +K F + G V +V RD+ F+H+ R A+ A+ IDG +E
Sbjct: 178 EETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIE 231
Query: 352 VALARPQTNKRT 363
V LA+P + T
Sbjct: 232 VTLAKPVNKENT 243
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 25/179 (13%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGE-VFEVGLV-KDKDSGESKGFAFVAFRSKEVAKR 160
+FIG +PK+ +E++ D + + E V +V + D +++GFAFV + S A
Sbjct: 69 NCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAM 128
Query: 161 AIDELCSKDFK--GKTIRCSMS--------ETNNR---LFIGNVPKSWTEKEFRKVIEDV 207
A +L F+ G TI+ + ET R L++ N+ S TE+ +
Sbjct: 129 ARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKF 188
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEP 266
PG +E +K + R +AFV ++N A + M +DG + V+ A+P
Sbjct: 189 KPG--AVERVK------KLRDYAFVHFFNREDAVAAMSVMNGKC--IDGASIEVTLAKP 237
>gi|110740397|dbj|BAF02093.1| hypothetical protein [Arabidopsis thaliana]
Length = 809
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 174/344 (50%), Gaps = 16/344 (4%)
Query: 77 DEDKRTASISEDEKEKHDQLLALPPHGS-EVFIGGLPKDASEEDLRDLCEPIGEVFEVGL 135
+E K ++ +E+E HD L E+F+G L K ASEEDL+ + +GEV EV +
Sbjct: 186 EEVKHGETVDVEEEEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRI 245
Query: 136 VKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW 195
+K+ + +SKG AF+ F + E AKRA+ EL S GK + S+ N+ LF+GN+ K W
Sbjct: 246 LKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTLFVGNICKIW 305
Query: 196 TEKEFRKVIEDVG-PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKL 254
T + R+ ++ G +D I L++D + NRG+AF+ + + + A + +++ +
Sbjct: 306 TPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDVMF 365
Query: 255 DGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTP 313
P VS+ + S D +QVK +++ L + +++++L + +G++ KV
Sbjct: 366 GVEKPAKVSFTD--SFLDLEDEIMAQVKTIFIDGLLPSWNEERVRDLLKPYGKLEKVELA 423
Query: 314 PG--KSGKRDFGFIHYAERSSALKAIKDTEKYEI----DGQVLEVALARP--QTNKRTEG 365
+ ++DFGF+ + +A+ K E+ D + L+RP + K +
Sbjct: 424 RNMPSARRKDFGFVTFDTHEAAVSCAKFINNSELGEGEDKAKVRARLSRPLQKAGKGRQS 483
Query: 366 VYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQP 409
S H +G +G SFA S+++ A GAG + P
Sbjct: 484 SRSDQRSRHGAG--RSGRSSFARLPPRSLASSRS-ARGAGSRAP 524
>gi|115459706|ref|NP_001053453.1| Os04g0543200 [Oryza sativa Japonica Group]
gi|38345947|emb|CAE04271.2| OSJNBb0103I08.18 [Oryza sativa Japonica Group]
gi|38345949|emb|CAE04337.2| OSJNBb0038F03.1 [Oryza sativa Japonica Group]
gi|113565024|dbj|BAF15367.1| Os04g0543200 [Oryza sativa Japonica Group]
gi|215678877|dbj|BAG95314.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215717042|dbj|BAG95405.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 774
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 145/264 (54%), Gaps = 16/264 (6%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+GGL KDA+E DLR + +GE+ EV L+ + + ++KGFAF+ + + E A+RA+ E
Sbjct: 191 EVFVGGLDKDATESDLRKVFGEVGEITEVRLMMNPVTKKNKGFAFLRYATVEQARRAVSE 250
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAP 223
L + +GK + S N+ LF+GN+ K+WT++ ++ ++ G D + L++D P
Sbjct: 251 LKNPSVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKEKLKSYGVENFDDLLLVEDSNNP 310
Query: 224 SRNRGFAFVLYYNN--ACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
NRG+A + + A + R + F +D + VS+A+ S P+ +QV+
Sbjct: 311 GMNRGYALLEFSTRPEAMDAFRRLQKRDVVFGVD-RSAKVSFAD--SYPEVDDEIMAQVR 367
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKV----VTPPGKSGKRDFGFIHYAERSSALKA- 336
+++ LP + ++K+ +++G + KV P K ++DFGF+ + +A+
Sbjct: 368 TVFIDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAK--RKDFGFVTFDTHDNAVACA 425
Query: 337 --IKDTEKYEIDGQV-LEVALARP 357
I ++E E D + + L+RP
Sbjct: 426 DGITNSEIGEGDSKAKVRARLSRP 449
>gi|224067534|ref|XP_002302501.1| predicted protein [Populus trichocarpa]
gi|222844227|gb|EEE81774.1| predicted protein [Populus trichocarpa]
Length = 341
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 147/261 (56%), Gaps = 10/261 (3%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+GGL KDA+E+DLR + +GEV EV L+ + + ++KGFAF+ F + E AKRA+ E
Sbjct: 33 EVFVGGLDKDATEDDLRKIFSRVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAKRAVTE 92
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAP 223
L + GK + S+ ++ LF+GN+ K+WT++ ++ ++ G V + L++D
Sbjct: 93 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVKDLTLVEDSNNA 152
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKA 282
NRGFAF+ + + + A + +++ + + P VS+A+ P A QVK
Sbjct: 153 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMA--QVKT 210
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPG--KSGKRDFGFIHYAERSSAL---KAI 337
+++ LP + +++ L +++GE+ K+ + ++DFGF+ + +A+ K+I
Sbjct: 211 VFIDGLPASWDEDRVRVLLKKYGEIEKIELARNMPSARRKDFGFVTFDTHDAAVTCAKSI 270
Query: 338 KDTEKYEIDGQV-LEVALARP 357
+ E E D + + L+RP
Sbjct: 271 NNAELGEGDNKAKVRARLSRP 291
>gi|30689808|ref|NP_850422.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|20147226|gb|AAM10328.1| At2g44720/F16B22.21 [Arabidopsis thaliana]
gi|23308467|gb|AAN18203.1| At2g44720/F16B22.21 [Arabidopsis thaliana]
gi|330255364|gb|AEC10458.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 809
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 174/344 (50%), Gaps = 16/344 (4%)
Query: 77 DEDKRTASISEDEKEKHDQLLALPPHGS-EVFIGGLPKDASEEDLRDLCEPIGEVFEVGL 135
+E K ++ +E+E HD L E+F+G L K ASEEDL+ + +GEV EV +
Sbjct: 186 EEVKHGETVDVEEEEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRI 245
Query: 136 VKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW 195
+K+ + +SKG AF+ F + E AKRA+ EL S GK + S+ N+ LF+GN+ K W
Sbjct: 246 LKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTLFVGNICKIW 305
Query: 196 TEKEFRKVIEDVG-PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKL 254
T + R+ ++ G +D I L++D + NRG+AF+ + + + A + +++ +
Sbjct: 306 TPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDVMF 365
Query: 255 DGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTP 313
P VS+ + S D +QVK +++ L + +++++L + +G++ KV
Sbjct: 366 GVEKPAKVSFTD--SFLDLEDEIMAQVKTIFIDGLLPSWNEERVRDLLKPYGKLEKVELA 423
Query: 314 PG--KSGKRDFGFIHYAERSSALKAIKDTEKYEI----DGQVLEVALARP--QTNKRTEG 365
+ ++DFGF+ + +A+ K E+ D + L+RP + K +
Sbjct: 424 RNMPSARRKDFGFVTFDTHEAAVSCAKFINNSELGEGEDKAKVRARLSRPLQKAGKGRQS 483
Query: 366 VYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQP 409
S H +G +G SFA S+++ A GAG + P
Sbjct: 484 SRSDQRSRHGAG--RSGRSSFARLPPRSLASSRS-ARGAGSRAP 524
>gi|224136394|ref|XP_002326849.1| predicted protein [Populus trichocarpa]
gi|222835164|gb|EEE73599.1| predicted protein [Populus trichocarpa]
Length = 343
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 146/261 (55%), Gaps = 10/261 (3%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
E+F+GGL KDA+E+DLR + +GEV E L+ + + ++KGFAF+ F + E AKRA+ E
Sbjct: 33 EIFVGGLDKDATEDDLRKVFSRVGEVTEARLMMNPQTKKNKGFAFLRFATVEQAKRAVTE 92
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAP 223
L + GK + S+ ++ LF+GN+ K+WT++ ++ ++ G V+ + L++D
Sbjct: 93 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDLTLVEDSNNL 152
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKA 282
NRGFAF+ + + + A + +++ + + P VS+A+ P A QVK
Sbjct: 153 GMNRGFAFLEFSSRSDAMNAFKRLQKRDVLFGVDRPAKVSFADSFIGPGDEIMA--QVKT 210
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPG--KSGKRDFGFIHYAERSSAL---KAI 337
L++ LP + + + L +++G + K+ + ++DFGF+ + +A+ K+I
Sbjct: 211 LFIDGLPASWDEDRFRVLLKKYGNIEKIELARNMPSARRKDFGFVTFDTHDAAVACAKSI 270
Query: 338 KDTEKYEIDGQV-LEVALARP 357
+ E E D +V + L+RP
Sbjct: 271 NNVELGEGDNKVKVRARLSRP 291
>gi|225462858|ref|XP_002270102.1| PREDICTED: uncharacterized protein LOC100266805 [Vitis vinifera]
Length = 719
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/343 (29%), Positives = 169/343 (49%), Gaps = 31/343 (9%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+GGL +D +E+DL +G++ EV L+K+ + ++KGFAF+ F + E A+RA++E
Sbjct: 126 EVFVGGLDRDVTEDDLFHFFRQVGDITEVRLMKNALTQKNKGFAFIRFATVEQARRAVNE 185
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE---LIKDPQ 221
L GK + S+ ++ LF+GN+ K+WT+ + + GVD E L++D +
Sbjct: 186 LKHPVINGKQCGVAPSQDSDTLFVGNICKTWTKVAVKDKL--AYYGVDKYEDLTLVEDTK 243
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSAN--FKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
NRGFAF+ + + A A + +++ + F D T V++A+ PD SQ
Sbjct: 244 NEGMNRGFAFLDFSSRADALEACKRLQKRDVVFGTD-RTARVAFADTFIEPDDE--IMSQ 300
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKV----VTPPGKSGKRDFGFIHYAERSSALK 335
V+ +++ LP ++++ ++ G + K+ P K + DFGF+ + SA+
Sbjct: 301 VRTIFLDGLPATWDEDRVRDYLKKFGRIEKIELARNMPAAK--RTDFGFVTFDTHDSAVA 358
Query: 336 AIKDTEKYE-IDGQVL---EVALARP----QTNKRTEGVYSCAAGV-----HPSGLPHAG 382
+ E +DG+ L L+RP ++ K G Y A G P G +
Sbjct: 359 CVDSINNSELVDGERLVKVRARLSRPRQRGKSAKHARGGYLVAQGSGRGFKAPWGSSSSR 418
Query: 383 YGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVP 425
S+ T G S A GL++P+ G + M MVP
Sbjct: 419 MDSWKFTGRGGRSMQTRGAYDGGLKRPV--GPRDRHSMMEMVP 459
>gi|207080144|ref|NP_001128783.1| DKFZP469N2326 protein [Pongo abelii]
gi|55727921|emb|CAH90713.1| hypothetical protein [Pongo abelii]
Length = 550
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 122/231 (52%), Gaps = 12/231 (5%)
Query: 130 VFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFK-GKTIRCSMSETNNRLFI 188
++E+ L+ D D G+++G+AFV + K AKRA+ EL + + + G+ + S N RLFI
Sbjct: 54 IYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGACCSVDNCRLFI 112
Query: 189 GNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMT 248
G +PK +E + I V GV + + +NRGFAFV Y ++ A +R+K+
Sbjct: 113 GGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 172
Query: 249 SANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRH--GE 306
+L G+ V WAEP+ D VK LYV+NL TT +K+ F + G
Sbjct: 173 PGRIQLWGHQIAVDWAEPEIDVDED--VMETVKILYVRNLMIETTEDTIKKSFGQFNPGC 230
Query: 307 VTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357
V +V RD+ F+H+ R A+ A+ + E++G LEV LA+P
Sbjct: 231 VERV------KKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 275
>gi|296087486|emb|CBI34075.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 100/343 (29%), Positives = 169/343 (49%), Gaps = 31/343 (9%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+GGL +D +E+DL +G++ EV L+K+ + ++KGFAF+ F + E A+RA++E
Sbjct: 187 EVFVGGLDRDVTEDDLFHFFRQVGDITEVRLMKNALTQKNKGFAFIRFATVEQARRAVNE 246
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE---LIKDPQ 221
L GK + S+ ++ LF+GN+ K+WT+ + + GVD E L++D +
Sbjct: 247 LKHPVINGKQCGVAPSQDSDTLFVGNICKTWTKVAVKDKLAYY--GVDKYEDLTLVEDTK 304
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSAN--FKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
NRGFAF+ + + A A + +++ + F D T V++A+ PD SQ
Sbjct: 305 NEGMNRGFAFLDFSSRADALEACKRLQKRDVVFGTD-RTARVAFADTFIEPDDE--IMSQ 361
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKV----VTPPGKSGKRDFGFIHYAERSSALK 335
V+ +++ LP ++++ ++ G + K+ P K + DFGF+ + SA+
Sbjct: 362 VRTIFLDGLPATWDEDRVRDYLKKFGRIEKIELARNMPAAK--RTDFGFVTFDTHDSAVA 419
Query: 336 AIKDTEKYE-IDGQVL---EVALARP----QTNKRTEGVYSCAAGV-----HPSGLPHAG 382
+ E +DG+ L L+RP ++ K G Y A G P G +
Sbjct: 420 CVDSINNSELVDGERLVKVRARLSRPRQRGKSAKHARGGYLVAQGSGRGFKAPWGSSSSR 479
Query: 383 YGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVP 425
S+ T G S A GL++P+ G + M MVP
Sbjct: 480 MDSWKFTGRGGRSMQTRGAYDGGLKRPV--GPRDRHSMMEMVP 520
>gi|322780793|gb|EFZ10022.1| hypothetical protein SINV_02126 [Solenopsis invicta]
Length = 381
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 133/259 (51%), Gaps = 10/259 (3%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G+E+F+G LP+D E++L L E +G + E+ L+ D SG ++G+AF + +A+ A
Sbjct: 43 GAEIFLGRLPRDCYEDELMPLLEQVGRLLELRLMLD-FSGSTRGYAFALYEDPRIAREAC 101
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+ L + + G I S N RLF G VPK+ T+ EF + + + G+ I + + Q
Sbjct: 102 ERLNGHEIRPGHRIGVVKSMDNCRLFFGGVPKNKTKLEFLEELTKILDGIVDIYVYPNAQ 161
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
S NRGF FV + ++ A +R+K+ L + V WA+P+ V
Sbjct: 162 NRSLNRGFIFVEFRDHRAAAMARRKLIPGKVMLWDHEIAVDWADPEPGDPVDEDIMETVT 221
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD-FGFIHYAERSSALKAIKDT 340
AL+V+NL + +++KE+ RH V P K K + F FIHY R +A +
Sbjct: 222 ALFVRNLSIDMPQQKVKEIIYRHTNV-----PILKLKKINHFAFIHYESREAAQTVMDIM 276
Query: 341 EKYE--IDGQVLEVALARP 357
+K + ++ Q EV A+P
Sbjct: 277 QKPDSIVEQQGWEVRWAKP 295
>gi|313216719|emb|CBY37974.1| unnamed protein product [Oikopleura dioica]
Length = 580
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 142/272 (52%), Gaps = 29/272 (10%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGE--VFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
E FIG L +DA E D+ L E + E V+E+ L+ D G+S+GFAFV+F A+R
Sbjct: 211 ECFIGSLHRDAFEPDIWTLLEEVPEATVYEIRLMMGYD-GKSRGFAFVSFVEDGAAQRCK 269
Query: 163 DELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L +K F K + ++S R+FIG++PK ++++F + + + G + +
Sbjct: 270 ALLDTKQFMEKKLHVNVSIPATRIFIGSIPKDKSKQQFEEELTNNGVSTWVVNQSQKDNG 329
Query: 223 PSRNRGFAFVLY-------------YNNACADYS--RQKMTSANFKLDGN-TPTVSWAEP 266
S NRGFAFV + +N Y ++ + + + L G V WA+P
Sbjct: 330 AS-NRGFAFVEFESHMDASTVKVQSFNKLHLFYECFKKNLLNRSLALFGRYYQNVDWADP 388
Query: 267 KSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIH 326
++TPD + S VK LYVK E T +++K LF+ +G V KV +F F+H
Sbjct: 389 ENTPDDN--VMSTVKNLYVKGWSEARTEEEIKALFEPYGVVEKV------KKINNFSFVH 440
Query: 327 YAERSSALKAIKDTEKYEI-DGQVLEVALARP 357
+ ER SALKAI+ + +V++V+LA+P
Sbjct: 441 FVERDSALKAIEAMNGKNFGNDEVIDVSLAKP 472
>gi|326497027|dbj|BAK02098.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 776
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 135/250 (54%), Gaps = 16/250 (6%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+GGL KDA+E DLR + +GE+ EV L+ + + ++KGFAF+ F + E AKRA+ +
Sbjct: 195 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 254
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFR---KVIEDVGPGVDTIELIKDPQ 221
L + +GK + S N+ LF+GN+ K+WT++ + K+ E D + L++D
Sbjct: 255 LKNPMVRGKQCGVAPSRDNDTLFVGNICKTWTKEHLKDKLKIYE--VENFDDLILVEDSN 312
Query: 222 APSRNRGFAFVLYYNN--ACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
P NRG+A + + A + R + F +D T VS+A+ S P+ +Q
Sbjct: 313 NPGMNRGYALLEFSTRPEAMDAFRRLQKRDVVFGVD-RTAKVSFAD--SYPEVDDEMMAQ 369
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKV----VTPPGKSGKRDFGFIHYAERSSALK 335
V+ +++ LP + ++K+ +++G + KV P K ++DFGF+ + +A+
Sbjct: 370 VRTVFLDGLPPSWEEDRVKKYLKKYGAIEKVELARNMPAAK--RKDFGFVTFDTHDNAVA 427
Query: 336 AIKDTEKYEI 345
+ EI
Sbjct: 428 CVDGITSSEI 437
>gi|355561882|gb|EHH18514.1| hypothetical protein EGK_15134, partial [Macaca mulatta]
Length = 434
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 104/178 (58%), Gaps = 1/178 (0%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA 335
>gi|356503232|ref|XP_003520415.1| PREDICTED: uncharacterized protein LOC100779340 [Glycine max]
Length = 816
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 143/262 (54%), Gaps = 12/262 (4%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+GGL KDA+E DLR +G V EV L+ + + ++KGFAF+ F + E AKRA+ E
Sbjct: 233 EVFVGGLDKDATESDLRKAFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAE 292
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAP 223
L + GK + S+ ++ L++GN+ K+WT++ ++ ++ G V+ + L++D
Sbjct: 293 LKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDE 352
Query: 224 SRNRGFAFVLY--YNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAF+ + + A + R + F +D VS+A+ S D +QVK
Sbjct: 353 GKNRGFAFLEFPSRSEAMDAFKRLQRRDVVFGVD-KPAKVSFAD--SFIDPGDEIMAQVK 409
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKR--DFGFIHYAERSSALK---A 336
+++ LP + +++L +++GE+ K+ R D+GF+ + +A+K +
Sbjct: 410 TVFIDALPPSWDEDYVRDLLRKYGEIEKIELARNMPAARRKDYGFVTFGSHDAAVKCADS 469
Query: 337 IKDTEKYEIDGQV-LEVALARP 357
I TE E D + + L+RP
Sbjct: 470 ITGTELGEGDKKAKVRARLSRP 491
>gi|332026193|gb|EGI66335.1| APOBEC1 complementation factor [Acromyrmex echinatior]
Length = 466
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 133/259 (51%), Gaps = 10/259 (3%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G+EVF+G LP+D E++L L E +G + E+ L+ D SG ++G+AF F VA+ A
Sbjct: 54 GAEVFLGRLPRDCYEDELMPLLEQVGRLLELRLMLDF-SGSTRGYAFALFEDSRVARIAC 112
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+ L + + G I S N RLF G VPK+ T+ EF + + + G+ I + Q
Sbjct: 113 ERLDGYEIRPGHRIGVVKSMDNCRLFFGGVPKTKTKPEFMEELTKILDGITDIYVYPSAQ 172
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+ NRGF FV + ++ A +R+K+ L + V WA+P+ V
Sbjct: 173 DRNLNRGFIFVEFKDHRAAAMARRKLIPGKVMLWDHEIAVDWADPEPGDPIDEDIMETVT 232
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD-FGFIHYAERSSALKAIKDT 340
AL+V+NL + + ++++E+ R+ V P K K + F F+HY R +A +
Sbjct: 233 ALFVRNLALDMSQQKVREILYRYTNV-----PILKLKKINHFAFVHYENREAAKTVMNIM 287
Query: 341 EKYE--IDGQVLEVALARP 357
E+ + ++ Q E+ A+P
Sbjct: 288 ERPDSIVEKQGWEIRWAKP 306
>gi|356522972|ref|XP_003530116.1| PREDICTED: uncharacterized protein LOC100777658 [Glycine max]
Length = 866
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 132/237 (55%), Gaps = 8/237 (3%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+GGL KDA+E DLR + +G V EV L+ + + ++KGFAF+ F + E AKRA+ E
Sbjct: 283 EVFVGGLDKDATESDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAE 342
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAP 223
L + GK + S+ ++ L++GN+ K+WT++ ++ ++ G V+ + L++D
Sbjct: 343 LKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDE 402
Query: 224 SRNRGFAFVLY--YNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAF+ + + A + R + F +D VS+A+ S D +QVK
Sbjct: 403 GKNRGFAFLEFPSRSEAMDAFKRLQRRDVVFGVD-KLAKVSFAD--SFIDPGDEIMAQVK 459
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKR--DFGFIHYAERSSALKA 336
+++ LP + +++L +++GE+ K+ R D+GF+ + +A+K
Sbjct: 460 TVFIDALPPSWDEDYVRDLLRKYGEIEKIELARNMPAARRKDYGFVTFGTHDAAVKC 516
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI LP E+ +RDL GE+ ++ L ++ + K + FV F + + A + D +
Sbjct: 461 VFIDALPPSWDEDYVRDLLRKYGEIEKIELARNMPAARRKDYGFVTFGTHDAAVKCADSI 520
Query: 166 CSKDF----KGKTIRCSMSETNNR 185
+ K +R +S R
Sbjct: 521 TGTELGEGHKKAKVRARLSRPLQR 544
>gi|357165062|ref|XP_003580257.1| PREDICTED: uncharacterized protein LOC100827844 [Brachypodium
distachyon]
Length = 783
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 135/248 (54%), Gaps = 12/248 (4%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+GGL KDA+E DLR + +GE+ EV L+ + + ++KGFAF+ + + E A+RA+ +
Sbjct: 200 EVFVGGLDKDATESDLRKVFSEVGEISEVRLMMNPVTKKNKGFAFLRYATVEQARRAVSD 259
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAP 223
L + +GK + S N+ LF+GN+ K+WT++ + ++ D + L++D P
Sbjct: 260 LKNPLVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKDKLKSYEVENFDDLILVEDSNNP 319
Query: 224 SRNRGFAFVLYYNN--ACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
NRG+A + + A + R + A F +D + VS+A+ S P+ +QV+
Sbjct: 320 GMNRGYALLEFSTRPEAMDAFRRLQKRDAVFGVD-RSAKVSFAD--SYPEVDDEMMAQVR 376
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKV----VTPPGKSGKRDFGFIHYAERSSALKAI 337
+++ LP + ++K+ +++G + KV P K ++DFGF+ + +A+ +
Sbjct: 377 TIFLDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAK--RKDFGFVTFDTHDNAVACV 434
Query: 338 KDTEKYEI 345
EI
Sbjct: 435 DGITSSEI 442
>gi|426221982|ref|XP_004005184.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Ovis aries]
Length = 598
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 137/266 (51%), Gaps = 44/266 (16%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y DH +AA
Sbjct: 281 QPDDKKKNRGFCFLEY-----------------------------------EDHKSAA-- 303
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
QVK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 304 QVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 357
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 358 EMNGKEIEGEEIEIVLAKPPDKKRKE 383
>gi|355715825|gb|AES05414.1| RNA binding motif protein 47 [Mustela putorius furo]
Length = 387
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 114/219 (52%), Gaps = 11/219 (5%)
Query: 142 GESKGFAFVAFRSKEVAKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEF 200
G+++G+AFV + K AKRA+ EL + + + G+ + S N RLFIG +PK +E
Sbjct: 1 GKNRGYAFVMYCHKSEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 60
Query: 201 RKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
+ I V GV + + +NRGFAFV Y ++ A +R+K+ +L G+
Sbjct: 61 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 120
Query: 261 VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSG 318
V WAEP+ D VK LYV+NL TT +K+ F + G V +V
Sbjct: 121 VDWAEPEIDVDED--VMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KK 172
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357
RD+ F+H+ R A+ A+ + E++G LEV LA+P
Sbjct: 173 IRDYAFVHFVSREDAVHAMNNLNGTELEGSCLEVTLAKP 211
>gi|324501089|gb|ADY40490.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 418
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 108/192 (56%), Gaps = 10/192 (5%)
Query: 173 KTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA--PSRNRGFA 230
K ++ ++S N RLFIGN+PKS +++E ++ GV + P A +NRGF
Sbjct: 9 KNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPDAGESRKNRGFC 68
Query: 231 FVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPE 290
F+ + ++ A +++K+ + + V WAE + PD A +VK LYV+NL E
Sbjct: 69 FLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWAEQQEEPDEETMA--KVKVLYVRNLKE 126
Query: 291 NTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVL 350
T +QLKE+F HGEV V +D+ FIH+ ER A+KA++ ++G +
Sbjct: 127 AVTEEQLKEMFSAHGEVDHV------KKIKDYAFIHFNEREPAVKAMEALNGTVLEGVPI 180
Query: 351 EVALARPQTNKR 362
E++LA+PQ++K+
Sbjct: 181 EISLAKPQSDKK 192
>gi|340711039|ref|XP_003394089.1| PREDICTED: APOBEC1 complementation factor-like [Bombus terrestris]
Length = 471
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 124/233 (53%), Gaps = 8/233 (3%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G+E+F+G LP+D E++L + E +G + E+ L+ D SG ++G+AF F + ++A+ A
Sbjct: 56 GAEIFLGRLPRDCYEDELMPMLETVGRLIELRLMLD-FSGSTRGYAFALFENSKIARSAC 114
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+L + + G I S N RLF G VPK+ ++EF + + + G+ I L
Sbjct: 115 AKLDGYEIRHGHRIGVVKSVDNCRLFFGGVPKNKCKEEFMQELNKILEGIIDIYLYPSAH 174
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+ NRGF FV + ++ A +R+K+ L + V WA+P+ V
Sbjct: 175 DKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEEVMENVT 234
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD-FGFIHYAERSSA 333
AL+V+NL N ++++++FQ++ ++ P K K + F F+HY R +A
Sbjct: 235 ALFVRNLSLNMPQQKIRDIFQKNTKI-----PILKLKKINHFAFVHYENRKAA 282
>gi|350400746|ref|XP_003485944.1| PREDICTED: APOBEC1 complementation factor-like [Bombus impatiens]
Length = 463
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 124/233 (53%), Gaps = 8/233 (3%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G+E+F+G LP+D E++L + E +G + E+ L+ D SG ++G+AF F + ++A+ A
Sbjct: 45 GAEIFLGRLPRDCYEDELMPMLETVGRLIELRLMLD-FSGSTRGYAFALFENSKIARSAC 103
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+L + + G I S N RLF G VPK+ ++EF + + + G+ I L
Sbjct: 104 AKLDGYEIRHGHRIGVVKSVDNCRLFFGGVPKNKCKEEFMQELNKILEGIIDIYLYPSAH 163
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+ NRGF FV + ++ A +R+K+ L + V WA+P+ V
Sbjct: 164 DKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEEVMENVT 223
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD-FGFIHYAERSSA 333
AL+V+NL N ++++++FQ++ ++ P K K + F F+HY R +A
Sbjct: 224 ALFVRNLSLNMPQQKIRDIFQKNTKI-----PILKLKKINHFAFVHYENRKAA 271
>gi|332834232|ref|XP_001162562.2| PREDICTED: APOBEC1 complementation factor isoform 3 [Pan
troglodytes]
Length = 502
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 104/344 (30%), Positives = 163/344 (47%), Gaps = 44/344 (12%)
Query: 141 SGESKGFAFVAFRSKEVAKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKE 199
+G ++G+AFV F +K AK AI +L + + + G+ + S N RLF+G +PK+ +E
Sbjct: 8 NGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 67
Query: 200 FRKVIEDVGPGVDTIELIKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGN 257
++ V GV +++I P A ++NRGFAFV Y ++ A +R+K+ +L G+
Sbjct: 68 ILSEMKKVTEGV--VDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGH 125
Query: 258 TPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPG 315
V WAEP+ D S VK LYV+NL +T+ + +++ F + G V +V
Sbjct: 126 GIAVDWAEPEVEVDED--TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV----- 178
Query: 316 KSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHP 375
RD+ F+H++ R A++A+K +DG +EV LA+P +K + Y+ G
Sbjct: 179 -KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRG 236
Query: 376 SGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGY 435
+ L Y G Y +T LG P+ Y P +P
Sbjct: 237 TML-QGEYTYSLGQVYDPTTTYLGA--------PVFYA----PQTYAAIPN--------- 274
Query: 436 VLQQPGVQMPLPPPRPRRVERGPGGRGASSGGSDGSSGRRYRPY 479
L P + L R + R P RGA+ G G GR Y Y
Sbjct: 275 -LHFPATKGHL---SNRAIIRAPSVRGAA--GVRGLGGRGYLAY 312
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 29/178 (16%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGE-VFEVGLVKDK-DSGESKGFAFVAFRSKEVAKRAID 163
+F+GG+PK E++ + + E V +V + D +++GFAFV + S A A
Sbjct: 54 LFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARR 113
Query: 164 ELCSKDFK--GKTIRCSMSE-----------TNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
+L + G I +E + L++ N+ S +E+ K ++ PG
Sbjct: 114 KLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG 173
Query: 211 -VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEP 266
V+ ++ I+D +AFV + N A + M + N K LDG+ V+ A+P
Sbjct: 174 AVERVKKIRD---------YAFVHFSNREDA---VEAMKALNGKVLDGSPIEVTLAKP 219
>gi|323650030|gb|ADX97101.1| APOBEC1 complementation factor [Perca flavescens]
Length = 450
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 121/222 (54%), Gaps = 15/222 (6%)
Query: 141 SGESKGFAFVAFRSKEVAKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKE 199
+G ++G+AFV F +K AK A+ +L + + + G+ + S N RLF+G +PK+ +E
Sbjct: 2 NGNNRGYAFVTFGNKLEAKAAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 61
Query: 200 FRKVIEDVGPGVDTIELIKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGN 257
+ V GV +++I P A S+NRGFAFV Y ++ A +R+K+ +L G+
Sbjct: 62 ILTEMRKVTDGV--VDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGH 119
Query: 258 TPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPG 315
V WAEP+ D A+ VK LYV+NL TT + +++ F R G V +V
Sbjct: 120 AIAVDWAEPEVEVDEDTMAS--VKILYVRNLMLQTTEETIEKEFNSLRPGAVERV----- 172
Query: 316 KSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357
RD+ F+H+ +R A+ A+ +DG +EV LA+P
Sbjct: 173 -KKIRDYAFVHFTQREDAINAMNALNGKVVDGSPIEVTLAKP 213
>gi|195569361|ref|XP_002102678.1| GD19374 [Drosophila simulans]
gi|194198605|gb|EDX12181.1| GD19374 [Drosophila simulans]
Length = 350
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 111/191 (58%), Gaps = 8/191 (4%)
Query: 172 GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAF 231
GK ++ ++S N RLF+GN+PKS + E + + G+ + + P +NRGF F
Sbjct: 13 GKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCF 72
Query: 232 VLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPEN 291
+ Y ++ A +++++ + K+ G V WA+P+ PD S+VK LYV+NL ++
Sbjct: 73 LEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ--TMSKVKVLYVRNLTQD 130
Query: 292 TTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLE 351
+ +LKE F+++G+V +V +D+ FIH+ +R SA++A++ EI +E
Sbjct: 131 VSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMRGLNGKEIGASNIE 184
Query: 352 VALARPQTNKR 362
V+LA+P ++K+
Sbjct: 185 VSLAKPPSDKK 195
>gi|383850788|ref|XP_003700956.1| PREDICTED: APOBEC1 complementation factor-like [Megachile
rotundata]
Length = 479
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 125/240 (52%), Gaps = 9/240 (3%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G+E+F+G LP+D E++L + E +G + E+ L+ D SG ++G+AF F + A+ A
Sbjct: 60 GAEIFLGRLPRDCYEDELMPMLEKVGRLMELRLMLD-FSGSTRGYAFALFEDSKTARNAC 118
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+L + + G I S N RLF G VPK+ +++EF + + G+ I L
Sbjct: 119 AKLDGYEVRPGHRIGVVKSVDNCRLFFGGVPKNKSKEEFMTELNKILEGITDIYLYPSAH 178
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
S NRGF FV + ++ A +R+K+ L + V WA+P+ V
Sbjct: 179 DKSLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEDVMENVT 238
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD-FGFIHYAERSSALKAIKDT 340
AL+V+NL + ++++E+FQ+ ++ P K K + F FIHY R +A +A+ D
Sbjct: 239 ALFVRNLSLDVQQQKIREIFQKSTKI-----PILKLKKINHFAFIHYESRQAA-QAVMDI 292
>gi|9502153|gb|AAF88006.1| contains similarity to Pfam family PF00076 (RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)), score=42.1,
E=1.3e-08, N=1 [Arabidopsis thaliana]
Length = 298
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 100/216 (46%), Gaps = 91/216 (42%)
Query: 135 LVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKS 194
++++K+ G+ KG+ FV FR K++A AID L NN +F
Sbjct: 107 IMREKEPGDGKGYPFVTFRCKDLAAEAIDNL-----------------NNTVF------- 142
Query: 195 WTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKL 254
++PQ RNRGFAF+ YYN+
Sbjct: 143 -----------------------REPQNMGRNRGFAFIEYYNH----------------- 162
Query: 255 DGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPP 314
VKALY+KNLP + T ++LK LF+ HG++ KVV PP
Sbjct: 163 -------------------------VKALYIKNLPRDITQERLKALFEHHGKILKVVIPP 197
Query: 315 GKSGKRD--FGFIHYAERSSALKAIKDTEKYEIDGQ 348
K GK D +GF+HYAER+S ++A+K+TE+YEIDG
Sbjct: 198 AKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDGH 233
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 310 VVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYS 368
V P G+ R F FI Y AL IK+ L R T +R + ++
Sbjct: 141 VFREPQNMGRNRGFAFIEYYNHVKAL-YIKN--------------LPRDITQERLKALFE 185
Query: 369 CAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGR-GQMPAGMHMVPMV 427
+ +P A G + YG V + L+ Y G GM M+P++
Sbjct: 186 HHGKILKVVIPPAKPGK-EDSRYGFVHYAERTSVMRALKNTERYEIDGHAAGGMSMMPIM 244
Query: 428 LPDGRIGYVLQQPGV 442
LPDGRI YVLQQPG+
Sbjct: 245 LPDGRIRYVLQQPGL 259
>gi|328786224|ref|XP_001120281.2| PREDICTED: APOBEC1 complementation factor-like [Apis mellifera]
Length = 477
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 133/254 (52%), Gaps = 17/254 (6%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G+E+F+G LP+D E++L + E IG + E+ L+ D SG ++G+AF +F + A+RA
Sbjct: 60 GAEIFLGRLPRDCYEDELMPVLETIGYLIELRLMLD-FSGSTRGYAFASFEDVKTARRAC 118
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+L + + G I S N RLF G VPK+ +++EF + + + G+ I L
Sbjct: 119 AKLDGYEIRPGHRIGVVKSVDNCRLFFGGVPKNKSKEEFMQELTKILEGIIDIYLYPSAH 178
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+ NRGF FV + ++ A +R+K+ L + V WA+P+ V
Sbjct: 179 DKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEEIMESVT 238
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD-FGFIHYAERSSALKA---- 336
AL+V+NL + + ++++++FQ++ ++ P K K + F F+HY R +A
Sbjct: 239 ALFVRNLNLDMSQQKVRDIFQKNTKI-----PILKLKKINHFAFVHYENRQAAQTVMDIM 293
Query: 337 -----IKDTEKYEI 345
I D+E +EI
Sbjct: 294 TRSNGIADSEGWEI 307
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 25/181 (13%)
Query: 103 GSEVFIGGLPKDAS-EEDLRDLCEPIGEVFEVGLV-KDKDSGESKGFAFVAF---RSKEV 157
+F GG+PK+ S EE +++L + + + ++ L D ++GF FV F R+ +
Sbjct: 140 NCRLFFGGVPKNKSKEEFMQELTKILEGIIDIYLYPSAHDKTLNRGFIFVEFKDHRAAAM 199
Query: 158 AKRAI--------DELCSKDFK----GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIE 205
A+R + D + D+ G I + E+ LF+ N+ ++++ R + +
Sbjct: 200 ARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEEIMESVTALFVRNLNLDMSQQKVRDIFQ 259
Query: 206 DVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAE 265
+ ++L K FAFV Y N A MT +N D + WA+
Sbjct: 260 K-NTKIPILKLKKINH-------FAFVHYENRQAAQTVMDIMTRSNGIADSEGWEIRWAK 311
Query: 266 P 266
P
Sbjct: 312 P 312
>gi|380014848|ref|XP_003691428.1| PREDICTED: APOBEC1 complementation factor-like [Apis florea]
Length = 442
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 126/233 (54%), Gaps = 8/233 (3%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G+E+F+G LP+D E++L + E IG + E+ L+ D SG ++G+AF +F + A+RA
Sbjct: 54 GAEIFLGRLPRDCYEDELMPVLETIGYLIELRLMLD-FSGSTRGYAFASFEDVKTARRAC 112
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
+L + + G I S N RLF G VPK+ +++EF + + + G+ I L
Sbjct: 113 AKLDGYEIRPGHRIGVVKSVDNCRLFFGGVPKNKSKEEFMQELTKILEGIIDIYLYPSAH 172
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+ NRGF FV + ++ A +R+K+ L + V WA+P+ V
Sbjct: 173 DKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEEIMESVT 232
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD-FGFIHYAERSSA 333
AL+V+NL + + ++++++FQ++ ++ P K K + F F+HY R +A
Sbjct: 233 ALFVRNLSLDMSQQKVRDIFQKNTKI-----PILKLKKINHFAFVHYESRQAA 280
>gi|307181116|gb|EFN68850.1| Probable RNA-binding protein 46 [Camponotus floridanus]
Length = 471
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 128/259 (49%), Gaps = 10/259 (3%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
GSE+F+G LP+D E++L + E +G + E+ L+ D SG ++G+AF + + +A+ A
Sbjct: 53 GSEIFLGRLPRDCYEDELMPVLEQVGRLLELRLMLDF-SGSTRGYAFALYETPRIAREAC 111
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
L + + G I S N RLF G VPK+ T+ EF + + + I L
Sbjct: 112 RRLDGYEIRRGHRIGVVKSMDNCRLFFGGVPKNKTKPEFMAELTKMLDDITDIYLYPSAH 171
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
S NRGF FV + ++ A +R+K+ L + V WA+P+ +V
Sbjct: 172 DRSLNRGFIFVEFKDHRAAAMARRKLIPGKVTLWDHEIAVDWADPEPGEPIDEDIMERVT 231
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD-FGFIHYAERSSALKAIKDT 340
L+V+NL + + + ++ +F RH V P K K + F FIHY R +A +
Sbjct: 232 TLFVRNLALDISQQNVRGIFHRHTNV-----PILKLKKINHFAFIHYENRQAAQIVMDIM 286
Query: 341 EK--YEIDGQVLEVALARP 357
+K ++ Q E+ A+P
Sbjct: 287 QKPGSIVEKQGWEICWAKP 305
>gi|242047592|ref|XP_002461542.1| hypothetical protein SORBIDRAFT_02g004470 [Sorghum bicolor]
gi|241924919|gb|EER98063.1| hypothetical protein SORBIDRAFT_02g004470 [Sorghum bicolor]
Length = 551
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 133/261 (50%), Gaps = 10/261 (3%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+EVF+ GL EED+R + GE+ +V + D + +SKG+ FV +R AK+ +
Sbjct: 267 TEVFVCGLDGSMKEEDVRSVFGWAGEITQVRMAMDARTWKSKGYCFVRYREPSQAKKVVA 326
Query: 164 ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQA 222
E C K + + N+++ + N+ K W +++ K++ G +D + L+ D
Sbjct: 327 EFCKWKICWKLCQVEAVDGNDKIVLENIDKKWKKEDIMKLLHKTGVENIDKVTLMADCDN 386
Query: 223 PSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKA 282
P N G+AF+ A + K++ TV+WA+ S D QVK+
Sbjct: 387 PGYNCGYAFLELETERDAWMAYIKLSRKGVFRRCLNITVAWAKAMSDRDEE---MQQVKS 443
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGKR-DFGFIHYAERSSALKAIKDT 340
++V+ +PE+ +L E+F ++G + + V++ +S KR DF F+HY +A+ ++
Sbjct: 444 IFVEGIPESWDNLKLTEIFSKYGVIQRTVLSHDIQSAKRSDFAFVHYTTHEAAILCLELF 503
Query: 341 EKYEIDGQ----VLEVALARP 357
+K E+ G ++V+L +P
Sbjct: 504 DKEELTGNGSKVNIKVSLDKP 524
>gi|222629297|gb|EEE61429.1| hypothetical protein OsJ_15642 [Oryza sativa Japonica Group]
Length = 730
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 145/275 (52%), Gaps = 27/275 (9%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+GGL KDA+E DLR + +GE+ EV L+ + + ++KGFAF+ + + E A+RA+ E
Sbjct: 136 EVFVGGLDKDATESDLRKVFGEVGEITEVRLMMNPVTKKNKGFAFLRYATVEQARRAVSE 195
Query: 165 LCSKD-----------FKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVD 212
L + +GK + S N+ LF+GN+ K+WT++ ++ ++ G D
Sbjct: 196 LKNPSVGLKIWIFYIMVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKEKLKSYGVENFD 255
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNN--ACADYSRQKMTSANFKLDGNTPTVSWAEPKSTP 270
+ L++D P NRG+A + + A + R + F +D + VS+A+ S P
Sbjct: 256 DLLLVEDSNNPGMNRGYALLEFSTRPEAMDAFRRLQKRDVVFGVD-RSAKVSFAD--SYP 312
Query: 271 DHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV----VTPPGKSGKRDFGFIH 326
+ +QV+ +++ LP + ++K+ +++G + KV P K ++DFGF+
Sbjct: 313 EVDDEIMAQVRTVFIDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAK--RKDFGFVT 370
Query: 327 YAERSSALKA---IKDTEKYEIDGQV-LEVALARP 357
+ +A+ I ++E E D + + L+RP
Sbjct: 371 FDTHDNAVACADGITNSEIGEGDSKAKVRARLSRP 405
>gi|91077966|ref|XP_967803.1| PREDICTED: similar to APOBEC1 complementation factor [Tribolium
castaneum]
Length = 363
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 146/272 (53%), Gaps = 31/272 (11%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
GSE+F+G +P+D E++L L + +++ L+ D +G ++GFAFV + + A++A+
Sbjct: 30 GSEIFVGNIPRDLFEDELIPLFSQVAPIYKFRLMMD-FTGNTRGFAFVTYYNVWDAQKAV 88
Query: 163 ---DELC-SKDFKGKTIRCSMSETNNRLFIGNVPKSWT----EKEFRKVIEDVGPGVDTI 214
++ C + + + + +S N RLF GNVPK T E E +K I+ + +
Sbjct: 89 LKFNKYCIASNTRKSQLTVHLSLDNCRLFFGNVPKDKTRDDIENELKKFIDGI------V 142
Query: 215 ELIKDPQ--APSRNRGFAFVLYYNNACADYSRQKMTS-ANFKLDGNTPTVSWAEPKSTPD 271
++I P+ A NRGFAFV + ++A A +R+K+ + + G V WAEP+ D
Sbjct: 143 KVITYPERNAHHFNRGFAFVEFQSHAIAAIARRKLLADGVIRPWGRKLYVDWAEPEPMVD 202
Query: 272 HSAAAASQVKALYVKNLPENTTTKQLKELFQRH-GEVTKVVTPPGKSGKRD-FGFIHYAE 329
+QVK LY+KN+P T +LK + GE+ + KRD + FIH+ E
Sbjct: 203 PD--VMTQVKVLYMKNVPTFWTLDRLKTYISKTVGEIF-----IERIYKRDNYAFIHFDE 255
Query: 330 RSSALKAIKD----TEKYEIDGQVLEVALARP 357
RS A +A+K ++ +G+ +EV ARP
Sbjct: 256 RSFAERALKIFDSVSQYLSFNGKQIEVEWARP 287
>gi|414586039|tpg|DAA36610.1| TPA: hypothetical protein ZEAMMB73_089352 [Zea mays]
gi|414586040|tpg|DAA36611.1| TPA: RNA recognition water-stress protein1, mRNA isoform 2 [Zea
mays]
gi|414586041|tpg|DAA36612.1| TPA: hypothetical protein ZEAMMB73_089352 [Zea mays]
Length = 794
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 131/248 (52%), Gaps = 12/248 (4%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
E+F+GGL KDA+E DL + +GE+ EV L+ + + ++KGFAF+ + + E A+RA+ E
Sbjct: 213 EIFVGGLDKDATENDLMKVFGEVGEITEVRLMMNPVTKKNKGFAFLRYATVEQARRAVSE 272
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAP 223
L + +GK + S N+ LF+GN+ K+WT++ + ++ G D + L +D P
Sbjct: 273 LKNPLVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKDKLKSYGVESFDDLLLAEDTNNP 332
Query: 224 SRNRGFAFVLYYNN--ACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
NRG+A + + A + + F +D + VS+A+ S P +QV+
Sbjct: 333 GMNRGYALLEFSTRPEAMDAFRTLQKRDVVFGVD-RSAKVSFAD--SYPQVDDEIMAQVR 389
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVV----TPPGKSGKRDFGFIHYAERSSALKAI 337
+++ LP + ++K+ +++G + KV P K ++DFGF+ + +A+
Sbjct: 390 TVFLDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAK--RKDFGFVTFDTHDNAVACT 447
Query: 338 KDTEKYEI 345
+ EI
Sbjct: 448 EGMSNSEI 455
>gi|256078322|ref|XP_002575445.1| apobec-1 complementation factor-related [Schistosoma mansoni]
gi|350644243|emb|CCD61005.1| apobec-1 complementation factor-related [Schistosoma mansoni]
Length = 771
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 145/307 (47%), Gaps = 46/307 (14%)
Query: 65 NGSHINTEDAVEDEDKRT--ASISEDEKEKH----DQLLALPPHGSEVFIGGLPKDASEE 118
N + ++ E+A+ +RT + E+ + ++ + PP G EVFIG +P+D E+
Sbjct: 59 NAASLSAEEAIVSLLERTKYTYVQENGQRRYGPPPNWQCEAPPRGCEVFIGKIPRDCFED 118
Query: 119 DLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178
+L + E IG ++ L+ + + G ++GF F + ++E KRA+ EL F+ +
Sbjct: 119 ELIPVFEQIGPIYMFRLMMELN-GINRGFGFCVYTNREDTKRAVQELNIMKFEKE----- 172
Query: 179 MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNA 238
+E+E ++ V GV + ++NRGFAF+ Y ++
Sbjct: 173 ---------------RQSEEEILSEMKRVTDGVKDVISYPSVTDKTKNRGFAFIEYGSHK 217
Query: 239 CADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
A +R+K+ + L G+ V WAEP+ + S+VK LYV+NL +TT + L+
Sbjct: 218 AAAMARRKLLPGHIHLWGHQIAVDWAEPEREVNED--IMSKVKILYVRNLMLSTTEESLR 275
Query: 299 ELFQRHG--------EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVL 350
+ F + V K+ D+ FIH+ ER AL+ + IDG +
Sbjct: 276 DSFIKAAGGDPNSVERVKKI---------SDYAFIHFREREQALQCLHTLNDTYIDGSKI 326
Query: 351 EVALARP 357
EV A+P
Sbjct: 327 EVTWAKP 333
>gi|297611571|ref|NP_001067623.2| Os11g0250000 [Oryza sativa Japonica Group]
gi|255679961|dbj|BAF27986.2| Os11g0250000 [Oryza sativa Japonica Group]
Length = 94
Score = 112 bits (281), Expect = 3e-22, Method: Composition-based stats.
Identities = 49/75 (65%), Positives = 63/75 (84%), Gaps = 1/75 (1%)
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERSSALKAI 337
QVK +YVKNLPEN + +++KE+F++HGEVTKVV PP K G KRDFGF+H+AERSSALKA+
Sbjct: 6 QVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSSALKAV 65
Query: 338 KDTEKYEIDGQVLEV 352
K +EKYE +G V +
Sbjct: 66 KGSEKYEFNGNVFSL 80
Score = 42.0 bits (97), Expect = 0.65, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 97 LALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
+ P +++ LP++AS+E ++++ E GEV +V L KD G + F FV F +
Sbjct: 1 MTFPLQVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKD-GHKRDFGFVHFAERS 59
Query: 157 VAKRAIDELCSKDFKG 172
A +A+ +F G
Sbjct: 60 SALKAVKGSEKYEFNG 75
>gi|356531832|ref|XP_003534480.1| PREDICTED: uncharacterized protein LOC100811387 [Glycine max]
Length = 778
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 136/238 (57%), Gaps = 10/238 (4%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+GGL KDA+E DL+ + +G V EV L+ + + +KGFAF+ F + E A+RA+ E
Sbjct: 193 EVFVGGLDKDATEHDLKKVFGKVGVVTEVRLMINPQTKRNKGFAFLRFETVEQARRAVVE 252
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAP 223
L + GK + S+ ++ L++GN+ K+W ++ ++ ++ G V+ + LI+D
Sbjct: 253 LKNPVINGKRCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVEDVEDLTLIEDDTNE 312
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKA 282
NRGFAF+ + + + A + +++ + + P VS+A+ S D +QVK
Sbjct: 313 GMNRGFAFLEFSSRSDAKEAYKRLQKRDVAFGVDKPAKVSFAD--SFIDLGDEIMAQVKT 370
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKVV----TPPGKSGKRDFGFIHYAERSSALKA 336
+++ +LP + +++L +++GE+ KV P + ++++GF+ ++ +A++
Sbjct: 371 VFIDSLPPSWNEDYVRDLLKKYGEIEKVELAKDMPAAR--RKNYGFVTFSTHVAAVEC 426
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI LP +E+ +RDL + GE+ +V L KD + K + FV F + A D +
Sbjct: 371 VFIDSLPPSWNEDYVRDLLKKYGEIEKVELAKDMPAARRKNYGFVTFSTHVAAVECADSI 430
Query: 166 CSKDF----KGKTIRCSMS 180
S K +R +S
Sbjct: 431 TSAGLGEGDKKAKVRARLS 449
>gi|356568565|ref|XP_003552481.1| PREDICTED: uncharacterized protein LOC100808583 [Glycine max]
Length = 785
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 137/238 (57%), Gaps = 10/238 (4%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+GGL KDA+E DL+ + +G V EV L+ + + +KGFAF+ F + E A+RA+ E
Sbjct: 199 EVFVGGLDKDATEHDLKKVFGKVGVVTEVRLMINPQTKRNKGFAFLRFETVEQARRAVVE 258
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQAP 223
L + GK + S+ ++ L++GN+ K+W ++ ++ ++ G V+ + LI+D
Sbjct: 259 LKNPVINGKQCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVENVEDLTLIEDGTNE 318
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKA 282
NRGFAF+ + + + A + +++ + + P VS+A+ S D +QVK
Sbjct: 319 GMNRGFAFLEFSSRSDAKEAYRRLQKRDVAFGVDKPAKVSFAD--SFIDLGDEIMAQVKT 376
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKVV----TPPGKSGKRDFGFIHYAERSSALKA 336
++V +LP + +++L +++GE+ K+ P + ++++GF+ ++ ++A++
Sbjct: 377 VFVDSLPPSWDEVYVRDLLKKYGEIEKIELAKDMPAAR--RKNYGFVTFSTHAAAVEC 432
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VF+ LP E +RDL + GE+ ++ L KD + K + FV F + A D +
Sbjct: 377 VFVDSLPPSWDEVYVRDLLKKYGEIEKIELAKDMPAARRKNYGFVTFSTHAAAVECADSI 436
Query: 166 CS 167
S
Sbjct: 437 TS 438
>gi|116781130|gb|ABK21976.1| unknown [Picea sitchensis]
Length = 219
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 101/177 (57%), Gaps = 8/177 (4%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+GGL KDA+EEDLR + +GEV E+ L+ + + ++KGFAF+ + + E AKRA E
Sbjct: 36 EVFVGGLDKDAAEEDLRKVFSEVGEVVEIRLMMNAQTQKNKGFAFIRYATVEQAKRACTE 95
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE---LIKDPQ 221
L + GK S S+ N+ LF+GN+ K+WT++ R+ ++ +D IE L++DP+
Sbjct: 96 LKNPQVNGKVCGISPSQDNDTLFLGNICKTWTKEALREKLKSF--SIDNIEDLTLVEDPE 153
Query: 222 APSRNRGFAFVLY--YNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
NRG AF+ + ++A Y R + D T VS+AE PD A
Sbjct: 154 NEGMNRGIAFIEFSARSDAMNAYKRLQKRDVVLGTD-RTAKVSFAETFVDPDEEVMA 209
>gi|296082223|emb|CBI21228.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 122/237 (51%), Gaps = 21/237 (8%)
Query: 141 SGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEF 200
+G+SKG+ FV F +KE A +AI E +GK I S LF GN+PK W+ EF
Sbjct: 6 NGKSKGYCFVRFTTKEAANKAIKEKSGFMVEGKKIGVVPSTDQTTLFFGNLPKDWSPDEF 65
Query: 201 RKVIEDVGPGVDTIELI-------KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK 253
K++ V +++L +NRGFAFV + ++A A + + + ++F
Sbjct: 66 DKMVCQAFQDVTSVDLAMPFGSGDTSLGQKQQNRGFAFVKFSSHAAAARAHRMGSKSDFL 125
Query: 254 L-DGNTPTVSWA-EPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVV 311
L D P V WA EP+ P+ A ++ +V NLP++ LK+LF G+V KV+
Sbjct: 126 LGDSWHPVVEWAEEPEIDPEELA----KITIAFVGNLPKDANEDYLKKLFGPFGKVEKVL 181
Query: 312 TPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQV------LEVALARPQTNKR 362
K G+ GF+H+A+RS AIK+ + + G L+VA+A+P KR
Sbjct: 182 L--SKKGQSPVGFVHFAKRSDLDNAIKEMNEKTVQGPSRGPAFKLQVAVAKPLDRKR 236
Score = 38.5 bits (88), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
F+G LPKDA+E+ L+ L P G+V +V L K G+S FV F + AI E+
Sbjct: 154 FVGNLPKDANEDYLKKLFGPFGKVEKVLLSK---KGQSP-VGFVHFAKRSDLDNAIKEMN 209
Query: 167 SKDFKG 172
K +G
Sbjct: 210 EKTVQG 215
>gi|170057401|ref|XP_001864467.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167876865|gb|EDS40248.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 741
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 131/259 (50%), Gaps = 7/259 (2%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P +G EV+ +P + +E +L + E G ++E+ L+ D ++ +++ + FV + ++E A+
Sbjct: 109 PGYGCEVYAKRIPANFTEVNLVPIFERCGRLYEIRLMMDYNN-QNRRYCFVRYTNEEDAR 167
Query: 160 RAIDELCSKDFKG-KTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI+ L +G +TI S RLF+ N+PK K + P + + +
Sbjct: 168 LAIELLNHHFVRGNQTIEVQKSFEKCRLFVANLPKELDRKTIEVSFRSLFPEMTRLVMHN 227
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
+ NRGFAF+ + ++ A ++++ T ++ + WA P+ DHS A
Sbjct: 228 RIADGTTNRGFAFMDFPDHGSALRAKKQTTPGCLRMWDRDIKIVWANPQRALDHS--NAD 285
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+N+ +TK+L LF R + +V S R+F F+ + R A A+
Sbjct: 286 EVKTLFVRNVDLQVSTKELYMLFSRVVDRQDIVK---ISRVREFAFVEFTRRFHAAFAMH 342
Query: 339 DTEKYEIDGQVLEVALARP 357
+ ++++G L++ A P
Sbjct: 343 AVQGFQLNGYTLDIEWAMP 361
>gi|296089276|emb|CBI39048.3| unnamed protein product [Vitis vinifera]
Length = 400
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 124/224 (55%), Gaps = 9/224 (4%)
Query: 141 SGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEF 200
+G++KG+AF+ F AKRA+ + + GK + E N+ +F+GN+ K+W ++
Sbjct: 5 TGKNKGYAFLRFALASDAKRALAKYPKIEICGKQCGTAPVEGNDTIFLGNIDKNWKNEDV 64
Query: 201 RKVIEDVGP-GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTP 259
K+++++G +D + ++ DP RNRGFAF+ N A + +K+ +
Sbjct: 65 VKLLQEIGIDKIDKVTVMVDPSNIERNRGFAFLELETNKDAQLAYKKLQKKDVFGKHQNI 124
Query: 260 TVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPG--KS 317
V+WAEP + PD +VK +Y + +P + +++++ F++ GE+ VV S
Sbjct: 125 KVAWAEPLNEPDEDEML--KVKTVYAEYIPSSWEEEKVRDCFKKFGEIESVVLARNLRSS 182
Query: 318 GKRDFGFIHYAERSSALKAIKDTEK---YEIDGQV-LEVALARP 357
++DF F+ Y R +AL+ I+ + ++ + +V ++V+LA+P
Sbjct: 183 KRKDFAFVKYTTREAALECIESFSREPLHDAECKVKVKVSLAKP 226
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 90/182 (49%), Gaps = 26/182 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIG--EVFEVGLVKDKDSGE-SKGFAFVAFRSKEVAKRAI 162
+F+G + K+ ED+ L + IG ++ +V ++ D + E ++GFAF+ + + A+ A
Sbjct: 50 IFLGNIDKNWKNEDVVKLLQEIGIDKIDKVTVMVDPSNIERNRGFAFLELETNKDAQLAY 109
Query: 163 DELCSKDFKGK--TIRCSMSETNNR-----------LFIGNVPKSWTEKEFRKVIEDVGP 209
+L KD GK I+ + +E N ++ +P SW E++ R + G
Sbjct: 110 KKLQKKDVFGKHQNIKVAWAEPLNEPDEDEMLKVKTVYAEYIPSSWEEEKVRDCFKKFGE 169
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACA-----DYSRQKMTSANFKLDGNTPTVSWA 264
++++ L ++ ++ S+ + FAFV Y A +SR+ + A K+ VS A
Sbjct: 170 -IESVVLARNLRS-SKRKDFAFVKYTTREAALECIESFSREPLHDAECKVKVK---VSLA 224
Query: 265 EP 266
+P
Sbjct: 225 KP 226
>gi|149024313|gb|EDL80810.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_a [Rattus
norvegicus]
Length = 447
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 108/193 (55%), Gaps = 8/193 (4%)
Query: 172 GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAF 231
GK + +S NNRLF+G++PK+ T++ + V G+ + L P +NRGF F
Sbjct: 175 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCF 234
Query: 232 VLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPEN 291
+ Y ++ A +R+++ S K+ GN TV WA+P PD A +VK L+V+NL
Sbjct: 235 LEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA--KVKVLFVRNLATT 292
Query: 292 TTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLE 351
T + L++ F G++ +V +D+ F+H+ +R +A+KA+ + EI+G+ +E
Sbjct: 293 VTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIE 346
Query: 352 VALARPQTNKRTE 364
+ LA+P KR E
Sbjct: 347 IVLAKPPDKKRKE 359
>gi|222636973|gb|EEE67105.1| hypothetical protein OsJ_24114 [Oryza sativa Japonica Group]
Length = 624
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 139/263 (52%), Gaps = 12/263 (4%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKD-KDSGESKGFAFVAFRSKEVAKRAID 163
EV +GGLP+DA+EED+ G+V EV LV+D D +KGFAFV F + A+ A D
Sbjct: 91 EVLVGGLPRDAAEEDVARALADAGDVEEVRLVRDPADPRSNKGFAFVRFAAAWQARWAAD 150
Query: 164 ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQA 222
++ + KG+ ++ N L + N+ WT+ + + ++ ++ I L++DP+
Sbjct: 151 DVRTAMVKGEACMICKNDANETLHLRNICFDWTKDDLAEELKTYKLENLEDINLVEDPER 210
Query: 223 PSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT-PTVSWAEPKSTPDHSAAAASQVK 281
+NRG+AF+ + N + K+ + + L + VS+++ S D +VK
Sbjct: 211 KGKNRGYAFLDFRTNVDGVDAFFKLQNRDIYLGTDVRAQVSFSKTLSLDD---KIMEKVK 267
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPG--KSGKRDFGFIHYAERSSALKAIKD 339
++++ LP + +++E+F + GE+ + K+ ++DFGFI + R SAL I
Sbjct: 268 SVFLDGLPPHWDEDKVREVFGKFGEIDSIHLARNMFKAKRKDFGFIGFTSRQSALDCIST 327
Query: 340 TEK---YEIDGQV-LEVALARPQ 358
K E G+V ++ +L RP+
Sbjct: 328 VSKGGIVEGSGKVRIKASLQRPR 350
>gi|397478947|ref|XP_003810795.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4 [Pan
paniscus]
Length = 557
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 108/193 (55%), Gaps = 8/193 (4%)
Query: 172 GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAF 231
GK + +S NNRLF+G++PK+ T++ + V G+ + L P +NRGF F
Sbjct: 158 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCF 217
Query: 232 VLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPEN 291
+ Y ++ A +R+++ S K+ GN TV WA+P PD A +VK L+V+NL
Sbjct: 218 LEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA--KVKVLFVRNLATT 275
Query: 292 TTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLE 351
T + L++ F G++ +V +D+ F+H+ +R +A+KA+ + EI+G+ +E
Sbjct: 276 VTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIE 329
Query: 352 VALARPQTNKRTE 364
+ LA+P KR E
Sbjct: 330 IVLAKPPDKKRKE 342
>gi|359488537|ref|XP_003633774.1| PREDICTED: uncharacterized protein LOC100853981 [Vitis vinifera]
Length = 787
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 115/216 (53%), Gaps = 16/216 (7%)
Query: 128 GEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLF 187
GE+ EV ++ D++ G+SKG+ FV F +KE A +AI E +GK I S LF
Sbjct: 201 GEIIEVRMMTDQN-GKSKGYCFVRFTTKEAANKAIKEKSGFMVEGKKIGVVPSTDQTTLF 259
Query: 188 IGNVPKSWTEKEFRKVIEDVGPGVDTIELI-------KDPQAPSRNRGFAFVLYYNNACA 240
GN+PK W+ EF K++ V +++L +NRGFAFV + ++A A
Sbjct: 260 FGNLPKDWSPDEFDKMVCQAFQDVTSVDLAMPFGSGDTSLGQKQQNRGFAFVKFSSHAAA 319
Query: 241 DYSRQKMTSANFKL-DGNTPTVSWA-EPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + + ++F L D P V WA EP+ P+ A ++ +V NLP++ LK
Sbjct: 320 ARAHRMGSKSDFLLGDSWHPVVEWAEEPEIDPEELA----KITIAFVGNLPKDANEDYLK 375
Query: 299 ELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
+LF G+V KV+ K G+ GF+H+A+RS L
Sbjct: 376 KLFGPFGKVEKVLL--SKKGQSPVGFVHFAKRSCLL 409
>gi|348580335|ref|XP_003475934.1| PREDICTED: probable RNA-binding protein 46-like [Cavia porcellus]
Length = 436
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 130/261 (49%), Gaps = 52/261 (19%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + E G++ E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDEL--VFERAGKIHEFRLMME-FSGENRGYAFVTYTTKEEAQLAIR 117
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK ++E I+ V GV +++I P A
Sbjct: 118 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEIKKVTEGV--VDVIVYPSA 175
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV Y + AAA +V
Sbjct: 176 TDKTKNRGFAFVKY------------------------------------ESHRAAAMRV 199
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K L+V+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 200 KVLFVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMS 253
Query: 339 DTEKYEIDGQVLEVALARPQT 359
IDG +EV LA+P +
Sbjct: 254 VISGKCIDGASIEVTLAKPHS 274
>gi|194386954|dbj|BAG59843.1| unnamed protein product [Homo sapiens]
Length = 473
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 108/193 (55%), Gaps = 8/193 (4%)
Query: 172 GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAF 231
GK + +S NNRLF+G++PK+ T++ + V G+ + L P +NRGF F
Sbjct: 74 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVAEGLVDVILYHQPDDKKKNRGFCF 133
Query: 232 VLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPEN 291
+ Y ++ A +R+++ S K+ GN TV WA+P PD A +VK L+V+NL
Sbjct: 134 LEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA--KVKVLFVRNLATT 191
Query: 292 TTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLE 351
T + L++ F G++ +V +D+ F+H+ +R +A+KA+ + EI+G+ +E
Sbjct: 192 VTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIE 245
Query: 352 VALARPQTNKRTE 364
+ LA+P KR E
Sbjct: 246 IVLAKPPDKKRKE 258
>gi|34395354|dbj|BAC84424.1| water-stress protein-like protein [Oryza sativa Japonica Group]
Length = 465
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 139/264 (52%), Gaps = 12/264 (4%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKD-KDSGESKGFAFVAFRSKEVAKRAI 162
EV +GGLP+DA+EED+ G+V EV LV+D D +KGFAFV F + A+ A
Sbjct: 90 CEVLVGGLPRDAAEEDVARALADAGDVEEVRLVRDPADPRSNKGFAFVRFAAAWQARWAA 149
Query: 163 DELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQ 221
D++ + KG+ ++ N L + N+ WT+ + + ++ ++ I L++DP+
Sbjct: 150 DDVRTAMVKGEACMICKNDANETLHLRNICFDWTKDDLAEELKTYKLENLEDINLVEDPE 209
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT-PTVSWAEPKSTPDHSAAAASQV 280
+NRG+AF+ + N + K+ + + L + VS+++ S D +V
Sbjct: 210 RKGKNRGYAFLDFRTNVDGVDAFFKLQNRDIYLGTDVRAQVSFSKTLSLDD---KIMEKV 266
Query: 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPG--KSGKRDFGFIHYAERSSALKAIK 338
K++++ LP + +++E+F + GE+ + K+ ++DFGFI + R SAL I
Sbjct: 267 KSVFLDGLPPHWDEDKVREVFGKFGEIDSIHLARNMFKAKRKDFGFIGFTSRQSALDCIS 326
Query: 339 DTEK---YEIDGQV-LEVALARPQ 358
K E G+V ++ +L RP+
Sbjct: 327 TVSKGGIVEGSGKVRIKASLQRPR 350
>gi|148697994|gb|EDL29941.1| heterogeneous nuclear ribonucleoprotein R [Mus musculus]
Length = 607
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 108/193 (55%), Gaps = 8/193 (4%)
Query: 172 GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAF 231
GK + +S NNRLF+G++PK+ T++ + V G+ + L P +NRGF F
Sbjct: 209 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCF 268
Query: 232 VLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPEN 291
+ Y ++ A +R+++ S K+ GN TV WA+P PD A +VK L+V+NL
Sbjct: 269 LEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA--KVKVLFVRNLATT 326
Query: 292 TTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLE 351
T + L++ F G++ +V +D+ F+H+ +R +A+KA+ + EI+G+ +E
Sbjct: 327 VTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIE 380
Query: 352 VALARPQTNKRTE 364
+ LA+P KR E
Sbjct: 381 IVLAKPPDKKRKE 393
>gi|296207004|ref|XP_002750459.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Callithrix jacchus]
Length = 473
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 108/193 (55%), Gaps = 8/193 (4%)
Query: 172 GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAF 231
GK + +S NNRLF+G++PK+ T++ + V G+ + L P +NRGF F
Sbjct: 74 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCF 133
Query: 232 VLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPEN 291
+ Y ++ A +R+++ S K+ GN TV WA+P PD A +VK L+V+NL
Sbjct: 134 LEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA--KVKVLFVRNLATT 191
Query: 292 TTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLE 351
T + L++ F G++ +V +D+ F+H+ +R +A+KA+ + EI+G+ +E
Sbjct: 192 VTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIE 245
Query: 352 VALARPQTNKRTE 364
+ LA+P KR E
Sbjct: 246 IVLAKPPDKKRKE 258
>gi|73950230|ref|XP_866516.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Canis lupus familiaris]
gi|297282473|ref|XP_002802272.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 4
[Macaca mulatta]
gi|332244976|ref|XP_003271639.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Nomascus leucogenys]
gi|332807935|ref|XP_003307913.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3 [Pan
troglodytes]
gi|402853340|ref|XP_003891354.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Papio anubis]
Length = 473
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 108/193 (55%), Gaps = 8/193 (4%)
Query: 172 GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAF 231
GK + +S NNRLF+G++PK+ T++ + V G+ + L P +NRGF F
Sbjct: 74 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCF 133
Query: 232 VLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPEN 291
+ Y ++ A +R+++ S K+ GN TV WA+P PD A +VK L+V+NL
Sbjct: 134 LEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA--KVKVLFVRNLATT 191
Query: 292 TTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLE 351
T + L++ F G++ +V +D+ F+H+ +R +A+KA+ + EI+G+ +E
Sbjct: 192 VTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIE 245
Query: 352 VALARPQTNKRTE 364
+ LA+P KR E
Sbjct: 246 IVLAKPPDKKRKE 258
>gi|338722117|ref|XP_003364487.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Equus caballus]
Length = 473
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 108/193 (55%), Gaps = 8/193 (4%)
Query: 172 GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAF 231
GK + +S NNRLF+G++PK+ T++ + V G+ + L P +NRGF F
Sbjct: 74 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCF 133
Query: 232 VLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPEN 291
+ Y ++ A +R+++ S K+ GN TV WA+P PD A +VK L+V+NL
Sbjct: 134 LEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA--KVKVLFVRNLATT 191
Query: 292 TTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLE 351
T + L++ F G++ +V +D+ F+H+ +R +A+KA+ + EI+G+ +E
Sbjct: 192 VTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIE 245
Query: 352 VALARPQTNKRTE 364
+ LA+P KR E
Sbjct: 246 IVLAKPPDKKRKE 258
>gi|351698414|gb|EHB01333.1| Heterogeneous nuclear ribonucleoprotein R [Heterocephalus glaber]
Length = 402
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 117/215 (54%), Gaps = 17/215 (7%)
Query: 155 KEVAKRAID-----ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
KE A+ A+ E+C GK + +S NNRLF+G++PK+ T++ + V
Sbjct: 20 KEAAQEAVKLCDSYEICP----GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTE 75
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST 269
G+ + L P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P
Sbjct: 76 GLVDVILYHQPDDKKKNRGFRFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 135
Query: 270 PDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAE 329
PD A +VK L+V+NL T + L++ F G++ +V +D+ F+H+ +
Sbjct: 136 PDPEVMA--KVKVLFVRNLVTRVTEEILEKSFSEFGKLERV------KKLKDYAFVHFED 187
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
R +A+KA+ + EI+G+ +E+ LA+P KR E
Sbjct: 188 RGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKE 222
>gi|417410478|gb|JAA51712.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 409
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 108/193 (55%), Gaps = 8/193 (4%)
Query: 172 GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAF 231
GK + +S NNRLF+G++PK+ T++ + V G+ + L P +NRGF F
Sbjct: 10 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCF 69
Query: 232 VLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPEN 291
+ Y ++ A +R+++ S K+ GN TV WA+P PD A +VK L+V+NL
Sbjct: 70 LEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA--KVKVLFVRNLATT 127
Query: 292 TTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLE 351
T + L++ F G++ +V +D+ F+H+ +R +A+KA+ + EI+G+ +E
Sbjct: 128 VTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIE 181
Query: 352 VALARPQTNKRTE 364
+ LA+P KR E
Sbjct: 182 IVLAKPPDKKRKE 194
>gi|424513446|emb|CCO66068.1| RNA recognition motif family protein, expressed [Bathycoccus
prasinos]
Length = 557
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 111/430 (25%), Positives = 180/430 (41%), Gaps = 101/430 (23%)
Query: 97 LALPPHGSEVFIGGLPKDASEEDLRDL----------------CEPIGEVFEVGLVKD-K 139
L P HGSE+F+GG+PK AS++D+ +L +P+ ++ +VKD
Sbjct: 86 LGHPQHGSELFLGGVPKSASDQDVENLFKGSTKGRGKGNTKCPSQPV----DIQVVKDPN 141
Query: 140 DSGESKGFAFVAFRSKEVAKRAIDELCSKDFKG------------KTIRCSMSETNNRLF 187
DS ++G+AF F ++ + A L D K IR ++ T + LF
Sbjct: 142 DSMRNRGYAFARFGNRGECEDAFQFLSENDGANAVMIDAENNNEEKKIRATIKPTKHVLF 201
Query: 188 IGNVPKSWTEKEFRKVIEDV-GPGVDTIELIKDPQA--------PSRNRGFAFVLYYNNA 238
+ P T ++ + V G G++T+ L P+A R++G+ F+ Y+N
Sbjct: 202 MSGFPPFATREDIVTELLRVGGAGIETVSL---PRASGTGTNGIACRHKGYGFIDYFNQE 258
Query: 239 CADYSRQKM---TSANFKLDGNTPTVS-WAE-PKSTPDHSAAAASQVKALYVKNLP---- 289
CA+ + + + T+ F + N P V+ WA+ K P +Q K++YV +P
Sbjct: 259 CAERAMKNINDKTTRMFNGNANKPVVAKWADVSKEKPPSKEDLLAQSKSVYVGQIPTEGV 318
Query: 290 ---ENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERS--------------- 331
E +L+E+F + GEV V P G + K + F+H+ ERS
Sbjct: 319 ALDEKDLEGKLREVFGQFGEVESVKLPRGDATK-GYAFVHFTERSSAEKAVEAAAASASG 377
Query: 332 -----SALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGY--- 383
SA+ + ++ G L V +ARP+ + E G
Sbjct: 378 ARGDESAMDGVVAAGAVQLQGCNLTVEIARPERERNNEHRDKGGPRGGRGGRRPMHRGGR 437
Query: 384 ----GSFAGTAYGSVST--GLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVL 437
GS G Y + + G G+A P +G G M P+ LP+G+ YV+
Sbjct: 438 GEPPGSRRGGDYNNYMSPHGGGIA-------PRQFG-----GGNSMTPVYLPNGQTAYVM 485
Query: 438 QQPGVQMPLP 447
Q MP P
Sbjct: 486 GQG--NMPAP 493
>gi|313233215|emb|CBY24330.1| unnamed protein product [Oikopleura dioica]
Length = 254
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 101/174 (58%), Gaps = 6/174 (3%)
Query: 96 LLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSK 155
L P G+E+FIG LP+D E++L + E G VFE+ ++ D + G ++GF FV ++++
Sbjct: 68 LTGKPEKGTEIFIGKLPRDLFEDELYPVLESYGPVFELRMMLDFN-GNNRGFCFVTYQTR 126
Query: 156 EVAKRAIDELCSKDF-KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTI 214
++ A+ + + + KG+ + S N RLF+G +PKS E + ++ V GV +
Sbjct: 127 NESQAALKGINNFEIRKGRLLGACQSVDNCRLFVGGIPKSKKRDEIMEEMKKVTEGV--V 184
Query: 215 ELIKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEP 266
++I P A S+NRGF+FV Y ++ A +R+K+ +L G+ V WAEP
Sbjct: 185 DVIVYPSAADKSKNRGFSFVEYKDHKAAAMARRKLMPGRIQLWGHQIAVDWAEP 238
>gi|307210260|gb|EFN86910.1| APOBEC1 complementation factor [Harpegnathos saltator]
Length = 419
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 129/275 (46%), Gaps = 11/275 (4%)
Query: 123 LCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFK-GKTIRCSMSE 181
L E +G + E+ L+ D SG ++G+AF + +A+RA L + + G I S
Sbjct: 3 LLEKVGRLLELRLMLD-FSGSTRGYAFALYEEPRIARRACSVLDGHEIRPGHRIGVVKSM 61
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N RLF G VPKS T++EF + + G+ + L + NRGF FV + ++ A
Sbjct: 62 DNCRLFFGGVPKSKTKEEFLSELTKILDGIIDVYLYPSAHDRTLNRGFIFVEFKDHRAAA 121
Query: 242 YSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELF 301
+R+K+ L + V WA+P+ V AL+V+NL + ++++E+F
Sbjct: 122 MARRKLIPGKVMLWDHEIAVDWADPEPGDPVDEDIMETVTALFVRNLTLEMSQQKVREVF 181
Query: 302 QRHGEVTKVVTPPGKSGKRD-FGFIHYAERSSALKAIKDTEKYE--IDGQVLEVALARPQ 358
RH V P K K + F FIHY R +A + +K ++ + E+ A+P
Sbjct: 182 HRHTNV-----PILKLKKINHFAFIHYENRGAAQAVMDIMQKSNSVVEKEGWEIRWAKPI 236
Query: 359 -TNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYG 392
+K E V SG+ A G + A+G
Sbjct: 237 GASKFIERQRYIREAVANSGVRTASKGGYPKQAHG 271
>gi|324506631|gb|ADY42829.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 341
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 10/175 (5%)
Query: 190 NVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPS--RNRGFAFVLYYNNACADYSRQKM 247
N+PKS +++E ++ GV + P A + +NRGF F+ + ++ A +++K+
Sbjct: 7 NIPKSKSKEEILAEFKEHTEGVVDCIIYTSPDAGANRKNRGFCFLDFCDHKAASDAKRKI 66
Query: 248 TSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEV 307
+ + + V WAE + PD S+VK LYV+NL E T +QLKE+F HGEV
Sbjct: 67 HAGKLRPWNSDLVVDWAEQQEEPDEETM--SKVKVLYVRNLKEAVTEEQLKEMFAAHGEV 124
Query: 308 TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR 362
+ RD+ FIH+ ER ALKA++ ++G +E++LA+PQ +K+
Sbjct: 125 ERAKK------IRDYAFIHFKEREPALKAMEALNGTVLEGIAIEISLAKPQGDKK 173
>gi|157123628|ref|XP_001660235.1| hypothetical protein AaeL_AAEL009575 [Aedes aegypti]
gi|108874325|gb|EAT38550.1| AAEL009575-PA [Aedes aegypti]
Length = 358
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 127/262 (48%), Gaps = 13/262 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G E+++ +P + +E DL + E G+++E+ L+ D S +++ + FV + ++E AK
Sbjct: 103 PGFGCEIYVKRIPPEFTEADLVPVFERFGKLYEMRLMMDY-SNQNRRYCFVRYTNEEDAK 161
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI+ L + +T+ S RLF+GN+PK K + P + +
Sbjct: 162 VAIEVLNHHFVRDNQTLEAQRSFEKCRLFVGNLPKDLDRKTIEIAFRSLFPEMTRFVMHN 221
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
NRGFAF+ + ++A A ++++ T ++ + WA P+ + DHS
Sbjct: 222 RISDGEMNRGFAFMDFPDHAAALRAKKQTTPGCMRMWDREIKIVWANPQRSLDHS--GVD 279
Query: 279 QVKALYVKNLPENTTTKQLKELFQR---HGEVTKVVTPPGKSGKRDFGFIHYAERSSALK 335
+VK L+V+N+ T +L LF R ++ K+ + R+F F+ +A+R A
Sbjct: 280 EVKMLFVRNIDLKVGTSELYNLFVRLVPRQDIIKI------TRVREFAFVEFAKREQAEM 333
Query: 336 AIKDTEKYEIDGQVLEVALARP 357
+ + Y + L++ A P
Sbjct: 334 VMHAVQGYVLTQYPLDIEWAMP 355
>gi|170034902|ref|XP_001845311.1| heterogeneous nuclear ribonucleoprotein r [Culex quinquefasciatus]
gi|167876604|gb|EDS39987.1| heterogeneous nuclear ribonucleoprotein r [Culex quinquefasciatus]
Length = 542
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 99/177 (55%), Gaps = 17/177 (9%)
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
+F G +PK E E + E G D + L+ DP + NRG+AFV + SR
Sbjct: 181 VFCGKIPKDMYEDELIPLFEKCGKIWD-LRLMMDPMTGT-NRGYAFVTFT-------SRD 231
Query: 246 KMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHG 305
+A ++ G V WA+P+ PD S+VK LYV+NL ++T+ ++LKE F+ G
Sbjct: 232 AACNAVREVWGCDIIVDWADPQEEPDEQTM--SKVKVLYVRNLTQDTSEEKLKESFEAFG 289
Query: 306 EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR 362
+V +V +D+ F+H+ +R A+ A+KD + +I+G +EV+LA+P ++K+
Sbjct: 290 KVERV------KKIKDYAFVHFEDRDHAVNAMKDLDGKDINGSAIEVSLAKPPSDKK 340
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 94/177 (53%), Gaps = 22/177 (12%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P +G EVF G +PKD E++L L E G+++++ L+ D +G ++G+AFV F S++ A
Sbjct: 175 PGNGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAAC 234
Query: 160 RAIDELCSKDF-------KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+ E+ D + + +MS+ L++ N+ + +E++ ++ E G V+
Sbjct: 235 NAVREVWGCDIIVDWADPQEEPDEQTMSKV-KVLYVRNLTQDTSEEKLKESFEAFGK-VE 292
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPKS 268
++ IKD +AFV + + D++ M + K ++G+ VS A+P S
Sbjct: 293 RVKKIKD---------YAFVHFEDR---DHAVNAMKDLDGKDINGSAIEVSLAKPPS 337
>gi|157108822|ref|XP_001650402.1| hypothetical protein AaeL_AAEL015050 [Aedes aegypti]
gi|108868501|gb|EAT32726.1| AAEL015050-PA [Aedes aegypti]
Length = 396
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 127/262 (48%), Gaps = 13/262 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G E+++ +P + +E DL + E G+++E+ L+ D S +++ + FV + ++E AK
Sbjct: 103 PGFGCEIYVKRIPPEFTEADLVPVFERFGKLYEMRLMMDY-SNQNRRYCFVRYTNEEDAK 161
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI+ L + +T+ S RLF+GN+PK K + P + +
Sbjct: 162 VAIEVLNHHFVRDNQTLEAQRSFEKCRLFVGNLPKDLDRKTIEIAFRSLFPEMTRFVMHN 221
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
NRGFAF+ + ++A A ++++ T ++ + WA P+ + DHS
Sbjct: 222 RISDGEMNRGFAFMDFPDHAAALRAKKQTTPGCMRMWDREIKIVWANPQRSLDHS--GVD 279
Query: 279 QVKALYVKNLPENTTTKQLKELFQR---HGEVTKVVTPPGKSGKRDFGFIHYAERSSALK 335
+VK L+V+N+ T +L LF R ++ K+ + R+F F+ +A+R A
Sbjct: 280 EVKMLFVRNIDLKVGTSELYNLFVRLVPRQDIIKI------TRVREFAFVEFAKREQAEM 333
Query: 336 AIKDTEKYEIDGQVLEVALARP 357
+ + Y + L++ A P
Sbjct: 334 VMHAVQGYVLTQYPLDIEWAMP 355
>gi|414589121|tpg|DAA39692.1| TPA: hypothetical protein ZEAMMB73_249765 [Zea mays]
Length = 618
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 138/267 (51%), Gaps = 20/267 (7%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKD-KDSGESKGFAFVAFRSKEVAKRAID 163
EVF+ GLP+DA+EED+ G++ EV LV+D D +KGFAFV F + A+ A +
Sbjct: 111 EVFVSGLPQDAAEEDVAQALADAGDIEEVRLVRDPADQRLNKGFAFVRFAAAWQARWAAN 170
Query: 164 ELCSKDFKGKTI-RCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP----GVDTIELIK 218
+L KGK C SET L + N+ W++ + + E + P +D I LI+
Sbjct: 171 DLREATIKGKACGICKNSETET-LHLRNICFDWSKDD---LAEKLKPFKLENLDRINLIE 226
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT-PTVSWAEPKSTPDHSAAAA 277
P +NRG+AF+ + + A + K+ + L ++ +S++ S D
Sbjct: 227 HPDRKGKNRGYAFLDFRTHVDAVEAFVKLQKIDLYLGTDSRANISFSNTLSQDD---EIM 283
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPG--KSGKRDFGFIHYAERSSALK 335
+VK++++ +P + +++E+F + GE+ + + ++DFGFI + R SAL
Sbjct: 284 EKVKSVFLDGVPPHWDEDKVREIFGKFGEIDSIQLARNMFTAARKDFGFIGFTARQSALD 343
Query: 336 AIKDTEKY---EIDGQV-LEVALARPQ 358
IK K E G+V ++ +L RP+
Sbjct: 344 CIKMVNKDGVGEGSGKVPIKASLQRPR 370
>gi|426231613|ref|XP_004009833.1| PREDICTED: RNA-binding protein 47 [Ovis aries]
Length = 546
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 112/257 (43%), Gaps = 55/257 (21%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G + VG
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVG-LLGVG---------------------------- 100
Query: 163 DELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
C D RLFIG +PK +E + I V GV + +
Sbjct: 101 ---CGVD-------------TCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAAD 144
Query: 223 PSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKA 282
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 145 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVKI 202
Query: 283 LYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
LYV+NL TT +K+ F + G V +V RD+ F+H+A R A+ A+ +
Sbjct: 203 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVHAMNNL 256
Query: 341 EKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 257 NGTELEGSCLEVTLAKP 273
>gi|357614246|gb|EHJ68984.1| hypothetical protein KGM_20249 [Danaus plexippus]
Length = 260
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 89/153 (58%), Gaps = 8/153 (5%)
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST 269
G+ + + P +NRGF F+ Y ++ A +++++ + K+ G V WA+P+
Sbjct: 13 GLVEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEE 72
Query: 270 PDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAE 329
PD S+VK LYV+NL + T + LKE F+R+G V +V +D+ F+H+ +
Sbjct: 73 PDEQTM--SKVKVLYVRNLTQEITEEALKEEFERYGNVERV------KKIKDYAFVHFED 124
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKR 362
R A+KA+++ + E+ G LEV+LA+P ++K+
Sbjct: 125 RDCAVKAMQEIDGKELGGARLEVSLAKPPSDKK 157
>gi|74194008|dbj|BAE36923.1| unnamed protein product [Mus musculus]
Length = 368
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 91/166 (54%), Gaps = 12/166 (7%)
Query: 199 EFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT 258
EF KV E G+ + L P +NRGF F+ Y ++ A +R+++ S K+ GN
Sbjct: 7 EFSKVTE----GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNV 62
Query: 259 PTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG 318
TV WA+P PD A +VK L+V+NL T + L++ F + G++ +V
Sbjct: 63 GTVEWADPIEDPDPEVMA--KVKVLFVRNLANTVTEEILEKSFSQFGKLERV------KK 114
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+D+ FIH+ ER A+KA+++ +++G+ +E+ A+P KR E
Sbjct: 115 LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKE 160
>gi|357133920|ref|XP_003568569.1| PREDICTED: RNA-binding protein Musashi homolog 2-like [Brachypodium
distachyon]
Length = 366
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 143/349 (40%), Gaps = 74/349 (21%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
S++ + G+P D E LR+ G + + ++KD+ SG S+GF +V F S+E AK ++
Sbjct: 3 SKLVVLGIPWDVDTEGLREYMSKFGPLDDCIVMKDRSSGRSRGFGYVTFSSEEDAKNVVN 62
Query: 164 ELCSKDFKGKTI-----------RCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVD 212
C +T+ R S ++ R+F+ +P+S E FR+ + G +
Sbjct: 63 --CEHILGDRTLEVKIATPKEEMRASGNKKATRIFVARIPQSVDESMFRRHFQSFG---E 117
Query: 213 TIELIKDPQAPSR-NRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS--- 268
I+L + S+ +RG FV + + C D + +LDG T V A PK
Sbjct: 118 IIDLYMPKELGSKDHRGIGFVTFRSAECVD----DVMKETHELDGTTVVVDRATPKDEDV 173
Query: 269 --------TPDHS----------AAAASQVKAL--------------------------- 283
P H AA++ AL
Sbjct: 174 RHPPRSRRAPVHGDGGYGSYNAYITAATRYAALGVPTLYDHPGQAYGRGYSNEPLVTGKK 233
Query: 284 -YVKNLPENTTTKQLKELFQRHGEVTKVVTP--PGKSGKRDFGFIHYAERSSALKAIKDT 340
+V LP+ T L + F R G + P P +SG R FGF+ +A+ A + +
Sbjct: 234 IFVGRLPQEANTDDLWDYFGRFGRIVDAYIPKDPKRSGHRGFGFVTFADDGVADRVAR-- 291
Query: 341 EKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGT 389
+EI GQ + V A P + Y +AG + + P YG F+G+
Sbjct: 292 RSHEILGQEVAVDSAAPLEGGSSGSGYMESAGPYGAYGPMLSYGHFSGS 340
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 23/231 (9%)
Query: 184 NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYS 243
++L + +P + R+ + GP D I ++KD ++ R+RGF +V + + A
Sbjct: 3 SKLVVLGIPWDVDTEGLREYMSKFGPLDDCI-VMKD-RSSGRSRGFGYVTFSSEEDA--- 57
Query: 244 RQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQR 303
+ + + L T V A PK + A+ + ++V +P++ + FQ
Sbjct: 58 -KNVVNCEHILGDRTLEVKIATPKE--EMRASGNKKATRIFVARIPQSVDESMFRRHFQS 114
Query: 304 HGEVTKVVTPP--GKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNK 361
GE+ + P G R GF+ + +K+T +E+DG + V A P+
Sbjct: 115 FGEIIDLYMPKELGSKDHRGIGFVTFRSAECVDDVMKET--HELDGTTVVVDRATPKDED 172
Query: 362 RTEGVYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIY 412
S A VH G GYGS+ AY + +T A L P +Y
Sbjct: 173 VRHPPRSRRAPVHGDG----GYGSY--NAYITAATRY-----AALGVPTLY 212
Score = 41.6 bits (96), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G ++F+G LP++A+ +DL D G + + + KD +GF FV F VA R
Sbjct: 231 GKKIFVGRLPQEANTDDLWDYFGRFGRIVDAYIPKDPKRSGHRGFGFVTFADDGVADRV 289
>gi|313212996|emb|CBY36886.1| unnamed protein product [Oikopleura dioica]
Length = 404
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 91/172 (52%), Gaps = 9/172 (5%)
Query: 177 CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYN 236
CS S N RLF+G +PKS ++E ++ V V + + ++NRGFAFV Y
Sbjct: 238 CS-SVDNCRLFVGGIPKSRKKEEIMHELKKVTDKVADVIVYPSAADKNKNRGFAFVEYET 296
Query: 237 NACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQ 296
+ A +R+K+ S +L GN V WAEP+ D +VK LYV+NL T+ +
Sbjct: 297 HKAAAMARRKLVSGRVQLWGNPIAVDWAEPEEDVDDD--IMKEVKVLYVRNLLIETSEES 354
Query: 297 LKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQ 348
L+ F ++G+V +V RD+ F+H+ ER SA A+K +DG+
Sbjct: 355 LRAHFSQYGQVERV------KKIRDYAFVHFVERESADAAVKAGCSQRLDGE 400
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 129/273 (47%), Gaps = 17/273 (6%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G+ +++G L SE L D+ PIG V + + +D + S G+A+V F E ++AI
Sbjct: 37 GASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGRKAI 96
Query: 163 DELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTI 214
++L KGK R S+ + L +I N+ + K + G + +
Sbjct: 97 EQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFG-NILSC 155
Query: 215 ELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNTPTVSW-AEPKSTPDH 272
++ D S RGF FV + N + A R + + N ++ V+W K
Sbjct: 156 KVATDDNGVS--RGFGFVHFENESDA---RDAIEAVNGMLMNDQEVYVAWHVSKKDRQSK 210
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
++ +YVKN+ T+ ++ ++LF ++G++T V GK R FGFI++ + S
Sbjct: 211 LEEVKAKFTNIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKDSEGKLRGFGFINFEDHS 270
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A +A+ + + + GQ L V A+ + ++ E
Sbjct: 271 TAARAVDELNESDFRGQTLYVGRAQKKHERQQE 303
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 128/287 (44%), Gaps = 36/287 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID-- 163
++I L + L + G + + D D+G S+GF FV F ++ A+ AI+
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATD-DNGVSRGFGFVHFENESDARDAIEAV 186
Query: 164 --------------ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
+ KD + K TN +++ N+ +++EF ++ G
Sbjct: 187 NGMLMNDQEVYVAWHVSKKDRQSKLEEVKAKFTN--IYVKNIDLETSQEEFEQLFSKYGK 244
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK-- 267
+ + L KD + + RGF F+ + +++ A + ++ ++F+ G T V A+ K
Sbjct: 245 -ITSAVLEKDSEG--KLRGFGFINFEDHSTAARAVDELNESDFR--GQTLYVGRAQKKHE 299
Query: 268 ---------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG 318
T A Q L++KNL ++ ++LK+ F G +T V ++G
Sbjct: 300 RQQELKKQYETARLEKLAKYQGVNLFIKNLDDSIDDEKLKDEFAPFGTITSVKVMKDEAG 359
Query: 319 K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
R FGF+ ++ A KAI + + + G+ L VA+A+ + +R +
Sbjct: 360 SSRGFGFVCFSTPEEATKAITEKNQQLVAGKPLYVAIAQRKEVRRNQ 406
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +FI L +E L+D P G + V ++KD ++G S+GF FV F + E A +A
Sbjct: 320 QGVNLFIKNLDDSIDDEKLKDEFAPFGTITSVKVMKD-EAGSSRGFGFVCFSTPEEATKA 378
Query: 162 IDELCSKDFKGKTIRCSMSE 181
I E + GK + ++++
Sbjct: 379 ITEKNQQLVAGKPLYVAIAQ 398
>gi|388514909|gb|AFK45516.1| unknown [Lotus japonicus]
Length = 150
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 73/113 (64%), Gaps = 5/113 (4%)
Query: 334 LKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPH-AGYGSFAGTAYG 392
+KA+K+TEKYEIDG+ LE +LA+PQ ++R+ G + V PH GYG G G
Sbjct: 1 MKALKNTEKYEIDGKNLECSLAKPQADQRSSGTSNSQKPVVLPTYPHRLGYGMVGGAYGG 60
Query: 393 SVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMP 445
+ AG QP++YG G PAGM M+PM+LPDGRIGYV+QQPG+Q P
Sbjct: 61 IGAG----YGAAGFAQPLMYGMGANPAGMPMMPMLLPDGRIGYVVQQPGLQQP 109
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 131/270 (48%), Gaps = 14/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E+ L +G V + + +D + S G+A+V F A+RA+D
Sbjct: 109 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQRALD 168
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ +S K + G + + +
Sbjct: 169 TMNFDTIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSS-K 227
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D Q +RG+AFV + N AD + ++M A K D + K
Sbjct: 228 VMSDDQG---SRGYAFVHFQNQIAADRAIEEMNGALLK-DCRLFVGRFKNRKDREAELRN 283
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
A++ +Y+KN ++ ++LKE+F ++G+ V SGK + FGF+ + +A
Sbjct: 284 KANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAK 343
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+++ +I+GQ+L V A+ ++ ++ E
Sbjct: 344 KAVEEMNGKDINGQLLFVGRAQKKSERQAE 373
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 121/277 (43%), Gaps = 34/277 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + + L + G++ ++ D D G S+G+AFV F+++ A RAI+E+
Sbjct: 199 VFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSD-DQG-SRGYAFVHFQNQIAADRAIEEM 256
Query: 166 ---CSKD-------FKGKT-----IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
KD FK + +R +E N ++I N ++ ++V G
Sbjct: 257 NGALLKDCRLFVGRFKNRKDREAELRNKANEFTN-VYIKNFGDDMDDERLKEVFSKYGKT 315
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTP 270
+ +++++ D S+ GF FV + ++ A + ++M + ++G V A+ KS
Sbjct: 316 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGKD--INGQLLFVGRAQKKSER 370
Query: 271 DHSAAAA-----------SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK 319
Q LY+KNL + ++L F G +++V +
Sbjct: 371 QAELKQVFEQLKQERFRRCQGMKLYIKNLDDTIDDEKLWREFSSFGSISRVKIMREEGRS 430
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FG I ++ A KA+ + + + L +ALA+
Sbjct: 431 KGFGLICFSSPEEATKAMAEMNGRILGSKPLYIALAQ 467
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 13/122 (10%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
++ K++ +L + V+I D +E L+++ G+ V ++ D SG+SKG
Sbjct: 272 KNRKDREAELRNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTD-SSGKSKG 330
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNV-PKSWTEKEFRKVIE 205
F FV+F S E AK+A++E+ KD G+ LF+G KS + E ++V E
Sbjct: 331 FGFVSFDSHEAAKKAVEEMNGKDINGQL-----------LFVGRAQKKSERQAELKQVFE 379
Query: 206 DV 207
+
Sbjct: 380 QL 381
>gi|197260810|gb|ACH56905.1| heterogeneous nuclear ribonucleoprotein r [Simulium vittatum]
Length = 252
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 83/139 (59%), Gaps = 8/139 (5%)
Query: 226 NRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYV 285
NRGF F+ Y ++ A +++++ + K+ G V WA+P+ PD S+VK LYV
Sbjct: 2 NRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDE--GTMSKVKVLYV 59
Query: 286 KNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEI 345
+NL + + ++LKE F+ +G V +V +D+ F+HY +R + + A++D + +I
Sbjct: 60 RNLTHDISEEKLKEHFENYGRVERV------KKIKDYAFVHYEDRDNTVLAMRDLDGKDI 113
Query: 346 DGQVLEVALARPQTNKRTE 364
G +EV+LA+P ++K+ +
Sbjct: 114 GGSCIEVSLAKPPSDKKKK 132
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 131/275 (47%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F A+RA+D
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQDAADRAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEV--TKVVT-PPGKSGKRDFGFIHYAE 329
A A + +Y+KN ++ ++LKELF ++G+ KV+T P GKS R FGFI Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDPTGKS--RGFGFISYEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA++D E++G+ + V A+ + ++ E
Sbjct: 241 HEDANKAVEDMNGTELNGKTVFVGRAQKKMERQAE 275
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 125/279 (44%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F +++ A RAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKM 158
Query: 166 C------SKDFKGKT---------IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K F G+ + E N ++I N ++ +++ + G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGDDMNDERLKELFDKYGKT 217
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ +++++ DP SR GF F+ Y + A+ + + M +L+G T V A+ K
Sbjct: 218 L-SVKVMTDPTGKSR--GFGFISYEKHEDANKAVEDMNGT--ELNGKTVFVGRAQKKMER 272
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q LY+KNL + ++L++ F G +T KV+ G+S
Sbjct: 273 QAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/278 (20%), Positives = 117/278 (42%), Gaps = 46/278 (16%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T+DA + ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I D ++E L++L + G+ V ++ D +G+S+GF F+++ E A +A++++
Sbjct: 194 YIKNFGDDMNDERLKELFDKYGKTLSVKVMTD-PTGKSRGFGFISYEKHEDANKAVEDMN 252
Query: 167 SKDFKGKTI-------------------------RCSMSETNNRLFIGNVPKSWTEKEFR 201
+ GKT+ R S + N L+I N+ + +++ R
Sbjct: 253 GTELNGKTVFVGRAQKKMERQAELKRKFEMLKQERISRYQGVN-LYIKNLDDTIDDEKLR 311
Query: 202 KVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT- 260
K G ++++ R++GF FV + + + + + +T N ++ G+ P
Sbjct: 312 KEFSPFGSITSAKVMLEE----GRSKGFGFVCF---SSPEEATKAVTEMNGRIVGSKPLY 364
Query: 261 VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
V+ A+ K + ++ +P NT Q +
Sbjct: 365 VALAQRKEERKAHLTNQYMQRIAGMRAMPANTIINQFQ 402
>gi|270002294|gb|EEZ98741.1| hypothetical protein TcasGA2_TC001296 [Tribolium castaneum]
Length = 339
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 143/298 (47%), Gaps = 40/298 (13%)
Query: 90 KEKHDQLLAL------PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGE 143
+EK+ ++ L PP GSEVF+G +P S+++L + G V+ + D D+G
Sbjct: 12 REKYQKIYLLSPGSLTPPPGSEVFVGNIPSVISDDELIFIFSEAGRVYRFQRMID-DNGN 70
Query: 144 SKGFAFVAFRSKEVAKRAIDELCSKDF---KGKTIRCSMSETNNRLFIGNVPKSWTEKEF 200
+K FAF+++ + E A +A+ L F K + + +S N RL+ GN+P+ T+
Sbjct: 71 NKPFAFISYHNDEDANKAV--LFFHKFSIRKHRKLNVHLSVNNCRLYFGNIPREMTK--- 125
Query: 201 RKVIEDVGPG-VDTIE-LIKDPQAPSR-----NRGFAFVLYYNNACADYSRQKMTSANFK 253
EDV ++ IE ++K PSR NRG+AFV + ++ A ++++++ F
Sbjct: 126 ----EDVMLNLLNFIEKIVKVLVLPSRCNTALNRGYAFVDFVSHTLAAFAKRQLELGLF- 180
Query: 254 LDGNTPTVSWA--EPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVV 311
G TV WA EP P Q+K L KN+P + + ++ +T V
Sbjct: 181 WGGRHITVEWAYREPLVPP----FIFLQIKCLIFKNIPIDCSRCVFRKFLSLFVHITTV- 235
Query: 312 TPPGKSGKRD-FGFIHYAERSSALKAIKDTEKY--EIDGQVLEVALARPQTNKRTEGV 366
+ K+D F+H+ +A AIK + I + + V ARP +R + +
Sbjct: 236 ---RRIYKKDSHAFVHFQSWEAAEIAIKTLRSHILRIYDREIRVEWARPPNYRRKKTI 290
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKVIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|124359488|gb|ABN05926.1| RNA-binding region RNP-1 (RNA recognition motif) [Medicago
truncatula]
Length = 824
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 124/239 (51%), Gaps = 10/239 (4%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+GGL K+A+E DLR + +GE+ EV + + + +KGFA + F + E KRA+ E
Sbjct: 195 EVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAE 254
Query: 165 LCSKDFKGKT--IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQ 221
L + GK I + + ++ L++ N+ KSW ++ ++ ++ G + L++D
Sbjct: 255 LKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKHYGVESFKDLTLLEDDN 314
Query: 222 APSRNRGFAFVLY--YNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
N G AF+ + ++++ Y R + T F +D VS+A S D +Q
Sbjct: 315 NEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVD-KPAEVSFA--NSFIDLGDDIMAQ 371
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKR--DFGFIHYAERSSALKA 336
VK +++ LP + ++ L +++G V KV G R ++GF+ + ++A++
Sbjct: 372 VKTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARRKNYGFVTFGTHAAAVEC 430
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 126/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI+G+++ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEINGKIIFVGRAQKKVERQAE 275
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 128/289 (44%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDEN 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M +++G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EINGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 104/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E+L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 132/277 (47%), Gaps = 14/277 (5%)
Query: 97 LALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
+A + +++G L D +E+ L +G V + + +D + S G+A+V F
Sbjct: 3 IAAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLA 62
Query: 157 VAKRAIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVG 208
A++A+D + KGK+IR S+ + L FI N+ KS K + G
Sbjct: 63 DAQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFG 122
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
+ + +++ D Q RG+AFV + N AD + ++M A K D + K
Sbjct: 123 KILSS-KVMSDDQGS---RGYAFVHFQNQIAADRAIEEMNGALLK-DCRLFVGRFKNRKD 177
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHY 327
A++ +Y+KN ++ ++LKE+F ++G+ V SGK + FGF+ +
Sbjct: 178 REAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGFVSF 237
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A KA+++ +I+GQ+L V A+ + ++ E
Sbjct: 238 DSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAE 274
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 91/197 (46%), Gaps = 32/197 (16%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
++ K++ +L + V+I D +E L+++ G+ V +++D SG+SKG
Sbjct: 173 KNRKDREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRD-SSGKSKG 231
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRC--------------SMSETNNR------- 185
F FV+F S E AK+A++E+ KD G+ + M E R
Sbjct: 232 FGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKRERFRRCQ 291
Query: 186 ---LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADY 242
L+I N+ ++ +++ R+ G +I +K Q R++GF + + + +
Sbjct: 292 GVKLYIKNLDETIDDEKLRREFSSFG----SISRVKVMQEEGRSKGFGLICF---SSPEE 344
Query: 243 SRQKMTSANFKLDGNTP 259
+ + MT N ++ G+ P
Sbjct: 345 ATKAMTEMNGRILGSKP 361
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 125/279 (44%), Gaps = 36/279 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L + G++ ++ D D G S+G+AFV F+++ A RAI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQG-SRGYAFVHFQNQIAADRAIEEM 157
Query: 166 ---CSKD-------FKGKTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGP 209
KD FK + R +E N+ ++I N ++ ++V G
Sbjct: 158 NGALLKDCRLFVGRFKNRKDR--EAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGK 215
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST 269
+ ++++++D S+ GF FV + ++ A + ++M + ++G V A+ K+
Sbjct: 216 TL-SVKVMRDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGKD--INGQLLFVGRAQKKAE 270
Query: 270 PDHSAAAA-SQVK----------ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG 318
Q+K LY+KNL E ++L+ F G +++V +
Sbjct: 271 RQAELKQMFEQLKRERFRRCQGVKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQEEGR 330
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357
+ FG I ++ A KA+ + + + L +ALA+
Sbjct: 331 SKGFGLICFSSPEEATKAMTEMNGRILGSKPLNIALAQK 369
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 126/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI+G+++ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEINGKIIFVGRAQKKVERQAE 275
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 128/289 (44%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDEN 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M +++G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EINGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 104/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E+L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|357507979|ref|XP_003624278.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499293|gb|AES80496.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 822
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 124/239 (51%), Gaps = 10/239 (4%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+GGL K+A+E DLR + +GE+ EV + + + +KGFA + F + E KRA+ E
Sbjct: 195 EVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAE 254
Query: 165 LCSKDFKGKT--IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQ 221
L + GK I + + ++ L++ N+ KSW ++ ++ ++ G + L++D
Sbjct: 255 LKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKHYGVESFKDLTLLEDDN 314
Query: 222 APSRNRGFAFVLY--YNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
N G AF+ + ++++ Y R + T F +D VS+A S D +Q
Sbjct: 315 NEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVD-KPAEVSFA--NSFIDLGDDIMAQ 371
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKR--DFGFIHYAERSSALKA 336
VK +++ LP + ++ L +++G V KV G R ++GF+ + ++A++
Sbjct: 372 VKTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARRKNYGFVTFGTHAAAVEC 430
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKVIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDEN 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKVIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 104/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E+L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKVIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 132/277 (47%), Gaps = 14/277 (5%)
Query: 97 LALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
+A + +++G L D +E+ L +G V + + +D + S G+A+V F
Sbjct: 3 VAAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLA 62
Query: 157 VAKRAIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVG 208
A++A+D + KGK+IR S+ + L FI N+ KS K + G
Sbjct: 63 DAQKALDTMNFDTIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFG 122
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
+ + +++ D Q RG+AFV + N AD + ++M A K D + +
Sbjct: 123 KILSS-KVMSDDQGS---RGYAFVHFQNQMAADRAIEEMNGALLK-DCRLFVGRFKNRQD 177
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHY 327
A++ +Y+KN ++ K+L+E+F ++G+ V +GK + FGF+ +
Sbjct: 178 REAELQNKANEFTNIYIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDSTGKSKGFGFVSF 237
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A KA+++ +I+GQ+L V A+ + ++ E
Sbjct: 238 YSHEAAQKAVEEMNGKDINGQLLFVGRAQKKAERQAE 274
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 129/293 (44%), Gaps = 38/293 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L + G++ ++ D D G S+G+AFV F+++ A RAI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQG-SRGYAFVHFQNQMAADRAIEEM 157
Query: 166 ---CSKD-------FKGKTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGP 209
KD FK + R +E N+ ++I N +K +V G
Sbjct: 158 NGALLKDCRLFVGRFKNRQDR--EAELQNKANEFTNIYIKNFGDDMDDKRLEEVFSKYGK 215
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS- 268
V +++++ D S+ GF FV +Y++ A + ++M + ++G V A+ K+
Sbjct: 216 TV-SVKVMTDSTGKSK--GFGFVSFYSHEAAQKAVEEMNGKD--INGQLLFVGRAQKKAE 270
Query: 269 ----------TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG 318
Q LY+KNL + ++L+ F G +++V +
Sbjct: 271 RQAELKQMFEQQKQERFRRCQGVKLYIKNLDDTIDDEKLRREFSSFGSISRVKVMKEEGR 330
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAA 371
+ FG I ++ A +A+ + + + L +ALA Q+ ++ G+ +A
Sbjct: 331 SKGFGLICFSSPEEATRAMTEMNGRILGSKPLNIALA--QSLQQVXGMLVISA 381
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKVIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKVIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDEN 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKVIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 104/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E+L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKVIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKVIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKVIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKVIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKVIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKVIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|357507983|ref|XP_003624280.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499295|gb|AES80498.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 729
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 124/239 (51%), Gaps = 10/239 (4%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+GGL K+A+E DLR + +GE+ EV + + + +KGFA + F + E KRA+ E
Sbjct: 195 EVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAE 254
Query: 165 LCSKDFKGKT--IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQ 221
L + GK I + + ++ L++ N+ KSW ++ ++ ++ G + L++D
Sbjct: 255 LKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKHYGVESFKDLTLLEDDN 314
Query: 222 APSRNRGFAFVLY--YNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
N G AF+ + ++++ Y R + T F +D VS+A S D +Q
Sbjct: 315 NEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVD-KPAEVSFA--NSFIDLGDDIMAQ 371
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKR--DFGFIHYAERSSALKA 336
VK +++ LP + ++ L +++G V KV G R ++GF+ + ++A++
Sbjct: 372 VKTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARRKNYGFVTFGTHAAAVEC 430
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 126/275 (45%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT---PPGKSGKRDFGFIHYAE 329
A A + +Y+KN E + LKELF + G+ V P GKS + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKS--KGFGFVSYEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 241 HEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPTG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKVIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PTGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 125/272 (45%), Gaps = 21/272 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
A A + +Y+KN E + LKELF + V + P GKS + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSKTLSVKVMRDPSGKS--KGFGFVSYEKHED 240
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+++ V A+ + ++ E
Sbjct: 241 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 272
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 127/286 (44%), Gaps = 55/286 (19%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ---------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSW 263
++++++DP +++GF FV Y + A+ + ++M ++ G V
Sbjct: 207 LKELFSKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKIIFVGR 262
Query: 264 AEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KV 310
A+ K + Q LY+KNL + ++L++ F G +T KV
Sbjct: 263 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV 322
Query: 311 VTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 MLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 366
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEITGKVIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDEN 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EITGKVIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 104/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E+L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 126/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI+G+V+ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEINGKVIFVGRAQKKVERQAE 275
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 131/295 (44%), Gaps = 58/295 (19%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M +++G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EINGKVIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR 362
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+ + ++
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEINGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEITGKVIFVGRAQKKVERQAE 275
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDEN 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EITGKVIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 104/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E+L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEITGKVIFVGRAQKKVERQAE 275
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDEN 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EITGKVIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 104/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E+L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+++ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 132/275 (48%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 12 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 72 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 130
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 131 VVCDENG---SKGYAFVHFETQDAADRAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 183
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEV--TKVVT-PPGKSGKRDFGFIHYAE 329
A A + +Y+KN ++ ++LKELF ++G+ KV+T P GKS R FGF+ Y +
Sbjct: 184 MGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKS--RGFGFVSYEK 241
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ E++G+ + V A+ + ++ E
Sbjct: 242 HEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAE 276
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 125/279 (44%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F +++ A RAI+++
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKM 159
Query: 166 CSK----------DFKGKTIR-----CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
FK + R E N ++I N ++ +++ + G
Sbjct: 160 NGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTN-VYIKNFGDDMDDQRLKELFDKYGKT 218
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ +++++ DP SR GF FV Y + A+ + ++M +L+G T V A+ K
Sbjct: 219 L-SVKVMTDPTGKSR--GFGFVSYEKHEDANKAVEEMNGT--ELNGKTVFVGRAQKKMER 273
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q LY+KNL + ++L++ F G +T KV+ G+S
Sbjct: 274 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS 333
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 334 --KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 370
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/278 (20%), Positives = 115/278 (41%), Gaps = 46/278 (16%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T+DA + ++ K + KE+ ++ A + V
Sbjct: 135 ENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNV 194
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I D ++ L++L + G+ V ++ D +G+S+GF FV++ E A +A++E+
Sbjct: 195 YIKNFGDDMDDQRLKELFDKYGKTLSVKVMTD-PTGKSRGFGFVSYEKHEDANKAVEEMN 253
Query: 167 SKDFKGKTI-------------------------RCSMSETNNRLFIGNVPKSWTEKEFR 201
+ GKT+ R S + N L+I N+ + +++ R
Sbjct: 254 GTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVN-LYIKNLDDTIDDEKLR 312
Query: 202 KVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT- 260
K G ++++ R++GF FV + + + + + +T N ++ G+ P
Sbjct: 313 KEFSPFGSITSAKVMLEE----GRSKGFGFVCF---SSPEEATKAVTEMNGRIVGSKPLY 365
Query: 261 VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
V+ A+ K + ++ +P N Q +
Sbjct: 366 VALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQ 403
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 126/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI+G+++ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEINGKIIFVGRAQKKVERQAE 275
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 128/289 (44%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDEN 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M +++G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EINGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 104/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E+L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+++ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|308802151|ref|XP_003078389.1| Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) (ISS)
[Ostreococcus tauri]
gi|116056841|emb|CAL53130.1| Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) (ISS),
partial [Ostreococcus tauri]
Length = 430
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 141/311 (45%), Gaps = 38/311 (12%)
Query: 78 EDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIG-EVFEVG-- 134
++KR S+ E + + EVFIG + +A+E+ +R + G E VG
Sbjct: 125 DEKREISVFAAEDAADELIAGRARRDGEVFIGSISLEATEDAVRRALKACGAETGAVGFE 184
Query: 135 LVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSK--DFKGKTIRCSMSETNNRLFIGNVP 192
++ D+ +G+ +G+AF + E A +AI+ + S + G+ IR S+ R+F+G +
Sbjct: 185 MMTDRATGKHRGYAFARYGDPESAAKAIETIESARVEIGGQKIRASVKPNKTRVFVGGIR 244
Query: 193 KSWTEKEFRKVIEDVGPGVDTIELIKDP------QAPSRNRGFAFVLYYNNACADYSRQK 246
K T E + + G G++ EL + + N G + YYN ACA+ +
Sbjct: 245 KDATRAECVEALRARGAGLEFFELARPKKKKEGVEQTDENGGHGWATYYNEACAERFMKN 304
Query: 247 MTSANFKL------DGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNL-PENTTTKQLKE 299
M A KL D T SWA K+ SAA ++ L+V++L N T + ++E
Sbjct: 305 MREAEDKLPIANESDTRGMTTSWATVKA----SAAKVQGIRTLHVRDLNSTNATEEAMRE 360
Query: 300 LFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKY--------------EI 345
F R G++ V + + F ++ +A + A KA+ + E +
Sbjct: 361 CFGRFGDIEDVQLRTDR--EPHFAWVTFANPNDAEKALGECEPVPDAPEGRKGGSFISSV 418
Query: 346 DGQVLEVALAR 356
DG L +A A+
Sbjct: 419 DGATLNIAPAK 429
>gi|357507981|ref|XP_003624279.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499294|gb|AES80497.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 514
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 124/239 (51%), Gaps = 10/239 (4%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+GGL K+A+E DLR + +GE+ EV + + + +KGFA + F + E KRA+ E
Sbjct: 195 EVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAE 254
Query: 165 LCSKDFKGKT--IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQ 221
L + GK I + + ++ L++ N+ KSW ++ ++ ++ G + L++D
Sbjct: 255 LKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKHYGVESFKDLTLLEDDN 314
Query: 222 APSRNRGFAFVLY--YNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
N G AF+ + ++++ Y R + T F +D VS+A S D +Q
Sbjct: 315 NEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVD-KPAEVSFA--NSFIDLGDDIMAQ 371
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKR--DFGFIHYAERSSALKA 336
VK +++ LP + ++ L +++G V KV G R ++GF+ + ++A++
Sbjct: 372 VKTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARRKNYGFVTFGTHAAAVEC 430
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+++ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 126/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI+G+++ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEINGKIIFVGRAQKKVERQAE 275
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 128/289 (44%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDEN 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M +++G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EINGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 104/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E+L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+++ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 131/275 (47%), Gaps = 21/275 (7%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G+ +++G L SE L D+ PIG V + + +D + S G+A+V F E +AI
Sbjct: 37 GASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAI 96
Query: 163 DELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTI 214
++L KGK R S+ + L +I N+ + K + G + +
Sbjct: 97 EQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFG-NILSC 155
Query: 215 ELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
++ D S RGF FV + N + A R + + + L N V A S D
Sbjct: 156 KVATDENGVS--RGFGFVHFENESDA---RDAIEAVDGML-MNDQEVYVALHVSKKDRQ- 208
Query: 275 AAASQVKA----LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAE 329
+ +VKA +YVKN+ + T+ ++ +ELF ++G++T V GK R FGF+++ +
Sbjct: 209 SKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFED 268
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
++A KA+ + + E GQ L V A+ + + E
Sbjct: 269 HAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQE 303
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 127/287 (44%), Gaps = 36/287 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID-- 163
++I L + L + G + + D ++G S+GF FV F ++ A+ AI+
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATD-ENGVSRGFGFVHFENESDARDAIEAV 186
Query: 164 --------------ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
+ KD + K TN +++ N+ + +++EF ++ G
Sbjct: 187 DGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTN--VYVKNIDQETSQEEFEELFGKYGK 244
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS- 268
+ + L KD + + RGF FV + ++A A + ++ FK G V A+ K
Sbjct: 245 -ITSAVLEKDSEG--KLRGFGFVNFEDHAAAAKAVDELNELEFK--GQKLYVGRAQKKYE 299
Query: 269 -----TPDHSAA-----AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG 318
+ AA A Q L+VKNL ++ ++LKE F G +T ++G
Sbjct: 300 RLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETG 359
Query: 319 K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
R FGF+ ++ A KAI + + + G+ L VA+A+ + +R +
Sbjct: 360 NSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKEVRRNQ 406
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +F+ L +E L++ P G + +++D ++G S+GF FV F + E A +A
Sbjct: 320 QGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGFVCFSTPEEATKA 378
Query: 162 IDELCSKDFKGKTIRCSMSE 181
I E + GK + ++++
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQ 398
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 126/275 (45%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT---PPGKSGKRDFGFIHYAE 329
A A + +Y+KN E + LKELF + G+ V P GKS + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 241 HEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 126/279 (45%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CS------KDFKGKT---------IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K F G+ + E N ++I N + ++ +++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGEEMDDESLKELFSQFGKT 217
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ ++++++DP +++GF FV Y + A+ + ++M ++ G V A+ K
Sbjct: 218 L-SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKVIFVGRAQKKVER 272
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q LY+KNL + ++L++ F G +T KV+ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D + G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPN-GKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKVIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKVIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKVIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 132/273 (48%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E+ L +G V + + +D + S G+A+V F A++A+D
Sbjct: 203 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHVADAQKALD 262
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK+IR S+ + L FI N+ KS K + G + + +
Sbjct: 263 TMNFDVIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSTFGKILSS-K 321
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D Q ++G+AFV + N + AD + ++M K V + KS D +
Sbjct: 322 VMSDDQG---SKGYAFVHFQNQSAADRAIEEMNGTLLK----NCRVFVSRFKSRKDRESE 374
Query: 276 A---ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
AS+ +Y+KN ++ +LKE+F ++G V SGK + FGF+ +A
Sbjct: 375 LKNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTDSSGKSKGFGFVSFASHE 434
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A A+++ +I+GQ++ V A+ + ++ E
Sbjct: 435 AAKNAVEEMNGKDINGQLIFVGRAQKKIERQAE 467
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 124/283 (43%), Gaps = 32/283 (11%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L + G++ ++ D D G SKG+AFV F+++ A RAI+E+
Sbjct: 293 VFIKNLDKSIDNKTLYEHFSTFGKILSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEM 350
Query: 166 CSKDFKGKTIRCSM--------SETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K + S SE N+ ++I N + ++V G +
Sbjct: 351 NGTLLKNCRVFVSRFKSRKDRESELKNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGTTL 410
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+++++ D S+ GF FV + ++ A + ++M + ++G V A+ K
Sbjct: 411 -SVKVMTDSSGKSK--GFGFVSFASHEAAKNAVEEMNGKD--INGQLIFVGRAQKKIERQ 465
Query: 272 HSAAAA-SQVK----------ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKR 320
Q++ LY+KNL + ++L++ F G +++V + +
Sbjct: 466 AELKQMFEQLRQERFRRCRGVKLYIKNLDDTIDDEKLRKEFASFGSISRVKVMQEEGRSK 525
Query: 321 DFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRT 363
FG I ++ A+KA+ + + + L +ALA+ ++T
Sbjct: 526 GFGLICFSSHEEAIKAMTEMNGRILGSKPLNIALAQRNEERKT 568
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 32/197 (16%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ K++ +L + V+I D + L+++ G V ++ D SG+SKG
Sbjct: 366 KSRKDRESELKNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTD-SSGKSKG 424
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN----------------------- 183
F FV+F S E AK A++E+ KD G+ I ++
Sbjct: 425 FGFVSFASHEAAKNAVEEMNGKDINGQLIFVGRAQKKIERQAELKQMFEQLRQERFRRCR 484
Query: 184 -NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADY 242
+L+I N+ + +++ RK G +I +K Q R++GF + + ++ +
Sbjct: 485 GVKLYIKNLDDTIDDEKLRKEFASFG----SISRVKVMQEEGRSKGFGLICFSSH---EE 537
Query: 243 SRQKMTSANFKLDGNTP 259
+ + MT N ++ G+ P
Sbjct: 538 AIKAMTEMNGRILGSKP 554
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 126/275 (45%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT---PPGKSGKRDFGFIHYAE 329
A A + +Y+KN E + LKELF + G+ V P GKS + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+++ V A+ + ++ E
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D + G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQREAGMRALPANAILNQFQ 402
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 126/275 (45%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT---PPGKSGKRDFGFIHYAE 329
A A + +Y+KN E + LKELF + G+ V P GKS + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 241 HEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 126/279 (45%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CS------KDFKGKT---------IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K F G+ + E N ++I N + ++ +++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGEEMDDESLKELFSQFGKT 217
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ ++++++DP +++GF FV Y + A+ + ++M ++ G V A+ K
Sbjct: 218 L-SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKVIFVGRAQKKVER 272
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q LY+KNL + ++L++ F G +T KV+ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D + G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPN-GKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 126/275 (45%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT---PPGKSGKRDFGFIHYAE 329
A A + +Y+KN E + LKELF + G+ V P GKS + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+++ V A+ + ++ E
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D + G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQREAGMRALPANAILNQFQ 402
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKVIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEITGKVIFVGRAQKKVERQAE 275
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDEN 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EITGKVIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 104/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E+L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 126/275 (45%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT---PPGKSGKRDFGFIHYAE 329
A A + +Y+KN E + LKELF + G+ V P GKS + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+++ V A+ + ++ E
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D + G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+++ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 126/275 (45%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT---PPGKSGKRDFGFIHYAE 329
A A + +Y+KN E + LKELF + G+ V P GKS + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+++ V A+ + ++ E
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D + G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 126/275 (45%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT---PPGKSGKRDFGFIHYAE 329
A A + +Y+KN E + LKELF + G+ V P GKS + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+++ V A+ + ++ E
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D + G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 129/275 (46%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F A+RA+D
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQDAADRAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV---VTPPGKSGKRDFGFIHYAE 329
A A + +Y+KN ++ ++LKELF ++G+ V + P GKS R FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKS--RGFGFVSYEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA++D E++G+ + V A+ + ++ E
Sbjct: 241 HEDANKAVEDMNGTELNGKTVFVGRAQKKNERQAE 275
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 126/279 (45%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F +++ A RAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKM 158
Query: 166 C------SKDFKGKT---------IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K F G+ + E N ++I N ++ +++ + G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGDDMDDERLKELFDKYGKT 217
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS-- 268
+ +++++ DP SR GF FV Y + A+ + + M +L+G T V A+ K+
Sbjct: 218 L-SVKVMMDPTGKSR--GFGFVSYEKHEDANKAVEDMNGT--ELNGKTVFVGRAQKKNER 272
Query: 269 ---------TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q LY+KNL + ++L++ F G +T KV+ G+S
Sbjct: 273 QAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/277 (20%), Positives = 115/277 (41%), Gaps = 44/277 (15%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T+DA + ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I D +E L++L + G+ V ++ D +G+S+GF FV++ E A +A++++
Sbjct: 194 YIKNFGDDMDDERLKELFDKYGKTLSVKVMMD-PTGKSRGFGFVSYEKHEDANKAVEDMN 252
Query: 167 SKDFKGKTIRCSMSETNN------------------------RLFIGNVPKSWTEKEFRK 202
+ GKT+ ++ N L+I N+ + +++ RK
Sbjct: 253 GTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 203 VIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT-V 261
G ++++ R++GF FV + + + + + +T N ++ G+ P V
Sbjct: 313 EFSPFGSITSAKVMLEE----GRSKGFGFVCF---SSPEEATKAVTEMNGRIVGSKPLYV 365
Query: 262 SWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ A+ K + ++ +P NT Q +
Sbjct: 366 ALAQRKEERKAHLTNQYMQRIAGMRAMPANTIINQFQ 402
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 126/275 (45%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT---PPGKSGKRDFGFIHYAE 329
A A + +Y+KN E + LKELF + G+ V P GKS + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+++ V A+ + ++ E
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D + G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 126/275 (45%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT---PPGKSGKRDFGFIHYAE 329
A A + +Y+KN E + LKELF + G+ V P GKS + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+++ V A+ + ++ E
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D + G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 126/275 (45%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT---PPGKSGKRDFGFIHYAE 329
A A + +Y+KN E + LKELF + G+ V P GKS + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+++ V A+ + ++ E
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D + G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 126/275 (45%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT---PPGKSGKRDFGFIHYAE 329
A A + +Y+KN E + LKELF + G+ V P GKS + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+++ V A+ + ++ E
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D + G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+++ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+++ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 126/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP S+ GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSGKSK--GFGFVSYEKHEDANKAVEEMNGK--EISGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 129/275 (46%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F A+RA+D
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQDAADRAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV---VTPPGKSGKRDFGFIHYAE 329
A A + +Y+KN ++ ++LKELF ++G+ V + P GKS R FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKS--RGFGFVSYEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA++D E++G+ + V A+ + ++ E
Sbjct: 241 HEDANKAVEDMNGTELNGKTVFVGRAQKKNERQAE 275
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 126/279 (45%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F +++ A RAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKM 158
Query: 166 C------SKDFKGKT---------IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K F G+ + E N ++I N ++ +++ + G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGDDMDDERLKELFDKYGKT 217
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS-- 268
+ +++++ DP SR GF FV Y + A+ + + M +L+G T V A+ K+
Sbjct: 218 L-SVKVMMDPTGKSR--GFGFVSYEKHEDANKAVEDMNGT--ELNGKTVFVGRAQKKNER 272
Query: 269 ---------TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q LY+KNL + ++L++ F G +T KV+ G+S
Sbjct: 273 QAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/277 (20%), Positives = 115/277 (41%), Gaps = 44/277 (15%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T+DA + ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I D +E L++L + G+ V ++ D +G+S+GF FV++ E A +A++++
Sbjct: 194 YIKNFGDDMDDERLKELFDKYGKTLSVKVMMD-PTGKSRGFGFVSYEKHEDANKAVEDMN 252
Query: 167 SKDFKGKTIRCSMSETNN------------------------RLFIGNVPKSWTEKEFRK 202
+ GKT+ ++ N L+I N+ + +++ RK
Sbjct: 253 GTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312
Query: 203 VIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT-V 261
G ++++ R++GF FV + + + + + +T N ++ G+ P V
Sbjct: 313 EFSPFGSITSAKVMLEE----GRSKGFGFVCF---SSPEEATKAVTEMNGRIVGSKPLYV 365
Query: 262 SWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ A+ K + ++ +P NT Q +
Sbjct: 366 ALAQRKEERKAHLTNQYMQRIAGMRAMPANTIINQFQ 402
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 126/275 (45%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT---PPGKSGKRDFGFIHYAE 329
A A + +Y+KN E + LKELF + G+ V P GKS + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+++ V A+ + ++ E
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D + G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQREAGMRALPANAILNQFQ 402
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 126/275 (45%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT---PPGKSGKRDFGFIHYAE 329
A A + +Y+KN E + LKELF + G+ V P GKS + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFIQFGKTLSVKVMRDPNGKS--KGFGFVSYEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+++ V A+ + ++ E
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFIQFGKTLSVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D + G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFIQFGKTLSVKVMRDPN-GKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 126/275 (45%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT---PPGKSGKRDFGFIHYAE 329
A A + +Y+KN E + LKELF + G+ V P GKS + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+++ V A+ + ++ E
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D + G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 126/275 (45%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT---PPGKSGKRDFGFIHYAE 329
A A + +Y+KN E + LKELF + G+ V P GKS + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+++ V A+ + ++ E
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D + G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 126/275 (45%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT---PPGKSGKRDFGFIHYAE 329
A A + +Y+KN E + LKELF + G+ V P GKS + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+++ V A+ + ++ E
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D + G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + LK+LF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEIGGKVIFVGRAQKKVERQAE 275
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKDLFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EIGGKVIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L+DL G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEIGGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|148709768|gb|EDL41714.1| mCG1979, isoform CRA_b [Mus musculus]
Length = 767
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 108/196 (55%), Gaps = 15/196 (7%)
Query: 167 SKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP-- 223
+K+F+ G+ + S N RLF+G +PK+ +E ++ V GV +++I P A
Sbjct: 290 AKNFETGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDVIVYPSAADK 347
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKAL 283
++NRGFAFV Y ++ A +R+++ +L G+ V WAEP+ D S VK L
Sbjct: 348 TKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDED--TMSSVKIL 405
Query: 284 YVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTE 341
YV+NL +T+ + +++ F + G V +V RD+ F+H++ R A++A+K
Sbjct: 406 YVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAMKALN 459
Query: 342 KYEIDGQVLEVALARP 357
+DG +EV LA+P
Sbjct: 460 GKVLDGSPIEVTLAKP 475
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G E+FIG LP+D E++L LCE IG+++E+ L+ D + G ++G+AFV F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 160 RAIDELCSKDFK 171
AI +L + + +
Sbjct: 111 NAIKQLNNYEIR 122
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 134/273 (49%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E+ L +G V + + +D+ + S G+A+V F A++A+D
Sbjct: 67 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 126
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK+IR S+ + L FI N+ KS K + G + + +
Sbjct: 127 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-K 185
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D Q ++G+AFV + N + AD + ++M K V K+ D A
Sbjct: 186 VMSDDQG---SKGYAFVHFQNQSAADRAIEEMNGKLLK----GCKVFVGRFKNRKDREAE 238
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
+ AS+ +Y+KN + ++LK++F ++G+ V SGK + FGF+ +
Sbjct: 239 LRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 298
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A KA+++ +I+GQ++ V A+ + ++ E
Sbjct: 299 AAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 331
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 118/277 (42%), Gaps = 34/277 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L + G++ ++ D D G SKG+AFV F+++ A RAI+E+
Sbjct: 157 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEM 214
Query: 166 CSKDFKGKTI---------------RCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K KG + R SE N ++I N ++ + V G
Sbjct: 215 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-IYIKNFGGDMDDERLKDVFSKYGKT 273
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ +++++ D S+ GF FV + ++ A + ++M + ++G V A+ K
Sbjct: 274 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 328
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK 319
Q LY+KNL + ++L+ F G +++V +
Sbjct: 329 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 388
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FG I ++ A KA+ + + + L +ALA+
Sbjct: 389 KGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 425
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 89/197 (45%), Gaps = 32/197 (16%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
++ K++ +L + + ++I D +E L+D+ G+ V ++ D SG+SKG
Sbjct: 230 KNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 288
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRC--------------SMSETNNR------- 185
F FV+F S E AK+A++E+ +D G+ I M E R
Sbjct: 289 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 348
Query: 186 ---LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADY 242
L+I N+ + +++ R G +I +K Q +++GF + + + +
Sbjct: 349 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF---SSPED 401
Query: 243 SRQKMTSANFKLDGNTP 259
+ + MT N ++ G+ P
Sbjct: 402 ATKAMTEMNGRILGSKP 418
>gi|357122936|ref|XP_003563169.1| PREDICTED: uncharacterized protein LOC100842213 [Brachypodium
distachyon]
Length = 691
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 127/263 (48%), Gaps = 12/263 (4%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGE-SKGFAFVAFRSKEVAKRAID 163
EVF+ GLP +A EE++ GEV EV LV+D + +KGFAFV F A+ A D
Sbjct: 111 EVFVFGLPPEAVEENVAGALAEAGEVEEVRLVRDPAEPQLNKGFAFVRFAEVWQARWAAD 170
Query: 164 ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQA 222
+L + KGK + N L + N+ W++ + + ++ ++ I LI+ P
Sbjct: 171 DLRTAKIKGKACGICKNNDNETLHLRNICFDWSKDDLAENLKTFELENLEDINLIEHPDR 230
Query: 223 PSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVK 281
+NRG+AF+ + ++ A K+ + L + +S++ S D +VK
Sbjct: 231 KGKNRGYAFLDFSSHVDAVAGFLKLQKRDLYLGTDIKAQISFSNTISQDD---KVMEKVK 287
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPG--KSGKRDFGFIHYAERSSALKAIKD 339
++++ LP + ++E F + GE+ + + ++DFGFI + R +A+ I
Sbjct: 288 SVFLDGLPPHWDEDDVREKFGKFGEIDNIQLARNMFTAKRKDFGFISFTTRQAAIDCIDM 347
Query: 340 TEKYEI---DGQV-LEVALARPQ 358
K G+V ++ L RP+
Sbjct: 348 VNKGRFGEGSGKVRMKATLQRPK 370
>gi|321465036|gb|EFX76040.1| hypothetical protein DAPPUDRAFT_32249 [Daphnia pulex]
Length = 225
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 107/240 (44%), Gaps = 15/240 (6%)
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
F G + +D ED+ L E G ++ + LV D S S+GF +V F + E +ID L
Sbjct: 1 FFGNVLRDVMLEDIIPLFEDCGSIWSLRLVMDPLSTLSRGFGYVNFTTMEAVAVSIDLLN 60
Query: 167 SKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRN 226
K + N L+IGN+PKS + + + V G+ +
Sbjct: 61 GLILKETGAMQVNANVPNCLYIGNIPKSKDKDDIKTEFSIVSGGILNVI----SAETKLI 116
Query: 227 RGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVK 286
GF V Y + A +++Q++ + K+ G+ V WA+P H +K L+V
Sbjct: 117 WGFCLVEYDSIQSAAFAKQQLNNGTIKVFGSDIIVDWADPNEAKKHKI-----IKVLHVG 171
Query: 287 NLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEID 346
+ + ++ +++KELF HG + V D+ F+H R A KA++D +D
Sbjct: 172 IISKRSSMERIKELFGEHGPIQLV------EKFADYAFVHCENRDDAAKAVEDLNDRTVD 225
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 134/273 (49%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E+ L +G V + + +D+ + S G+A+V F A++A+D
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK+IR S+ + L FI N+ KS K + G + + +
Sbjct: 128 TMNFDMIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-K 186
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D Q ++G+AFV + N + AD + ++M K V K+ D A
Sbjct: 187 VMSDDQG---SKGYAFVHFQNQSAADRAIEEMNGKLLK----GCKVFVGRFKNRKDREAE 239
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
+ AS+ +Y+KN + ++LK++F ++G+ V SGK + FGF+ +
Sbjct: 240 LRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 299
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A KA+++ +I+GQ++ V A+ + ++ E
Sbjct: 300 AAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 332
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 118/277 (42%), Gaps = 34/277 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L + G++ ++ D D G SKG+AFV F+++ A RAI+E+
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEM 215
Query: 166 CSKDFKGKTI---------------RCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K KG + R SE N ++I N ++ + V G
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-IYIKNFGGDMDDERLKDVFSKYGKT 274
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ +++++ D S+ GF FV + ++ A + ++M + ++G V A+ K
Sbjct: 275 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 329
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK 319
Q LY+KNL + ++L+ F G +++V +
Sbjct: 330 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 389
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FG I ++ A KA+ + + + L +ALA+
Sbjct: 390 KGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 89/197 (45%), Gaps = 32/197 (16%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
++ K++ +L + + ++I D +E L+D+ G+ V ++ D SG+SKG
Sbjct: 231 KNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 289
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRC--------------SMSETNNR------- 185
F FV+F S E AK+A++E+ +D G+ I M E R
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 349
Query: 186 ---LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADY 242
L+I N+ + +++ R G +I +K Q +++GF + + + +
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF---SSPED 402
Query: 243 SRQKMTSANFKLDGNTP 259
+ + MT N ++ G+ P
Sbjct: 403 ATKAMTEMNGRILGSKP 419
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 134/273 (49%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E+ L +G V + + +D+ + S G+A+V F A++A+D
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK+IR S+ + L FI N+ KS K + G + + +
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-K 186
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D Q ++G+AFV + N + AD + ++M K V K+ D A
Sbjct: 187 VMSDDQG---SKGYAFVHFQNQSAADRAIEEMNGKLLK----GCKVFVGRFKNRKDREAE 239
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
+ AS+ +Y+KN + ++LK++F ++G+ V SGK + FGF+ +
Sbjct: 240 LRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 299
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A KA+++ +I+GQ++ V A+ + ++ E
Sbjct: 300 AAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 332
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 118/277 (42%), Gaps = 34/277 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L + G++ ++ D D G SKG+AFV F+++ A RAI+E+
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEM 215
Query: 166 CSKDFKGKTI---------------RCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K KG + R SE N ++I N ++ + V G
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-IYIKNFGGDMDDERLKDVFSKYGKT 274
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ +++++ D S+ GF FV + ++ A + ++M + ++G V A+ K
Sbjct: 275 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 329
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK 319
Q LY+KNL + ++L+ F G +++V +
Sbjct: 330 QAELKQMFEQLKRERICGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 389
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FG I ++ A KA+ + + + L +ALA+
Sbjct: 390 KGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 89/197 (45%), Gaps = 32/197 (16%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
++ K++ +L + + ++I D +E L+D+ G+ V ++ D SG+SKG
Sbjct: 231 KNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 289
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRC--------------SMSETNNR------- 185
F FV+F S E AK+A++E+ +D G+ I M E R
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERICGCQ 349
Query: 186 ---LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADY 242
L+I N+ + +++ R G +I +K Q +++GF + + + +
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF---SSPED 402
Query: 243 SRQKMTSANFKLDGNTP 259
+ + MT N ++ G+ P
Sbjct: 403 ATKAMTEMNGRILGSKP 419
>gi|440800287|gb|ELR21326.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 500
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 124/257 (48%), Gaps = 15/257 (5%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PP +F+ + + ++++L+D G+V + +VK+K +GE+KGF FV F + +
Sbjct: 49 PPLEYGIFVSDIARGVTDQELKDAFSSAGQVTDALVVKNKFTGETKGFGFVKFATLDAVH 108
Query: 160 RAIDELCSKDFKG------KTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
A+D F+ +T++ ++ N L++GN+P+ +E + R +++ +
Sbjct: 109 AALDMAVLPSFRDAVSARVQTVKVVRADPKNVLYVGNIPRGLSEDDVRLALQEATTTYEV 168
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHS 273
+ ++G+ + + ++ CA + + S + G V AEP++ +
Sbjct: 169 TKFKLCTTLEGESKGYGWATFKDHKCAVQGMRLLQST--PVFGLYLNVHMAEPRTQEEDM 226
Query: 274 AAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFG--FIHYAERS 331
A +VK+L+V+ + T + +K F E KVV P + + G F+H+A R
Sbjct: 227 LA---RVKSLFVRGVSPTTNAEAMKAFFGDGCE--KVVIPLDVTTRAVLGHAFVHFATRQ 281
Query: 332 SALKAIKDTEKYEIDGQ 348
A A++ + ++G+
Sbjct: 282 QAEAAMQRCQNATLEGE 298
>gi|357603823|gb|EHJ63934.1| hypothetical protein KGM_17340 [Danaus plexippus]
Length = 438
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 111/220 (50%), Gaps = 11/220 (5%)
Query: 141 SGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKT-IRCSMSETNNRLFIGNVPKSWTEKE 199
SG ++G+AFV + + A A+ +L + + + I S N RLF+GN+PK+ T+++
Sbjct: 8 SGSNRGYAFVMYTERAEATAAVKQLNGYEIRPRRHIGVVKSVDNCRLFVGNIPKTKTKED 67
Query: 200 FRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTP 259
R+ + + + L K+ NRGFAFV + + A +R+ + +L
Sbjct: 68 VREELSKRVSDIVDVILYKNCFDRKLNRGFAFVEFTCHRAAAMARRALVPGCVRLWDQEV 127
Query: 260 TVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQR--HGEVTKVVTPPGKS 317
V WAEP+ PD +VK LYV+N TT ++++F+ + +V +V
Sbjct: 128 MVDWAEPE--PDIDDEQMQRVKVLYVRNFEIRTTPDVIQKVFESTINHKVERV------K 179
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357
D+ FIH+ ER A AI + +IDG +E+ A+P
Sbjct: 180 KIYDYAFIHFYEREHAELAIAKLQNADIDGSNIEIRWAKP 219
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 27/180 (15%)
Query: 103 GSEVFIGGLPKDASEEDLR-DLCEPIGEVFEVGLVKDK-DSGESKGFAFVAFRSKEVAKR 160
+F+G +PK ++ED+R +L + + ++ +V L K+ D ++GFAFV F A
Sbjct: 51 NCRLFVGNIPKTKTKEDVREELSKRVSDIVDVILYKNCFDRKLNRGFAFVEFTCHRAAAM 110
Query: 161 AIDEL---CSKDFKGKT----------IRCSMSETNNRLFIGNVPKSWTEKEFRKVIED- 206
A L C + + + I + L++ N T +KV E
Sbjct: 111 ARRALVPGCVRLWDQEVMVDWAEPEPDIDDEQMQRVKVLYVRNFEIRTTPDVIQKVFEST 170
Query: 207 VGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEP 266
+ V+ ++ I D +AF+ +Y A+ + K+ +A+ +DG+ + WA+P
Sbjct: 171 INHKVERVKKIYD---------YAFIHFYEREHAELAIAKLQNAD--IDGSNIEIRWAKP 219
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 127/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F A+RA+D
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQDAADRAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN + +QLKE+F+++G+ V SGK R FGF+ + +
Sbjct: 183 LGAKAKEFTNVYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTDSSGKSRGFGFVSFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ E++G+ + V A+ + ++ E
Sbjct: 243 DANKAVEEINGTELNGKTVFVGRAQKKMERQAE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 128/279 (45%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F +++ A RAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKM 158
Query: 166 C------SKDFKGKT---------IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K F G+ + E N ++I N +++ +++ E G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGDEMEDEQLKEMFEKYGKT 217
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ +++++ D + ++RGF FV + + A+ + +++ +L+G T V A+ K
Sbjct: 218 L-SVKVMTD--SSGKSRGFGFVSFEKHEDANKAVEEINGT--ELNGKTVFVGRAQKKMER 272
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q LY+KNL + ++L++ F G +T KV+ G+S
Sbjct: 273 QAELKRKFELLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 115/278 (41%), Gaps = 46/278 (16%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T+DA + ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I + +E L+++ E G+ V ++ D SG+S+GF FV+F E A +A++E+
Sbjct: 194 YIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTD-SSGKSRGFGFVSFEKHEDANKAVEEIN 252
Query: 167 SKDFKGKTI-------------------------RCSMSETNNRLFIGNVPKSWTEKEFR 201
+ GKT+ R S + N L+I N+ + +++ R
Sbjct: 253 GTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQGVN-LYIKNLDDTIDDEKLR 311
Query: 202 KVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT- 260
K G +++D R++GF FV + + + + + +T N ++ G+ P
Sbjct: 312 KEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPEEATKAVTEMNGRIVGSKPLY 364
Query: 261 VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
V+ A+ K + ++ +P N Q +
Sbjct: 365 VALAQRKEERKAHLTNQYMQRIAGMRAMPPNAIINQFQ 402
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 135/273 (49%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E+ L +G V + + +D+ + S G+A+V F A++A+D
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADAQKALD 69
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK+IR S+ + L FI N+ KS K + G + + +
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-K 128
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D Q +G+AFV + N + AD + ++M L G V KS D A
Sbjct: 129 VMSDDQGS---KGYAFVHFQNQSAADRAIEEMNGK--LLQGCKVFV--GRFKSRKDREAE 181
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
+ AS+ +Y+KN + ++LK++F ++G+ V SGK + FGF+ +
Sbjct: 182 LRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 241
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A KA+++ +I+GQ++ VA A+ + ++ E
Sbjct: 242 AAKKAVEEMNGRDINGQLIFVARAQKKVERQAE 274
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 121/277 (43%), Gaps = 34/277 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L + G++ ++ D D G SKG+AFV F+++ A RAI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEM 157
Query: 166 CSKDFKGKTI---------------RCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K +G + R SE N ++I N ++ + V G
Sbjct: 158 NGKLLQGCKVFVGRFKSRKDREAELRSKASEFTN-VYIKNFGGDMDDERLKDVFSKYGKT 216
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ +++++ D S+ GF FV + ++ A + ++M + ++G V+ A+ K
Sbjct: 217 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVARAQKKVER 271
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK 319
QV LYVKNL + ++L+ F G +++V +
Sbjct: 272 QAELKQMFEQLKKERIRGCQVVKLYVKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 331
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FG I ++ ALKA+ + + + L +ALA+
Sbjct: 332 KGFGLICFSSPEDALKAMTEMNGRILGSKPLSIALAQ 368
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 90 KEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAF 149
K++ +L + + V+I D +E L+D+ G+ V ++ D SG+SKGF F
Sbjct: 176 KDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGF 234
Query: 150 VAFRSKEVAKRAIDELCSKDFKGKTI 175
V+F S E AK+A++E+ +D G+ I
Sbjct: 235 VSFDSHEAAKKAVEEMNGRDINGQLI 260
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 126/275 (45%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKVLYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT---PPGKSGKRDFGFIHYAE 329
A A + +Y+KN E + LKELF + G+ V P GKS + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+++ V A+ + ++ E
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKVLYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D + G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 134/273 (49%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E+ L +G V + + +D+ + S G+A+V F A++A+D
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK+IR S+ + L FI N+ KS K + G + + +
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-K 186
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D Q ++G+AFV + N + AD + ++M K V K+ D A
Sbjct: 187 VMSDDQG---SKGYAFVHFQNQSAADRAIEEMNGKLLK----GCKVFVGRFKNRKDREAE 239
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
+ AS+ +Y+KN + ++LK++F ++G+ V SGK + FGF+ +
Sbjct: 240 LRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 299
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A KA+++ +I+GQ++ V A+ + ++ E
Sbjct: 300 AAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 332
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 118/277 (42%), Gaps = 34/277 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L + G++ ++ D D G SKG+AFV F+++ A RAI+E+
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEM 215
Query: 166 CSKDFKGKTI---------------RCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K KG + R SE N ++I N ++ + V G
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-IYIKNFGGDMDDERLKDVFSKYGKT 274
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ +++++ D S+ GF FV + ++ A + ++M + ++G V A+ K
Sbjct: 275 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 329
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK 319
Q LY+KNL + ++L+ F G +++V +
Sbjct: 330 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 389
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FG I ++ A KA+ + + + L +ALA+
Sbjct: 390 KGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 89/197 (45%), Gaps = 32/197 (16%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
++ K++ +L + + ++I D +E L+D+ G+ V ++ D SG+SKG
Sbjct: 231 KNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 289
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRC--------------SMSETNNR------- 185
F FV+F S E AK+A++E+ +D G+ I M E R
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 349
Query: 186 ---LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADY 242
L+I N+ + +++ R G +I +K Q +++GF + + + +
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF---SSPED 402
Query: 243 SRQKMTSANFKLDGNTP 259
+ + MT N ++ G+ P
Sbjct: 403 ATKAMTEMNGRILGSKP 419
>gi|326501766|dbj|BAK02672.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 682
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 128/263 (48%), Gaps = 12/263 (4%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGE-SKGFAFVAFRSKEVAKRAID 163
EVF+ GLP++A E+D+ GEV EV LV+D + +KGFAF F A+ A +
Sbjct: 103 EVFVFGLPREAMEDDVAAALTEAGEVEEVRLVRDPAQPQLNKGFAFARFAEVWQARWAAN 162
Query: 164 ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG-PGVDTIELIKDPQA 222
+L + KGK + N L + N+ W++++ + ++ ++ I LI+ P
Sbjct: 163 DLRTAMIKGKACGICKNNDNETLHLRNICFDWSKEDLAEKLKTFELENLEDINLIEHPDR 222
Query: 223 PSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT-PTVSWAEPKSTPDHSAAAASQVK 281
RNRG+AF+ + ++ A K+ + L + +S++ S D +VK
Sbjct: 223 KGRNRGYAFLDFSSHVDAVAGFLKLQKRDLFLGTDVRAQISFSNTISQDD---KVMEKVK 279
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPG--KSGKRDFGFIHYAERSSALKAIKD 339
++++ LP + ++E F + GE+ + + ++DFGFI + R +AL I
Sbjct: 280 SVFLDGLPPHWDEDDVREKFGKFGEIDNIQLARNMFTAKRKDFGFISFTTRQAALGCIDM 339
Query: 340 TEKYEI---DGQV-LEVALARPQ 358
K G++ ++ L RP+
Sbjct: 340 VNKGRFGEGSGKIRMKATLQRPK 362
>gi|291084655|ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens]
Length = 428
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 134/273 (49%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E+ L +G V + + +D+ + S G+A+V F A++A+D
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK+IR S+ + L FI N+ KS K + G + + +
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-K 186
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D Q ++G+AFV + N + AD + ++M K V K+ D A
Sbjct: 187 VMSDDQG---SKGYAFVHFQNQSAADRAIEEMNGKLLK----GCKVFVGRFKNRKDREAE 239
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
+ AS+ +Y+KN + ++LK++F ++G+ V SGK + FGF+ +
Sbjct: 240 LRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 299
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A KA+++ +I+GQ++ V A+ + ++ E
Sbjct: 300 AAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 332
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 118/277 (42%), Gaps = 34/277 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L + G++ ++ D D G SKG+AFV F+++ A RAI+E+
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEM 215
Query: 166 CSKDFKGKTI---------------RCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K KG + R SE N ++I N ++ + V G
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-VYIKNFGGDMDDERLKDVFSKYGKT 274
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ +++++ D S+ GF FV + ++ A + ++M + ++G V A+ K
Sbjct: 275 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 329
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK 319
Q LY+KNL + ++L+ F G +++V +
Sbjct: 330 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 389
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FG I ++ A KA+ + + + L +ALA+
Sbjct: 390 KGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 89/197 (45%), Gaps = 32/197 (16%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
++ K++ +L + + V+I D +E L+D+ G+ V ++ D SG+SKG
Sbjct: 231 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 289
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRC--------------SMSETNNR------- 185
F FV+F S E AK+A++E+ +D G+ I M E R
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 349
Query: 186 ---LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADY 242
L+I N+ + +++ R G +I +K Q +++GF + + + +
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF---SSPED 402
Query: 243 SRQKMTSANFKLDGNTP 259
+ + MT N ++ G+ P
Sbjct: 403 ATKAMTEMNGRILGSKP 419
>gi|242083906|ref|XP_002442378.1| hypothetical protein SORBIDRAFT_08g019135 [Sorghum bicolor]
gi|241943071|gb|EES16216.1| hypothetical protein SORBIDRAFT_08g019135 [Sorghum bicolor]
Length = 213
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 81/141 (57%), Gaps = 6/141 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G+EVF+GGLP+ A+E LR++ GE+ +V ++KD++ G SKG+ FV F +E A A
Sbjct: 74 GTEVFVGGLPRSATESMLREIFSSCGEIIDVRIMKDQN-GHSKGYGFVRFSKREYANTAK 132
Query: 163 DELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
+ + +GK + +S + +F GN+ K WT +EF ++I V +++L
Sbjct: 133 RQKNGIELQGKRLDVDLSMDQDTVFFGNLCKEWTSEEFEELIHKTFKDVVSVDLAMASNR 192
Query: 223 PSR-----NRGFAFVLYYNNA 238
S NRGFAFV + ++A
Sbjct: 193 GSSNKRNINRGFAFVRFTSHA 213
Score = 41.6 bits (96), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 261 VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-K 319
V A P+ D ++ ++V LP + T L+E+F GE+ V ++G
Sbjct: 55 VKMAPPRGGYDEQDPRTARGTEVFVGGLPRSATESMLREIFSSCGEIIDVRIMKDQNGHS 114
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358
+ +GF+ +++R A A + E+ G+ L+V L+ Q
Sbjct: 115 KGYGFVRFSKREYANTAKRQKNGIELQGKRLDVDLSMDQ 153
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 133/275 (48%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQDAADRAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEV--TKVVT-PPGKSGKRDFGFIHYAE 329
A A + +Y+KN ++ ++LKELF ++G+ KV+T P GKS + FGF+ + +
Sbjct: 183 LGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKS--KGFGFVSFEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ +I+G+++ V A+ + ++ E
Sbjct: 241 HEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAE 275
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 115/278 (41%), Gaps = 46/278 (16%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T+DA + ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I D +E L++L G+ V ++ D +G+SKGF FV+F E A +A++E+
Sbjct: 194 YIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 167 SKDFKGKTI-------------------------RCSMSETNNRLFIGNVPKSWTEKEFR 201
KD GK + R S + N L+I N+ + +++ R
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVN-LYIKNLDDTIDDEKLR 311
Query: 202 KVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT- 260
K G +++D R++GF FV + + + + + +T N ++ G+ P
Sbjct: 312 KEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPEEATKAVTEMNGRIVGSKPLY 364
Query: 261 VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
V+ A+ K + ++ LP NT Q +
Sbjct: 365 VALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQ 402
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F +++ A RAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G +D
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGDDMDDER 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
+++++ DP +++GF FV + + A+ + ++M + ++G
Sbjct: 207 LKELFSKYGKTLSVKVMTDPTG--KSKGFGFVSFEKHEDANKAVEEMNGKD--INGKMVF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 133/275 (48%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQDAADRAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEV--TKVVT-PPGKSGKRDFGFIHYAE 329
A A + +Y+KN ++ ++LKELF ++G+ KV+T P GKS + FGF+ + +
Sbjct: 183 LGAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKS--KGFGFVSFEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ +I+G++L V A+ + ++ E
Sbjct: 241 HEEANKAVEEMNGKDINGKMLFVGRAQKKAERQAE 275
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F +++ A RAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G +D
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGDDMDDER 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
+++++ DP S+ GF FV + + A+ + ++M + ++G
Sbjct: 207 LKELFGKYGKTLSVKVMTDPTGKSK--GFGFVSFEKHEEANKAVEEMNGKD--INGKMLF 262
Query: 261 VSWAEPKS-----------TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K+ + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKAERQAELKRRFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 115/278 (41%), Gaps = 46/278 (16%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T+DA + ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I D +E L++L G+ V ++ D +G+SKGF FV+F E A +A++E+
Sbjct: 194 YIKNFGDDMDDERLKELFGKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHEEANKAVEEMN 252
Query: 167 SKDFKGKTI-------------------------RCSMSETNNRLFIGNVPKSWTEKEFR 201
KD GK + R S + N L+I N+ + +++ R
Sbjct: 253 GKDINGKMLFVGRAQKKAERQAELKRRFEQLKQERLSRYQGVN-LYIKNLDDTIDDEKLR 311
Query: 202 KVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT- 260
K G +++D R++GF FV + + + + + +T N ++ G+ P
Sbjct: 312 KEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPEEATKAVTEMNGRIVGSKPLY 364
Query: 261 VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
V+ A+ K + ++ LP NT Q +
Sbjct: 365 VALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQ 402
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 133/275 (48%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQDAADRAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEV--TKVVT-PPGKSGKRDFGFIHYAE 329
A A + +Y+KN ++ ++LKELF ++G+ KV+T P GKS + FGF+ + +
Sbjct: 183 LGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKS--KGFGFVSFEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ +I+G+++ V A+ + ++ E
Sbjct: 241 HEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAE 275
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 115/278 (41%), Gaps = 46/278 (16%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T+DA + ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I D +E L++L G+ V ++ D +G+SKGF FV+F E A +A++E+
Sbjct: 194 YIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 167 SKDFKGKTI-------------------------RCSMSETNNRLFIGNVPKSWTEKEFR 201
KD GK + R S + N L+I N+ + +++ R
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSRYQGVN-LYIKNLDDTIDDEKLR 311
Query: 202 KVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT- 260
K G +++D R++GF FV + + + + + +T N ++ G+ P
Sbjct: 312 KEFSPFGAITSAKVMLED----GRSKGFGFVCF---SSPEEATKAVTEMNGRIVGSKPLY 364
Query: 261 VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
V+ A+ K + ++ LP NT Q +
Sbjct: 365 VALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQ 402
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F +++ A RAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G +D
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGDDMDDER 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
+++++ DP +++GF FV + + A+ + ++M + ++G
Sbjct: 207 LKELFSKYGKTLSVKVMTDPTG--KSKGFGFVSFEKHEDANKAVEEMNGKD--INGKMVF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGAITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 131/275 (47%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F A+RA+D
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQDAADRAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEV--TKVVT-PPGKSGKRDFGFIHYAE 329
A A + +Y+KN ++ ++LKE+F ++G+ KV+T P GKS R FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDPSGKS--RGFGFVSYEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ E++G+ + V A+ + ++ E
Sbjct: 241 HEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAE 275
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 126/279 (45%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F +++ A RAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKM 158
Query: 166 C------SKDFKGKT---------IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K F G+ + E N ++I N ++ +++ + G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGDDMDDERLKEIFDKYGKT 217
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ +++++ DP SR GF FV Y + A+ + ++M +L+G T V A+ K
Sbjct: 218 L-SVKVMTDPSGKSR--GFGFVSYEKHEDANKAVEEMNGT--ELNGKTVFVGRAQKKMER 272
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q LY+KNL + ++L++ F G +T KV+ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 115/278 (41%), Gaps = 46/278 (16%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T+DA + ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I D +E L+++ + G+ V ++ D SG+S+GF FV++ E A +A++E+
Sbjct: 194 YIKNFGDDMDDERLKEIFDKYGKTLSVKVMTD-PSGKSRGFGFVSYEKHEDANKAVEEMN 252
Query: 167 SKDFKGKTI-------------------------RCSMSETNNRLFIGNVPKSWTEKEFR 201
+ GKT+ R S + N L+I N+ + +++ R
Sbjct: 253 GTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVN-LYIKNLDDTIDDEKLR 311
Query: 202 KVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT- 260
K G ++++ R++GF FV + + + + + +T N ++ G+ P
Sbjct: 312 KEFSPFGSITSAKVMLEE----GRSKGFGFVCF---SSPEEATKAVTEMNGRIVGSKPLY 364
Query: 261 VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
V+ A+ K + ++ +P N Q +
Sbjct: 365 VALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQ 402
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 133/275 (48%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQDAADRAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEV--TKVVT-PPGKSGKRDFGFIHYAE 329
A A + +Y+KN ++ ++LKELF ++G+ KV+T P GKS + FGF+ + +
Sbjct: 183 LGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPSGKS--KGFGFVSFEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A +A++D +I+G+++ V A+ + ++ E
Sbjct: 241 HEDANQAVEDMNGKDINGKMVFVGRAQKKVERQAE 275
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 126/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F +++ A RAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G +D
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGDDMDDER 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
+++++ DP +++GF FV + + A+ + + M + ++G
Sbjct: 207 LKELFSKYGKTLSVKVMTDPSG--KSKGFGFVSFEKHEDANQAVEDMNGKD--INGKMVF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEEGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 115/278 (41%), Gaps = 46/278 (16%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T+DA + ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I D +E L++L G+ V ++ D SG+SKGF FV+F E A +A++++
Sbjct: 194 YIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-PSGKSKGFGFVSFEKHEDANQAVEDMN 252
Query: 167 SKDFKGKTI-------------------------RCSMSETNNRLFIGNVPKSWTEKEFR 201
KD GK + R S + N L+I N+ + +++ R
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN-LYIKNLDDTIDDEKLR 311
Query: 202 KVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT- 260
K G ++++ R++GF FV + + + + + +T N ++ G+ P
Sbjct: 312 KEFSPFGSITSAKVMLEE----GRSKGFGFVCF---SSPEEATKAVTEMNGRIVGSKPLY 364
Query: 261 VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
V+ A+ K + ++ LP NT Q +
Sbjct: 365 VALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQ 402
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 9/133 (6%)
Query: 52 DAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQL---LALPPHGSEVFI 108
DA + ED NG IN + ++ + K K +QL G ++I
Sbjct: 243 DANQAVEDM----NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 109 GGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSK 168
L +E LR P G + ++ ++ G SKGF FV F S E A +A+ E+ +
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 169 DFKGKTIRCSMSE 181
K + ++++
Sbjct: 357 IVGSKPLYVALAQ 369
>gi|401827787|ref|XP_003888186.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
gi|392999386|gb|AFM99205.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
Length = 500
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 113/239 (47%), Gaps = 13/239 (5%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+++G LP + DL + +G++ + L+K +S S FAFV F ++E A++A+ E
Sbjct: 16 IYVGDLPPKTIDSDLFRIFSNVGKILNIKLIKRGESAPS--FAFVTFENEEDAEKAVREY 73
Query: 166 CSKDFKGKTIRCSMS-----ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDP 220
+ + IR ET N +F+ N+P+S+T K+ G V + ++ P
Sbjct: 74 KHYELHDRQIRVMRKDERPPETGN-IFVKNLPESFTSKDLDDAFSMFGEIV-SCKVATTP 131
Query: 221 QAPSRNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAEPKSTPDHSAAAASQ 279
Q S+ G+ FV + A + + N L GN V P+ S ++
Sbjct: 132 QGKSK--GYGFVQFKEKRSAKKVIKNFNNLNGLMLGGNKIVVELYNPEMKKGESKKVSTM 189
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAI 337
++KN P + K+L +L +++G+VT + P GK + F F ++ SAL AI
Sbjct: 190 FTNCFIKNFPGSVGEKELLDLLEKYGKVTSLCFPTKDDGKPKGFAFANFETHESALNAI 248
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 138/343 (40%), Gaps = 48/343 (13%)
Query: 77 DEDKRTASISEDEKEKHDQLLAL------PPHGSEVFIGGLPKDASEEDLRDLCEPIGEV 130
+ED A E HD+ + + PP +F+ LP+ + +DL D GE+
Sbjct: 63 EEDAEKAVREYKHYELHDRQIRVMRKDERPPETGNIFVKNLPESFTSKDLDDAFSMFGEI 122
Query: 131 FEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID-----------------ELCSKDFK-G 172
V G+SKG+ FV F+ K AK+ I EL + + K G
Sbjct: 123 VSCK-VATTPQGKSKGYGFVQFKEKRSAKKVIKNFNNLNGLMLGGNKIVVELYNPEMKKG 181
Query: 173 KTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFV 232
++ + S TN FI N P S EKE ++E G KD P +GFAF
Sbjct: 182 ESKKVSTMFTN--CFIKNFPGSVGEKELLDLLEKYGKVTSLCFPTKDDGKP---KGFAFA 236
Query: 233 LYYNNACADYSRQKMTSANFKLD----GNTPTV----------SWAEPKSTPDHSAAAAS 278
+ + A + + F D G P + K S +
Sbjct: 237 NFETHESALNAINGL-HGTFPFDNGKDGGEPFYIQKGQKREERAEVLRKMFEQLSMQGQN 295
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGKRDFGFIHYAERSSALKAI 337
K LY+ N+PE ++L +F+ G +T + V G + ++ + +I Y+ A A+
Sbjct: 296 YKKNLYITNIPEGFGAEELSNIFKEFGSITSMSVGVDGANNQKQYAYICYSTPEEASIAV 355
Query: 338 KDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPH 380
+ + +DG L+VA + + + E + G P G+P+
Sbjct: 356 ERGNEIYLDGNRLQVAYFKNKLERMKEKEFG-GLGYKP-GIPY 396
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 133/273 (48%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E+ L +G V + + +D+ + S G+A+V F A++A+D
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK+IR S+ + L FI N+ KS K + G + + +
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-K 186
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D Q ++G+AFV + N + AD + ++M K V K+ D A
Sbjct: 187 VMSDDQG---SKGYAFVHFQNQSAADRAIEEMNGKLLK----GCKVFVGRFKNRKDREAE 239
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
+ AS+ +Y+KN ++LK++F ++G+ V SGK + FGF+ +
Sbjct: 240 LRSKASEFTNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 299
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A KA+++ +I+GQ++ V A+ + ++ E
Sbjct: 300 AAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 332
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 118/277 (42%), Gaps = 34/277 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L + G++ ++ D D G SKG+AFV F+++ A RAI+E+
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEM 215
Query: 166 CSKDFKGKTI---------------RCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K KG + R SE N ++I N ++ + V G
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-IYIKNFGGEMDDERLKDVFSKYGKT 274
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ +++++ D S+ GF FV + ++ A + ++M + ++G V A+ K
Sbjct: 275 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 329
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK 319
Q LY+KNL + ++L+ F G +++V +
Sbjct: 330 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 389
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FG I ++ A KA+ + + + L +ALA+
Sbjct: 390 KGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 89/197 (45%), Gaps = 32/197 (16%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
++ K++ +L + + ++I + +E L+D+ G+ V ++ D SG+SKG
Sbjct: 231 KNRKDREAELRSKASEFTNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 289
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRC--------------SMSETNNR------- 185
F FV+F S E AK+A++E+ +D G+ I M E R
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 349
Query: 186 ---LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADY 242
L+I N+ + +++ R G +I +K Q +++GF + + + +
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF---SSPED 402
Query: 243 SRQKMTSANFKLDGNTP 259
+ + MT N ++ G+ P
Sbjct: 403 ATKAMTEMNGRILGSKP 419
>gi|444728034|gb|ELW68498.1| Heterogeneous nuclear ribonucleoprotein R [Tupaia chinensis]
Length = 160
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 78/140 (55%), Gaps = 1/140 (0%)
Query: 138 DKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWT 196
D SG+++G+AF+ F KE A+ A+ S + + GK + +S NNRLF+G++PK+ T
Sbjct: 3 DPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKT 62
Query: 197 EKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG 256
++ + V G+ + L P +NRGF F+ Y ++ A +R+++ S K+ G
Sbjct: 63 KENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG 122
Query: 257 NTPTVSWAEPKSTPDHSAAA 276
N TV WA+P PD A
Sbjct: 123 NVVTVEWADPVEEPDPEVMA 142
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 129/273 (47%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQDAADRAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN ++ ++LKELF ++G+ V SGK + FGF+ + +
Sbjct: 183 LGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDSSGKSKGFGFVSFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ +I+G+++ V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKDINGKMVFVGRAQKKVERQAE 275
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 115/278 (41%), Gaps = 46/278 (16%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T+DA + ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I D +E L++L G+ V ++ D SG+SKGF FV+F E A +A++E+
Sbjct: 194 YIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-SSGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 167 SKDFKGKTI-------------------------RCSMSETNNRLFIGNVPKSWTEKEFR 201
KD GK + R S + N L+I N+ + +++ R
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN-LYIKNLDDTIDDEKLR 311
Query: 202 KVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT- 260
K G +++D R++GF FV + + D + + +T N ++ G+ P
Sbjct: 312 KEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPDEATKAVTEMNGRIVGSKPLY 364
Query: 261 VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
V+ A+ K + ++ LP NT Q +
Sbjct: 365 VALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQ 402
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F +++ A RAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G +D
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGDDMDDER 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
+++++ D + +++GF FV + + A+ + ++M + ++G
Sbjct: 207 LKELFSKYGKTLSVKVMTD--SSGKSKGFGFVSFEKHEDANKAVEEMNGKD--INGKMVF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 116/256 (45%), Gaps = 21/256 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
S +++G L + +E L +L + +V + + +D+ +S G+A+V F S + A A++
Sbjct: 35 SSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAME 94
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L GK IR +S + +FI N+ S K R G V + +
Sbjct: 95 HLNFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLSIDNKALRDTFAAFGT-VLSCK 153
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D S+ G+ FV + + A+ S +K+ N V + A
Sbjct: 154 VAVDSNGQSK--GYGFVQFESEESAEISIEKLNGMLL----NDKQVYVGHFIRHQERIRA 207
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
SQ +YVKNLPE TT LK LF HG +T + +GK + FGF+++ SA
Sbjct: 208 NGSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAA 267
Query: 335 KAIKDTEKYEIDGQVL 350
A++ ++DG VL
Sbjct: 268 AAVE-----KLDGTVL 278
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 91/370 (24%), Positives = 154/370 (41%), Gaps = 42/370 (11%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ VFI L + LRD G V + D + G+SKG+ FV F S+E A+ +I+
Sbjct: 123 ANVFIKNLDLSIDNKALRDTFAAFGTVLSCKVAVDSN-GQSKGYGFVQFESEESAEISIE 181
Query: 164 ELCSKDFKGKT------------IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
+L K IR + S+ N +++ N+P++ T+ + + + G
Sbjct: 182 KLNGMLLNDKQVYVGHFIRHQERIRANGSQFTN-VYVKNLPETTTDDDLKNLFAPHGTIT 240
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
I + + +++ F FV + N A + +K+ D T V A+ K+ +
Sbjct: 241 SAIVMT---DSNGKSKCFGFVNFQNTDSAAAAVEKLDGTVLG-DDKTLYVGRAQRKAERE 296
Query: 272 HSAAAAS-----------QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-K 319
A Q LY+KNL ++ ++LKELF +G +T + G
Sbjct: 297 AELRAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLS 356
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNK--RTEGVYS---CAAGVH 374
+ GF+ ++ A KA+ + + L VA+A+ + + R + ++ A G+
Sbjct: 357 KGSGFVAFSSPDEATKALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRAAGGIS 416
Query: 375 --PSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMH-MVPMVLPDG 431
PSG+P G G A S GL P G G P M M P + P+
Sbjct: 417 SLPSGIP----GFHPGAARVSPQQMYYGQGNPGLAPPQPAGYGFQPQLMSGMRPGMGPNF 472
Query: 432 RIGYVLQQPG 441
+ Y Q+ G
Sbjct: 473 LMPYQFQRQG 482
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 123/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 28 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 87
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 88 TMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 146
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 147 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 199
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E LKELF + G+ V SGK + FGF+ Y +
Sbjct: 200 LGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHE 259
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ E+ G+ + V A+ + ++ E
Sbjct: 260 DANKAVEEMNGKEMSGKAIFVGRAQKKVERQAE 292
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 126/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 118 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 175
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 176 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDGN 223
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++D + +++GF FV Y + A+ + ++M ++ G
Sbjct: 224 LKELFSQFGKTLSVKVMRD--SSGKSKGFGFVSYEKHEDANKAVEEMNGK--EMSGKAIF 279
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L+ F G +T
Sbjct: 280 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITS 339
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 340 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 386
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 95/207 (45%), Gaps = 35/207 (16%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ + +L++L G+ V +++D SG+SKG
Sbjct: 191 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKG 249
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 250 FGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 309
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ R+ G +++D R++GF FV + + +
Sbjct: 310 GVN-LYIKNLDDTIDDEKLRREFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 361
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPK 267
+ + +T N ++ G+ P V+ A+ K
Sbjct: 362 EATKAVTEMNGRIVGSKPLYVALAQRK 388
>gi|259515737|sp|P0CB38.1|PAB4L_HUMAN RecName: Full=Polyadenylate-binding protein 4-like;
Short=PABP-4-like; Short=Poly(A)-binding protein 4-like
Length = 370
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 135/280 (48%), Gaps = 20/280 (7%)
Query: 97 LALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
+A + +++G L D +E+ L +G V + + +D+ + S G+A+V F
Sbjct: 3 VAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLA 62
Query: 157 VAKRAIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVG 208
A++A+D + KGK+IR S+ + L FI N+ KS K + G
Sbjct: 63 DAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFG 122
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
+ + +++ D Q +G+AFV + N + AD + ++M K V K+
Sbjct: 123 KILSS-KVMSDDQGS---KGYAFVHFQNQSAADRAIEEMNGKLLK----GCKVFVGRFKN 174
Query: 269 TPDHSA---AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGF 324
D A + AS+ +Y+KN + ++LK++F ++G+ V SGK + FGF
Sbjct: 175 RKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGF 234
Query: 325 IHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ + +A KA+++ +I+GQ++ V A+ + ++ E
Sbjct: 235 VSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 274
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 118/277 (42%), Gaps = 34/277 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L + G++ ++ D D G SKG+AFV F+++ A RAI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEM 157
Query: 166 CSKDFKG---------------KTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K KG +R SE N ++I N ++ + V G
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-VYIKNFGGDMDDERLKDVFSKYGKT 216
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ +++++ D S+ GF FV + ++ A + ++M + ++G V A+ K
Sbjct: 217 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 271
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK 319
Q LY+KNL + ++L+ F G +++V +
Sbjct: 272 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 331
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FG I ++ A KA+ + + + L +ALA+
Sbjct: 332 KGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 368
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 89/197 (45%), Gaps = 32/197 (16%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
++ K++ +L + + V+I D +E L+D+ G+ V ++ D SG+SKG
Sbjct: 173 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 231
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRC--------------SMSETNNR------- 185
F FV+F S E AK+A++E+ +D G+ I M E R
Sbjct: 232 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 291
Query: 186 ---LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADY 242
L+I N+ + +++ R G +I +K Q +++GF + + + +
Sbjct: 292 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF---SSPED 344
Query: 243 SRQKMTSANFKLDGNTP 259
+ + MT N ++ G+ P
Sbjct: 345 ATKAMTEMNGRILGSKP 361
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 116/256 (45%), Gaps = 21/256 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
S +++G L + +E L +L + +V + + +D+ +S G+A+V F S + A A++
Sbjct: 35 SSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAME 94
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L GK IR +S + +FI N+ S K R G V + +
Sbjct: 95 HLNFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLSIDNKALRDTFAAFGT-VLSCK 153
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D S+ G+ FV + + A+ S +K+ N V + A
Sbjct: 154 VAVDSNGQSK--GYGFVQFESEESAEISIEKLNGMLL----NDKQVYVGHFIRHQERIRA 207
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
SQ +YVKNLPE TT LK LF HG +T + +GK + FGF+++ SA
Sbjct: 208 NGSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAA 267
Query: 335 KAIKDTEKYEIDGQVL 350
A++ ++DG VL
Sbjct: 268 AAVE-----KLDGTVL 278
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 91/370 (24%), Positives = 154/370 (41%), Gaps = 42/370 (11%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ VFI L + LRD G V + D + G+SKG+ FV F S+E A+ +I+
Sbjct: 123 ANVFIKNLDLSIDNKALRDTFAAFGTVLSCKVAVDSN-GQSKGYGFVQFESEESAEISIE 181
Query: 164 ELCSKDFKGKT------------IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
+L K IR + S+ N +++ N+P++ T+ + + + G
Sbjct: 182 KLNGMLLNDKQVYVGHFIRHQERIRANGSQFTN-VYVKNLPETTTDDDLKNLFAPHGTIT 240
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
I + + +++ F FV + N A + +K+ D T V A+ K+ +
Sbjct: 241 SAIVMT---DSNGKSKCFGFVNFQNTDSAAAAVEKLDGTVLG-DDKTLYVGRAQRKAERE 296
Query: 272 HSAAAAS-----------QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-K 319
A Q LY+KNL ++ ++LKELF +G +T + G
Sbjct: 297 AELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLS 356
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNK--RTEGVYS---CAAGVH 374
+ GF+ ++ A KA+ + + L VA+A+ + + R + ++ A G+
Sbjct: 357 KGSGFVAFSSPDEATKALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRAAGGIS 416
Query: 375 --PSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMH-MVPMVLPDG 431
PSG+P G G A S GL P G G P M M P + P+
Sbjct: 417 SLPSGIP----GFHPGAARVSPQQMYYGQGNPGLAPPQPAGYGFQPQLMSGMRPGMGPNF 472
Query: 432 RIGYVLQQPG 441
+ Y Q+ G
Sbjct: 473 LMPYQFQRQG 482
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 123/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ E+ G+ + V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEMSGKAIFVGRAQKKVERQAE 275
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 126/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDGN 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++D + +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRD--SSGKSKGFGFVSYEKHEDANKAVEEMNGK--EMSGKAIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L+ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 95/207 (45%), Gaps = 35/207 (16%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ + +L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ R+ G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRREFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPK 267
+ + +T N ++ G+ P V+ A+ K
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 124/275 (45%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 2 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 61
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 120
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 121 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 173
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT---PPGKSGKRDFGFIHYAE 329
A A + +Y+KN E LKELF + G+ V P GKS + FGF+ Y +
Sbjct: 174 LGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEK 231
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ E+ G+ + V A+ + ++ E
Sbjct: 232 HEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAE 266
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 129/296 (43%), Gaps = 58/296 (19%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 92 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 149
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 150 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDDN 197
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP S+ GF FV Y + A+ + ++M ++ G
Sbjct: 198 LKELFSQFGKTLSVKVMRDPSGKSK--GFGFVSYEKHEDANKAVEEMNGK--EMSGKAIF 253
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 254 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 313
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRT 363
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+ + ++
Sbjct: 314 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 367
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 104/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +++L++L G+ V +++D SG+SKG
Sbjct: 165 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRD-PSGKSKG 223
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 224 FGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 283
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 284 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 335
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 336 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILSQFQ 393
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 123/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ E+ G+ + V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEMSGKAIFVGRAQKKVERQAE 275
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDGN 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++D + +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRD--SSGKSKGFGFVSYEKHEDANKAVEEMNGK--EMSGKAIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 95/207 (45%), Gaps = 35/207 (16%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ + +L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPK 267
+ + +T N ++ G+ P V+ A+ K
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|119625554|gb|EAX05149.1| hCG1647909 [Homo sapiens]
Length = 369
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 135/280 (48%), Gaps = 20/280 (7%)
Query: 97 LALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
+A + +++G L D +E+ L +G V + + +D+ + S G+A+V F
Sbjct: 3 VAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLA 62
Query: 157 VAKRAIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVG 208
A++A+D + KGK+IR S+ + L FI N+ KS K + G
Sbjct: 63 DAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFG 122
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
+ + +++ D Q +G+AFV + N + AD + ++M K V K+
Sbjct: 123 KILSS-KVMSDDQGS---KGYAFVHFQNQSAADRAIEEMNGKLLK----GCKVFVGRFKN 174
Query: 269 TPDHSA---AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGF 324
D A + AS+ +Y+KN + ++LK++F ++G+ V SGK + FGF
Sbjct: 175 RKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGF 234
Query: 325 IHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ + +A KA+++ +I+GQ++ V A+ + ++ E
Sbjct: 235 VSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 274
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 118/277 (42%), Gaps = 34/277 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L + G++ ++ D D G SKG+AFV F+++ A RAI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEM 157
Query: 166 CSKDFKG---------------KTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K KG +R SE N ++I N ++ + V G
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-VYIKNFGGDMDDERLKDVFSKYGKT 216
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ +++++ D S+ GF FV + ++ A + ++M + ++G V A+ K
Sbjct: 217 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 271
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK 319
Q LY+KNL + ++L+ F G +++V +
Sbjct: 272 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 331
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FG I ++ A KA+ + + + L +ALA+
Sbjct: 332 KGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 368
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 89/197 (45%), Gaps = 32/197 (16%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
++ K++ +L + + V+I D +E L+D+ G+ V ++ D SG+SKG
Sbjct: 173 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 231
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRC--------------SMSETNNR------- 185
F FV+F S E AK+A++E+ +D G+ I M E R
Sbjct: 232 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 291
Query: 186 ---LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADY 242
L+I N+ + +++ R G +I +K Q +++GF + + + +
Sbjct: 292 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF---SSPED 344
Query: 243 SRQKMTSANFKLDGNTP 259
+ + MT N ++ G+ P
Sbjct: 345 ATKAMTEMNGRILGSKP 361
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 114/408 (27%), Positives = 180/408 (44%), Gaps = 60/408 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + + D SG+SKGF FV F ++E A +AI++L
Sbjct: 119 IFIKNLDKAIDHKALHDTFSAFGSILSCKVATD-SSGQSKGFGFVQFDTEEAALKAIEKL 177
Query: 166 CSKDFKGKTI----------RCSMSETN--NRLFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
K + R S+SE N +F+ N+ ++ +E++ + + + GP + +
Sbjct: 178 NGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGP-ITS 236
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD-- 271
+ +++D + +++ F FV + N A S + + K+DG V A+ KS +
Sbjct: 237 VVVMRDGEG--KSKCFGFVNFENADDAARSVEALNGK--KVDGKEWYVGKAQKKSEREVE 292
Query: 272 ---------HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKR 320
AA Q LYVKNL ++ +LKELF G +T KV+ P R
Sbjct: 293 LKSRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDP-NGISR 351
Query: 321 DFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRT--EGVYS------CAAG 372
GF+ ++ A +A+ + I + L VALA+ + ++R + +S A+
Sbjct: 352 GSGFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASS 411
Query: 373 VHPSGLPH---AGYGSFAGTAYGSV-STGLGVAAGAGLQQPMIYGR--GQMPAGMHMVPM 426
V P G+P G G YG T + G G QQ ++ G G P VPM
Sbjct: 412 VAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPM 471
Query: 427 VLPDGRIGY-------VLQQPGVQMPLPPPR----PR-RVERGPGGRG 462
V + +QQ Q P+P + PR RV R P GRG
Sbjct: 472 VQQGQQGQRSGGRRAGAIQQ--TQQPVPLMQQQMLPRGRVYRYPPGRG 517
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 120/270 (44%), Gaps = 15/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L + ++ L DL +G+V V + +D S S G+ +V + + A RA+D
Sbjct: 29 TSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALD 88
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L G IR S + +FI N+ K+ K G + + +
Sbjct: 89 VLNFTPLNGNPIRVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFG-SILSCK 147
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D + +++GF FV + A + +K+ N L + + S +
Sbjct: 148 VATD--SSGQSKGFGFVQFDTEEAALKAIEKL---NGMLLNDKQVFVGPFLRKQERESVS 202
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
++ ++VKNL E T+ + LK +F G +T VV GK + FGF+++ A
Sbjct: 203 EKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAA 262
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
++++ ++DG+ V A+ ++ + E
Sbjct: 263 RSVEALNGKKVDGKEWYVGKAQKKSEREVE 292
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 126/273 (46%), Gaps = 19/273 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G++ + + +D + +S G+A+V F A+R +D
Sbjct: 12 TSLYVGDLHPDVTEALLYEKFSPAGQILSLRVCRDSRTKQSLGYAYVNFSQTIEAERVLD 71
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G +
Sbjct: 72 TMNFDLLKGKPIRIMWSQRDPSLRKSGIGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKV 131
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
I D ++G+ FV + + A+ + +K+ L+G V P++ +
Sbjct: 132 AIDDDGV---SKGYGFVHFESIEAANKAIEKVNG--MLLNGKKVYVGKFIPRAEREKEIG 186
Query: 276 AAS-QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT---PPGKSGKRDFGFIHYAERS 331
S + +YVKN N T +QL +LF+ +G +T V P G S + FGFI + E
Sbjct: 187 EKSKKYTNVYVKNFGRNLTQEQLYDLFKNYGTITSCVVMANPDGTS--KGFGFIAFEEPE 244
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA KA+ + YE++G L V A+ ++ + E
Sbjct: 245 SAEKAVTEMNNYELNGTNLYVGRAQKKSERIKE 277
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 130/296 (43%), Gaps = 35/296 (11%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + + D G + + D D G SKG+ FV F S E A +AI+++
Sbjct: 102 VFIKNLDKSIDNKAMYDTFSAFGNILSCKVAID-DDGVSKGYGFVHFESIEAANKAIEKV 160
Query: 166 CSKDFKGKTIRC--------------SMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
GK + S+ +++ N ++ T+++ + ++ G +
Sbjct: 161 NGMLLNGKKVYVGKFIPRAEREKEIGEKSKKYTNVYVKNFGRNLTQEQLYDLFKNYGT-I 219
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS-TP 270
+ ++ +P S+ GF F+ + A+ + +M N++L+G V A+ KS
Sbjct: 220 TSCVVMANPDGTSK--GFGFIAFEEPESAEKAVTEMN--NYELNGTNLYVGRAQKKSERI 275
Query: 271 DHSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q+K +Y+KNL + +L++ F + G +T KV+T G+S
Sbjct: 276 KELKKCYEQMKLERYNRIQGANVYIKNLDDTFDNDRLRKEFSQFGAITSAKVMTEGGRS- 334
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVH 374
+ FGF+ ++ A KAI + + I + + VALA+ ++R C +
Sbjct: 335 -KGFGFVCFSTPEEASKAITEMDGRMIGSKPIYVALAQRYEDRRAYLSAQCMQRIR 389
>gi|355687608|gb|EHH26192.1| hypothetical protein EGK_16094 [Macaca mulatta]
gi|355749570|gb|EHH53969.1| hypothetical protein EGM_14691 [Macaca fascicularis]
Length = 370
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 135/280 (48%), Gaps = 20/280 (7%)
Query: 97 LALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
+A + +++G L D +E+ L G V + + +D+ + S G+A+V F
Sbjct: 3 VAAKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLT 62
Query: 157 VAKRAIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVG 208
A++A+D + KGK+IR S+ + L FI N+ KS K + G
Sbjct: 63 DAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFG 122
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
+ + +++ D Q +G+AFV + N + AD + ++M K + V K+
Sbjct: 123 KILSS-KVMSDDQGS---KGYAFVHFQNQSAADRAIEEMNGKLLK----SCKVFVGRFKN 174
Query: 269 TPDHSA---AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGF 324
D A + AS+ +Y+KN + ++LK++F ++G+ V SGK + FGF
Sbjct: 175 RKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGF 234
Query: 325 IHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ + +A KA+++ +I+GQ++ V A+ + ++ E
Sbjct: 235 VSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 274
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 121/278 (43%), Gaps = 34/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L + G++ ++ D D G SKG+AFV F+++ A RAI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSGFGKILSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEM 157
Query: 166 ------CSKDFKGKT---------IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K F G+ +R SE N ++I N ++ + V G
Sbjct: 158 NGKLLKSCKVFVGRFKNRKDREAELRSKASEFTN-IYIKNFGGDMDDERLKDVFSKYGKT 216
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTP 270
+ +++++ D S+ GF FV + ++ A + ++M + ++G V A+ K
Sbjct: 217 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 271
Query: 271 DHSAAAA-SQVK----------ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK 319
Q+K LYVKNL + ++L+ F G + +V +
Sbjct: 272 QAELKQMFEQLKRERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQQEGQS 331
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357
+ FGFI ++ A KA+ + + + + +ALA+
Sbjct: 332 KGFGFICFSSLEDATKAMIEMNGCFLGSKPISIALAQS 369
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
++ K++ +L + + ++I D +E L+D+ G+ V ++ D SG+SKG
Sbjct: 173 KNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 231
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRC--------------SMSETNNR------- 185
F FV+F S E AK+A++E+ +D G+ I M E R
Sbjct: 232 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQ 291
Query: 186 ---LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLY 234
L++ N+ + +++ R G +I +K Q +++GF F+ +
Sbjct: 292 GVKLYVKNLDDTIDDEKLRNEFSSFG----SIIRVKVMQQEGQSKGFGFICF 339
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 114/408 (27%), Positives = 180/408 (44%), Gaps = 60/408 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + + D SG+SKGF FV F ++E A +AI++L
Sbjct: 119 IFIKNLDKAIDHKALHDTFSAFGSILSCKVATD-SSGQSKGFGFVQFDTEEAALKAIEKL 177
Query: 166 CSKDFKGKTI----------RCSMSETN--NRLFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
K + R S+SE N +F+ N+ ++ +E++ + + + GP + +
Sbjct: 178 NGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGP-ITS 236
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD-- 271
+ +++D + +++ F FV + N A S + + K+DG V A+ KS +
Sbjct: 237 VVVMRDGEG--KSKCFGFVNFENADDAARSVEALNGK--KVDGKEWYVGKAQKKSEREVE 292
Query: 272 ---------HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKR 320
AA Q LYVKNL ++ +LKELF G +T KV+ P R
Sbjct: 293 LKSRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDP-NGISR 351
Query: 321 DFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNK--RTEGVYS------CAAG 372
GF+ ++ A +A+ + I + L VALA+ + ++ R + +S A+
Sbjct: 352 GSGFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRIARLQAQFSQMQPMAMASS 411
Query: 373 VHPSGLPH---AGYGSFAGTAYGSV-STGLGVAAGAGLQQPMIYGR--GQMPAGMHMVPM 426
V P G+P G G YG T + G G QQ ++ G G P VPM
Sbjct: 412 VAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPM 471
Query: 427 VLPDGRIGY-------VLQQPGVQMPLPPPR----PR-RVERGPGGRG 462
V + +QQ Q P+P + PR RV R P GRG
Sbjct: 472 VQQGQQGQRSGGRRAGAIQQ--TQQPVPLMQQQMLPRGRVYRYPPGRG 517
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 120/270 (44%), Gaps = 15/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L + ++ L DL +G+V V + +D S S G+ +V + + A RA+D
Sbjct: 29 TSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALD 88
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L G IR S + +FI N+ K+ K G + + +
Sbjct: 89 VLNFTPLNGNPIRVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFG-SILSCK 147
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D + +++GF FV + A + +K+ N L + + S +
Sbjct: 148 VATD--SSGQSKGFGFVQFDTEEAALKAIEKL---NGMLLNDKQVFVGPFLRKQERESVS 202
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
++ ++VKNL E T+ + LK +F G +T VV GK + FGF+++ A
Sbjct: 203 EKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAA 262
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
++++ ++DG+ V A+ ++ + E
Sbjct: 263 RSVEALNGKKVDGKEWYVGKAQKKSEREVE 292
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 131/271 (48%), Gaps = 16/271 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E+ L +G V + + +D + S G+A+V F A++A+D
Sbjct: 109 ASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALD 168
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K + G + + +
Sbjct: 169 TMNFDMIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-K 227
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D Q +RG+AFV + N AD + ++M A K D + K
Sbjct: 228 VMSDDQG---SRGYAFVHFQNQNAADRAIEEMNGALLK-DCRLFVGRFKNRKDREAELQN 283
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSA 333
++ +YVKN ++ ++LKE+F ++G+ KV+T G K FGF+ + +A
Sbjct: 284 KVNEFTNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGKSK-GFGFVSFDSHEAA 342
Query: 334 LKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+++ +++GQ+L V A+ ++ ++ E
Sbjct: 343 KKAVEEMNGKDVNGQLLFVGRAQKKSERQAE 373
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 124/283 (43%), Gaps = 35/283 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L + G++ ++ D D G S+G+AFV F+++ A RAI+E+
Sbjct: 199 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQG-SRGYAFVHFQNQNAADRAIEEM 256
Query: 166 ---CSKD-------FKGKT-----IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
KD FK + ++ ++E N +++ N ++ ++V G
Sbjct: 257 NGALLKDCRLFVGRFKNRKDREAELQNKVNEFTN-VYVKNFGDDMDDERLKEVFSKYGKT 315
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTP 270
+ +++++ D S+ GF FV + ++ A + ++M + ++G V A+ KS
Sbjct: 316 L-SVKVMTDSGGKSK--GFGFVSFDSHEAAKKAVEEMNGKD--VNGQLLFVGRAQKKSER 370
Query: 271 DHSAAAA-----------SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK 319
Q LY+KNL + ++L F G +++V +
Sbjct: 371 QAELKQMFEQLKQERFRRCQGMKLYIKNLDDTIDDEKLWREFSSFGSISRVKIMREEGRS 430
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA-RPQTNK 361
+ FG I ++ A KA+ + + + L +ALA RP K
Sbjct: 431 KGFGLICFSSPEEATKAMAEMNGRILGSKPLYIALAQRPXERK 473
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 13/105 (12%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ V++ D +E L+++ G+ V ++ D G+SKGF FV+F S E AK+A++
Sbjct: 289 TNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTD-SGGKSKGFGFVSFDSHEAAKKAVE 347
Query: 164 ELCSKDFKGKTIRCSMSETNNRLFIGNV-PKSWTEKEFRKVIEDV 207
E+ KD G+ LF+G KS + E +++ E +
Sbjct: 348 EMNGKDVNGQL-----------LFVGRAQKKSERQAELKQMFEQL 381
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 132/275 (48%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQDAADRAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEV--TKVVT-PPGKSGKRDFGFIHYAE 329
A A + +Y+KN ++ +LKELF ++G+ KV+T P GKS + FGF+ + +
Sbjct: 183 LGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKS--KGFGFVSFEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ +I+G+++ V A+ + ++ E
Sbjct: 241 HEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAE 275
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F +++ A RAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G +D
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGDDMDDGR 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
+++++ DP +++GF FV + + A+ + ++M + ++G
Sbjct: 207 LKELFSKYGKTLSVKVMTDPSG--KSKGFGFVSFEKHEDANKAVEEMNGKD--INGKMVF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 114/278 (41%), Gaps = 46/278 (16%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T+DA + ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I D + L++L G+ V ++ D SG+SKGF FV+F E A +A++E+
Sbjct: 194 YIKNFGDDMDDGRLKELFSKYGKTLSVKVMTD-PSGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 167 SKDFKGKTI-------------------------RCSMSETNNRLFIGNVPKSWTEKEFR 201
KD GK + R S + N L+I N+ + +++ R
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN-LYIKNLDDTIDDEKLR 311
Query: 202 KVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT- 260
K G +++D R++GF FV + + D + + +T N ++ G+ P
Sbjct: 312 KEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPDEATKAVTEMNGRIVGSKPLY 364
Query: 261 VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
V+ A+ K + ++ LP NT Q +
Sbjct: 365 VALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQ 402
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 134/272 (49%), Gaps = 18/272 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E+ L +G V + + +D + S G+A+V F A++A+D
Sbjct: 10 ASLYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK+IR S+ + L FI N+ +S K + G + + +
Sbjct: 70 TMNFDMIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSS-K 128
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D Q +G+AFV + N + AD + ++M K D + K
Sbjct: 129 VMSDDQGS---KGYAFVHFQNQSAADRAIEEMNGKLLK-DCKVFVGRFKNRKDREAELRN 184
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEV--TKVVT-PPGKSGKRDFGFIHYAERSS 332
AS+ +Y+KN ++ ++L+E+F ++G+ KV+T P GKS + FGF+ + +
Sbjct: 185 KASEFTNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKS--KGFGFVSFDNHEA 242
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ +I+GQ++ V A+ + ++ E
Sbjct: 243 AQKAVEEMNGKDINGQLIFVGRAQKKVERQAE 274
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 120/271 (44%), Gaps = 39/271 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + + L + G++ ++ D D G SKG+AFV F+++ A RAI+E+
Sbjct: 100 VFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEM 157
Query: 166 CSK----------DFKGKT-----IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K FK + +R SE N ++I N ++ R+V G
Sbjct: 158 NGKLLKDCKVFVGRFKNRKDREAELRNKASEFTN-VYIKNFGDDMDDERLREVFSKYGKT 216
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ +++++ DP S+ GF FV + N+ A + ++M + ++G V A+ K
Sbjct: 217 L-SVKVMTDPSGKSK--GFGFVSFDNHEAAQKAVEEMNGKD--INGQLIFVGRAQKKVER 271
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK 319
Q LY+KNL + ++L++ F G +++V +
Sbjct: 272 QAELKQMFEQQKRERIRKCQGVKLYIKNLDDTIDDEKLRKEFSSFGSISRVKVMQEEGQS 331
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVL 350
+ FG I ++ A KA+ E++GQ+L
Sbjct: 332 KGFGLICFSSPEEATKAMT-----EMNGQIL 357
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 89/197 (45%), Gaps = 32/197 (16%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
++ K++ +L + V+I D +E LR++ G+ V ++ D SG+SKG
Sbjct: 173 KNRKDREAELRNKASEFTNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDP-SGKSKG 231
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRC--------------SMSETNNR------- 185
F FV+F + E A++A++E+ KD G+ I M E R
Sbjct: 232 FGFVSFDNHEAAQKAVEEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQQKRERIRKCQ 291
Query: 186 ---LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADY 242
L+I N+ + +++ RK G +I +K Q +++GF + + + +
Sbjct: 292 GVKLYIKNLDDTIDDEKLRKEFSSFG----SISRVKVMQEEGQSKGFGLICF---SSPEE 344
Query: 243 SRQKMTSANFKLDGNTP 259
+ + MT N ++ G+ P
Sbjct: 345 ATKAMTEMNGQILGSKP 361
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 132/275 (48%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQDAADRAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEV--TKVVT-PPGKSGKRDFGFIHYAE 329
A A + +Y+KN ++ +LKELF ++G+ KV+T P GKS + FGF+ + +
Sbjct: 183 LGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKS--KGFGFVSFEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ +I+G+++ V A+ + ++ E
Sbjct: 241 HEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAE 275
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 114/278 (41%), Gaps = 46/278 (16%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T+DA + ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I D + L++L G+ V ++ D SG+SKGF FV+F E A +A++E+
Sbjct: 194 YIKNFGDDMDDGRLKELFSKYGKTLSVKVMTD-PSGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 167 SKDFKGKTI-------------------------RCSMSETNNRLFIGNVPKSWTEKEFR 201
KD GK + R S + N L+I N+ + +++ R
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN-LYIKNLDDTIDDEKLR 311
Query: 202 KVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT- 260
K G +++D R++GF FV + + D + + +T N ++ G+ P
Sbjct: 312 KEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPDEATKAVTEMNGRIVGSKPLY 364
Query: 261 VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
V+ A+ K + ++ LP NT Q +
Sbjct: 365 VALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQ 402
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F +++ A RAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G +D
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGDDMDDGR 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
+++++ DP +++GF FV + + A+ + ++M + ++G
Sbjct: 207 LKELFSKYGKTLSVKVMTDPSG--KSKGFGFVSFEKHEDANKAVEEMNGKD--INGKMVF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQ 369
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 132/275 (48%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQDAADRAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEV--TKVVT-PPGKSGKRDFGFIHYAE 329
A A + +Y+KN ++ +LKELF ++G+ KV+T P GKS + FGF+ + +
Sbjct: 183 LGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKS--KGFGFVSFEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ +I+G+++ V A+ + ++ E
Sbjct: 241 HEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAE 275
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F +++ A RAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G +D
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGDDMDDGR 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
+++++ DP +++GF FV + + A+ + ++M + ++G
Sbjct: 207 LKELFSKYGKTLSVKVMTDPSG--KSKGFGFVSFEKHEDANKAVEEMNGKD--INGKMVF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 114/278 (41%), Gaps = 46/278 (16%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T+DA + ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I D + L++L G+ V ++ D SG+SKGF FV+F E A +A++E+
Sbjct: 194 YIKNFGDDMDDGRLKELFSKYGKTLSVKVMTD-PSGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 167 SKDFKGKTI-------------------------RCSMSETNNRLFIGNVPKSWTEKEFR 201
KD GK + R S + N L+I N+ + +++ R
Sbjct: 253 GKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN-LYIKNLDDTIDDEKLR 311
Query: 202 KVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT- 260
K G +++D R++GF FV + + D + + +T N ++ G+ P
Sbjct: 312 KEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPDEATKAVTEMNGRIVGSKPLY 364
Query: 261 VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
V+ A+ K + ++ LP NT Q +
Sbjct: 365 VALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQ 402
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
S +++G L D +E L ++ PIG + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S + +FI N+ S K G + + +
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFG-SILSSK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ + +RGF FV + + A QK + + N V KS A
Sbjct: 130 VVYNEHG---SRGFGFVHFETHEAA----QKAINTMNGMLLNDRKVFVGHFKSRQKREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A +YVKNL N ++L++LF + G + V +G+ R FGF+++ +
Sbjct: 183 LGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ E+ GQ+L V A+ + +++E
Sbjct: 243 EAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSE 275
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 115/278 (41%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + +V ++ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTM 158
Query: 166 CSK----------DFKGKTIR------CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
FK + R ++ TN +++ N+ + E+ + + G
Sbjct: 159 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTN--IYVKNLHANVDEQRLQDLFSQFG- 215
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNN----ACADYSRQKMTSANFKLDGNTPTVSWAE 265
+ ++++++D SR GF FV + + D+ K S G AE
Sbjct: 216 NMQSVKVMRDSNGQSR--GFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQ--KRAE 271
Query: 266 PKSTPDHSAAAASQVKA-------LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG 318
+S Q + LYVKNL ++ ++LKE+F +G +T S
Sbjct: 272 RQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMTESSH 331
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 123/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E LKELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ E+ G+ + V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEMSGKAIFVGRAQKKVERQAE 275
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 126/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDGN 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++D + +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRD--SSGKSKGFGFVSYEKHEDANKAVEEMNGK--EMSGKAIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L+ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 95/207 (45%), Gaps = 35/207 (16%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ + +L++L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ R+ G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRREFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPK 267
+ + +T N ++ G+ P V+ A+ K
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|391331494|ref|XP_003740180.1| PREDICTED: probable RNA-binding protein 46-like [Metaseiulus
occidentalis]
Length = 357
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 133/287 (46%), Gaps = 43/287 (14%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE------ 156
E+ I +P AS L L EP G++ + L D D G S G A + ++E
Sbjct: 52 SCEIHISNIPSGASLVQLVRLFEPQGKLLRLTLFVD-DDGVSVGKATAVYENEEDAMTVE 110
Query: 157 -------VAKRAIDELCSKDF-----KGKTIRCSM------SETNNRLFIGNVPKSWTEK 198
+++R ++ S + K + +R S +E RL++ N+PK T++
Sbjct: 111 EGLNGVVLSERGPYKVVSARWGSALGKSEALRKSTEGLIVRTEMGRRLYVANIPKVKTKE 170
Query: 199 E-FRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGN 257
+ F +G VD ++ ++NRGF F+ + ++ A ++++ + ++ + G
Sbjct: 171 DIFNHFNRFLGGLVDV--MVYTYPGSTQNRGFCFIEFNSSKNAMFAKETIVAS--RPWGC 226
Query: 258 TPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHG---EVTKVVTPP 314
V WA+P+ PD + VK LY+KNL T L+ F G E KV+
Sbjct: 227 EVVVDWADPEQEPDEEIMKS--VKVLYIKNLSPRVTDADLRRAFAERGLQVERVKVI--- 281
Query: 315 GKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNK 361
RDF F+H+ RS A KA+K + +D L+V+ A+P NK
Sbjct: 282 -----RDFAFVHFFTRSLAEKAMKVCQNLTLDDLPLQVSWAKPPINK 323
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 113/253 (44%), Gaps = 35/253 (13%)
Query: 30 LDDDG-EVGRDGNVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASI--- 85
+DDDG VG+ V +N+ED A T +E G NG ++ + R S
Sbjct: 86 VDDDGVSVGKATAVYENEED----AMTVEE----GLNGVVLSERGPYKVVSARWGSALGK 137
Query: 86 SEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRD-LCEPIGEVFEVGLVKDKDSGES 144
SE ++ + L+ G +++ +PK ++ED+ + +G + +V + S ++
Sbjct: 138 SEALRKSTEGLIVRTEMGRRLYVANIPKVKTKEDIFNHFNRFLGGLVDVMVYTYPGSTQN 197
Query: 145 KGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC-----------SMSETNNRLFIGNVPK 193
+GF F+ F S + A A + + + G + + ++ L+I N+
Sbjct: 198 RGFCFIEFNSSKNAMFAKETIVASRPWGCEVVVDWADPEQEPDEEIMKSVKVLYIKNLSP 257
Query: 194 SWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK 253
T+ + R+ + G V+ +++I+D FAFV ++ + A+ + + N
Sbjct: 258 RVTDADLRRAFAERGLQVERVKVIRD---------FAFVHFFTRSLAEKAMK--VCQNLT 306
Query: 254 LDGNTPTVSWAEP 266
LD VSWA+P
Sbjct: 307 LDDLPLQVSWAKP 319
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 123/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 33 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 92
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 93 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 151
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 152 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 204
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E LKELF + G+ V SGK + FGF+ Y +
Sbjct: 205 LGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHE 264
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ E+ G+ + V A+ + ++ E
Sbjct: 265 DANKAVEEMNGKEMSGKAIFVGRAQKKVERQAE 297
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 123 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 180
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 181 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDDN 228
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 229 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EMSGKAIF 284
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 285 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 344
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 345 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 391
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 104/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +++L++L G+ V +++D SG+SKG
Sbjct: 196 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRD-PSGKSKG 254
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 255 FGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 314
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 315 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 366
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 367 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILSQFQ 424
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 136/273 (49%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E+ L G V + + +D+ + S G+A+V F A++A+D
Sbjct: 287 ASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYVNFLHLADAQKALD 346
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ +GK+IR S+ + L FI N+ KS K + G + + +
Sbjct: 347 TMNFDVIQGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGRILSS-K 405
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D Q ++G+AFV + N + AD + ++M N KL V KS D A
Sbjct: 406 VMSDDQG---SKGYAFVHFQNQSAADRAIEEM---NGKLLQGCK-VFVGRFKSRQDREAE 458
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
+ AS+ +Y+KN + ++LK++F ++G+ V SGK + FGF+ +
Sbjct: 459 LRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 518
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A KA+++ +I+GQ++ VA A+ + ++ E
Sbjct: 519 AAKKAVEEMNGRDINGQLIFVARAQKKVERQAE 551
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 122/277 (44%), Gaps = 34/277 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L + G + ++ D D G SKG+AFV F+++ A RAI+E+
Sbjct: 377 VFIKNLDKSIDNKTLYEHFSAFGRILSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEM 434
Query: 166 CSKDFKGKTI---------------RCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K +G + R SE N ++I N ++ + V G
Sbjct: 435 NGKLLQGCKVFVGRFKSRQDREAELRSKASEFTN-VYIKNFGGDMDDERLKDVFSKYGKT 493
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ +++++ D S+ GF FV + ++ A + ++M + ++G V+ A+ K
Sbjct: 494 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVARAQKKVER 548
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK 319
+ QV LYVKNL + ++L++ F G +++V +
Sbjct: 549 QAELKQMFEQLKNERIRGCQVVKLYVKNLDDTIDDEKLRKEFSSFGSISRVKVMQEEGQS 608
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FG I ++ ALKA+ + + + L +ALA+
Sbjct: 609 KGFGLICFSSPEDALKAMTEMNGRILGSKPLSIALAQ 645
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 90/197 (45%), Gaps = 35/197 (17%)
Query: 90 KEKHDQLLALPPHGSE---VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
K + D+ L SE V+I D +E L+D+ G+ V ++ D SG+SKG
Sbjct: 450 KSRQDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 508
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE----------------TNNR----- 185
F FV+F S E AK+A++E+ +D G+ I + ++ N R
Sbjct: 509 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKNERIRGCQ 568
Query: 186 ---LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADY 242
L++ N+ + +++ RK G +I +K Q +++GF + + + +
Sbjct: 569 VVKLYVKNLDDTIDDEKLRKEFSSFG----SISRVKVMQEEGQSKGFGLICF---SSPED 621
Query: 243 SRQKMTSANFKLDGNTP 259
+ + MT N ++ G+ P
Sbjct: 622 ALKAMTEMNGRILGSKP 638
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 123/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 28 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 87
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 88 TMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 146
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 147 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 199
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E LKELF + G+ V SGK + FGF+ Y +
Sbjct: 200 LGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHE 259
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ E+ G+ + V A+ + ++ E
Sbjct: 260 DANKAVEEMNGKEMSGKAIFVGRAQKKVERQAE 292
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 126/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 118 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 175
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 176 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDGN 223
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++D + +++GF FV Y + A+ + ++M ++ G
Sbjct: 224 LKELFSQFGKTLSVKVMRD--SSGKSKGFGFVSYEKHEDANKAVEEMNGK--EMSGKAIF 279
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L+ F G +T
Sbjct: 280 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITS 339
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 340 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 386
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 95/207 (45%), Gaps = 35/207 (16%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ + +L++L G+ V +++D SG+SKG
Sbjct: 191 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKG 249
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 250 FGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 309
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ R+ G +++D R++GF FV + + +
Sbjct: 310 GVN-LYIKNLDDTIDDEKLRREFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 361
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPK 267
+ + +T N ++ G+ P V+ A+ K
Sbjct: 362 EATKAVTEMNGRIVGSKPLYVALAQRK 388
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 125/275 (45%), Gaps = 16/275 (5%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P + +++G L + ++ L D+ +G+V V + +D + S G+ +V + S + A
Sbjct: 32 VPYMPTSLYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDA 91
Query: 159 KRAIDELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPG 210
RA+D L F K IR S + +FI N+ K+ K G
Sbjct: 92 ARALDILNFTPFNNKPIRIMYSHRDPSIRKSGTGNIFIKNLDKTIDHKALHDTFSSFG-N 150
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTP 270
+ + ++ D + ++RG+ FV + N A + K+ N V
Sbjct: 151 ILSCKVATD--SSGQSRGYGFVQFDNEEAAQNAIDKLNGMLL----NDKQVYVGHFLRKH 204
Query: 271 DHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAE 329
+ +A+ + +YVKNL E+TT + LK +F +GE+T V GK + FGF+++
Sbjct: 205 ERDSASNKKFNNVYVKNLSESTTEEDLKNIFGEYGEITSAVIMRDADGKSKCFGFVNFEN 264
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A KA++ +ID + V A+ ++ + E
Sbjct: 265 TDAAAKAVESLNGKKIDDKEWYVGKAQKKSERELE 299
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 125/280 (44%), Gaps = 29/280 (10%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + + D SG+S+G+ FV F ++E A+ AID+L
Sbjct: 127 IFIKNLDKTIDHKALHDTFSSFGNILSCKVATD-SSGQSRGYGFVQFDNEEAAQNAIDKL 185
Query: 166 CSKDFKGKTI----------RCSMSETN-NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTI 214
K + R S S N +++ N+ +S TE++ + + + G + +
Sbjct: 186 NGMLLNDKQVYVGHFLRKHERDSASNKKFNNVYVKNLSESTTEEDLKNIFGEYGE-ITSA 244
Query: 215 ELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD--- 271
+++D A +++ F FV + N A + + + K+D V A+ KS +
Sbjct: 245 VIMRD--ADGKSKCFGFVNFENTDAAAKAVESLNGK--KIDDKEWYVGKAQKKSERELEL 300
Query: 272 --------HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDF 322
A Q LY+KNL ++ + + LKELF G +T SG R
Sbjct: 301 KSQFEQSMKEAVDKYQGVNLYIKNLDDSISDENLKELFSDFGMITSCKVMRDPSGISRGS 360
Query: 323 GFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR 362
GF+ ++ A +A+ + + + L VALA+ + +R
Sbjct: 361 GFVAFSTPEEASRALAEMNGKMVVSKPLYVALAQRKEERR 400
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 92/208 (44%), Gaps = 34/208 (16%)
Query: 55 TSKEDQSPGANGSHINTEDAVEDE-DKRTASISEDEK-------EKHDQLLALPPHGSEV 106
T QS G + E+A ++ DK + D++ KH++ A + V
Sbjct: 158 TDSSGQSRGYGFVQFDNEEAAQNAIDKLNGMLLNDKQVYVGHFLRKHERDSASNKKFNNV 217
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
++ L + +EEDL+++ GE+ +++D D G+SK F FV F + + A +A++ L
Sbjct: 218 YVKNLSESTTEEDLKNIFGEYGEITSAVIMRDAD-GKSKCFGFVNFENTDAAAKAVESLN 276
Query: 167 SKDFKGK-------------------TIRCSMSETNNR-----LFIGNVPKSWTEKEFRK 202
K K SM E ++ L+I N+ S +++ ++
Sbjct: 277 GKKIDDKEWYVGKAQKKSERELELKSQFEQSMKEAVDKYQGVNLYIKNLDDSISDENLKE 336
Query: 203 VIEDVGPGVDTIELIKDPQAPSRNRGFA 230
+ D G + + ++++DP SR GF
Sbjct: 337 LFSDFG-MITSCKVMRDPSGISRGSGFV 363
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
S +++G L D +E L ++ PIG + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S + +FI N+ S K G + + +
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFG-SILSSK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ + +RGF FV + + A QK + + N V KS A
Sbjct: 130 VVYNEHG---SRGFGFVHFETHEAA----QKAINTMNGMLLNDRKVFVGHFKSRQKREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A +YVKNL N ++L++LF + G + V +G+ R FGF+++ +
Sbjct: 183 LGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ E+ GQ+L V A+ + +++E
Sbjct: 243 EAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSE 275
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 115/278 (41%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + +V ++ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTM 158
Query: 166 CSK----------DFKGKTIR------CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
FK + R ++ TN +++ N+ + E+ + + G
Sbjct: 159 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTN--IYVKNLHANVDEQRLQDLFSQFG- 215
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNN----ACADYSRQKMTSANFKLDGNTPTVSWAE 265
+ ++++++D SR GF FV + + D+ K S G AE
Sbjct: 216 NMQSVKVMRDSNGQSR--GFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQ--KRAE 271
Query: 266 PKSTPDHSAAAASQVKA-------LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG 318
+S Q + LYVKNL ++ ++LKE+F +G +T S
Sbjct: 272 RQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMTESSH 331
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 124/270 (45%), Gaps = 15/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
S +++G L S+ L+ IG V + +D + +S G+ +V F + A++A++
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALE 72
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L + G+ IR S+ + L FI N+ KS +KE G + + +
Sbjct: 73 VLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFG-RILSCK 131
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D S+ G+ FV + CA+ + +K+ N + V PK T S A
Sbjct: 132 IVMDENGQSK--GYGFVHFEKEECAERAIEKIN--NMIIRDRVVYVGKFIPK-TERKSQA 186
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
+ LYVKN P T ++LKE+F GE+ GK + FGF+ Y + A
Sbjct: 187 RKVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAE 246
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A++ EI+G+VL A A+ + ++ E
Sbjct: 247 NAVRTMHGKEIEGRVLYCARAQRKEERQEE 276
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 132/286 (46%), Gaps = 31/286 (10%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K +++L D G + +V D++ G+SKG+ FV F +E A+RAI+++
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDEN-GQSKGYGFVHFEKEECAERAIEKI 161
Query: 166 CSK----------DFKGKTIRCSMSET--NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
+ F KT R S + N L++ N P ++ +++ + G + +
Sbjct: 162 NNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLYVKNFPPETDNEKLKEMFSEFGE-IKS 220
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK------ 267
++KD + S+ GF FV Y + A+ + + M +++G + A+ K
Sbjct: 221 ACVMKDNEGKSK--GFGFVCYLDPDHAENAVRTMHGK--EIEGRVLYCARAQRKEERQEE 276
Query: 268 ---STPDHSAAAASQVKA---LYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGKR 320
A S LYVKNL +N K+L+E F HG +T V + +
Sbjct: 277 LKQKIEKQRAERQSNYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSK 336
Query: 321 DFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGV 366
FGF+ +A A +A+ D I + L VALA+ + ++R + +
Sbjct: 337 GFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRAKLI 382
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
S +++G L D +E L ++ PIG + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S + +FI N+ S K G + + +
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFG-SILSSK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ + +RGF FV + + A QK + + N V KS A
Sbjct: 130 VVYNEHG---SRGFGFVHFETHEAA----QKAINTMNGMLLNDRKVFVGHFKSRQKREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A +YVKNL N ++L++LF + G + V +G+ R FGF+++ +
Sbjct: 183 LGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ E+ GQ+L V A+ + +++E
Sbjct: 243 EAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSE 275
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 115/278 (41%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + +V ++ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTM 158
Query: 166 CSK----------DFKGKTIR------CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
FK + R ++ TN +++ N+ + E+ + + G
Sbjct: 159 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTN--IYVKNLHANVDEQRLQDLFSQFG- 215
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNN----ACADYSRQKMTSANFKLDGNTPTVSWAE 265
+ ++++++D SR GF FV + + D+ K S G AE
Sbjct: 216 NMQSVKVMRDSNGQSR--GFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQ--KRAE 271
Query: 266 PKSTPDHSAAAASQVKA-------LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG 318
+S Q + LYVKNL ++ ++LKE+F +G +T S
Sbjct: 272 RQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMTESSH 331
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
>gi|440800608|gb|ELR21644.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 417
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 118/262 (45%), Gaps = 27/262 (10%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FIG L + +E+ LR+ +P G V V + +D+ + S G+ FV +S+E A A +
Sbjct: 65 LFIGDLARGLNEDQLREAFDPFG-VISVEIKRDRVTNYSLGYGFVLLKSREDAGAAKKAM 123
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSR 225
+ G+ IR ++ N LFIG++ S T + R+V GP I + + +
Sbjct: 124 HRQVVGGRAIRIGWAQKNTNLFIGDLDPSITSAQLREVFRQFGP-------IYEEETFVK 176
Query: 226 NRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYV 285
NR + FV + + A+ ++++M N L + W + A Q +++
Sbjct: 177 NRNYGFVRFRHRKHAEMAKREMN--NKVLGARAIRIGWGD----------ANYQRHCVHI 224
Query: 286 KNLP---ENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHY----AERSSALKAIK 338
+ P E T ++ F+ G V V P + R FGFI+Y A +SA +AI
Sbjct: 225 QFEPAESEALTESEVIAKFEEFGTVMSVNLPRNQGQLRGFGFIYYDDTDAGENSAARAIT 284
Query: 339 DTEKYEIDGQVLEVALARPQTN 360
I G ++ + +N
Sbjct: 285 TLNNSPICGVRIQCNYGKKPSN 306
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVF-EVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
+ +FIG L + LR++ G ++ E VK+++ G FV FR ++ A+ A
Sbjct: 142 TNLFIGDLDPSITSAQLREVFRQFGPIYEEETFVKNRNYG------FVRFRHRKHAEMAK 195
Query: 163 DELCSKDFKGKTIRCSMSETNNRLFIGNV------PKSWTEKEFRKVIEDVGPGVDTIEL 216
E+ +K + IR + N + ++ ++ TE E E+ G T+
Sbjct: 196 REMNNKVLGARAIRIGWGDANYQRHCVHIQFEPAESEALTESEVIAKFEEFG----TVMS 251
Query: 217 IKDPQAPSRNRGFAFVLY 234
+ P+ + RGF F+ Y
Sbjct: 252 VNLPRNQGQLRGFGFIYY 269
>gi|402870468|ref|XP_003899242.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Papio anubis]
Length = 496
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 133/273 (48%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E+ L G V + + +D+ + S G+A+V F A++A+D
Sbjct: 136 ASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTDAQKALD 195
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK+IR S+ + L FI N+ KS K + G + + +
Sbjct: 196 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGKILSS-K 254
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D Q ++G+AFV + N + AD + ++M K + V K+ D A
Sbjct: 255 VMSDDQG---SKGYAFVHFQNQSAADRAIEEMNGRLLK----SCKVFVGRFKNRKDREAE 307
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
+ AS+ +Y+KN + ++LK++F ++G+ V GK + FGF+ +
Sbjct: 308 LRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSRGKSKGFGFVSFDSHE 367
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A KA+++ +I+GQ++ V A+ + ++ E
Sbjct: 368 AAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 400
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 122/278 (43%), Gaps = 34/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L + G++ ++ D D G SKG+AFV F+++ A RAI+E+
Sbjct: 226 VFIKNLDKSIDNKTLYEHFSGFGKILSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEM 283
Query: 166 ------CSKDFKGKT---------IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K F G+ +R SE N ++I N ++ + V G
Sbjct: 284 NGRLLKSCKVFVGRFKNRKDREAELRSKASEFTN-IYIKNFGGDMDDERLKDVFSKYGKT 342
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTP 270
+ +++++ D + S+ GF FV + ++ A + ++M + ++G V A+ K
Sbjct: 343 L-SVKVMTDSRGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 397
Query: 271 DHSAAAA-SQVK----------ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK 319
Q+K LYVKNL + ++L+ F G + +V +
Sbjct: 398 QAELKQMFEQLKRERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQQEGQS 457
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357
+ FGFI ++ A KA+ + + + + +ALA+
Sbjct: 458 KGFGFICFSSLEDATKAMIEMNGRFLGSKPISIALAQS 495
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 87/198 (43%), Gaps = 32/198 (16%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
++ K++ +L + + ++I D +E L+D+ G+ V ++ D G+SKG
Sbjct: 299 KNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SRGKSKG 357
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRC--------------SMSETNNR------- 185
F FV+F S E AK+A++E+ +D G+ I M E R
Sbjct: 358 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQ 417
Query: 186 ---LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADY 242
L++ N+ + +++ R G +I +K Q +++GF F+ + + +
Sbjct: 418 GVKLYVKNLDDTIDDEKLRNEFSSFG----SIIRVKVMQQEGQSKGFGFICF---SSLED 470
Query: 243 SRQKMTSANFKLDGNTPT 260
+ + M N + G+ P
Sbjct: 471 ATKAMIEMNGRFLGSKPI 488
Score = 38.5 bits (88), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G ++++ L +E LR+ G + V +++ + G+SKGF F+ F S E A +A
Sbjct: 417 QGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQQE--GQSKGFGFICFSSLEDATKA 474
Query: 162 IDELCSKDFKGKTIRCSMSET 182
+ E+ + K I +++++
Sbjct: 475 MIEMNGRFLGSKPISIALAQS 495
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 129/275 (46%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V K + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQDAADRAIEKMNGMLL----NDRKVFVGRFKCRREREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEV--TKVVT-PPGKSGKRDFGFIHYAE 329
A A + +Y+KN E+ ++LKE F ++G+ KV+T P GKS + FGF+ +
Sbjct: 183 LGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKS--KGFGFVSFER 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ D +++G+++ V A+ + ++ E
Sbjct: 241 HEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAE 275
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 125/279 (44%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F +++ A RAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKM 158
Query: 166 C------SKDFKGKTIRC---------SMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K F G+ +C + ++ ++I N + ++ ++ G
Sbjct: 159 NGMLLNDRKVFVGR-FKCRREREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKT 217
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ +++++ DP +++GF FV + + A+ + M + ++G V A+ K
Sbjct: 218 L-SVKVMTDPSG--KSKGFGFVSFERHEDANKAVDDMNGKD--VNGKIMFVGRAQKKVER 272
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q LY+KNL + ++L++ F G +T KV+ G+S
Sbjct: 273 QAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G ++I L +E LR P G + ++ ++ G SKGF FV F S E A +A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKA 349
Query: 162 IDELCSKDFKGKTIRCSMSE 181
+ E+ + K + ++++
Sbjct: 350 VTEMNGRIVGSKPLYVALAQ 369
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 124/274 (45%), Gaps = 21/274 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L +E L ++ IG V + + +D + S G+A+V + + A+RA++
Sbjct: 57 TSLYVGELDPTVTEAMLYEIFSMIGPVSSIRVCRDAVTRRSLGYAYVNYLNAADAERALE 116
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+L K K R S+ + L FI N+ ++ K G D +
Sbjct: 117 QLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFG---DILS 173
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ ++G+ FV Y A+ + + + +L+ V P+ A
Sbjct: 174 CKVAMDSTGASKGYGFVHYVTAESAEAAIKGVN--GMQLNDKVVFVGIHVPRR---ERQA 228
Query: 276 AASQVKA----LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAER 330
+V+A LY+KNLP TT++L E+F ++G VT +SGK R FGF++Y
Sbjct: 229 KIDEVRAHFTNLYIKNLPTEVTTEELNEMFSKYGPVTSAAVQADESGKHRGFGFVNYENH 288
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA KA++ + G +L VA A+ + + E
Sbjct: 289 ESASKAVEALHDKDYKGNILYVARAQKRVERDAE 322
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 91/374 (24%), Positives = 148/374 (39%), Gaps = 46/374 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + + L D G++ + D +G SKG+ FV + + E A+ AI +
Sbjct: 147 IFIKNLDETIDNKALHDTFAAFGDILSCKVAMD-STGASKGYGFVHYVTAESAEAAIKGV 205
Query: 166 CSKDFKGKTI-----------RCSMSETN---NRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
K + + + E L+I N+P T +E ++ GP V
Sbjct: 206 NGMQLNDKVVFVGIHVPRRERQAKIDEVRAHFTNLYIKNLPTEVTTEELNEMFSKYGP-V 264
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ + D ++RGF FV Y N+ A + + + ++K GN V+ A+ + D
Sbjct: 265 TSAAVQADESG--KHRGFGFVNYENHESASKAVEALHDKDYK--GNILYVARAQKRVERD 320
Query: 272 -----------HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGK 319
+ Q LY+KNL + ++L+ F G +T V K
Sbjct: 321 AELRRAHEQQKYETTLKYQGVNLYIKNLDDEYDDEKLQAEFLPFGTITSCKVMKDDKGVS 380
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ--TNKRTEGVYSCAAGVHPSG 377
R FGF+ ++ A KA+ + + + L V+LA+ + ++ E S A +
Sbjct: 381 RGFGFVCFSAPDEATKAVAEMNGKMLGSKPLYVSLAQRKDVRKQQLEAQMSQRAQMRSQQ 440
Query: 378 LPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQP---MIYGRGQMPAGMHMVPMVLPDGRIG 434
+ AG G YG+ + A P M Y MPAGM P P G
Sbjct: 441 IAAAG---IPGAPYGAPPNQMYYGGAAAYPPPGRGMAYPPNGMPAGMPPRPRYAPPG--- 494
Query: 435 YVLQQPGVQMPLPP 448
Q P + MP P
Sbjct: 495 ---QMPPMGMPGAP 505
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 12/187 (6%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+ N L++G + + TE ++ +GP V +I + +D R+ G+A+V Y N A
Sbjct: 53 SQPNTSLYVGELDPTVTEAMLYEIFSMIGP-VSSIRVCRD-AVTRRSLGYAYVNYLNAAD 110
Query: 240 ADYSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
A+ + +++ N+ L N + W S D S Q +++KNL E K L
Sbjct: 111 AERALEQL---NYSLIKNKACRIMW----SQRDPSLRKTGQGN-IFIKNLDETIDNKALH 162
Query: 299 ELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357
+ F G++ +G + +GF+HY SA AIK +++ +V+ V + P
Sbjct: 163 DTFAAFGDILSCKVAMDSTGASKGYGFVHYVTAESAEAAIKGVNGMQLNDKVVFVGIHVP 222
Query: 358 QTNKRTE 364
+ ++ +
Sbjct: 223 RRERQAK 229
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 106/244 (43%), Gaps = 41/244 (16%)
Query: 50 EYDAETSKEDQSPGANGSHINTEDAVEDEDKRT-ASISEDEKEKHDQLLALPPHGSEVFI 108
Y S E G NG +N DK I +E+ ++ + H + ++I
Sbjct: 191 HYVTAESAEAAIKGVNGMQLN--------DKVVFVGIHVPRRERQAKIDEVRAHFTNLYI 242
Query: 109 GGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSK 168
LP + + E+L ++ G V + D +SG+ +GF FV + + E A +A++ L K
Sbjct: 243 KNLPTEVTTEELNEMFSKYGPVTSAAVQAD-ESGKHRGFGFVNYENHESASKAVEALHDK 301
Query: 169 DFKGKTIRCSMS-------------------ETNNR-----LFIGNVPKSWTEKEFRKVI 204
D+KG + + + ET + L+I N+ + +++ +
Sbjct: 302 DYKGNILYVARAQKRVERDAELRRAHEQQKYETTLKYQGVNLYIKNLDDEYDDEKLQAEF 361
Query: 205 EDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT-VSW 263
G + + +++KD + S RGF FV + + D + + + N K+ G+ P VS
Sbjct: 362 LPFG-TITSCKVMKDDKGVS--RGFGFVCF---SAPDEATKAVAEMNGKMLGSKPLYVSL 415
Query: 264 AEPK 267
A+ K
Sbjct: 416 AQRK 419
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 125/270 (46%), Gaps = 15/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L + ++ L DL +G+V V + +D +G S G+ +V + +++ A RAID
Sbjct: 40 TSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAID 99
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L KTIR S+S + +FI N+ KS K + G + + +
Sbjct: 100 VLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGT-IISCK 158
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D A +++G+ FV Y + A + K+ N L + + S
Sbjct: 159 IATD--ASGQSKGYGFVQYDSEEAAQTAIDKL---NGMLMNDKQVYVGVFLRKQDRDSEM 213
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
+ ++ +YVKNL ++T+ L++ F +G +T VV GK + FGF+++ A
Sbjct: 214 SKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAA 273
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + D + V A+ ++ + E
Sbjct: 274 KAVDALNGKKFDDKEWYVGKAQKKSEREVE 303
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 151/362 (41%), Gaps = 49/362 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L + G + + D SG+SKG+ FV + S+E A+ AID+L
Sbjct: 130 IFIKNLDKSIDIKALHETFSSFGTIISCKIATDA-SGQSKGYGFVQYDSEEAAQTAIDKL 188
Query: 166 CSKDFKGKTIRCS-----------MSETN-NRLFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
K + MS+T N +++ N+ S +E + RK + G + +
Sbjct: 189 NGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGT-ITS 247
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD-- 271
+ +++D A +++ F FV + N A + + F D V A+ KS +
Sbjct: 248 VVVMRD--ADGKSKCFGFVNFENPEDAAKAVDALNGKKF--DDKEWYVGKAQKKSEREVE 303
Query: 272 ----HSAAAASQVKA-----LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRD 321
QV LYVKNL + ++LKELF +G +T SG R
Sbjct: 304 LKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRG 363
Query: 322 FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRT--EGVYSCAAGV------ 373
GF+ ++ A +A+ + I + L VALA+ + +R + +S V
Sbjct: 364 SGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSM 423
Query: 374 ------HPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGR--GQMPAGMHMVP 425
+ G P G F G A ++ + AG G QQ ++ G G P +P
Sbjct: 424 GPRMPMYSPGAPGMGQQLFYGQAPPAM---IAPQAGFGYQQQLVPGMRPGGGPMPNFFMP 480
Query: 426 MV 427
MV
Sbjct: 481 MV 482
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD--FGFIHYAERSSALKAIKD 339
+LYV +L ++ T QL +LF + G+V V S R +G+++Y+ + A +AI
Sbjct: 41 SLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDV 100
Query: 340 TEKYEIDGQVLEVALARPQTNKRTEG 365
++ + + V+++R R G
Sbjct: 101 LNFTPLNNKTIRVSVSRRDPTDRKSG 126
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 126/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L +D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KG+ +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D +RG+ FV + + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SRGYGFVHFETHDAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGKRDFGFIHYAERS 331
A A + +Y+KN E+ ++LKE+F + G T V V G R FGF+ +
Sbjct: 183 LGARAREFTNVYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTDESGGGRGFGFVSFENHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+++ V A+ + ++ E
Sbjct: 243 DAQKAVDEMNGKELNGRIMFVGRAQKKMERQME 275
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 121/278 (43%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ S+G+ FV F + + A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SRGYGFVHFETHDAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + +++ +++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKEIFSKFG-NA 217
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
++ ++ D R GF FV + N+ A + +M +L+G V A+ K
Sbjct: 218 TSVRVMTDESGGGR--GFGFVSFENHEDAQKAVDEMNGK--ELNGRIMFVGRAQKKMERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 MELKRRFEQMKQDRTTRYQGVNLYVKNLDDGIDDERLRKEFSPFGSITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T DA E ++ K + KE+ +L A + V
Sbjct: 134 ENGSRGYGFVHFETHDAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+++ G V ++ D +SG +GF FV+F + E A++A+DE+
Sbjct: 194 YIKNFGEDMDDEKLKEIFSKFGNATSVRVMTD-ESGGGRGFGFVSFENHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ G+ +
Sbjct: 253 GKELNGRIM 261
>gi|355715816|gb|AES05411.1| RNA binding motif protein 46 [Mustela putorius furo]
Length = 149
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 93/152 (61%), Gaps = 6/152 (3%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI L
Sbjct: 1 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRIL 59
Query: 166 CSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP- 223
+ + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 60 NNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSATD 117
Query: 224 -SRNRGFAFVLYYNNACADYSRQKMTSANFKL 254
++NRGFAFV Y ++ A +R+K+ F+L
Sbjct: 118 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQL 149
>gi|290981403|ref|XP_002673420.1| polyadenylate binding protein [Naegleria gruberi]
gi|284087003|gb|EFC40676.1| polyadenylate binding protein [Naegleria gruberi]
Length = 571
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 129/279 (46%), Gaps = 24/279 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L ++ SE L DL +G + + + +D + +S G+A+V F++ + A+RA+D
Sbjct: 6 ASLYVGDLHEEISEALLFDLFHEVGPIISIRICRDAMTRKSLGYAYVNFQNPQDAERALD 65
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L KG IR S+ + +FI N+ KS K + D I
Sbjct: 66 TLNYASVKGIPIRIMWSQRDPSIRKSGIGNIFIKNLDKSIDN----KALYDTFSAFGNIL 121
Query: 216 LIKDPQAPSR---------NRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEP 266
K QA + + G+ FV + A+ + K+ L+G V
Sbjct: 122 SCKVCQATKKGDNGGDNVESAGYGFVHFETQEAAEKAIAKING--MLLNGKQVFVGPFVK 179
Query: 267 KSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFI 325
K+ + +YVKNL + K+L E+F + GE+ V G++G ++FGFI
Sbjct: 180 KTERLKILSNEDSFTNIYVKNLDASVDEKELSEVFSKFGEIQNAVVMRGENGASKEFGFI 239
Query: 326 HYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
++A+ +SAL AI + + + + L V A+ + +R +
Sbjct: 240 NFADHASALIAIDEMNEKDFKNKKLFVGRAQKKNERRAK 278
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/304 (21%), Positives = 122/304 (40%), Gaps = 32/304 (10%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSG-------ESKGFAFVAFRSKEVA 158
+FI L K + L D G + + + G ES G+ FV F ++E A
Sbjct: 96 IFIKNLDKSIDNKALYDTFSAFGNILSCKVCQATKKGDNGGDNVESAGYGFVHFETQEAA 155
Query: 159 KRAIDELCSKDFKGKTIRC-------------SMSETNNRLFIGNVPKSWTEKEFRKVIE 205
++AI ++ GK + S ++ +++ N+ S EKE +V
Sbjct: 156 EKAIAKINGMLLNGKQVFVGPFVKKTERLKILSNEDSFTNIYVKNLDASVDEKELSEVFS 215
Query: 206 DVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK----LDGNTPTV 261
G + + + + A ++ F F+ + ++A A + +M +FK G
Sbjct: 216 KFGEIQNAVVMRGENGA---SKEFGFINFADHASALIAIDEMNEKDFKNKKLFVGRAQKK 272
Query: 262 SWAEPKSTPDHSAAAASQVKA-----LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGK 316
+ K +V LYVKNL ++ ++L++ F + G++T
Sbjct: 273 NERRAKLKEYFQKLKQEKVNKYKGLNLYVKNLDDSVDDERLRQEFSKFGDITSAKVMSDN 332
Query: 317 SGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPS 376
R FGF+ + +A KA+ + + I + L V A+P+ +R++ A P
Sbjct: 333 KQSRGFGFVCFKTPEAANKALTEMSGHMIGSKPLYVNFAQPKELRRSQLEAQYNARKQPQ 392
Query: 377 GLPH 380
+P
Sbjct: 393 MIPQ 396
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 123/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+R ++
Sbjct: 316 ASLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMLTRRSLGYAYVNFQQLADAERVLE 375
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K K G + + +
Sbjct: 376 TMNLDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLEKSIDNKALYKTFSAFG-NILSCK 434
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHS-- 273
+I D ++G+ FV + N AD + +KM N V KS +
Sbjct: 435 VISDENG---SKGYGFVHFENQQAADKAIEKMNGVRL----NNLKVYVGRFKSRKERELE 487
Query: 274 -AAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ +L E+F + G V +SGK + FGF+ Y +
Sbjct: 488 LGARAREFTNVYIKNFGEDMDNDRLTEVFGKFGHALSVKVMTDESGKSKGFGFVSYEKHE 547
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A +A+ + E +G+ + V A+ + ++TE
Sbjct: 548 DAQRAVDEMNGKEFNGKRIYVGRAQKKGERQTE 580
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 33/203 (16%)
Query: 90 KEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAF 149
KE+ +L A + V+I +D + L ++ G V ++ D +SG+SKGF F
Sbjct: 482 KERELELGARAREFTNVYIKNFGEDMDNDRLTEVFGKFGHALSVKVMTD-ESGKSKGFGF 540
Query: 150 VAFRSKEVAKRAIDELCSKDFKGKTIRCSMS-------------------ETNNR----- 185
V++ E A+RA+DE+ K+F GK I + E ++R
Sbjct: 541 VSYEKHEDAQRAVDEMNGKEFNGKRIYVGRAQKKGERQTELKRHFEQVKQERSSRYQGVN 600
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
L++ N+ S ++ RK G TI K +RGF FV + + + + +
Sbjct: 601 LYVKNLDDSIDDERLRKAFSPFG----TITSAKVMMEGGHSRGFGFVCF---SAPEEAAK 653
Query: 246 KMTSANFKLDGNTPT-VSWAEPK 267
++ N KL P V+ A+ K
Sbjct: 654 AVSEMNGKLVATKPLYVALAQRK 676
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 128/296 (43%), Gaps = 58/296 (19%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L G + ++ D++ SKG+ FV F +++ A +AI+++
Sbjct: 406 IFIKNLEKSIDNKALYKTFSAFGNILSCKVISDENG--SKGYGFVHFENQQAADKAIEKM 463
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKE---------FRKV-IEDVGPGVD--- 212
+R + N ++++G KS E+E F V I++ G +D
Sbjct: 464 -------NGVRLN----NLKVYVGRF-KSRKERELELGARAREFTNVYIKNFGEDMDNDR 511
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
+++++ D +++GF FV Y + A + +M F +G
Sbjct: 512 LTEVFGKFGHALSVKVMTDESG--KSKGFGFVSYEKHEDAQRAVDEMNGKEF--NGKRIY 567
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K ++ Q LYVKNL ++ ++L++ F G +T
Sbjct: 568 VGRAQKKGERQTELKRHFEQVKQERSSRYQGVNLYVKNLDDSIDDERLRKAFSPFGTITS 627
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRT 363
KV+ G S R FGF+ ++ A KA+ + + + L VALA+ + +++
Sbjct: 628 AKVMMEGGHS--RGFGFVCFSAPEEAAKAVSEMNGKLVATKPLYVALAQRKRDRQV 681
>gi|354466116|ref|XP_003495521.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
gi|344243583|gb|EGV99686.1| Polyadenylate-binding protein 4-like [Cricetulus griseus]
Length = 370
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 132/280 (47%), Gaps = 20/280 (7%)
Query: 97 LALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
L + +++G L +D +E+ L +G V + + +D S S G+A+V F +
Sbjct: 3 LEAKYRAASLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRDLVSRRSLGYAYVNFLQLD 62
Query: 157 VAKRAIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVG 208
A++A+D + +GK+IR S+ + L FI N+ KS K + G
Sbjct: 63 DAQKALDTMNFDLIQGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFG 122
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
+ + +++ D + RG+ FV Y + + AD + ++M + TV KS
Sbjct: 123 KILSS-KVMSDEEGS---RGYGFVHYQDQSAADRAIEEMNGKLLR----DCTVFVDRFKS 174
Query: 269 TPDHSA---AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGF 324
D A + S+ +Y+KNL +N + LK +F ++G+ V +GK + FGF
Sbjct: 175 RKDREAELRSKTSEFTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKDDNGKSKGFGF 234
Query: 325 IHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ + +A A+++ +I+GQ + V A+ + ++ E
Sbjct: 235 VSFYNHEAARNAVEEMNGQDINGQTIFVGRAQKKVERQAE 274
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 106/248 (42%), Gaps = 34/248 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L + P G++ ++ D++ S+G+ FV ++ + A RAI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKILSSKVMSDEEG--SRGYGFVHYQDQSAADRAIEEM 157
Query: 166 CSKDFKGKTI---------------RCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K + T+ R SE N ++I N+ + ++ + + G
Sbjct: 158 NGKLLRDCTVFVDRFKSRKDREAELRSKTSEFTN-VYIKNLGDNMDDEGLKNIFSKYGQT 216
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ +++++KD S+ GF FV +YN+ A + ++M + ++G T V A+ K
Sbjct: 217 L-SVKVMKDDNGKSK--GFGFVSFYNHEAARNAVEEMNGQD--INGQTIFVGRAQKKVER 271
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK 319
A Q LY+KNL E + L+ F G + +V
Sbjct: 272 QAELKEKFEQMKKERIRARQAAKLYIKNLDETIDDETLRREFSSFGSICRVKVMQEAGQS 331
Query: 320 RDFGFIHY 327
+ FG I +
Sbjct: 332 KGFGLICF 339
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 81/171 (47%), Gaps = 29/171 (16%)
Query: 90 KEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAF 149
K++ +L + + V+I L + +E L+++ G+ V ++KD D+G+SKGF F
Sbjct: 176 KDREAELRSKTSEFTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKD-DNGKSKGFGF 234
Query: 150 VAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN------------------------NR 185
V+F + E A+ A++E+ +D G+TI ++ +
Sbjct: 235 VSFYNHEAARNAVEEMNGQDINGQTIFVGRAQKKVERQAELKEKFEQMKKERIRARQAAK 294
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYN 236
L+I N+ ++ ++ R+ G +I +K Q +++GF + +++
Sbjct: 295 LYIKNLDETIDDETLRREFSSFG----SICRVKVMQEAGQSKGFGLICFFS 341
>gi|242004750|ref|XP_002423241.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506227|gb|EEB10503.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 487
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 120/258 (46%), Gaps = 11/258 (4%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
PPHG+E+FI LP D E +L + IG ++EV L SG ++G+AF+ + A
Sbjct: 23 PPHGTEIFIKNLPDDVFEIELFQIFSTIGRIYEVRLPVHW-SGINRGYAFIRYTKISEAD 81
Query: 160 RAIDELCSKDFKGK-TIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI + + K TI+ S N RLF+ VP T +E + + V V + +
Sbjct: 82 AAIKAFDMFEIRNKRTIKIERSVDNTRLFLSCVPNDKTSEEIQCDLLTVVDNVKKVYVYP 141
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMT-SANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
+ PS RG+AFV + ++ A +++ +T F L +WA P P + +
Sbjct: 142 TLENPSIFRGYAFVEFKSHRDAAIAKRILTPDVCFNLFEKKCIAAWANP--LPFLNESIL 199
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337
+ L+++N+P+ + +K++ + E + + F ++ + AL I
Sbjct: 200 KTINILFIRNVPKEIKSNTIKKIIENILEDNSLQKVKRLNNFAFLTFRNHEKAKFALNYI 259
Query: 338 KD------TEKYEIDGQV 349
KD +EK +I+ V
Sbjct: 260 KDHPSLLGSEKIQIEWAV 277
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 23/181 (12%)
Query: 103 GSEVFIGGLPKDASEEDLR-DLCEPIGEVFEVGLVKDKDS-GESKGFAFVAFRSKE---V 157
+ +F+ +P D + E+++ DL + V +V + ++ +G+AFV F+S +
Sbjct: 106 NTRLFLSCVPNDKTSEEIQCDLLTVVDNVKKVYVYPTLENPSIFRGYAFVEFKSHRDAAI 165
Query: 158 AKRAID-ELCSKDFKGKTIRC----------SMSETNNRLFIGNVPKSWTEKEFRKVIED 206
AKR + ++C F+ K I S+ +T N LFI NVPK +K+IE+
Sbjct: 166 AKRILTPDVCFNLFEKKCIAAWANPLPFLNESILKTINILFIRNVPKEIKSNTIKKIIEN 225
Query: 207 VGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEP 266
+ Q R FAF+ + N+ A ++ + L + WA P
Sbjct: 226 ILED-------NSLQKVKRLNNFAFLTFRNHEKAKFALNYIKDHPSLLGSEKIQIEWAVP 278
Query: 267 K 267
+
Sbjct: 279 R 279
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 99/363 (27%), Positives = 160/363 (44%), Gaps = 51/363 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + + D SG+SKG+ FV + S+E A++AI++L
Sbjct: 117 IFIKNLDKAIDHKALHDTFSAFGNILSCKVAVD-SSGQSKGYGFVQYDSEEAAQKAIEKL 175
Query: 166 CSKDFKGKTIRCS---------MSETNNR---LFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
K + M+ R +F+ N+ +S E+E RK+ + G + +
Sbjct: 176 NGMLLNDKQVYVGPFVRKHERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFG-AITS 234
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD-- 271
+ ++KD ++R F FV + N D +R +KLD V A+ KS +
Sbjct: 235 VAVMKDEDG--KSRCFGFVNFEN--AEDAARAVEALNGYKLDNKDWFVGRAQKKSEREME 290
Query: 272 ------HSAAAA---SQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKR 320
SA A SQ LY+KNL ++ + ++LKELF +G +T KV+ P K
Sbjct: 291 LKHRFEQSAKEAVDKSQGLNLYIKNLDDSISDEKLKELFSPYGTITSCKVMRDPSGVSKG 350
Query: 321 DFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE-----------GVYSC 369
GF+ ++ A +A+ + + + L VALA+ + +R + S
Sbjct: 351 S-GFVAFSNPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPIAMASS 409
Query: 370 AA---GVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGR--GQMPAGMHMV 424
A ++P G P G F G ++ L AG G QQ ++ G G P +
Sbjct: 410 VAPRMPMYPPGGPGLGQQIFYGQPQPAM---LPPQAGFGYQQQLVPGMRPGGGPMPNFFM 466
Query: 425 PMV 427
PMV
Sbjct: 467 PMV 469
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 125/270 (46%), Gaps = 15/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L + ++ L DL +G+V V + +D S S G+ +V + + + A RA++
Sbjct: 27 TSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALE 86
Query: 164 ELCSKDFKGKTIRCSMSET--------NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L GK IR S N +FI N+ K+ K G + + +
Sbjct: 87 VLNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFG-NILSCK 145
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D + +++G+ FV Y + A + +K+ L+ V K D A
Sbjct: 146 VAVD--SSGQSKGYGFVQYDSEEAAQKAIEKLNG--MLLNDKQVYVGPFVRKHERDM-AV 200
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
++ ++VKNL E+T ++L+++F G +T V + GK R FGF+++ A
Sbjct: 201 DKTRFTNVFVKNLSESTLEEELRKIFGEFGAITSVAVMKDEDGKSRCFGFVNFENAEDAA 260
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A++ Y++D + V A+ ++ + E
Sbjct: 261 RAVEALNGYKLDNKDWFVGRAQKKSEREME 290
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G ++I L S+E L++L P G + +++D SG SKG FVAF + E A RA
Sbjct: 307 QGLNLYIKNLDDSISDEKLKELFSPYGTITSCKVMRDP-SGVSKGSGFVAFSNPEEASRA 365
Query: 162 IDELCSKDFKGKTIRCSMSE 181
+ E+ K K + ++++
Sbjct: 366 LSEMNGKMVVSKPLYVALAQ 385
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 136/301 (45%), Gaps = 31/301 (10%)
Query: 75 VEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVG 134
++D+ K+ A+ SE + ++ + +++G L SE L D+ PIG V +
Sbjct: 17 IQDDQKQAATGSESQ--------SVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIR 68
Query: 135 LVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN--------NRL 186
+ +D + S G+A+V F E ++AI++L KG+ R S+ + +
Sbjct: 69 VCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNI 128
Query: 187 FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQK 246
FI N+ K G + + ++ D S +GF FV + A ++
Sbjct: 129 FIKNLHPDIDNKALYDTFSVFG-DILSSKIATDENGKS--KGFGFVHFEEEGAA---KEA 182
Query: 247 MTSAN-FKLDGN----TPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELF 301
+ + N L+G P +S E S + + A + LYVKN+ TT +Q +ELF
Sbjct: 183 IDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTN---LYVKNINSETTDEQFQELF 239
Query: 302 QRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTN 360
+ G + GK + FGF++Y + A+KA++ E++G+ L V A+ +
Sbjct: 240 AKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNE 299
Query: 361 K 361
+
Sbjct: 300 R 300
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 133/285 (46%), Gaps = 32/285 (11%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L D + L D G++ + D ++G+SKGF FV F + AK AID L
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 166 CSKDFKGKTIRCS-----------MSETN---NRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
G+ I + + ET L++ N+ T+++F+++ GP V
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 246
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ L KD A + +GF FV Y + A + + + + +L+G V A+ K+
Sbjct: 247 -SASLEKD--ADGKLKGFGFVNYEKHEDAVKAVEALNDS--ELNGEKLYVGRAQKKNERM 301
Query: 272 H-----------SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK- 319
H A Q L+VKNL ++ ++L+E F +G +T ++GK
Sbjct: 302 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS 361
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ FGF+ ++ A KAI + + + G+ L VA+A+ + +R++
Sbjct: 362 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 406
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +F+ L +E L + P G + +++ ++G+SKGF FV F + E A +A
Sbjct: 320 QGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMR-TENGKSKGFGFVCFSTPEEATKA 378
Query: 162 IDELCSKDFKGKTIRCSMSE 181
I E + GK + ++++
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQ 398
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 126/282 (44%), Gaps = 27/282 (9%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K+ + L D G + + D + GES+G+ FV F +E A++AID +
Sbjct: 98 IFIKNLNKEIDNKALYDTFSAFGTILSCKVAAD-EKGESRGYGFVHFEKEEDAQKAIDTV 156
Query: 166 CSKDFKGKTIRCSM-----------SETNNRLFIGNVPKSW-TEKEFRKVIEDVGPGVDT 213
K + + + T +++ N+P S+ T + +K+ E G T
Sbjct: 157 NGKMLLKQVVTVTKFLSRKEREQQGGRTYTNIYVKNLPDSYATNDDLKKLFEKFGTITST 216
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLD-----GNTPTVSWAEPKS 268
L KD ++RGF FV + N+ A+ + + M + D G E +
Sbjct: 217 F-LAKDEN--DKSRGFGFVNFENSEAANAAVEAMNEKEIETDRKLFVGRAMKKHEREREL 273
Query: 269 TPDHSAA-----AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDF 322
H ++ LY+K+LPE+ T L++ F + G +T + +G R F
Sbjct: 274 KRIHDKIRQERDEKNKNSNLYIKHLPEDVTEDALRDKFSKFGTITSLKIMTDNNGDSRGF 333
Query: 323 GFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
GF+++ A AI++ IDG+ L VALA + +++ +
Sbjct: 334 GFVNFDSADEAAAAIQEMHGSMIDGKPLYVALALRKVDRQKQ 375
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 116/260 (44%), Gaps = 17/260 (6%)
Query: 97 LALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
+A + +++G L + +E L + +G V + + +D S +S G+A+V ++
Sbjct: 1 MAEHQQNASLYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHA 60
Query: 157 VAKRAIDELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVG 208
AK A++EL + K R ++ N +FI N+ K K G
Sbjct: 61 DAKHALEELNFEKIHDKPCRIMWAQRNPAARRSGAGNIFIKNLNKEIDNKALYDTFSAFG 120
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
+ + ++ D + S RG+ FV + A ++ + + N K+ V+ + S
Sbjct: 121 T-ILSCKVAADEKGES--RGYGFVHFEKEEDA---QKAIDTVNGKMLLKQ-VVTVTKFLS 173
Query: 269 TPDHSAAAASQVKALYVKNLPEN-TTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIH 326
+ +YVKNLP++ T LK+LF++ G +T ++ K R FGF++
Sbjct: 174 RKEREQQGGRTYTNIYVKNLPDSYATNDDLKKLFEKFGTITSTFLAKDENDKSRGFGFVN 233
Query: 327 YAERSSALKAIKDTEKYEID 346
+ +A A++ + EI+
Sbjct: 234 FENSEAANAAVEAMNEKEIE 253
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 94/204 (46%), Gaps = 19/204 (9%)
Query: 181 ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNR-GFAFVLYYNNAC 239
+ N L++G++ TE + +G V +I + +D A SR G+A+V Y +A
Sbjct: 5 QQNASLYVGDLHPEVTEATLYEFFSQMG-SVISIRVCRD--AVSRQSLGYAYVNYQQHAD 61
Query: 240 ADYSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
A ++ +++ NF+ + P + WA+ + AA S +++KNL + K L
Sbjct: 62 AKHALEEL---NFEKIHDKPCRIMWAQ-----RNPAARRSGAGNIFIKNLNKEIDNKALY 113
Query: 299 ELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVA--LA 355
+ F G + + G+ R +GF+H+ + A KAI + QV+ V L+
Sbjct: 114 DTFSAFGTILSCKVAADEKGESRGYGFVHFEKEEDAQKAIDTVNGKMLLKQVVTVTKFLS 173
Query: 356 RPQTNKRTEGVYSCAAGVHPSGLP 379
R + ++ Y+ ++ LP
Sbjct: 174 RKEREQQGGRTYT---NIYVKNLP 194
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
S ++I LP+D +E+ LRD G + + ++ D ++G+S+GF FV F S + A AI
Sbjct: 291 SNLYIKHLPEDVTEDALRDKFSKFGTITSLKIMTD-NNGDSRGFGFVNFDSADEAAAAIQ 349
Query: 164 ELCSKDFKGKTIRCSMS 180
E+ GK + +++
Sbjct: 350 EMHGSMIDGKPLYVALA 366
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 125/276 (45%), Gaps = 21/276 (7%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
P GS +++G L + +E L ++ IG V + + +D + S G+A+V F + A+R
Sbjct: 43 PSGS-LYVGDLHPEVTEAQLFEIFNNIGPVVSIRVCRDAITRRSLGYAYVNFHAAVDAER 101
Query: 161 AIDELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+D L +GK R S+ + +FI N+ K+ K G +
Sbjct: 102 ALDTLNYSLIRGKPCRIMWSQRDPAVRKSGLGNVFIKNLDKTIDNKALLDTFSAFG-NIL 160
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ +++ D ++G+ FV Y A+ + K+ ++G V P+
Sbjct: 161 SCKVVTDENG---SKGYGFVHYETQEAAETAIAKVNG--MVINGKQVFVGIFVPRKERVE 215
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD----FGFIHYA 328
++ ++VKNLPE+TT L ++F + G++T VV KS D FGF+ Y
Sbjct: 216 LGEGVTKFTNVFVKNLPEDTTDAALNDMFSKFGKITSVVIM--KSSDDDKSKGFGFVCYE 273
Query: 329 ERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ A A+ E+ G+ L VA A+ + + E
Sbjct: 274 KVEDAQAAVNALNGTELAGKTLFVARAQKKAEREAE 309
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 124/286 (43%), Gaps = 33/286 (11%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+ FV + ++E A+ AI ++
Sbjct: 135 VFIKNLDKTIDNKALLDTFSAFGNILSCKVVTDENG--SKGYGFVHYETQEAAETAIAKV 192
Query: 166 CSKDFKGKTI----------RCSMSETNNR---LFIGNVPKSWTEKEFRKVIEDVGPGVD 212
GK + R + E + +F+ N+P+ T+ + G +
Sbjct: 193 NGMVINGKQVFVGIFVPRKERVELGEGVTKFTNVFVKNLPEDTTDAALNDMFSKFGK-IT 251
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD- 271
++ ++K +++GF FV Y A + + +L G T V+ A+ K+ +
Sbjct: 252 SVVIMKSSD-DDKSKGFGFVCYEKVEDAQAAVNALNGT--ELAGKTLFVARAQKKAEREA 308
Query: 272 -----HSAAAASQVKA-----LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-R 320
+ A ++ LYVKNL + +++ F G +T V + GK R
Sbjct: 309 ELKQRYDALRLERINKYQGINLYVKNLDDAIDEDKIRTEFAPFGTITSVKIMRDEKGKSR 368
Query: 321 DFGFIHYAERSSALKAIKDTEKYEIDG--QVLEVALARPQTNKRTE 364
FGFI ++ A KA+ + I G + L VALA+ ++R +
Sbjct: 369 GFGFICFSSAEEATKAVTEMNGQTIQGFPKPLYVALAQRAEDRRAQ 414
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 83/186 (44%), Gaps = 22/186 (11%)
Query: 8 EERVDLDE------DDYMEEIDDDPEEQLDDD-----GEVGRDGNVKQNDEDEE------ 50
+ERV+L E + +++ + +D + +D G++ +K +D+D+
Sbjct: 211 KERVELGEGVTKFTNVFVKNLPEDTTDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFV 270
Query: 51 -YDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLL---ALPPHGSEV 106
Y+ + NG+ + + ++ A + K+++D L G +
Sbjct: 271 CYEKVEDAQAAVNALNGTELAGKTLFVARAQKKAEREAELKQRYDALRLERINKYQGINL 330
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
++ L E+ +R P G + V +++D + G+S+GF F+ F S E A +A+ E+
Sbjct: 331 YVKNLDDAIDEDKIRTEFAPFGTITSVKIMRD-EKGKSRGFGFICFSSAEEATKAVTEMN 389
Query: 167 SKDFKG 172
+ +G
Sbjct: 390 GQTIQG 395
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 127/287 (44%), Gaps = 35/287 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID-- 163
+FI L D + L D G + + D+ +G SKGF FV F S E A+ AID
Sbjct: 130 IFIKNLHADIDNKALHDTFSVFGNILSCKIATDEVTGNSKGFGFVHFESDEAAREAIDAI 189
Query: 164 --------------ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
+ KD + K + TN ++I N+ E+EF + + V P
Sbjct: 190 NGMLLNGQEVYVAPHVSRKDRQSKLEEAKANFTN--VYIKNISLETPEQEFEEFFKKVAP 247
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST 269
V ++ L KD + + RGF FV Y +A A + +++ F G V A+ K
Sbjct: 248 -VTSVHLEKDSEG--KLRGFGFVNYETHAGAAKAVEELNGVEF--HGQQLHVGRAQKKYE 302
Query: 270 PDHSA-----------AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG 318
Q L++KNL ++ ++L+E F G +T V ++G
Sbjct: 303 RQQELRRQYEQSKLEKMEKYQGVNLFIKNLDDSIDDERLREEFSPFGTITSVKVMTTENG 362
Query: 319 K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
K + FGF+ ++ A KAI + + + G+ L VA+A+ + +R++
Sbjct: 363 KSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 409
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 127/275 (46%), Gaps = 22/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L SE L D+ PIG V + + +D + S G+A+V F E ++AI+
Sbjct: 40 ASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDYEAGRQAIE 99
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+L KG+ R S+ + L FI N+ K G + + +
Sbjct: 100 KLNYTPIKGQPCRIMWSQRDPSLRKKGSGNIFIKNLHADIDNKALHDTFSVFG-NILSCK 158
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGN----TPTVSWAEPKSTP 270
+ D + ++GF FV + ++ A R+ + + N L+G P VS + +S
Sbjct: 159 IATD-EVTGNSKGFGFVHFESDEAA---REAIDAINGMLLNGQEVYVAPHVSRKDRQSKL 214
Query: 271 DHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAE 329
+ + A + V Y+KN+ T ++ +E F++ VT V GK R FGF++Y
Sbjct: 215 EEAKANFTNV---YIKNISLETPEQEFEEFFKKVAPVTSVHLEKDSEGKLRGFGFVNYET 271
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ A KA+++ E GQ L V A+ + ++ E
Sbjct: 272 HAGAAKAVEELNGVEFHGQQLHVGRAQKKYERQQE 306
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +FI L +E LR+ P G + V V ++G+SKGF FV F + E A +A
Sbjct: 323 QGVNLFIKNLDDSIDDERLREEFSPFGTITSVK-VMTTENGKSKGFGFVCFSTPEEATKA 381
Query: 162 IDELCSKDFKGKTIRCSMSE 181
I E + GK + ++++
Sbjct: 382 ITEKNQQIVAGKPLYVAIAQ 401
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 90 KEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAF 149
K++ +L + + V+I + + E++ + + + V V L KD + G+ +GF F
Sbjct: 208 KDRQSKLEEAKANFTNVYIKNISLETPEQEFEEFFKKVAPVTSVHLEKDSE-GKLRGFGF 266
Query: 150 VAFRSKEVAKRAIDELCSKDFKGKTIRC 177
V + + A +A++EL +F G+ +
Sbjct: 267 VNYETHAGAAKAVEELNGVEFHGQQLHV 294
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 136/301 (45%), Gaps = 31/301 (10%)
Query: 75 VEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVG 134
++D+ K+ A+ SE + ++ + +++G L SE L D+ PIG V +
Sbjct: 17 IQDDQKQAATGSESQ--------SVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIR 68
Query: 135 LVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN--------NRL 186
+ +D + S G+A+V F E ++AI++L KG+ R S+ + +
Sbjct: 69 VCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNI 128
Query: 187 FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQK 246
FI N+ K G + + ++ D S +GF FV + A ++
Sbjct: 129 FIKNLHPDIDNKALYDTFSVFG-DILSSKIATDENGKS--KGFGFVHFEEEGAA---KEA 182
Query: 247 MTSAN-FKLDGN----TPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELF 301
+ + N L+G P +S E S + + A + LYVKN+ TT +Q +ELF
Sbjct: 183 IDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTN---LYVKNINSETTDEQFQELF 239
Query: 302 QRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTN 360
+ G + GK + FGF++Y + A+KA++ E++G+ L V A+ +
Sbjct: 240 AKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNE 299
Query: 361 K 361
+
Sbjct: 300 R 300
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 133/285 (46%), Gaps = 32/285 (11%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L D + L D G++ + D ++G+SKGF FV F + AK AID L
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 166 CSKDFKGKTIRCS-----------MSETN---NRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
G+ I + + ET L++ N+ T+++F+++ GP V
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 246
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ L KD A + +GF FV Y + A + + + + +L+G V A+ K+
Sbjct: 247 -SASLEKD--ADGKLKGFGFVNYEKHEDAVKAVEALNDS--ELNGEKLYVGRAQKKNERM 301
Query: 272 H-----------SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK- 319
H A Q L+VKNL ++ ++L+E F +G +T ++GK
Sbjct: 302 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS 361
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ FGF+ ++ A KAI + + + G+ L VA+A+ + +R++
Sbjct: 362 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 406
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +F+ L +E L + P G + +++ ++G+SKGF FV F + E A +A
Sbjct: 320 QGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKA 378
Query: 162 IDELCSKDFKGKTIRCSMSE 181
I E + GK + ++++
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQ 398
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 136/301 (45%), Gaps = 31/301 (10%)
Query: 75 VEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVG 134
++D+ K+ A+ SE + ++ + +++G L SE L D+ PIG V +
Sbjct: 17 IQDDQKQAATGSESQ--------SVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIR 68
Query: 135 LVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN--------NRL 186
+ +D + S G+A+V F E ++AI++L KG+ R S+ + +
Sbjct: 69 VCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNI 128
Query: 187 FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQK 246
FI N+ K G + + ++ D S +GF FV + A ++
Sbjct: 129 FIKNLHPDIDNKALYDTFSVFG-DILSSKIATDENGKS--KGFGFVHFEEEGAA---KEA 182
Query: 247 MTSAN-FKLDGN----TPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELF 301
+ + N L+G P +S E S + + A + LYVKN+ TT +Q +ELF
Sbjct: 183 IDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTN---LYVKNINSETTDEQFQELF 239
Query: 302 QRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTN 360
+ G + GK + FGF++Y + A+KA++ E++G+ L V A+ +
Sbjct: 240 AKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNE 299
Query: 361 K 361
+
Sbjct: 300 R 300
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 133/285 (46%), Gaps = 32/285 (11%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L D + L D G++ + D ++G+SKGF FV F + AK AID L
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 166 CSKDFKGKTIRCS-----------MSETN---NRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
G+ I + + ET L++ N+ T+++F+++ GP V
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 246
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ L KD A + +GF FV Y + A + + + + +L+G V A+ K+
Sbjct: 247 -SASLEKD--ADGKLKGFGFVNYEKHEDAVKAVEALNDS--ELNGEKLYVGRAQKKNERM 301
Query: 272 H-----------SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK- 319
H A Q L+VKNL ++ ++L+E F +G +T ++GK
Sbjct: 302 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS 361
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ FGF+ ++ A KAI + + + G+ L VA+A+ + +R++
Sbjct: 362 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 406
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +F+ L +E L + P G + +++ ++G+SKGF FV F + E A +A
Sbjct: 320 QGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKA 378
Query: 162 IDELCSKDFKGKTIRCSMSE 181
I E + GK + ++++
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQ 398
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 122/266 (45%), Gaps = 21/266 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L SE L DL PIG V + + +D + S G+A+V F E K+AI+
Sbjct: 47 TSLYVGELDPSVSEALLYDLFSPIGSVASIRVCRDAITKTSLGYAYVNFSDHEAGKQAIE 106
Query: 164 ELCSKDFKGKTIRCSMSET--------NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+L KGK R S+ + +FI N+ + K G + + +
Sbjct: 107 KLNYTPIKGKLCRIMWSQRDPSLRKKGHGNIFIKNLNQDIDNKALFDTFSVFG-NILSSK 165
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGN----TPTVSWAEPKSTPD 271
+ D S +GF FV + + A+ + + L+G P ++ E S +
Sbjct: 166 IATDETGKS--KGFGFVHFEEESAANEAIDALNG--MLLNGQEIYVAPHLTRKERDSQLE 221
Query: 272 HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAER 330
+ A + V YVKN+ TT ++ KE F + G VT V G GK + FGF++Y +
Sbjct: 222 ETKAHFTNV---YVKNIDLETTDEEFKEFFGKIGTVTSVALERGPDGKLKGFGFVNYEDH 278
Query: 331 SSALKAIKDTEKYEIDGQVLEVALAR 356
+ A+KA+++ E Q L V A+
Sbjct: 279 NDAVKAVEELNGAEFKDQELFVGRAQ 304
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 133/289 (46%), Gaps = 33/289 (11%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
HG+ +FI L +D + L D G + + D ++G+SKGF FV F + A A
Sbjct: 134 HGN-IFIKNLNQDIDNKALFDTFSVFGNILSSKIATD-ETGKSKGFGFVHFEEESAANEA 191
Query: 162 IDELCSKDFKGKTIRCS-----------MSETN---NRLFIGNVPKSWTEKEFRKVIEDV 207
ID L G+ I + + ET +++ N+ T++EF++ +
Sbjct: 192 IDALNGMLLNGQEIYVAPHLTRKERDSQLEETKAHFTNVYVKNIDLETTDEEFKEFFGKI 251
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK 267
G V ++ L + P + +GF FV Y ++ A + +++ A FK V A+ K
Sbjct: 252 GT-VTSVALERGPDG--KLKGFGFVNYEDHNDAVKAVEELNGAEFK--DQELFVGRAQKK 306
Query: 268 STPDHSA-----------AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGK 316
S A Q L+VKNL ++ ++L+E F G +T V +
Sbjct: 307 YERIQSLKKQYESTRLEKMAKYQGVNLFVKNLDDSIDDEKLQEEFAPFGNITSVKVMRTE 366
Query: 317 SGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+GK + FGF+ ++ A KAI + + + G+ L VA+A+ + +R++
Sbjct: 367 NGKSKGFGFVCFSSPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 415
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 136/301 (45%), Gaps = 31/301 (10%)
Query: 75 VEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVG 134
++D+ K+ A+ SE + ++ + +++G L SE L D+ PIG V +
Sbjct: 17 IQDDQKQAATGSESQ--------SVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIR 68
Query: 135 LVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN--------NRL 186
+ +D + S G+A+V F E ++AI++L KG+ R S+ + +
Sbjct: 69 VCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNI 128
Query: 187 FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQK 246
FI N+ K G + + ++ D S +GF FV + A ++
Sbjct: 129 FIKNLHPDIDNKALYDTFSVFG-DILSSKIATDENGKS--KGFGFVHFEEEGAA---KEA 182
Query: 247 MTSAN-FKLDGN----TPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELF 301
+ + N L+G P +S E S + + A + LYVKN+ TT +Q +ELF
Sbjct: 183 IDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTN---LYVKNINSETTDEQFQELF 239
Query: 302 QRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTN 360
+ G + GK + FGF++Y + A+KA++ E++G+ L V A+ +
Sbjct: 240 AKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNE 299
Query: 361 K 361
+
Sbjct: 300 R 300
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 133/285 (46%), Gaps = 32/285 (11%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L D + L D G++ + D ++G+SKGF FV F + AK AID L
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 166 CSKDFKGKTIRCS-----------MSETN---NRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
G+ I + + ET L++ N+ T+++F+++ GP V
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 246
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ L KD A + +GF FV Y + A + + + + +L+G V A+ K+
Sbjct: 247 -SASLEKD--ADGKLKGFGFVNYEKHEDAVKAVEALNDS--ELNGEKLYVGRAQKKNERM 301
Query: 272 H-----------SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK- 319
H A Q L+VKNL ++ ++L+E F +G +T ++GK
Sbjct: 302 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS 361
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ FGF+ ++ A KAI + + + G+ L VA+A+ + +R++
Sbjct: 362 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 406
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +F+ L +E L + P G + +++ ++G+SKGF FV F + E A +A
Sbjct: 320 QGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKA 378
Query: 162 IDELCSKDFKGKTIRCSMSE 181
I E + GK + ++++
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQ 398
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 136/301 (45%), Gaps = 31/301 (10%)
Query: 75 VEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVG 134
++D+ K+ A+ SE + ++ + +++G L SE L D+ PIG V +
Sbjct: 17 IQDDQKQAATGSESQ--------SVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIR 68
Query: 135 LVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN--------NRL 186
+ +D + S G+A+V F E ++AI++L KG+ R S+ + +
Sbjct: 69 VCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNI 128
Query: 187 FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQK 246
FI N+ K G + + ++ D S +GF FV + A ++
Sbjct: 129 FIKNLHPDIDNKALYDTFSVFG-DILSSKIATDENGKS--KGFGFVHFEEEGAA---KEA 182
Query: 247 MTSAN-FKLDGN----TPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELF 301
+ + N L+G P +S E S + + A + LYVKN+ TT +Q +ELF
Sbjct: 183 IDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTN---LYVKNINSETTDEQFQELF 239
Query: 302 QRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTN 360
+ G + GK + FGF++Y + A+KA++ E++G+ L V A+ +
Sbjct: 240 AKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNE 299
Query: 361 K 361
+
Sbjct: 300 R 300
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 133/285 (46%), Gaps = 32/285 (11%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L D + L D G++ + D ++G+SKGF FV F + AK AID L
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 166 CSKDFKGKTIRCS-----------MSETN---NRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
G+ I + + ET L++ N+ T+++F+++ GP V
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 246
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ L KD A + +GF FV Y + A + + + + +L+G V A+ K+
Sbjct: 247 -SASLEKD--ADGKLKGFGFVNYEKHEDAVKAVEALNDS--ELNGEKLYVGRAQKKNERM 301
Query: 272 H-----------SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK- 319
H A Q L+VKNL ++ ++L+E F +G +T ++GK
Sbjct: 302 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS 361
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ FGF+ ++ A KAI + + + G+ L VA+A+ + +R++
Sbjct: 362 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 406
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +F+ L +E L + P G + +++ ++G+SKGF FV F + E A +A
Sbjct: 320 QGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKA 378
Query: 162 IDELCSKDFKGKTIRCSMSE 181
I E + GK + ++++
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQ 398
>gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 125/274 (45%), Gaps = 20/274 (7%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSK---E 156
P S +++G L KD +E L +L +G V + + +D + S G+A+V + S +
Sbjct: 19 PLANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQ 78
Query: 157 VAKRAIDELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVG 208
A RA++ L GK +R S + +FI N+ K+ K G
Sbjct: 79 AADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKTIDAKALHDTFSAFG 138
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
+ + ++ D S +G+ FV + + A AD + Q + K++G + + P
Sbjct: 139 K-ILSCKVATDANGVS--KGYGFVHFEDQAAADRAIQTVNQK--KIEGK---IVYVAPFQ 190
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGKRDFGFIHY 327
A + ++VKNLP + +L ++ HGE+T VV K G + FGFI++
Sbjct: 191 KRADRPRARTLYTNVFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKGFGFINF 250
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARPQTNK 361
+ SA K ++ + E+ G+ L A+ +T +
Sbjct: 251 KDAESAAKCVEYLNEREMSGKTLYAGRAQKKTER 284
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 127/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L +D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KG+ +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN + ++L+ELF ++G + ++GK R FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+++ V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTE 275
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 122/278 (43%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N +++ R++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAM 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+I ++ D SR GF FV + + A + +M +++G V A+ K
Sbjct: 219 -SIRVMTDENGKSR--GFGFVSFERHEDAQKAVDEMNGK--EMNGKLMYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I + +E LR+L G + ++ D ++G+S+GF FV+F E A++A+DE+
Sbjct: 194 YIKNFGDEMDDEKLRELFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK +
Sbjct: 253 GKEMNGKLM 261
>gi|281212216|gb|EFA86376.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 562
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 124/270 (45%), Gaps = 16/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
S +++G L D SE L ++ +G V + + +D + S +A++ + + A+RA+D
Sbjct: 8 SSLYVGDLHPDVSESHLFEVFNQVGPVANLRICRDNTTRRSLSYAYINYHNSTDAERALD 67
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L + KGK R S+ + L FI N+ K+ K G + + +
Sbjct: 68 TLNNTPIKGKACRIMWSQRDPSLRKSGIGNIFIKNLDKTVDHKALYDTFSAFG-NILSCK 126
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D S +GF FV Y + A+ + K+ N V KS+ + A
Sbjct: 127 VVTDETNTS--KGFGFVHYESQESAEKAIAKVNGMMI----NNQKVFVGPFKSSKERGAT 180
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
+ +++KNL E+ + +QL +L Q HG++T + + GK + FGF ++ +A
Sbjct: 181 QEVKYTNVFIKNLSEDVSEQQLTDLLQAHGKITNLCIMTDEKGKSKGFGFANFEHADAAK 240
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+++ G+V+ V A+ + + E
Sbjct: 241 GAVENENGKMFSGKVIYVGRAQKKLEREAE 270
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 124/277 (44%), Gaps = 25/277 (9%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI--- 162
+FI L K + L D G + +V D ++ SKGF FV + S+E A++AI
Sbjct: 98 IFIKNLDKTVDHKALYDTFSAFGNILSCKVVTD-ETNTSKGFGFVHYESQESAEKAIAKV 156
Query: 163 -------DELCSKDFKGKTIRCSMSETN-NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTI 214
++ FK R + E +FI N+ + +E++ +++ G + +
Sbjct: 157 NGMMINNQKVFVGPFKSSKERGATQEVKYTNVFIKNLSEDVSEQQLTDLLQAHG-KITNL 215
Query: 215 ELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKL-DGNTPTVSWAEPK----ST 269
++ D + S+ GFA N AD ++ + + N K+ G V A+ K +
Sbjct: 216 CIMTDEKGKSKGFGFA-----NFEHADAAKGAVENENGKMFSGKVIYVGRAQKKLEREAE 270
Query: 270 PDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHY 327
H Q LY+KNL ++ + +L+ F +G +T KV+ S + FGF+ Y
Sbjct: 271 LKHKFETKYQGVNLYIKNLDDSIDSDKLRATFSAYGTITSSKVMRDDKGSSSKGFGFVCY 330
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ A KA+ + + + L VA A+ + +R +
Sbjct: 331 STPDEASKAVAEMHGRMVGSKPLYVAFAQRKDVRRAQ 367
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 128/277 (46%), Gaps = 14/277 (5%)
Query: 97 LALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
+A + +++G L D +E+ L +G V + + +D + S G+A+V F
Sbjct: 3 IAAKYRQASLYVGDLHADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLQLA 62
Query: 157 VAKRAIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVG 208
A++A+D + KGK+IR S+ + L FI N+ +S K + G
Sbjct: 63 DAQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFG 122
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
+ + +++ D RG+AFV + N AD + ++M A K D + K
Sbjct: 123 KILSS-KVMSDDHGS---RGYAFVHFQNQIAADRAIEEMNGALLK-DCRLFVGRFKSRKD 177
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHY 327
A + +Y+KN + ++L E+F ++G+ V SGK + FGF+ +
Sbjct: 178 REAEFQNKAHEFTNVYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGKSKGFGFVSF 237
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A +A+++ +I+GQ+L V A+ + ++ E
Sbjct: 238 DSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAE 274
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 122/279 (43%), Gaps = 36/279 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + + L + G++ ++ D D G S+G+AFV F+++ A RAI+E+
Sbjct: 100 VFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSD-DHG-SRGYAFVHFQNQIAADRAIEEM 157
Query: 166 ---CSKD-------FKGKTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGP 209
KD FK + R +E N+ ++I N ++ +V G
Sbjct: 158 NGALLKDCRLFVGRFKSRKDR--EAEFQNKAHEFTNVYIKNFGDEMDDERLNEVFSKYGK 215
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS- 268
+ +++++ D S+ GF FV + ++ A + ++M + ++G V A+ K+
Sbjct: 216 TL-SVKVMTDSSGKSK--GFGFVSFDSHEAAKRAVEEMNGKD--INGQLLFVGRAQKKAE 270
Query: 269 ----------TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG 318
H Q LY+KNL E ++L+ F G +++V +
Sbjct: 271 RQAELKQMFEQLKHERFRRCQGAKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQEEGR 330
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357
+ FG I ++ A KA+ + + + L +ALA+
Sbjct: 331 SKGFGLICFSSAEEATKAMTEMNGRILGSKPLNIALAQK 369
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 40/184 (21%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ V+I + +E L ++ G+ V ++ D SG+SKGF FV+F S E AKRA++
Sbjct: 190 TNVYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKRAVE 248
Query: 164 ELCSKDFKGKTI----------------------------RCSMSETNNRLFIGNVPKSW 195
E+ KD G+ + RC + +L+I N+ ++
Sbjct: 249 EMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHERFRRCQGA----KLYIKNLDETI 304
Query: 196 TEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLD 255
+++ R+ G +I +K Q R++GF + + + A+ + + MT N ++
Sbjct: 305 DDEKLRREFSSFG----SISRVKVMQEEGRSKGFGLICF---SSAEEATKAMTEMNGRIL 357
Query: 256 GNTP 259
G+ P
Sbjct: 358 GSKP 361
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 135/298 (45%), Gaps = 23/298 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L +E DL ++ PIG+V + + +D S +S G+A+V F+S ++A++
Sbjct: 47 ASLYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVNFQSHADGEKALE 106
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
EL KGK R S+ + L FI N+ + K G + + +
Sbjct: 107 ELNYTPIKGKACRIMWSQRDPSLRRNGSGNIFIKNLHPAIDNKTLHDTFSAFGK-ILSCK 165
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT-----PTVSWAEPKSTP 270
+ D S +GF FV Y + A + + + N L + P ++ + +S
Sbjct: 166 IATDENGNS--KGFGFVHYEESESA---KAAIENVNGMLLNDHEVYVGPHLAKKDRQSKM 220
Query: 271 DHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAE 329
A + V YVKN+ N +L+E F G ++ + +SGK R FGF+++ +
Sbjct: 221 RELIANFTNV---YVKNINLNWDEDKLRETFSPFGTISSIFLSKDESGKSRGFGFVNFEK 277
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFA 387
A+KA+++ +IDGQ L V A+ ++ + + A + GY F
Sbjct: 278 HEDAVKAVEELNNKDIDGQKLYVGRAQKKSERMESLKHQYEAARQEQLNKYQGYNLFV 335
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 131/287 (45%), Gaps = 36/287 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID-- 163
+FI L + L D G++ + D ++G SKGF FV + E AK AI+
Sbjct: 137 IFIKNLHPAIDNKTLHDTFSAFGKILSCKIATD-ENGNSKGFGFVHYEESESAKAAIENV 195
Query: 164 --------------ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
L KD + K + TN +++ N+ +W E + R+ G
Sbjct: 196 NGMLLNDHEVYVGPHLAKKDRQSKMRELIANFTN--VYVKNINLNWDEDKLRETFSPFGT 253
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS- 268
+ +I L KD ++RGF FV + + A + +++ N +DG V A+ KS
Sbjct: 254 -ISSIFLSKDESG--KSRGFGFVNFEKHEDAVKAVEELN--NKDIDGQKLYVGRAQKKSE 308
Query: 269 ---TPDHSAAAASQVKA-------LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG 318
+ H AA Q + L+VKNL ++ +L+E F+ +G +T +G
Sbjct: 309 RMESLKHQYEAARQEQLNKYQGYNLFVKNLDDSIDDAKLEEEFKPYGTITSAKVMLDDAG 368
Query: 319 K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
K + FGF+ Y+ A KAI + + + G+ L VALA+ + +R++
Sbjct: 369 KSKGFGFVCYSSPEEATKAITEMHQRMVAGKPLYVALAQRKEVRRSQ 415
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 76/170 (44%), Gaps = 28/170 (16%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ ++ L + + V++ + + E+ LR+ P G + + L KD +SG+S+GF
Sbjct: 213 KKDRQSKMRELIANFTNVYVKNINLNWDEDKLRETFSPFGTISSIFLSKD-ESGKSRGFG 271
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNN------------------------ 184
FV F E A +A++EL +KD G+ + ++ +
Sbjct: 272 FVNFEKHEDAVKAVEELNNKDIDGQKLYVGRAQKKSERMESLKHQYEAARQEQLNKYQGY 331
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLY 234
LF+ N+ S + + + + G ++ D +++GF FV Y
Sbjct: 332 NLFVKNLDDSIDDAKLEEEFKPYGTITSAKVMLDD---AGKSKGFGFVCY 378
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 82/172 (47%), Gaps = 15/172 (8%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
SET L++G + S TE + +V +G V TI + +D ++ G+A+V + ++A
Sbjct: 43 SETLASLYVGELDPSVTESDLFEVFSPIGQ-VSTIRVCRDA-VSKQSLGYAYVNFQSHAD 100
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
+ + +++ K G + W++ + + + +++KNL K L +
Sbjct: 101 GEKALEELNYTPIK--GKACRIMWSQRDPSLRRNGSG-----NIFIKNLHPAIDNKTLHD 153
Query: 300 LFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVL 350
F G++ ++G + FGF+HY E SA AI++ ++G +L
Sbjct: 154 TFSAFGKILSCKIATDENGNSKGFGFVHYEESESAKAAIEN-----VNGMLL 200
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +F+ L + L + +P G + ++ D D+G+SKGF FV + S E A +A
Sbjct: 329 QGYNLFVKNLDDSIDDAKLEEEFKPYGTITSAKVMLD-DAGKSKGFGFVCYSSPEEATKA 387
Query: 162 IDELCSKDFKGKTIRCSMSE 181
I E+ + GK + ++++
Sbjct: 388 ITEMHQRMVAGKPLYVALAQ 407
>gi|313236676|emb|CBY11933.1| unnamed protein product [Oikopleura dioica]
Length = 1059
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 17/152 (11%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
+P G EVF+G +P+D E+++ + E IG ++E+ L+ D D G+++GF FV F + A
Sbjct: 68 IPTKGCEVFVGKIPRDLFEDEIFPVFEMIGPIYELRLMMDFD-GKNRGFCFVMFTERSHA 126
Query: 159 KRAIDELCSKDF-KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
++AI L + + KG+T+ S N RLF+G +PKS ++E ++ V
Sbjct: 127 RQAISRLNNFEIRKGRTLGVCSSVDNCRLFVGGIPKSRKKEEIMHELKKVT--------- 177
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTS 249
++NRGFAFV Y + A +R+K+ S
Sbjct: 178 ------NKNRGFAFVEYETHKAAAMARRKLVS 203
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 127/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L +D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KG+ +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN + ++L+ELF ++G + ++GK R FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+++ V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTE 275
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 122/278 (43%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N +++ R++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAM 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+I ++ D SR GF FV + + A + +M +++G V A+ K
Sbjct: 219 -SIRVMTDENGKSR--GFGFVSFERHEDAQKAVDEMNGK--EMNGKLMYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I + +E LR+L G + ++ D ++G+S+GF FV+F E A++A+DE+
Sbjct: 194 YIKNFGDEMDDEKLRELFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK +
Sbjct: 253 GKEMNGKLM 261
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 128/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D +RGF FV + + A +Q +T+ N L N V KS +
Sbjct: 130 VVCDDHG---SRGFGFVHFETHEAA---QQAITTMNGMLL-NDRKVFVGHFKSRREREVE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERS 331
A A + +YVKNL + + L++LF R G++ V SG R FGF+++ +
Sbjct: 183 LGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ D E+ G++L V A+ + +++E
Sbjct: 243 EAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSE 275
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 118/280 (42%), Gaps = 40/280 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + +V D D G S+GF FV F + E A++AI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-DHG-SRGFGFVHFETHEAAQQAITTM 158
Query: 166 CSK----------DFKGKTIR------CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
FK + R +M TN +++ N+ E+ + + G
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREVELGARAMEFTN--IYVKNLHVDVDEQGLQDLFSRFGK 216
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK-- 267
+ ++++++D SR GF FV + + A + M ++ G V A+ +
Sbjct: 217 ML-SVKVMRDDSGHSR--GFGFVNFQKHEEAQKAVMDMNGK--EVSGRLLYVGRAQKRVE 271
Query: 268 ---------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGK 316
Q LYVKNL ++ ++L++ F +G +T KV+T G
Sbjct: 272 RQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGH 331
Query: 317 SGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 332 S--KGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALAQ 369
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
E+ K D+L G +++ L +E LR P G + ++ + G SKGF
Sbjct: 281 EQLKQDRLTRY--QGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE--GGHSKGFG 336
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181
FV F S E A +A+ E+ + K + ++++
Sbjct: 337 FVCFSSPEEATKAVTEMNGRILGTKPLYVALAQ 369
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 129/273 (47%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D +RGF FV + + A +Q +++ N L N V KS + A
Sbjct: 130 VVCDDHG---SRGFGFVHFETHEAA---QQAISTMNGMLL-NDRKVFVGHFKSRREREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERS 331
A A+ +YVKNLP + + L++LF + G++ V SG R FGF+++ +
Sbjct: 183 LGARATAFTNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ D ++ G++L V A+ + ++ E
Sbjct: 243 EAQKAVMDMNGMQVSGRLLYVGRAQKRGERQNE 275
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 123/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + L D G + +V D D G S+GF FV F + E A++AI +
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-DHG-SRGFGFVHFETHEAAQQAISTM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ R +E R +++ N+P E+ + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARATAFTNIYVKNLPGHVDERGLQDLFSQFGKML 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWA------- 264
++++++D SR GF FV + + A + M ++ G V A
Sbjct: 219 -SVKVMRDDSGHSR--GFGFVNFEKHEEAQKAVMDMN--GMQVSGRLLYVGRAQKRGERQ 273
Query: 265 -EPKSTPDHSA---AAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
E K +H+ Q LYVKNL ++ ++L++ F +G +T KV+T G S
Sbjct: 274 NELKRRFEHTKQDRLNRCQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + I + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVALAQ 369
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ +E+ +L A + +++ LP E L+DL G++ V +++D DSG S+G
Sbjct: 174 KSRREREAELGARATAFTNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRD-DSGHSRG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
F FV F E A++A+ ++ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVMDMNGMQVSGRLL 261
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 122/275 (44%), Gaps = 23/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L SE L D+ PIG V + + +D + S G+A+V F E K AI+
Sbjct: 43 ASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAIE 102
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+L KG+ R S+ + +FI N+ K + G + + +
Sbjct: 103 KLNYTAIKGRPCRIMWSQRDPSMRKKGSGNIFIKNLHPDIDNKTLYETFSVFG-NILSCK 161
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGN----TPTVSWAEPKSTP 270
+ D S +GF FV + N A R+ + + N L+G P VS + +S
Sbjct: 162 IANDETGKS--KGFGFVHFENEEAA---REAIDAINGMLLNGQEVYVAPHVSKKDRQSKL 216
Query: 271 DHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAE 329
D + A + V YVKNL T + + LF+ +G +T V GK R FGF+ +
Sbjct: 217 DEARANFTNV---YVKNLDLEATEEDFENLFKPYGTITSVALEKDAEGKSRGFGFVDFEN 273
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+KA++ E GQ L V A+ + + E
Sbjct: 274 HEDAVKAVEALNDTEYKGQTLYVGRAQKKYERLQE 308
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 131/287 (45%), Gaps = 36/287 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L D + L + G + + D ++G+SKGF FV F ++E A+ AID +
Sbjct: 133 IFIKNLHPDIDNKTLYETFSVFGNILSCKIAND-ETGKSKGFGFVHFENEEAAREAIDAI 191
Query: 166 ----------------CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
KD + K + TN +++ N+ TE++F + + G
Sbjct: 192 NGMLLNGQEVYVAPHVSKKDRQSKLDEARANFTN--VYVKNLDLEATEEDFENLFKPYGT 249
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK-- 267
+ ++ L KD A ++RGF FV + N+ A + + + +K G T V A+ K
Sbjct: 250 -ITSVALEKD--AEGKSRGFGFVDFENHEDAVKAVEALNDTEYK--GQTLYVGRAQKKYE 304
Query: 268 ---------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG 318
A Q L++KNL ++ ++LKE F G +T ++G
Sbjct: 305 RLQELKKQYQASKLEKLAKYQGINLFIKNLDDSIDDEKLKEEFAPFGTITSARVMRTENG 364
Query: 319 K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
K + FGF+ ++ A +AI + + + G+ L VA+A+ + +R++
Sbjct: 365 KSKGFGFVCFSTPEEATRAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 411
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ +L + + V++ L +A+EED +L +P G + V L KD + G+S+GF
Sbjct: 209 KKDRQSKLDEARANFTNVYVKNLDLEATEEDFENLFKPYGTITSVALEKDAE-GKSRGFG 267
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTI 175
FV F + E A +A++ L ++KG+T+
Sbjct: 268 FVDFENHEDAVKAVEALNDTEYKGQTL 294
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +FI L +E L++ P G + +++ ++G+SKGF FV F + E A RA
Sbjct: 325 QGINLFIKNLDDSIDDEKLKEEFAPFGTITSARVMR-TENGKSKGFGFVCFSTPEEATRA 383
Query: 162 IDELCSKDFKGKTIRCSMSE 181
I E + GK + ++++
Sbjct: 384 ITEKNQQIVAGKPLYVAIAQ 403
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 122/270 (45%), Gaps = 15/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
S +++G L S+ L+ IG V + +D + S G+ +V F + A++A++
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L + G+ IR S+ + L FI N+ KS +KE G + + +
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFG-RILSCK 131
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D S+ G+ FV + CA+ + +K+ N + V PK T S A
Sbjct: 132 IVMDENGQSK--GYGFVHFEKEECAERAIEKIN--NMIIRDRVVYVGKFIPK-TERKSQA 186
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
+ LY+KN P T ++LKE+F GE+ GK + FGF+ + + A
Sbjct: 187 RKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAE 246
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+K EI+G+ L A A+ + ++ E
Sbjct: 247 NAVKTMHGKEIEGRALYCARAQRKEERQEE 276
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 134/287 (46%), Gaps = 33/287 (11%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K +++L D G + +V D++ G+SKG+ FV F +E A+RAI+++
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDEN-GQSKGYGFVHFEKEECAERAIEKI 161
Query: 166 CSK----------DFKGKTIRCSMSET--NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
+ F KT R S + N L+I N P ++ +++ + G + +
Sbjct: 162 NNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGE-IKS 220
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAE-------- 265
++KD + S+ GF FV + + A+ + + M +++G + A+
Sbjct: 221 ACVMKDSEGKSK--GFGFVCFLDPDHAENAVKTMHGK--EIEGRALYCARAQRKEERQEE 276
Query: 266 -----PKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGK 319
K + ++ V LYVKNL +N K+L+E F HG +T V +
Sbjct: 277 LKQRLEKQRAERQSSYMLNVN-LYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRS 335
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGV 366
+ FGF+ +A A +A+ D I + L VALA+ + ++R + +
Sbjct: 336 KGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRAKLI 382
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 124/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAANKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + L+ELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ E+ G+ + V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEMSGKSIFVGRAQKKVERQAE 275
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 126/279 (45%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKAIEKM 158
Query: 166 CS------KDFKGKT---------IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K F G+ + E N ++I N + ++ R++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGEEVDDENLRELFSQFGKT 217
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ ++++++D +++GF FV Y + A+ + ++M ++ G + V A+ K
Sbjct: 218 L-SVKVMRD--CSGKSKGFGFVSYEKHEDANKAVEEMNGK--EMSGKSIFVGRAQKKVER 272
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q LY+KNL + ++L++ F G +T KV+ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 105/238 (44%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E+LR+L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK+I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 124/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAANKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + L+ELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ E+ G+ + V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEMSGKSIFVGRAQKKVERQAE 275
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 126/279 (45%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKAIEKM 158
Query: 166 C------SKDFKGKT---------IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K F G+ + E N ++I N + ++ R++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGEEVDDENLRELFSQFGKT 217
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ ++++++D +++GF FV Y + A+ + ++M ++ G + V A+ K
Sbjct: 218 L-SVKVMRD--CSGKSKGFGFVSYEKHEDANKAVEEMNGK--EMSGKSIFVGRAQKKVER 272
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q LY+KNL + ++L++ F G +T KV+ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 105/238 (44%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E+LR+L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK+I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 122/270 (45%), Gaps = 15/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
S +++G L S+ L+ IG V + +D + S G+ +V F + A++A++
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L + G+ IR S+ + L FI N+ KS +KE G + + +
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFG-RILSCK 131
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D S+ G+ FV + CA+ + +K+ N + V PK T S A
Sbjct: 132 IVMDENGQSK--GYGFVHFEKEECAERAIEKIN--NMIIRDRVVYVGKFIPK-TERKSQA 186
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
+ LY+KN P T ++LKE+F GE+ GK + FGF+ + + A
Sbjct: 187 RKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAE 246
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+K EI+G+ L A A+ + ++ E
Sbjct: 247 NAVKTMHGKEIEGRALYCARAQRKEERQEE 276
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 134/287 (46%), Gaps = 33/287 (11%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K +++L D G + +V D++ G+SKG+ FV F +E A+RAI+++
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDEN-GQSKGYGFVHFEKEECAERAIEKI 161
Query: 166 CSK----------DFKGKTIRCSMSET--NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
+ F KT R S + N L+I N P ++ +++ + G + +
Sbjct: 162 NNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGE-IKS 220
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAE-------- 265
++KD + S+ GF FV + + A+ + + M +++G + A+
Sbjct: 221 ACVMKDSEGKSK--GFGFVCFLDPDHAENAVKTMHGK--EIEGRALYCARAQRKEERQEE 276
Query: 266 -----PKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGK 319
K + ++ V LYVKNL +N K+L+E F HG +T V +
Sbjct: 277 LKQRLEKQRAERQSSYMLNVN-LYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRS 335
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGV 366
+ FGF+ +A A +A+ D I + L VALA+ + ++R + +
Sbjct: 336 KGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRAKLI 382
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 124/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAANKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + L+ELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ E+ G+ + V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEMSGKSIFVGRAQKKVERQAE 275
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 126/279 (45%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKAIEKM 158
Query: 166 CS------KDFKGKT---------IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K F G+ + E N ++I N + ++ R++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGEEVDDENLRELFSQFGKT 217
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ ++++++D +++GF FV Y + A+ + ++M ++ G + V A+ K
Sbjct: 218 L-SVKVMRD--CSGKSKGFGFVSYEKHEDANKAVEEMNGK--EMSGKSIFVGRAQKKVER 272
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q LY+KNL + ++L++ F G +T KV+ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 105/238 (44%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E+LR+L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK+I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|417399827|gb|JAA46899.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 370
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 134/272 (49%), Gaps = 15/272 (5%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
H S +++G LP D +E+ L P+G V + + +D + S G+A+V F + A++
Sbjct: 9 HAS-LYVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGYAYVNFLNLADAQKV 67
Query: 162 IDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDT 213
+D + +GK+IR S+ + L FI N+ +S K + G + +
Sbjct: 68 LDTMNFDMIQGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKMLYEHFSAFGKILSS 127
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHS 273
+++ D + +RG+AFV + + + AD + ++M A K + + K
Sbjct: 128 -KVMSDDKG---SRGYAFVHFQSQSAADRAIEEMNGALLK-NCRLFVGPFKNRKEREAEL 182
Query: 274 AAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSS 332
A++ +Y+KN ++ ++LKE+F ++G++ V SGK + FGF+ + +
Sbjct: 183 QNKANEFTNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSSGKSKGFGFVSFDTHEA 242
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A +A++ +I GQ++ V A+ + ++ E
Sbjct: 243 AQRAVEYMNGKDICGQMVFVGRAQKKAERQAE 274
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 122/283 (43%), Gaps = 43/283 (15%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + + L + G++ ++ D D G S+G+AFV F+S+ A RAI+E+
Sbjct: 100 VFIKNLDRSIDNKMLYEHFSAFGKILSSKVMSD-DKG-SRGYAFVHFQSQSAADRAIEEM 157
Query: 166 CSKDFKG--------KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K K + +E N+ ++I N ++ ++V G V
Sbjct: 158 NGALLKNCRLFVGPFKNRKEREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSQYGKIV 217
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+++++ D S+ GF FV + + A + + M + + G V A+ K+
Sbjct: 218 -SVKVMTDSSGKSK--GFGFVSFDTHEAAQRAVEYMNGKD--ICGQMVFVGRAQKKAERQ 272
Query: 272 HSAAAA-SQVK----------ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKR 320
Q+K LY+KNL E +QL+ F G +++V + +
Sbjct: 273 AELKQMFEQLKRERFGRCRGVKLYIKNLDETIDEEQLRRAFSSFGSMSRVKVMEEEGRSK 332
Query: 321 DFGFIHYAERSSALKAIKDTEKYEIDGQVL-----EVALA-RP 357
FG I ++ A KA+ E++GQVL +ALA RP
Sbjct: 333 GFGLICFSCPEEATKAMA-----EMNGQVLGSKAINIALAQRP 370
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 85/189 (44%), Gaps = 32/189 (16%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
++ KE+ +L + V+I D +E L+++ G++ V ++ D SG+SKG
Sbjct: 173 KNRKEREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTD-SSGKSKG 231
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRC--------------SMSETNNR------- 185
F FV+F + E A+RA++ + KD G+ + M E R
Sbjct: 232 FGFVSFDTHEAAQRAVEYMNGKDICGQMVFVGRAQKKAERQAELKQMFEQLKRERFGRCR 291
Query: 186 ---LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADY 242
L+I N+ ++ E++ R+ G ++ +K + R++GF + + +C +
Sbjct: 292 GVKLYIKNLDETIDEEQLRRAFSSFG----SMSRVKVMEEEGRSKGFGLICF---SCPEE 344
Query: 243 SRQKMTSAN 251
+ + M N
Sbjct: 345 ATKAMAEMN 353
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 134/287 (46%), Gaps = 36/287 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID-- 163
VFI L + L D G + + D + G+SKGF FV F S E A+ AI+
Sbjct: 150 VFIKNLHPAIDNKALHDTFSAFGRILSCKVATD-NFGQSKGFGFVHFESPEAAQAAIENV 208
Query: 164 --------------ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
+ +D + K S TN +++ N+ +E+E +++ G
Sbjct: 209 NGMLLNNNEVYVGPHVARRDRQSKLEEVIKSFTN--VYVKNIDLEASEEEVKELFTPFGT 266
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS- 268
V + L KD A ++RGFAFV Y + A S + + ++K G V A+ KS
Sbjct: 267 -VTSFYLEKD--AEGKSRGFAFVNYEEHEAAVKSIESLNDQDYK--GKKLYVGRAQKKSE 321
Query: 269 -----TPDHSAA-----AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG 318
+ AA SQ L+VKNL ++ ++LKE FQ G ++ V +SG
Sbjct: 322 RLEELKKQYEAARIEKLTKSQGVNLFVKNLDDSIDDEKLKEEFQSFGTISSVKVMIDESG 381
Query: 319 K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
K + FGF+ ++ A +AI + ++ + G+ L VALA+ + +R++
Sbjct: 382 KSKGFGFVSFSSPEEASRAISEMNQHMLAGKPLYVALAQRKDVRRSQ 428
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 143/332 (43%), Gaps = 49/332 (14%)
Query: 52 DAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGL 111
D E+S + S + S TE E E ++S+SE + +++G L
Sbjct: 24 DQESSTVESSTAPSTSA--TESTAEGEQASSSSVSETT--------------ASLYVGEL 67
Query: 112 PKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFK 171
+E L ++ PIG+V + + +D + S G+A+V + + + ++AIDEL K
Sbjct: 68 EPSINEALLFEIFSPIGQVSSIRVCRDALTKRSLGYAYVNYHNVKDGEKAIDELNYSVVK 127
Query: 172 GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSR------ 225
G+ IR S+ + P E I+++ P +D L A R
Sbjct: 128 GQPIRIMWSQRD--------PAKRRNGEGNVFIKNLHPAIDNKALHDTFSAFGRILSCKV 179
Query: 226 -------NRGFAFVLYYNNACADYSRQKMTSANFKLDGNT-----PTVSWAEPKSTPDHS 273
++GF FV + + A + + + N L N P V+ + +S +
Sbjct: 180 ATDNFGQSKGFGFVHFESPEAAQAA---IENVNGMLLNNNEVYVGPHVARRDRQSKLEEV 236
Query: 274 AAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSS 332
+ + V YVKN+ + +++KELF G VT GK R F F++Y E +
Sbjct: 237 IKSFTNV---YVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAEGKSRGFAFVNYEEHEA 293
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+K+I+ + G+ L V A+ ++ + E
Sbjct: 294 AVKSIESLNDQDYKGKKLYVGRAQKKSERLEE 325
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +F+ L +E L++ + G + V ++ D +SG+SKGF FV+F S E A RA
Sbjct: 342 QGVNLFVKNLDDSIDDEKLKEEFQSFGTISSVKVMID-ESGKSKGFGFVSFSSPEEASRA 400
Query: 162 IDELCSKDFKGKTIRCSMSE 181
I E+ GK + ++++
Sbjct: 401 ISEMNQHMLAGKPLYVALAQ 420
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 124/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAANKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E + L+ELF + G+ V SGK + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ E+ G+ + V A+ + ++ E
Sbjct: 243 DANKAVEEMNGKEMSGKSIFVGRAQKKVERQAE 275
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 126/279 (45%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKAIEKM 158
Query: 166 CS------KDFKGKT---------IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K F G+ + E N ++I N + ++ R++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGEEVDDENLRELFSQFGKT 217
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ ++++++D +++GF FV Y + A+ + ++M ++ G + V A+ K
Sbjct: 218 L-SVKVMRD--CSGKSKGFGFVSYEKHEDANKAVEEMNGK--EMSGKSIFVGRAQKKVER 272
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q LY+KNL + ++L++ F G +T KV+ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 105/238 (44%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E+LR+L G+ V +++D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK+I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 140/349 (40%), Gaps = 51/349 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G+V + D ++G SKGF FV + S E A+ AI+ +
Sbjct: 142 IFIKNLDPAIENKTLHDTFSSFGKVLSCKVATD-ENGNSKGFGFVHYESDEAAQAAIENI 200
Query: 166 CSKDFKGKTIRC--------------SMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
G+ I M + +F+ N TE E R++ E GP +
Sbjct: 201 NGMLLNGREIYVGPHLAKKDRESRFQEMIKNYTNVFVKNFDTESTEDELRELFESYGP-I 259
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+I L D + N+GF FV + + A + + + +K G V A+ K+
Sbjct: 260 TSIHLQVDSEG--HNKGFGFVNFAEHDDAVKAVEALNDKEYK--GKPLYVGRAQKKNERV 315
Query: 272 HSAA-----------AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK- 319
H Q L++KNL E+ +L+E F+ G +T ++GK
Sbjct: 316 HELTKKYEADRLEKLQKYQSVNLFIKNLDESIDDARLEEEFKPFGTITSAKVMLDENGKS 375
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLP 379
R FGF+ + A KAI + + + + L VALA+P+ +R++ A
Sbjct: 376 RGFGFVCLSTPEEATKAISEMNQRMVANKPLYVALAQPKAIRRSQLAQQIQARNQMRMQQ 435
Query: 380 HAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGR--GQMPAGMHMVPM 426
AG G QP+ YG+ G +P G + PM
Sbjct: 436 QAGPG-----------------IPNQFVQPIFYGQQPGMLPPGARVPPM 467
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 122/273 (44%), Gaps = 19/273 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L +E DL + PIG V + + +D + S G+ +V F S+ +RA++
Sbjct: 52 ASLYVGELDPTVTESDLYEFFSPIGSVNSIRVCRDAVTKRSLGYGYVNFHSQAAGERALE 111
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
EL + KG R S+ + L FI N+ + K G V + +
Sbjct: 112 ELNYAEIKGVRCRLMWSQRDPSLRRSGSGNIFIKNLDPAIENKTLHDTFSSFG-KVLSCK 170
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D S +GF FV Y ++ A + + + L+G V K D +
Sbjct: 171 VATDENGNS--KGFGFVHYESDEAAQAAIENING--MLLNGREIYVGPHLAKK--DRESR 224
Query: 276 AASQVK---ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERS 331
+K ++VKN +T +L+ELF+ +G +T + G + FGF+++AE
Sbjct: 225 FQEMIKNYTNVFVKNFDTESTEDELRELFESYGPITSIHLQVDSEGHNKGFGFVNFAEHD 284
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+KA++ E G+ L V A+ + + E
Sbjct: 285 DAVKAVEALNDKEYKGKPLYVGRAQKKNERVHE 317
>gi|358334962|dbj|GAA31742.2| polyadenylate-binding protein, partial [Clonorchis sinensis]
Length = 738
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 129/272 (47%), Gaps = 19/272 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L A+E L IG V + +D + S G+ +V F + A+RA++
Sbjct: 1 TSLYVGDLHPLATEALLYSKFSEIGTVLSARICRDLATRNSLGYGYVNFEEPKDAERALE 60
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L + F G+ IR S+ + L FI N+ K+ +K+ +G + + +
Sbjct: 61 NLNYESFMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKTIDQKQLYDTFSFIG-KILSCK 119
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D S +G+ FV + CA+ + +K+ ++ V P S+ SA+
Sbjct: 120 IAMDEHGNS--KGYGFVHFEKEECAERAIEKIN--GMMINDRVVYVGKFIP-SSDRKSAS 174
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT---PPGKSGKRDFGFIHYAERSS 332
+ +YVKN P +TT ++L+++F GE+ P GKS + FGF+ + +
Sbjct: 175 GKLRFNNIYVKNFPPDTTDEKLRDMFSEFGEIKSCCVEKNPEGKS--KGFGFVCFHDPDH 232
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A +A++ EI+G+ L + A+ + ++ E
Sbjct: 233 AEQAVRVMHGKEINGRALYASRAQRKEERQEE 264
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 136/287 (47%), Gaps = 33/287 (11%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K ++ L D IG++ + D + G SKG+ FV F +E A+RAI+++
Sbjct: 91 IFIKNLDKTIDQKQLYDTFSFIGKILSCKIAMD-EHGNSKGYGFVHFEKEECAERAIEKI 149
Query: 166 CSKD------FKGKTIRCSMSETN------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
+ GK I S ++ N +++ N P T+++ R + + G + +
Sbjct: 150 NGMMINDRVVYVGKFIPSSDRKSASGKLRFNNIYVKNFPPDTTDEKLRDMFSEFGE-IKS 208
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPKS---- 268
+ K+P+ +++GF FV +++ D++ Q + + K ++G S A+ K
Sbjct: 209 CCVEKNPEG--KSKGFGFVCFHD---PDHAEQAVRVMHGKEINGRALYASRAQRKEERQE 263
Query: 269 -----TPDHSAAAASQVKA---LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK- 319
A S+ LYVKNL +N ++LKE F +G +T +G+
Sbjct: 264 ELKQRLEKQRAERLSKYVPGVNLYVKNLDDNIDDERLKEAFSHYGPITSAKVMTDANGRS 323
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGV 366
+ FGF+ + + A +A+ + + + L VALA+ + ++R + +
Sbjct: 324 KGFGFVCFTQPEQAARAVTEMNATLVGSKPLYVALAQRKEDRRAKLI 370
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 130/280 (46%), Gaps = 20/280 (7%)
Query: 97 LALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
+A + +++G L D +E+ L +G V + + +D + S G+A+V F
Sbjct: 3 VAAKYRMASLYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQLA 62
Query: 157 VAKRAIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVG 208
A++A+D + KGK IR S+ + L FI N+ KS K + G
Sbjct: 63 DAQKALDTMNFDVVKGKAIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKSLYECFSAFG 122
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
+ + +++ D + +G+AFV + + + AD + ++M K V KS
Sbjct: 123 KILSS-KVMSDDRGS---KGYAFVHFQSQSAADRAIEEMNGKFLK----DCKVFVGRFKS 174
Query: 269 TPDHSAAA---ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGF 324
D A AS+ +Y+KN ++ ++L+E+F +G + V GK R FGF
Sbjct: 175 RKDREAELRNKASEFTNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTNSCGKSRGFGF 234
Query: 325 IHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ + +A KA+++ E++GQ + V A+ + ++ E
Sbjct: 235 VSFDSHEAARKAVEEMNGKEVNGQPIFVGRAQKKVERQAE 274
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 121/277 (43%), Gaps = 34/277 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L + G++ ++ D D G SKG+AFV F+S+ A RAI+E+
Sbjct: 100 VFIKNLDKSIDNKSLYECFSAFGKILSSKVMSD-DRG-SKGYAFVHFQSQSAADRAIEEM 157
Query: 166 CSK----------DFKGKT-----IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K FK + +R SE N ++I N ++ R+V G
Sbjct: 158 NGKFLKDCKVFVGRFKSRKDREAELRNKASEFTN-VYIKNFGDDMDDERLREVFSTYGR- 215
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ +++++ + SR GF FV + ++ A + ++M +++G V A+ K
Sbjct: 216 ILSVKVMTNSCGKSR--GFGFVSFDSHEAARKAVEEMNGK--EVNGQPIFVGRAQKKVER 271
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK 319
Q LY+KNL EN ++L++ F G +++V +
Sbjct: 272 QAELKQMFEQLKKERIRGCQGAKLYIKNLDENIDDEKLRKEFSSFGSISRVKVMQEEGQS 331
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FG I ++ A +A+ + + L +ALA+
Sbjct: 332 KGFGLICFSSSEDAARAMTVMNGRILGSKPLNIALAQ 368
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 122/270 (45%), Gaps = 15/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
S +++G L S+ L+ IG V + +D + S G+ +V F + A++A++
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L + G+ IR S+ + L FI N+ KS +KE G + + +
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFG-RILSCK 131
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D S+ G+ FV + CA+ + +K+ N + V PK T S A
Sbjct: 132 IVMDENGQSK--GYGFVHFEKEECAERAIEKIN--NMIIRDRVVYVGKFIPK-TERKSQA 186
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
+ LY+KN P T ++LKE+F GE+ GK + FGF+ + + A
Sbjct: 187 RKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAE 246
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+K EI+G+ L A A+ + ++ E
Sbjct: 247 NAVKTMHGKEIEGRALYCARAQRKEERQEE 276
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 134/287 (46%), Gaps = 33/287 (11%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K +++L D G + +V D ++G+SKG+ FV F +E A+RAI+++
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVMD-ENGQSKGYGFVHFEKEECAERAIEKI 161
Query: 166 CSK----------DFKGKTIRCSMSET--NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
+ F KT R S + N L+I N P ++ +++ + G + +
Sbjct: 162 NNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGE-IKS 220
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAE-------- 265
++KD + S+ GF FV + + A+ + + M +++G + A+
Sbjct: 221 ACVMKDSEGKSK--GFGFVCFLDPDHAENAVKTMHGK--EIEGRALYCARAQRKEERQEE 276
Query: 266 -----PKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGK 319
K + ++ V LYVKNL +N K+L+E F HG +T V +
Sbjct: 277 LKQRLEKQRAERQSSYMLNVN-LYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRS 335
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGV 366
+ FGF+ +A A +A+ D I + L VALA+ + ++R + +
Sbjct: 336 KGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRAKLI 382
>gi|29841435|gb|AAP06467.1| similar to GenBank Accession Number AJ298278 poly(A) binding
protein in Rattus norvegicus [Schistosoma japonicum]
Length = 307
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 124/271 (45%), Gaps = 15/271 (5%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
S +++G L S+ L+ IG V + +D + +S G+ +V F + A++A+
Sbjct: 12 NSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQAL 71
Query: 163 DELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTI 214
+ L + G+ IR S+ + +FI N+ KS +KE G + +
Sbjct: 72 EVLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGR-ILSC 130
Query: 215 ELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
+++ D S+ G+ FV + CA+ + +K+ N + V PK T S
Sbjct: 131 KIVMDENGQSK--GYGFVHFEKEECAERAIEKIN--NMIIRDRVVYVGKFIPK-TERKSQ 185
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSA 333
A + LYVKN P T ++LKE+F GE+ GK + FGF+ Y + A
Sbjct: 186 ARKVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHA 245
Query: 334 LKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A++ EI+G+VL A A+ + ++ E
Sbjct: 246 ENAVRTMHGKEIEGRVLYCARAQRKEERQEE 276
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 125/286 (43%), Gaps = 33/286 (11%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSK-------- 155
+ +++G L D +E L + P G V + + +D + S G+A+V F+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADVMPTST 70
Query: 156 -----EVAKRAIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRK 202
V +RA+D + KGK IR S+ + L FI N+ KS K
Sbjct: 71 SSSPLTVTERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYD 130
Query: 203 VIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVS 262
G + + +++ D ++G+AFV + AD + +KM N V
Sbjct: 131 TFSAFG-NILSCKVVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVF 182
Query: 263 WAEPKSTPDHSA---AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK 319
KS + A A A + +Y+KN E + LKELF + G+ V SGK
Sbjct: 183 VGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGK 242
Query: 320 -RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ FGF+ Y + A KA+++ EI G+V+ V A+ + ++ E
Sbjct: 243 SKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 288
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 114 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 171
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 172 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 219
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 220 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKVIF 275
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 276 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 335
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 336 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 382
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 187 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 245
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 246 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 305
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 306 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 357
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 358 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 415
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 127/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L +D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KG+ +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ +LK++F ++G + ++GK R FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A +A+ + E++G+++ V A+ + ++TE
Sbjct: 243 DAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTE 275
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 121/278 (43%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + + + + + G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAM 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+I ++ D SR GF FV + + A + +M +++G V A+ K
Sbjct: 219 -SIRVMTDENGKSR--GFGFVSFERHEDAQRAVDEMNGK--EMNGKLIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D ++ L+D+ G + ++ D ++G+S+GF FV+F E A+RA+DE+
Sbjct: 194 YIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQRAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKEMNGKLI 261
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 134/285 (47%), Gaps = 32/285 (11%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L D + L D G++ + D ++G+SKGF FV F + AK AID L
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 166 CSKDFKGKTIRCS-----------MSETN---NRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
G+ I + + ET L++ N+ T+++F+++ GP V
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEKFQEMFAQFGPIV 246
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ L KD A + +GF FV Y N+ A + + + ++ L+G V A+ K+
Sbjct: 247 -SASLEKD--ADGKLKGFGFVNYENHEDAVKAVEALNESD--LNGEKLYVGRAQKKNERM 301
Query: 272 H-----------SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK- 319
H A Q L+VKNL ++ ++L+E F +G +T ++GK
Sbjct: 302 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRSENGKS 361
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ FGF+ ++ A KAI + + + G+ L VA+A+ + +R++
Sbjct: 362 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 406
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 136/301 (45%), Gaps = 31/301 (10%)
Query: 75 VEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVG 134
++D+ K+ A+ SE + ++ + +++G L SE L D+ PIG V +
Sbjct: 17 IQDDQKQAATGSESQ--------SVENSSASLYVGDLEPTVSEAHLYDIFSPIGSVSSIR 68
Query: 135 LVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN--------NRL 186
+ +D + S G+A+V F E ++AID+L KG+ R S+ + +
Sbjct: 69 VCRDAITKTSLGYAYVNFNDHEAGRKAIDQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNI 128
Query: 187 FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQK 246
FI N+ K G + + ++ D S +GF FV + A ++
Sbjct: 129 FIKNLHPDIDNKALYDTFSVFG-DILSSKIATDENGKS--KGFGFVHFEEEGAA---KEA 182
Query: 247 MTSAN-FKLDGN----TPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELF 301
+ + N L+G P +S E S + + A + LYVKN+ TT ++ +E+F
Sbjct: 183 IDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTN---LYVKNINSETTDEKFQEMF 239
Query: 302 QRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTN 360
+ G + GK + FGF++Y A+KA++ + +++G+ L V A+ +
Sbjct: 240 AQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYVGRAQKKNE 299
Query: 361 K 361
+
Sbjct: 300 R 300
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +F+ L +E L + P G + +++ ++G+SKGF FV F + E A +A
Sbjct: 320 QGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRS-ENGKSKGFGFVCFSTPEEATKA 378
Query: 162 IDELCSKDFKGKTIRCSMSE 181
I E + GK + ++++
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQ 398
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 128/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D +RGF FV + A +Q + + N L N V KS + +A
Sbjct: 130 VVCDEHG---SRGFGFVHFETYEAA---QQAINTMNGMLL-NDRKVFVGHFKSRRERAAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +YVKNLP + + L++LF + G++ V SG+ R FGF+++ +
Sbjct: 183 LGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDSSGRSRCFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ E+ G++L + A+ + ++ E
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYASRAQKRVERQNE 275
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 117/276 (42%), Gaps = 32/276 (11%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + +V D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETYEAAQQAINTM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ R +E R +++ N+P E+ + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKML 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
++++++D + R+R F FV + + A + M ++ G S A+ +
Sbjct: 219 -SVKVMRD--SSGRSRCFGFVNFEKHEEAQKAVVHMNGK--EVSGRLLYASRAQKRVERQ 273
Query: 272 HSA-----------AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKR 320
+ + Q LYVKNL ++ +L++ F +G +T S +
Sbjct: 274 NELKRRFEQMKQDRLSRYQGVNLYVKNLDDSIDDGKLRKEFSPYGVITSAKVMTEGSHSK 333
Query: 321 DFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
FGF+ ++ A KA+ + + + L VALA+
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 34/225 (15%)
Query: 69 INTEDAVEDEDKRT-ASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPI 127
INT + + D++ + +E+ +L A + +++ LP D E+ L+DL
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQF 214
Query: 128 GEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS--------M 179
G++ V +++D SG S+ F FV F E A++A+ + K+ G+ + S
Sbjct: 215 GKMLSVKVMRD-SSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQ 273
Query: 180 SETNNR----------------LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
+E R L++ N+ S + + RK G I K
Sbjct: 274 NELKRRFEQMKQDRLSRYQGVNLYVKNLDDSIDDGKLRKEFSPYG----VITSAKVMTEG 329
Query: 224 SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT-VSWAEPK 267
S ++GF FV + + + + + +T N ++ G P V+ A+ K
Sbjct: 330 SHSKGFGFVCF---SSPEEATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|322800628|gb|EFZ21595.1| hypothetical protein SINV_12441 [Solenopsis invicta]
Length = 265
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 75/110 (68%), Gaps = 4/110 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF G +PKD E++L L E G+++++ L+ D SG ++G+AF+ F ++E A+
Sbjct: 156 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQ 215
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG 208
+A+ EL + + K GK+++ ++S N RLF+GN+PKS ++E ++E+ G
Sbjct: 216 QAVRELDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEE---ILEEFG 262
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 19/127 (14%)
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
T +F G +PK E E + E G D + L+ DP + S NRG+AF+ + N A
Sbjct: 158 TGCEVFCGKIPKDMYEDELIPLFEKCGKIWD-LRLMMDPMSGS-NRGYAFITFTNREAAQ 215
Query: 242 YSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELF 301
+ +++ + K P S S P+ L+V N+P+ +K +E+
Sbjct: 216 QAVRELDNHEIK-----PGKSLKVNISVPNLR---------LFVGNIPK---SKGKEEIL 258
Query: 302 QRHGEVT 308
+ G++T
Sbjct: 259 EEFGKLT 265
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LKELF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 125/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L++L G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 120/273 (43%), Gaps = 13/273 (4%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 45 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 104
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KGK R S+ + L FI N+ + K G +
Sbjct: 105 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NIL 163
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + D K
Sbjct: 164 SCKVAQDEFGNSKGYGF---VHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 220
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
+ +Y+KNL + + ++ +++F++ GE+T + GK R FGF++Y+
Sbjct: 221 FEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHD 280
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA A+ + E+ GQ L V A+ + + E
Sbjct: 281 SAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEE 313
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 123/287 (42%), Gaps = 44/287 (15%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + V+I L ++ SEE+ R + E GE+ L +D++ G+S+GF
Sbjct: 214 KKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQE-GKSRGFG 272
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIEDV 207
FV + + + A+ A+DE+ K+ KG+ +L++G K E+E RK E
Sbjct: 273 FVNYSTHDSAQAAVDEMNDKEVKGQ-----------KLYVGRAQKKHEREEELRKQYE-- 319
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKM----------TSANFKLDGN 257
L K + N LY N D +K+ TSA D N
Sbjct: 320 -----AARLEKASKYQGVN------LYVKNLTDDIDDEKLREMFAPYGTITSAKVMRDTN 368
Query: 258 TPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS 317
+ + A + + + Q KE + +V GKS
Sbjct: 369 IERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDDQDKENKKSDKKVL------GKS 422
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ FGF+ ++ A KA+ + + I+G+ L VALA+ + +R++
Sbjct: 423 --KGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDVRRSQ 467
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LKELF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKRVERQTE 275
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 125/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ +
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKRVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L++L G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 122/270 (45%), Gaps = 14/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G LP D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D +RGF FV + + A + M D + + A
Sbjct: 130 VVCDEHG---SRGFGFVHFETHEAAQNAISTMNGMLLN-DRKVFVGHFKSRREREVELGA 185
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERSSAL 334
A + +YVKNL + ++L++LF + G++ V SG R FGF+++ + A
Sbjct: 186 RAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQ 245
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + E+ G++L V A+ + ++ E
Sbjct: 246 KAVVNMNGREVSGRLLYVGRAQKRVERQNE 275
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 119/280 (42%), Gaps = 40/280 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + +V D+ S+GF FV F + E A+ AI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQNAISTM 158
Query: 166 CSK----------DFKGKTIR------CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
FK + R +M TN +++ N+ E+ + + G
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREVELGARAMEFTN--IYVKNLHVDVDEQRLQDLFSQFGK 216
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK-S 268
+ ++++++D SR GF FV + + A + M ++ G V A+ +
Sbjct: 217 ML-SVKVMRDDSGHSR--GFGFVNFEKHEEAQKAVVNMNGR--EVSGRLLYVGRAQKRVE 271
Query: 269 TPDHSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGK 316
+ Q+K LYVKNL ++ ++L++ F +G +T KV+T G
Sbjct: 272 RQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGH 331
Query: 317 SGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 332 S--KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LKELF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 125/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L++L G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LKELF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 125/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L++L G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSQKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LKELF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 125/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + +KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L++L G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 127/285 (44%), Gaps = 32/285 (11%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L D + L D G + + D ++G+SKGF +V F E A AID L
Sbjct: 125 IFIKNLHPDIDNKALYDTFSVFGNILSSKVATD-ETGKSKGFGYVHFEEDESASEAIDAL 183
Query: 166 CSKDFKGKTIRC--------------SMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
G+ I M ++I N+ T+KEF +++ G
Sbjct: 184 NGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFGK-T 242
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
D++ L + P+ N+GF FV + N+ A +++ + FK G V+ A+ K
Sbjct: 243 DSVVLERTPEG--ENKGFGFVNFVNHEDAVKCVEELNNTEFK--GQPLYVNRAQKKYERQ 298
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK- 319
A Q L++KNL ++ K+L+E F +G +T ++GK
Sbjct: 299 QELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTENGKS 358
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ FGF+ ++ A KAI + + + G+ L VA+A+ + +R++
Sbjct: 359 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 403
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 124/276 (44%), Gaps = 25/276 (9%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L SE L D+ PIG V + + +D + S G+A+V F + AK AI+
Sbjct: 35 ASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIE 94
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+L KGK R S+ + L FI N+ K G + + +
Sbjct: 95 KLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFG-NILSSK 153
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT----PTVSWAEPKSTPD 271
+ D S +GF +V + + A + + L+G P +S E +S +
Sbjct: 154 VATDETGKS--KGFGYVHFEEDESASEAIDALNG--MLLNGQEIYVGPHLSKKERESKFE 209
Query: 272 HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVV---TPPGKSGKRDFGFIHYA 328
A + V Y+KN+ TT K+ +EL + G+ VV TP G++ + FGF+++
Sbjct: 210 EMKANFTNV---YIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGEN--KGFGFVNFV 264
Query: 329 ERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+K +++ E GQ L V A+ + ++ E
Sbjct: 265 NHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQE 300
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LKELF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 125/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L++L G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 127/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D+ + S G+A V F+ E A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L F+ N+ +S K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS D A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEEAERAIEKMNGMFL----NDRKVFVGRFKSRRDRQAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KNL E+ ++L++LF R G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + +++G+ + V A+ + ++TE
Sbjct: 243 DARKAVDEMNGKDLNGKQIYVGRAQKKVERQTE 275
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ +++ +L A + V+I L +D +E L+DL G V ++ D +SG+SKG
Sbjct: 174 KSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTD-ESGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
F FV+F E A++A+DE+ KD GK I
Sbjct: 233 FGFVSFERHEDARKAVDEMNGKDLNGKQI 261
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 126/288 (43%), Gaps = 46/288 (15%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+F+ L + + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEEAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ R +E R ++I N+ + ++ + + GP +
Sbjct: 159 NGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D S+ GF FV + + A + +M + L+G V A+ K
Sbjct: 219 -SVKVMTDESGKSK--GFGFVSFERHEDARKAVDEMNGKD--LNGKQIYVGRAQKKVERQ 273
Query: 268 STPDHSAAAASQVK-----------------ALYVKNLPENTTTKQLKELFQRHGEVT-- 308
+ H Q K LYVKNL + ++L++ F G +T
Sbjct: 274 TELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 333
Query: 309 KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 334 KVTMEGGRS--KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 379
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 125/278 (44%), Gaps = 23/278 (8%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
P+ + +++G L +E L +L IG+V + + +D + S G+A+V + S +R
Sbjct: 50 PNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGER 109
Query: 161 AIDELCSKDFKGKTIRCSMSET--------NNRLFIGNVPKSWTEKEFRKVIEDVGPGVD 212
A++EL KGK R S+ + +FI N+ + K G +
Sbjct: 110 ALEELNYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFG-NIL 168
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAEPKSTPD 271
+ ++ +D S RG+ FV Y A+ + + S N L+ V PK
Sbjct: 169 SCKVAQDESGGS--RGYGFVHY---ETAEAANAAIKSVNGMLLNEKKVFVGHHIPKK--- 220
Query: 272 HSAAAASQVKA----LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIH 326
+ ++KA +YVKN+ TT + +ELF+++GE+T + GK R FGF++
Sbjct: 221 DRMSKFEEMKANFTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQEGKVRGFGFVN 280
Query: 327 YAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
Y A KA+ + + Q L V A+ + + E
Sbjct: 281 YIRHEDANKAVDELNDIDFKSQKLYVGRAQKKHEREEE 318
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 103/232 (44%), Gaps = 32/232 (13%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
HG+ +FI L + L D G + + +D +SG S+G+ FV + + E A A
Sbjct: 140 HGN-IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-ESGGSRGYGFVHYETAEAANAA 197
Query: 162 IDELC------SKDFKGKTI----RCS----MSETNNRLFIGNVPKSWTEKEFRKVIEDV 207
I + K F G I R S M +++ N+ T+ EFR++ E
Sbjct: 198 IKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDTETTDDEFRELFEKY 257
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK 267
G + + L +D + + RGF FV Y + A+ + ++ +FK V A+ K
Sbjct: 258 GE-ITSASLARDQEG--KVRGFGFVNYIRHEDANKAVDELNDIDFK--SQKLYVGRAQKK 312
Query: 268 STPDHSA----AAASQVKA-------LYVKNLPENTTTKQLKELFQRHGEVT 308
+ A Q K+ LYVKNL ++ ++L+++F+ +G +T
Sbjct: 313 HEREEELRRQYEAQRQEKSAKYMGVNLYVKNLADDIDDEELRKVFEAYGSIT 364
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 86/364 (23%), Positives = 152/364 (41%), Gaps = 71/364 (19%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + +++ + + ++++ R+L E GE+ L +D++ G+ +GF
Sbjct: 219 KKDRMSKFEEMKANFTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQE-GKVRGFG 277
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG 208
FV + E A +A+DEL DFK + +L++G K +E
Sbjct: 278 FVNYIRHEDANKAVDELNDIDFKSQ-----------KLYVGRAQKKHEREE--------- 317
Query: 209 PGVDTIELIKDPQAPSRNRGFAFV---LYYNNACADYSRQKM----------TSANFKLD 255
EL + +A + + ++ LY N D +++ TSA D
Sbjct: 318 ------ELRRQYEAQRQEKSAKYMGVNLYVKNLADDIDDEELRKVFEAYGSITSAKVMRD 371
Query: 256 GNTPT--VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT----- 308
TP V AE + D A S + + + T +EL ++ VT
Sbjct: 372 -TTPADQVENAEEEKKEDGENEAESSEEKKEDEKKEDGT-----EELTKKLDTVTIGGEK 425
Query: 309 KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYS 368
KV+ GKS + FGF+ ++ A KA+ + + I G+ L VALA+ + ++++ S
Sbjct: 426 KVL---GKS--KGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEVRKSQLEAS 480
Query: 369 CAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIY---GRGQMPAGMHMVP 425
A A G A+ LG QP++ GRGQMP P
Sbjct: 481 IQARNQVRMQQQATAGGIPPQAFMQPQFVLGPNG-----QPIMIPGSGRGQMP-----FP 530
Query: 426 MVLP 429
V+P
Sbjct: 531 QVMP 534
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LKELF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 125/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L++L G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 126/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L DA+E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ + + GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
>gi|115477046|ref|NP_001062119.1| Os08g0492100 [Oryza sativa Japonica Group]
gi|42408771|dbj|BAD10006.1| putative ribonucleoprotein [Oryza sativa Japonica Group]
gi|113624088|dbj|BAF24033.1| Os08g0492100 [Oryza sativa Japonica Group]
gi|215765667|dbj|BAG87364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201366|gb|EEC83793.1| hypothetical protein OsI_29708 [Oryza sativa Indica Group]
gi|222640778|gb|EEE68910.1| hypothetical protein OsJ_27766 [Oryza sativa Japonica Group]
Length = 362
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 97/189 (51%), Gaps = 21/189 (11%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+GGLP+D +E D GE+ + +++DK + + +GF F+ + + V R +D+
Sbjct: 24 KIFVGGLPRDTTEADFVKHFGQYGEIVDSVIMRDKHTSQPRGFGFITYSNPAVVDRVMDD 83
Query: 165 LCSKDFKGKTIRC----------SMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTI 214
+ +F GK + S ++F+G +P++ TE +F+ + GP VD
Sbjct: 84 I--HEFNGKQVEIKRTIPKDSVQSKDFKTKKIFVGGLPQALTEDDFKHFFQKYGPVVDH- 140
Query: 215 ELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANF-KLDGNTPTVSWAEPKST---P 270
++++D Q R+RGF F+++ ++ D + + N L G + AEPK + P
Sbjct: 141 QIMRDHQT-KRSRGFGFIVFSSDQVVD---DLLANGNMIDLAGAKVEIKKAEPKKSSNPP 196
Query: 271 DHSAAAASQ 279
S +AS+
Sbjct: 197 PSSHGSASR 205
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 11/176 (6%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSR 244
++F+G +P+ TE +F K G VD++ +++D S+ RGF F+ Y N A D
Sbjct: 24 KIFVGGLPRDTTEADFVKHFGQYGEIVDSV-IMRDKHT-SQPRGFGFITYSNPAVVD--- 78
Query: 245 QKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRH 304
++ + +G + PK D + + K ++V LP+ T K FQ++
Sbjct: 79 -RVMDDIHEFNGKQVEIKRTIPK---DSVQSKDFKTKKIFVGGLPQALTEDDFKHFFQKY 134
Query: 305 GEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358
G V +++ R FGFI ++ + + ++ G +E+ A P+
Sbjct: 135 GPVVDHQIMRDHQTKRSRGFGFIVFSSDQVVDDLLANGNMIDLAGAKVEIKKAEPK 190
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 114/430 (26%), Positives = 177/430 (41%), Gaps = 68/430 (15%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + + D SG+SKG+ FV + S E A++AI++L
Sbjct: 117 IFIKNLDKAIDHKALHDTFSAFGNILSCKVAVD-SSGQSKGYGFVQYDSDEAAQKAIEKL 175
Query: 166 CSKDFKGKTIRCS---------MSETNNR---LFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
K + M+ R +F+ N+ +S E+E RK+ + G + +
Sbjct: 176 NGMLLNDKQVYVGPFVRKQERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGT-ITS 234
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD-- 271
+ ++KD ++R F FV + N D +R +KLD V A+ KS +
Sbjct: 235 VAVMKDEDG--KSRCFGFVNFEN--AEDAARAVEALNGYKLDNKDWFVGRAQKKSEREME 290
Query: 272 ---------HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKR 320
A SQ LY+KNL ++ + +LKELF +G +T KV+ P K
Sbjct: 291 LKHRFEQSAQEAVDKSQGLNLYLKNLDDSISDDKLKELFSPYGTITSCKVMRDPSGVSKG 350
Query: 321 DFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE-----------GVYSC 369
GF+ ++ A +A+ + + + L VALA+ + +R + S
Sbjct: 351 S-GFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPIAMASS 409
Query: 370 AA---GVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGR--GQMPAGMHMV 424
A ++P G P G F G ++ L AG G QQ ++ G G P +
Sbjct: 410 VAPRMPMYPPGGPGLGQQIFYGQPPPAM---LPPQAGFGYQQQLVPGMRPGGGPMPNFFM 466
Query: 425 PMV---------LPDGRIGYVLQQPGVQMPLPPPRPRRVERG-----PGGRGASSGGSDG 470
PMV LQQ Q P+P + + RG P GRG G G
Sbjct: 467 PMVQQGQQGQRPGGRRGGAVPLQQG--QQPVPLMQQQMFPRGRGYRYPPGRGLPDGAFPG 524
Query: 471 SSGRRYR-PY 479
G + PY
Sbjct: 525 VGGGMFSIPY 534
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 126/270 (46%), Gaps = 15/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L + ++ L DL +G+V V + +D S S G+ +V + + + A RA++
Sbjct: 27 TSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALE 86
Query: 164 ELCSKDFKGKTIRCSMSET--------NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L GK IR S N +FI N+ K+ K G + + +
Sbjct: 87 VLNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFG-NILSCK 145
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D + +++G+ FV Y ++ A + +K+ L+ V K D A
Sbjct: 146 VAVD--SSGQSKGYGFVQYDSDEAAQKAIEKLNG--MLLNDKQVYVGPFVRKQERDM-AV 200
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
++ ++VKNL E+T ++L+++F G +T V + GK R FGF+++ A
Sbjct: 201 DKTRFTNVFVKNLSESTLEEELRKIFGEFGTITSVAVMKDEDGKSRCFGFVNFENAEDAA 260
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A++ Y++D + V A+ ++ + E
Sbjct: 261 RAVEALNGYKLDNKDWFVGRAQKKSEREME 290
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +++ L S++ L++L P G + +++D SG SKG FVAF + E A RA
Sbjct: 307 QGLNLYLKNLDDSISDDKLKELFSPYGTITSCKVMRDP-SGVSKGSGFVAFSTPEEASRA 365
Query: 162 IDELCSKDFKGKTIRCSMSE 181
+ E+ K K + ++++
Sbjct: 366 LSEMNGKMVVSKPLYVALAQ 385
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LKELF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 125/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L++L G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
>gi|432097499|gb|ELK27684.1| Polyadenylate-binding protein 4-like protein [Myotis davidii]
Length = 370
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 124/270 (45%), Gaps = 14/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G LP D +E L +G V + + +D + S G+A+V F A+RA+D
Sbjct: 10 ASLYVGDLPPDVTENMLFLKFSTVGTVLSIRICRDLVTRCSLGYAYVNFLHVADAQRALD 69
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ +G++IR S+ + L FI N+ KS K + G + + +
Sbjct: 70 TMNFDVIQGQSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSVFGKILSS-K 128
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D Q +RG+ FV + N A AD + ++M K D + +
Sbjct: 129 VMCDDQG---SRGYGFVHFQNQAAADRAIEEMNGVLLK-DFRLFVGPFKNRRDREAELQN 184
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
AS+ +Y+KN + ++LKE F +G++ V SGK + FGF+ + +A
Sbjct: 185 KASEFTNIYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAK 244
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A+ EI GQ + V A+ + ++ E
Sbjct: 245 RAVDIVNGREIFGQQVFVGRAQKKAERQAE 274
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 121/273 (44%), Gaps = 13/273 (4%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 46 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 105
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KGK R S+ + L FI N+ + K G +
Sbjct: 106 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 164
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + D K
Sbjct: 165 SCKVAQDEFGNSKGYGF---VHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 221
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
+ +Y+KN+ ++ T ++ +ELF++ GE+T + GK R FGF++++
Sbjct: 222 FEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHE 281
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA A+ + + EI Q L V A+ + + E
Sbjct: 282 SAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEE 314
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 131/294 (44%), Gaps = 49/294 (16%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + V+I + +D +EE+ R+L E GE+ L +D++ G+S+GF
Sbjct: 215 KKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GKSRGFG 273
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIEDV 207
FV F + E A+ A+DE+ K+ + +L++G K E+E RK E
Sbjct: 274 FVNFSTHESAQAAVDEMNEKEIR-----------TQKLYVGRAQKKHEREEELRKQYE-- 320
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKM----------TSANFKLDGN 257
L K + N LY N D +K+ TSA D N
Sbjct: 321 -----AARLEKASKYQGVN------LYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDTN 369
Query: 258 TPTVSWAEP-------KSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV 310
E ++T ++ ++ KA + P ++ ++ ++ + + +
Sbjct: 370 IERTQTPESDKEKENKEATKENEKESSEAEKAEKTEEKPADSGDEKKEDKESKKADKKGL 429
Query: 311 VTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
GKS + FGF+ ++ A KA+ + + ++G+ L VALA+ + +R++
Sbjct: 430 ----GKS--KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 477
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 100/405 (24%), Positives = 161/405 (39%), Gaps = 88/405 (21%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + V++ + +D ++E+ R+L E GE+ L +D +SG+S+GF
Sbjct: 220 KKDRQSKFEEMKANFTNVYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFG 279
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIEDV 207
FV F S E A A+D L KDFK + +L++G K E+E RK E
Sbjct: 280 FVNFTSHESAAAAVDNLNEKDFKSQ-----------KLYVGRAQKKHEREEELRKQYE-- 326
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK 267
IE Q + LY N D +K+ F G +
Sbjct: 327 ---AARIEKASKYQGVN--------LYIKNLSDDIDDEKLRDL-FSGYGTITSAKVMRDN 374
Query: 268 STPDHSAAAASQVKALYVKNLP---------ENTTTKQLKELFQRHGEVTKVVTPPGKSG 318
+ S+ + + K+ +N P E TK KE + K + GKS
Sbjct: 375 LAAESSSDSEKEAKSEGKENEPPEESKDEAAEKAETKDTKEAKTESKKADKKLL--GKS- 431
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAA------- 371
+ FGF+ ++ A KA+ + + ++G+ L VALA+ + +R++ S A
Sbjct: 432 -KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQ 490
Query: 372 -GVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPD 430
+G+P +Q P+ YG GQ LP+
Sbjct: 491 QAAAAAGMPQ-----------------------PFMQPPVFYGPGQQ--------NFLPN 519
Query: 431 GRIGYVLQQPGVQMPLPPPRPRRVERGPGGRGASSGGSDGSSGRR 475
R G QQPG+ +P + PGGR G G G R
Sbjct: 520 QRGGMPFQQPGMVIP----------QMPGGRHGQFSGFPGQQGGR 554
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 122/274 (44%), Gaps = 14/274 (5%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 51 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 110
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KG+ R S+ + L FI N+ + K G +
Sbjct: 111 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 169
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + D K
Sbjct: 170 SCKVAQDEFGNSKGYGF---VHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSK 226
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGK-RDFGFIHYAER 330
+ +YVKN+ ++TT ++ +ELF++ GE+T + +SGK R FGF+++
Sbjct: 227 FEEMKANFTNVYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFGFVNFTSH 286
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA A+ + + + Q L V A+ + + E
Sbjct: 287 ESAAAAVDNLNEKDFKSQKLYVGRAQKKHEREEE 320
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIKKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LKELF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVEDEDKRTASI-----------SEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E K+ + + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIKKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L++L G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIKKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 121/273 (44%), Gaps = 13/273 (4%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 46 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 105
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KGK R S+ + L FI N+ + K G +
Sbjct: 106 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 164
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + D K
Sbjct: 165 SCKVAQDEFGNSKGYGF---VHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 221
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
+ +Y+KN+ ++ T ++ +ELF++ GE+T + GK R FGF++++
Sbjct: 222 FEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHE 281
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA A+ + + EI Q L V A+ + + E
Sbjct: 282 SAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEE 314
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 131/294 (44%), Gaps = 49/294 (16%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + V+I + +D +EE+ R+L E GE+ L +D++ G+S+GF
Sbjct: 215 KKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GKSRGFG 273
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIEDV 207
FV F + E A+ A+DE+ K+ + +L++G K E+E RK E
Sbjct: 274 FVNFSTHESAQAAVDEMNEKEIR-----------TQKLYVGRAQKKHEREEELRKQYE-- 320
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKM----------TSANFKLDGN 257
L K + N LY N D +K+ TSA D N
Sbjct: 321 -----AARLEKASKYQGVN------LYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDTN 369
Query: 258 TPTVSWAEP-------KSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV 310
E ++T ++ ++ KA + P ++ ++ ++ + + +
Sbjct: 370 IERTQTPESDKEKENKEATKENEKESSEAEKAEKTEEKPADSGDEKKEDKESKKADKKGL 429
Query: 311 VTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
GKS + FGF+ ++ A KA+ + + ++G+ L VALA+ + +R++
Sbjct: 430 ----GKS--KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 477
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 132/287 (45%), Gaps = 36/287 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID-- 163
+FI L D + L D G + + D ++G S+GF FV F E AK AID
Sbjct: 132 IFIKNLHPDIDNKALHDTFSVFGNILSCKIATD-EAGNSRGFGFVHFEDDEAAKEAIDAI 190
Query: 164 --------------ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
+ KD + K + TN +++ N+ ++EF + VGP
Sbjct: 191 NGMLLNGQEVYVAQHVSKKDRQSKLDEAKANFTN--VYVKNIHPDTGDEEFEEFFTKVGP 248
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS- 268
+ + L KD + + RGF FV Y N+ A + +++ +FK G T V A+ K
Sbjct: 249 -ITSAHLEKDNEG--KLRGFGFVNYENHNDAAKAVEELNETDFK--GQTLHVGRAQKKHE 303
Query: 269 -----TPDHSAAAASQVKA-----LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG 318
+ A +++ L+VKNL + ++L+E F +G +T V ++G
Sbjct: 304 RLQELKKQYEAFRLEKLEKYQGVNLFVKNLDDTIDDQKLEEEFAPYGTITSVKVMRSENG 363
Query: 319 K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
K + FGF+ ++ A KAI + + + G+ L VA+A+ + +R++
Sbjct: 364 KSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 410
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 133/302 (44%), Gaps = 23/302 (7%)
Query: 75 VEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVG 134
++DE ++ + + +E E + + +++G L SE L D+ PIG V +
Sbjct: 17 IQDEPQQNVAPASNEPESQK----VETSSASLYVGELDPSVSEALLYDIFSPIGSVSSIR 72
Query: 135 LVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN--------NRL 186
+ +D + S G+A+V F E K AI++L KG R S+ + +
Sbjct: 73 VCRDAITKTSLGYAYVNFNDHEAGKTAIEKLNYAPIKGVPCRIMWSQRDPSMRKKGSGNI 132
Query: 187 FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQK 246
FI N+ K G + + ++ D S RGF FV + ++ A ++
Sbjct: 133 FIKNLHPDIDNKALHDTFSVFG-NILSCKIATDEAGNS--RGFGFVHFEDDEAA---KEA 186
Query: 247 MTSANFKLDGNTPTVSWAEPKSTPDHSAA---AASQVKALYVKNLPENTTTKQLKELFQR 303
+ + N L N V A+ S D + A + +YVKN+ +T ++ +E F +
Sbjct: 187 IDAINGML-LNGQEVYVAQHVSKKDRQSKLDEAKANFTNVYVKNIHPDTGDEEFEEFFTK 245
Query: 304 HGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR 362
G +T GK R FGF++Y + A KA+++ + + GQ L V A+ + +
Sbjct: 246 VGPITSAHLEKDNEGKLRGFGFVNYENHNDAAKAVEELNETDFKGQTLHVGRAQKKHERL 305
Query: 363 TE 364
E
Sbjct: 306 QE 307
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +F+ L ++ L + P G + V +++ ++G+SKGF FV F + E A +A
Sbjct: 324 QGVNLFVKNLDDTIDDQKLEEEFAPYGTITSVKVMRS-ENGKSKGFGFVCFSTPEEATKA 382
Query: 162 IDELCSKDFKGKTIRCSMSE 181
I E + GK + ++++
Sbjct: 383 ITEKNQQIVAGKPLYVAIAQ 402
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 137/318 (43%), Gaps = 31/318 (9%)
Query: 61 SPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDL 120
+P NG+ INT + T + + P+ + +++G L +E L
Sbjct: 20 APATNGNQINTAVPAGGDIGETPTSAAPTNAN--------PNSASLYVGELDPSVTEAML 71
Query: 121 RDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180
+L IG+V + + +D + S G+A+V + S +RA++EL KGK R S
Sbjct: 72 FELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSAADGERALEELNYTLIKGKPCRIMWS 131
Query: 181 ETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFV 232
+ + L FI N+ + K G + + ++ D S +G+ FV
Sbjct: 132 QRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NILSCKVAVDEHGNS--KGYGFV 188
Query: 233 LYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAEPKSTPDHSAAAASQVKA----LYVKN 287
Y +D + Q + S N L+ V PK + ++KA +YVKN
Sbjct: 189 HY---ETSDAANQAIKSVNGMLLNEKKVFVGHHIPKK---DRMSKFEEMKANFTNIYVKN 242
Query: 288 LPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEID 346
+ TT + +ELF+++G++T GK R FGF+++ A KA+ + +
Sbjct: 243 IDAETTDDEFRELFEKYGQITSASLAHDDQGKVRGFGFVNFIRHEDAAKAVDELNDLDFK 302
Query: 347 GQVLEVALARPQTNKRTE 364
GQ L V A+ + + E
Sbjct: 303 GQKLYVGRAQKKHEREEE 320
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 96/228 (42%), Gaps = 31/228 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + L D G + + D + G SKG+ FV + + + A +AI +
Sbjct: 145 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAVD-EHGNSKGYGFVHYETSDAANQAIKSV 203
Query: 166 C------SKDFKGKTI----RCS----MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G I R S M +++ N+ T+ EFR++ E G +
Sbjct: 204 NGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDAETTDDEFRELFEKYGQ-I 262
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ L D Q + RGF FV + + A + ++ +FK G V A+ K +
Sbjct: 263 TSASLAHDDQG--KVRGFGFVNFIRHEDAAKAVDELNDLDFK--GQKLYVGRAQKKHERE 318
Query: 272 -----------HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT 308
+A Q LYVKNL + ++L+++F+ +G +T
Sbjct: 319 EELRKQYEAQRQEKSAKYQGVNLYVKNLADEIDDEELRKIFEPYGAIT 366
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 127/274 (46%), Gaps = 14/274 (5%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 55 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 114
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KG+ R S+ + L FI N+ + K G +
Sbjct: 115 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 173
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + + K
Sbjct: 174 SCKVAQDEYGNSKGYGF---VHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSK 230
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGK-RDFGFIHYAER 330
+ +YVKN+ ++ T ++ + LF+++GE+T ++ ++GK R FGF+++++
Sbjct: 231 FEEMKANFTNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKSRGFGFVNFSDH 290
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A A++ +YE+ GQ L V A+ + + E
Sbjct: 291 EAASAAVEGLNEYELKGQKLYVGRAQKKHEREEE 324
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 98/409 (23%), Positives = 167/409 (40%), Gaps = 62/409 (15%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + +++ + +D ++E+ R L E GE+ L +D ++G+S+GF
Sbjct: 224 KKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKSRGFG 283
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIEDV 207
FV F E A A++ L + KG+ +L++G K E+E RK E
Sbjct: 284 FVNFSDHEAASAAVEGLNEYELKGQ-----------KLYVGRAQKKHEREEELRKQYE-- 330
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTV-----S 262
IE Q + LY N D +K+ F GN + +
Sbjct: 331 ---AARIEKASKYQGVN--------LYIKNLSDDIDDEKLREL-FSSYGNITSAKVMREA 378
Query: 263 WAEPKSTPDHSAAAASQVKALYVKNLPEN---TTTKQLKELFQRHGEVTKVVTPPGKSGK 319
++ + + A + + PE+ T + + E + E T+ T K+ K
Sbjct: 379 ISDVPADAEKDKEADKEKAKKETGDKPEDKAETKSDEKSEDKSKSEEKTEGKTDGAKTEK 438
Query: 320 RD------FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGV 373
+ FGF+ ++ A KA+ + + + G+ L VALA+ + ++++ S A
Sbjct: 439 KHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLEASIQA-- 496
Query: 374 HPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYG--RGQMPAGMH-MVPMVLPD 430
+ + + AG A + V GA QQ + G RG AG MV +P
Sbjct: 497 -RNTIRQQQVAAAAGMAQPFMQP--AVFYGAPGQQGFLPGAQRGMQFAGQAGMVMPGMPG 553
Query: 431 GRIGYVLQQPGVQ--------MPLPPPRPRRVERGPGGRGASSGGSDGS 471
GR G Q PG Q PLPP GG+G G G+
Sbjct: 554 GRPGQFAQFPGQQGGRGMNPNQPLPP------NFAMGGQGIPMGAMQGA 596
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 118/270 (43%), Gaps = 16/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
S +++G L +E L + IG V + + +D + S G+A+V F+S A AID
Sbjct: 37 SSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSPNDAAHAID 96
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L + GK IR S+ + +FI N+ K+ K G + + +
Sbjct: 97 VLNFQVINGKPIRVLYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGT-ITSAK 155
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D Q S +G+ FV + A + + ++ N V + + S
Sbjct: 156 VAMDGQGNS--KGYGFVQFETQEAAQAAIDNVNG----MELNDKQVYVGPFQRRAERSNT 209
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
++ +YVKNL EN + ++L+E F HG VT V + GK + FGF+ Y E A
Sbjct: 210 GEAKFNNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMRDEEGKSKGFGFVCYEEPEGAA 269
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A++ + Y D + V A+ + + E
Sbjct: 270 AAVEKLDGYTEDEKTWVVCRAQKKAEREAE 299
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 132/303 (43%), Gaps = 41/303 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + + D G SKG+ FV F ++E A+ AID +
Sbjct: 127 IFIKNLDKAIDNKALLDTFAQFGTITSAKVAMD-GQGNSKGYGFVQFETQEAAQAAIDNV 185
Query: 166 CSKDFKGKTI-------RCSMSETN----NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTI 214
+ K + R S T N +++ N+ ++ ++++ R+ + G V +
Sbjct: 186 NGMELNDKQVYVGPFQRRAERSNTGEAKFNNVYVKNLSENLSDEKLREKFAEHG-AVTSC 244
Query: 215 ELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
+++D + S+ GF FV Y A + +K+ + D T V A+ K+ +
Sbjct: 245 VIMRDEEGKSK--GFGFVCYEEPEGAAAAVEKLDG--YTEDEKTWVVCRAQKKAERE--- 297
Query: 275 AAASQVKA-----------------LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS 317
+++KA LY+KNL + T ++L+ELF+ G +T S
Sbjct: 298 ---AELKAKFDQERRERMEKMAGANLYIKNLEDGTDDEKLRELFKEFGTITSCRVMRDAS 354
Query: 318 G-KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPS 376
G R F+ ++ A +A+ + + + L VALA+ + +R A + +
Sbjct: 355 GVSRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQRKEERRMRLQAQFAQRMPGA 414
Query: 377 GLP 379
G+P
Sbjct: 415 GMP 417
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 76 EDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGL 135
E E + A ++ +E+ +++ G+ ++I L +E LR+L + G + +
Sbjct: 295 EREAELKAKFDQERRERMEKM-----AGANLYIKNLEDGTDDEKLRELFKEFGTITSCRV 349
Query: 136 VKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181
++D SG S+G AFVAF S + A RA+ E+ K K + ++++
Sbjct: 350 MRDA-SGVSRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQ 394
>gi|365760982|gb|EHN02660.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 466
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 133/285 (46%), Gaps = 32/285 (11%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L D + L D G++ + D ++G+SKGF FV F + AK AID L
Sbjct: 17 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 75
Query: 166 CSKDFKGKTIRCS-----------MSETN---NRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
G+ I + + ET L++ N+ T+++F+ + GP V
Sbjct: 76 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQDLFIQFGPIV 135
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ L KD A + +GF FV Y N+ A + + + ++ L+G V A+ K+
Sbjct: 136 -SASLEKD--ADGKLKGFGFVNYENHEDAVKAVEALNESD--LNGEKLYVGRAQKKNERM 190
Query: 272 H-----------SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK- 319
H A Q L+VKNL ++ ++L+E F +G +T ++GK
Sbjct: 191 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFTPYGTITSAKVMRTENGKS 250
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ FGF+ ++ A KAI + + + G+ L VA+A+ + +R++
Sbjct: 251 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 295
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 90 KEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAF 149
KE+ QL H + +++ + + ++E +DL G + L KD D G+ KGF F
Sbjct: 94 KERDSQLEETKAHYTNLYVKNINSETTDEQFQDLFIQFGPIVSASLEKDAD-GKLKGFGF 152
Query: 150 VAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNN 184
V + + E A +A++ L D G+ + ++ N
Sbjct: 153 VNYENHEDAVKAVEALNESDLNGEKLYVGRAQKKN 187
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 123/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
S +++G L D +E L ++ PIG + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S + +FI N+ S K G + + +
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFG-SILSSK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ + +RGF FV + + A QK + + N V KS A
Sbjct: 130 VVYNEHG---SRGFGFVHFETHEAA----QKAINTMNGMLLNDRKVFVGHFKSRQKREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A +YVKNL + + L++LF + G+ V +G+ R FGFI++ +
Sbjct: 183 LGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ E+ GQ+L V A+ + ++ E
Sbjct: 243 EAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNE 275
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 116/278 (41%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + +V ++ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTM 158
Query: 166 CSK----------DFKGKTIR------CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
FK + R ++ TN +++ N+ E+ + + G
Sbjct: 159 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTN--IYVKNLRVDMDEQGLQDLFSQFGK 216
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST 269
++++++D SR GF F+ + + A + M ++ G V A+ ++
Sbjct: 217 -TQSVKVMRDSNGQSR--GFGFINFEKHEEAQKAVDHMNGK--EVSGQLLYVGRAQKRAE 271
Query: 270 PDHSAAAA-SQVKA----------LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG 318
+ Q+K LYVKNL ++ +LKE+F +G +T S
Sbjct: 272 RQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESSH 331
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
>gi|70947056|ref|XP_743180.1| polyadenylate-binding protein [Plasmodium chabaudi chabaudi]
gi|56522555|emb|CAH74716.1| polyadenylate-binding protein, putative [Plasmodium chabaudi
chabaudi]
Length = 629
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 123/263 (46%), Gaps = 21/263 (7%)
Query: 99 LPPHGS--EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
+PP S +++G L +D +E L ++ +G V + + +D + +S G+A+V + +
Sbjct: 9 MPPSFSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLA 68
Query: 157 VAKRAIDELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVG 208
A+RA+D L + KG+ R S + +F+ N+ K+ K G
Sbjct: 69 DAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFG 128
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
+ + ++ D S+N G FV Y + A + +K+ +L V KS
Sbjct: 129 -NILSCKVATDEFGKSKNYG--FVHYEDEESAKEAIEKVNG--MQLGSKNVYVGHFIKKS 183
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYA 328
A ++ LYVKN P+ T LKELF +GE+T ++ + R F FI+Y+
Sbjct: 184 ---ERATNDTKFTNLYVKNFPDTVTEAHLKELFSPYGEITSMIV-KSDNKNRKFCFINYS 239
Query: 329 ERSSALKAIKDTEKYEI--DGQV 349
+ SA A+++ +I DG++
Sbjct: 240 DADSARNAMENLNGKKITEDGKI 262
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G ++I L ++ L++L EP G + ++KD D +SKGF FV F + E A +A+
Sbjct: 399 GVNLYIKNLDDSMDDQTLKELFEPYGTITSAKVMKD-DKDQSKGFGFVCFGTHEEANKAV 457
Query: 163 DELCSKDFKGKTIRCSMSE 181
E+ K GK + ++E
Sbjct: 458 TEMHLKIINGKPLYVGLAE 476
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGKRDFGFIHYAERSSALKAIKDTE 341
LY+KNL ++ + LKELF+ +G +T V K + FGF+ + A KA+ +
Sbjct: 402 LYIKNLDDSMDDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMH 461
Query: 342 KYEIDGQVLEVALA 355
I+G+ L V LA
Sbjct: 462 LKIINGKPLYVGLA 475
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
S +++G L D +E L ++ PIG + + + +D + S G+A++ F+ A+RA+D
Sbjct: 74 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 133
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S + +FI N+ S K G + + +
Sbjct: 134 TMNFEMIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFG-SILSSK 192
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ + +RGF FV + + A QK + + N V KS A
Sbjct: 193 VVYNEHG---SRGFGFVHFETHEAA----QKAINTMNGMLLNDRKVFVGHFKSRQKREAE 245
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A +YVKNL + + L++LF + G++ V +G+ R FGF+++ +
Sbjct: 246 LGARALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDSNGQSRGFGFVNFEKHE 305
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ E+ GQ+L V A+ + +++E
Sbjct: 306 EAQKAVDHMNGKEVRGQLLYVGRAQKRAERQSE 338
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 113/276 (40%), Gaps = 32/276 (11%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + +V ++ S+GF FV F + E A++AI+ +
Sbjct: 164 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTM 221
Query: 166 CSKDFKGKTIRCSMSETNNR--------------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
+ + ++ + +++ N+ E+ + + G +
Sbjct: 222 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTNVYVKNLHMDMDEQGLQDLFSQFGK-M 280
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
++++++D SR GF FV + + A + M + G V A+ ++
Sbjct: 281 QSVKVMRDSNGQSR--GFGFVNFEKHEEAQKAVDHMNGKEVR--GQLLYVGRAQKRAERQ 336
Query: 272 HSAAA-ASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKR 320
QVK LYVKNL ++ ++LKE+F +G +T S +
Sbjct: 337 SELKRRFEQVKQERQNRYQGVNLYVKNLDDSINDERLKEVFSAYGVITSAKVMTESSHSK 396
Query: 321 DFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
FGF+ ++ A KA+ + + + L VALA+
Sbjct: 397 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 432
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 141/302 (46%), Gaps = 22/302 (7%)
Query: 76 EDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGL 135
E D ++S+ D E+ + + + + +++G L +E L ++ PIG+V + +
Sbjct: 39 ESSDATSSSVPADSAEEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRV 98
Query: 136 VKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN--------NRLF 187
+D S +S G+A+V + E ++AI+EL +G+ R S+ + +F
Sbjct: 99 CRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIF 158
Query: 188 IGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKM 247
I N+ + K G + ++++ D S+ F FV Y A + +
Sbjct: 159 IKNLHPAIDNKALHDTFSAFGK-ILSVKVATDDLGQSK--CFGFVHYETEEAAQAA---I 212
Query: 248 TSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKA----LYVKNLPENTTTKQLKELFQR 303
S N L N V + S D + ++KA +YVKN+ T K+ +ELF
Sbjct: 213 ESVNGMLL-NDREVYVGKHVSKKDRESKL-EEMKANYTNIYVKNIDLAYTEKEFEELFAP 270
Query: 304 HGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR 362
G++T + GK + FGF+++ E +A KA+++ EI+GQ + V A+ + +R
Sbjct: 271 FGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQ-KKRER 329
Query: 363 TE 364
TE
Sbjct: 330 TE 331
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 96/387 (24%), Positives = 162/387 (41%), Gaps = 80/387 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID-- 163
+FI L + L D G++ V + D D G+SK F FV + ++E A+ AI+
Sbjct: 157 IFIKNLHPAIDNKALHDTFSAFGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIESV 215
Query: 164 --------------ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
+ KD + K + TN +++ N+ ++TEKEF ++ G
Sbjct: 216 NGMLLNDREVYVGKHVSKKDRESKLEEMKANYTN--IYVKNIDLAYTEKEFEELFAPFGK 273
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST 269
+ +I L KD A +++GF FV + + A + +++ +++G V A+ K
Sbjct: 274 -ITSIYLEKD--AEGKSKGFGFVNFEEHEAAAKAVEELNDK--EINGQKIYVGRAQKKR- 327
Query: 270 PDHSAAAASQVKA-------------LYVKNLPENTTTKQLKELFQRHGEVTK---VVTP 313
+ + Q +A L+VKNL E +++L+E F+ G +T +V
Sbjct: 328 -ERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDD 386
Query: 314 PGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGV 373
GKS + FGF+ ++ A KAI + + ++G+ L VALA+ + +R++ A
Sbjct: 387 AGKS--KGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQARN 444
Query: 374 HPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYG-RGQMPAGMHMVPMVLPDGR 432
A G G PM YG +G P P+GR
Sbjct: 445 QMRMQNAAAAGGLPGQ----------------FMPPMFYGQQGFFP----------PNGR 478
Query: 433 IGYVLQQPGVQMPLPPPRPRRVERGPG 459
P P P P+ + RG G
Sbjct: 479 ---------GNAPFPGPNPQMMMRGRG 496
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 3/152 (1%)
Query: 30 LDDDGEVGRDGNVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDE 89
L+ D E G N E+ E A+ +E NG I A + ++ + E
Sbjct: 279 LEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYE 338
Query: 90 KEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAF 149
+ ++L G +F+ L + E L + +P G + ++ D D+G+SKGF F
Sbjct: 339 AVRLEKLSKY--QGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVD-DAGKSKGFGF 395
Query: 150 VAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181
V F + E A +AI E+ + GK + ++++
Sbjct: 396 VCFSTPEEATKAITEMNQRMVNGKPLYVALAQ 427
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 133/310 (42%), Gaps = 20/310 (6%)
Query: 65 NGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLC 124
NG+ INT A E + +E PH + +++G L +E L +L
Sbjct: 21 NGTTINTNVATE------GAADGNETPNSAAPTNAQPHSASLYVGELDPSVTEAMLFELF 74
Query: 125 EPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNN 184
IG+V + + +D + S G+A+V + + +RA+++L KGK R S+ +
Sbjct: 75 SSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDP 134
Query: 185 RL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYN 236
L FI N+ + K G + + ++ +D S+ GF ++Y
Sbjct: 135 ALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NILSCKVAQDEFGNSKGYGF---VHYE 190
Query: 237 NACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQ 296
A A + K + + K + +YVKNL T ++
Sbjct: 191 TAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNEE 250
Query: 297 LKELFQRHGEVTKV-VTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVAL 354
+ELF+++GE+T ++ ++GK R FGF+++ SA A++D E GQ L V
Sbjct: 251 FRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGR 310
Query: 355 ARPQTNKRTE 364
A+ + + E
Sbjct: 311 AQKKHEREEE 320
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 94/389 (24%), Positives = 164/389 (42%), Gaps = 64/389 (16%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + V++ L + + E+ R+L E GE+ L +D ++G+S+GF
Sbjct: 220 KKDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFG 279
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIEDV 207
FV F + + A A+++L K++KG+ +L++G K E+E RK E
Sbjct: 280 FVNFVNHDSAAAAVEDLNDKEYKGQ-----------KLYVGRAQKKHEREEELRKQHEAA 328
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK 267
+ S+ +G LY N D +K+ F GN ++ A
Sbjct: 329 -----------RVEKASKYQGVN--LYVKNLTDDIDDEKLRDL-FIGFGN---ITSARVM 371
Query: 268 STPDHSAAAASQVKALYVKNLPENTTTKQLKELF-QRHGEVTKVVTPP-------GKSGK 319
A + S+ + K+ EN + KE + E T P K GK
Sbjct: 372 RDTISDAGSESEKEKEASKDNKENVKEETKKEAGGEDSAEKTDKAEKPDTKKPTDKKLGK 431
Query: 320 -RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGL 378
+ FGF+ ++ A KA+ + + ++G+ L VALA+ + ++++ S A
Sbjct: 432 SKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQA------- 484
Query: 379 PHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMH-MVPMVLPDGRIGYVL 437
+ VAA AG+ QP + P G +P G + +
Sbjct: 485 -------------RNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGFIPANAQRGGMAFA- 530
Query: 438 QQPGVQMP-LPPPRPRRVERG---PGGRG 462
QQPG+ +P +P RP + G GGRG
Sbjct: 531 QQPGMVLPGMPGGRPGQYPGGFPQQGGRG 559
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 128/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
+ D +RGF FV + + A +Q + + N L N V KS + +A
Sbjct: 130 VACDKHG---SRGFGFVHFETHEAA---QQAINTMNGMLL-NDRKVFVGHFKSRRERAAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +YVKNLP + + L++LF + G++ V SG+ R FGF+++ +
Sbjct: 183 LGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDNSGRSRCFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ E+ G++L + A+ + ++ E
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYASRAQKRVERQNE 275
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 116/276 (42%), Gaps = 32/276 (11%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + + DK S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDKHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ R +E R +++ N+P E+ + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKML 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK-STP 270
++++++D R+R F FV + + A + M ++ G S A+ +
Sbjct: 219 -SVKVMRDNSG--RSRCFGFVNFEKHEEAQKAVVHMNGK--EVSGRLLYASRAQKRVERQ 273
Query: 271 DHSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKR 320
+ Q+K LYVKNL ++ +L++ F +G +T S +
Sbjct: 274 NELKRKFEQMKQDRLSRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGSHSK 333
Query: 321 DFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
FGF+ ++ A KA+ + + + L VALA+
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 69 INTEDAVEDEDKRT-ASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPI 127
INT + + D++ + +E+ +L A + +++ LP D E+ L+DL
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQF 214
Query: 128 GEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181
G++ V +++D +SG S+ F FV F E A++A+ + K+ G+ + S ++
Sbjct: 215 GKMLSVKVMRD-NSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQ 267
>gi|385305672|gb|EIF49630.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 655
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 124/266 (46%), Gaps = 20/266 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L +E DL ++ +G+V + + +B + +S +A+V ++ +E A+ A+D
Sbjct: 60 ASLYVGDLDPSVTESDLYEIFSKVGQVSSIRVCRBAVTKKSLCYAYVNYQKREEAEHALD 119
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L D KGK R S+ + +FI N+ K G + + +
Sbjct: 120 TLAFCDIKGKQCRIMWSQRDPSMRKKGTGNVFIKNLHPDIDNKTLYDTFSTFGK-ILSCK 178
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D S +GF FV Y + A+ ++ + + N L N V A D +
Sbjct: 179 IATDEHGHS--KGFGFVHYDD---AESAKAAIENVNGMLLNNM-EVYVAPHIPRKDRESK 232
Query: 276 AASQVK---ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
+K +YVKN T QL+E+F+ +G+VT P GK R FGF+++ +
Sbjct: 233 MQEMIKNFTNVYVKNFGPEMTEDQLREMFEAYGKVTSTYLPTDNEGKARGFGFVNFEDHX 292
Query: 332 SALKAIKDTEKYEID-GQVLEVALAR 356
A KA+ + E++ G++L V A+
Sbjct: 293 EAAKAVDALNEKELEGGRILYVGRAQ 318
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 94/394 (23%), Positives = 151/394 (38%), Gaps = 67/394 (17%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L D + L D G++ + D + G SKGF FV + E AK AI+ +
Sbjct: 150 VFIKNLHPDIDNKTLYDTFSTFGKILSCKIATD-EHGHSKGFGFVHYDDAESAKAAIENV 208
Query: 166 CSKDFKGKTIRCS--------------MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
+ + M + +++ N TE + R++ E G V
Sbjct: 209 NGMLLNNMEVYVAPHIPRKDRESKMQEMIKNFTNVYVKNFGPEMTEDQLREMFEAYGK-V 267
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ L D + + RGF FV + ++ A + + + G V A+ K +
Sbjct: 268 TSTYLPTDNEG--KARGFGFVNFEDHXEAAKAVDALNEKELE-GGRILYVGRAQKKRERE 324
Query: 272 HSA-----------AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK- 319
S + Q L+VKNL + +LKE F +G++T +GK
Sbjct: 325 ESLRKQWQQARQERISKYQGVNLFVKNLDDTIDDTKLKEEFAPYGKITSAKVMTNDAGKS 384
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQT---NKRTEGVYSCAAGVHPS 376
R FGF+ Y + A +AI + + + G+ L VALA+ + N+ ++
Sbjct: 385 RGFGFVCYTKPEEATRAINEMHQRMVMGKPLYVALAQRKEVRHNQLSQQFQQRNQMRLQQ 444
Query: 377 GLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQ-----MPAGMHMVPMVLPDG 431
G G F PM YG+ MPAG+ P +G
Sbjct: 445 AAVQGGMGQFVA--------------------PMFYGQNAGFIPPMPAGVRGAPFA-GNG 483
Query: 432 RIGYVLQQ----PGVQMPLPPPRPRRVERGPGGR 461
++QQ PG +P+ P + R GP G+
Sbjct: 484 APQMMMQQGASRPGQGVPVSPGQFR---VGPNGQ 514
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +F+ L + L++ P G++ ++ + D+G+S+GF FV + E A RA
Sbjct: 343 QGVNLFVKNLDDTIDDTKLKEEFAPYGKITSAKVMTN-DAGKSRGFGFVCYTKPEEATRA 401
Query: 162 IDELCSKDFKGKTIRCSMSE 181
I+E+ + GK + ++++
Sbjct: 402 INEMHQRMVMGKPLYVALAQ 421
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 124/274 (45%), Gaps = 14/274 (5%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KGK R S+ + L FI N+ + K G +
Sbjct: 112 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 170
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + + K
Sbjct: 171 SCKVAQDEFGNSKGYGF---VHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSK 227
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGK-RDFGFIHYAER 330
+ +YVKNL + ++ +ELF+++GE+T ++ G++GK R FGF+++ +
Sbjct: 228 FEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFVNFVKH 287
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA A+++ E GQ L V A+ + + E
Sbjct: 288 ESAAAAVEELNDKEYKGQKLYVGRAQKKHEREEE 321
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 97/395 (24%), Positives = 164/395 (41%), Gaps = 76/395 (19%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + V++ L + S E+ R+L E GE+ + +D ++G+S+GF
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFG 280
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIEDV 207
FV F E A A++EL K++KG+ +L++G K E+E RK E
Sbjct: 281 FVNFVKHESAAAAVEELNDKEYKGQ-----------KLYVGRAQKKHEREEELRKQHEAA 329
Query: 208 G-------PGVDT-IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKM-----TSANFKL 254
GV+ ++ + D + R F+ + N A R S K
Sbjct: 330 RVEKASKYQGVNLYVKNLTDDIDDEKLRDL-FISFGNITSARVMRDTAGDPGSESEKEKE 388
Query: 255 DGNTPTVS-WAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTP 313
N V A+ +S + SA + +V+ K+ +N T K+L
Sbjct: 389 SANKENVKDEAKKESGEEDSADKSDKVE----KSDSKNATEKKL---------------- 428
Query: 314 PGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGV 373
GKS + FGF+ ++ A KA+ + + ++G+ L VALA+ + ++++ S A
Sbjct: 429 -GKS--KGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQA-- 483
Query: 374 HPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRI 433
+ VAA AG+ QP + P G R
Sbjct: 484 ------------------RNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGFIPANAAQRG 525
Query: 434 GYVL-QQPGVQMP-LPPPRPRRVERG----PGGRG 462
G QQPG+ +P +P RP + G GGRG
Sbjct: 526 GMAFGQQPGMVIPGMPGGRPGQFAAGFPGQQGGRG 560
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 119/270 (44%), Gaps = 14/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P+G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEMIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEASIDNKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D +RGF FV + + A ++ M D + + A
Sbjct: 130 VACDEHG---SRGFGFVHFETHEAAQHAINTMNGMLLN-DHKVFVGHFKSRREREVELGA 185
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERSSAL 334
A + +YVKNL + + L+ELF + G++ V SG R FGF+++ A
Sbjct: 186 RAMEFTNIYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDSSGHSRGFGFVNFETHEEAQ 245
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ E+ G++L V A+ + ++ E
Sbjct: 246 KAVVHMNGKEVSGRLLYVGRAQKRVERQNE 275
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 122/281 (43%), Gaps = 42/281 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + + D+ S+GF FV F + E A+ AI+ +
Sbjct: 101 IFIKNLEASIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQHAINTM 158
Query: 166 CSK----------DFKGKTIR------CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
FK + R +M TN +++ N+ E+ +++ G
Sbjct: 159 NGMLLNDHKVFVGHFKSRREREVELGARAMEFTN--IYVKNLQADVDEQGLQELFSQFGK 216
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPK- 267
+ ++++++D SR GF FV N + +++ + N K + G V A+ +
Sbjct: 217 ML-SVKVMRDSSGHSR--GFGFV---NFETHEEAQKAVVHMNGKEVSGRLLYVGRAQKRV 270
Query: 268 STPDHSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPG 315
+ Q+K LYVKNL ++ ++L++ F +G +T KV+T G
Sbjct: 271 ERQNELKRRFEQMKQDRMNRYQGVNLYVKNLDDSIDDEKLRKEFSPYGMITSAKVMTEGG 330
Query: 316 KSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 331 HS--KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 122/268 (45%), Gaps = 15/268 (5%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+++G L D ++ L DL + +V V + +D + +S G+ +V F + A +AID L
Sbjct: 26 LYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNARDAAKAIDVL 85
Query: 166 CSKDFKGKTIRC--SMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
GKTIR S+ + + R +FI N+ K+ K G + + ++
Sbjct: 86 NFTPLNGKTIRIMYSIRDPSARKSGAANVFIKNLDKAIDHKALFDTFSAFG-NILSCKIA 144
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
D A +++G FV + + A + K+ N L + + SA +
Sbjct: 145 TD--ASGQSKGHGFVQFESEESAQNAIDKL---NGMLINDKQVYVGPFQRKQDRESALSG 199
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKA 336
++ +YVKNL E TT LK +F +G +T V GK + FGF+++A A KA
Sbjct: 200 TKFNNVYVKNLFEATTEADLKSIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVEDAAKA 259
Query: 337 IKDTEKYEIDGQVLEVALARPQTNKRTE 364
++ DG+ V A+ ++ + E
Sbjct: 260 VEALNGKNFDGKEWYVGKAQKKSERELE 287
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 90/363 (24%), Positives = 152/363 (41%), Gaps = 48/363 (13%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
+ VFI L K + L D G + + D SG+SKG FV F S+E A+ AI
Sbjct: 111 AANVFIKNLDKAIDHKALFDTFSAFGNILSCKIATDA-SGQSKGHGFVQFESEESAQNAI 169
Query: 163 DELCSKDFKGKTIRC-----------SMSETN-NRLFIGNVPKSWTEKEFRKVIEDVGPG 210
D+L K + ++S T N +++ N+ ++ TE + + + + G
Sbjct: 170 DKLNGMLINDKQVYVGPFQRKQDRESALSGTKFNNVYVKNLFEATTEADLKSIFGEYG-A 228
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTP 270
+ + +++D +++GF FV + N A + + + NF DG V A+ KS
Sbjct: 229 ITSAVVMRD--VDGKSKGFGFVNFANVEDAAKAVEALNGKNF--DGKEWYVGKAQKKSER 284
Query: 271 DHSAAAASQVKA-----------LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG- 318
+ ++ LY+KNL ++ ++L+ELF G +T SG
Sbjct: 285 ELELKERNEQSTKETVDKYHGTNLYIKNLDDSVGDEELRELFSEFGTITSCKVMRDPSGI 344
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRT--EGVYSCAAGV--- 373
R GF+ ++ A A+ + + G+ L VALA+ + ++R + +S A V
Sbjct: 345 SRGSGFVAFSIAEGASWALGEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQARPVAIT 404
Query: 374 ---------HPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMV 424
+P G P G YG + + A G QQ + G A V
Sbjct: 405 PNVSPRMPLYPLGAPGIGQQLL----YGQAAPSMIPQAAFGYQQHFVPGMRPGGAPNFYV 460
Query: 425 PMV 427
P+V
Sbjct: 461 PLV 463
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
HG+ ++I L +E+LR+L G + +++D SG S+G FVAF E A A
Sbjct: 304 HGTNLYIKNLDDSVGDEELRELFSEFGTITSCKVMRDP-SGISRGSGFVAFSIAEGASWA 362
Query: 162 IDELCSKDFKGKTIRCSMSE 181
+ E+ K GK + ++++
Sbjct: 363 LGEMNGKMVAGKPLYVALAQ 382
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 118/259 (45%), Gaps = 15/259 (5%)
Query: 97 LALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
+A P + +++G L ++ L +L G+V V + +D +S S G+A+V F +
Sbjct: 30 VAQPLPTTSLYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPM 89
Query: 157 VAKRAIDELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVG 208
A RA++ L K IR S + +FI N+ K+ K G
Sbjct: 90 DAARALEMLNFVPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFG 149
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
+ + ++ D S +GF FV Y ++++ M S N L + P +
Sbjct: 150 -AILSCKVATDDMGQS--KGFGFVQYEKE---EFAQSAMKSLNGMLINDKPVYVGPFLRK 203
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHY 327
++ ++ ++VKNL E+TT + L ++F +G +T V G GK R FGFI++
Sbjct: 204 QERDNSFDKARFNNVFVKNLSESTTKEDLVKIFSEYGNITSAVVMVGTDGKSRCFGFINF 263
Query: 328 AERSSALKAIKDTEKYEID 346
A++A+++ +I+
Sbjct: 264 ESPDDAVRAVEELNGKKIN 282
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 89/381 (23%), Positives = 156/381 (40%), Gaps = 55/381 (14%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +FI L K + L D G + + D D G+SKGF FV + +E A+ A+
Sbjct: 125 ANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVATD-DMGQSKGFGFVQYEKEEFAQSAMK 183
Query: 164 ELCSKDFKGKTIRC-----------SMSETN-NRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
L K + S + N +F+ N+ +S T+++ K+ + G
Sbjct: 184 SLNGMLINDKPVYVGPFLRKQERDNSFDKARFNNVFVKNLSESTTKEDLVKIFSEYGNIT 243
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ ++ ++R F F+ + + A + +++ K++ A+ KS +
Sbjct: 244 SAVVMVG---TDGKSRCFGFINFESPDDAVRAVEELNGK--KINDKEWYCGRAQKKSERE 298
Query: 272 -----------HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-K 319
AA Q + LY+KNL + + QL+ELF G++T ++G
Sbjct: 299 MDLKRRFEQSMKDAADKYQGQNLYLKNLDDGISDDQLRELFSTFGKITSCKVMRDQNGVS 358
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRT--EGVYSCA--AGVHP 375
+ GF+ ++ R A +AI + + G+ L VA A+ + ++ + +S + P
Sbjct: 359 KGSGFVAFSTREEASQAITEMNGKMLSGKPLYVAFAQRKEERKAMLQAQFSQMRPVPITP 418
Query: 376 SGLPH---------AGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPM 426
S P G F G A + G G QQ ++ G P+G HM
Sbjct: 419 SMTPRLPMYPPMAPLGQQLFYGQAPPPMMP---PQPGFGFQQQLV--PGMRPSGAHMPNY 473
Query: 427 VLPDGRIGYVLQQPGVQMPLP 447
+P V+QQ G Q P P
Sbjct: 474 FVP------VVQQ-GQQGPRP 487
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 65 NGSHINTEDAVEDEDKRTASISEDEKEKHDQLL---ALPPHGSEVFIGGLPKDASEEDLR 121
NG IN ++ ++ + D K + +Q + A G +++ L S++ LR
Sbjct: 277 NGKKINDKEWYCGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGISDDQLR 336
Query: 122 DLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181
+L G++ +++D++ G SKG FVAF ++E A +AI E+ K GK + + ++
Sbjct: 337 ELFSTFGKITSCKVMRDQN-GVSKGSGFVAFSTREEASQAITEMNGKMLSGKPLYVAFAQ 395
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 124/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D +RGF FV + + A + + M N V KS + A
Sbjct: 130 VVCDDHG---SRGFGFVHFETHEAAQNAIRTMNGMLL----NDRKVFVGHFKSRREREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERS 331
A A + +YVKNL + + L++LF + G++ V SG R FGF+++ +
Sbjct: 183 LGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ D E+ G++L V A+ + ++ E
Sbjct: 243 DAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNE 275
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 125/279 (44%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + L D G + +V D D G S+GF FV F + E A+ AI +
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-DHG-SRGFGFVHFETHEAAQNAIRTM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ R +E R +++ N+ E+ + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFG-KI 217
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPK-ST 269
++++++D SR GF FV + + + +++ +T N K + G V A+ +
Sbjct: 218 LSVKVMRDDSGHSR--GFGFVNFEKH---EDAQKAVTDMNGKEVSGRLLYVGRAQKRVER 272
Query: 270 PDHSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q+K LYVKNL ++ ++L++ F +G +T KV+T G S
Sbjct: 273 QNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEGGHS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 124/287 (43%), Gaps = 36/287 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L KD + + D G + + D ++G SKG+AFV F ++E A RAI+++
Sbjct: 109 IFIKNLEKDIDNKAIYDTFSAFGNILSCKIALD-ENGNSKGYAFVHFETQEAANRAIEKV 167
Query: 166 CSKDFKGKTIRCS--MSETNNRLFIGNVPKSWT------------EKEFRKVIEDVGPGV 211
GK + MS IGN+ +T + EFR + E G V
Sbjct: 168 NGMLLSGKKVFVGHFMSRKERMEKIGNLAAKYTNLYVKNFRDDISDDEFRDLFEQCGKIV 227
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ + D ++RGF FV Y + A + + + F L V+ A+ KS +
Sbjct: 228 SCVVMRDDS---GKSRGFGFVSYETHEAAQKAVETLNEKEFDL--RRMYVARAQKKS--E 280
Query: 272 HSAAAASQVKA-------------LYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKS 317
SA Q + LYVKNL + +L++ F G +T V K
Sbjct: 281 RSALLRRQYEQKKQEMMKRFQGVNLYVKNLDDVIDDAKLRQEFANFGTITSAKVMSDEKG 340
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
R FGF+ ++ A KA+ + I + L VALA+ + +++ +
Sbjct: 341 ISRGFGFVCFSSPEEATKAVTEMNGRIIISKPLYVALAQRKEDRKAQ 387
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 121/263 (46%), Gaps = 9/263 (3%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+++G L D +E L + G + + + +D + S G+A+V F+ A+RA+D L
Sbjct: 21 LYVGDLAPDVNEAQLYEKFNSTGPISSIRVCRDAITRRSLGYAYVNFQQPNDAERALDTL 80
Query: 166 CSKDFKGKTIRCSMSETN---NRLFIGNVPKSWTEKEF-RKVIEDVGPGVDTIELIKDPQ 221
GK R S+ + R +GN+ EK+ K I D I K
Sbjct: 81 NFDPVNGKPCRIMWSQRDPSLRRSGVGNIFIKNLEKDIDNKAIYDTFSAFGNILSCKIAL 140
Query: 222 APSRN-RGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTV-SWAEPKSTPDHSAAAASQ 279
+ N +G+AFV + A+ + +K+ L G V + K + A++
Sbjct: 141 DENGNSKGYAFVHFETQEAANRAIEKVNG--MLLSGKKVFVGHFMSRKERMEKIGNLAAK 198
Query: 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIK 338
LYVKN ++ + + ++LF++ G++ V SGK R FGF+ Y +A KA++
Sbjct: 199 YTNLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRDDSGKSRGFGFVSYETHEAAQKAVE 258
Query: 339 DTEKYEIDGQVLEVALARPQTNK 361
+ E D + + VA A+ ++ +
Sbjct: 259 TLNEKEFDLRRMYVARAQKKSER 281
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 82/169 (48%), Gaps = 28/169 (16%)
Query: 90 KEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAF 149
KE+ +++ L + +++ D S+++ RDL E G++ +++D DSG+S+GF F
Sbjct: 186 KERMEKIGNLAAKYTNLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRD-DSGKSRGFGF 244
Query: 150 VAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNN------------------------R 185
V++ + E A++A++ L K+F + + + ++ +
Sbjct: 245 VSYETHEAAQKAVETLNEKEFDLRRMYVARAQKKSERSALLRRQYEQKKQEMMKRFQGVN 304
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLY 234
L++ N+ + + R+ + G + + +++ D + S RGF FV +
Sbjct: 305 LYVKNLDDVIDDAKLRQEFANFGT-ITSAKVMSDEKGIS--RGFGFVCF 350
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 128/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D+ + S G+A V F+ E A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L F+ N+ +S K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS D A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEEAERAIEKMNGMFL----NDHKVFVGRFKSRRDRQAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KNL E+ ++L++LF R G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ +++G+ + V A+ + ++TE
Sbjct: 243 DARKAVEEMNGKDLNGKQIYVGRAQKKVERQTE 275
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 140/318 (44%), Gaps = 53/318 (16%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+F+ L + + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEEAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ R +E R ++I N+ + ++ + + GP +
Sbjct: 159 NGMFLNDHKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D S+ GF FV + + A + ++M + L+G V A+ K
Sbjct: 219 -SVKVMTDESGKSK--GFGFVSFERHEDARKAVEEMNGKD--LNGKQIYVGRAQKKVERQ 273
Query: 268 STPDHSAAAASQVKA-----------------LYVKNLPENTTTKQLKELFQRHGEVT-- 308
+ H Q K LYVKNL + ++L++ F G +T
Sbjct: 274 TELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 333
Query: 309 KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ-------TNK 361
KV G+S + FGF+ ++ A KA+ + + + L VALA+ + +N+
Sbjct: 334 KVTMEGGRS--KGFGFVCFSSPEEATKAVTEMNGKIVATKPLYVALAQRKEERQAHLSNQ 391
Query: 362 RTEGVYSCAAGVHPSGLP 379
+ + S +AG +P P
Sbjct: 392 YMQRMASTSAGPNPVVSP 409
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ +++ +L A + V+I L +D +E L+DL G V ++ D +SG+SKG
Sbjct: 174 KSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTD-ESGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
F FV+F E A++A++E+ KD GK I
Sbjct: 233 FGFVSFERHEDARKAVEEMNGKDLNGKQI 261
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 121/279 (43%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKGKT---------IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K F G+ + E N ++I N + ++ + + GP
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-VYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ +++++ D S+ GF FV + + A + +M +L+G V A+ K
Sbjct: 218 L-SVKVMTDESGKSK--GFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVER 272
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 273 QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 128/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D+ + S G+A V F+ E A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L F+ N+ +S K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS D A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEEAERAIEKMNGMFL----NDHKVFVGRFKSRRDRQAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KNL E+ ++L++LF R G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ +++G+ + V A+ + ++TE
Sbjct: 243 DARKAVEEMNGKDLNGKQIYVGRAQKKVERQTE 275
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 141/318 (44%), Gaps = 53/318 (16%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+F+ L + + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEEAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ R +E R ++I N+ + ++ + + GP +
Sbjct: 159 NGMFLNDHKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + ++M + L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDARKAVEEMNGKD--LNGKQIYVGRAQKKVERQ 273
Query: 268 STPDHSAAAASQVKA-----------------LYVKNLPENTTTKQLKELFQRHGEVT-- 308
+ H Q K LYVKNL + ++L++ F G +T
Sbjct: 274 TELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 333
Query: 309 KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ-------TNK 361
KV G+S + FGF+ ++ A KA+ + + + L VALA+ + +N+
Sbjct: 334 KVTMEGGRS--KGFGFVCFSSPEEATKAVTEMNGKIVATKPLYVALAQRKEERQAHLSNQ 391
Query: 362 RTEGVYSCAAGVHPSGLP 379
+ + S +AG +P P
Sbjct: 392 YMQRMASTSAGPNPVVSP 409
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ +++ +L A + V+I L +D +E L+DL G V ++ D +SG+SKG
Sbjct: 174 KSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTD-ESGKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
F FV+F E A++A++E+ KD GK I
Sbjct: 233 FGFVSFERHEDARKAVEEMNGKDLNGKQI 261
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 116/257 (45%), Gaps = 20/257 (7%)
Query: 120 LRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179
L + P G V + + +D + S G+A+V F+ A+RA+D + KGK IR
Sbjct: 2 LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW 61
Query: 180 SETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAF 231
S+ + L FI N+ KS K G + + +++ D ++G+AF
Sbjct: 62 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENG---SKGYAF 117
Query: 232 VLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA---AAASQVKALYVKNL 288
V + AD + +KM N V KS + A A A + +Y+KN
Sbjct: 118 VHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNF 173
Query: 289 PENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDG 347
E + LKELF + G+ V SGK + FGF+ Y + A KA+++ EI G
Sbjct: 174 GEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISG 233
Query: 348 QVLEVALARPQTNKRTE 364
+++ V A+ + ++ E
Sbjct: 234 KIIFVGRAQKKVERQAE 250
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 76 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 133
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 134 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 181
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 182 LKELFSQFGKTLSVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKIIF 237
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 238 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 297
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 298 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 344
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D SG+SKG
Sbjct: 149 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 207
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 208 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 267
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 268 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 319
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 320 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 377
>gi|242077146|ref|XP_002448509.1| hypothetical protein SORBIDRAFT_06g028190 [Sorghum bicolor]
gi|241939692|gb|EES12837.1| hypothetical protein SORBIDRAFT_06g028190 [Sorghum bicolor]
Length = 620
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 89/337 (26%), Positives = 143/337 (42%), Gaps = 53/337 (15%)
Query: 30 LDDDGEVGRDGNVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDE 89
LD V D V+ D E D + + + G ED E ED+ A I++++
Sbjct: 19 LDKKNTVDNDTIVENTDLQEMEDLDNKESEDLDGRRRETEIREDQ-EKEDENGAPITDEK 77
Query: 90 KEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAF 149
K LAL ++I LP SE+DL +LC G+V + +V DK + S G +
Sbjct: 78 K------LALET--GRLYICNLPYATSEDDLVELCRQYGDVEQAHIVVDKTTKLSTGRGY 129
Query: 150 VAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE--TNNRLFIGNVPKSWTEKEFRKVIEDV 207
V F + A RA+DEL + F+G+ +R ++ NN+L E V+E +
Sbjct: 130 VLFCLPDSAVRALDELDNSSFQGRVLRVKAAKPLNNNKL----------ESNHETVVEKM 179
Query: 208 GPGVDTIELIKDPQAPSRNRGF-AFVLYYNNACADYSRQKMTSANFKLD----------- 255
+E K + R + +F + + + +R+ S + LD
Sbjct: 180 NLKQKRLEQKKASEISGDTRAWNSFYMRQDTVVENIARKNGISKSELLDREADDLAVRIA 239
Query: 256 -GNTPTVSWAEPKSTPDHSAAAASQVKAL-------------YVKNLPENTTTKQLKELF 301
G T + AE K S + ++ L VKNLP N+T ++L +F
Sbjct: 240 LGETHVI--AETKKFLSRSGVNVAALEELASKRNEKRSNHVILVKNLPFNSTEEELAAMF 297
Query: 302 QRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
Q+HG + K++ PP R F + + E + A A K
Sbjct: 298 QKHGSLDKIILPPT----RVFALVVFVEATEARHAFK 330
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFG--FIHYAERSSALKAIKDT 340
LY+ NLP T+ L EL +++G+V + K+ K G ++ + SA++A+ +
Sbjct: 86 LYICNLPYATSEDDLVELCRQYGDVEQAHIVVDKTTKLSTGRGYVLFCLPDSAVRALDEL 145
Query: 341 EKYEIDGQVLEVALARPQTNKRTEG 365
+ G+VL V A+P N + E
Sbjct: 146 DNSSFQGRVLRVKAAKPLNNNKLES 170
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
+++ + + +A+E+DLR L P G++ + L G +GFAFV + +K+ A+ A+
Sbjct: 496 STKLLVRNVAFEATEKDLRQLFSPFGQIKSLRL--PMKFGSHRGFAFVEYVTKQEAQNAL 553
Query: 163 DELCSKDFKGKTI 175
L S G+ +
Sbjct: 554 QALASTHLYGRHL 566
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
S +++G L D +E L + P+G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 SSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D +RGF FV + N A +Q +++ N L N V KS + A
Sbjct: 130 VACDEHG---SRGFGFVHFETNEAA---QQAISTMNGMLL-NDRKVFVGHFKSHREREAE 182
Query: 276 AASQVKA---LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERS 331
+Q A +YVKNL + + L++LF G++ V SG R FGF+++ +
Sbjct: 183 LGAQALAFTNIYVKNLHVDMDEQGLQDLFFEFGKMLSVKVMRDNSGHSRGFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ E+ GQ L V A+ + ++ E
Sbjct: 243 EAQKAVDHMNGKEVSGQQLYVGRAQKRGERQNE 275
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 120/280 (42%), Gaps = 40/280 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + L D G + + D+ S+GF FV F + E A++AI +
Sbjct: 101 VFIKNLEDSIDSKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETNEAAQQAISTM 158
Query: 166 CSKDFKGKTIRC----------------SMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
+ + +++ TN +++ N+ E+ + + + G
Sbjct: 159 NGMLLNDRKVFVGHFKSHREREAELGAQALAFTN--IYVKNLHVDMDEQGLQDLFFEFGK 216
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST 269
+ ++++++D SR GF FV + + A + M ++ G V A+ +
Sbjct: 217 ML-SVKVMRDNSGHSR--GFGFVNFEKHEEAQKAVDHMNGK--EVSGQQLYVGRAQKRGE 271
Query: 270 PDHSAAA-ASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGK 316
+ Q+K LYVKNL ++ + ++L+ +F +G +T KV+T G
Sbjct: 272 RQNELKRRFEQMKQDRQTRYQGVNLYVKNLDDSISDEKLRTVFSPYGVITSAKVMTEGGH 331
Query: 317 SGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 332 S--KGFGFVCFSSPEEATKAVTEMNGCIVGTKPLYVALAQ 369
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +++ L S+E LR + P G + ++ + G SKGF FV F S E A +A
Sbjct: 292 QGVNLYVKNLDDSISDEKLRTVFSPYGVITSAKVM--TEGGHSKGFGFVCFSSPEEATKA 349
Query: 162 IDEL 165
+ E+
Sbjct: 350 VTEM 353
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 109/411 (26%), Positives = 173/411 (42%), Gaps = 69/411 (16%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + + D SGES+G+ FV F E A+ AID+L
Sbjct: 125 IFIKNLDKSIDNKALYDTFCAFGNILSCKIATDP-SGESRGYGFVQFEKDESAQSAIDKL 183
Query: 166 C------SKDFKGKTIR------CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
K F G +R S + + +++ N+ + T+ E +++ G + +
Sbjct: 184 NGMLINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGT-ITS 242
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT-VSWAEPKSTPD- 271
+++D + ++R F FV + N AD + Q + N K+ + V A+ KS +
Sbjct: 243 AVVMRD--SDGKSRCFGFVNFEN---ADAAAQAVQELNGKIFNDKELYVGRAQKKSEREM 297
Query: 272 ----------HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KR 320
A Q LY+KNL EN ++L+ELF +G +T +G R
Sbjct: 298 ELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRDSNGVSR 357
Query: 321 DFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRT--EGVYSCAAGV----- 373
GF+ + A +A+ + + + L VALA+ + +++ + +S V
Sbjct: 358 GSGFVAFKSAEDANRALTEMNGKMVGSKPLYVALAQRKEDRKAKLQAQFSQMRPVAMAPS 417
Query: 374 -------HPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGR---GQMPAGMHM 423
P G+P G F G + + AG QQP++ G G MP M
Sbjct: 418 VGPRMPMFPPGVPGVGQQLFYGQPPPAF---INPQAGFAFQQPLMPGMRPGGPMPN--FM 472
Query: 424 VPMV-------LPDGRIGYVLQQPGVQMPL-----PPPRPRRVERGPGGRG 462
+PMV P GR +QQP MP+ PR R R P GRG
Sbjct: 473 MPMVQQGQQPQRPAGRRAGGMQQP---MPMGGQQQVFPRGGRGYRYPTGRG 520
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 123/270 (45%), Gaps = 15/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L + + L D+ +G V V + +D +S +S G+A+V + ++ A RA++
Sbjct: 35 TSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALE 94
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L GK IR S + +FI N+ KS K G + + +
Sbjct: 95 LLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFG-NILSCK 153
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ DP S RG+ FV + + A + K+ N L + + + +
Sbjct: 154 IATDPSGES--RGYGFVQFEKDESAQSAIDKL---NGMLINDKKVFVGPFVRKQDRENVS 208
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
+ + +YVKNL + T +LKE+F ++G +T V GK R FGF+++ +A
Sbjct: 209 SNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAA 268
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A+++ + + L V A+ ++ + E
Sbjct: 269 QAVQELNGKIFNDKELYVGRAQKKSEREME 298
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 91 EKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFV 150
EK+ Q +A + +++ L ++ +E LR+L G + +++D + G S+G FV
Sbjct: 304 EKNVQEVAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRDSN-GVSRGSGFV 362
Query: 151 AFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181
AF+S E A RA+ E+ K K + ++++
Sbjct: 363 AFKSAEDANRALTEMNGKMVGSKPLYVALAQ 393
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 121/279 (43%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKGKT---------IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K F G+ + E N ++I N + ++ + + GP
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-VYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ +++++ D S+ GF FV + + A + +M +L+G V A+ K
Sbjct: 218 L-SVKVMTDESGKSK--GFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVER 272
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 273 QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
>gi|389586343|dbj|GAB69072.1| polyadenylate-binding protein, partial [Plasmodium cynomolgi strain
B]
Length = 883
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 120/256 (46%), Gaps = 19/256 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L +D +E L ++ +G V + + +D + +S G+A+V + + A+RA+D
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L + KG+ R S + +F+ N+ KS K G + + +
Sbjct: 76 TLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFG-NILSCK 134
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D S++ G FV Y + A + +K+ +L V KS A
Sbjct: 135 VATDEFGKSKSYG--FVHYEDEESAKEAIEKVNG--IQLGSKNVYVGHFIKKS---ERAT 187
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALK 335
++ LYVKN P++ T LKELF +GE+T ++ R F FI+YA+ SA
Sbjct: 188 NDTKFTNLYVKNFPDSVTETHLKELFSPYGEITSMIVKTDNKN-RKFCFINYADSESAKN 246
Query: 336 AIKDTEKYEI--DGQV 349
A+++ +I DGQ+
Sbjct: 247 AMENLNGKKITDDGQI 262
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 78/182 (42%), Gaps = 30/182 (16%)
Query: 84 SISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGE 143
+++ + K KH G ++I L ++ L++L EP G + +++D D +
Sbjct: 437 NLNMESKNKH--------QGVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRD-DKEQ 487
Query: 144 SKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRK- 202
SKGF FV F +E A +A+ E+ K GK + ++E + S ++ FR
Sbjct: 488 SKGFGFVCFALQEEANKAVTEMHLKIINGKPLYVGLAEKREQRL------SRLQQRFRMH 541
Query: 203 -VIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTV 261
+ + +++ +PQ+P L +N +Y R +T N +
Sbjct: 542 PIRHHMNNALNSPMQYPNPQSPQ--------LQFNQNTLNYGRPVLTPFN-----QNNLI 588
Query: 262 SW 263
SW
Sbjct: 589 SW 590
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGKRDFGFIHYAERSSALKAIKDTE 341
LY+KNL + + LKELF+ +G +T V K + FGF+ +A + A KA+ +
Sbjct: 451 LYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANKAVTEMH 510
Query: 342 KYEIDGQVLEVALA 355
I+G+ L V LA
Sbjct: 511 LKIINGKPLYVGLA 524
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 122/274 (44%), Gaps = 14/274 (5%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 51 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 110
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KGK R S+ + L FI N+ + K G +
Sbjct: 111 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 169
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + + K
Sbjct: 170 SCKVAQDEFGNSKGYGF---VHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSK 226
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGK-RDFGFIHYAER 330
+ +YVKNL T ++ +ELF+++GE+T ++ ++GK R FGF+++
Sbjct: 227 FEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNH 286
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA A++D E GQ L V A+ + + E
Sbjct: 287 DSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEE 320
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 94/389 (24%), Positives = 164/389 (42%), Gaps = 64/389 (16%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + V++ L + + E+ R+L E GE+ L +D ++G+S+GF
Sbjct: 220 KKDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFG 279
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIEDV 207
FV F + + A A+++L K++KG+ +L++G K E+E RK E
Sbjct: 280 FVNFVNHDSAAAAVEDLNDKEYKGQ-----------KLYVGRAQKKHEREEELRKQHEAA 328
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK 267
+ S+ +G LY N D +K+ F GN ++ A
Sbjct: 329 -----------RVEKASKYQGVN--LYVKNLTDDIDDEKLRDL-FIGFGN---ITSARVM 371
Query: 268 STPDHSAAAASQVKALYVKNLPENTTTKQLKEL-FQRHGEVTKVVTPP-------GKSGK 319
A + S+ + K+ EN + KE + E T P K GK
Sbjct: 372 RDTIGDAGSESEKEKEASKDNKENVKEETKKEAGGEDSAEKTDKAEKPDTKKPTDKKLGK 431
Query: 320 -RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGL 378
+ FGF+ ++ A KA+ + + ++G+ L VALA+ + ++++ S A
Sbjct: 432 SKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQA------- 484
Query: 379 PHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMH-MVPMVLPDGRIGYVL 437
+ VAA AG+ QP + P G +P G + +
Sbjct: 485 -------------RNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGFIPANAQRGGMAFA- 530
Query: 438 QQPGVQMP-LPPPRPRRVERG---PGGRG 462
QQPG+ +P +P RP + G GGRG
Sbjct: 531 QQPGMVLPGMPGGRPGQYPGGFPQQGGRG 559
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 126/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +DK + S G+A+V ++ ++RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPRDSERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ + + GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 137/324 (42%), Gaps = 26/324 (8%)
Query: 53 AETSKEDQSPGA---NGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIG 109
A T D + GA NG+ +NT + V D A+ + + + PH + +++G
Sbjct: 6 ATTPAVDNANGAADSNGTTVNT-NVVPDTAASDAATTPNPNQ---------PHSASLYVG 55
Query: 110 GLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKD 169
L +E L +L IG+V + + +D + S G+A+V + + +RA+++L
Sbjct: 56 ELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTL 115
Query: 170 FKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
KG+ R S+ + L FI N+ + K G + + ++ +D
Sbjct: 116 IKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NILSCKVAQDEF 174
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
S+ GF ++Y A A + K + D K +
Sbjct: 175 GNSKGYGF---VHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFT 231
Query: 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDT 340
+YVKN+ T ++ +ELF + G++T SGK R FGF++Y + +A A+ D
Sbjct: 232 NVYVKNIDPEVTDEEFRELFGKFGDITSATISRDDSGKSRGFGFVNYVDHENAQTAVDDL 291
Query: 341 EKYEIDGQVLEVALARPQTNKRTE 364
+ GQ L V A+ + + E
Sbjct: 292 NDKDFHGQKLYVGRAQKKHEREEE 315
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 129/331 (38%), Gaps = 78/331 (23%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + L D G + + +D + G SKG+ FV + + E A AI +
Sbjct: 140 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 198
Query: 166 C------SKDFKGKTI----RCS----MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G I R S M +++ N+ T++EFR++ G +
Sbjct: 199 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYVKNIDPEVTDEEFRELFGKFG-DI 257
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ + +D SR GF FV Y ++ A + + +F G V A+ K +
Sbjct: 258 TSATISRDDSGKSR--GFGFVNYVDHENAQTAVDDLNDKDFH--GQKLYVGRAQKKHERE 313
Query: 272 HSA-----------AAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVV------- 311
A+ Q LYVKNL ++ ++L+ELF G +T KV+
Sbjct: 314 EELRRQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSAFGTITSAKVMRDTVGAG 373
Query: 312 --------------------------------TPPGKSGK------RDFGFIHYAERSSA 333
T KS K + FGF+ ++ A
Sbjct: 374 SDSEKEETKESSEEVEEPKEEETNAKTEDEDKTDAKKSDKKVFGKSKGFGFVCFSSPDEA 433
Query: 334 LKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + + ++G+ L VALA+ + ++++
Sbjct: 434 SKAVTEMNQRMVNGKPLYVALAQRKDVRKSQ 464
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ + + GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGAALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGAALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 123/289 (42%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G +D
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGARAKEFTNVYIKNFGEDMDDER 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
+++++ D +++GF FV + + A + +M +L+G
Sbjct: 207 LKDLFGKFGAALSVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIY 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K Q LYVKNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGINDERLRKEFSPFGTITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMMEGGRS--KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + +FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 135/317 (42%), Gaps = 49/317 (15%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKGKT---------IRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K F G+ + E N ++I N + ++ + + GP
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-VYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ +++++ D S+ GF FV + + A + +M +L+G V A+ K
Sbjct: 218 L-SVKVMTDESGKSK--GFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVER 272
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 273 QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ-------TNKRTEGVYSCA 370
+ FGF+ ++ A KA+ + + + L VALA+ + TN+ + + S
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVR 390
Query: 371 AGVHPSG----LPHAGY 383
A +P+ L H Y
Sbjct: 391 AVPNPASTSFRLLHGSY 407
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 120/273 (43%), Gaps = 13/273 (4%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 108
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KGK R S+ + L FI N+ + K G +
Sbjct: 109 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NIL 167
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + D K
Sbjct: 168 SCKVAQDEFGNSKGYGF---VHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 224
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
+ +Y+KN+ + T ++ +++F++ GE+T + GK R FGF++++
Sbjct: 225 FEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHD 284
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA A+ + EI GQ L V A+ + + E
Sbjct: 285 SAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEE 317
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 131/330 (39%), Gaps = 77/330 (23%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + L D G + + +D + G SKG+ FV + + E A AI +
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 166 C------SKDFKGKTI----RCS----MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G I R S M ++I N+ + T++EFRK+ E G +
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGE-I 259
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ L +D + ++RGF FV + + A + +M K G V A+ K +
Sbjct: 260 TSATLSRDQEG--KSRGFGFVNFSTHDSAQAAVDEMNDKEIK--GQKLYVGRAQKKHERE 315
Query: 272 HSA-----------AAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
A+ Q LYVKNL ++ ++L+ELF G +T KV+ +G
Sbjct: 316 EELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTAG 375
Query: 319 K--------------------------------------------RDFGFIHYAERSSAL 334
+ + FGF+ ++ A
Sbjct: 376 ETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKKTEKKILGKSKGFGFVCFSSPDEAS 435
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + + ++G+ L VALA+ + +R++
Sbjct: 436 KAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 465
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ + + GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 133/310 (42%), Gaps = 20/310 (6%)
Query: 65 NGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLC 124
NG+ INT A E + +E PH + +++G L +E L +L
Sbjct: 21 NGTTINTNVATE------GAADGNETPNSAAPTNAQPHSASLYVGELDPSVTEAMLFELF 74
Query: 125 EPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNN 184
IG+V + + +D + S G+A+V + + +RA+++L KGK R S+ +
Sbjct: 75 SSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDP 134
Query: 185 RL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYN 236
L FI N+ + K G + + ++ +D S+ GF ++Y
Sbjct: 135 ALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NILSCKVAQDEFGNSKGYGF---VHYE 190
Query: 237 NACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQ 296
A A + K + + K + +YVKNL T ++
Sbjct: 191 TAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNEE 250
Query: 297 LKELFQRHGEVTKV-VTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVAL 354
+ELF+++GE+T ++ ++GK R FGF+++ SA A++D E GQ L V
Sbjct: 251 FRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGR 310
Query: 355 ARPQTNKRTE 364
A+ + + E
Sbjct: 311 AQKKHEREEE 320
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 94/389 (24%), Positives = 164/389 (42%), Gaps = 64/389 (16%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + V++ L + + E+ R+L E GE+ L +D ++G+S+GF
Sbjct: 220 KKDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFG 279
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIEDV 207
FV F + + A A+++L K++KG+ +L++G K E+E RK E
Sbjct: 280 FVNFVNHDSAAAAVEDLNDKEYKGQ-----------KLYVGRAQKKHEREEELRKQHEAA 328
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK 267
+ S+ +G LY N D +K+ F GN ++ A
Sbjct: 329 -----------RVEKASKYQGVN--LYVKNLTDDIDDEKLRDL-FIGFGN---ITSARVM 371
Query: 268 STPDHSAAAASQVKALYVKNLPENTTTKQLKEL-FQRHGEVTKVVTPP-------GKSGK 319
A + S+ + K+ EN + KE + E T P K GK
Sbjct: 372 RDTIGDAGSESEKEKEASKDNKENVREETKKEAGGEDSAEKTDKAEKPDTKKPTDKKLGK 431
Query: 320 -RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGL 378
+ FGF+ ++ A KA+ + + ++G+ L VALA+ + ++++ S A
Sbjct: 432 SKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQA------- 484
Query: 379 PHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMH-MVPMVLPDGRIGYVL 437
+ VAA AG+ QP + P G +P G + +
Sbjct: 485 -------------RNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGFIPANAQRGGMAFA- 530
Query: 438 QQPGVQMP-LPPPRPRRVERG---PGGRG 462
QQPG+ +P +P RP + G GGRG
Sbjct: 531 QQPGMVLPGMPGGRPGQYPGGFPQQGGRG 559
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 120/273 (43%), Gaps = 13/273 (4%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 108
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KGK R S+ + L FI N+ + K G +
Sbjct: 109 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NIL 167
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + D K
Sbjct: 168 SCKVAQDEFGNSKGYGF---VHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 224
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
+ +Y+KN+ + T ++ +++F++ GE+T + GK R FGF++++
Sbjct: 225 FEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHD 284
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA A+ + EI GQ L V A+ + + E
Sbjct: 285 SAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEE 317
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 131/332 (39%), Gaps = 79/332 (23%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + L D G + + +D + G SKG+ FV + + E A AI +
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 166 C------SKDFKGKTI----RCS----MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G I R S M ++I N+ + T++EFRK+ E G +
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGE-I 259
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ L +D + ++RGF FV + + A + +M K G V A+ K +
Sbjct: 260 TSATLSRDQEG--KSRGFGFVNFSTHDSAQAAVDEMNDKEIK--GQKLYVGRAQKKHERE 315
Query: 272 HSA-----------AAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
A+ Q LYVKNL ++ ++L+ELF G +T KV+ +G
Sbjct: 316 EELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTTG 375
Query: 319 K----------------------------------------------RDFGFIHYAERSS 332
+ + FGF+ ++
Sbjct: 376 ETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEPKKTEKKILGKSKGFGFVCFSSPDE 435
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + + ++G+ L VALA+ + +R++
Sbjct: 436 ASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 467
>gi|328871935|gb|EGG20305.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 567
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 97/391 (24%), Positives = 162/391 (41%), Gaps = 51/391 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI--- 162
+FI L K + L D G + +V D ++ SKGF FV + S++ A +AI
Sbjct: 98 IFIKNLDKSVDHKALFDTFSAFGNILSCKVVTD-ETNVSKGFGFVHYESQDSADKAIMKV 156
Query: 163 -------DELCSKDFKGKTIRCSMSETN-NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTI 214
++ FK R E +++ N+ + E+E R ++ G + +
Sbjct: 157 NGMIINDQKVFVGPFKSSKERGQTQELKYTNVYVKNLSEDVNEEELRDLLVPYG-KITNL 215
Query: 215 ELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKL-DGNTPTVSWAEPK----ST 269
++ D ++ S+ GFA N D ++ + + N KL G V A+ K +
Sbjct: 216 TIMSDEKSKSKGFGFA-----NFETPDEAKNCVEAENGKLFHGKVIYVGRAQKKMEREAE 270
Query: 270 PDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKRDFGFIHY 327
H Q LY+KN+ ++ + +L+ F +G +T KV+ + + FGF+ Y
Sbjct: 271 LKHKFETKYQGVNLYIKNIDDSIDSDKLRSTFAAYGTITSAKVMRDDKSTSSKGFGFVCY 330
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFA 387
A KA+ + + + L VA A+ + +R A + F
Sbjct: 331 TTPDEASKAVAEMHGRMVGNKPLYVAFAQRKEIRRQHL--------------EAQHNKFK 376
Query: 388 GTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQP-GVQMPL 446
G V + + AG PM Y +G MP + P ++P R G+ P G P+
Sbjct: 377 GNRIQPVPS---MYAGG----PMFYNQG-MPV---VYPQMMPRPRPGWNQPVPQGQGYPM 425
Query: 447 PPPRPRRVERGPGGRGASSGGSDGSSGRRYR 477
P P R +RGPGG G G+ +R R
Sbjct: 426 QPNYPIRNQRGPGGAPNHPRGPGGAPNQRPR 456
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 121/270 (44%), Gaps = 16/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
S +++G L +D ++ L ++ +G V + + +D + S +A+V + + A+RA+D
Sbjct: 8 SSLYVGDLHQDVTDSQLFEIFNQVGPVANLRICRDTTTRRSLNYAYVNYHNPADAERALD 67
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L + KGK R S+ + L FI N+ KS K G + + +
Sbjct: 68 TLNNTLVKGKACRIMWSQRDPSLRKSGVGNIFIKNLDKSVDHKALFDTFSAFG-NILSCK 126
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D S +GF FV Y + AD + K+ + N V KS+ +
Sbjct: 127 VVTDETNVS--KGFGFVHYESQDSADKAIMKVNG----MIINDQKVFVGPFKSSKERGQT 180
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGKRDFGFIHYAERSSAL 334
+ +YVKNL E+ ++L++L +G++T + + KS + FGF ++ A
Sbjct: 181 QELKYTNVYVKNLSEDVNEEELRDLLVPYGKITNLTIMSDEKSKSKGFGFANFETPDEAK 240
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
++ G+V+ V A+ + + E
Sbjct: 241 NCVEAENGKLFHGKVIYVGRAQKKMEREAE 270
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 12/175 (6%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S +++ L++G++ + T+ + ++ VGP V + + +D R+ +A+V Y+N
Sbjct: 4 SFSSSSLYVGDLHQDVTDSQLFEIFNQVGP-VANLRICRD-TTTRRSLNYAYVNYHN--P 59
Query: 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKE 299
AD R T N + G + W++ + S V +++KNL ++ K L +
Sbjct: 60 ADAERALDTLNNTLVKGKACRIMWSQ-----RDPSLRKSGVGNIFIKNLDKSVDHKALFD 114
Query: 300 LFQRHGEV--TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEV 352
F G + KVVT K FGF+HY + SA KAI I+ Q + V
Sbjct: 115 TFSAFGNILSCKVVTDETNVSK-GFGFVHYESQDSADKAIMKVNGMIINDQKVFV 168
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ + + GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 126/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D +RGF FV + + A +Q + + N L N V KS + A
Sbjct: 130 VVCDEHG---SRGFGFVHFETHEAA---QQAINTMNGMLL-NDRKVFVGHFKSRREREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERS 331
A A + +YVKNLP + + L++LF + G++ V SG R FGF+++ +
Sbjct: 183 LGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ E+ G++L A+ + ++ E
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 69 INTEDAVEDEDKRT-ASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPI 127
INT + + D++ + +E+ +L A + +++ LP D E+ L+DL
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQF 214
Query: 128 GEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
G++ V +++D +SG S+ F FV F E A++A+ + K+ G+ +
Sbjct: 215 GKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 121/279 (43%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + +V D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ R +E R +++ N+P E+ + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPK-ST 269
++++++D SR GF N + +++ + N K + G A+ +
Sbjct: 219 -SVKVMRDNSGHSRCFGFV-----NFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVER 272
Query: 270 PDHSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q+K LYVKNL ++ +L++ F +G +T KV+T G S
Sbjct: 273 QNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 127/274 (46%), Gaps = 14/274 (5%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 55 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 114
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KG+ R S+ + L FI N+ + K G +
Sbjct: 115 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 173
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + + K
Sbjct: 174 SCKVAQDEYGNSKGYGF---VHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSK 230
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGK-RDFGFIHYAER 330
+ +YVKN+ ++ T ++ + LF+++GE+T ++ ++GK R FGF+++++
Sbjct: 231 FEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDH 290
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A A++ +YE+ GQ L V A+ + + E
Sbjct: 291 EAASAAVEALNEYELKGQKLYVGRAQKKHEREEE 324
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 97/399 (24%), Positives = 156/399 (39%), Gaps = 66/399 (16%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + +++ + +D ++E+ R L E GE+ L +D ++G+S+GF
Sbjct: 224 KKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFG 283
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIEDV 207
FV F E A A++ L + KG+ +L++G K E+E RK E
Sbjct: 284 FVNFSDHEAASAAVEALNEYELKGQ-----------KLYVGRAQKKHEREEELRKQYE-- 330
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAE-- 265
IE Q + LY N D +K+ F GN +
Sbjct: 331 ---AARIEKASKYQGVN--------LYIKNLSDDIDDEKLREL-FSSYGNITSAKVMREA 378
Query: 266 ----PKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD 321
P T A + K E +K E + E T+ T K K+
Sbjct: 379 IVDVPAETEKDKEADKEKAKKEGGDKSEEKGESKSESEDKSKSEEKTEGKTESTKPEKKH 438
Query: 322 ------FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHP 375
FGF+ ++ A KA+ + + + G+ L VALA+ + ++++ V + +
Sbjct: 439 LGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQ-VSTKVIHLIR 497
Query: 376 SGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMI-----YG------------RGQMP 418
S + Y A + VAA AG+ QP + YG RG
Sbjct: 498 SQFTNI-YQLEASIQARNTIRQQQVAAAAGMAQPFMQPAVFYGAPGQQGFLPGAQRGMQF 556
Query: 419 AGMH-MVPMVLPDGRIGYVLQQPGVQ--------MPLPP 448
AG MV +P GR G Q PG Q PLPP
Sbjct: 557 AGQAGMVMPGMPGGRPGQFPQFPGQQGGRGMNPNQPLPP 595
>gi|215712317|dbj|BAG94444.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 436
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 80/147 (54%), Gaps = 14/147 (9%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++F+GGLP+D +E D GE+ + +++DK + + +GF F+ + + V R +D+
Sbjct: 24 KIFVGGLPRDTTEADFVKHFGQYGEIVDSVIMRDKHTSQPRGFGFITYSNPAVVDRVMDD 83
Query: 165 LCSKDFKGKTIRC----------SMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTI 214
+ +F GK + S ++F+G +P++ TE +F+ + GP VD
Sbjct: 84 I--HEFNGKQVEIKRTIPKDSVQSKDFKTKKIFVGGLPQALTEDDFKHFFQKYGPVVDH- 140
Query: 215 ELIKDPQAPSRNRGFAFVLYYNNACAD 241
++++D Q R+RGF F+++ ++ D
Sbjct: 141 QIMRDHQT-KRSRGFGFIVFSSDQVVD 166
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 11/146 (7%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSR 244
++F+G +P+ TE +F K G VD++ +++D S+ RGF F+ Y N A D
Sbjct: 24 KIFVGGLPRDTTEADFVKHFGQYGEIVDSV-IMRDKHT-SQPRGFGFITYSNPAVVD--- 78
Query: 245 QKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRH 304
++ + +G + PK D + + K ++V LP+ T K FQ++
Sbjct: 79 -RVMDDIHEFNGKQVEIKRTIPK---DSVQSKDFKTKKIFVGGLPQALTEDDFKHFFQKY 134
Query: 305 GEVT--KVVTPPGKSGKRDFGFIHYA 328
G V +++ R FGFI ++
Sbjct: 135 GPVVDHQIMRDHQTKRSRGFGFIVFS 160
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ + + GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 126/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D +RGF FV + + A +Q + + N L N V KS + A
Sbjct: 130 VVCDEHG---SRGFGFVHFETHEAA---QQAINTMNGMLL-NDRKVFVGHFKSRREREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERS 331
A A + +YVKNLP + + L++LF + G++ V SG R FGF+++ +
Sbjct: 183 LGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ E+ G++L A+ + ++ E
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 69 INTEDAVEDEDKRT-ASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPI 127
INT + + D++ + +E+ +L A + +++ LP D E+ L+DL
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQF 214
Query: 128 GEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
G++ V +++D +SG S+ F FV F E A++A+ + K+ G+ +
Sbjct: 215 GKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 121/279 (43%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + +V D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ R +E R +++ N+P E+ + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPK-ST 269
++++++D SR GF N + +++ + N K + G A+ +
Sbjct: 219 -SVKVMRDNSGHSRCFGFV-----NFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVER 272
Query: 270 PDHSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q+K LYVKNL ++ +L++ F +G +T KV+T G S
Sbjct: 273 QNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 124/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIDKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LKE+F ++G V +GK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ D +++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDDMNGKDMNGKAIYVGRAQKKVERQTE 275
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAID++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + M + ++G V A+ K
Sbjct: 219 -SVKVMTDDNG--KSKGFGFVSFERHEDAQKAVDDMNGKD--MNGKAIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVEDE-DKRTASISEDEK----------EKHDQLLALPPHGSEV 106
E+ S G H T++A E DK + D K E+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+++ G V ++ D D+G+SKGF FV+F E A++A+D++
Sbjct: 194 YIKNFGEDMDDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDDMN 252
Query: 167 SKDFKGKTI 175
KD GK I
Sbjct: 253 GKDMNGKAI 261
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ + + GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 141/314 (44%), Gaps = 30/314 (9%)
Query: 64 ANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDL 123
ANG+ INT A + T + + H+Q + + +++G L +E L +L
Sbjct: 17 ANGAQINTNVAAAQAEAPTPTSA---APAHNQ------NSASLYVGELDPSVTEAMLFEL 67
Query: 124 CEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN 183
IG+V + + +D + S G+A+V + S E ++A++EL KGK R S+ +
Sbjct: 68 FSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRD 127
Query: 184 NRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYY 235
L FI N+ + K G + + ++ +D S +G+ FV Y
Sbjct: 128 PALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG-NILSCKVAQDELGNS--KGYGFVHYE 184
Query: 236 NNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKA----LYVKNLPEN 291
A+ + + + L+ V PK + ++KA +YVKN+ +
Sbjct: 185 TAEAANNAIKHVNG--MLLNEKKVFVGHHIPKK---ERMSKFEEMKANFTNIYVKNIDLD 239
Query: 292 TTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVL 350
+ ++ +ELF++HG++T + GK R FGF++Y + +A A+ + GQ L
Sbjct: 240 VSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKL 299
Query: 351 EVALARPQTNKRTE 364
V A+ + + E
Sbjct: 300 YVGRAQKKHEREEE 313
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 94/399 (23%), Positives = 156/399 (39%), Gaps = 99/399 (24%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + L D G + + +D + G SKG+ FV + + E A AI +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 166 C------SKDFKGKTI----RCS----MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G I R S M +++ N+ +++EFR++ E G +
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHG-DI 255
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ + +D Q ++RGF FV Y + A + + +F+ G V A+ K +
Sbjct: 256 TSASIARDEQG--KSRGFGFVNYIKHEAASAAVDALNDTDFR--GQKLYVGRAQKKHERE 311
Query: 272 H-------SAAAASQVK----ALYVKNLPENTTTKQLKELFQRHGEVT--KVV------- 311
+A Q K LY+KNL ++ ++L+++F G +T KV+
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAE 371
Query: 312 ---TP-------------------PGKSGKRD----------------------FGFIHY 327
TP G K+D FGF+ +
Sbjct: 372 RSETPGDEKKEESKEEAEKTEESKEGADDKKDENKPGEKVTIKGEKKILGKSKGFGFVCF 431
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFA 387
+ A KA+ + + I+G+ L VALA+ + + R + + + + F
Sbjct: 432 SNPDEATKAVTEMNQKMIEGKPLYVALAQ-RKDVRKNQLEATIQARNQLRMQQQQQQQFG 490
Query: 388 GTAYGSVSTGLGVAAGAGLQQPMIY---GRGQM--PAGM 421
G ++ G QQPM++ GRGQM PAGM
Sbjct: 491 GIPQMFIAPG---------QQPMMFPAGGRGQMPFPAGM 520
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 127/274 (46%), Gaps = 14/274 (5%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 55 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 114
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KG+ R S+ + L FI N+ + K G +
Sbjct: 115 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 173
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + + K
Sbjct: 174 SCKVAQDEYGNSKGYGF---VHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSK 230
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGK-RDFGFIHYAER 330
+ +YVKN+ ++ T ++ + LF+++GE+T ++ ++GK R FGF+++++
Sbjct: 231 FEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDH 290
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A A++ +YE+ GQ L V A+ + + E
Sbjct: 291 EAASAAVEALNEYELKGQKLYVGRAQKKHEREEE 324
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 93/384 (24%), Positives = 150/384 (39%), Gaps = 54/384 (14%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + +++ + +D ++E+ R L E GE+ L +D ++G+S+GF
Sbjct: 224 KKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFG 283
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIEDV 207
FV F E A A++ L + KG+ +L++G K E+E RK E
Sbjct: 284 FVNFSDHEAASAAVEALNEYELKGQ-----------KLYVGRAQKKHEREEELRKQYE-- 330
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAE-- 265
IE Q + LY N D +K+ F GN +
Sbjct: 331 ---AARIEKASKYQGVN--------LYIKNLSDDIDDEKLREL-FSSYGNITSAKVMREA 378
Query: 266 ----PKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD 321
P A + K E K E + E T+ T K K+
Sbjct: 379 IVDAPAEAEKDKEADKEKAKKEAGDKSEEKGEAKSESEDKSKSEEKTEGKTESAKPEKKH 438
Query: 322 F------GFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHP 375
GF+ ++ A KA+ + + + G+ L VALA+ + ++++ S A
Sbjct: 439 LGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLEASIQA---R 495
Query: 376 SGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYG--RGQMPAGMH-MVPMVLPDGR 432
+ + + AG A + V GA QQ + G RG AG MV +P GR
Sbjct: 496 NTIRQQQVAAAAGMAQPFMQP--AVFYGAPGQQGFLPGAQRGMQFAGQAGMVMPGMPSGR 553
Query: 433 IGYVLQQPGVQ--------MPLPP 448
G Q PG Q PLPP
Sbjct: 554 PGQFPQFPGQQGGRGMNPNQPLPP 577
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 98/365 (26%), Positives = 157/365 (43%), Gaps = 53/365 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+F+ L + + L D G + +V DK +G SKG+ +V + + E A AI++L
Sbjct: 99 IFVKNLHEGIDNKQLYDTFSLFGNILSCKVVTDKATGLSKGYGYVHYETNEAAASAIEKL 158
Query: 166 CSKDFKGKTIRCSM-SETNNR--------LFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
GK ++ + +NR +FI N+P WTE + R+ E G V
Sbjct: 159 DGMLIDGKEVQVGVFMRRDNRPGQADWTNVFIKNIPFEWTEDKLREEFEGFGEVVSA--- 215
Query: 217 IKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKL--DGNTPT----VSWAEPKSTP 270
P+ + GF FV + + A + ++M F + DG T V A+ K+
Sbjct: 216 --KPKEVQGSLGFGFVNFATHEAAAAAVKEMNDKEFTVTEDGEEVTKVLFVGRAQKKAER 273
Query: 271 DHSAAAASQVKA-----------LYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSG 318
+ A + + LYVKNL + T L++ F G +T V K+G
Sbjct: 274 ERELRAKYEAEKIDRIAKFQGVNLYVKNLDDTVTDDVLRDEFSAMGTITSARVMKDLKTG 333
Query: 319 -KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSG 377
R FGF+ Y+ A +A+ + I G+ + VALA+ + +R + H
Sbjct: 334 ISRGFGFVCYSTPEDATRAVNEMNGKIILGKPIFVALAQRRDVRRAQ-----LEAQH--- 385
Query: 378 LPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVL 437
+ G G+ G G+ G G+ +P G G PA + VP ++ GR GY +
Sbjct: 386 --NQGRGNLPGPMGGAYP---GAVPMPGMYRP---GPGMQPA--YPVPQMM-QGRGGYGM 434
Query: 438 Q-QPG 441
Q QPG
Sbjct: 435 QAQPG 439
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 122/273 (44%), Gaps = 21/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ ++IG L + +E L ++ +G V + + +D + S G+A+V + A+RA+D
Sbjct: 9 ASLYIGDLLPEVNEGFLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQVADAERALD 68
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KGK R S+ + +F+ N+ + K+ G + + +
Sbjct: 69 SMNFTEIKGKPCRIMWSQRDPSMRRSGVGNIFVKNLHEGIDNKQLYDTFSLFG-NILSCK 127
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D +A ++G+ +V Y N A + +K+ +DG V + D+
Sbjct: 128 VVTD-KATGLSKGYGYVHYETNEAAASAIEKLDG--MLIDGKEVQVGVFMRR---DNRPG 181
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALK 335
A +++KN+P T +L+E F+ GEV P G FGF+++A +A
Sbjct: 182 QADWTN-VFIKNIPFEWTEDKLREEFEGFGEVVS-AKPKEVQGSLGFGFVNFATHEAAAA 239
Query: 336 AIKDTEKYEI----DGQVLEVALARPQTNKRTE 364
A+K+ E DG+ + L + K+ E
Sbjct: 240 AVKEMNDKEFTVTEDGEEVTKVLFVGRAQKKAE 272
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
E EK D++ G +++ L +++ LRD +G + ++KD +G S+GF
Sbjct: 282 EAEKIDRIAKF--QGVNLYVKNLDDTVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFG 339
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181
FV + + E A RA++E+ K GK I ++++
Sbjct: 340 FVCYSTPEDATRAVNEMNGKIILGKPIFVALAQ 372
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 126/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D +RGF FV + + A +Q + + N L N V KS + A
Sbjct: 130 VVCDEHG---SRGFGFVHFETHEAA---QQAINTMNGMLL-NDRKVFVGHFKSRREREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERS 331
A A + +YVKNLP + + L++LF + G++ V SG R FGF+++ +
Sbjct: 183 LGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ E+ G++L A+ + ++ E
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 69 INTEDAVEDEDKRT-ASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPI 127
INT + + D++ + +E+ +L A + +++ LP D E+ L+DL
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQF 214
Query: 128 GEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
G++ V +++D +SG S+ F FV F E A++A+ + K+ G+ +
Sbjct: 215 GKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 121/279 (43%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + +V D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ R +E R +++ N+P E+ + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPK-ST 269
++++++D SR GF N + +++ + N K + G A+ +
Sbjct: 219 -SVKVMRDNSGHSRCFGFV-----NFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVER 272
Query: 270 PDHSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q+K LYVKNL ++ +L++ F +G +T KV+T G S
Sbjct: 273 QNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
>gi|326505362|dbj|BAK03068.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 601
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 81/147 (55%), Gaps = 10/147 (6%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV--- 157
P ++F G +P++ E +LRD+ E G VF++ +++DK +GESKG FV F S++
Sbjct: 34 PDAIKMFCGQIPRNMHEAELRDMFEQFGPVFQLNVLRDKQTGESKGCCFVTFYSRKSALD 93
Query: 158 AKRAIDELCSKDFKGKTIRCSMSETNNR----LFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
A+ A+ L + + I+ ++T NR LF+G V K+ E R + + G ++
Sbjct: 94 AQNALHNLRTLNGSHHPIQMKPADTENRNERKLFVGMVSKNLDEPNIRSLFQSYG-TIED 152
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACA 240
+++D A ++RG AFV + CA
Sbjct: 153 CTVLRD--ANGKSRGCAFVTFQKRQCA 177
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
P G+ +FI LP++ ++ DL G++ + DK + SK F FV+F + A+
Sbjct: 478 PDGANLFIYHLPQEYNDTDLAQAFASYGQIISAKVFVDKTTNRSKCFGFVSFDNPASAQA 537
Query: 161 AIDEL 165
AI+++
Sbjct: 538 AINQM 542
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 124/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LKELF + G V + GK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDEGGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 125/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDEGG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L++L G V ++ D + G+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTD-EGGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 129/277 (46%), Gaps = 23/277 (8%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
H + +++G L +E L +L IG+V + + +D + S G+A+V + + +RA
Sbjct: 59 HSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 118
Query: 162 IDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDT 213
+++L KG+ R S+ + L FI N+ + K G + +
Sbjct: 119 LEDLNYTSIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFSQFG-NILS 177
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT-----VSWAEPKS 268
++ +D S +G+ FV Y A+ + Q + S N L + ++ + +S
Sbjct: 178 CKVAQDELGNS--KGYGFVHY---ETAEAANQAIKSVNGMLLNDKKVFVGHHIAKRDRQS 232
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHY 327
+ A + V Y+KN+ E+ + ++ +LF+ +GEV ++GK R FGF+++
Sbjct: 233 KLEEMKANFTNV---YIKNIDESVSDEEFTKLFEPYGEVVSATITRDENGKSRGFGFVNF 289
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A SA KA+++ E G+ L V A+ + + E
Sbjct: 290 ASHESAAKAVEELNDKEFHGKKLYVGRAQKKHEREEE 326
>gi|82595449|ref|XP_725855.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481012|gb|EAA17420.1| polyA binding protein-related [Plasmodium yoelii yoelii]
Length = 859
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 123/263 (46%), Gaps = 21/263 (7%)
Query: 99 LPPHGS--EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
+PP S +++G L +D +E L ++ +G V + + +D + +S G+A+V + +
Sbjct: 9 MPPSFSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLA 68
Query: 157 VAKRAIDELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVG 208
A+RA+D L + KG+ R S + +F+ N+ K+ K G
Sbjct: 69 DAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFG 128
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
+ + ++ D S+N G FV Y + A + +K+ +L V KS
Sbjct: 129 -NILSCKVATDEFGKSKNYG--FVHYEDEESAKEAIEKVNG--MQLGSKNVYVGHFIKKS 183
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYA 328
A ++ LYVKN P+ T LK+LF +GE+T ++ + R F FI+Y+
Sbjct: 184 ---ERATNDTKFTNLYVKNFPDTVTEAHLKQLFSPYGEITSMIV-KSDNKNRKFCFINYS 239
Query: 329 ERSSALKAIKDTEKYEI--DGQV 349
+ SA A+++ +I DG++
Sbjct: 240 DADSARNAMENLNGKKITEDGKI 262
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G ++I L +++ L++L EP G + ++KD D +SKGF FV F + E A +A+
Sbjct: 409 GVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKD-DKDQSKGFGFVCFGTHEEANKAV 467
Query: 163 DELCSKDFKGKTIRCSMSE 181
E+ K GK + ++E
Sbjct: 468 TEMHLKIINGKPLYVGLAE 486
Score = 45.1 bits (105), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGKRDFGFIHYAERSSALKAIKDTE 341
LY+KNL ++ + LKELF+ +G +T V K + FGF+ + A KA+ +
Sbjct: 412 LYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMH 471
Query: 342 KYEIDGQVLEVALA 355
I+G+ L V LA
Sbjct: 472 LKIINGKPLYVGLA 485
>gi|154275140|ref|XP_001538421.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
gi|150414861|gb|EDN10223.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
Length = 732
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 123/274 (44%), Gaps = 14/274 (5%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KGK R S+ + L FI N+ + K G +
Sbjct: 112 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 170
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + + K
Sbjct: 171 SCKVAQDEFGNSKGYGF---VHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSK 227
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGK-RDFGFIHYAER 330
+ +YVKNL + ++ +ELF+++GE+T ++ G++GK R FGF ++ +
Sbjct: 228 FEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFFYFLKH 287
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA A+++ E GQ L V A+ + + E
Sbjct: 288 ESAAAAVEELNDKEYKGQKLYVGRAQKKHEREEE 321
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 96/395 (24%), Positives = 163/395 (41%), Gaps = 76/395 (19%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + V++ L + S E+ R+L E GE+ + +D ++G+S+GF
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFG 280
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIEDV 207
F F E A A++EL K++KG+ +L++G K E+E RK E
Sbjct: 281 FFYFLKHESAAAAVEELNDKEYKGQ-----------KLYVGRAQKKHEREEELRKQHEAA 329
Query: 208 G-------PGVDT-IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKM-----TSANFKL 254
GV+ ++ + D + R F+ + N A R S K
Sbjct: 330 RVEKASKYQGVNLYVKNLTDDIDDEKLRDL-FISFGNITSARVMRDTAGDPGSESEKEKE 388
Query: 255 DGNTPTVS-WAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTP 313
N V A+ +S + SA + +V+ K+ +N T K+L
Sbjct: 389 SANKENVKDEAKKESGEEDSADKSDKVE----KSDSKNATEKKL---------------- 428
Query: 314 PGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGV 373
GKS + FGF+ ++ A KA+ + + ++G+ L VALA+ + ++++ S A
Sbjct: 429 -GKS--KGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQA-- 483
Query: 374 HPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRI 433
+ VAA AG+ QP + P G R
Sbjct: 484 ------------------RNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGFIPANAAQRG 525
Query: 434 GYVL-QQPGVQMP-LPPPRPRRVERG----PGGRG 462
G QQPG+ +P +P RP + G GGRG
Sbjct: 526 GMAFGQQPGMVIPGIPGGRPGQFAAGFPGQQGGRG 560
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 136/314 (43%), Gaps = 30/314 (9%)
Query: 64 ANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDL 123
ANG+ INT D T + + + ++ + +++G L +E L +L
Sbjct: 17 ANGAQINTNVPAASGDAPTPTTAAQQAHQN---------SASLYVGELDPSVTEAMLFEL 67
Query: 124 CEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN 183
IG+V + + +D + S G+A+V + S E ++A++EL KGK R S+ +
Sbjct: 68 FSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRD 127
Query: 184 NRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYY 235
L FI N+ + K G + + ++ +D S +G+ FV Y
Sbjct: 128 PALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG-NILSCKVAQDELGNS--KGYGFVHYE 184
Query: 236 NNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKA----LYVKNLPEN 291
A+ + + + L+ V PK + ++KA +YVKN+ +
Sbjct: 185 TAEAANNAIKHVNG--MLLNEKKVFVGHHIPKK---ERMSKFEEMKANFTNIYVKNIDLD 239
Query: 292 TTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVL 350
T + +ELF++HG++T GK R FGF++Y +A A+ E GQ L
Sbjct: 240 VTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKL 299
Query: 351 EVALARPQTNKRTE 364
V A+ + + E
Sbjct: 300 YVGRAQKKHEREEE 313
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 96/400 (24%), Positives = 155/400 (38%), Gaps = 100/400 (25%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + L D G + + +D + G SKG+ FV + + E A AI +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 166 C------SKDFKGKTI----RCS----MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G I R S M +++ N+ T+++FR++ E G +
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHG-DI 255
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ + +D Q SR GF FV Y + A + + FK G V A+ K +
Sbjct: 256 TSASIARDDQGKSR--GFGFVNYIRHEAAAVAVDHLNDIEFK--GQKLYVGRAQKKHERE 311
Query: 272 H-------SAAAASQVK----ALYVKNLPENTTTKQLKELF------------------- 301
+A Q K LY+KNL ++ ++L+++F
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVILRDEEKK 371
Query: 302 ----------------------------QRHGEVTKV---VTPPGKS---GK-RDFGFIH 326
+++GE TK VT G+ GK + FGF+
Sbjct: 372 DEEEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAGDKVTIKGEKKILGKSKGFGFVC 431
Query: 327 YAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSF 386
++ A KA+ + + I+G+ L VALA+ + + R + + + + F
Sbjct: 432 FSNPDEATKAVTEMNQKMIEGKPLYVALAQ-RKDVRKNQLEATIQARNQLRMQQQQQQQF 490
Query: 387 AGTAYGSVSTGLGVAAGAGLQQPMIY---GRGQM--PAGM 421
G ++ G QQPM+Y RGQM PAGM
Sbjct: 491 GGIPQMFIAPG---------QQPMMYPPGARGQMPFPAGM 521
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 127/274 (46%), Gaps = 14/274 (5%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 71 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 130
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KG+ R S+ + L FI N+ + K G +
Sbjct: 131 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 189
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + + K
Sbjct: 190 SCKVAQDEYGNSKGYGF---VHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSK 246
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGK-RDFGFIHYAER 330
+ +YVKN+ ++ T ++ + LF+++GE+T ++ ++GK R FGF+++++
Sbjct: 247 FEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDH 306
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A A++ +YE+ GQ L V A+ + + E
Sbjct: 307 EAASAAVEALNEYELKGQKLYVGRAQKKHEREEE 340
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 97/399 (24%), Positives = 156/399 (39%), Gaps = 66/399 (16%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + +++ + +D ++E+ R L E GE+ L +D ++G+S+GF
Sbjct: 240 KKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFG 299
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIEDV 207
FV F E A A++ L + KG+ +L++G K E+E RK E
Sbjct: 300 FVNFSDHEAASAAVEALNEYELKGQ-----------KLYVGRAQKKHEREEELRKQYE-- 346
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAE-- 265
IE Q + LY N D +K+ F GN +
Sbjct: 347 ---AARIEKASKYQGVN--------LYIKNLSDDIDDEKLREL-FSSYGNITSAKVMREA 394
Query: 266 ----PKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD 321
P T A + K E +K E + E T+ T K K+
Sbjct: 395 IVDVPAETEKDKEADKEKAKKETGDKSEEKGESKSESEDKSKSEEKTEGKTESAKPEKKH 454
Query: 322 ------FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHP 375
FGF+ ++ A KA+ + + + G+ L VALA+ + ++++ V +
Sbjct: 455 LGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQ-VSTKVIHFLR 513
Query: 376 SGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMI-----YG------------RGQMP 418
S + + Y A + VAA AG+ QP + YG RG
Sbjct: 514 SQVTNI-YQLEASIQARNTIRQQQVAAAAGMAQPFMQPAVFYGAPGQQGFLPGAQRGMQF 572
Query: 419 AGMH-MVPMVLPDGRIGYVLQQPGVQ--------MPLPP 448
AG MV +P GR G Q PG Q PLPP
Sbjct: 573 AGQAGMVMPGMPGGRPGQFPQFPGQQGGRGMNPNQPLPP 611
>gi|19111886|ref|NP_595094.1| mRNA cleavage factor complex subunit (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74676196|sp|O94432.1|YHKF_SCHPO RecName: Full=Uncharacterized RNA-binding protein C660.15
gi|4049514|emb|CAA22535.1| mRNA cleavage factor complex subunit (predicted)
[Schizosaccharomyces pombe]
Length = 474
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 19/174 (10%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++FIGGL + +++ LRD E GEV + +++D +G S+GF F+ F++ + ++E
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKN----PKCVNE 219
Query: 165 LCSKD--FKGKTIRCSMS------ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVD-TIE 215
+ SK+ GK I + E ++F+G VP TE+EFR G +D T+
Sbjct: 220 VMSKEHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLM 279
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST 269
+ KD P RGF FV Y N + + + M+ + G V A PK++
Sbjct: 280 MDKDTGRP---RGFGFVTYENESAVEAT---MSQPYITIHGKPVEVKRATPKAS 327
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+++F+GG+P D +EE+ R+ G V + L+ DKD+G +GF FV + ++ + +
Sbjct: 247 AKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMS 306
Query: 164 E 164
+
Sbjct: 307 Q 307
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 141/314 (44%), Gaps = 30/314 (9%)
Query: 64 ANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDL 123
ANG+ INT A + T + + H+Q + + +++G L +E L +L
Sbjct: 17 ANGAQINTNVAAAQAEAPTPTSA---APAHNQ------NSASLYVGELDPSVTEAMLFEL 67
Query: 124 CEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN 183
IG+V + + +D + S G+A+V + S E ++A++EL KGK R S+ +
Sbjct: 68 FSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRD 127
Query: 184 NRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYY 235
L FI N+ + K G + + ++ +D S +G+ FV Y
Sbjct: 128 PALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG-NILSCKVAQDELGNS--KGYGFVHYE 184
Query: 236 NNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKA----LYVKNLPEN 291
A+ + + + L+ V PK + ++KA +YVKN+ +
Sbjct: 185 TAEAANNAIKHVNG--MLLNEKKVFVGHHIPKK---ERMSKFEEMKANFTNIYVKNIDLD 239
Query: 292 TTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVL 350
+ ++ +ELF++HG++T + GK R FGF++Y + +A A+ + GQ L
Sbjct: 240 VSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKL 299
Query: 351 EVALARPQTNKRTE 364
V A+ + + E
Sbjct: 300 YVGRAQKKHEREEE 313
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 94/399 (23%), Positives = 156/399 (39%), Gaps = 99/399 (24%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + L D G + + +D + G SKG+ FV + + E A AI +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 166 C------SKDFKGKTI----RCS----MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G I R S M +++ N+ +++EFR++ E G +
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHG-DI 255
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ + +D Q ++RGF FV Y + A + + +F+ G V A+ K +
Sbjct: 256 TSASIARDEQG--KSRGFGFVNYIKHEAASAAVDALNDTDFR--GQKLYVGRAQKKHERE 311
Query: 272 H-------SAAAASQVK----ALYVKNLPENTTTKQLKELFQRHGEVT--KVV------- 311
+A Q K LY+KNL ++ ++L+++F G +T KV+
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAE 371
Query: 312 ---TP-------------------PGKSGKRD----------------------FGFIHY 327
TP G K+D FGF+ +
Sbjct: 372 RSETPGDEKKEEAKEESEKTEESNEGADDKKDENKPGEKVTIKGEKKILGKSKGFGFVCF 431
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFA 387
+ A KA+ + + I+G+ L VALA+ + + R + + + + F
Sbjct: 432 SNPDEATKAVTEMNQKMIEGKPLYVALAQ-RKDVRKNQLEATIQARNQLRMQQQQQQQFG 490
Query: 388 GTAYGSVSTGLGVAAGAGLQQPMIY---GRGQM--PAGM 421
G ++ G QQPM++ GRGQM PAGM
Sbjct: 491 GIPQMFIAPG---------QQPMMFPAGGRGQMPFPAGM 520
>gi|68070939|ref|XP_677383.1| polyadenylate-binding protein [Plasmodium berghei strain ANKA]
gi|56497479|emb|CAH95361.1| polyadenylate-binding protein, putative [Plasmodium berghei]
Length = 833
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 123/263 (46%), Gaps = 21/263 (7%)
Query: 99 LPPHGS--EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
+PP S +++G L +D +E L ++ +G V + + +D + +S G+A+V + +
Sbjct: 9 MPPSFSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLA 68
Query: 157 VAKRAIDELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVG 208
A+RA+D L + KG+ R S + +F+ N+ K+ K G
Sbjct: 69 DAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFG 128
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
+ + ++ D S+N G FV Y + A + +K+ +L V KS
Sbjct: 129 -NILSCKVATDEFGKSKNYG--FVHYEDEESAKEAIEKVNG--MQLGSKNVYVGHFIKKS 183
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYA 328
A ++ LYVKN P+ T LK+LF +GE+T ++ + R F FI+Y+
Sbjct: 184 ---ERATNDTKFTNLYVKNFPDTVTEAHLKQLFSPYGEITSMIV-KSDNKNRKFCFINYS 239
Query: 329 ERSSALKAIKDTEKYEI--DGQV 349
+ SA A+++ +I DG++
Sbjct: 240 DADSARNAMENLNGKKITEDGKI 262
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G ++I L +++ L++L EP G + ++KD D +SKGF FV F + E A +A+
Sbjct: 406 GVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKD-DKDQSKGFGFVCFGTHEEANKAV 464
Query: 163 DELCSKDFKGKTIRCSMSE 181
E+ K GK + ++E
Sbjct: 465 TEMHLKIINGKPLYVGLAE 483
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGKRDFGFIHYAERSSALKAIKDTE 341
LY+KNL ++ + LKELF+ +G +T V K + FGF+ + A KA+ +
Sbjct: 409 LYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMH 468
Query: 342 KYEIDGQVLEVALA 355
I+G+ L V LA
Sbjct: 469 LKIINGKPLYVGLA 482
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 127/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + +G+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEVIRGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D +RGF FV + + A +Q + + N L N V KS + A
Sbjct: 130 VVCDNHG---SRGFGFVHFETHEAA---QQAIVTMNGMLL-NDRKVFVGHFKSRREREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERS 331
A A + +YVKNL + + L++LF + G++ V SG R FGF+++ +
Sbjct: 183 LGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ D E+ G++L V A+ + ++ E
Sbjct: 243 EAQKAVTDMNGKEVRGRLLYVGRAQKRVERQNE 275
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 122/279 (43%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + +V D S+GF FV F + E A++AI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDNHG--SRGFGFVHFETHEAAQQAIVTM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ R +E R +++ N+ E+ + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKML 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPK-ST 269
++++++D SR GF FV N + +++ +T N K + G V A+ +
Sbjct: 219 -SVKVMRDDSGHSR--GFGFV---NFEKHEEAQKAVTDMNGKEVRGRLLYVGRAQKRVER 272
Query: 270 PDHSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q+K LYVKNL ++ ++L+ F +G +T KV+T G S
Sbjct: 273 QNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRREFSPYGVITSAKVMTEGGHS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 127/274 (46%), Gaps = 14/274 (5%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 55 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 114
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KG+ R S+ + L FI N+ + K G +
Sbjct: 115 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 173
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + + K
Sbjct: 174 SCKVAQDEYGNSKGYGF---VHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSK 230
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGK-RDFGFIHYAER 330
+ +YVKN+ ++ T ++ + LF+++GE+T ++ ++GK R FGF+++++
Sbjct: 231 FEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDH 290
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A A++ +YE+ GQ L V A+ + + E
Sbjct: 291 EAASAAVEALNEYELKGQKLYVGRAQKKHEREEE 324
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 96/384 (25%), Positives = 155/384 (40%), Gaps = 55/384 (14%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + +++ + +D ++E+ R L E GE+ L +D ++G+S+GF
Sbjct: 224 KKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFG 283
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIEDV 207
FV F E A A++ L + KG+ +L++G K E+E RK E
Sbjct: 284 FVNFSDHEAASAAVEALNEYELKGQ-----------KLYVGRAQKKHEREEELRKQYE-- 330
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAE-- 265
IE Q + LY N D +K+ F GN +
Sbjct: 331 ---AARIEKASKYQGVN--------LYIKNLSDDIDDEKLREL-FSSYGNITSAKVMREA 378
Query: 266 ----PKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRD 321
P T A + K K+ E +K E + E ++ T K KR
Sbjct: 379 IVDVPAETEKGKEADKEKAKEAGDKS-EEKGESKSESEDKSKSEEKSEGKTESAKPEKRH 437
Query: 322 ------FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHP 375
FGF+ ++ A KA+ + + + G+ L VALA+ + ++++ S A
Sbjct: 438 LGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLEASIQA---R 494
Query: 376 SGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYG--RGQMPAGMH-MVPMVLPDGR 432
+ + + AG A + V GA QQ + G RG AG MV +P GR
Sbjct: 495 NTIRQQQVAAAAGMAQPFMQP--AVFYGAPGQQGFLPGAQRGMQFAGQAGMVMPGMPGGR 552
Query: 433 IGYVLQQPGVQ--------MPLPP 448
G Q PG Q PLPP
Sbjct: 553 PGQFPQFPGQQGGRGMNPNQPLPP 576
>gi|399217460|emb|CCF74347.1| unnamed protein product [Babesia microti strain RI]
Length = 679
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 114/248 (45%), Gaps = 20/248 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L + +E L ++ IG V + + +D + +S G+A+V + + A+RA++
Sbjct: 41 ASLYVGDLSPEVTEAILYEIFNTIGPVASIRVCRDSITRKSLGYAYVNYHNVNDARRALE 100
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L + GK +R S + L FI N+ +S K G + + +
Sbjct: 101 ALKYNEICGKQVRIMWSHRDPSLRKSGAGNVFIKNIDESIDTKALYDAFSPYGQ-ILSCK 159
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGN-----TPTVSWAEPKSTP 270
+ D R+RG+ FV + A A + ++ AN GN P V +E S+
Sbjct: 160 VATDETG--RSRGYGFVHFDTEANAT---RAISDANGMQLGNKKIFVAPFVRRSERVSST 214
Query: 271 DHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAER 330
+ LYV+N PEN + LKE F GE+T ++ G R F FI+YAE
Sbjct: 215 KLEDGVDEKFTNLYVRNFPENWNEEILKENFSPFGEITSMMMKSDPLG-RKFAFINYAEN 273
Query: 331 SSALKAIK 338
S A AI+
Sbjct: 274 SMAKAAIE 281
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 81/367 (22%), Positives = 139/367 (37%), Gaps = 73/367 (19%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI + + + L D P G++ + D ++G S+G+ FV F ++ A RAI +
Sbjct: 131 VFIKNIDESIDTKALYDAFSPYGQILSCKVATD-ETGRSRGYGFVHFDTEANATRAISDA 189
Query: 166 CSKDFKGKTIRCS-----------------MSETNNRLFIGNVPKSWTEKEFRKVIEDVG 208
K I + + E L++ N P++W E+ ++ G
Sbjct: 190 NGMQLGNKKIFVAPFVRRSERVSSTKLEDGVDEKFTNLYVRNFPENWNEEILKENFSPFG 249
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKL-DGNTPTVSWAEPK 267
+ ++ + DP R FAF+ Y N+ A + + M +F + G+ T+ +
Sbjct: 250 E-ITSMMMKSDPLG----RKFAFINYAENSMAKAAIETMNGKDFSIKSGDKSTIEGEDTD 304
Query: 268 STPDHSAAAASQVKA-------------------------LYVKNLPENTTTKQLKELFQ 302
+ A Q +A LY+KNL ++ +L+ELF+
Sbjct: 305 KSETKLLVCAHQDRARRHAMLKAKYDSMHAENKSKYQGVNLYIKNLDDSINDAELRELFE 364
Query: 303 RHGEVTKVVTPPGKSGKR-DFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA--RPQT 359
G +T + G FGF+ + A A+ + + + L V LA R Q
Sbjct: 365 GFGLITSCKVMVDEHGASLGFGFVCFVSPEDATHAVSEMHLKLVHNKPLYVGLAEKREQR 424
Query: 360 NKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPA 419
R + Y G + G+P +G+ G+ PM G MP
Sbjct: 425 LNRLQMRYKV--GHNRDGMP------------------MGMLPPHGMMPPMHMGVPMMPV 464
Query: 420 -GMHMVP 425
G +M P
Sbjct: 465 NGQYMYP 471
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 126/277 (45%), Gaps = 24/277 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +DK + S G+A+V ++ AKRA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL------------FIGNVPKSWTEKEFRKVIEDVGPGV 211
L KG+ +R S+ + L FI N+ KS K G +
Sbjct: 71 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGGGVGNIFIKNLDKSIDNKALYDTFSAFG-NI 129
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ +++ D ++G+ FV + A+ + +KM N V KS +
Sbjct: 130 LSCKVVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKE 182
Query: 272 HSA---AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHY 327
A A A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ +
Sbjct: 183 REAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSF 242
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 279
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 138 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 197
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 198 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 256
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 257 GKELNGKQI 265
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 105 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 162
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ + + GP +
Sbjct: 163 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 222
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 223 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 277
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 278 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 336
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 337 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 373
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 122/274 (44%), Gaps = 14/274 (5%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 52 PHSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KGK R S+ + L FI N+ + K G +
Sbjct: 112 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 170
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + + K
Sbjct: 171 SCKVAQDEFGNSKGYGF---VHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSK 227
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGK-RDFGFIHYAER 330
+ +YVKNL T ++ +ELF ++G++T +T ++GK R FGF+++ +
Sbjct: 228 FEEMKANFTNVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKH 287
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA A+++ E GQ L V A+ + + E
Sbjct: 288 ESAAAAVEELNDKEFKGQKLYVGRAQKKHEREEE 321
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 12/115 (10%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + V++ L + E+ R+L G++ + D ++G+S+GF
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFG 280
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRK 202
FV F E A A++EL K+FKG+ +L++G K E+E RK
Sbjct: 281 FVNFVKHESAAAAVEELNDKEFKGQ-----------KLYVGRAQKKHEREEELRK 324
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 136/308 (44%), Gaps = 26/308 (8%)
Query: 71 TEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEV 130
TE VE + S SED+ P + +++G L SE L D+ PIG V
Sbjct: 5 TEKTVEQLENLKISESEDQPSTTTSTETSP---ASLYVGELDPTVSEALLYDIFSPIGSV 61
Query: 131 FEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN------- 183
+ + +D + S G+A+V F E K+AI++L KG+ R S+ +
Sbjct: 62 SSIRVCRDAVTKTSLGYAYVNFNDHEAGKKAIEQLNYTPIKGRLCRIMWSQRDPALRKKG 121
Query: 184 -NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADY 242
+FI N+ K + G + + ++ D S +GF FV + + + A
Sbjct: 122 SGNIFIKNLHPDIDNKALFETFSVFG-NILSSKIATDETGKS--KGFGFVHFEHESSA-- 176
Query: 243 SRQKMTSAN-FKLDGN----TPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQL 297
++ + + N L+G P ++ E S + + A + V YVKN+ TT ++
Sbjct: 177 -KEAIDALNGMLLNGQEIYVAPHLTRKERDSQLEETKAHFTNV---YVKNINLETTDEEF 232
Query: 298 KELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
ELF ++G V + GK + FGF+ + + A KA+++ E Q L V+ A+
Sbjct: 233 NELFAKYGNVLSSSLEKTEDGKLKGFGFVDFEKHEDAAKAVEELNGTEFKDQTLFVSRAQ 292
Query: 357 PQTNKRTE 364
+ + E
Sbjct: 293 KKYERMQE 300
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 135/295 (45%), Gaps = 35/295 (11%)
Query: 98 ALPPHGS-EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
AL GS +FI L D + L + G + + D ++G+SKGF FV F +
Sbjct: 116 ALRKKGSGNIFIKNLHPDIDNKALFETFSVFGNILSSKIATD-ETGKSKGFGFVHFEHES 174
Query: 157 VAKRAIDELCSKDFKGKTIRCS-----------MSETN---NRLFIGNVPKSWTEKEFRK 202
AK AID L G+ I + + ET +++ N+ T++EF +
Sbjct: 175 SAKEAIDALNGMLLNGQEIYVAPHLTRKERDSQLEETKAHFTNVYVKNINLETTDEEFNE 234
Query: 203 VIEDVGPGVDT-IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTV 261
+ G + + +E +D + +GF FV + + A + +++ FK T V
Sbjct: 235 LFAKYGNVLSSSLEKTED----GKLKGFGFVDFEKHEDAAKAVEELNGTEFK--DQTLFV 288
Query: 262 SWAEPKS------TPDHSAA-----AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV 310
S A+ K + A+ A Q L+VKNL ++ ++LKE F +G +T V
Sbjct: 289 SRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFVKNLDDSIDDEKLKEEFAPYGTITSV 348
Query: 311 VTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+GK + FGF+ ++ A KAI + + + G+ L VA+A+ + +R++
Sbjct: 349 RVMRTDNGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 403
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
+ D +RGF FV + + A +Q + + N L N V KS + A
Sbjct: 130 VACDEHG---SRGFGFVHFETHEAA---QQAINTMNGMLL-NDRKVFVGHFKSRREREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERS 331
A A + +YVKNLP + + L+ELF + G++ V SG R FGF+++ +
Sbjct: 183 LGARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ E+ G++L A+ + ++ E
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 121/279 (43%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + + D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ R +E R +++ N+P E+ +++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQELFSQFGKML 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPK-ST 269
++++++D SR GF N + +++ + N K + G A+ +
Sbjct: 219 -SVKVMRDNSGHSRCFGFV-----NFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVER 272
Query: 270 PDHSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q+K LYVKNL ++ +L++ F +G +T KV+T G S
Sbjct: 273 QNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
>gi|323305308|gb|EGA59055.1| Pab1p [Saccharomyces cerevisiae FostersB]
gi|323333819|gb|EGA75210.1| Pab1p [Saccharomyces cerevisiae AWRI796]
Length = 466
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 133/285 (46%), Gaps = 32/285 (11%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L D + L D G++ + D ++G+SKGF FV F + AK AID L
Sbjct: 17 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 75
Query: 166 CSKDFKGKTIRCS-----------MSETN---NRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
G+ I + + ET L++ N+ T+++F+++ GP V
Sbjct: 76 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 135
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ L KD A + +GF FV Y + A + + + + +L+G V A+ K+
Sbjct: 136 -SASLEKD--ADGKLKGFGFVNYEKHEDAVKAVEALNDS--ELNGEKLYVGRAQKKNERM 190
Query: 272 H-----------SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK- 319
H A Q L+VKNL ++ ++L+E F +G +T ++GK
Sbjct: 191 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS 250
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ FGF+ ++ A KAI + + + G+ L VA+A+ + +R++
Sbjct: 251 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 295
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 122/273 (44%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIDKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LKE F ++G V GK R FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ D +++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTE 275
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 122/289 (42%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAID++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G +D
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGARAKEFTNVYIKNFGEDMDDER 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
+++++ D ++RGF FV + + A + M + L+G
Sbjct: 207 LKEWFGQYGAALSVKVMTDDHG--KSRGFGFVSFERHEDAQKAVDDMNGKD--LNGKAIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K Q LYVKNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMMEGGRS--KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVEDE-DKRTASISEDEK----------EKHDQLLALPPHGSEV 106
E+ S G H T++A E DK + D K E+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L++ G V ++ D D G+S+GF FV+F E A++A+D++
Sbjct: 194 YIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMN 252
Query: 167 SKDFKGKTI 175
KD GK I
Sbjct: 253 GKDLNGKAI 261
>gi|410076202|ref|XP_003955683.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
gi|372462266|emb|CCF56548.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
Length = 582
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 135/295 (45%), Gaps = 27/295 (9%)
Query: 75 VEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVG 134
++DE + S + E ++ D + + +++G L SE L D+ PIG V +
Sbjct: 17 IKDEQQNAPSSTGSEGQQSDS------NSTSLYVGDLDPSVSEALLYDIFSPIGSVTSIR 70
Query: 135 LVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSET--------NNRL 186
+ +D + S G+A+V F E K AI+ L KG+ R S+ N +
Sbjct: 71 VCRDAITKTSLGYAYVNFADHEAGKVAIERLNYTPIKGRLCRIMWSQRDPALRKKGNGNI 130
Query: 187 FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQK 246
FI N+ K G + + ++ D S +GF FV + A A +
Sbjct: 131 FIKNLNADIDNKALYDTFSVFG-NILSSKIATDENGNS--KGFGFVHFEEEAAAKEAIDA 187
Query: 247 MTSANFKLDGN----TPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQ 302
+ L+G P +S E S + + A + V YVKN+P +TT ++ KELF+
Sbjct: 188 LNG--MLLNGQEIYVAPHLSRKERDSQLEKTRANFTNV---YVKNVPLDTTEEEFKELFE 242
Query: 303 RHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ G+ + +V G+ GK + FGF++Y ALKA+++ E GQ L V A+
Sbjct: 243 KPGKTSSIVLEKGEDGKLKGFGFVNYENHEDALKAVEELNNTEFKGQELYVGRAQ 297
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 132/287 (45%), Gaps = 36/287 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L D + L D G + + D ++G SKGF FV F + AK AID L
Sbjct: 130 IFIKNLNADIDNKALYDTFSVFGNILSSKIATD-ENGNSKGFGFVHFEEEAAAKEAIDAL 188
Query: 166 CSKDFKGKTI----RCSMSETNNRL----------FIGNVPKSWTEKEFRKVIEDVGPGV 211
G+ I S E +++L ++ NVP TE+EF+++ E G
Sbjct: 189 NGMLLNGQEIYVAPHLSRKERDSQLEKTRANFTNVYVKNVPLDTTEEEFKELFEKPG--- 245
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
T ++ + + +GF FV Y N+ A + +++ + FK G V A+ K +
Sbjct: 246 KTSSIVLEKGEDGKLKGFGFVNYENHEDALKAVEELNNTEFK--GQELYVGRAQKKY--E 301
Query: 272 HSAAAASQVKA-------------LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG 318
A Q +A L++KNL ++ ++LKE F G +T ++G
Sbjct: 302 RMQALKQQYEATRLEKMAKYQGVNLFIKNLDDSIDDEKLKEEFAPFGTITSTKVMRTENG 361
Query: 319 K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
K + FGF+ ++ A KAI + + + G+ L VA+A+ + +R++
Sbjct: 362 KSKGFGFVCFSSPEEATKAITEKNQQIVAGKPLYVAIAQRKEVRRSQ 408
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +FI L +E L++ P G + +++ ++G+SKGF FV F S E A +A
Sbjct: 322 QGVNLFIKNLDDSIDDEKLKEEFAPFGTITSTKVMRT-ENGKSKGFGFVCFSSPEEATKA 380
Query: 162 IDELCSKDFKGKTIRCSMSE 181
I E + GK + ++++
Sbjct: 381 ITEKNQQIVAGKPLYVAIAQ 400
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 121/270 (44%), Gaps = 14/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ ++IG L D +E L + P G + + + +D + S +A++ F+ A+RA+D
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ +S K G + + +
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D +RG+ FV + + A+ + Q M D + + A
Sbjct: 130 VVCDEHG---SRGYGFVHFETHEAANRAIQTMNGMLLN-DRKVFVGHFKSRRERELEYGA 185
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
+ +Y+KN E+ K+L+E+F G V SG+ R FGF++Y A
Sbjct: 186 KVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQ 245
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + E++G+++ V A+ + +++E
Sbjct: 246 KAVSEMNGKEVNGRMIYVGRAQKRIERQSE 275
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 117/279 (41%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + + L D G + +V D+ S+G+ FV F + E A RAI +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTM 158
Query: 166 CSK----------DFKGKTIR-----CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
FK + R + E N ++I N + +K R++ G
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTN-VYIKNFGEDMDDKRLREIFSAFGNT 217
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK-ST 269
+ ++ D R+RGF FV Y N+ A + +M +++G V A+ +
Sbjct: 218 LSVKVMMDDS---GRSRGFGFVNYGNHEEAQKAVSEMNGK--EVNGRMIYVGRAQKRIER 272
Query: 270 PDHSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
Q+K LYVKNL + +L++ F +G +T KV+T G S
Sbjct: 273 QSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 122/274 (44%), Gaps = 14/274 (5%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 52 PHSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KGK R S+ + L FI N+ + K G +
Sbjct: 112 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 170
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + + K
Sbjct: 171 SCKVAQDEFGNSKGYGF---VHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSK 227
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGK-RDFGFIHYAER 330
+ +YVKNL T ++ +ELF ++G++T +T ++GK R FGF+++ +
Sbjct: 228 FEEMKANFTNVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKH 287
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA A+++ E GQ L V A+ + + E
Sbjct: 288 ESAAAAVEELNDKEFKGQKLYVGRAQKKHEREEE 321
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 12/115 (10%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + V++ L + + E+ R+L G++ + D ++G+S+GF
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFG 280
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRK 202
FV F E A A++EL K+FKG+ +L++G K E+E RK
Sbjct: 281 FVNFVKHESAAAAVEELNDKEFKGQ-----------KLYVGRAQKKHEREEELRK 324
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 121/270 (44%), Gaps = 14/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ ++IG L D +E L + P G + + + +D + S +A++ F+ A+RA+D
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ +S K G + + +
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D +RG+ FV + + A+ + Q M D + + A
Sbjct: 130 VVCDEHG---SRGYGFVHFETHEAANRAIQTMNGMLLN-DRKVFVGHFKSRRERELEYGA 185
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
+ +Y+KN E+ K+L+E+F G V SG+ R FGF++Y A
Sbjct: 186 KVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQ 245
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + E++G+++ V A+ + +++E
Sbjct: 246 KAVSEMNGKEVNGRMIYVGRAQKRIERQSE 275
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 117/279 (41%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + + L D G + +V D+ S+G+ FV F + E A RAI +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTM 158
Query: 166 CSK----------DFKGKTIR-----CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
FK + R + E N ++I N + +K R++ G
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTN-VYIKNFGEDMDDKRLREIFSAFGNT 217
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK-ST 269
+ ++ D R+RGF FV Y N+ A + +M +++G V A+ +
Sbjct: 218 LSVKVMMDDS---GRSRGFGFVNYGNHEEAQKAVSEMNGK--EVNGRMIYVGRAQKRIER 272
Query: 270 PDHSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
Q+K LYVKNL + +L++ F +G +T KV+T G S
Sbjct: 273 QSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 125/273 (45%), Gaps = 21/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L +D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIDKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LKE+F ++G V SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDSGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ D +++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDDMNGKDMNGKAIYVGRAK-KVERQTE 274
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 106/262 (40%), Gaps = 51/262 (19%)
Query: 58 EDQSPGANGSHINTEDAVEDE-DKRTASISEDEK----------EKHDQLLALPPHGSEV 106
E+ S G H T++A E DK + D K E+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+++ G V ++ D DSG+SKGF FV+F E A++A+D++
Sbjct: 194 YIKNFGEDMDDERLKEMFGKYGPALSVKVMTD-DSGKSKGFGFVSFERHEDAQKAVDDMN 252
Query: 167 SKDFKGKTIRCSMSETNNR-----------------------LFIGNVPKSWTEKEFRKV 203
KD GK I ++ R L++ N+ ++ RK
Sbjct: 253 GKDMNGKAIYVGRAKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKE 312
Query: 204 IEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVS- 262
G TI K R++GF FV C Y Q+M S P ++
Sbjct: 313 FSPFG----TITSAKVMMEGGRSKGFGFV------CFSYM-QRMASVRVP----NPVINP 357
Query: 263 WAEPKSTPDHSAAAASQVKALY 284
+ P S+ +A +Q +A Y
Sbjct: 358 YQPPPSSYFMAAIPPAQNRAAY 379
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 113/259 (43%), Gaps = 37/259 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAID++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ D +++GF FV + + A + M + ++G V A+
Sbjct: 219 SVKVMTDDS---GKSKGFGFVSFERHEDAQKAVDDMNGKD--MNGKAIYVGRAKKVERQT 273
Query: 272 HSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGK 319
Q+K LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS-- 331
Query: 320 RDFGFI--HYAERSSALKA 336
+ FGF+ Y +R ++++
Sbjct: 332 KGFGFVCFSYMQRMASVRV 350
>gi|340712736|ref|XP_003394911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Bombus
terrestris]
Length = 270
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 74/110 (67%), Gaps = 4/110 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G EVF G +PKD E++L L E G+++++ L+ D +G ++G+AF+ F ++E A+
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG 208
+A+ EL + + K GK ++ ++S N RLF+GN+PKS ++E ++E+ G
Sbjct: 219 QAVRELDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEE---ILEEFG 265
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 113/429 (26%), Positives = 180/429 (41%), Gaps = 68/429 (15%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + + D SG+SKG+ FV F ++E A++AI++L
Sbjct: 124 IFIKNLDKAIDHKALHDTFSSFGNILSCKVAVD-GSGQSKGYGFVQFDTEEAAQKAIEKL 182
Query: 166 C------SKDFKGKTIRCSMSETN------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
+ + G +R E+ N +F+ N+ +S T+ E +K + G + +
Sbjct: 183 NGMLLNDKQVYVGPFLRKQERESTGDRAKFNNVFVKNLSESTTDDELKKTFGEFG-TITS 241
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHS 273
+++D +++ F FV + + D +R K+D V A+ KS +H
Sbjct: 242 AVVMRD--GDGKSKCFGFVNF--ESTDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHE 297
Query: 274 -----------AAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGKR 320
AA Q LYVKNL ++ ++LKELF +G +T KV+ P R
Sbjct: 298 LKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGV-SR 356
Query: 321 DFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCA---------- 370
GF+ ++ A +A+ + + + L V LA+ + ++R A
Sbjct: 357 GSGFVAFSTPEEASRALLEMNGKMVASKPLYVTLAQRKEDRRARLQAQFAQMRPVSMPPS 416
Query: 371 ----AGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGR--GQMPAGMHMV 424
++P G P G F G ++ + G G QQ ++ G G P V
Sbjct: 417 VAPRMPMYPPGGPGMGQQIFYGQGPPAI---IPSQPGFGYQQQLVPGMRPGGAPVPNFFV 473
Query: 425 PMVLPDGRIGYVL----------QQPGVQMPLPPPR--PR-RVERGPGGRGASSGGSDGS 471
PMV + QQP +PL P + PR RV R P GRG G G
Sbjct: 474 PMVQQGQQGQRPGGRRGGGVQQSQQP---VPLMPQQMLPRGRVYRYPPGRGMPDGPMPGV 530
Query: 472 SGRRYR-PY 479
+G Y PY
Sbjct: 531 AGGMYSVPY 539
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 122/272 (44%), Gaps = 19/272 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L + ++ L DL +G+V V + +D + S G+ +V + + + A RA+D
Sbjct: 34 TSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALD 93
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L + IR S + +FI N+ K+ K G + + +
Sbjct: 94 VLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFG-NILSCK 152
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSA--NFKLDGNTPTVSWAEPKSTPDHS 273
+ D +++G+ FV + A + +K+ N K P + E +ST D
Sbjct: 153 VAVD--GSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTGDR- 209
Query: 274 AAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGKRDFGFIHYAERSS 332
++ ++VKNL E+TT +LK+ F G +T VV G + FGF+++
Sbjct: 210 ----AKFNNVFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDD 265
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A +A++ +ID + V A+ ++ + E
Sbjct: 266 AARAVEALNGKKIDDKEWYVGKAQKKSEREHE 297
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 142/320 (44%), Gaps = 32/320 (10%)
Query: 58 EDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASE 117
+D +P ANG+ I+T + T + ++ + + + +++G L +E
Sbjct: 12 QDSAP-ANGTQIDTNVGATQGEAPTPTTAQQAHQ----------NSASLYVGELDPSVTE 60
Query: 118 EDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177
L +L IG+V + + +D + S G+A+V + S E ++A++EL KGK R
Sbjct: 61 AMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRI 120
Query: 178 SMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGF 229
S+ + L FI N+ + K G + + ++ +D S +G+
Sbjct: 121 MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG-NILSCKVAQDEHGNS--KGY 177
Query: 230 AFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKA----LYV 285
FV Y A+ + + + L+ V PK + ++KA +YV
Sbjct: 178 GFVHYETAEAANNAIKHVNG--MLLNEKKVFVGHHIPKK---ERMSKFEEMKANFTNIYV 232
Query: 286 KNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYE 344
KN+ + T + ++LF++HG++T GK R FGF++Y + +A A++ E
Sbjct: 233 KNIDLDVTDDEFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASVAVETLNDTE 292
Query: 345 IDGQVLEVALARPQTNKRTE 364
GQ L V A+ + + E
Sbjct: 293 FHGQKLYVGRAQKKHEREEE 312
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 139/342 (40%), Gaps = 48/342 (14%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+KE+ + + + + +++ + D ++++ RDL E G++ + +D D G+S+GF
Sbjct: 213 KKERMSKFEEMKANFTNIYVKNIDLDVTDDEFRDLFEKHGDITSASIARD-DQGKSRGFG 271
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIEDV 207
FV + E A A++ L +F G+ +L++G K E+E RK E
Sbjct: 272 FVNYIKHEAASVAVETLNDTEFHGQ-----------KLYVGRAQKKHEREEELRKQYE-- 318
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK 267
L K + N LY N D +K+ F G +
Sbjct: 319 -----AARLEKQSKYQGVN------LYIKNLNDDVDDEKLRDM-FTPFGTITSAKVMRDA 366
Query: 268 STPDHSAAAASQVKALYVKNLPENTTTKQLKE-LFQRHGEVTKV---VTPPGKS---GK- 319
D S + + + + T + KE E TK VT G+ GK
Sbjct: 367 MPADRSDSPSDKKEEEKDGKEESKETEGEAKEDSTDDKKEDTKAGDKVTIKGEKKILGKS 426
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLP 379
+ FGF+ ++ A KA+ + + ++G+ L VALA+ + + R + + + +
Sbjct: 427 KGFGFVCFSNPDEATKAVTEMNQKMLEGKPLYVALAQ-RKDVRKNQLEATIQARNQLRMQ 485
Query: 380 HAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIY---GRGQMP 418
F G ++ G QQPM++ GRGQMP
Sbjct: 486 QQQQQQFGGIPQMFIAPG---------QQPMMFPPGGRGQMP 518
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDIKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDIKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ + + GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRVVATKPLYVALAQ 369
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 126/274 (45%), Gaps = 22/274 (8%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSK---E 156
P S +++G L KD +E L +L +G V + + +D + S G+A+V + S +
Sbjct: 19 PLANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQ 78
Query: 157 VAKRAIDELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVG 208
A RA++ L GK +R S + +FI N+ K+ K G
Sbjct: 79 AADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKTIDAKALHDTFSAFG 138
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
+ + ++ D S +G+ FV + + A AD + Q T +++G V + ++
Sbjct: 139 -KILSCKVATDANGVS--KGYGFVHFEDQAAADRAIQ--TVNQKEIEGKIVYVGPFQKRA 193
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGKRDFGFIHY 327
D + V +VKNLP + +L ++ HGE+T VV K G + FGFI++
Sbjct: 194 --DRPQDVYTNV---FVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKGFGFINF 248
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARPQTNK 361
+ SA K ++ + E+ G+ L A+ +T +
Sbjct: 249 KDAESAAKCVEYLNEREMSGKTLYAGRAQKKTER 282
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 119/279 (42%), Gaps = 26/279 (9%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G++ + D + G SKG+ FV F + A RAI +
Sbjct: 116 IFIKNLDKTIDAKALHDTFSAFGKILSCKVATDAN-GVSKGYGFVHFEDQAAADRAIQTV 174
Query: 166 CSKDFKGKTIRC--------SMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
K+ +GK + + +F+ N+P + E K+ + G + + ++
Sbjct: 175 NQKEIEGKIVYVGPFQKRADRPQDVYTNVFVKNLPADIGDDELGKMATEHGE-ITSAVVM 233
Query: 218 KDPQAPSRNRGFAFVLYYNN----ACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHS 273
KD + S+ GF F+ + + C +Y ++ S G + E ++
Sbjct: 234 KDDKGGSK--GFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQKKT--EREAMLRQK 289
Query: 274 AAAASQVKAL-------YVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFI 325
A + Q + L YVKNL + L+ELF G +T SGK + FGF+
Sbjct: 290 AEESKQERYLKYQGMNLYVKNLSDEVDDDALRELFANSGTITSCKVMKDGSGKSKGFGFV 349
Query: 326 HYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ A +A+ + + G+ L VALA+ + +R +
Sbjct: 350 CFTSHDEATRAVTEMNGKMVKGKPLYVALAQRKDVRRAQ 388
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
L G +++ L + ++ LR+L G + ++KD SG+SKGF FV F S + A
Sbjct: 299 LKYQGMNLYVKNLSDEVDDDALRELFANSGTITSCKVMKD-GSGKSKGFGFVCFTSHDEA 357
Query: 159 KRAIDELCSKDFKGKTIRCSMSE 181
RA+ E+ K KGK + ++++
Sbjct: 358 TRAVTEMNGKMVKGKPLYVALAQ 380
>gi|332858528|ref|XP_003317002.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 1
[Pan troglodytes]
Length = 330
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
+ D +RGF FV + + A +Q + + N L N V KS + A
Sbjct: 130 VACDEHG---SRGFGFVHFETHEAA---QQAINTMNGML-LNDRKVFVGHFKSRREREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +YVKNLP + + L+ELF + G++ V SG R FGF+++ +
Sbjct: 183 LGARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ E+ G++L A+ + ++ E
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 119/270 (44%), Gaps = 15/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L + ++ L DL +G+V V + +D + S G+ +V + + A RA++
Sbjct: 38 TSLYVGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDASRAME 97
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L GK+IR S + L FI N+ KS K G + + +
Sbjct: 98 MLNFTPVNGKSIRVMYSHRDPTLRKSGSANIFIKNLDKSIDNKALHDTFSSFG-NILSCK 156
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D S +G+ FV Y N A + K+ N L + + S
Sbjct: 157 IATDSNGQS--KGYGFVQYDNEESAQGAIDKL---NGMLMNDKQVYVGHFLRKQERESTT 211
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
++ + +YVKNL E+TT +LK++F G +T V GK + FGFI++ A
Sbjct: 212 GMTKFQNVYVKNLSESTTDDELKKVFGEFGNITSAVVMRDADGKSKCFGFINFETAEDAA 271
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA++ + D + V A+ ++ + E
Sbjct: 272 KAVESLNGKKFDDKEWYVGKAQKKSEREQE 301
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 90/366 (24%), Positives = 158/366 (43%), Gaps = 53/366 (14%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +FI L K + L D G + + D + G+SKG+ FV + ++E A+ AID
Sbjct: 126 ANIFIKNLDKSIDNKALHDTFSSFGNILSCKIATDSN-GQSKGYGFVQYDNEESAQGAID 184
Query: 164 ELC------SKDFKGKTIR-------CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
+L + + G +R M++ N +++ N+ +S T+ E +KV + G
Sbjct: 185 KLNGMLMNDKQVYVGHFLRKQERESTTGMTKFQN-VYVKNLSESTTDDELKKVFGEFG-N 242
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAEPKST 269
+ + +++D A +++ F F+ N A+ + + + S N K D V A+ KS
Sbjct: 243 ITSAVVMRD--ADGKSKCFGFI---NFETAEDAAKAVESLNGKKFDDKEWYVGKAQKKSE 297
Query: 270 PDHSAAAASQVKA-----------LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG 318
+ + + A LYVKNL + ++LKELF G +T SG
Sbjct: 298 REQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSG 357
Query: 319 -KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRT--EGVYSCA----- 370
R GF+ ++ A +A+ + I + L VALA+ + +R + +S
Sbjct: 358 ISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLQAQFSQLRPVAM 417
Query: 371 -------AGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGR--GQMPAGM 421
++P G P G F G ++ + AG G QQ ++ G G P
Sbjct: 418 PPSLAPRMPIYPPGAPGIGQQLFYGQGPPAM---IPPQAGFGYQQQLVPGMRPGGAPMPN 474
Query: 422 HMVPMV 427
+P+V
Sbjct: 475 FFMPLV 480
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 76 EDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGL 135
E E + + + KE D+ G +++ L +E L++L G + +
Sbjct: 297 EREQELKSKFEQTAKEAVDKY-----QGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKV 351
Query: 136 VKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181
++D SG S+G FVAF + E A RA+ E+ K K + ++++
Sbjct: 352 MRDP-SGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQ 396
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 131/285 (45%), Gaps = 32/285 (11%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
+ VFI L K + L D G + + D SG+SKG FV F S+E A+ AI
Sbjct: 111 AANVFIKNLDKAIDHKALYDTFSAFGNILSCKVATDA-SGQSKGHGFVQFESEESAQNAI 169
Query: 163 DELC------SKDFKGKTIR-----CSMSETN-NRLFIGNVPKSWTEKEFRKVIEDVGPG 210
D+L + F G +R ++S T N +F+ N+ S TE + ++ + G
Sbjct: 170 DKLNGMLINDKQVFVGPFLRKQDRESALSGTKFNNVFVKNLLDSMTEADLERIFGEYG-A 228
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTP 270
+ + +++D +++GF FV + N A + + + NF DG V A+ KS
Sbjct: 229 ITSAVVMRD--VDGKSKGFGFVNFANVDDAAKAVEALNGKNF--DGKEWYVGKAQKKSER 284
Query: 271 D------HSAAAASQV-----KALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ H V LY+KNL ++ ++L ELF G +T KV+ P
Sbjct: 285 ELELKGQHEQITKETVDKYHGTNLYIKNLDDSVGDEELMELFSEFGTITSCKVMRDP-NG 343
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR 362
R GF+ ++ A +A+ + + G+ L VALA+ + ++R
Sbjct: 344 ISRGSGFVSFSIAEGATRALGEMNGKMVAGKPLYVALAQRKEDRR 388
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 15/268 (5%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+++G L D ++ L DL + +V V + +D + +S G+ +V F + A +AID L
Sbjct: 26 LYVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNAHDAAKAIDVL 85
Query: 166 CSKDFKGKTIRC--SMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
GK IR S+ + + R +FI N+ K+ K G + + ++
Sbjct: 86 NFTPLNGKIIRIMYSIRDPSARKSGAANVFIKNLDKAIDHKALYDTFSAFG-NILSCKVA 144
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
D A +++G FV + + A + K+ N L + + SA +
Sbjct: 145 TD--ASGQSKGHGFVQFESEESAQNAIDKL---NGMLINDKQVFVGPFLRKQDRESALSG 199
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKA 336
++ ++VKNL ++ T L+ +F +G +T V GK + FGF+++A A KA
Sbjct: 200 TKFNNVFVKNLLDSMTEADLERIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVDDAAKA 259
Query: 337 IKDTEKYEIDGQVLEVALARPQTNKRTE 364
++ DG+ V A+ ++ + E
Sbjct: 260 VEALNGKNFDGKEWYVGKAQKKSERELE 287
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
HG+ ++I L +E+L +L G + +++D + G S+G FV+F E A RA
Sbjct: 304 HGTNLYIKNLDDSVGDEELMELFSEFGTITSCKVMRDPN-GISRGSGFVSFSIAEGATRA 362
Query: 162 IDELCSKDFKGKTIRCSMSE 181
+ E+ K GK + ++++
Sbjct: 363 LGEMNGKMVAGKPLYVALAQ 382
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 126/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KG+ +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETHEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LKELF ++G + +SGK + FGF+ +
Sbjct: 183 LGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++ E
Sbjct: 243 DAQKAVDEMNGKELNGRQVYVGRAQKKGERQNE 275
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 127/278 (45%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F + E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + +++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+I ++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SIRVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGRQVYVGRAQKKGERQ 273
Query: 272 HSAAAA-SQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
+ Q+K LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 NELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T +A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L++L G + ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDEKLKELFSKYGPALSIRVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ G+ +
Sbjct: 253 GKELNGRQV 261
>gi|326526505|dbj|BAJ97269.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 114/268 (42%), Gaps = 15/268 (5%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+++G L + L D+ +G V V + +D ++ S G+A+V F S A RA++ L
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEML 103
Query: 166 CSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
GK IR S + +FI N+ KS K G + +
Sbjct: 104 NFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFG---NILSCK 160
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
+ ++G+ FV Y + A + + N L + + + +
Sbjct: 161 VATEMSGESKGYGFVQYEQDESA---QNAINELNGMLLNDKKVYVGPFVRKQERENVFGS 217
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKA 336
+ +YVKNL E+TT LKELF G +T V+ GK R FGF+++ A+ A
Sbjct: 218 PKFNNVYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHA 277
Query: 337 IKDTEKYEIDGQVLEVALARPQTNKRTE 364
++D + D + L V A+ ++ + +
Sbjct: 278 VEDLNGKKFDDKELYVGRAQKKSEREMQ 305
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 124/273 (45%), Gaps = 19/273 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L +E L ++ IG V + + +D + S G+A+V + + A+RA++
Sbjct: 84 TSLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALE 143
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+L K K R S+ + L FI N+ ++ K G + + +
Sbjct: 144 QLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFG-DILSCK 202
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D S+ G+ FV Y A+ + + + +L+ V P+ D A
Sbjct: 203 VATDEHGASK--GYGFVHYVTGESAEAAIKGVNG--MQLNDKVVFVGIHVPRR--DRQAK 256
Query: 276 ---AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
SQ LY+KNLP TTT++L E+F + G +T + GK R FGF++Y
Sbjct: 257 IDEVRSQFTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENHE 316
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA KA+ + G VL VA A+ +T + E
Sbjct: 317 SASKAVDALHDKDYKGNVLYVARAQKRTERDAE 349
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 93/380 (24%), Positives = 155/380 (40%), Gaps = 53/380 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + + L D G++ + D + G SKG+ FV + + E A+ AI +
Sbjct: 174 IFIKNLDETIDNKALHDTFAAFGDILSCKVATD-EHGASKGYGFVHYVTGESAEAAIKGV 232
Query: 166 CSKDFKGKTIRCSM---------------SETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K + + S+ N L+I N+P T +E +V GP
Sbjct: 233 NGMQLNDKVVFVGIHVPRRDRQAKIDEVRSQFTN-LYIKNLPTETTTEELNEVFGKFGP- 290
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTP 270
+ + + D ++RGF FV Y N+ A + + ++K GN V+ A+ ++
Sbjct: 291 ITSAAVQSDEHG--KHRGFGFVNYENHESASKAVDALHDKDYK--GNVLYVARAQKRTER 346
Query: 271 DHSAAAASQVKA-----------LYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSG 318
D A + + LYVKNL + ++L+ F G +T V K
Sbjct: 347 DAELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKDEKGT 406
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR----------PQTNKRTEGVYS 368
+ FGF+ ++ A KA+ + + + L V+LA+ Q ++R++
Sbjct: 407 SKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSLAQRKEVRKQQLEAQMSQRSQMRSQ 466
Query: 369 CAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVL 428
A +G+P A YG+ Y + G G M+Y MPAGM P
Sbjct: 467 QIAA---AGIPGAPYGAPPNPMYFGGAAAYPPHGGRG----MMYPPNGMPAGMPPRPRYA 519
Query: 429 PDGRIGYVLQQPGVQMPLPP 448
P G++ + PG P PP
Sbjct: 520 PPGQMA-PMGMPG-GAPYPP 537
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 90/187 (48%), Gaps = 12/187 (6%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+ N L++G + + TE ++ +GP V +I + +D R+ G+A+V Y N A
Sbjct: 80 SQPNTSLYVGELDPTVTEAMLYEIFSMIGP-VASIRVCRD-AVTRRSLGYAYVNYLNAAD 137
Query: 240 ADYSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
A+ + +++ N+ L N + W S D S Q +++KNL E K L
Sbjct: 138 AERALEQL---NYSLIKNKACRIMW----SQRDPSLRKTGQGN-IFIKNLDETIDNKALH 189
Query: 299 ELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357
+ F G++ + G + +GF+HY SA AIK +++ +V+ V + P
Sbjct: 190 DTFAAFGDILSCKVATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVP 249
Query: 358 QTNKRTE 364
+ +++ +
Sbjct: 250 RRDRQAK 256
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
E++K++ L G +++ L + +E L++ P G + ++KD + G SKGF
Sbjct: 355 EQQKYETTLKY--QGVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKD-EKGTSKGFG 411
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181
FV F S + A +A+ E+ K K + S+++
Sbjct: 412 FVCFSSPDEATKAVAEMNGKMLGSKPLYVSLAQ 444
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 124/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KG+ +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETHEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LKELF ++G + GK + FGF+ +
Sbjct: 183 LGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDGGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ D E++G+ + V A+ + ++ E
Sbjct: 243 DAQKAVDDMNGKELNGRQVYVGRAQKKGERQNE 275
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 126/278 (45%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F + E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + +++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+I ++ D +++GF FV + + A + M +L+G V A+ K
Sbjct: 219 -SIRVMTDDGG--KSKGFGFVSFERHEDAQKAVDDMNGK--ELNGRQVYVGRAQKKGERQ 273
Query: 272 HSAAAA-SQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
+ Q+K LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 NELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 84/212 (39%), Gaps = 40/212 (18%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T +A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L++L G + ++ D D G+SKGF FV+F E A++A+D++
Sbjct: 194 YIKNFGEDMDDEKLKELFSKYGPALSIRVMTD-DGGKSKGFGFVSFERHEDAQKAVDDMN 252
Query: 167 SKDFKGKTIRCSMSETNN------------------------RLFIGNVPKSWTEKEFRK 202
K+ G+ + ++ L++ N+ ++ RK
Sbjct: 253 GKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRK 312
Query: 203 VIEDVGPGVDTIELIKDPQAPSRNRGFAFVLY 234
G TI K R++GF FV +
Sbjct: 313 EFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
>gi|303272375|ref|XP_003055549.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463523|gb|EEH60801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 606
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 124/272 (45%), Gaps = 18/272 (6%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
+ ++ G L +E L +L IG V + + +D + S G+A+V F+ A RAI
Sbjct: 31 ATSLYCGDLDPSCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGNDAARAI 90
Query: 163 DELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTI 214
D L + GK IR S+ + +FI N+ K K G + +
Sbjct: 91 DALNFQVVNGKPIRIMYSQRDPALRKSGVGNIFIKNLDKEIDNKALYDTFAQFG-NIVSA 149
Query: 215 ELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
++ D Q S +G+ FV + A + +K+ N V + P +
Sbjct: 150 KVATDLQGQS--KGYGFVQFDTEEGAQSAIEKVNGMLL----NDKQV-YVGPFQKRNERG 202
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSA 333
+ +YVKNL E+ T ++L+E+F++ G +T VV GK + FGF+ Y + +A
Sbjct: 203 GGPTTFNNVYVKNLHESVTEEKLREVFEKFGALTSVVVMKDAEGKSKGFGFVCYEDAEAA 262
Query: 334 LKAIKDTEKYE-IDGQVLEVALARPQTNKRTE 364
K++++ + Y+ I+ + V A+ ++ + E
Sbjct: 263 GKSVEELDGYDKIEDKAWVVCRAQKKSEREAE 294
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 135/303 (44%), Gaps = 29/303 (9%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K+ + L D G + + D G+SKG+ FV F ++E A+ AI+++
Sbjct: 122 IFIKNLDKEIDNKALYDTFAQFGNIVSAKVATDLQ-GQSKGYGFVQFDTEEGAQSAIEKV 180
Query: 166 CSKDFKGKTI----------RCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
K + R T N +++ N+ +S TE++ R+V E G + ++
Sbjct: 181 NGMLLNDKQVYVGPFQKRNERGGGPTTFNNVYVKNLHESVTEEKLREVFEKFG-ALTSVV 239
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++KD A +++GF FV Y + A S +++ + K++ V A+ KS +
Sbjct: 240 VMKD--AEGKSKGFGFVCYEDAEAAGKSVEELDGYD-KIEDKAWVVCRAQKKSEREAELK 296
Query: 276 AASQVKA-----------LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFG 323
A + LY+KNL + +L+ELF G +T +G R
Sbjct: 297 AKFDAERRERMEKMAGANLYIKNLEDTVDDAKLRELFAEFGTITSCRVMRDTAGASRGSA 356
Query: 324 FIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAA-GVHPSGLPHAG 382
F+ ++ A +A+ + + L VALA+ + ++R A V G+P+ G
Sbjct: 357 FVAFSSADEATRAVTEMNGKMAGQKPLYVALAQRKEDRRLRLQAQFAQRQVAAGGMPNMG 416
Query: 383 -YG 384
YG
Sbjct: 417 PYG 419
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 111/246 (45%), Gaps = 40/246 (16%)
Query: 55 TSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKE-------KHDQLLALPPHGSEVF 107
T + QS G +TE+ + ++ + ++K+ K ++ P + V+
Sbjct: 153 TDLQGQSKGYGFVQFDTEEGAQSAIEKVNGMLLNDKQVYVGPFQKRNERGGGPTTFNNVY 212
Query: 108 IGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCS 167
+ L + +EE LR++ E G + V ++KD + G+SKGF FV + E A ++++EL
Sbjct: 213 VKNLHESVTEEKLREVFEKFGALTSVVVMKDAE-GKSKGFGFVCYEDAEAAGKSVEELDG 271
Query: 168 KD-FKGKT-IRCSMSETNNR-----------------------LFIGNVPKSWTEKEFRK 202
D + K + C + + R L+I N+ + + + R+
Sbjct: 272 YDKIEDKAWVVCRAQKKSEREAELKAKFDAERRERMEKMAGANLYIKNLEDTVDDAKLRE 331
Query: 203 VIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT-V 261
+ + G + + +++D S RG AFV + + AD + + +T N K+ G P V
Sbjct: 332 LFAEFGT-ITSCRVMRDTAGAS--RGSAFVAF---SSADEATRAVTEMNGKMAGQKPLYV 385
Query: 262 SWAEPK 267
+ A+ K
Sbjct: 386 ALAQRK 391
>gi|221061487|ref|XP_002262313.1| polyadenylate-binding protein [Plasmodium knowlesi strain H]
gi|193811463|emb|CAQ42191.1| polyadenylate-binding protein, putative [Plasmodium knowlesi strain
H]
Length = 874
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 121/256 (47%), Gaps = 19/256 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L +D +E L ++ +G V + + +D + +S G+A+V + + A+RA+D
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L + KG+ R S + +F+ N+ KS K G + + +
Sbjct: 76 TLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFG-NILSCK 134
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D S++ G FV Y + A + +K+ +L V +S A
Sbjct: 135 VATDEFGKSKSYG--FVHYEDEESAKEAIEKVNG--IQLGSKNVYVGHFIKRS---ERAT 187
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALK 335
++ LYVKN P++ T LK+LF +GE+T ++ + R F FI+YA+ SA
Sbjct: 188 NDTKFTNLYVKNFPDSVTEAHLKQLFSPYGEITSMIVKT-DNKNRKFCFINYADSESAKN 246
Query: 336 AIKDTEKYEI--DGQV 349
A+++ +I DGQ+
Sbjct: 247 AMENLNGKKITDDGQI 262
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 78/182 (42%), Gaps = 30/182 (16%)
Query: 84 SISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGE 143
+++ + K KH G ++I L ++ L++L EP G + +++D D +
Sbjct: 428 NLNMESKNKH--------QGVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRD-DKEQ 478
Query: 144 SKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRK- 202
SKGF FV F +E A +A+ E+ K GK + ++E + S ++ FR
Sbjct: 479 SKGFGFVCFAQQEEANKAVTEMHLKIINGKPLYVGLAEKREQRL------SRLQQRFRMH 532
Query: 203 -VIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTV 261
+ + +++ +PQ+P L +N +Y R +T N +
Sbjct: 533 PIRHHMNNALNSPMQYPNPQSPQ--------LQFNQNTLNYGRPVLTPFN-----QNNLI 579
Query: 262 SW 263
SW
Sbjct: 580 SW 581
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGKRDFGFIHYAERSSALKAIKDTE 341
LY+KNL + + LKELF+ +G +T V K + FGF+ +A++ A KA+ +
Sbjct: 442 LYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFAQQEEANKAVTEMH 501
Query: 342 KYEIDGQVLEVALA 355
I+G+ L V LA
Sbjct: 502 LKIINGKPLYVGLA 515
>gi|384247365|gb|EIE20852.1| hypothetical protein COCSUDRAFT_4708, partial [Coccomyxa
subellipsoidea C-169]
Length = 264
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 124/269 (46%), Gaps = 29/269 (10%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+++G L +E L+D+ +G V EV +VKD+ +G S G AFV F + A A+ +
Sbjct: 7 LYVGNLHPYVNEAVLQDIFSTLGTVSEVRIVKDRATGNSAGSAFVKFEDHQAAAIALKTI 66
Query: 166 CSKDFKGKTIRCSM---------SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
+ K +R + +++ +F+GN+ + + + +G D +
Sbjct: 67 NGRILYNKEVRIQWAFQKEKTENTASHSHIFVGNLSGDVADPVLLQAFQHLGECSDA-RV 125
Query: 217 IKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS-------- 268
+ D + R++GF FV + A+ + +M A ++ WA K+
Sbjct: 126 MWD-HSTGRSKGFGFVSFRTKEAAEKALAEMDGA--QVGQWKIRCGWAHHKTEAVTGLDI 182
Query: 269 -TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHY 327
T D + A + V YV NLP + L+ F +GE+T + P K G +GF+ Y
Sbjct: 183 DTVDRADPANTNV---YVGNLPTEVMEEDLRAAFGAYGEITG-LKPCHKGG---YGFVTY 235
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ S+A++AI E+ G++++ + R
Sbjct: 236 RDHSAAVQAIVGMNGKELKGKMVKCSWGR 264
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 31/180 (17%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
S +F+G L D ++ L + +GE + ++ D +G SKGF FV+FR+KE A++A+
Sbjct: 94 SHIFVGNLSGDVADPVLLQAFQHLGECSDARVMWDHSTGRSKGFGFVSFRTKEAAEKALA 153
Query: 164 ELCSKDFKGKTIRCSMSE-------------------TNNRLFIGNVPKSWTEKEFRKVI 204
E+ IRC + N +++GN+P E++ R
Sbjct: 154 EMDGAQVGQWKIRCGWAHHKTEAVTGLDIDTVDRADPANTNVYVGNLPTEVMEEDLRAAF 213
Query: 205 EDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSW 263
G I +K P G+ FV Y +++ A Q + N K L G SW
Sbjct: 214 GAYGE----ITGLK----PCHKGGYGFVTYRDHSAA---VQAIVGMNGKELKGKMVKCSW 262
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
P + V++G LP + EEDLR GE+ GL K G G+ FV +R A +
Sbjct: 190 PANTNVYVGNLPTEVMEEDLRAAFGAYGEI--TGL-KPCHKG---GYGFVTYRDHSAAVQ 243
Query: 161 AIDELCSKDFKGKTIRCSM 179
AI + K+ KGK ++CS
Sbjct: 244 AIVGMNGKELKGKMVKCSW 262
>gi|326492626|dbj|BAJ90169.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511122|dbj|BAJ87575.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 114/268 (42%), Gaps = 15/268 (5%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+++G L + L D+ +G V V + +D ++ S G+A+V F S A RA++ L
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEML 103
Query: 166 CSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
GK IR S + +FI N+ KS K G + +
Sbjct: 104 NFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFG---NILSCK 160
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
+ ++G+ FV Y + A + + N L + + + +
Sbjct: 161 VATEMSGESKGYGFVQYEQDESA---QNAINELNGMLLNDKKVYVGPFVRKQERENVFGS 217
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKA 336
+ +YVKNL E+TT LKELF G +T V+ GK R FGF+++ A+ A
Sbjct: 218 PKFNNVYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHA 277
Query: 337 IKDTEKYEIDGQVLEVALARPQTNKRTE 364
++D + D + L V A+ ++ + +
Sbjct: 278 VEDLNGKKFDDKELYVGRAQKKSEREMQ 305
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 125/278 (44%), Gaps = 23/278 (8%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
P+ + +++G L +E L +L IG+V + + +D + S G+A+V + S +R
Sbjct: 53 PNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGER 112
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A++EL KGK R S+ + L FI N+ + K G +
Sbjct: 113 ALEELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFG-NIL 171
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAEPKSTPD 271
+ ++ +D S +G+ FV Y A+ + + S N L+ V PK
Sbjct: 172 SCKVAQDEHGNS--KGYGFVHY---ETAEAANSAIKSVNGMLLNEKKVFVGHHIPKK--- 223
Query: 272 HSAAAASQVKA----LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIH 326
+ ++KA +YVKN+ T + + LF+++G++T + GK R FGF++
Sbjct: 224 DRMSKFEEMKANFTNIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQEGKSRGFGFVN 283
Query: 327 YAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
Y A KA+++ + GQ L V A+ + + E
Sbjct: 284 YIRHEDANKAVEELNNSDFKGQALYVGRAQKKHEREEE 321
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 98/228 (42%), Gaps = 31/228 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + L D G + + +D + G SKG+ FV + + E A AI +
Sbjct: 146 VFIKNLDGAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETAEAANSAIKSV 204
Query: 166 C------SKDFKGKTI----RCS----MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G I R S M +++ N+ T+ EFR + E G +
Sbjct: 205 NGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDPEATDDEFRALFEKYG-DI 263
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ L D + SR GF FV Y + A+ + +++ +++FK G V A+ K +
Sbjct: 264 TSASLAHDQEGKSR--GFGFVNYIRHEDANKAVEELNNSDFK--GQALYVGRAQKKHERE 319
Query: 272 -----------HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT 308
+A Q LYVKNL + +L+++F+ +G +T
Sbjct: 320 EELRKQYEAQRQEKSAKYQGVNLYVKNLADEIDDDELRKIFEPYGAIT 367
>gi|348563863|ref|XP_003467726.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 613
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 123/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
S +++G L D +E L + P+G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 SSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
+ D +RGF FV + N A +Q + + N L N V KS + A
Sbjct: 130 VACDEHG---SRGFGFVHFETNEAA---QQAIGTMNGMLL-NDRKVFVGHFKSQREREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERS 331
A A + +YVKNL + + L++LF G + V SG R FGF+++ +
Sbjct: 183 LGAQALEFTNIYVKNLSVDMDEQGLQDLFFAFGNMLSVKVMRDNSGHSRGFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ E+ GQ L V A+ + ++ E
Sbjct: 243 EAQKAVDHMNGKEVSGQQLYVGRAQKRAERQNE 275
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 120/278 (43%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + L D G + + D+ S+GF FV F + E A++AI +
Sbjct: 101 VFIKNLEDSIDSKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETNEAAQQAIGTM 158
Query: 166 CS------KDFKG--KTIRCSMSETN------NRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ R +E +++ N+ E+ + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSQREREAELGAQALEFTNIYVKNLSVDMDEQGLQDLFFAFG-NM 217
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
++++++D SR GF FV + + A + M ++ G V A+ ++
Sbjct: 218 LSVKVMRDNSGHSR--GFGFVNFEKHEEAQKAVDHMNGK--EVSGQQLYVGRAQKRAERQ 273
Query: 272 HSAAA-ASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
+ Q+K LYVKNL ++ + ++L+ +F +G +T KV+T S
Sbjct: 274 NELKRRFEQLKQDRQTRYRGVNLYVKNLDDSISDEKLRTVFSPYGVITSAKVMTEGDHS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGCIVGTKPLYVALAQ 369
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G +++ L S+E LR + P G + ++ + D SKGF FV F S E A +A+
Sbjct: 293 GVNLYVKNLDDSISDEKLRTVFSPYGVITSAKVMTEGD--HSKGFGFVCFSSPEEATKAV 350
Query: 163 DEL 165
E+
Sbjct: 351 TEM 353
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 118/270 (43%), Gaps = 13/270 (4%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L +E L ++ IG V + + +D + S G+A+V + + +RA++
Sbjct: 56 ASLYVGELDSTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 115
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+L K + R S+ + +FI N+ + K G V + +
Sbjct: 116 QLNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDHKALHDTFAAFG-NVLSCK 174
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D R+RGF FV +Y+ A A + K + D + K H
Sbjct: 175 VATDENG--RSRGFGFV-HYDTAEAADTAIKAVNGMLLNDKKVFVGHYISKKERQAHIDE 231
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
SQ LYVKNL T + ++F + GEVT V + GK + FGF+++ + SA
Sbjct: 232 QKSQFTNLYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKDEEGKSKGFGFVNFKDHESAQ 291
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+ E++G+ L V A+ + + E
Sbjct: 292 AAVDALHDTELNGKKLFVTRAQKKAEREEE 321
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 87/380 (22%), Positives = 151/380 (39%), Gaps = 59/380 (15%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + + L D G V + D++ G S+GF FV + + E A AI +
Sbjct: 146 IFIKNLDEQIDHKALHDTFAAFGNVLSCKVATDEN-GRSRGFGFVHYDTAEAADTAIKAV 204
Query: 166 C------SKDFKGKTI-----RCSMSETNNR---LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G I + + E ++ L++ N+ T+ EF + G V
Sbjct: 205 NGMLLNDKKVFVGHYISKKERQAHIDEQKSQFTNLYVKNLDTEVTDDEFNDMFAKFGE-V 263
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ + KD + +++GF FV + ++ A + + + +L+G V+ A+ K+ +
Sbjct: 264 TSAVVQKDEEG--KSKGFGFVNFKDHESAQAAVDALH--DTELNGKKLFVTRAQKKAERE 319
Query: 272 HSA-----------AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGK 319
+ Q LY+KNL ++ +L+ F+ G +T + K
Sbjct: 320 EELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDDKLRAEFEPFGTITSCKIMRDEKGTS 379
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLP 379
+ FGF+ Y+ A KA+ + + + L V+ A+ + +R + AA
Sbjct: 380 KGFGFVCYSSPEEATKAVAEMNNKMLGSKPLYVSPAQRREVRRQQLESQIAA-------- 431
Query: 380 HAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQ 439
+F + AA AG+ P Y G + G +GY Q
Sbjct: 432 ---RNNFR----------MQQAAAAGI--PNAYLNGPIYYPPGPGGYPQGRGMMGYGGPQ 476
Query: 440 PGVQMPLPPPRPRRVERGPG 459
PG+ PPRPR G G
Sbjct: 477 PGIM----PPRPRYAPNGQG 492
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 80/180 (44%), Gaps = 31/180 (17%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++ L + ++++ D+ GEV + KD++ G+SKGF FV F+ E A+ A+D
Sbjct: 237 TNLYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKDEE-GKSKGFGFVNFKDHESAQAAVD 295
Query: 164 ELCSKDFKGKTIRCSMSETN------------------------NRLFIGNVPKSWTEKE 199
L + GK + + ++ L+I N+ + +
Sbjct: 296 ALHDTELNGKKLFVTRAQKKAEREEELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDDK 355
Query: 200 FRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTP 259
R E G + + ++++D + S +GF FV Y + + + + + N K+ G+ P
Sbjct: 356 LRAEFEPFG-TITSCKIMRDEKGTS--KGFGFVCY---SSPEEATKAVAEMNNKMLGSKP 409
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G+ ++I L D ++ LR EP G + +++D + G SKGF FV + S E A +A
Sbjct: 338 QGANLYIKNLEDDMDDDKLRAEFEPFGTITSCKIMRD-EKGTSKGFGFVCYSSPEEATKA 396
Query: 162 IDELCSKDFKGKTIRCS 178
+ E+ +K K + S
Sbjct: 397 VAEMNNKMLGSKPLYVS 413
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 125/274 (45%), Gaps = 20/274 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 12 ASLYVGDLDPDITEAMLYEKFSPAGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 71
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 72 TMNFDTIKGKPMRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAIYDTFSAFG-NILSCK 130
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ +D S +GF FV + AD + K+ L+G V P+S + AA
Sbjct: 131 VAQDETGSS--KGFGFVHFETQEAADEAMAKVN--GMMLNGKKVYVGRFVPRS--ERLAA 184
Query: 276 ---AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERS 331
A + +YVKN + +L++ F+++G+V G R FGF+ Y E
Sbjct: 185 MGEAQKRFTNIYVKNFGDKWDDDKLRDFFEKYGKVVSAKVMTDDMGHSRGFGFVSYEEPD 244
Query: 332 SALKAIKDTEKYEI-DGQVLEVALARPQTNKRTE 364
SA KA ++ E+ DG+ + V A+ + ++ E
Sbjct: 245 SAGKACEEMNDMEVDDGRRIYVGRAQKKAERQAE 278
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 121/286 (42%), Gaps = 34/286 (11%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + + D G + + +D ++G SKGF FV F ++E A A+ ++
Sbjct: 102 VFIKNLDKSIDNKAIYDTFSAFGNILSCKVAQD-ETGSSKGFGFVHFETQEAADEAMAKV 160
Query: 166 CSKDFKGKTIRC-----------SMSETNNR---LFIGNVPKSWTEKEFRKVIEDVGPGV 211
GK + +M E R +++ N W + + R E G V
Sbjct: 161 NGMMLNGKKVYVGRFVPRSERLAAMGEAQKRFTNIYVKNFGDKWDDDKLRDFFEKYGKVV 220
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ D +RGF FV Y A + ++M DG V A+ K+
Sbjct: 221 SAKVMTDDM---GHSRGFGFVSYEEPDSAGKACEEMNDMEVD-DGRRIYVGRAQKKAERQ 276
Query: 272 HSAAAA-SQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
A ++K LYVKNL + L++ F + G +T KV+T G+S
Sbjct: 277 AELKAKFEKIKQERIQRYQGVNLYVKNLDSTIDEEILRKEFSQFGTITSSKVMTENGRS- 335
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ FGF+ ++ A KA+ + + + L VALA+ + +++ +
Sbjct: 336 -KGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQRKEDRKAQ 380
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 126/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D +RG+ FV + + A + + M N V KS + A
Sbjct: 130 VVCDENG---SRGYGFVHFETHEAATRAIETMNGMLL----NDRKVFVGHFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN ++ +L+E+F R G+ V +G+ + FGF+++ +
Sbjct: 183 VGARAIEFTNVYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMDNNGRSKGFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ D EI+G++L V A+ + +++E
Sbjct: 243 EAQKAVADMNGKEINGRLLYVGRAQKRLERQSE 275
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 121/278 (43%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + L D G + +V D++ S+G+ FV F + E A RAI+ +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG--SRGYGFVHFETHEAATRAIETM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + R++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAEVGARAIEFTNVYIKNFGDDMDDDRLREIFSRFGKTL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWA----EPK 267
+++++ D R++GF FV + + A + M +++G V A E +
Sbjct: 219 -SVKVMMDNNG--RSKGFGFVNFEKHEEAQKAVADMNGK--EINGRLLYVGRAQKRLERQ 273
Query: 268 STPDHSAAAASQVKA-------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
S Q + LYVKNL + ++L++ F +G +T KV+T G+S
Sbjct: 274 SELKRKFEQMKQERVNRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ ++ A + V+I D ++ LR++ G+ V ++ D ++G SKG
Sbjct: 174 KSRKEREAEVGARAIEFTNVYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMD-NNGRSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
F FV F E A++A+ ++ K+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVADMNGKEINGRLL 261
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 126/278 (45%), Gaps = 21/278 (7%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P + +++G L +E L +L IG V + + +D + S G+A+V + S + +
Sbjct: 60 PQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTQDGE 119
Query: 160 RAIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGV 211
+A++EL KG+ R S+ + L FI N+ + K G +
Sbjct: 120 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 178
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ ++ +D S +G+ FV Y + A + + + L+ V + PK
Sbjct: 179 LSCKVAQDENGNS--KGYGFVHYETDEAAAQAIKHVNG--MLLNEKKVYVGYHIPKK--- 231
Query: 272 HSAAAASQVKA----LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIH 326
+ ++KA +YVKN+ T ++ +ELF ++GEVT GK R FGF++
Sbjct: 232 DRQSKFEEMKANFTNVYVKNINHEVTEEEFRELFAKYGEVTSSSLARDNEGKSRGFGFVN 291
Query: 327 YAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ +SA KA+++ E GQ L V A+ + + E
Sbjct: 292 FTTHASAAKAVEELNGKEFRGQELYVGRAQKKHEREEE 329
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 93/417 (22%), Positives = 155/417 (37%), Gaps = 113/417 (27%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + L D G + + +D ++G SKG+ FV + + E A +AI +
Sbjct: 154 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHV 212
Query: 166 CSKDFKGKTIRCS--------------MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
K + M +++ N+ TE+EFR++ G V
Sbjct: 213 NGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNINHEVTEEEFRELFAKYGE-V 271
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ L +D + ++RGF FV + +A A + +++ F+ G V A+ K +
Sbjct: 272 TSSSLARDNEG--KSRGFGFVNFTTHASAAKAVEELNGKEFR--GQELYVGRAQKKHERE 327
Query: 272 H----SAAAASQVKA-------LYVKNLPENTTTKQLKELFQRHGEVT--KVVT------ 312
S AA KA LY+KNL ++ +L+++F G +T KV+
Sbjct: 328 EELRKSYEAARLEKANKYQGVNLYIKNLADDVDDDKLRQMFSEFGPITSAKVMRDAPPEP 387
Query: 313 PPGKSGKRD------------------------------------FGFIHYAERSSALKA 336
P G G ++ FGF+ ++ A KA
Sbjct: 388 PAGSEGDKEGKDKENKKESEKEGEGEAAEKKTEKKVERKLGKSKGFGFVCFSNPDDATKA 447
Query: 337 IKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAA--------GVHPSGLPHAGYGSFAG 388
+ + + +DG+ L VALA+ + ++++ S A +GLP
Sbjct: 448 VAEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQARNQLRMQQAAAQAGLPQ-------- 499
Query: 389 TAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMP 445
+Q P+ Y GQ P LP G G Q G+ MP
Sbjct: 500 ---------------QYMQAPVYYAPGQQPG-------FLPPGGRGMPFPQGGIGMP 534
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 119/268 (44%), Gaps = 15/268 (5%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+++G L ++ L +L G+V V + +D S S G+A+V F + A RA++ L
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 166 CSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
GK IR S + +FI N+ K+ K G + + ++
Sbjct: 101 NFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFG-NILSCKVA 159
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
D S +GF FV Y A + + S N L + P + ++
Sbjct: 160 TDEMGQS--KGFGFVQYDKGEAA---QSAIKSLNGMLINDKPVYVGPFLRKQERENSVDK 214
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKA 336
++ ++VKNL E+TT + L ++F +G +T V G GK R FGFI++ A +A
Sbjct: 215 TKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARA 274
Query: 337 IKDTEKYEIDGQVLEVALARPQTNKRTE 364
+++ +I+ + V A+ ++ + E
Sbjct: 275 VEELNGKKINDKEWYVGRAQKKSEREIE 302
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 156/377 (41%), Gaps = 48/377 (12%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +FI L K + L D G + + D + G+SKGF FV + E A+ AI
Sbjct: 127 ANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATD-EMGQSKGFGFVQYDKGEAAQSAIK 185
Query: 164 ELCSKDFKGKTIRC-----------SMSETN-NRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
L K + S+ +T N +F+ N+ +S T+++ K+ G
Sbjct: 186 SLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNIT 245
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ ++ ++R F F+ + + A + +++ K++ V A+ KS +
Sbjct: 246 SAVIMVG---MDGKSRCFGFINFKSPDDAARAVEELNGK--KINDKEWYVGRAQKKSERE 300
Query: 272 -----------HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-K 319
AA Q LY+KNL ++ QL ELF +G++T +G
Sbjct: 301 IELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVS 360
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRT--EGVYSCAAGV--HP 375
+ GF+ ++ R A +A+ + I G+ L VA A+ + +++ + +S V P
Sbjct: 361 KGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQVRPVPMTP 420
Query: 376 SGLPH---------AGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPM 426
S P G F G A ++ + G G QQ ++ G P G HM
Sbjct: 421 SMAPRLPMYPPMAPLGQQLFYGQAPPAI---MPPQPGFGFQQQLV--PGMRPGGAHMPNY 475
Query: 427 VLPDGRIGYVLQQPGVQ 443
+P + G +PG++
Sbjct: 476 FVPVVQQGQQGPRPGIR 492
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 65 NGSHINTEDAVEDEDKRTASISEDEKEKHDQLL---ALPPHGSEVFIGGLPKDASEEDLR 121
NG IN ++ ++ + + K + +Q + A G +++ L ++ L
Sbjct: 279 NGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLC 338
Query: 122 DLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181
+L G++ +++D + G SKG FVAF ++E A +A+ E+ K GK + + ++
Sbjct: 339 ELFSNYGKITSCKIMRDAN-GVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQ 397
>gi|384486188|gb|EIE78368.1| hypothetical protein RO3G_03072 [Rhizopus delemar RA 99-880]
Length = 499
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 120/274 (43%), Gaps = 14/274 (5%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P + +++G L +E L ++ IG V + + +D + S G+A+V F A+
Sbjct: 24 PLASASLYVGELDPSVTEAMLFEMFNIIGPVSSIRVCRDAVTRRSLGYAYVNFHRMADAE 83
Query: 160 RAIDELCSKDFKGKTIRCSMSE--------TNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
RA++ L KG++ R S+ N +FI N+ S K G +
Sbjct: 84 RALETLNYSMIKGRSCRIMWSQRDPSLRKGNNGNIFIKNLDPSIDHKALHDTFSAFG-NI 142
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ ++ D Q S+ GF ++Y A S K + D K
Sbjct: 143 LSCKIAHDEQGNSKGYGF---VHYETLEAAESAIKSVNGMLLNDRKVFVGHHISRKERES 199
Query: 272 HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGKRDFGFIHYAER 330
+ Q +YVKN+P + T ++L +LF ++G +T V+T + FGF+++ +
Sbjct: 200 KLGESRVQFTNIYVKNIPFDVTDEELSQLFGKYGTITSCVITRDDDGTSKGFGFVNFEKH 259
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A A+ D K + GQ L V+ A+ + N+R E
Sbjct: 260 QDAQNAVDDLHKKDFRGQDLYVSRAQ-KKNEREE 292
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 90 KEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAF 149
KE+ +L + +++ +P D ++E+L L G + + +D D G SKGF F
Sbjct: 195 KERESKLGESRVQFTNIYVKNIPFDVTDEELSQLFGKYGTITSCVITRD-DDGTSKGFGF 253
Query: 150 VAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNN 184
V F + A+ A+D+L KDF+G+ + S ++ N
Sbjct: 254 VNFEKHQDAQNAVDDLHKKDFRGQDLYVSRAQKKN 288
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 120/286 (41%), Gaps = 33/286 (11%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + + D + G SKG+ FV + + E A+ AI +
Sbjct: 118 IFIKNLDPSIDHKALHDTFSAFGNILSCKIAHD-EQGNSKGYGFVHYETLEAAESAIKSV 176
Query: 166 C------SKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G I E+ +++ N+P T++E ++ G +
Sbjct: 177 NGMLLNDRKVFVGHHISRKERESKLGESRVQFTNIYVKNIPFDVTDEELSQLFGKYG-TI 235
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ + +D S+ GF FV + + A + + +F+ G VS A+ K+ +
Sbjct: 236 TSCVITRDDDGTSK--GFGFVNFEKHQDAQNAVDDLHKKDFR--GQDLYVSRAQKKNERE 291
Query: 272 HSA-----------AAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
+ Q LYVKNL ++ +L++ F +G +T K++ +
Sbjct: 292 EELRRQYEEAKLEKMSKYQGVNLYVKNLDDDMDDDRLRDEFSVYGVITSAKIMRDEKTNI 351
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
R FGF+ + A +A+ + I + + VA+A+ + +R++
Sbjct: 352 SRGFGFVCFTSPEDATRAVTEMNGRIIGSKPIYVAIAQRKEVRRSQ 397
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 124/272 (45%), Gaps = 19/272 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L + ++ L D +G V V + +D + S G+ +V F + + A RAI
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
EL GK IR S + +FI N+ +S K G + + +
Sbjct: 96 ELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFG-NIVSCK 154
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSA--NFKLDGNTPTVSWAEPKSTPDHS 273
+ D + +++G+ FV Y N A + +K+ N K P + E ST
Sbjct: 155 VAVD--SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDST---- 208
Query: 274 AAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGKRDFGFIHYAERSS 332
A ++ +YVKNL E+TT LK F +G++T VV G+ + FGF+++
Sbjct: 209 -ANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADD 267
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A +A++ ++ D + V A+ ++ + TE
Sbjct: 268 AARAVESLNGHKFDDKEWYVGRAQKKSERETE 299
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 94/364 (25%), Positives = 160/364 (43%), Gaps = 53/364 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + + L D G + + D SG+SKG+ FV + ++E A++AI++L
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKL 184
Query: 166 CSKDFKGKTI-------RCSMSETNNR-----LFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
K + R T N+ +++ N+ +S T+ + + + G + +
Sbjct: 185 NGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK-ITS 243
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAEPKSTPD- 271
++KD + +++GF FV + N AD + + + S N K D V A+ KS +
Sbjct: 244 AVVMKDGEG--KSKGFGFVNFEN---ADDAARAVESLNGHKFDDKEWYVGRAQKKSERET 298
Query: 272 ----------HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGK 319
AA Q LYVKNL + + ++LKE+F G VT KV+ P + K
Sbjct: 299 ELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSK 358
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRT--EGVYSCA------- 370
GF+ +A A +A+ I+ + L VA+A+ + ++R + +S
Sbjct: 359 GS-GFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQP 417
Query: 371 -----AGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGR--GQMPAGMHM 423
V+P G P G F G A ++ + G G QQ ++ G G P
Sbjct: 418 SVGPRMPVYPPGGPGIGQQMFYGQAPPAM---IPPQPGYGYQQQLVPGMRPGGGPVPSFF 474
Query: 424 VPMV 427
+PMV
Sbjct: 475 MPMV 478
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 76 EDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGL 135
E E + ++ KE D+ S +++ L S+E L+++ P G V +
Sbjct: 295 ERETELRVRYEQNLKEAADKF-----QSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKV 349
Query: 136 VKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181
++D + G SKG FVAF + E A A+ +L K + K + ++++
Sbjct: 350 MRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQ 394
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 5/121 (4%)
Query: 250 ANFKLDGNTPTVSWAEPKSTPDHSA-AAASQV--KALYVKNLPENTTTKQLKELFQRHGE 306
A +L G TP S A S P S A A+Q +LYV +L N T QL + F + G
Sbjct: 2 AQVQLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGT 61
Query: 307 VTKVVTPPGKSGKRD--FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
V V +R +G++++ A +AI++ + G+ + V + + R
Sbjct: 62 VVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRS 121
Query: 365 G 365
G
Sbjct: 122 G 122
>gi|255940906|ref|XP_002561222.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585845|emb|CAP93573.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 734
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 117/273 (42%), Gaps = 13/273 (4%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 42 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 101
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KGK R S+ + L FI N+ + K G +
Sbjct: 102 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFG-NIL 160
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D A S+ GF ++Y A A + K + D K
Sbjct: 161 SCKVAQDEFANSKGYGF---VHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 217
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
+ +Y+KN+ T + + +F+ GE+T + GK R FGF++YA
Sbjct: 218 FEEMKANFTNIYIKNIDLEITDDEFRTMFEAFGEITSATLSHDQDGKSRGFGFVNYANHE 277
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA A+ + + E+ Q L V A+ + + E
Sbjct: 278 SAEAAVAEMNEKEVKSQKLYVGRAQKKHEREEE 310
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 128/291 (43%), Gaps = 45/291 (15%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + ++I + + ++++ R + E GE+ L D+D G+S+GF
Sbjct: 211 KKDRQSKFEEMKANFTNIYIKNIDLEITDDEFRTMFEAFGEITSATLSHDQD-GKSRGFG 269
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIEDV 207
FV + + E A+ A+ E+ K+ K + +L++G K E+E RK E
Sbjct: 270 FVNYANHESAEAAVAEMNEKEVKSQ-----------KLYVGRAQKKHEREEELRKQYEAA 318
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKM----------TSANFKLDG- 256
+ S+ +G LY N D +K+ TSA D
Sbjct: 319 -----------RMEKASKYQGVN--LYVKNLTDDIDDEKLRDLFTPYGTITSAKVMRDAA 365
Query: 257 -NTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPG 315
+PT E ++ + + +VK + K+ +E GE T+
Sbjct: 366 ERSPTPEAEEKEAAKETKDSEEKEVKTEETAEVKTEAAEKKTEE-----GEATEEKKTEK 420
Query: 316 KS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
K+ GK + FGF+ ++ A KA+ + + ++G+ L VALA+ + +R++
Sbjct: 421 KAFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 471
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 126/274 (45%), Gaps = 21/274 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ ++IG L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRRSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRH-GEVTKVVTPPGKSGK-RDFGFIHYAER 330
A A + +Y+KN ++ ++L+E F+++ G+ V + GK + FGF+ +
Sbjct: 183 FGAKAREFTNVYIKNFGDDMDDERLREYFEQYVGKTLSVKVMMDEGGKSKGFGFVSFERH 242
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 EDAQKAVDEMNTKELNGRAIYVGRAQKKAERQTE 276
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 120/279 (43%), Gaps = 37/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A +AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAADKAIEKM 158
Query: 166 CSK----------DFKGKTIR-----CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
FK + R E N ++I N ++ R+ E
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAEFGAKAREFTN-VYIKNFGDDMDDERLREYFEQYVGK 217
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS-- 268
+++++ D +++GF FV + + A + +M + +L+G V A+ K+
Sbjct: 218 TLSVKVMMDEGG--KSKGFGFVSFERHEDAQKAVDEMNTK--ELNGRAIYVGRAQKKAER 273
Query: 269 ---------TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q LYVKNL +N ++L + F G +T KV+ G+S
Sbjct: 274 QTELKRKFEMLKQERMSKYQGVNLYVKNLDDNINDERLWKEFSPFGTITSAKVMMEEGRS 333
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
R FGF+ ++ A KA+ + I + L VALA+
Sbjct: 334 --RGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 370
>gi|398404546|ref|XP_003853739.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
gi|339473622|gb|EGP88715.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
Length = 763
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 127/274 (46%), Gaps = 24/274 (8%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+++G L +E L +L IG+V + + +D + S G+A+V + +RA++EL
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNVAGDGERALEEL 114
Query: 166 CSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
KG+ R S+ + L FI N+ + K G + + ++
Sbjct: 115 NYTLIKGRPCRIMWSQRDPLLRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NILSCKVA 173
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAEPKSTPDHSAAA 276
+D A S +G+ FV Y A+ + Q + + N L+ V PK +
Sbjct: 174 QDENANS--KGYGFVHY---ETAEAANQAIKNVNGMLLNEKKVFVGHHIPKK---DRMSK 225
Query: 277 ASQVKA----LYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGK-RDFGFIHYAER 330
++KA +YVKN+ TT + +ELF+++G++T + +SGK R FGF++Y
Sbjct: 226 VEEMKANFTNIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGFVNYIRH 285
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ + GQ L V A+ + + E
Sbjct: 286 EDAYKAVEELNDSDFKGQKLYVGRAQKKHEREEE 319
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 85/350 (24%), Positives = 145/350 (41%), Gaps = 83/350 (23%)
Query: 92 KHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVA 151
+ D LL G+ VFI L + L D G + + +D+++ SKG+ FV
Sbjct: 130 QRDPLLRKTGQGN-VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDENAN-SKGYGFVH 187
Query: 152 FRSKEVAKRAIDELC------SKDFKGKTI----RCS----MSETNNRLFIGNVPKSWTE 197
+ + E A +AI + K F G I R S M +++ N+ T+
Sbjct: 188 YETAEAANQAIKNVNGMLLNEKKVFVGHHIPKKDRMSKVEEMKANFTNIYVKNIDSETTD 247
Query: 198 KEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGN 257
EFR++ E G + + L D ++ +NRGF FV Y + A + +++ ++FK G
Sbjct: 248 NEFRELFEKYG-DITSASLAHDNES-GKNRGFGFVNYIRHEDAYKAVEELNDSDFK--GQ 303
Query: 258 TPTVSWAEPKSTPDHSA----AAASQVKA-------LYVKNLPENTTTKQLKELFQRHGE 306
V A+ K + AA Q K+ LYVKNL + +L+++F+ +G
Sbjct: 304 KLYVGRAQKKHEREEELRKQYEAARQEKSAKYTGVNLYVKNLADEIDDDELRKVFEPYGA 363
Query: 307 VT--KVV----------TPPGKSG--------------KRD------------------- 321
+T KV+ TP K G K+D
Sbjct: 364 ITSAKVMRDTLPADGSETPAKKEGDAEEKEAEPEKDGEKKDDVDDLSKKLDTVTIQGEKK 423
Query: 322 -------FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
FGF+ ++ A KA+ + + + G+ L VALA+ + ++++
Sbjct: 424 LLGKSKGFGFVCFSNPDEATKAVTELNQKMVHGKPLYVALAQRKEVRKSQ 473
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 81/180 (45%), Gaps = 25/180 (13%)
Query: 64 ANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDL 123
AN + N + +E K +K++ ++ + + + +++ + + ++ + R+L
Sbjct: 194 ANQAIKNVNGMLLNEKKVFVGHHIPKKDRMSKVEEMKANFTNIYVKNIDSETTDNEFREL 253
Query: 124 CEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE-- 181
E G++ L D +SG+++GF FV + E A +A++EL DFKG+ + ++
Sbjct: 254 FEKYGDITSASLAHDNESGKNRGFGFVNYIRHEDAYKAVEELNDSDFKGQKLYVGRAQKK 313
Query: 182 ----------------------TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKD 219
T L++ N+ + E RKV E G + + ++++D
Sbjct: 314 HEREEELRKQYEAARQEKSAKYTGVNLYVKNLADEIDDDELRKVFEPYG-AITSAKVMRD 372
>gi|156103277|ref|XP_001617331.1| polyadenylate-binding protein [Plasmodium vivax Sal-1]
gi|148806205|gb|EDL47604.1| polyadenylate-binding protein, putative [Plasmodium vivax]
Length = 883
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 120/256 (46%), Gaps = 19/256 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L +D +E L ++ +G V + + +D + +S G+A+V + + A+RA+D
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L + KG+ R S + +F+ N+ KS K G + + +
Sbjct: 76 TLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFG-NILSCK 134
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D S++ G FV Y + A + +K+ +L V KS A
Sbjct: 135 VATDEFGKSKSYG--FVHYEDEESAKEAIEKVNG--IQLGSKNVYVGHFIKKS---ERAT 187
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALK 335
++ LYVKN P++ T LK+LF GE+T ++ + R F FI+YA+ SA
Sbjct: 188 NDTKFTNLYVKNFPDSVTEAHLKQLFSPFGEITSMIVKT-DNKNRKFCFINYADSESAKN 246
Query: 336 AIKDTEKYEI--DGQV 349
A+++ +I DGQ+
Sbjct: 247 AMENLNGKKITDDGQI 262
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 30/182 (16%)
Query: 84 SISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGE 143
+++ + K KH G ++I L ++ L++L EP G + +++D D +
Sbjct: 437 NLNMESKNKH--------QGVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRD-DKEQ 487
Query: 144 SKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRK- 202
SKGF FV F +E A RA+ E+ K GK + ++E + S ++ FR
Sbjct: 488 SKGFGFVCFALQEEANRAVTEMHLKIINGKPLYVGLAEKREQRL------SRLQQRFRMH 541
Query: 203 -VIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTV 261
+ + +++ +PQ+P L +N +Y R +T N +
Sbjct: 542 PIRHHMNNALNSPMQYPNPQSPQ--------LQFNQNTLNYGRPVITPFN-----QNNLI 588
Query: 262 SW 263
SW
Sbjct: 589 SW 590
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 283 LYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGKRDFGFIHYAERSSALKAIKDTE 341
LY+KNL + + LKELF+ +G +T V K + FGF+ +A + A +A+ +
Sbjct: 451 LYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANRAVTEMH 510
Query: 342 KYEIDGQVLEVALA 355
I+G+ L V LA
Sbjct: 511 LKIINGKPLYVGLA 524
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 124/272 (45%), Gaps = 19/272 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L + ++ L D +G V V + +D + S G+ +V F + + A RAI
Sbjct: 20 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 79
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
EL GK IR S + +FI N+ +S K G + + +
Sbjct: 80 ELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFG-NIVSCK 138
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSA--NFKLDGNTPTVSWAEPKSTPDHS 273
+ D + +++G+ FV Y N A + +K+ N K P + E ST
Sbjct: 139 VAVD--SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDST---- 192
Query: 274 AAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGKRDFGFIHYAERSS 332
A ++ +YVKNL E+TT LK F +G++T VV G+ + FGF+++
Sbjct: 193 -ANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADD 251
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A +A++ ++ D + V A+ ++ + TE
Sbjct: 252 AARAVESLNGHKFDDKEWYVGRAQKKSERETE 283
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 94/364 (25%), Positives = 160/364 (43%), Gaps = 53/364 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + + L D G + + D SG+SKG+ FV + ++E A++AI++L
Sbjct: 110 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKL 168
Query: 166 CSKDFKGKTI-------RCSMSETNNR-----LFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
K + R T N+ +++ N+ +S T+ + + + G + +
Sbjct: 169 NGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK-ITS 227
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAEPKSTPD- 271
++KD + +++GF FV + N AD + + + S N K D V A+ KS +
Sbjct: 228 AVVMKDGEG--KSKGFGFVNFEN---ADDAARAVESLNGHKFDDKEWYVGRAQKKSERET 282
Query: 272 ----------HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGK 319
AA Q LYVKNL + + ++LKE+F G VT KV+ P + K
Sbjct: 283 ELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSK 342
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRT--EGVYSCA------- 370
GF+ +A A +A+ I+ + L VA+A+ + ++R + +S
Sbjct: 343 GS-GFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQP 401
Query: 371 -----AGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGR--GQMPAGMHM 423
V+P G P G F G A ++ + G G QQ ++ G G P
Sbjct: 402 SVGPRMPVYPPGGPGIGQQMFYGQAPPAM---IPPQPGYGYQQQLVPGMRPGGGPVPSFF 458
Query: 424 VPMV 427
+PMV
Sbjct: 459 MPMV 462
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 76 EDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGL 135
E E + ++ KE D+ S +++ L S+E L+++ P G V +
Sbjct: 279 ERETELRVRYEQNLKEAADKF-----QSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKV 333
Query: 136 VKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181
++D + G SKG FVAF + E A A+ +L K + K + ++++
Sbjct: 334 MRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQ 378
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 119/268 (44%), Gaps = 15/268 (5%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+++G L ++ L +L G+V V + +D S S G+A+V F + A RA++ L
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 166 CSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
GK IR S + +FI N+ K+ K G + + ++
Sbjct: 101 NFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFG-NILSCKVA 159
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
D S +GF FV Y A + + S N L + P + ++
Sbjct: 160 TDEMGQS--KGFGFVQYDKGEAA---QSAIKSLNGMLINDKPVYVGPFLRKQERENSVDK 214
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKA 336
++ ++VKNL E+TT + L ++F +G +T V G GK R FGFI++ A +A
Sbjct: 215 TKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARA 274
Query: 337 IKDTEKYEIDGQVLEVALARPQTNKRTE 364
+++ +I+ + V A+ ++ + E
Sbjct: 275 VEELNGKKINDKEWYVGRAQKKSEREIE 302
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 156/377 (41%), Gaps = 48/377 (12%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +FI L K + L D G + + D + G+SKGF FV + E A+ AI
Sbjct: 127 ANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATD-EMGQSKGFGFVQYDKGEAAQSAIK 185
Query: 164 ELCSKDFKGKTIRC-----------SMSETN-NRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
L K + S+ +T N +F+ N+ +S T+++ K+ G
Sbjct: 186 SLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNIT 245
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ ++ ++R F F+ + + A + +++ K++ V A+ KS +
Sbjct: 246 SAVIMVG---MDGKSRCFGFINFKSPDDAARAVEELNGK--KINDKEWYVGRAQKKSERE 300
Query: 272 -----------HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-K 319
AA Q LY+KNL ++ QL ELF +G++T +G
Sbjct: 301 IELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVS 360
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRT--EGVYSCAAGV--HP 375
+ GF+ ++ R A +A+ + I G+ L VA A+ + +++ + +S V P
Sbjct: 361 KGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKVMLQAQFSQVRPVPMTP 420
Query: 376 SGLPH---------AGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPM 426
S P G F G A ++ + G G QQ ++ G P G HM
Sbjct: 421 SMAPRLPMYPPMAPLGQQLFYGQAPPAI---MPPQPGFGFQQQLV--PGMRPGGAHMPNY 475
Query: 427 VLPDGRIGYVLQQPGVQ 443
+P + G +PG++
Sbjct: 476 FVPVVQQGQQGPRPGIR 492
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 65 NGSHINTEDAVEDEDKRTASISEDEKEKHDQLL---ALPPHGSEVFIGGLPKDASEEDLR 121
NG IN ++ ++ + + K + +Q + A G +++ L ++ L
Sbjct: 279 NGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLC 338
Query: 122 DLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181
+L G++ +++D + G SKG FVAF ++E A +A+ E+ K GK + + ++
Sbjct: 339 ELFSNYGKITSCKIMRDAN-GVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQ 397
>gi|395856757|ref|XP_003800785.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Otolemur garnettii]
Length = 359
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 118/265 (44%), Gaps = 33/265 (12%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E+ L +G V + + +D + S G+A+V F A++A+D
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 164 ELCSKDFKGKTIRCSMSETNNRLF---IGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDP 220
+ GK+IR S+ + L IGNV + D
Sbjct: 70 TMNFDVVNGKSIRLMWSQRDAYLRRSGIGNV-------------------------MSDD 104
Query: 221 QAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
Q +G+AFV + N + AD + ++M K D + K A +
Sbjct: 105 QGS---KGYAFVHFQNQSAADRAIEEMNGRQLK-DCKVFVGRFKNRKDREAELRNKAGEF 160
Query: 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKD 339
+Y+KN E+ ++LKE+F ++G V SGK + FGF+ + +A KA+K+
Sbjct: 161 TNVYIKNFGEDMDDEKLKEVFSKYGRTLSVKVMTDSSGKSKGFGFVSFDNHEAAKKAVKE 220
Query: 340 TEKYEIDGQVLEVALARPQTNKRTE 364
+I+GQ++ V A+ + ++ E
Sbjct: 221 MNGKDINGQLIFVGRAQKKVERQAE 245
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 115/257 (44%), Gaps = 35/257 (13%)
Query: 133 VGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL-------CSKDFKGKT---------IR 176
+G V D G SKG+AFV F+++ A RAI+E+ C K F G+ +R
Sbjct: 97 IGNVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGRQLKDC-KVFVGRFKNRKDREAELR 154
Query: 177 CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYN 236
E N ++I N + +++ ++V G + +++++ D S+ GF FV + N
Sbjct: 155 NKAGEFTN-VYIKNFGEDMDDEKLKEVFSKYGRTL-SVKVMTDSSGKSK--GFGFVSFDN 210
Query: 237 NACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA-SQVKA----------LYV 285
+ A + ++M + ++G V A+ K Q+K LY+
Sbjct: 211 HEAAKKAVKEMNGKD--INGQLIFVGRAQKKVERQAELKQMFEQLKKERIHGCQGVKLYI 268
Query: 286 KNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEI 345
KNL + ++L++ F G +++V + FG I ++ A KA+ + + +
Sbjct: 269 KNLDDTIDDEKLRKEFSSFGSISRVKVMQEGGQSKGFGLICFSSLEEATKAMTEMNGHIL 328
Query: 346 DGQVLEVALARPQTNKR 362
+ L +ALA +R
Sbjct: 329 GSKPLSIALAHRHYXER 345
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 32/180 (17%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ V+I +D +E L+++ G V ++ D SG+SKGF FV+F + E AK+A+
Sbjct: 161 TNVYIKNFGEDMDDEKLKEVFSKYGRTLSVKVMTD-SSGKSKGFGFVSFDNHEAAKKAVK 219
Query: 164 ELCSKDFKGKTIRCSMSETN------------------------NRLFIGNVPKSWTEKE 199
E+ KD G+ I ++ +L+I N+ + +++
Sbjct: 220 EMNGKDINGQLIFVGRAQKKVERQAELKQMFEQLKKERIHGCQGVKLYIKNLDDTIDDEK 279
Query: 200 FRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTP 259
RK G +I +K Q +++GF + + + + + + MT N + G+ P
Sbjct: 280 LRKEFSSFG----SISRVKVMQEGGQSKGFGLICF---SSLEEATKAMTEMNGHILGSKP 332
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 121/270 (44%), Gaps = 14/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D +RGF FV + + A + M D + + A
Sbjct: 130 VVCDEHG---SRGFGFVHFETHEAAQNAISTMNGMLLN-DRKVFVGHFKSRREREVELGA 185
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERSSAL 334
A + +YVKNL + ++L++LF + G++ V SG R FGF+++ + A
Sbjct: 186 RAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQ 245
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + E+ G++L V A+ + ++ E
Sbjct: 246 KAVVNMNGREVSGRLLYVGRAQKRVERQNE 275
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 119/280 (42%), Gaps = 40/280 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + +V D+ S+GF FV F + E A+ AI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQNAISTM 158
Query: 166 CSK----------DFKGKTIR------CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
FK + R +M TN +++ N+ E+ + + G
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREVELGARAMEFTN--IYVKNLHVDVDEQRLQDLFSQFGK 216
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK-S 268
+ ++++++D SR GF FV + + A + M ++ G V A+ +
Sbjct: 217 ML-SVKVMRDDSGHSR--GFGFVNFEKHEEAQKAVVNMNGR--EVSGRLLYVGRAQKRVE 271
Query: 269 TPDHSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGK 316
+ Q+K LYVKNL ++ ++L++ F +G +T KV+T G
Sbjct: 272 RQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGH 331
Query: 317 SGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 332 S--KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
>gi|357145576|ref|XP_003573691.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 663
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 118/271 (43%), Gaps = 17/271 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L + L D+ +G V V + +D ++ S G+A+V F S A RA++
Sbjct: 42 TSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARAME 101
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L GK IR S + +FI N+ KS K G TI
Sbjct: 102 MLNFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALFDTFSAFG----TIL 157
Query: 216 LIK-DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
K + ++G+ FV Y + A + + N L + + +
Sbjct: 158 SCKVATEISGESKGYGFVQYEQDESA---QNAINELNGMLLNDKKVYVGPFVRKQERENV 214
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSA 333
+ + +YVKNL E+TT LKE+F + G +T V+ GK R FGF+++ A
Sbjct: 215 FGSPKFNNVYVKNLSESTTEDNLKEMFGKFGPITSVIVVRADDGKSRCFGFVNFENPDDA 274
Query: 334 LKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A++D ++D + L V A+ ++ + +
Sbjct: 275 ARAVEDLNGKKLDDKELYVGRAQKKSEREMQ 305
>gi|148223119|ref|NP_001088471.1| uncharacterized protein LOC495336 [Xenopus laevis]
gi|54311231|gb|AAH84798.1| LOC495336 protein [Xenopus laevis]
Length = 711
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 131/286 (45%), Gaps = 35/286 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K +++L D G + + D ++G SKG+ FV F ++E AKRAI ++
Sbjct: 92 IFIKNLAKTIEQKELYDTFSLFGRILSCKIAMD-ENGNSKGYGFVHFENEECAKRAIQKV 150
Query: 166 CSKDFKGKTI-------RCSMSETN-----NRLFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
+ GK + R N N +++ N P +++ +++ + G + +
Sbjct: 151 NNMSICGKVVYVGNFIPRSDRKSQNRKQKFNNIYVKNFPPETDDEKLKEMFTEFGE-IKS 209
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAE-------- 265
++KD + S +GF FV Y N A+ + M ++ G + S A+
Sbjct: 210 ACVMKDSEGKS--KGFGFVCYLNPEHAEAAVAAMHGK--EIGGRSLYASRAQRKEERQEE 265
Query: 266 -----PKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
K + + S V LYVKNL + ++LKE+F ++G ++ KV+T
Sbjct: 266 LKLRLEKQKAERRSKYVSNVN-LYVKNLDDEIDDERLKEIFSKYGPISSAKVMTDSNNRS 324
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
K FGF+ + A KA+ + + L VA+A+ + ++R E
Sbjct: 325 K-GFGFVCFTNPEQATKAVTEANGRVEYSKPLYVAIAQRKEDRRAE 369
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 88/181 (48%), Gaps = 32/181 (17%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++ P + +E L+++ GE+ ++KD + G+SKGF FV + + E A+ A+
Sbjct: 181 NNIYVKNFPPETDDEKLKEMFTEFGEIKSACVMKDSE-GKSKGFGFVCYLNPEHAEAAVA 239
Query: 164 ELCSKDFKGKTIRCSMSE-------------------------TNNRLFIGNVPKSWTEK 198
+ K+ G+++ S ++ +N L++ N+ ++
Sbjct: 240 AMHGKEIGGRSLYASRAQRKEERQEELKLRLEKQKAERRSKYVSNVNLYVKNLDDEIDDE 299
Query: 199 EFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT 258
+++ GP + + +++ D + +R++GF FV + N + + + +T AN +++ +
Sbjct: 300 RLKEIFSKYGP-ISSAKVMTD--SNNRSKGFGFVCFTN---PEQATKAVTEANGRVEYSK 353
Query: 259 P 259
P
Sbjct: 354 P 354
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 121/270 (44%), Gaps = 16/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
S +++G L +E L + IG V + + +D + S G+A+V F+S A AID
Sbjct: 32 SSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHAID 91
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L + GK IR S+ + +FI N+ K+ K G + + +
Sbjct: 92 VLNFQVINGKPIRVLYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGT-ITSAK 150
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D S +G+ FV + A+ ++ + + N ++ N V + D S
Sbjct: 151 VAMDSAGNS--KGYGFVQF---ETAEAAQAAIDNVN-GMELNDKQVYVGPFQRRADRSTQ 204
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
++ +YVKNL EN + ++L+E F HG VT V + GK + FGF+ + A
Sbjct: 205 GEAKFNNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMKDEEGKSKGFGFVCFESPEGAA 264
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+++ + Y D + V A+ + + E
Sbjct: 265 SAVENLDGYTEDEKTWVVCRAQKKAEREAE 294
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 132/313 (42%), Gaps = 52/313 (16%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + + D +G SKG+ FV F + E A+ AID +
Sbjct: 122 IFIKNLDKAIDNKALLDTFAQFGTITSAKVAMD-SAGNSKGYGFVQFETAEAAQAAIDNV 180
Query: 166 CSKDFKGKTI----------RCSMSETN-NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTI 214
+ K + R + E N +++ N+ ++ ++++ R+ + G V +
Sbjct: 181 NGMELNDKQVYVGPFQRRADRSTQGEAKFNNVYVKNLSENLSDEKLREKFAEHG-AVTSC 239
Query: 215 ELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG-----NTPTVSWAEPKST 269
++KD + S+ GF FV + S + SA LDG T V A+ K+
Sbjct: 240 VIMKDEEGKSK--GFGFVCFE-------SPEGAASAVENLDGYTEDEKTWVVCRAQKKAE 290
Query: 270 PDHSAAAASQVKA-----------LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG 318
+ A + + LY+KNL E T ++L+ELF G +T SG
Sbjct: 291 REAELKAKFEAERRERMEKMAGANLYIKNLEEGTDDEKLRELFNEFGTITSCRVMRDASG 350
Query: 319 -KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSG 377
R F+ ++ A +A+ + + + L VALA +R E + +G
Sbjct: 351 ASRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYVALA-----QRKEEPH--------AG 397
Query: 378 LPHAGYGSFAGTA 390
HAGYG TA
Sbjct: 398 RWHAGYGPVHATA 410
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 119/270 (44%), Gaps = 14/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ ++IG L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFG-DILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D +RG+ FV + A+ + Q M D + + A
Sbjct: 130 VVCDEYG---SRGYGFVHFETQEAANRAIQTMNGMLLN-DRKVFVGHFKSRRERELEYGA 185
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
+ +Y+KN E+ K+LKE+F G V SG+ R FGF++Y A
Sbjct: 186 KVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQ 245
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + E++G+++ V A+ + ++ E
Sbjct: 246 KAVTEMNGKEVNGRMVYVGRAQKRIERQGE 275
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 124/280 (44%), Gaps = 40/280 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + L D G++ +V D+ S+G+ FV F ++E A RAI +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTM 158
Query: 166 CSK----------DFKGKTIR-----CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
FK + R + E N ++I N + +K +++ G
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTN-VYIKNFGEDMDDKRLKEIFSAFGNT 217
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPK-S 268
+ +++++ D R+RGF FV Y N+ + +++ +T N K ++G V A+ +
Sbjct: 218 L-SVKVMMDNSG--RSRGFGFVNYGNH---EEAQKAVTEMNGKEVNGRMVYVGRAQKRIE 271
Query: 269 TPDHSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEV--TKVVTPPGK 316
Q+K LYVKNL + +L++ F +G + TKV+T G
Sbjct: 272 RQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGH 331
Query: 317 SGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 332 S--KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
>gi|38541222|gb|AAH62832.1| Pabpc1a protein, partial [Danio rerio]
Length = 327
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 126/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KG+ +R S+ + +FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETHEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LKE+F ++G + SGK + FGF+ +
Sbjct: 183 MGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A +A+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTE 275
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T +A E ++ K + KE+ ++ A + V
Sbjct: 134 ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+++ G + ++ D DSG+SKGF FV+F E A+RA+DE+
Sbjct: 194 YIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK +
Sbjct: 253 GKEMNGKQV 261
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 32/228 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F + E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + +++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+I ++ D S+ GF FV + + A + +M +++G V A+ K
Sbjct: 219 -SIRVMTDDSGKSK--GFGFVSFERHEDAQRAVDEMNGK--EMNGKQVYVGRAQKKGERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT 308
Q LYVKNL + ++L++ F G +T
Sbjct: 274 TELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTIT 321
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 126/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KG+ +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETHEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LKE+F ++G + SGK + FGF+ +
Sbjct: 183 MGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A +A+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTE 275
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F + E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + +++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+I ++ D +++GF FV + + A + +M +++G V A+ K
Sbjct: 219 -SIRVMTDDSG--KSKGFGFVSFERHEDAQRAVDEMNGK--EMNGKQVYVGRAQKKGERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T +A E ++ K + KE+ ++ A + V
Sbjct: 134 ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+++ G + ++ D DSG+SKGF FV+F E A+RA+DE+
Sbjct: 194 YIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK +
Sbjct: 253 GKEMNGKQV 261
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 127/274 (46%), Gaps = 14/274 (5%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 55 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 114
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KG+ R S+ + L FI N+ + K G +
Sbjct: 115 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 173
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + + K
Sbjct: 174 SCKVAQDEYGNSKGYGF---VHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSK 230
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGK-RDFGFIHYAER 330
+ +YVKN+ ++ T ++ + LF+++GE+T ++ ++GK R FGF+++++
Sbjct: 231 FEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDH 290
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A A++ +YE+ GQ L V A+ + + E
Sbjct: 291 EAASAAVEALNEYELKGQKLYVGRAQKKHEREEE 324
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 12/118 (10%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + +++ + +D ++E+ R L E GE+ L +D ++G+S+GF
Sbjct: 224 KKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFG 283
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIE 205
FV F E A A++ L + KG+ +L++G K E+E RK E
Sbjct: 284 FVNFSDHEAASAAVEALNEYELKGQ-----------KLYVGRAQKKHEREEELRKQYE 330
>gi|242062048|ref|XP_002452313.1| hypothetical protein SORBIDRAFT_04g023540 [Sorghum bicolor]
gi|241932144|gb|EES05289.1| hypothetical protein SORBIDRAFT_04g023540 [Sorghum bicolor]
Length = 435
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 128/278 (46%), Gaps = 23/278 (8%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+++G L E L P GEV + +++++ SG S+G+ FV F S A++A+
Sbjct: 111 IWVGDLQYWMDENYLHSCFGPSGEVVNIKVIRNRHSGVSEGYGFVEFYSHVSAEKALQNF 170
Query: 166 CS-------KDFKGKTIRCSMSE------TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVD 212
+ FK SM E +++ +F+G++ T++ ++ + V
Sbjct: 171 SGHVMPNTDRAFKLNWASYSMGEKRTELSSDHSIFVGDLAVDVTDEMLLELFSNKYRSVK 230
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKM-----TSANFKLDGNTPTVSWAEPK 267
++I D R+RG+ FV + ++ ++ +M ++ ++ TP S +
Sbjct: 231 GAKVIIDANT-GRSRGYGFVRFGDDNDKTHAMTEMNGVYCSTRPIRVGPATPRRSQGDSG 289
Query: 268 STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHY 327
S+P + S + +YV L N + +L++ F ++G++ V P GK GF+ +
Sbjct: 290 SSPPRQSDVDSTNRTVYVGGLDPNVSEDELRKAFAKYGDLASVKIPFGK----QCGFVQF 345
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEG 365
R+ A +A++ I Q + ++ R +K++ G
Sbjct: 346 VNRADAEEALQGLNGATIGKQAVRLSWGRSPASKQSRG 383
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 119/268 (44%), Gaps = 15/268 (5%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+++G L ++ L +L G+V V + +D S S G+A+V F + A RA++ L
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 166 CSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
GK IR S + +FI N+ K+ K G + + ++
Sbjct: 101 NFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFG-NILSCKVA 159
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAA 277
D S +GF FV Y A + + S N L + P + ++
Sbjct: 160 TDEMGQS--KGFGFVQYDKGEAA---QSAIKSLNGMLINDKPVYVGPFLRKQERENSVDK 214
Query: 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKA 336
++ ++VKNL E+TT + L ++F +G +T V G GK R FGFI++ A +A
Sbjct: 215 TKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARA 274
Query: 337 IKDTEKYEIDGQVLEVALARPQTNKRTE 364
+++ +I+ + V A+ ++ + E
Sbjct: 275 VEELNGKKINDKEWYVGRAQKKSEREIE 302
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 90/379 (23%), Positives = 155/379 (40%), Gaps = 54/379 (14%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +FI L K + L D G + + D + G+SKGF FV + E A+ AI
Sbjct: 127 ANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATD-EMGQSKGFGFVQYDKGEAAQSAIK 185
Query: 164 ELCSKDFKGKTIRC-----------SMSETN-NRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
L K + S+ +T N +F+ N+ +S T+++ K+ G
Sbjct: 186 SLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNIT 245
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ ++ ++R F F+ + + A + +++ K++ V A+ KS +
Sbjct: 246 SAVIMVG---MDGKSRCFGFINFKSPDDAARAVEELNGK--KINDKEWYVGRAQKKSERE 300
Query: 272 -----------HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-K 319
AA Q LY+KNL ++ QL ELF +G++T +G
Sbjct: 301 IELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVS 360
Query: 320 RDFGFIHYAERSSALKAIKDTEK--YEIDGQVLEVALARPQTNKRT--EGVYSCAAGV-- 373
+ GF+ + S L I+ TE I G+ L VA A+ + +++ + +S V
Sbjct: 361 KGSGFVAF----STLPFIQLTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQVRPVPM 416
Query: 374 HPSGLPH---------AGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMV 424
PS P G F G A ++ + G G QQ ++ G P G HM
Sbjct: 417 TPSMAPRLPMYPPMAPLGQQLFYGQAPPAI---MPPQPGFGFQQQLV--PGMRPGGAHMP 471
Query: 425 PMVLPDGRIGYVLQQPGVQ 443
+P + G +PG++
Sbjct: 472 NYFVPVVQQGQQGPRPGIR 490
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 121/270 (44%), Gaps = 14/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D +RGF FV + + A + M D + + A
Sbjct: 130 VVCDEHG---SRGFGFVHFETHEAAQNAISTMNGMLLN-DRKVFVGHFKSRREREVELGA 185
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERSSAL 334
A + +YVKNL + ++L++LF + G++ V SG R FGF+++ + A
Sbjct: 186 RAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDVSGHSRGFGFVNFEKHEEAQ 245
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + E+ G++L V A+ + ++ E
Sbjct: 246 KAVVNMNGREVSGRLLYVGRAQKRVERQNE 275
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 116/279 (41%), Gaps = 40/279 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + +V D+ S+GF FV F + E A+ AI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQNAISTM 158
Query: 166 CSK----------DFKGKTIR------CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
FK + R +M TN +++ N+ E+ + + G
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREVELGARAMEFTN--IYVKNLHVDVDEQRLQDLFSQFGK 216
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST 269
+ ++++++D +RGF FV + + A + M ++ G V A+ +
Sbjct: 217 ML-SVKVMRD--VSGHSRGFGFVNFEKHEEAQKAVVNMNGR--EVSGRLLYVGRAQKRVE 271
Query: 270 PDHSA-----------AAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGK 316
+ Q LYVKNL ++ ++L++ F +G +T KV+T G
Sbjct: 272 RQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGH 331
Query: 317 SGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355
S + FGF+ ++ A KA+ + + + L VALA
Sbjct: 332 S--KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
E+ K D+L G +++ L +E LR P G + ++ + G SKGF
Sbjct: 281 EQMKQDRLTRY--QGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE--GGHSKGFG 336
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181
FV F S E A +A+ E+ + K + +++E
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAE 369
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 120/270 (44%), Gaps = 14/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ +S K G + + +
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D +RG+ FV + A+ + Q M D + + A
Sbjct: 130 VVCDEHG---SRGYGFVHFETQEAANRAIQTMNGMLLN-DRKVFVGHFKSRRERELEYGA 185
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
+ +Y+KN E+ K+L+E+F G V +G+ R FGF++Y A
Sbjct: 186 KVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQ 245
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + E++G+++ V A+ + ++ E
Sbjct: 246 KAVSEMNGKEVNGRMIYVGRAQKRIERQGE 275
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 118/279 (42%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + + L D G + +V D+ S+G+ FV F ++E A RAI +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTM 158
Query: 166 CSK----------DFKGKTIR-----CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
FK + R + E N ++I N + +K R++ G
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTN-VYIKNFGEDMDDKRLREIFSAFGNT 217
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK-ST 269
+ ++ D R+RGF FV Y N+ A + +M +++G V A+ +
Sbjct: 218 LSVKVMMDDT---GRSRGFGFVNYGNHEEAQKAVSEMNGK--EVNGRMIYVGRAQKRIER 272
Query: 270 PDHSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
Q+K LYVKNL + +L++ F +G +T KV+T G S
Sbjct: 273 QGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
+ D +RGF FV + + A +Q + + N L N V KS + A
Sbjct: 130 VACDEHG---SRGFGFVHFETHEAA---QQAINTMNGMLL-NDRKVFVGHFKSRREREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERS 331
A A + +YVKNLP + + L++LF + G++ V SG R FGF+++ +
Sbjct: 183 LGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ E+ G++L A+ + ++ E
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 69 INTEDAVEDEDKRT-ASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPI 127
INT + + D++ + +E+ +L A + +++ LP D E+ L+DL
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQF 214
Query: 128 GEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
G++ V +++D +SG S+ F FV F E A++A+ + K+ G+ +
Sbjct: 215 GKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 120/279 (43%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + + D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ R +E R +++ N+P E+ + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPK-ST 269
++++++D SR GF N + +++ + N K + G A+ +
Sbjct: 219 -SVKVMRDNSGHSRCFGFV-----NFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVER 272
Query: 270 PDHSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q+K LYVKNL ++ +L++ F +G +T KV+T G S
Sbjct: 273 QNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
>gi|156400838|ref|XP_001638999.1| predicted protein [Nematostella vectensis]
gi|156226124|gb|EDO46936.1| predicted protein [Nematostella vectensis]
Length = 301
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 120/257 (46%), Gaps = 16/257 (6%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++ I GLP + +DL+ ++F+ VKD G K A V F E A+ I
Sbjct: 40 KLVITGLPDNVDLQDLKS------KIFQGYDVKDLVIGHVKNTATVVFGGIEQARSVISF 93
Query: 165 LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPS 224
L + + KT+ S + + LF+GN+P +TE +F ++ G ++ + L++ +
Sbjct: 94 LNTCKYHDKTLNVSPAPPESLLFVGNLPFEFTETQFGDLMSPYG-NIERLFLVRS-EVTG 151
Query: 225 RNRGFAFVLYYNNACADYSRQK-MTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKAL 283
++G+ FV Y A ++Q+ + +A+ + G V++AE + A + L
Sbjct: 152 DSKGYGFVEYATRENAMQAKQQLLNTASKYIGGRILRVAFAE----SNLLTYADVHSRTL 207
Query: 284 YVKNLPENTTTKQL-KELFQRHGEVT--KVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340
+V LP + L KELF + G VT +V P G R F F+ YA A K +
Sbjct: 208 FVDRLPRDFKNGGLIKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQRAH 267
Query: 341 EKYEIDGQVLEVALARP 357
+++G + VA P
Sbjct: 268 NGRQVEGSNIRVAYGSP 284
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 95/192 (49%), Gaps = 19/192 (9%)
Query: 93 HDQLLALPPHGSE--VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFV 150
HD+ L + P E +F+G LP + +E DL P G + + LV+ + +G+SKG+ FV
Sbjct: 100 HDKTLNVSPAPPESLLFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFV 159
Query: 151 AFRSKEVAKRAIDELC---SKDFKGKTIRCSMSETN---------NRLFIGNVPKSWTEK 198
+ ++E A +A +L SK G+ +R + +E+N LF+ +P+ +
Sbjct: 160 EYATRENAMQAKQQLLNTASKYIGGRILRVAFAESNLLTYADVHSRTLFVDRLPRDFKNG 219
Query: 199 EFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK-LDGN 257
K + V ++ +P A +RGFAFV Y A A+ + + + N + ++G+
Sbjct: 220 GLIKELFSQTGNVTFAQVAINP-ANGGSRGFAFVDY---ATAEEAEKGQRAHNGRQVEGS 275
Query: 258 TPTVSWAEPKST 269
V++ P T
Sbjct: 276 NIRVAYGSPGRT 287
>gi|417410140|gb|JAA51547.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 369
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 86/154 (55%), Gaps = 9/154 (5%)
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTP 270
VD I L P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P P
Sbjct: 10 VDVI-LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEP 68
Query: 271 DHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAER 330
D A +VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R
Sbjct: 69 DPEVMA--KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDR 120
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A+KA+ + EI+G+ +E+ LA+P KR E
Sbjct: 121 GAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKE 154
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 126/278 (45%), Gaps = 21/278 (7%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P + +++G L +E L +L IG V + + +D + S G+A+V + S +
Sbjct: 60 PQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTADGE 119
Query: 160 RAIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGV 211
+A++EL KG+ R S+ + L FI N+ + K G +
Sbjct: 120 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NI 178
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ ++ +D S +G+ FV Y + A + + + L+ V + PK
Sbjct: 179 LSCKVAQDENGNS--KGYGFVHYETDEAAAQAIKHVNG--MLLNEKKVYVGYHIPKK--- 231
Query: 272 HSAAAASQVKA----LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIH 326
+ ++KA +YVKN+ T ++ +ELF ++GEVT + GK R FGF++
Sbjct: 232 DRQSKFEEMKANYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQEGKSRGFGFVN 291
Query: 327 YAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
++ SA KA+++ E GQ L V A+ + + E
Sbjct: 292 FSTHDSAAKAVEELNGKEFRGQELYVGRAQKKHEREEE 329
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 93/427 (21%), Positives = 155/427 (36%), Gaps = 123/427 (28%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + L D G + + +D ++G SKG+ FV + + E A +AI +
Sbjct: 154 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHV 212
Query: 166 CSKDFKGKTIRCS--------------MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
K + M +++ N+ TE+EFR++ G V
Sbjct: 213 NGMLLNEKKVYVGYHIPKKDRQSKFEEMKANYTNVYVKNINLEVTEEEFRELFSKYGE-V 271
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ L +D + ++RGF FV + + A + +++ F+ G V A+ K +
Sbjct: 272 TSSTLARDQEG--KSRGFGFVNFSTHDSAAKAVEELNGKEFR--GQELYVGRAQKKHERE 327
Query: 272 H----SAAAASQVKA-------LYVKNLPENTTTKQLKELFQRHGEVT--KVV--TPPG- 315
S AA KA LY+KNL ++ +L+++F G +T KV+ PP
Sbjct: 328 EELRKSYEAARAEKANKYQGVNLYIKNLADDIDDDKLRQMFSEFGPITSAKVMRDNPPDH 387
Query: 316 -----KSGK--------------------------------------------RDFGFIH 326
K GK + FGF+
Sbjct: 388 HHSADKEGKDKENKKEGEQEAKKEGKEEGEKDGEAKEGEKKTEKKPERKLGKSKGFGFVC 447
Query: 327 YAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAA--------GVHPSGL 378
++ A KA+ + + ++G+ L VALA+ + ++++ S A +GL
Sbjct: 448 FSNPDDATKAVAEMNQRMVEGKPLYVALAQRKDVRKSQLEASIQARNQLRMQQAAAQAGL 507
Query: 379 PHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQ 438
P +Q P+ Y GQ P M P G G
Sbjct: 508 PQ-----------------------QYMQAPIYYAPGQQPNFM-------PPGGRGMPFP 537
Query: 439 QPGVQMP 445
Q G+ MP
Sbjct: 538 QAGLGMP 544
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
+ D +RGF FV + + A +Q + + N L N V KS + A
Sbjct: 130 VACDEHG---SRGFGFVHFETHEAA---QQAINTMNGMLL-NDRKVFVGHFKSRREREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERS 331
A A + +YVKNLP + + L++LF + G++ V SG R FGF+++ +
Sbjct: 183 LGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ E+ G++L A+ + ++ E
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 69 INTEDAVEDEDKRT-ASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPI 127
INT + + D++ + +E+ +L A + +++ LP D E+ L+DL
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQF 214
Query: 128 GEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
G++ V +++D +SG S+ F FV F E A++A+ + K+ G+ +
Sbjct: 215 GKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 120/279 (43%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + + D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ R +E R +++ N+P E+ + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPK-ST 269
++++++D SR GF N + +++ + N K + G A+ +
Sbjct: 219 -SVKVMRDNSGHSRCFGFV-----NFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVER 272
Query: 270 PDHSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q+K LYVKNL ++ +L++ F +G +T KV+T G S
Sbjct: 273 QNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
+ D +RGF FV + + A +Q + + N L N V KS + A
Sbjct: 130 VACDEHG---SRGFGFVHFETHEAA---QQAINTMNGMLL-NDRKVFVGHFKSRREREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERS 331
A A + +YVKNLP + + L++LF + G++ V SG R FGF+++ +
Sbjct: 183 LGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ E+ G++L A+ + ++ E
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 69 INTEDAVEDEDKRT-ASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPI 127
INT + + D++ + +E+ +L A + +++ LP D E+ L+DL
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQF 214
Query: 128 GEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
G++ V +++D +SG S+ F FV F E A++A+ + K+ G+ +
Sbjct: 215 GKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 120/279 (43%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + + D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ R +E R +++ N+P E+ + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPK-ST 269
++++++D SR GF N + +++ + N K + G A+ +
Sbjct: 219 -SVKVMRDNSGHSRCFGFV-----NFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVER 272
Query: 270 PDHSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q+K LYVKNL ++ +L++ F +G +T KV+T G S
Sbjct: 273 QNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 123/272 (45%), Gaps = 19/272 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L + ++ L D +G V V + +D + S G+ +V F + + A RAI
Sbjct: 36 TSLYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAIQ 95
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
EL GK IR S + +FI N+ +S K G + + +
Sbjct: 96 ELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSVFG-NIVSCK 154
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSA--NFKLDGNTPTVSWAEPKSTPDHS 273
+ D + +++G+ FV Y N A + +K+ N K P + E ST
Sbjct: 155 VAVD--SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDST---- 208
Query: 274 AAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGKRDFGFIHYAERSS 332
A ++ +YVKNL E+TT LK F +G++T VV G + FGF+++
Sbjct: 209 -ANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGDGKSKGFGFVNFENADD 267
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A +A++ ++ D + V A+ ++ + TE
Sbjct: 268 AARAVESLNGHKFDDKEWYVGRAQKKSERETE 299
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 146/336 (43%), Gaps = 49/336 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + + L D G + + D SG+SKG+ FV + ++E A++AI++L
Sbjct: 126 IFIKNLDESIDHKALHDTFSVFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKL 184
Query: 166 CSKDFKGKTI-------RCSMSETNNR-----LFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
K + R T N+ +++ N+ +S T+ + + + G + +
Sbjct: 185 NGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK-ITS 243
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAEPKSTPD- 271
++KD +++GF FV + N AD + + + S N K D V A+ KS +
Sbjct: 244 AVVMKD--GDGKSKGFGFVNFEN---ADDAARAVESLNGHKFDDKEWYVGRAQKKSERET 298
Query: 272 ----------HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGK 319
AA Q LYVKNL + + ++LKE+F G VT KV+ P + K
Sbjct: 299 ELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSCKVMRDPNGTSK 358
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLP 379
GF+ ++ A +A+ I+ + L VA+A+ + ++R + + PS P
Sbjct: 359 GS-GFVAFSTPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRAQFSQVRPVAMQPSVGP 417
Query: 380 HAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRG 415
+ G G+ Q M YG+G
Sbjct: 418 R---------------MPVYPPGGPGIGQQMFYGQG 438
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 76 EDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGL 135
E E + ++ KE D+ S +++ L S+E L+++ P G V +
Sbjct: 295 ERETELRVRYEQNLKEAADKF-----QSSNLYVKNLDPSISDEKLKEIFSPFGTVTSCKV 349
Query: 136 VKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181
++D + G SKG FVAF + E A A+ +L K + K + ++++
Sbjct: 350 MRDPN-GTSKGSGFVAFSTPEEATEAMSQLSGKMIESKPLYVAIAQ 394
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Query: 250 ANFKLDGNTPTVSWAEPKSTPDHS---AAAASQVKALYVKNLPENTTTKQLKELFQRHGE 306
A +L G TP S S P S AA +LYV +L N T QL + F + G
Sbjct: 2 AQVQLQGQTPNGSTVAVTSAPVTSGGATAAGFGTTSLYVGDLDVNVTDSQLFDAFSQMGP 61
Query: 307 VTKVVTPPGKSGKRD--FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
V V + +R +G++++ A +AI++ + G+ + V + + R
Sbjct: 62 VVSVRVCRDLATRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRS 121
Query: 365 G 365
G
Sbjct: 122 G 122
>gi|356537017|ref|XP_003537028.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 502
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 142/337 (42%), Gaps = 48/337 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VF+ L L DL + G + +V D G+SKG+ FV F S+E A AI++L
Sbjct: 102 VFVKNLAGSIDNAGLHDLFQKYGNILSSKVVMSGD-GKSKGYGFVQFESEESANNAIEKL 160
Query: 166 C------SKDFKGKTIR--------CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
+ + GK +R TN L+I N+ TE ++ G
Sbjct: 161 NGSTVGDKQIYVGKFVRKGDRILPGYDAKYTN--LYIKNLDSDITEALLQEKFSSFG--- 215
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAEPKSTP 270
I L+ ++GFAFV Y N D +R+ M + N K V+ A+ K+
Sbjct: 216 KIISLVISKDDNGLSKGFAFVNYEN---PDDARKAMEAMNGLKFGSKNLYVARAQKKAER 272
Query: 271 DH-----------SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSG 318
+ Q LYVKN+ ++ T K+L++LF G +T V V K
Sbjct: 273 EQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRDDKGI 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE----------GVYS 368
+ FGF+ ++ A KA++ + L +A+A+ + +++T+ G+
Sbjct: 333 SKGFGFVCFSNPEEANKAVRSFNGCMFHRKPLYIAIAQRKMDRKTQLNLHYAPQQTGLDG 392
Query: 369 CAAGVHPSGLPHAGYGSFAGTAY--GSVSTGLGVAAG 403
+ V P G P Y S A + G + LG+ +G
Sbjct: 393 SSTPVIPGGFPPYFYHSVASQMFQSGLLYQPLGLRSG 429
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 51/269 (18%), Positives = 113/269 (42%), Gaps = 19/269 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L + + L + + V + +D+ + +S + +V F+S++ A RA+
Sbjct: 12 ASLYVGDLHSEVVDHHLFEAFAEFKTMDSVRVCRDRVTMKSLCYGYVNFKSQQDAIRAMK 71
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ GK IR S + +F+ N+ S + + G + +
Sbjct: 72 LKNNSYLNGKVIRVMWSHPDPSARKSGRGNVFVKNLAGSIDNAGLHDLFQKYGNILSSKV 131
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEP--KSTPDHS 273
++ +++G+ FV + + A+ + +K+ + D + + P +
Sbjct: 132 VM---SGDGKSKGYGFVQFESEESANNAIEKLNGSTVG-DKQIYVGKFVRKGDRILPGYD 187
Query: 274 AAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERSS 332
A + LY+KNL + T L+E F G++ +V +G + F F++Y
Sbjct: 188 AKYTN----LYIKNLDSDITEALLQEKFSSFGKIISLVISKDDNGLSKGFAFVNYENPDD 243
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNK 361
A KA++ + + L VA A+ + +
Sbjct: 244 ARKAMEAMNGLKFGSKNLYVARAQKKAER 272
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 124/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D S S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ +R S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D +RG FV + A + Q M N V KS + A
Sbjct: 130 VVCDENG---SRGHGFVHFETQEAATRAIQTMNGMLL----NDRKVFVGHFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN ++ +L+E+F R G+ V +G+ + FGF+++ +
Sbjct: 183 FGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ D EI+G+++ V A+ + +++E
Sbjct: 243 EAQKAVADMNGKEINGRMVYVGRAQKRLERQSE 275
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 117/280 (41%), Gaps = 40/280 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + L D G + +V D++ S+G FV F ++E A RAI +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG--SRGHGFVHFETQEAATRAIQTM 158
Query: 166 CSK----------DFKGKTIR------CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
FK + R +M TN ++I N + R++ G
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTN--VYIKNFGDDMDDNRLREIFSRFGK 216
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK-- 267
+ +++++ D R++GF FV + + A + M +++G V A+ +
Sbjct: 217 TL-SVKVMMDHTG--RSKGFGFVNFEKHEEAQKAVADMNGK--EINGRMVYVGRAQKRLE 271
Query: 268 ---------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGK 316
+ Q LYVKNL + ++L++ F +G +T KV+T G
Sbjct: 272 RQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGH 331
Query: 317 SGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 332 S--KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ + A + V+I D + LR++ G+ V ++ D +G SKG
Sbjct: 174 KSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-HTGRSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
F FV F E A++A+ ++ K+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVADMNGKEINGRMV 261
>gi|355694936|gb|AER99836.1| heteroproteinous nuclear ribonucleoprotein R [Mustela putorius
furo]
Length = 363
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 86/154 (55%), Gaps = 9/154 (5%)
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTP 270
VD I L P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P P
Sbjct: 5 VDVI-LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEP 63
Query: 271 DHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAER 330
D A +VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R
Sbjct: 64 DPEVMA--KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDR 115
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A+KA+ + EI+G+ +E+ LA+P KR E
Sbjct: 116 GAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKE 149
>gi|341884731|gb|EGT40666.1| CBN-PAB-2 protein [Caenorhabditis brenneri]
Length = 707
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 125/276 (45%), Gaps = 19/276 (6%)
Query: 97 LALPPHGS----EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAF 152
+ PP+ + ++IG L D +E L + G V + + +D S S G+A+V F
Sbjct: 51 IGYPPNATYSMASLYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNF 110
Query: 153 RSKEVAKRAIDELCSKDFKGKTIRCSMSET--------NNRLFIGNVPKSWTEKEFRKVI 204
+ A+RA+D + + G+ +R S+ N +FI N+ + K
Sbjct: 111 QQPADAERALDTMNFEIIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTF 170
Query: 205 EDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWA 264
G + + ++ D S +G+ FV + A A + +K+ L V
Sbjct: 171 SLFG-NILSCKVATDDDGNS--KGYGFVHFETEASAQTAIEKVNG--MLLSDKKVFVGKF 225
Query: 265 EPKST-PDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDF 322
+P++ + + ++VKN E+ +LKE+F ++GE+ V GK + F
Sbjct: 226 QPRAQRMKELGESGLKYTNVFVKNFGEHLDEAKLKEMFSKYGEINSAVVMTDAEGKPKGF 285
Query: 323 GFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358
GF+ YA+ +A KA+ D + ++G L++++ R Q
Sbjct: 286 GFVAYADPEAASKAVDDLNESILEGTELKLSVCRAQ 321
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 123/289 (42%), Gaps = 38/289 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + + + D G + + D D G SKG+ FV F ++ A+ AI+++
Sbjct: 152 IFIKNLDRVIDNKSIYDTFSLFGNILSCKVATD-DDGNSKGYGFVHFETEASAQTAIEKV 210
Query: 166 C------SKDFKGKTI----------RCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
K F GK + TN +F+ N + E + +++ G
Sbjct: 211 NGMLLSDKKVFVGKFQPRAQRMKELGESGLKYTN--VFVKNFGEHLDEAKLKEMFSKYGE 268
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST 269
+++ ++ D A + +GF FV Y + A + + + L+G +S +
Sbjct: 269 -INSAVVMTD--AEGKPKGFGFVAYADPEAASKAVDDLNES--ILEGTELKLSVCRAQKK 323
Query: 270 PDHSAAAASQVKAL-------------YVKNLPENTTTKQLKELFQRHGEVTKVVTPPGK 316
+ SA + +AL YVKN+ E T + L+ F + G +T +
Sbjct: 324 SERSAELKRKYEALKQERVQRYQGVNLYVKNIEEELTDEGLRAHFAQFGTITSAKVMVDE 383
Query: 317 SGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+G+ + FGF+ + + A A+ + I + L VALA+ + ++R +
Sbjct: 384 NGRSKGFGFVCFEKPEEATAAVTEMNSKMIGAKPLYVALAQRKEDRRAQ 432
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 85/203 (41%), Gaps = 36/203 (17%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ VF+ + E L+++ GE+ ++ D + G+ KGF FVA+ E A +A+D
Sbjct: 243 TNVFVKNFGEHLDEAKLKEMFSKYGEINSAVVMTDAE-GKPKGFGFVAYADPEAASKAVD 301
Query: 164 ELCSKDFKGKTIRCSMSETNNR--------------------------LFIGNVPKSWTE 197
+L +G ++ S+ + L++ N+ + T+
Sbjct: 302 DLNESILEGTELKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEELTD 361
Query: 198 KEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGN 257
+ R G + + +++ D R++GF FV + A + +T N K+ G
Sbjct: 362 EGLRAHFAQFGT-ITSAKVMVDENG--RSKGFGFVCFEKPEEATAA---VTEMNSKMIGA 415
Query: 258 TPT-VSWAEPKSTPDHSAAAASQ 279
P V+ A+ K D A ASQ
Sbjct: 416 KPLYVALAQRKE--DRRAQLASQ 436
>gi|326432018|gb|EGD77588.1| hypothetical protein PTSG_08685 [Salpingoeca sp. ATCC 50818]
Length = 517
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 124/318 (38%), Gaps = 63/318 (19%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + I LP +E DLR+L +P G + + ++ D+ + +S G+ FV F + E A RAI
Sbjct: 84 NNLIINYLPPSVTESDLRELFKPFGTIKAIKIMTDRYTHKSLGYGFVEFETAEEAARAIQ 143
Query: 164 ELCSKDFKGKTIRCSM------SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
+ + + K ++ S+ S T L+I N+P++ TE + R + G + + L+
Sbjct: 144 AMNGRQYMNKRLKVSIARPSSSSITGANLYIKNLPRTITEDQLRAIFNPFG-EIISARLL 202
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTS---AN----------------------- 251
D P +G AFV + ACA+ + ++ + AN
Sbjct: 203 YDGDVP---KGIAFVRFDKRACAERAVAELNNTVPANCSQPIAVKFADTNRRSRAPSGSS 259
Query: 252 ---------------------FKLDGNTPTVSWAEPKSTPDHSAAAASQVKALY-----V 285
F+ PT++ +P P + Y V
Sbjct: 260 AGMHQGSMMAYPSMPMPYGGGFQQPQPQPTMAPLQPGFVPMSPDMLPPSARTPYGYCLFV 319
Query: 286 KNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYE 344
NLP LF G V ++ S R +GF+ + A AI++ Y+
Sbjct: 320 FNLPPFMDEDGFARLFANFGGVVSASISRKSLSQARRYGFVTMRDFGEAATAIQNLNDYD 379
Query: 345 IDGQVLEVALARPQTNKR 362
+ G L V+ + N R
Sbjct: 380 VFGYRLSVSFKSNRRNSR 397
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 95/229 (41%), Gaps = 25/229 (10%)
Query: 181 ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACA 240
E N L I +P S TE + R++ + G + I+++ D + ++ G+ FV + A
Sbjct: 81 EPRNNLIINYLPPSVTESDLRELFKPFG-TIKAIKIMTD-RYTHKSLGYGFVEFETAEEA 138
Query: 241 DYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKEL 300
+ Q M + VS A P S+ S A+ LY+KNLP T QL+ +
Sbjct: 139 ARAIQAMNGRQYM--NKRLKVSIARPSSS---SITGAN----LYIKNLPRTITEDQLRAI 189
Query: 301 FQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTN 360
F GE+ + F+ + +R+ A +A+ + +A+ TN
Sbjct: 190 FNPFGEIISARLLYDGDVPKGIAFVRFDKRACAERAVAELNNTVPANCSQPIAVKFADTN 249
Query: 361 KRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQP 409
+R+ +AG+H + AY S + + G G QQP
Sbjct: 250 RRSRAPSGSSAGMHQGSM----------MAYPS----MPMPYGGGFQQP 284
Score = 38.9 bits (89), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEV--TKVVTPPGKSGKRDFGFIH 326
T D SA L + LP + T L+ELF+ G + K++T +GF+
Sbjct: 72 TLDSSADTPEPRNNLIINYLPPSVTESDLRELFKPFGTIKAIKIMTDRYTHKSLGYGFVE 131
Query: 327 YAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRT 363
+ A +AI+ + + L+V++ARP ++ T
Sbjct: 132 FETAEEAARAIQAMNGRQYMNKRLKVSIARPSSSSIT 168
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 121/271 (44%), Gaps = 17/271 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L + ++ L D+ +G+V V + +D + S G+ +V + + + A RA+D
Sbjct: 12 TSLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 71
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L K IR S + +FI N+ K K G + + +
Sbjct: 72 VLNFTPLNNKPIRIMYSHRDPSIRKSGMANIFIKNLDKGIDHKALHDTFSSFG-NILSCK 130
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D A +++G+ FV + + A + K+ + N V D A
Sbjct: 131 VATD--ASGQSKGYGFVQFDSEEAAQNAIDKLNG----MLVNDKQVYVGHFLRKQDRDGA 184
Query: 276 AAS-QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSA 333
S + ++VKNL E+TT ++LK +F HG +T V GK + FGF+++ A
Sbjct: 185 LYSIKFNNVFVKNLAESTTDEELKNIFAEHGAITSAVVMRDADGKSKCFGFVNFESADDA 244
Query: 334 LKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA++ +IDG+ V A+ ++ + E
Sbjct: 245 AKAVEALNGKKIDGEEWYVGKAQKKSERELE 275
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 129/285 (45%), Gaps = 32/285 (11%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +FI L K + L D G + + D SG+SKG+ FV F S+E A+ AID
Sbjct: 100 ANIFIKNLDKGIDHKALHDTFSSFGNILSCKVATDA-SGQSKGYGFVQFDSEEAAQNAID 158
Query: 164 ELC------SKDFKGKTIR------CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
+L + + G +R S N +F+ N+ +S T++E + + + G +
Sbjct: 159 KLNGMLVNDKQVYVGHFLRKQDRDGALYSIKFNNVFVKNLAESTTDEELKNIFAEHG-AI 217
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAEPKSTP 270
+ +++D A +++ F FV N AD + + + + N K+DG V A+ KS
Sbjct: 218 TSAVVMRD--ADGKSKCFGFV---NFESADDAAKAVEALNGKKIDGEEWYVGKAQKKSER 272
Query: 271 D-----------HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG- 318
+ Q LY+KNL ++ ++LKELF G +T SG
Sbjct: 273 ELELKGRFEQSMKETVDKFQGLNLYIKNLDDSINDEKLKELFSDFGAITSCKVMRDPSGI 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRT 363
R GF+ ++ A +A+ + + + L VALA+ + +R
Sbjct: 333 SRGSGFVAFSTPEEASRALAEMNGKMLISKPLYVALAQRKEERRA 377
>gi|168229272|ref|NP_001094949.1| poly(A) binding protein, cytoplasmic 4-like [Mus musculus]
gi|148703238|gb|EDL35185.1| mCG12357 [Mus musculus]
Length = 370
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 131/280 (46%), Gaps = 20/280 (7%)
Query: 97 LALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
L + +++G L +D +E+ L +G V + + +D S S G+A+V F
Sbjct: 3 LEAKYRAASLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVN 62
Query: 157 VAKRAIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVG 208
A++A+ + KGK+IR S+ + L FI N+ KS K + G
Sbjct: 63 DAQKALVTMNFDVIKGKSIRLMWSQRDACLRRSGVGNVFIKNLDKSIDNKTLYEHFSPFG 122
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
+ + +++ D + ++G+ FV Y + AD + ++M + T+ A KS
Sbjct: 123 T-IMSSKVMTDGEG---SKGYGFVHYQDRRAADRAIEEMNGKLLR----ESTLFVARFKS 174
Query: 269 TPDHSAAAA---SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGF 324
D A ++ +Y+KN ++ ++L+E+F ++G+ V +GK + FGF
Sbjct: 175 RKDREAELRDKPTEFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGKSKGFGF 234
Query: 325 IHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ + +A A++D +I+GQ + V A+ + ++ E
Sbjct: 235 VSFDSHEAAKNAVEDMNGQDINGQTIFVGRAQKKVERQAE 274
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 29/171 (16%)
Query: 90 KEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAF 149
K++ +L P + V+I D +E LR++ G+ V ++KD +G+SKGF F
Sbjct: 176 KDREAELRDKPTEFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDA-TGKSKGFGF 234
Query: 150 VAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN------------------------NR 185
V+F S E AK A++++ +D G+TI ++ +
Sbjct: 235 VSFDSHEAAKNAVEDMNGQDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAK 294
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYN 236
L+I N+ + ++ RK G +I +K Q +++GF + +++
Sbjct: 295 LYIKNLDDTIDDETLRKEFSVFG----SICRVKVMQEAGQSKGFGLICFFS 341
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 105/248 (42%), Gaps = 34/248 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGE-SKGFAFVAFRSKEVAKRAIDE 164
VFI L K + L + P G + ++ D GE SKG+ FV ++ + A RAI+E
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGTIMSSKVMTD---GEGSKGYGFVHYQDRRAADRAIEE 156
Query: 165 LCSKDFKGKTIRCSMSETN--------------NRLFIGNVPKSWTEKEFRKVIEDVGPG 210
+ K + T+ + ++ ++I N +++ R+V G
Sbjct: 157 MNGKLLRESTLFVARFKSRKDREAELRDKPTEFTNVYIKNFGDDVDDEKLREVFSKYGQT 216
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ +++++KD A +++GF FV + ++ A + + M + ++G T V A+ K
Sbjct: 217 L-SVKVMKD--ATGKSKGFGFVSFDSHEAAKNAVEDMNGQD--INGQTIFVGRAQKKVER 271
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK 319
A Q LY+KNL + + L++ F G + +V
Sbjct: 272 QAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQEAGQS 331
Query: 320 RDFGFIHY 327
+ FG I +
Sbjct: 332 KGFGLICF 339
>gi|213408421|ref|XP_002174981.1| DAZ-associated protein [Schizosaccharomyces japonicus yFS275]
gi|212003028|gb|EEB08688.1| DAZ-associated protein [Schizosaccharomyces japonicus yFS275]
Length = 453
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 11/170 (6%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++FIGGL + ++E LRD E GEV + +++D +G S+GF F+ F+ + + + +
Sbjct: 121 KMFIGGLNWETTDESLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKDPKCVQVVMSK 180
Query: 165 LCSKDFK----GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVD-TIELIKD 219
D K + I E ++F+G VP TE+EFR G +D T+ + KD
Sbjct: 181 EHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPADCTEEEFRDFFNQFGRVLDATLMMDKD 240
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST 269
R RGF FV + N A + + M+ + G V A PK++
Sbjct: 241 ---TGRPRGFGFVTFENEAAVENT---MSQPYITIHGKPVEVKRATPKAS 284
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+++F+GG+P D +EE+ RD G V + L+ DKD+G +GF FV F ++ + +
Sbjct: 204 AKMFVGGVPADCTEEEFRDFFNQFGRVLDATLMMDKDTGRPRGFGFVTFENEAAVENTMS 263
Query: 164 E 164
+
Sbjct: 264 Q 264
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ +R S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEVIKGQPVRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D +RGF FV + + A Q + + N L N V KS + A
Sbjct: 130 VVCDDHG---SRGFGFVHFETHEAA---HQAIATMNGMLL-NDRKVFVGHFKSRREREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERS 331
A A + +YVKNL + + L++LF + G++ V G R FGF+++ +
Sbjct: 183 LGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ D E+ G++L V A+ + ++ E
Sbjct: 243 EAQKAVMDMNGKEVSGRLLYVGRAQKRVERQNE 275
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 120/278 (43%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + +V D D G S+GF FV F + E A +AI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-DHG-SRGFGFVHFETHEAAHQAIATM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ R +E R +++ N+ E+ + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKML 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
++++++D SR GF FV + + A + M ++ G V A+ +
Sbjct: 219 -SVKVMRDDIGHSR--GFGFVNFEKHEEAQKAVMDMNGK--EVSGRLLYVGRAQKRVERQ 273
Query: 272 HSA-----------AAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
+ A Q LYVKNL ++ ++L++ F +G +T KV+T G S
Sbjct: 274 NELKRRFEQMKQDRATRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
>gi|343959022|dbj|BAK63366.1| ELAV-like protein 1 [Pan troglodytes]
Length = 305
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 133/295 (45%), Gaps = 46/295 (15%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ + + LP++ ++++LR L IGEV L++DK +G S G+ FV + + + A+RAI+
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 164 ELCSKDFKGKTIRCSMSETNN------RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELI 217
L + KTI+ S + ++ L+I +P++ T+K+ + G +++ L+
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLV 139
Query: 218 KDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTP-------TVSWAEPKSTP 270
Q +RG AF+ + + A+ + +TS N G+ P TV +A +
Sbjct: 140 D--QTTGLSRGVAFIRFDKRSEAE---EAITSFN----GHKPPGSSEPITVKFAANPNPV 190
Query: 271 DHSA----------------------AAASQVKALYVKNLPENTTTKQLKELFQRHGEVT 308
H A AS +++ NL ++ L ++F G VT
Sbjct: 191 HHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVT 250
Query: 309 --KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNK 361
KV+ + + FGF+ A AI Y + ++L+V+ +++K
Sbjct: 251 NVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 305
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 144/322 (44%), Gaps = 37/322 (11%)
Query: 63 GANGS-HINTEDAVEDEDKRTASISEDEKEKHDQLLALP----PHGSEVFIGGLPKDASE 117
GANG+ +NT A AS+S + + A P P+ + +++G L +E
Sbjct: 23 GANGAPTLNTNTA--------ASMSSEYNDMPTPTSAAPSTAHPNSASLYVGELDPSVTE 74
Query: 118 EDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177
L +L +G+V + + +D + S G+A+V + S +RA++EL KG+ R
Sbjct: 75 AMLFELFSSVGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEELNYTLIKGRPCRI 134
Query: 178 SMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGF 229
S+ + L FI N+ + K G + + ++ D S +G+
Sbjct: 135 MWSQRDPALRKTGHGNVFIKNLDGAIDNKALHDTFAAFG-NILSCKVAVDELGNS--KGY 191
Query: 230 AFVLYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAEPKSTPDHSAAAASQVKA----LY 284
FV Y A+ + Q + S N L+ V PK + ++KA +Y
Sbjct: 192 GFVHY---ETAEAASQAIKSVNGMLLNEKKVFVGHHIPKK---DRMSKFEEMKANFTNIY 245
Query: 285 VKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSGK-RDFGFIHYAERSSALKAIKDTEK 342
VKN+ T + +ELF+++GE+T + ++GK R FGF++Y A KA+ +
Sbjct: 246 VKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGFVNYINHEDAYKAVDELND 305
Query: 343 YEIDGQVLEVALARPQTNKRTE 364
+ GQ L V A+ + + E
Sbjct: 306 SDFHGQKLYVGRAQKKHEREEE 327
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 110/451 (24%), Positives = 167/451 (37%), Gaps = 123/451 (27%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
HG+ VFI L + L D G + + D + G SKG+ FV + + E A +A
Sbjct: 148 HGN-VFIKNLDGAIDNKALHDTFAAFGNILSCKVAVD-ELGNSKGYGFVHYETAEAASQA 205
Query: 162 IDELC------SKDFKGKTI----RCS----MSETNNRLFIGNVPKSWTEKEFRKVIEDV 207
I + K F G I R S M +++ N+ T+ EFR++ E
Sbjct: 206 IKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIETEVTDDEFRELFEKY 265
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK 267
G + + L D + ++RGF FV Y N+ A + ++ ++F G V A+ K
Sbjct: 266 GE-ITSASLAHDNET-GKSRGFGFVNYINHEDAYKAVDELNDSDFH--GQKLYVGRAQKK 321
Query: 268 STPDHSA----AAASQVKA-------LYVKNLPENTTTKQLKELFQRHGEVTKV-----V 311
+ AA Q K+ LYVKNL + ++L+++F+ +G +T V
Sbjct: 322 HEREEELRKQYEAARQEKSAKYQGVNLYVKNLADEVDDEELRKIFEAYGAITSAKVMRDV 381
Query: 312 TPPGKS---------------------------------------------------GK- 319
TP K+ GK
Sbjct: 382 TPLDKAETDAKENKTDDKEKQVDGEPTEDKNGEEQEDMEELEKKMDTVTIGGEKKVLGKS 441
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLP 379
+ FGF+ ++ A KA+ + + I G+ L VALA+ + ++T+ S A
Sbjct: 442 KGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEVRKTQLEASIQARNQVRMQQ 501
Query: 380 HAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQ 439
A G G A +Q M G P G PM++P G G
Sbjct: 502 QATAG--------------GPMAPQFMQPQMFMG----PNGQ---PMMMPGGGRG----- 535
Query: 440 PGVQMPLPPPRPRRVERGPGGRGASSGGSDG 470
QMP P P G GA GG G
Sbjct: 536 -AAQMPFMPGMP--------GAGAQRGGFPG 557
>gi|268581545|ref|XP_002645756.1| C. briggsae CBR-PAB-2 protein [Caenorhabditis briggsae]
Length = 685
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 125/276 (45%), Gaps = 19/276 (6%)
Query: 97 LALPPHGS----EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAF 152
+ PP+ + ++IG L D +E L + G V + + +D S S G+A+V F
Sbjct: 41 MGYPPNATYSMASLYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNF 100
Query: 153 RSKEVAKRAIDELCSKDFKGKTIRCSMSET--------NNRLFIGNVPKSWTEKEFRKVI 204
+ A+RA+D + + G+ +R S+ N +FI N+ + K
Sbjct: 101 QQPADAERALDTMNFETIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTF 160
Query: 205 EDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWA 264
G + + ++ D S RG+ FV + A + +K+ L G V
Sbjct: 161 SLFG-NILSCKVAADEDGSS--RGYGFVHFETEESAQIAIEKVNG--MLLSGKKVYVGKF 215
Query: 265 EPKST-PDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDF 322
+ ++ + + ++VKN E+ ++L ++F ++GE+T V GK + F
Sbjct: 216 QTRAQRLKELGESGLKYTNVFVKNFGEHLDQEKLTKMFSKYGEITSAVVMTDADGKPKGF 275
Query: 323 GFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358
GF+ YA+ +A KA+ D + ++G L++++ R Q
Sbjct: 276 GFVAYADPDAAQKAVDDLNEKTLEGTDLKLSVCRAQ 311
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 123/290 (42%), Gaps = 40/290 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + + + D G + + D+D G S+G+ FV F ++E A+ AI+++
Sbjct: 142 IFIKNLDRVIDNKSIYDTFSLFGNILSCKVAADED-GSSRGYGFVHFETEESAQIAIEKV 200
Query: 166 CSKDFKGKTIRCSMSETN--------------NRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
GK + +T +F+ N + +++ K+ G
Sbjct: 201 NGMLLSGKKVYVGKFQTRAQRLKELGESGLKYTNVFVKNFGEHLDQEKLTKMFSKYGEIT 260
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYN-----NACADYSRQKMTSANFKLDGNTPTVSWAEP 266
+ + A + +GF FV Y + A D + + + + KL +V A+
Sbjct: 261 SAVVMT---DADGKPKGFGFVAYADPDAAQKAVDDLNEKTLEGTDLKL-----SVCRAQK 312
Query: 267 KS--TPD----HSAAAASQVKA-----LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPG 315
KS T D + A +V+ LYVKN+ E T + L+ F G +T
Sbjct: 313 KSERTADLKRKYEALKQERVQRYQGVNLYVKNIDEELTDEGLRAHFASFGTITSAKVMVD 372
Query: 316 KSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
++G+ + FGF+ + + A A+ + + + L VALA+ + ++R +
Sbjct: 373 ENGRSKGFGFVCFEKPEEATAAVTEMNSKMMGSKPLYVALAQRKEDRRAQ 422
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 36/203 (17%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ VF+ + +E L + GE+ ++ D D G+ KGF FVA+ + A++A+D
Sbjct: 233 TNVFVKNFGEHLDQEKLTKMFSKYGEITSAVVMTDAD-GKPKGFGFVAYADPDAAQKAVD 291
Query: 164 ELCSKDFKGKTIRCSMSETNNR--------------------------LFIGNVPKSWTE 197
+L K +G ++ S+ + L++ N+ + T+
Sbjct: 292 DLNEKTLEGTDLKLSVCRAQKKSERTADLKRKYEALKQERVQRYQGVNLYVKNIDEELTD 351
Query: 198 KEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGN 257
+ R G + + +++ D R++GF FV + A + +T N K+ G+
Sbjct: 352 EGLRAHFASFGT-ITSAKVMVDENG--RSKGFGFVCFEKPEEATAA---VTEMNSKMMGS 405
Query: 258 TPT-VSWAEPKSTPDHSAAAASQ 279
P V+ A+ K D A ASQ
Sbjct: 406 KPLYVALAQRKE--DRRAQLASQ 426
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 125/274 (45%), Gaps = 17/274 (6%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
+ + +++G L + +E L D+ P+G + + + +D + S G+A+V + E K+A
Sbjct: 48 NNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKA 107
Query: 162 IDELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
I EL + G+ R SE + +FI N+ + K + G V +
Sbjct: 108 IQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGE-VLS 166
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAEPKS-TPD 271
++ D S RGF FV + + A + + + N ++G V+ PK
Sbjct: 167 CKVALDENGNS--RGFGFVHFKEESDA---KDAIEAVNGMLMNGLEVYVAMHVPKKDRIS 221
Query: 272 HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAER 330
A + +YVKN+ TT ++ ++LF ++GE+ GK + FGF+++ +
Sbjct: 222 KLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDH 281
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
++A KA+++ E Q L V A+ + + E
Sbjct: 282 NAAAKAVEELNGKEFKSQALYVGRAQKKYERAEE 315
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 141/346 (40%), Gaps = 51/346 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L + GEV + D ++G S+GF FV F+ + AK AI+ +
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALD-ENGNSRGFGFVHFKEESDAKDAIEAV 198
Query: 166 CSKDFKGKTIRCSM-------------SETN-NRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
G + +M ++ N +++ N+ T++EF ++ G V
Sbjct: 199 NGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIV 258
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ L KD A + +GF FV + ++ A + +++ FK V A+ K
Sbjct: 259 -SAALEKD--AEGKPKGFGFVNFVDHNAAAKAVEELNGKEFK--SQALYVGRAQKKYERA 313
Query: 272 HSA-----------AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK- 319
A Q L++KNL ++ ++LKE F +G +T + G
Sbjct: 314 EELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNS 373
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAA-------- 371
+ FGF+ ++ A KA+ + + + G+ L VA+A+ + +R++ A
Sbjct: 374 KGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQIRFQQ 433
Query: 372 -----------GVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGL 406
G+ +P YG A + + G+ GAG+
Sbjct: 434 QQQQQAAAAAAGMPGQYMPQMFYGVMAPRGFPGPNPGMNGPMGAGI 479
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +FI L +E L++ P G + +++D++ G SKGF FV F S E A +A
Sbjct: 332 QGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQE-GNSKGFGFVCFSSPEEATKA 390
Query: 162 IDELCSKDFKGKTIRCSMSE 181
+ E + GK + ++++
Sbjct: 391 MTEKNQQIVAGKPLYVAIAQ 410
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 124/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KG+ +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETHEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LKELF +G V +GK + FGF+ +
Sbjct: 183 LGARAREFTNVYIKNFGEDMDDEKLKELFGNYGPALSVRVMTDDTGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ D E++G+ + V A+ + ++ E
Sbjct: 243 DAQKAVDDMNGKELNGRQVYVGRAQKKGERQNE 275
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 124/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F + E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + +++ +++ + GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFGNYGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ D +++GF FV + + A + M +L+G V A+ K
Sbjct: 219 SVRVMTDDT---GKSKGFGFVSFERHEDAQKAVDDMNGK--ELNGRQVYVGRAQKKGERQ 273
Query: 272 HSAAAA-SQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
+ Q+K LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 NELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T +A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L++L G V ++ D D+G+SKGF FV+F E A++A+D++
Sbjct: 194 YIKNFGEDMDDEKLKELFGNYGPALSVRVMTD-DTGKSKGFGFVSFERHEDAQKAVDDMN 252
Query: 167 SKDFKGKTI 175
K+ G+ +
Sbjct: 253 GKELNGRQV 261
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 123/271 (45%), Gaps = 15/271 (5%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
+ +++G L + + L D+ +G V V + +D +S +S G+A+V + ++ A RA+
Sbjct: 34 ATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARAL 93
Query: 163 DELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTI 214
+ L GK IR S + +FI N+ KS K G + +
Sbjct: 94 ELLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFG-NILSC 152
Query: 215 ELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
++ DP S RG+ FV + + A + K+ N L + + +
Sbjct: 153 KIATDPSGES--RGYGFVQFEKDESAQSAIDKL---NGMLINDKKVFVGPFVRKQDRENV 207
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSA 333
++ + +YVKNL + T +LKE+F ++G +T V GK R FGF+++ +A
Sbjct: 208 SSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAA 267
Query: 334 LKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A+++ + + L V A+ ++ + E
Sbjct: 268 AQAVQELNGKIFNDKELYVGRAQKKSEREME 298
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 108/411 (26%), Positives = 170/411 (41%), Gaps = 75/411 (18%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + + D SGES+G+ FV F E A+ AID+L
Sbjct: 125 IFIKNLDKSIDNKALYDTFCAFGNILSCKIATDP-SGESRGYGFVQFEKDESAQSAIDKL 183
Query: 166 C------SKDFKGKTIR------CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
K F G +R S + + +++ N+ + T+ E +++ G + +
Sbjct: 184 NGMLINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGT-ITS 242
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT-VSWAEPKSTPD- 271
+++D + ++R F FV + N AD + Q + N K+ + V A+ KS +
Sbjct: 243 AVVMRD--SDGKSRCFGFVNFEN---ADAAAQAVQELNGKIFNDKELYVGRAQKKSEREM 297
Query: 272 ----------HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KR 320
A Q LY+KNL EN ++L+ELF +G +T +G R
Sbjct: 298 ELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRDSNGVSR 357
Query: 321 DFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRT--EGVYSCAAGV----- 373
GF+ + A +A+ + + + L VALA+ + +++ + +S V
Sbjct: 358 GSGFVAFKSAEDANRALTEMNGKMVGSKPLYVALAQRKEDRKAKLQAQFSQMRPVAMAPS 417
Query: 374 -------HPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGR---GQMPAGMHM 423
P G+P G F G A QQP++ G G MP M
Sbjct: 418 VGPRMPMFPPGVPGVGQQLFYGQP---------PPAFINPQQPLMPGMRPGGPMPN--FM 466
Query: 424 VPMV-------LPDGRIGYVLQQPGVQMPL-----PPPRPRRVERGPGGRG 462
+PMV P GR +QQP MP+ PR R R P GRG
Sbjct: 467 MPMVQQGQQPQRPAGRRAGGMQQP---MPMGGQQQVFPRGGRGYRYPTGRG 514
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 91 EKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFV 150
EK+ Q +A + +++ L ++ +E LR+L G + +++D + G S+G FV
Sbjct: 304 EKNVQEVAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRDSN-GVSRGSGFV 362
Query: 151 AFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181
AF+S E A RA+ E+ K K + ++++
Sbjct: 363 AFKSAEDANRALTEMNGKMVGSKPLYVALAQ 393
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 125/271 (46%), Gaps = 16/271 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S +A+V F+ + A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L F+ N+ KS K + G + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG-NILSCN 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTV-SWAEPKSTPDHSA 274
++ D ++G+ FV + + A+ + +KM L+G V + K
Sbjct: 130 VVCDENG---SKGYGFVHFETHEAAERAIKKMNG--MLLNGRKVFVGQFKSRKEREAELG 184
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSA 333
A A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ + A
Sbjct: 185 ARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 334 LKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + E++G+ + V A+ + ++TE
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 120/278 (43%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+F+ L K + + L D G + +V D++ SKG+ FV F + E A+RAI ++
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKM 158
Query: 166 CSKDFKGKTIRCSMSETNN--------------RLFIGNVPKSWTEKEFRKVIEDVGPGV 211
G+ + ++ ++I N + ++ + + GP +
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
QV LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 42/213 (19%)
Query: 58 EDQSPGANGSHINTEDAVEDEDKRTASI-----------SEDEKEKHDQLLALPPHGSEV 106
E+ S G H T +A E K+ + + KE+ +L A V
Sbjct: 134 ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI-------------------------RCSMSETNNRLFIGNVPKSWTEKEFR 201
K+ GK I R + + N L++ N+ ++ R
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN-LYVKNLDDGIDDERLR 311
Query: 202 KVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLY 234
K G TI K R++GF FV +
Sbjct: 312 KAFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 125/271 (46%), Gaps = 16/271 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S +A+V F+ + A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L F+ N+ KS K + G + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG-NILSCN 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTV-SWAEPKSTPDHSA 274
++ D ++G+ FV + + A+ + +KM L+G V + K
Sbjct: 130 VVCDENG---SKGYGFVHFETHEAAERAIKKMNG--MLLNGRKVFVGQFKSRKEREAELG 184
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSA 333
A A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ + A
Sbjct: 185 ARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 334 LKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + E++G+ + V A+ + ++TE
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 119/278 (42%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+F+ L K + + L D G + +V D++ SKG+ FV F + E A+RAI ++
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKM 158
Query: 166 CSKDFKGKTIRCSMSETNN--------------RLFIGNVPKSWTEKEFRKVIEDVGPGV 211
G+ + ++ ++I N + ++ + + GP +
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D S+ GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESGKSK--GFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
QV LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 42/213 (19%)
Query: 58 EDQSPGANGSHINTEDAVEDEDKRTASI-----------SEDEKEKHDQLLALPPHGSEV 106
E+ S G H T +A E K+ + + KE+ +L A V
Sbjct: 134 ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI-------------------------RCSMSETNNRLFIGNVPKSWTEKEFR 201
K+ GK I R + + N L++ N+ ++ R
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN-LYVKNLDDGIDDERLR 311
Query: 202 KVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLY 234
K G TI K R++GF FV +
Sbjct: 312 KAFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
>gi|357163840|ref|XP_003579863.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Brachypodium distachyon]
Length = 428
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 128/282 (45%), Gaps = 31/282 (10%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+++G L E L P GEV + +++++ +G+++G+ FV F S A +A+
Sbjct: 106 IWVGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRQTGQTEGYGFVEFYSHASADKALQNF 165
Query: 166 CS-------KDFKGKTIRCSMSE------TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVD 212
+ FK SM E +++ +F+G++ T++ ++ V
Sbjct: 166 TGHAMPNTDRPFKLNWASYSMGEKRSEVVSDHSIFVGDLAADVTDEMLMELFASKYRSVK 225
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT-VSWAEPK---- 267
++I D R+RG+ FV + ++ D SR MT N P + A P+
Sbjct: 226 GAKVIIDANT-GRSRGYGFVRFGEDS--DKSR-AMTEMNGVYCSTRPIRIGPATPRRTAG 281
Query: 268 ----STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFG 323
STP HS ++ + +YV L N + +L++ F ++G+V V P GK G
Sbjct: 282 DSGSSTPGHSDGDSTN-RTVYVGGLDPNVSEDELRKSFAKYGDVASVKIPQGK----QCG 336
Query: 324 FIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEG 365
F+ Y R+ A +A++ I Q + ++ R ++K+ G
Sbjct: 337 FVQYVNRTDAEEALQGLNGSVIGKQAVRLSWGRSPSHKQPRG 378
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 128/287 (44%), Gaps = 14/287 (4%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
E E+ +L + + + +++G L +E L ++ PIG+V + + +D + +S G
Sbjct: 46 EPSSEEQGELGGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVTKKSLG 105
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEK 198
+A+V + E ++AIDEL +G+ R S+ + +FI N+ + K
Sbjct: 106 YAYVNYHKFEDGEKAIDELNYSLVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNK 165
Query: 199 EFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT 258
G + + ++ D S+ F FV Y A+ + + + D
Sbjct: 166 ALHDTFSAFG-RILSCKVATDDMGQSK--CFGFVHYETGEAAEAAIENVNGMLLN-DREV 221
Query: 259 PTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG 318
K + +YVKN+ T K+ +ELF +G++T + + G
Sbjct: 222 FVGKHVSKKDRESKFEEMKANYTNIYVKNIDLGFTEKEFEELFAPYGKITSIYLEKDQDG 281
Query: 319 K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
K + FGF++Y E SA+ A++ EI+GQ + V A+ + +RTE
Sbjct: 282 KSKGFGFVNYEEHKSAVDAVEALNDKEINGQKIYVGRAQ-KKRERTE 327
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 159/387 (41%), Gaps = 60/387 (15%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + + D D G+SK F FV + + E A+ AI+ +
Sbjct: 153 IFIKNLHPAIDNKALHDTFSAFGRILSCKVATD-DMGQSKCFGFVHYETGEAAEAAIENV 211
Query: 166 CS------KDFKGKTIRCS--------MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
+ F GK + M +++ N+ +TEKEF ++ G +
Sbjct: 212 NGMLLNDREVFVGKHVSKKDRESKFEEMKANYTNIYVKNIDLGFTEKEFEELFAPYGK-I 270
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+I L KD +++GF FV Y + A + + + +++G V A+ K +
Sbjct: 271 TSIYLEKDQDG--KSKGFGFVNYEEHKSAVDAVEALNDK--EINGQKIYVGRAQKKR--E 324
Query: 272 HSAAAASQVKA-------------LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG 318
+ Q +A L++KNL + +++L+E F+ G +T +G
Sbjct: 325 RTEELKKQYEAIRLEKLSKYQGVNLFIKNLDDQIDSEKLEEEFKPFGTITSAKVMVDDAG 384
Query: 319 K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSG 377
K + FGF+ ++ A KAI + + I+G+ L VALA+ + +R++ A
Sbjct: 385 KSKGFGFVCFSTPEEATKAITEMNQRMINGKPLYVALAQRKDVRRSQLEQQIQARNQMRM 444
Query: 378 LPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYG-RGQMPAG--MHMVPMVLPDGRIG 434
A G F G PM YG +G P G + P P+ ++
Sbjct: 445 QNAAAAGGFPGQ----------------FMPPMYYGQQGFFPPGGRGNAAPFPGPNPQMM 488
Query: 435 YVLQQPGVQMPLPPPRPRRVERGPGGR 461
QPG P PRP GP G+
Sbjct: 489 MRRGQPGQPFPEQWPRP-----GPNGQ 510
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 4/134 (2%)
Query: 51 YDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDEKEKHD--QLLALPPH-GSEVF 107
Y+ S D N IN + ++ +E+ K++++ +L L + G +F
Sbjct: 291 YEEHKSAVDAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLF 350
Query: 108 IGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCS 167
I L E L + +P G + ++ D D+G+SKGF FV F + E A +AI E+
Sbjct: 351 IKNLDDQIDSEKLEEEFKPFGTITSAKVMVD-DAGKSKGFGFVCFSTPEEATKAITEMNQ 409
Query: 168 KDFKGKTIRCSMSE 181
+ GK + ++++
Sbjct: 410 RMINGKPLYVALAQ 423
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 124/273 (45%), Gaps = 19/273 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L +E L ++ IG V + + +D + S G+A+V + + A+RA++
Sbjct: 173 TSLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALE 232
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+L K K R S+ + L FI N+ ++ K G + + +
Sbjct: 233 QLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFG-DILSCK 291
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D S+ G+ FV Y A+ + + + +L+ V P+ D A
Sbjct: 292 VATDEHGASK--GYGFVHYVTGESAEAAIKGVNG--MQLNDKVVFVGIHVPRR--DRQAK 345
Query: 276 ---AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
SQ LY+KNLP TTT++L E+F + G +T + GK R FGF++Y
Sbjct: 346 IDEVRSQFTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENHE 405
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA KA+ + G VL VA A+ +T + E
Sbjct: 406 SASKAVDALHDKDYKGNVLYVARAQKRTERDAE 438
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 93/380 (24%), Positives = 155/380 (40%), Gaps = 53/380 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + + L D G++ + D + G SKG+ FV + + E A+ AI +
Sbjct: 263 IFIKNLDETIDNKALHDTFAAFGDILSCKVATD-EHGASKGYGFVHYVTGESAEAAIKGV 321
Query: 166 CSKDFKGKTIRCSM---------------SETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K + + S+ N L+I N+P T +E +V GP
Sbjct: 322 NGMQLNDKVVFVGIHVPRRDRQAKIDEVRSQFTN-LYIKNLPTETTTEELNEVFGKFGP- 379
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTP 270
+ + + D ++RGF FV Y N+ A + + ++K GN V+ A+ ++
Sbjct: 380 ITSAAVQSDEHG--KHRGFGFVNYENHESASKAVDALHDKDYK--GNVLYVARAQKRTER 435
Query: 271 DHSAAAASQVKA-----------LYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKSG 318
D A + + LYVKNL + ++L+ F G +T V K
Sbjct: 436 DAELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKDEKGT 495
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR----------PQTNKRTEGVYS 368
+ FGF+ ++ A KA+ + + + L V+LA+ Q ++R++
Sbjct: 496 SKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSLAQRKEVRKQQLEAQMSQRSQMRSQ 555
Query: 369 CAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVL 428
A +G+P A YG+ Y + G G M+Y MPAGM P
Sbjct: 556 QIAA---AGIPGAPYGAPPNPMYFGGAAAYPPHGGRG----MMYPPNGMPAGMPPRPRYA 608
Query: 429 PDGRIGYVLQQPGVQMPLPP 448
P G++ + PG P PP
Sbjct: 609 PPGQMA-PMGMPG-GAPYPP 626
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 90/187 (48%), Gaps = 12/187 (6%)
Query: 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239
S+ N L++G + + TE ++ +GP V +I + +D R+ G+A+V Y N A
Sbjct: 169 SQPNTSLYVGELDPTVTEAMLYEIFSMIGP-VASIRVCRD-AVTRRSLGYAYVNYLNAAD 226
Query: 240 ADYSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
A+ + +++ N+ L N + W S D S Q +++KNL E K L
Sbjct: 227 AERALEQL---NYSLIKNKACRIMW----SQRDPSLRKTGQGN-IFIKNLDETIDNKALH 278
Query: 299 ELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357
+ F G++ + G + +GF+HY SA AIK +++ +V+ V + P
Sbjct: 279 DTFAAFGDILSCKVATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVP 338
Query: 358 QTNKRTE 364
+ +++ +
Sbjct: 339 RRDRQAK 345
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
E++K++ L G +++ L + +E L++ P G + ++KD + G SKGF
Sbjct: 444 EQQKYETTLKY--QGVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKD-EKGTSKGFG 500
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181
FV F S + A +A+ E+ K K + S+++
Sbjct: 501 FVCFSSPDEATKAVAEMNGKMLGSKPLYVSLAQ 533
>gi|260944998|ref|XP_002616797.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
gi|238850446|gb|EEQ39910.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
Length = 620
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 102/404 (25%), Positives = 165/404 (40%), Gaps = 50/404 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L D + L D G + + D + G SK F FV + + E A AI+ +
Sbjct: 141 IFIKNLHPDIDNKALHDTFSAFGRILSCKVATD-EHGRSKCFGFVHYETAEAADAAIENV 199
Query: 166 CSKD------FKGKTI----RCS----MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
F GK I R + M +F+ N +TE E + E G +
Sbjct: 200 NGMSLNDREVFVGKHISKKDRVAKFEEMKANFTNVFVKNFGSDFTEAELAAMFEPYGK-I 258
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
++ KD + S+ GF F+ + N+ A + +++ +++G V A+ K
Sbjct: 259 TSLYFEKDSEGKSK--GFGFINFENHDAAVKAVEELNDK--EVNGQKIYVGRAQKKRERI 314
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK- 319
T + Q L+VKNL ++ T++ L+E F+ G +T ++GK
Sbjct: 315 EELKKQYETTRLEKLSKYQGVNLFVKNLDDSLTSEMLEEEFKPFGTITSAKVMVDETGKS 374
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE------------GVY 367
+ FGF+ ++ A KAI + + + G+ L VALA+ + +R++
Sbjct: 375 KGFGFVCFSAPEEATKAITEMNQRMVLGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQN 434
Query: 368 SCAAGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMV 427
+ AAG+ +P YG G G+ G G M+ RGQMP P
Sbjct: 435 AAAAGIPGQFMPPMFYGQQPGFFPGN---GRNNGPFPGPNPQMMMPRGQMPPPQGQWPRA 491
Query: 428 LPDGRIGYVLQQPGVQMPLPPPRPRRVERG--PGGRGASSGGSD 469
P+G+ V P V P R+ +RG P R G D
Sbjct: 492 GPNGQPVPVYGMPPVYNDFNGPNGRQ-QRGYFPNNRNQKGGRRD 534
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 122/266 (45%), Gaps = 21/266 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L +E L ++ P+G+V + + +D + +S G+A+V + E +RA++
Sbjct: 51 ASLYVGELNPSVNEAVLYEIFSPLGQVSSIRVCRDAVTKKSLGYAYVNYHKHEDGERALE 110
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+L G+ R S+ + L FI N+ K G + + +
Sbjct: 111 QLNYSLIDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPDIDNKALHDTFSAFG-RILSCK 169
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D R++ F FV Y AD + + + + N V + S D A
Sbjct: 170 VATDEHG--RSKCFGFVHYETAEAADAAIENVNGMSL----NDREVFVGKHISKKDR-VA 222
Query: 276 AASQVKA----LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAER 330
++KA ++VKN + T +L +F+ +G++T + GK + FGFI++
Sbjct: 223 KFEEMKANFTNVFVKNFGSDFTEAELAAMFEPYGKITSLYFEKDSEGKSKGFGFINFENH 282
Query: 331 SSALKAIKDTEKYEIDGQVLEVALAR 356
+A+KA+++ E++GQ + V A+
Sbjct: 283 DAAVKAVEELNDKEVNGQKIYVGRAQ 308
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +F+ L + E L + +P G + ++ D ++G+SKGF FV F + E A +A
Sbjct: 333 QGVNLFVKNLDDSLTSEMLEEEFKPFGTITSAKVMVD-ETGKSKGFGFVCFSAPEEATKA 391
Query: 162 IDELCSKDFKGKTIRCSMSE 181
I E+ + GK + ++++
Sbjct: 392 ITEMNQRMVLGKPLYVALAQ 411
>gi|425772940|gb|EKV11320.1| Polyadenylate-binding protein [Penicillium digitatum PHI26]
gi|425781989|gb|EKV19920.1| Polyadenylate-binding protein [Penicillium digitatum Pd1]
Length = 736
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 117/273 (42%), Gaps = 13/273 (4%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 42 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 101
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KGK R S+ + L FI N+ + K G +
Sbjct: 102 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFG-NIL 160
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D A S+ GF ++Y A A + K + D K
Sbjct: 161 SCKVAQDEFANSKGYGF---VHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 217
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
+ +Y+KN+ T + + +F+ GE+T + GK R FGF++YA
Sbjct: 218 FEEMKANFTNIYIKNIDLEITDDEFRVMFEAFGEITSATLSHDQDGKSRGFGFVNYANHE 277
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA A+ + + E+ Q L V A+ + + E
Sbjct: 278 SAEAAVAEMNEKEVKTQKLYVGRAQKKHEREEE 310
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 119/293 (40%), Gaps = 50/293 (17%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + ++I + + ++++ R + E GE+ L D+D G+S+GF
Sbjct: 211 KKDRQSKFEEMKANFTNIYIKNIDLEITDDEFRVMFEAFGEITSATLSHDQD-GKSRGFG 269
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVG 208
FV + + E A+ A+ E+ K+ K +L++G K +E
Sbjct: 270 FVNYANHESAEAAVAEMNEKEVK-----------TQKLYVGRAQKKHEREE--------- 309
Query: 209 PGVDTIELIKDPQAPSRNRGFAFV---LYYNNACADYSRQKM----------TSANFKLD 255
EL K +A + + LY N D +K+ TSA D
Sbjct: 310 ------ELRKQYEAARMEKASKYQGVNLYVKNLTDDIDDEKLRDLFTPYGTITSAKVMRD 363
Query: 256 GN----TPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVV 311
TP E K + + + + E T +Q + ++ E
Sbjct: 364 AAERSPTPEAEDKETKGSEEKEVKTEETAEVKTEETTEEKKTEEQGEASEEKKAEKKAF- 422
Query: 312 TPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
GKS + FGF+ ++ A KA+ + + ++ + L VALA+ + +R++
Sbjct: 423 ---GKS--KGFGFVCFSSPDEASKAVTEMNQRMVNAKPLYVALAQRKDVRRSQ 470
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 125/271 (46%), Gaps = 16/271 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S +A+V F+ + A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L F+ N+ KS K + G + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG-NILSCN 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTV-SWAEPKSTPDHSA 274
++ D ++G+ FV + + A+ + +KM L+G V + K
Sbjct: 130 VVCDENG---SKGYGFVHFETHEAAERAIKKMN--GMLLNGRKVFVGQFKSRKEREAELG 184
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSA 333
A A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ + A
Sbjct: 185 ARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 334 LKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + E++G+ + V A+ + ++TE
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 120/278 (43%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+F+ L K + + L D G + +V D++ SKG+ FV F + E A+RAI ++
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKM 158
Query: 166 CSKDFKGKTIRCSMSETNN--------------RLFIGNVPKSWTEKEFRKVIEDVGPGV 211
G+ + ++ ++I N + ++ + + GP +
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
QV LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 42/213 (19%)
Query: 58 EDQSPGANGSHINTEDAVEDEDKRTASI-----------SEDEKEKHDQLLALPPHGSEV 106
E+ S G H T +A E K+ + + KE+ +L A V
Sbjct: 134 ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI-------------------------RCSMSETNNRLFIGNVPKSWTEKEFR 201
K+ GK I R + + N L++ N+ ++ R
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN-LYVKNLDDGIDDERLR 311
Query: 202 KVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLY 234
K G TI K R++GF FV +
Sbjct: 312 KAFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 128/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S +A+V F+ + A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L F+ N+ KS K + G + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG-NILSCN 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + + A+ + +KM L+G V + KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETHEAAERAIKKMNG--MLLNGR--KVFVGQFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 120/278 (43%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+F+ L K + + L D G + +V D++ SKG+ FV F + E A+RAI ++
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKM 158
Query: 166 CSKDFKGKTIRCSMSETNN--------------RLFIGNVPKSWTEKEFRKVIEDVGPGV 211
G+ + ++ ++I N + ++ + + GP +
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
QV LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 42/213 (19%)
Query: 58 EDQSPGANGSHINTEDAVEDEDKRTASI-----------SEDEKEKHDQLLALPPHGSEV 106
E+ S G H T +A E K+ + + KE+ +L A V
Sbjct: 134 ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI-------------------------RCSMSETNNRLFIGNVPKSWTEKEFR 201
K+ GK I R + + N L++ N+ ++ R
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN-LYVKNLDDGIDDERLR 311
Query: 202 KVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLY 234
K G TI K R++GF FV +
Sbjct: 312 KAFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ +R S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEVIKGQPVRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D +RGF FV + + A Q + + N L N V KS + A
Sbjct: 130 VVCDDHG---SRGFGFVHFETHEAA---HQAIATMNGMLL-NDRKVFVGHFKSRREREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERS 331
A A + +YVKNL + + L++LF + G++ V G R FGF+++ +
Sbjct: 183 LGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ D E+ G++L V A+ + ++ E
Sbjct: 243 EAQKAVMDMNGKEVSGRLLYVGRAQKRVERQNE 275
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 120/278 (43%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + +V D D G S+GF FV F + E A +AI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-DHG-SRGFGFVHFETHEAAHQAIATM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ R +E R +++ N+ E+ + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKML 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
++++++D SR GF FV + + A + M ++ G V A+ +
Sbjct: 219 -SVKVMRDDIGHSR--GFGFVNFEKHEEAQKAVMDMNGK--EVSGRLLYVGRAQKRVERQ 273
Query: 272 HSA-----------AAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
+ A Q LYVKNL ++ ++L++ F +G +T KV+T G S
Sbjct: 274 NELKRRFEQMKQDRATRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
+ D +RGF FV + + A +Q + + N L N V KS + A
Sbjct: 130 VACDEHG---SRGFGFVHFETHEAA---QQAINTMNGMLL-NDRKVFVGHFKSRREREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERS 331
A A + +YVKNLP + + L++LF + G++ V SG R FGF+++ +
Sbjct: 183 LGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ E+ G++L A+ + ++ E
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 69 INTEDAVEDEDKRT-ASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPI 127
INT + + D++ + +E+ +L A + +++ LP D E+ L+DL
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQF 214
Query: 128 GEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
G++ V +++D +SG S+ F FV F E A++A+ + K+ G+ +
Sbjct: 215 GKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 123/285 (43%), Gaps = 38/285 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + + D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ R +E R +++ N+P E+ + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPK-ST 269
++++++D SR GF N + +++ + N K + G A+ +
Sbjct: 219 -SVKVMRDNSGHSRCFGFV-----NFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVER 272
Query: 270 PDHSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q+K LYVKNL ++ +L++ F +G +T KV+T G S
Sbjct: 273 QNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR 362
+ FGF+ ++ A KA+ + + + L VALA+ + ++
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERK 375
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 121/270 (44%), Gaps = 14/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L P G + + + +D + S G+A+V F+ A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYVNFQQPADAECALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KG+ IR S+ + +FI N+ +S K G + + +
Sbjct: 71 TMNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D + ++G+ FV + A+ + + M D + K +
Sbjct: 130 VVCDEKG---SKGYGFVHFETQEAANRAIETMNGMLLN-DRKVFVGHFKSRKEREVEFGS 185
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
A + +Y+KN E+ T ++LKE+F G V + G+ R FGF++YA A
Sbjct: 186 KAMKFTNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGFVNYAHHEDAQ 245
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + EI+G++L V A+ + ++ E
Sbjct: 246 KAVNEMNGKEINGKILYVGRAQKRLERQGE 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 124/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI + + + L D G + +V D+ SKG+ FV F ++E A RAI+ +
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDEKG--SKGYGFVHFETQEAANRAIETM 158
Query: 166 CSK----------DFKGKTIR------CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
FK + R +M TN ++I N + +T+++ ++V G
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREVEFGSKAMKFTN--VYIKNFGEDFTDEKLKEVFSAFGR 216
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK-S 268
+ ++ ++KD + R+RGF FV Y ++ A + +M +++G V A+ +
Sbjct: 217 TL-SVRVMKDEKG--RSRGFGFVNYAHHEDAQKAVNEMNGK--EINGKILYVGRAQKRLE 271
Query: 269 TPDHSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG 318
Q+K LYVKNL ++ ++L++ F +G +T S
Sbjct: 272 RQGELKRKFDQIKQDRIQRYQGVNLYVKNLDDSIDDERLRKEFAPYGTITSAKVMTDGSQ 331
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 38.1 bits (87), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +++ L +E LR P G + ++ D +SKGF FV F S E A +A
Sbjct: 292 QGVNLYVKNLDDSIDDERLRKEFAPYGTITSAKVM--TDGSQSKGFGFVCFSSPEEATKA 349
Query: 162 IDELCSKDFKGKTIRCSMSE 181
+ E+ + K + ++++
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
>gi|426391822|ref|XP_004062265.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Gorilla
gorilla gorilla]
gi|164651982|gb|ABY64766.1| ePAB [Homo sapiens]
Length = 330
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
+ D +RGF FV + + A +Q + + N L N V KS + A
Sbjct: 130 VACDEHG---SRGFGFVHFETHEAA---QQAINTMNGML-LNDRKVFVGHFKSRREREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +YVKNLP + + L++LF + G++ V SG R FGF+++ +
Sbjct: 183 LGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ E+ G++L A+ + ++ E
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 69 INTEDAVEDEDKRT-ASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPI 127
INT + + D++ + +E+ +L A + +++ LP D E+ L+DL
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQF 214
Query: 128 GEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
G++ V +++D +SG S+ F FV F E A++A+ + K+ G+ +
Sbjct: 215 GKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
>gi|357162700|ref|XP_003579494.1| PREDICTED: uncharacterized protein LOC100845138 [Brachypodium
distachyon]
Length = 929
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 133/312 (42%), Gaps = 49/312 (15%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G LP L +L P G + + + +G SKG+ FV + A AI+
Sbjct: 204 TNLYVGNLPASVGSHKLIELFLPFGRIVRSKVADECFTGLSKGYGFVKYDDPHSATAAIN 263
Query: 164 ELCSKDFKGKTIRC---------------SMSETNNR---------LFIGNVPKSWTEKE 199
+ + GK + S+SET ++ L++ N+ S T++E
Sbjct: 264 RMNGRLVDGKILEVRVAGVPPSGSNPSIQSVSETYSQPSEEIDMSSLYVRNLSLSMTKEE 323
Query: 200 FRKVIEDVGPGVDTIELIKDPQ--APSRNRGFAFVLYYN-----NACADYSRQKM--TSA 250
+ G +D K P+ A N+G+ FV Y N NA + +
Sbjct: 324 LLQHFLPFGKIIDA----KVPRDYATGLNKGYGFVRYSNSHEAANAIIHLNGHLVEGKKM 379
Query: 251 NFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT-- 308
++ G +P +S + +S D + LYV N+P + TK+L E+F G++T
Sbjct: 380 EVRVSGVSPALSNSAVESHTDARLIKEIDMANLYVCNIPTSIDTKKLIEIFLPFGKITHA 439
Query: 309 KVVTPPGK-SGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVY 367
+V G SGK +GF+ +A+ A +AI + ++G+ L V R G+
Sbjct: 440 RVAAHQGTYSGKGRYGFVKFADSQCAAEAITLMDGALVEGETLVV---------RVAGLS 490
Query: 368 SCAAGVHPSGLP 379
S A+ GLP
Sbjct: 491 SSASSPAVHGLP 502
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 117/305 (38%), Gaps = 57/305 (18%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEV------FEVGLVKDKDSGES----KGFAFVAFR 153
S ++I LP+ + + + L P G++ E LV D + K
Sbjct: 511 SRIYITNLPRSTNADMMVKLFVPFGQISKVVMNLEYSLVYYADVASAVKAIKHMDGYMIG 570
Query: 154 SKEVAKRAIDELCSKDFKGKTIRCSMSETNNRL-----FIGNVPKSWTEKEFRKVIEDVG 208
K + R D C D G T S+ + + F+G +P + + ++ G
Sbjct: 571 GKRLVVRRSDS-CPTDAAGHTSTQSLGKEVKEIDMANVFVGRIPSTVNGDQLVELFRPFG 629
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
V +++G+ + + A + M +++ G+ V A +
Sbjct: 630 QIVQVRVF--------QHQGYGMFRFNDPFSAAAAIDHMN--GYQIGGSALVVRVAGLPN 679
Query: 269 TPDHSAAA-------------ASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTP 313
D SAA + LYV +LP TT++L E+F G++T +VVT
Sbjct: 680 PGDFSAATDDLKLQMPGNEGRQIDMANLYVCHLPLYITTEKLIEIFLPCGQITQARVVTD 739
Query: 314 PGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGV 373
+ FGF+ +A+ SA A+ Y ++G +LEV + AGV
Sbjct: 740 RYTGISKGFGFVRFADTYSAAVALTHMNGYPLEGHILEVRI----------------AGV 783
Query: 374 HPSGL 378
HPS +
Sbjct: 784 HPSDM 788
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 125/269 (46%), Gaps = 12/269 (4%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L + +E L ++ +G V + + +D + S G+A+V F + E ++RA++
Sbjct: 80 TSLYVGELEPNVNEAILFEIFNMVGAVSSIRVCRDTVTRRSLGYAYVNFLNAEDSERALE 139
Query: 164 ELCSKDFKGKTIRCSMSETN---NRLFIGNV-PKSWTEKEFRKVIEDVGPGVDTIELIKD 219
+L +G+ R S+ + R GN+ K+ E K + D I K
Sbjct: 140 QLNYTPIRGRPCRIMWSQRDPGQRRAGQGNIFIKNLDEAIDNKALHDTFAAFGKILSCKV 199
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA---A 276
+ G+ FV Y +N A+ + + + N V S D A A
Sbjct: 200 ASNEHGSLGYGFVHYESNDAAEAAIKHVNGMLL----NDKKVYVGHHISKKDRQAKIEEA 255
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALK 335
+ +YVKNL T ++ ++LF+++G++T + GK R FGF++++E A K
Sbjct: 256 RAHYTNVYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQEGKSRGFGFVNFSEHEQAAK 315
Query: 336 AIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+++ E GQ L + A+ ++ + E
Sbjct: 316 AVEELNDTEFHGQKLFLGRAQKKSEREEE 344
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 125/281 (44%), Gaps = 41/281 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI--- 162
+FI L + + L D G++ + ++ S G+ FV + S + A+ AI
Sbjct: 170 IFIKNLDEAIDNKALHDTFAAFGKILSCKVASNEHG--SLGYGFVHYESNDAAEAAIKHV 227
Query: 163 -------------DELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
+ KD + K TN +++ N+ + T++EF K+ E G
Sbjct: 228 NGMLLNDKKVYVGHHISKKDRQAKIEEARAHYTN--VYVKNLDPAVTQEEFEKLFEKYG- 284
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST 269
+ + + D + ++RGF FV + + A + +++ F G + A+ KS
Sbjct: 285 KITSAAIATDQEG--KSRGFGFVNFSEHEQAAKAVEELNDTEF--HGQKLFLGRAQKKSE 340
Query: 270 PD------HSAAAASQVKA-----LYVKNLPENTTTKQLKELFQRHGEVT--KVV-TPPG 315
+ + AA ++ LY+KNLPE+ ++L+E F G T KV+ TP G
Sbjct: 341 REEELRRAYEAAKNEKLSKYQGVNLYIKNLPEDFDDERLQEEFAPFGTTTSAKVMRTPTG 400
Query: 316 KSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
S R FGF+ Y+ A KA+ + I+ + L VALA+
Sbjct: 401 AS--RGFGFVCYSAPEEANKAVAEMNGKMIENRPLYVALAQ 439
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 76 EDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGL 135
E+E +R +++EK Q G ++I LP+D +E L++ P G +
Sbjct: 342 EEELRRAYEAAKNEKLSKYQ-------GVNLYIKNLPEDFDDERLQEEFAPFGTTTSAKV 394
Query: 136 VKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181
++ +G S+GF FV + + E A +A+ E+ K + + + ++++
Sbjct: 395 MRT-PTGASRGFGFVCYSAPEEANKAVAEMNGKMIENRPLYVALAQ 439
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 120/270 (44%), Gaps = 15/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
S +++G L + +E L DL + +V + + +D+ S G+A+V F + + A A++
Sbjct: 23 SSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAANAME 82
Query: 164 ELCSKDFKGKTIRCSMSET--------NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L GK IR +S + +FI N+ S K ++ GP V + +
Sbjct: 83 LLNFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFASFGP-VLSCK 141
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D S +G+ FV + N A + ++ N L + + A
Sbjct: 142 VAVDNNGQS--KGYGFVQFENEEAAQSAINRL---NGMLINDKEVFVGRFVRHQERIEAT 196
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
+ + +YVKNL E T+ + LK+ F +G +T + +SGK + FGF+++ SA
Sbjct: 197 GSPKFTNVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSPDSAA 256
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A++ + +V V A+ + + E
Sbjct: 257 AAVEKLNGTTFNDKVWYVGRAQRKGEREAE 286
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 152/346 (43%), Gaps = 42/346 (12%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ VFI L + L++ G V + D ++G+SKG+ FV F ++E A+ AI+
Sbjct: 111 ANVFIKNLDTSIDNKALQETFASFGPVLSCKVAVD-NNGQSKGYGFVQFENEEAAQSAIN 169
Query: 164 ELC------SKDFKGKTIR------CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
L + F G+ +R + S +++ N+ ++ ++++ +K + G
Sbjct: 170 RLNGMLINDKEVFVGRFVRHQERIEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGSIT 229
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
I ++KD S+ GF FV + + A + +K+ F + V A+ K +
Sbjct: 230 SAI-VMKDQSGKSK--GFGFVNFQSPDSAAAAVEKLNGTTF--NDKVWYVGRAQRKGERE 284
Query: 272 HSAAA---------ASQVKA--LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-K 319
A ++KA LY+KNL + ++LKELF G +T + G
Sbjct: 285 AELKARFEQERNSRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLS 344
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA--RPQTNKRTEGVYS--CAAGV-- 373
+ GF+ ++ A +A+ I + L VA+A R + R + ++ A G+
Sbjct: 345 KGSGFVAFSTPEEASRALNGMNGKMIGKKPLYVAVAQRREERKARLQAHFTQIQAPGLSP 404
Query: 374 HPSGLP--HAGYGSFA--GTAYGSVSTGLG--VAAGAGLQQPMIYG 413
PSGLP H G A +G + G+ AG G QQ ++ G
Sbjct: 405 MPSGLPGYHPGAPRLAPQQLFFGQGTAGMMPPQPAGYGFQQQLLPG 450
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 87/204 (42%), Gaps = 35/204 (17%)
Query: 60 QSPGANGSHINTEDAVEDEDKRTASISEDEKE-------KHDQLLAL--PPHGSEVFIGG 110
QS G E+A + R + ++KE +H + + P + V++
Sbjct: 149 QSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQERIEATGSPKFTNVYVKN 208
Query: 111 LPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF 170
L + S+EDL+ G + ++KD+ SG+SKGF FV F+S + A A+++L F
Sbjct: 209 LSETTSDEDLKKFFSNYGSITSAIVMKDQ-SGKSKGFGFVNFQSPDSAAAAVEKLNGTTF 267
Query: 171 KGKTIRCSMS----------------ETNNR--------LFIGNVPKSWTEKEFRKVIED 206
K + E N+R L++ N+ +++ +++ +
Sbjct: 268 NDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNLDDKIDDEKLKELFSE 327
Query: 207 VGPGVDTIELIKDPQAPSRNRGFA 230
G + + +++ D Q S+ GF
Sbjct: 328 FG-SITSCKVMLDQQGLSKGSGFV 350
>gi|269859758|ref|XP_002649603.1| poly(A)-binding protein [Enterocytozoon bieneusi H348]
gi|220066966|gb|EED44435.1| poly(A)-binding protein [Enterocytozoon bieneusi H348]
Length = 484
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 130/274 (47%), Gaps = 30/274 (10%)
Query: 80 KRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDK 139
KR A +S D+KE + + +G + + + +L+++ + + ++ K
Sbjct: 8 KRLADVSFDDKE-----------LNVIHVGDISLNTTANELKEVFKGLNVT---NIIMKK 53
Query: 140 DSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNR------LFIGNVPK 193
FAFV F S A+ A+ + GK I ++S+T + +F+ N+P
Sbjct: 54 TLNGQYAFAFVKFDSANAAQEAVQKYNYTMLNGKEILLTISDTQFKYSQSANIFVNNIPT 113
Query: 194 SWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSA-NF 252
+ K+ ++ ++ GP V + ++ + + S+ G+ +V+Y N A ++ +T+ N
Sbjct: 114 DMSAKDLEEIFKNFGP-VLSCKISRTSEGKSK--GYGYVMYKNLKSA---KKAVTNCQNV 167
Query: 253 KLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT 312
K++ N V + P+ + +S A + KN P N T +LK L +++GE+T +
Sbjct: 168 KINENILFVDFYNPQKSARNSENKA--FTNCFCKNFPPNYTEAELKNLLKKYGEITTIYF 225
Query: 313 PPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEI 345
P GK F ++YA SA++AI + +I
Sbjct: 226 PTKSDGKPVGFACVNYAHPESAVRAIDELHNKQI 259
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 137/299 (45%), Gaps = 39/299 (13%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
+ +F+ +P D S +DL ++ + G V + + + G+SKG+ +V +++ + AK+A
Sbjct: 102 QSANIFVNNIPTDMSAKDLEEIFKNFGPVLSCKISRTSE-GKSKGYGYVMYKNLKSAKKA 160
Query: 162 I---------DELCSKDFKG--KTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
+ + + DF K+ R S ++ F N P ++TE E + +++ G
Sbjct: 161 VTNCQNVKINENILFVDFYNPQKSARNSENKAFTNCFCKNFPPNYTEAELKNLLKKYGE- 219
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACA----DYSRQKMTSANFKLDGNTPTVSWAEP 266
+ TI ++ + GFA V Y + A D K N ++ +T EP
Sbjct: 220 ITTIYF--PTKSDGKPVGFACVNYAHPESAVRAIDELHNKQIFNNNQMQKDTKFA--IEP 275
Query: 267 ----------------KSTPDHSAAAASQVK-ALYVKNLPENTTTKQLKELFQRHGEVTK 309
KS +S +++K L+++N+P + + +L E+ ++ G +T
Sbjct: 276 FYIQKNEKKKEREQILKSFYGNSVGFRNKLKRNLFIQNVPTSFSEDELLEILKKFGNITD 335
Query: 310 V-VTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVY 367
+ ++ FG++ Y+ A A++ +++ +DG LE+++ + + + TE Y
Sbjct: 336 FKLKLDTLHPEKQFGYVCYSTIEEAAVALEKSKQVLLDGNQLELSIYKSKYERSTESSY 394
>gi|212275334|ref|NP_001130489.1| uncharacterized protein LOC100191587 [Zea mays]
gi|194689276|gb|ACF78722.1| unknown [Zea mays]
Length = 417
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 127/280 (45%), Gaps = 23/280 (8%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+++G L E L P GEV + +++++ SG S+G+ FV F S A++A+
Sbjct: 95 IWVGDLQYWMDENYLHSCFGPGGEVVNIKVIRNRHSGVSEGYGFVEFYSHVSAEKALQNF 154
Query: 166 CS-------KDFKGKTIRCSMSET------NNRLFIGNVPKSWTEKEFRKVIEDVGPGVD 212
+ FK SM E ++ +F+G++ T++ ++ + V
Sbjct: 155 SGHVMPNTERAFKLNWASYSMGEKRSEVPPDHSIFVGDLAVDVTDEMLLELFSNKYRSVK 214
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNN-----ACADYSRQKMTSANFKLDGNTPTVSWAEPK 267
++I D R+RG+ FV + ++ A + + ++ ++ TP S +
Sbjct: 215 GAKVIIDANT-GRSRGYGFVRFGDDNDKTLAMTEMNGVYCSTRPIRVGLATPRRSQGDSG 273
Query: 268 STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHY 327
S+P + S + +YV L N + +L++ F ++G++ V P GK GF+ +
Sbjct: 274 SSPPRQSDVDSTNRTVYVGGLDPNVSEDELRKAFAKYGDLASVKIPFGK----QCGFVQF 329
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVY 367
R A +A++ I Q + ++ R T+K++ G Y
Sbjct: 330 VNRVDAEEALQGLNGSTIGKQAIRLSWGRSPTSKQSRGDY 369
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 116/273 (42%), Gaps = 13/273 (4%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + +R
Sbjct: 39 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGER 98
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+DEL KGK R S+ + L FI N+ + K G +
Sbjct: 99 ALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 157
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + D K
Sbjct: 158 SCKVAQDEFGVSKGYGF---VHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 214
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
+ +Y+KN+ ++ ++LF++ GE+T GK R FGF++++
Sbjct: 215 FEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHE 274
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA A+++ E+ Q L V A+ + + E
Sbjct: 275 SAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEE 307
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 127/285 (44%), Gaps = 40/285 (14%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + ++I + + +E+ R L E GE+ L +D + G+S+GF
Sbjct: 208 KKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFG 266
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIEDV 207
FV F + E A+ A++E+ K+ + + +L++G K E+E RK E
Sbjct: 267 FVNFSTHESAQAAVEEMNDKEVRSQ-----------KLYVGRAQKKHEREEELRKQYEAA 315
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKM--------TSANFKLDGNTP 259
+ S+ +G LY N D K+ T + K+ +T
Sbjct: 316 -----------RMEKASKYQGVN--LYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTA 362
Query: 260 TVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK 319
V A P+S SA ++ A + ++ ++ ++ E P GKS
Sbjct: 363 PVETATPESETKESANKENEKAA----EGEKEPAAEEKEKEEKKEAEQKPEKKPLGKS-- 416
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ FGF+ ++ A KA+ + + ++G+ L VALA+ + +R++
Sbjct: 417 KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 461
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 124/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KG+ +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN ++ ++L+++F ++G + SGK R FGF+ +
Sbjct: 183 LGARAREFTNVYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTDDSGKSRGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++ E
Sbjct: 243 DAQKAVDEMNGKEMNGKPIYVGRAQKKVERQAE 275
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I D EE LRD+ G + ++ D DSG+S+GF FV+F E A++A+DE+
Sbjct: 194 YIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTD-DSGKSRGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKEMNGKPI 261
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 121/278 (43%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N E++ R V G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGDDMDEEKLRDVFNKYGNAM 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+I ++ D SR GF FV + + A + +M +++G V A+ K
Sbjct: 219 -SIRVMTDDSGKSR--GFGFVSFERHEDAQKAVDEMNGK--EMNGKPIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 AELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 120/275 (43%), Gaps = 17/275 (6%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 48 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 107
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KGK R S+ + L FI N+ + K G +
Sbjct: 108 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 166
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + D K
Sbjct: 167 SCKVAQDEFGNSKGYGF---VHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 223
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT---PPGKSGKRDFGFIHYAE 329
+ +Y+KN+ + T ++ +++F++ GE+T P GKS R FGF++Y+
Sbjct: 224 FDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKS--RGFGFVNYST 281
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA A+ + E+ Q L V A+ + + E
Sbjct: 282 HESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEE 316
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 125/289 (43%), Gaps = 45/289 (15%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+D + K D++ A + + ++I + D +EE+ R + E GE+ L +D + G+S+G
Sbjct: 218 KDRQSKFDEMKA---NFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPE-GKSRG 273
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIE 205
F FV + + E A+ A+DE+ K+ K +L++G K E+E RK E
Sbjct: 274 FGFVNYSTHESAQAAVDEMHDKEVK-----------TQKLYVGRAQKKHEREEELRKQYE 322
Query: 206 DVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKM----------TSANFKLD 255
L K + N LY N D +K+ TSA D
Sbjct: 323 -------AARLEKASKYQGVN------LYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD 369
Query: 256 GNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPG 315
+TP AE TPD S K K E ++ KE + + TK
Sbjct: 370 -STP----AERTETPD-SEKEKEVNKENEKKEDEEKAAEEKPKESDEEKKDETKKSDKKL 423
Query: 316 KSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ FGF+ ++ A KA+ + + ++G+ L VALA+ + +R++
Sbjct: 424 LGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 472
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 127/279 (45%), Gaps = 23/279 (8%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P + + +++G L +E L +L IG V + + +D + S G+A+V + S +
Sbjct: 51 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGE 110
Query: 160 RAIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGV 211
+A++EL KG+ R S+ + L FI N+ + K G +
Sbjct: 111 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 169
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAEPKSTP 270
+ ++ +D S +G+ FV Y + A +Q + N L+ V PK
Sbjct: 170 LSCKVAQDENGSS--KGYGFVHYETDEAA---QQAIKHVNGMLLNEKKVYVGHHIPKKD- 223
Query: 271 DHSAAAASQVKA----LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFI 325
+ ++KA +YVKN+ T + +ELF+RHG+VT + GK R FGF+
Sbjct: 224 --RQSKFEEMKANFTNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKSRGFGFV 281
Query: 326 HYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
++ +A KA+++ ++ GQ L V A+ + + E
Sbjct: 282 NFTTHEAAAKAVEELNNKDLHGQELYVGRAQKKHEREEE 320
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 31/228 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + L D G + + +D ++G SKG+ FV + + E A++AI +
Sbjct: 145 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGSSKGYGFVHYETDEAAQQAIKHV 203
Query: 166 CSKDFKGKTIRC--------------SMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
K + M +++ N+ T+ EFR++ E G V
Sbjct: 204 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNISPEVTDDEFRELFERHG-DV 262
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ + ++ SR GF FV + + A + +++ N L G V A+ K +
Sbjct: 263 TSSSIAREQDGKSR--GFGFVNFTTHEAAAKAVEELN--NKDLHGQELYVGRAQKKHERE 318
Query: 272 H----SAAAASQVKA-------LYVKNLPENTTTKQLKELFQRHGEVT 308
S AA KA LY+KNL ++ +L+ +F G +T
Sbjct: 319 EELRKSYEAARIEKASKYQGVNLYIKNLDDDVDDDKLRIMFAEFGPIT 366
>gi|66800163|ref|XP_629007.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|74996426|sp|Q54BM2.1|PAP1A_DICDI RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein, cytoplasmic 1-A
gi|60462370|gb|EAL60591.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 565
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 115/256 (44%), Gaps = 17/256 (6%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
P S +++G L + SE+ L ++ +G V + + +D ++ S +A+V + + A
Sbjct: 5 FTPISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADA 64
Query: 159 KRAIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPG 210
+RA+D L + +GK R S+ + L FI N+ K K G
Sbjct: 65 ERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFG-N 123
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTP 270
+ + +++ D S +GF FV Y AD + K+ N V KS+
Sbjct: 124 ILSCKVVTDDGNSS--KGFGFVHYETQESADKAIAKVNGMMI----NGQKVFVGPFKSSK 177
Query: 271 DHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAE 329
+ + ++ KNL E+ QLKEL Q++GE+T + GK + FGF ++ E
Sbjct: 178 ERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANF-E 236
Query: 330 RSSALKAIKDTEKYEI 345
+ A K + + E +I
Sbjct: 237 SAEAAKNVVENENGKI 252
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 121/287 (42%), Gaps = 45/287 (15%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D D SKGF FV + ++E A +AI ++
Sbjct: 100 VFIKNLDKGIDHKALYDTFSAFGNILSCKVVTD-DGNSSKGFGFVHYETQESADKAIAKV 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKS----------WTEKEFRKVIEDVGPG----- 210
G+ ++F+G S +T F+ + EDVGP
Sbjct: 159 NGMMINGQ-----------KVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKEL 207
Query: 211 ------VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSW- 263
+ I ++ D + S+ GFA N A+ ++ + + N K+ P +
Sbjct: 208 LQQYGEITNITIMADDKGKSKGFGFA-----NFESAEAAKNVVENENGKIFHGKPIYAGR 262
Query: 264 ----AEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK--VVTPPGKS 317
E ++ H+ Q LY+KN+ ++ +L+E+F + G +T V+ +
Sbjct: 263 AQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKAT 322
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ FGF+ Y A +A+ + I + L VALA+ + +R +
Sbjct: 323 TSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALAQRKDIRRAQ 369
>gi|242073268|ref|XP_002446570.1| hypothetical protein SORBIDRAFT_06g018280 [Sorghum bicolor]
gi|241937753|gb|EES10898.1| hypothetical protein SORBIDRAFT_06g018280 [Sorghum bicolor]
Length = 423
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 131/279 (46%), Gaps = 25/279 (8%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+++G L E L P GEV + +++++ +G+S+G+ FV F S A++A+
Sbjct: 103 IWVGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASAEKALQNF 162
Query: 166 CS-------KDFKGKTIRCSMSE------TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVD 212
+ FK SM E +++ +F+G++ T++ ++ V
Sbjct: 163 TGHVMPNTDRAFKLNWASYSMGEKRSEVASDHSIFVGDLAADVTDEMLLELFSSKYRSVK 222
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKM-----TSANFKLDGNTP-TVSWAEP 266
++I D R+RG+ FV + ++ ++ +M ++ ++ TP S
Sbjct: 223 GAKVIIDANT-GRSRGYGFVRFGDDNDKSHAMSEMNGVYCSTRPIRIGPATPRRSSGDSG 281
Query: 267 KSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIH 326
STP HS +S + +YV L N + +L++ F ++G++ V P GK GF+
Sbjct: 282 SSTPGHSDGDSSN-RTVYVGGLDPNVSEDELRKAFAKYGDLASVKIPLGK----QCGFVQ 336
Query: 327 YAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEG 365
+A R+ A +A++ I Q + ++ R ++K++ G
Sbjct: 337 FASRTDAEEALQGLNGSLIGKQAVRLSWGRSPSHKQSRG 375
>gi|332208761|ref|XP_003253477.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 590
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
+ D +RGF FV + + A +Q + + N L N V KS + A
Sbjct: 130 VACDEHG---SRGFGFVHFETHEAA---QQAINTMNGMLL-NDRKVFVGHFKSRREREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERS 331
A A + +YVKNLP + + L++LF + G++ V SG R FGF+++ +
Sbjct: 183 LGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ E+ G++L A+ + ++ E
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYAGRAQKRMERQNE 275
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 69 INTEDAVEDEDKRT-ASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPI 127
INT + + D++ + +E+ +L A + +++ LP D E+ L+DL
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQF 214
Query: 128 GEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
G++ V +++D +SG S+ F FV F E A++A+ + K+ G+ +
Sbjct: 215 GKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 121/270 (44%), Gaps = 15/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L + ++ L DL +G+V V + +D + S G+ +V + + + A RA+D
Sbjct: 31 TSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 90
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L K +R S + +FI N+ K+ K G + + +
Sbjct: 91 VLNFTPLNNKPLRIMYSHRDPSIRKSGMANIFIKNLDKTIDHKALHDTFSSFG-NILSCK 149
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D A +++G+ FV + + A + K+ N L + + SA
Sbjct: 150 VATD--ASGQSKGYGFVQFDSEEAAQNAIDKL---NGMLINDKQVYVGNFLRKQERDSAL 204
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
+ + +YVKNL E+TT + LK +F+ HG +T V GK + FGF+++ A
Sbjct: 205 SNIKFNNIYVKNLAESTTDEDLKSIFEEHGAITSAVVMRDADGKSKCFGFVNFENVDDAA 264
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA++ + D + V A+ ++ + E
Sbjct: 265 KAVEALNGKKFDDKEWYVGKAQKKSERELE 294
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 89/362 (24%), Positives = 156/362 (43%), Gaps = 49/362 (13%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +FI L K + L D G + + D SG+SKG+ FV F S+E A+ AID
Sbjct: 119 ANIFIKNLDKTIDHKALHDTFSSFGNILSCKVATDA-SGQSKGYGFVQFDSEEAAQNAID 177
Query: 164 ELC------SKDFKGKTIR-----CSMSETN-NRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
+L + + G +R ++S N +++ N+ +S T+++ + + E+ G +
Sbjct: 178 KLNGMLINDKQVYVGNFLRKQERDSALSNIKFNNIYVKNLAESTTDEDLKSIFEEHG-AI 236
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ +++D A +++ F FV + N A + + + F D V A+ KS +
Sbjct: 237 TSAVVMRD--ADGKSKCFGFVNFENVDDAAKAVEALNGKKF--DDKEWYVGKAQKKSERE 292
Query: 272 --------HSAAAASQVKA--LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KR 320
S + + +A LY+KNL ++ ++LKELF G +T SG R
Sbjct: 293 LELKGRFEQSLESVEKYQAVNLYIKNLDDSVNDEKLKELFSDFGTITSCKVMHDPSGISR 352
Query: 321 DFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRT--EGVYSCAAGV----- 373
GF+ ++ A +A+ + + + L VA A+ + +R + +S V
Sbjct: 353 GSGFVAFSTPEEASRALAELNGKMVVSKPLYVAPAQRKEERRARLQAQFSQMRPVAMAPS 412
Query: 374 -------HPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGR--GQMPAGMHMV 424
+P G P G YG + AG G QQ ++ G G P V
Sbjct: 413 VAPRMQMYPPGAPGLGQQFL----YGQGPPAMIPQAGFGYQQQLVPGMRPGGAPMPNFFV 468
Query: 425 PM 426
P+
Sbjct: 469 PL 470
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L +D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KG+ +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIDKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN ++ ++LKE+F ++G V +GK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + +++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTE 275
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 125/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAID++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M + ++G + V A+ K
Sbjct: 219 -SVKVMTDDNG--KSKGFGFVSFERHEDAQKAVDEMNGKD--MNGKSMFVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVEDE-DKRTASISEDEK----------EKHDQLLALPPHGSEV 106
E+ S G H T++A E DK + D K E+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I D ++E L+++ G V ++ D D+G+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
KD GK++
Sbjct: 253 GKDMNGKSM 261
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 118/276 (42%), Gaps = 25/276 (9%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L +A+E L D G V + + +D + S G+A+V F+ E A+RAID
Sbjct: 11 ASLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAID 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KGK IR S+ + +FI N+ K+ K G + +
Sbjct: 71 TMNFDELKGKAIRIMWSQRDPALRKSGVGNIFIKNLDKTIDNKMLYDTFSAFG---NILS 127
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG---NTPTVSWAEPKSTPDH 272
+ ++G+ FV + A A KLDG N V KS +
Sbjct: 128 CKVNVNLAGESKGYGFVHFETEEAA-------VKAIEKLDGMLMNDKKVFVGRFKSRGER 180
Query: 273 SAAA---ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYA 328
A Q +++KNLP +L E+F HG V V ++GK R FGF+ +
Sbjct: 181 VREYGDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFE 240
Query: 329 ERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A K ++ E +G+ + V A+ + ++ E
Sbjct: 241 THECAEKVVEKLHDKEFEGKKIFVGRAQKKAERQAE 276
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 119/280 (42%), Gaps = 35/280 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + V +GESKG+ FV F ++E A +AI++L
Sbjct: 101 IFIKNLDKTIDNKMLYDTFSAFGNILSCK-VNVNLAGESKGYGFVHFETEEAAVKAIEKL 159
Query: 166 ----------CSKDFKGKTIRCS----MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
FK + R ++ +FI N+P W + + +V + G V
Sbjct: 160 DGMLMNDKKVFVGRFKSRGERVREYGDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHG-SV 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS--- 268
++ L D SR F FV + + CA+ +K+ F +G V A+ K+
Sbjct: 219 MSVALATDENGKSRQ--FGFVSFETHECAEKVVEKLHDKEF--EGKKIFVGRAQKKAERQ 274
Query: 269 --------TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
H Q LYVKNL ++ T L+E F +G +T KV+T G
Sbjct: 275 AELKVKFEKLKHERNQRYQGVNLYVKNLDDSITDDILREHFAPYGNITSSKVMTDTDVEG 334
Query: 319 KRD--FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
R FGF+ + A KA+ + I + L VALA+
Sbjct: 335 TRSKGFGFVCFTSAEEATKAVTEMNGRIIASKPLYVALAQ 374
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKD--SGESKGFAFVAFRSKEVAK 159
G +++ L +++ LR+ P G + ++ D D SKGF FV F S E A
Sbjct: 293 QGVNLYVKNLDDSITDDILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEAT 352
Query: 160 RAIDELCSKDFKGKTIRCSMSE 181
+A+ E+ + K + ++++
Sbjct: 353 KAVTEMNGRIIASKPLYVALAQ 374
>gi|119596297|gb|EAW75891.1| hCG2019100, isoform CRA_e [Homo sapiens]
Length = 617
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
+ D +RGF FV + + A +Q + + N L N V KS + A
Sbjct: 130 VACDEHG---SRGFGFVHFETHEAA---QQAINTMNGMLL-NDRKVFVGHFKSRREREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERS 331
A A + +YVKNLP + + L++LF + G++ V SG R FGF+++ +
Sbjct: 183 LGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ E+ G++L A+ + ++ E
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 69 INTEDAVEDEDKRT-ASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPI 127
INT + + D++ + +E+ +L A + +++ LP D E+ L+DL
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQF 214
Query: 128 GEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
G++ V +++D +SG S+ F FV F E A++A+ + K+ G+ +
Sbjct: 215 GKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 120/279 (43%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + + D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ R +E R +++ N+P E+ + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPK-ST 269
++++++D SR GF N + +++ + N K + G A+ +
Sbjct: 219 -SVKVMRDNSGHSRCFGFV-----NFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVER 272
Query: 270 PDHSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q+K LYVKNL ++ +L++ F +G +T KV+T G S
Sbjct: 273 QNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 125/271 (46%), Gaps = 16/271 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S +A+V F+ + A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L F+ N+ KS K + G + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG-NILSCN 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTV-SWAEPKSTPDHSA 274
++ D ++G+ FV + + A+ + +KM L+G V + K
Sbjct: 130 VVCDENG---SKGYGFVHFETHEAAERAIKKMNG--MLLNGRKVFVGQFKSRKEREAELG 184
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSA 333
A A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ + A
Sbjct: 185 ARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVELMTDESGKSKGFGFVSFERHEDA 244
Query: 334 LKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + E++G+ + V A+ + ++TE
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 120/278 (43%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+F+ L K + + L D G + +V D++ SKG+ FV F + E A+RAI ++
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKM 158
Query: 166 CSKDFKGKTIRCSMSETNN--------------RLFIGNVPKSWTEKEFRKVIEDVGPGV 211
G+ + ++ ++I N + ++ + + GP +
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
++EL+ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVELMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
QV LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 86/213 (40%), Gaps = 42/213 (19%)
Query: 58 EDQSPGANGSHINTEDAVEDEDKRTASI-----------SEDEKEKHDQLLALPPHGSEV 106
E+ S G H T +A E K+ + + KE+ +L A V
Sbjct: 134 ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V L+ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVELMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI-------------------------RCSMSETNNRLFIGNVPKSWTEKEFR 201
K+ GK I R + + N L++ N+ ++ R
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN-LYVKNLDDGIDDERLR 311
Query: 202 KVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLY 234
K G TI K R++GF FV +
Sbjct: 312 KAFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 97/367 (26%), Positives = 162/367 (44%), Gaps = 55/367 (14%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +FI L K + L D G + + D SG SKG+ FV F S+E A+ AID
Sbjct: 121 ANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATDA-SGLSKGYGFVQFDSEESAQNAID 179
Query: 164 ELCSKDFKGKTIRC-----------SMSETN-NRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
+L K + ++S+T N +++ N+ +S T++E K + G +
Sbjct: 180 KLNGMLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMKFFGEYG-TI 238
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ +++D A ++R F FV + N A + + + K+D V A+ KS +
Sbjct: 239 TSAVIMRD--ADGKSRCFGFVNFENPDDAAKAVEGLNGK--KVDDKEWYVGKAQKKSERE 294
Query: 272 HS-----------AAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
+A Q LY+KNL + + ++LKE+F +G +T KV+ P G
Sbjct: 295 QELKGRFEQSIKESADKYQGVNLYLKNLDDTISDEKLKEMFAEYGTITSCKVMRDPTGIG 354
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRT--EGVYSCAAGV--- 373
R GF+ ++ A +A+ + I G+ L VALA+ + ++R + +S V
Sbjct: 355 -RGSGFVAFSTPEEASRALGEMNGKMIAGKPLYVALAQRKEDRRARLQAQFSQMRPVAIT 413
Query: 374 ---------HPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGR----GQMPAG 420
+P G P G G ++ + AG G QQ ++ G G MP+
Sbjct: 414 PSVAPRMPLYPPGAPGLGQQFLYGQGPPAM---MPPQAGFGYQQQLVPGMRPGGGPMPS- 469
Query: 421 MHMVPMV 427
VPMV
Sbjct: 470 -FFVPMV 475
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 121/270 (44%), Gaps = 15/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L ++ ++ L DL + +V V + +D + S G+ +V F + + A RA+D
Sbjct: 33 TSLYVGDLEQNVNDAQLYDLFNQVVQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALD 92
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
L + IR S + L FI N+ K+ K G + + +
Sbjct: 93 VLNFTPLNNRPIRIMYSHRDPSLRKSGTANIFIKNLDKAIDHKALHDTFSSFG-LILSCK 151
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
+ D A ++G+ FV + + A + K+ N L + + +A
Sbjct: 152 IATD--ASGLSKGYGFVQFDSEESAQNAIDKL---NGMLINDKQVYVGHFLRKQDRENAL 206
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
+ ++ +YVKNL E+TT ++L + F +G +T V GK R FGF+++ A
Sbjct: 207 SKTKFNNVYVKNLSESTTDEELMKFFGEYGTITSAVIMRDADGKSRCFGFVNFENPDDAA 266
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA++ ++D + V A+ ++ + E
Sbjct: 267 KAVEGLNGKKVDDKEWYVGKAQKKSEREQE 296
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +++ L S+E L+++ G + +++D +G +G FVAF + E A RA
Sbjct: 313 QGVNLYLKNLDDTISDEKLKEMFAEYGTITSCKVMRDP-TGIGRGSGFVAFSTPEEASRA 371
Query: 162 IDELCSKDFKGKTIRCSMSE 181
+ E+ K GK + ++++
Sbjct: 372 LGEMNGKMIAGKPLYVALAQ 391
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 122/274 (44%), Gaps = 14/274 (5%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KG+ R S+ + L FI N+ + K G +
Sbjct: 112 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 170
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + D K
Sbjct: 171 SCKVAQDEFGNSKGYGF---VHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSK 227
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGK-RDFGFIHYAER 330
+ +YVKN+ ++TT ++ ++LF++ GE+T + +SGK R FGF+++
Sbjct: 228 FEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSH 287
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A A++ + GQ L V A+ + + E
Sbjct: 288 DNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEE 321
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 153/376 (40%), Gaps = 74/376 (19%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + V++ + +D +EE+ RDL E GE+ L +D +SG+S+GF
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFG 280
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIEDV 207
FV F S + A A++ L KDFKG+ +L++G K E+E RK E
Sbjct: 281 FVNFTSHDNAAAAVEALNDKDFKGQ-----------KLYVGRAQKKHEREEELRKQYE-- 327
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKM----------TSANFKLDGN 257
IE Q + LY N D +K+ TSA D
Sbjct: 328 ---AARIEKASKYQGVN--------LYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFA 376
Query: 258 TPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS 317
+ S +E ++ D + + +N K KE + P GKS
Sbjct: 377 PESTSDSEKEAKKDSKEPETKEEEP--KDEAGDNAENKDNKE--NKAESKKSEKKPLGKS 432
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSG 377
+ FGF+ ++ A KA+ + + + G+ L VALA+ + +R++ S A
Sbjct: 433 --KGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQLEASIQA------ 484
Query: 378 LPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMI-----YGRGQMPAGMHMVPMVLPDGR 432
+ AA AG+ QP + YG GQ +P+ R
Sbjct: 485 --------------RNTIRQQQAAAAAGMPQPFMQPAVFYGPGQQ--------NFIPNQR 522
Query: 433 IGYVLQQPGVQMPLPP 448
G QQPG+ +P P
Sbjct: 523 GGMPFQQPGMVIPGMP 538
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 122/274 (44%), Gaps = 14/274 (5%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KG+ R S+ + L FI N+ + K G +
Sbjct: 112 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 170
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + D K
Sbjct: 171 SCKVAQDEFGNSKGYGF---VHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSK 227
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGK-RDFGFIHYAER 330
+ +YVKN+ ++TT ++ ++LF++ GE+T + +SGK R FGF+++
Sbjct: 228 FEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSH 287
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A A++ + GQ L V A+ + + E
Sbjct: 288 DNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEE 321
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 153/376 (40%), Gaps = 74/376 (19%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + V++ + +D +EE+ RDL E GE+ L +D +SG+S+GF
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFG 280
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIEDV 207
FV F S + A A++ L KDFKG+ +L++G K E+E RK E
Sbjct: 281 FVNFTSHDNAAAAVEALNDKDFKGQ-----------KLYVGRAQKKHEREEELRKQYE-- 327
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKM----------TSANFKLDGN 257
IE Q + LY N D +K+ TSA D
Sbjct: 328 ---AARIEKASKYQGVN--------LYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFA 376
Query: 258 TPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS 317
+ S +E ++ D + + +N K KE + P GKS
Sbjct: 377 PESTSDSEKEAKKDSKEPETKEEEP--KDEAGDNAENKDNKE--NKAESKKSEKKPLGKS 432
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSG 377
+ FGF+ ++ A KA+ + + + G+ L VALA+ + +R++ S A
Sbjct: 433 --KGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQLEASIQA------ 484
Query: 378 LPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMI-----YGRGQMPAGMHMVPMVLPDGR 432
+ AA AG+ QP + YG GQ +P+ R
Sbjct: 485 --------------RNTIRQQQAAAAAGMPQPFMQPAVFYGPGQQ--------NFIPNQR 522
Query: 433 IGYVLQQPGVQMPLPP 448
G QQPG+ +P P
Sbjct: 523 GGMPFQQPGMVIPGMP 538
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 122/274 (44%), Gaps = 14/274 (5%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KG+ R S+ + L FI N+ + K G +
Sbjct: 112 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 170
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + D K
Sbjct: 171 SCKVAQDEFGNSKGYGF---VHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSK 227
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGK-RDFGFIHYAER 330
+ +YVKN+ ++TT ++ ++LF++ GE+T + +SGK R FGF+++
Sbjct: 228 FEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSH 287
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A A++ + GQ L V A+ + + E
Sbjct: 288 DNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEE 321
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 153/376 (40%), Gaps = 74/376 (19%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + V++ + +D +EE+ RDL E GE+ L +D +SG+S+GF
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFG 280
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIEDV 207
FV F S + A A++ L KDFKG+ +L++G K E+E RK E
Sbjct: 281 FVNFTSHDNAAAAVEALNDKDFKGQ-----------KLYVGRAQKKHEREEELRKQYE-- 327
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKM----------TSANFKLDGN 257
IE Q + LY N D +K+ TSA D
Sbjct: 328 ---AARIEKASKYQGVN--------LYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFA 376
Query: 258 TPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS 317
+ S +E ++ D + + +N K KE + P GKS
Sbjct: 377 PESTSDSEKEAKKDSKEPETKEEEP--KDEAGDNAENKDNKE--NKAESKKSEKKPLGKS 432
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSG 377
+ FGF+ ++ A KA+ + + + G+ L VALA+ + +R++ S A
Sbjct: 433 --KGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQLEASIQA------ 484
Query: 378 LPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMI-----YGRGQMPAGMHMVPMVLPDGR 432
+ AA AG+ QP + YG GQ +P+ R
Sbjct: 485 --------------RNTIRQQQAAAAAGMPQPFMQPAVFYGPGQQ--------NFIPNQR 522
Query: 433 IGYVLQQPGVQMPLPP 448
G QQPG+ +P P
Sbjct: 523 GGMPFQQPGMVIPGMP 538
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 125/278 (44%), Gaps = 17/278 (6%)
Query: 97 LALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
+A P + +++G L S+ L +L G+V V + +D S S G+A+V F +
Sbjct: 33 VAQPLPTTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPL 92
Query: 157 VAKRAIDELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVG 208
A RA++ L K IR S + +FI N+ K K + G
Sbjct: 93 DAARALEVLNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKMIDNKSLHETFSSFG 152
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT-VSWAEPK 267
+ + ++ D S +GF FV Y A + + S N L + P V K
Sbjct: 153 -TILSCKVAMDEGGQS--KGFGFVQYEKEEAA---QNAIKSLNGMLINDKPVFVGPFLRK 206
Query: 268 STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIH 326
DHS ++ ++VKNL E+TT + L ++F +G +T V G GK R FGFI+
Sbjct: 207 QERDHS-FDKTKFNNVFVKNLSESTTKEDLLKIFGEYGNITSAVVMIGMDGKSRCFGFIN 265
Query: 327 YAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ +A +A+++ +I+ + V A+ ++ + E
Sbjct: 266 FENPDAASRAVQELNGKKINDKEWYVGRAQKKSEREME 303
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 126/283 (44%), Gaps = 30/283 (10%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +FI L K + L + G + + D + G+SKGF FV + +E A+ AI
Sbjct: 128 ANIFIKNLDKMIDNKSLHETFSSFGTILSCKVAMD-EGGQSKGFGFVQYEKEEAAQNAIK 186
Query: 164 ELCSK------DFKGKTIR-----CSMSETN-NRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
L F G +R S +T N +F+ N+ +S T+++ K+ + G
Sbjct: 187 SLNGMLINDKPVFVGPFLRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGNIT 246
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ +I ++R F F+ + N A + Q++ K++ V A+ KS +
Sbjct: 247 SAVVMIG---MDGKSRCFGFINFENPDAASRAVQELNGK--KINDKEWYVGRAQKKSERE 301
Query: 272 HS-----------AAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-K 319
AA Q LY+KNL ++ QL+ELF G++T ++G
Sbjct: 302 MELKRRFEQILKDAADKYQGLNLYLKNLDDSIGDDQLRELFSNFGKITSCKVMRDQNGLS 361
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR 362
+ GF+ ++ R A +A+ + I G+ L VA A+ + +++
Sbjct: 362 KGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRK 404
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 65 NGSHINTEDAVEDEDKRTASISEDEKEKHDQLL---ALPPHGSEVFIGGLPKDASEEDLR 121
NG IN ++ ++ + + K + +Q+L A G +++ L ++ LR
Sbjct: 280 NGKKINDKEWYVGRAQKKSEREMELKRRFEQILKDAADKYQGLNLYLKNLDDSIGDDQLR 339
Query: 122 DLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181
+L G++ +++D++ G SKG FVAF ++E A +A+ E+ K GK + + ++
Sbjct: 340 ELFSNFGKITSCKVMRDQN-GLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQ 398
>gi|255556436|ref|XP_002519252.1| Flowering time control protein FCA, putative [Ricinus communis]
gi|223541567|gb|EEF43116.1| Flowering time control protein FCA, putative [Ricinus communis]
Length = 811
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 17/177 (9%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+++F+G +P+ ASEED+R L E G V EV L+KDK +G+ +G FV + + E A RAI
Sbjct: 161 AKLFVGSVPRTASEEDIRPLFEQHGNVIEVALIKDKRTGQQQGCCFVKYATSEEADRAIR 220
Query: 164 ELCSKDFKGKTI-----------RCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVD 212
L ++ I R + +LF+G++ K TEKE ++ G V+
Sbjct: 221 ALHNQHTLPGGIGPIQVRFADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYG-HVE 279
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG-NTP-TVSWAEPK 267
+ L++D ++RG FV Y + A + + +K+ G + P TV +A+PK
Sbjct: 280 DVYLMRDEM--KQSRGCGFVKYSSREMALAAINALNGI-YKMRGCDQPLTVRFADPK 333
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 90/179 (50%), Gaps = 12/179 (6%)
Query: 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSR 244
+LF+G+VP++ +E++ R + E G V + LIKD + + +G FV Y + AD +
Sbjct: 162 KLFVGSVPRTASEEDIRPLFEQHG-NVIEVALIKDKRT-GQQQGCCFVKYATSEEADRAI 219
Query: 245 QKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQR 303
+ + + + G P V +A+ + A + K L+V +L + T K+++E+F
Sbjct: 220 RALHNQHTLPGGIGPIQVRFADG----ERERLGAVEYK-LFVGSLNKQATEKEVEEIFSP 274
Query: 304 HGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEK-YEIDG--QVLEVALARPQ 358
+G V V + + R GF+ Y+ R AL AI Y++ G Q L V A P+
Sbjct: 275 YGHVEDVYLMRDEMKQSRGCGFVKYSSREMALAAINALNGIYKMRGCDQPLTVRFADPK 333
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 122/274 (44%), Gaps = 20/274 (7%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSK---E 156
P S +++G L KD +E L +L +G V + + +D + S G+A+V + S +
Sbjct: 17 PLTNSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQ 76
Query: 157 VAKRAIDELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVG 208
A+RA++ L GK +R S + +FI N+ KS K G
Sbjct: 77 AAERAMETLNYHVLNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKSIDAKALHDTFSAFG 136
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
+ + ++ D S +G+ FV + + A AD + Q + +++G V + ++
Sbjct: 137 K-ILSCKVATDANGVS--KGYGFVHFEDQAAADRAIQTVNQK--EIEGKIVYVGPFQKRA 191
Query: 269 TPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGKRDFGFIHY 327
+ V +VKNLP +L ++ GEVT VV K + FGFI++
Sbjct: 192 DRPQGKDVYTNV---FVKNLPAELGDDELSKMATEFGEVTSAVVMKDEKGSSKGFGFINF 248
Query: 328 AERSSALKAIKDTEKYEIDGQVLEVALARPQTNK 361
+ A K ++ EI G+VL A+ +T +
Sbjct: 249 KDAECAAKCVEALNDKEIGGKVLYAGRAQKKTER 282
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 121/283 (42%), Gaps = 32/283 (11%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G++ + D + G SKG+ FV F + A RAI +
Sbjct: 114 IFIKNLDKSIDAKALHDTFSAFGKILSCKVATDAN-GVSKGYGFVHFEDQAAADRAIQTV 172
Query: 166 CSKDFKGKTI----------RCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
K+ +GK + R + +F+ N+P + E K+ + G V +
Sbjct: 173 NQKEIEGKIVYVGPFQKRADRPQGKDVYTNVFVKNLPAELGDDELSKMATEFGE-VTSAV 231
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++KD + S+ GF F+ + + CA + + ++ G A+ K+ + A
Sbjct: 232 VMKDEKGSSK--GFGFINFKDAECAAKCVEALNDK--EIGGKVLYAGRAQKKT--EREAM 285
Query: 276 AASQVKA-------------LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RD 321
+V+ LYVKNL + L++LF G +T SGK +
Sbjct: 286 LRQKVEESKQERYLKYQGMNLYVKNLADEVDDDALRDLFTSCGTITSCKVMKDTSGKSKG 345
Query: 322 FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
FGF+ + A +A+ + + G+ L VALA+ + +R +
Sbjct: 346 FGFVCFTSHDEATRAVTEMNGKMVKGKPLYVALAQRKDVRRAQ 388
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 76 EDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGL 135
E E + E ++E++ L G +++ L + ++ LRDL G + +
Sbjct: 281 EREAMLRQKVEESKQERY-----LKYQGMNLYVKNLADEVDDDALRDLFTSCGTITSCKV 335
Query: 136 VKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181
+KD SG+SKGF FV F S + A RA+ E+ K KGK + ++++
Sbjct: 336 MKDT-SGKSKGFGFVCFTSHDEATRAVTEMNGKMVKGKPLYVALAQ 380
>gi|7020334|dbj|BAA91086.1| unnamed protein product [Homo sapiens]
Length = 431
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 18/162 (11%)
Query: 200 FRKVIEDVGPGVDTIELIKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGN 257
+KV E V +++I P A ++NRGFAFV Y ++ A +R+K+ +L G+
Sbjct: 1 MKKVTEGV------VDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGH 54
Query: 258 TPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPG 315
V WAEP+ D S VK LYV+NL +T+ + +++ F + G V +V
Sbjct: 55 GIAVDWAEPEVEVDED--TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV----- 107
Query: 316 KSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357
RD+ F+H++ R A++A+K +DG +EV LA+P
Sbjct: 108 -KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 148
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 123/278 (44%), Gaps = 21/278 (7%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P + +++G L +E L ++ IG V + + +D + S G+A+V F + +
Sbjct: 35 PSPSASLYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGE 94
Query: 160 RAIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGV 211
RA++ L KGK R S+ + L FI N+ S K G +
Sbjct: 95 RALESLNYTLIKGKPCRIMWSQRDPSLRKTGSGNVFIKNLDTSIDNKALHDTFSAFG-NI 153
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ ++ D S +G+ FV Y AD + + + L+ V P+
Sbjct: 154 LSCKIALDESGNS--KGYGFVHYETEEAADNAIKHVDG--MLLNDKKVYVGRHIPRK--- 206
Query: 272 HSAAAASQVKA----LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIH 326
A Q++A +YVKNL E+ +Q KE+F + G +T + + GK + FGFI+
Sbjct: 207 ERQAKIEQIRAKFTNVYVKNLDESINDEQFKEMFSKFGPITSALVQTDEEGKSKGFGFIN 266
Query: 327 YAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ A KA+ + E +G+ L VA A+ +T + E
Sbjct: 267 FENYEDAHKAVDTLNETEHNGKTLYVARAQKKTEREEE 304
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 125/287 (43%), Gaps = 36/287 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE- 164
VFI L + L D G + + D +SG SKG+ FV + ++E A AI
Sbjct: 129 VFIKNLDTSIDNKALHDTFSAFGNILSCKIALD-ESGNSKGYGFVHYETEEAADNAIKHV 187
Query: 165 ---------------LCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
+ K+ + K + TN +++ N+ +S +++F+++ GP
Sbjct: 188 DGMLLNDKKVYVGRHIPRKERQAKIEQIRAKFTN--VYVKNLDESINDEQFKEMFSKFGP 245
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST 269
T L++ + +++GF F+ + N A + + +G T V+ A+ K+
Sbjct: 246 --ITSALVQTDEE-GKSKGFGFINFENYEDAHKAVDTLNETEH--NGKTLYVARAQKKTE 300
Query: 270 PDHSA-----------AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV-VTPPGKS 317
+ A Q LY+KNL ++ ++L++ F +G +T V K
Sbjct: 301 REEELRKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDEKLRQEFSVYGVITSAKVMCDEKG 360
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ FGF+ ++ A KA+ + I + + VALA+ + +R++
Sbjct: 361 TSKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIYVALAQRKEVRRSQ 407
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 91/203 (44%), Gaps = 32/203 (15%)
Query: 90 KEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAF 149
KE+ ++ + + V++ L + ++E +++ G + LV+ + G+SKGF F
Sbjct: 206 KERQAKIEQIRAKFTNVYVKNLDESINDEQFKEMFSKFGPITS-ALVQTDEEGKSKGFGF 264
Query: 150 VAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNN------------------------R 185
+ F + E A +A+D L + GKT+ + ++
Sbjct: 265 INFENYEDAHKAVDTLNETEHNGKTLYVARAQKKTEREEELRKQYEQAKLEKLAKYQGVN 324
Query: 186 LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQ 245
L+I N+ +++ R+ G + + +++ D + S +GF FV + + D + +
Sbjct: 325 LYIKNLDDDIDDEKLRQEFSVYGV-ITSAKVMCDEKGTS--KGFGFVCF---SSPDEATK 378
Query: 246 KMTSANFKLDGNTPT-VSWAEPK 267
+T N ++ G+ P V+ A+ K
Sbjct: 379 AVTEMNGRMIGSKPIYVALAQRK 401
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 7/154 (4%)
Query: 29 QLDDDGEVGRDGNVK-QNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISE 87
Q D++G+ G + +N ED +T E + NG + A + ++ +
Sbjct: 252 QTDEEGKSKGFGFINFENYEDAHKAVDTLNETEH---NGKTLYVARAQKKTEREEELRKQ 308
Query: 88 DEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGF 147
E+ K ++L G ++I L D +E LR G + ++ D + G SKGF
Sbjct: 309 YEQAKLEKLAKY--QGVNLYIKNLDDDIDDEKLRQEFSVYGVITSAKVMCD-EKGTSKGF 365
Query: 148 AFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181
FV F S + A +A+ E+ + K I ++++
Sbjct: 366 GFVCFSSPDEATKAVTEMNGRMIGSKPIYVALAQ 399
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 122/269 (45%), Gaps = 24/269 (8%)
Query: 108 IGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCS 167
I LPK +++D P G + + + +D + S G+A+V F+ A+RA+D +
Sbjct: 6 IQTLPKREAQQDF----SPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNF 61
Query: 168 KDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKD 219
KG+ +R S+ + L FI N+ KS K G + + +++ D
Sbjct: 62 DVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCD 120
Query: 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA---AA 276
++G+ FV + + A+ + +KM N V KS + A A
Sbjct: 121 ENG---SKGYGFVHFETHEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAELGAR 173
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALK 335
A + +Y+KN E+ ++LKELF ++G + SGK + FGF+ + A K
Sbjct: 174 AREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQK 233
Query: 336 AIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+ D E++G+ + V A+ + ++ E
Sbjct: 234 AVDDMNGKELNGRQVYVGRAQKKGERQNE 262
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 125/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F + E A+RAI+++
Sbjct: 88 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKM 145
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + +++ +++ GP +
Sbjct: 146 NGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPAL 205
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+I ++ D S+ GF FV + + A + M +L+G V A+ K
Sbjct: 206 -SIRVMTDDSGKSK--GFGFVSFERHEDAQKAVDDMNGK--ELNGRQVYVGRAQKKGERQ 260
Query: 272 HSAAAA-SQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
+ Q+K LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 261 NELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRS- 319
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 320 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 356
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 85/212 (40%), Gaps = 40/212 (18%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T +A E ++ K + KE+ +L A + V
Sbjct: 121 ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNV 180
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L++L G + ++ D DSG+SKGF FV+F E A++A+D++
Sbjct: 181 YIKNFGEDMDDEKLKELFSKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQKAVDDMN 239
Query: 167 SKDFKGKTIRCSMSETNN------------------------RLFIGNVPKSWTEKEFRK 202
K+ G+ + ++ L++ N+ ++ RK
Sbjct: 240 GKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRK 299
Query: 203 VIEDVGPGVDTIELIKDPQAPSRNRGFAFVLY 234
G TI K R++GF FV +
Sbjct: 300 EFSPFG----TITSAKVMMEGGRSKGFGFVCF 327
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 116/273 (42%), Gaps = 13/273 (4%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + +R
Sbjct: 39 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGER 98
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+DEL KGK R S+ + L FI N+ + K G +
Sbjct: 99 ALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 157
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + D K
Sbjct: 158 SCKVAQDEFGVSKGYGF---VHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 214
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
+ +Y+KN+ ++ ++LF++ GE+T GK R FGF++++
Sbjct: 215 FEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHE 274
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA A+++ E+ Q L V A+ + + E
Sbjct: 275 SAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEE 307
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 127/285 (44%), Gaps = 40/285 (14%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + ++I + + +E+ R L E GE+ L +D + G+S+GF
Sbjct: 208 KKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFG 266
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIEDV 207
FV F + E A+ A++E+ K+ + + +L++G K E+E RK E
Sbjct: 267 FVNFSTHESAQAAVEEMNDKEVRSQ-----------KLYVGRAQKKHEREEELRKQYEAA 315
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKM--------TSANFKLDGNTP 259
+ S+ +G LY N D K+ T + K+ +T
Sbjct: 316 -----------RMEKASKYQGVN--LYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTA 362
Query: 260 TVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK 319
V A P+S SA ++ A + ++ ++ ++ E P GKS
Sbjct: 363 PVETATPESETKESANKENEKAA----EGEKEPAAEEKEKEEEKEAEQKPEKKPLGKS-- 416
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ FGF+ ++ A KA+ + + ++G+ L VALA+ + +R++
Sbjct: 417 KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 461
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,686,607,451
Number of Sequences: 23463169
Number of extensions: 421539560
Number of successful extensions: 2391302
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 17836
Number of HSP's successfully gapped in prelim test: 15582
Number of HSP's that attempted gapping in prelim test: 2044687
Number of HSP's gapped (non-prelim): 212699
length of query: 479
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 333
effective length of database: 8,933,572,693
effective search space: 2974879706769
effective search space used: 2974879706769
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 79 (35.0 bits)