BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011718
(479 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 245
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 246 KVKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 299
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 300 EMNGKDLEGENIEIVFAKPPDQKRKE 325
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+E+F+G +P+D E++L L E G ++++ L+ D +G ++G+AFV F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ + + + GK I +S NNRLF+G++PKS T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-- 335
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 336 KVKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAME 389
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ +++G+ +E+ A+P KR E
Sbjct: 390 EMNGKDLEGENIEIVFAKPPDQKRKE 415
>sp|Q5R9H4|A1CF_PONAB APOBEC1 complementation factor OS=Pongo abelii GN=A1CF PE=2 SV=1
Length = 587
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 192/387 (49%), Gaps = 45/387 (11%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSFAGTAYG 392
A++A+K +DG +EV LA+P +K + Y+ G + L Y G Y
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGTML-QGEYTYSLGQVYD 336
Query: 393 SVSTGLGVAAGAGLQQPMIYGRGQMPAGMHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPR 452
+T LG P+ Y P +P L P + L R
Sbjct: 337 PTTTYLGA--------PVFYA----PQAYAAIPS----------LHFPATKGHL---SNR 371
Query: 453 RVERGPGGRGASSGGSDGSSGRRYRPY 479
+ R P RGA+ G G GR Y Y
Sbjct: 372 AIIRAPSVRGAA--GVRGLGGRGYLAY 396
>sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR
PE=1 SV=1
Length = 633
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 9/266 (3%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G+EVF+G +P+D E++L L E G ++++ L+ D SG+++G+AF+ F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
A+ S + + GK + +S NNRLF+G++PK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 219 DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAAS 278
P +NRGF F+ Y ++ A +R+++ S K+ GN TV WA+P PD A
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-- 338
Query: 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
+VK L+V+NL T + L++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 339 DTEKYEIDGQVLEVALARPQTNKRTE 364
+ EI+G+ +E+ LA+P KR E
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKE 418
>sp|Q9NQ94|A1CF_HUMAN APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1
Length = 594
Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 153/265 (57%), Gaps = 16/265 (6%)
Query: 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV 157
A P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVE 108
Query: 158 AKRAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIEL 216
AK AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDV 166
Query: 217 IKDPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
I P A ++NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D
Sbjct: 167 IVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDED- 225
Query: 275 AAASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSS 332
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R
Sbjct: 226 -TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRED 278
Query: 333 ALKAIKDTEKYEIDGQVLEVALARP 357
A++A+K +DG +EV LA+P
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLAKP 303
>sp|Q08BH5|RBM46_DANRE Probable RNA-binding protein 46 OS=Danio rerio GN=rbm46 PE=2 SV=1
Length = 510
Score = 151 bits (382), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 106/288 (36%), Positives = 162/288 (56%), Gaps = 24/288 (8%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+G +P+D E++L + E G ++E L+ + SGE++G+AFV + ++E A+RAI
Sbjct: 46 EVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMMEF-SGENRGYAFVMYTTREKAQRAIQL 104
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
L + + + GK I +S N RLFIG++PK ++E ++ + V GV +++I P A
Sbjct: 105 LDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGV--MDVIVYPSAV 162
Query: 224 SR--NRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
R NRGFAFV Y ++ A +R+K+ F+L G+T V WAEP+ D +V+
Sbjct: 163 DRMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELDEE--TMQRVR 220
Query: 282 ALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL +TT + L+ F + G V +V D+ FIH+ R AL A++
Sbjct: 221 VLYVRNLMLSTTEETLRSEFSQLKPGSVERV------KKLTDYAFIHFYNREDALTALES 274
Query: 340 TEKYEIDGQVLEVALARPQT---NKRTEGVYSCAAGVHPSGLPHAGYG 384
IDG +EV LA+P + NKR G +C GV +G GYG
Sbjct: 275 MNGKVIDGSPIEVTLAKPASKDGNKRF-GPRNCHNGVTAAG----GYG 317
>sp|Q91WT8|RBM47_MOUSE RNA-binding protein 47 OS=Mus musculus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 148 bits (374), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMQTVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT + +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>sp|Q66H68|RBM47_RAT RNA-binding protein 47 OS=Rattus norvegicus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 139/258 (53%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMQTVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT + +K F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEETIKRSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>sp|Q5R5P4|RBM47_PONAB RNA-binding protein 47 OS=Pongo abelii GN=RBM47 PE=2 SV=2
Length = 593
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>sp|A0AV96|RBM47_HUMAN RNA-binding protein 47 OS=Homo sapiens GN=RBM47 PE=1 SV=2
Length = 593
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 246
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>sp|Q9XSR3|RBM47_CANFA RNA-binding protein 47 OS=Canis familiaris GN=RBM47 PE=2 SV=1
Length = 592
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 140/258 (54%), Gaps = 12/258 (4%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G EVF+G +P+D E++L + E +G ++E+ L+ D D G+++G+AFV + K AKRA+
Sbjct: 72 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVTYCHKGEAKRAV 130
Query: 163 DELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ 221
EL + + + G+ + S N RLFIG +PK +E + I V GV + +
Sbjct: 131 RELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 190
Query: 222 APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
+NRGFAFV Y ++ A +R+K+ +L G+ V WAEP+ D VK
Sbjct: 191 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED--VMETVK 248
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL TT +K+ F + G V +V RD+ F+H+A R A+ A+
Sbjct: 249 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVLAMNS 302
Query: 340 TEKYEIDGQVLEVALARP 357
E++G LEV LA+P
Sbjct: 303 LNGTELEGSCLEVTLAKP 320
>sp|Q5YD48|A1CF_MOUSE APOBEC1 complementation factor OS=Mus musculus GN=A1cf PE=2 SV=2
Length = 595
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 153/263 (58%), Gaps = 16/263 (6%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G E+FIG LP+D E++L LCE IG+++E+ L+ D + G ++G+AFV F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDVIV 168
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+++ +L G+ V WAEP+ D
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDED--T 226
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R A+
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
+A+K +DG +EV LA+P
Sbjct: 281 EAMKALNGKVLDGSPIEVTLAKP 303
>sp|Q923K9|A1CF_RAT APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1
SV=1
Length = 594
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 153/263 (58%), Gaps = 16/263 (6%)
Query: 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAK 159
P G E+FIG LP+D E++L LCE IG+++E+ ++ D + G ++G+AFV F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 160 RAIDELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK 218
AI +L + + + G+ + S N RLF+G +PK+ +E ++ V GV +++I
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGV--VDVIV 168
Query: 219 DPQAP--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAA 276
P A ++NRGFAFV Y ++ A +R+++ +L G+ V WAEP+ D
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDED--T 226
Query: 277 ASQVKALYVKNLPENTTTKQLKELFQ--RHGEVTKVVTPPGKSGKRDFGFIHYAERSSAL 334
S VK LYV+NL +T+ + +++ F + G V +V RD+ F+H++ R A+
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 335 KAIKDTEKYEIDGQVLEVALARP 357
+A+K +DG +EV LA+P
Sbjct: 281 EAMKALNGKVLDGSPIEVTLAKP 303
>sp|Q0P4R6|RBM46_XENTR Probable RNA-binding protein 46 OS=Xenopus tropicalis GN=rbm46 PE=2
SV=1
Length = 534
Score = 141 bits (356), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 148/259 (57%), Gaps = 16/259 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E+ L L G+++E L+ + SGE++G+AFV + +KE A AI
Sbjct: 61 CEVFVGKIPRDMYEDKLVPLFARAGKIYEFRLMME-FSGENRGYAFVMYTNKEEALLAIR 119
Query: 164 ELCSKDF-KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + +GK I +S N RLFIG++P+ ++E + ++ V GV +++I P A
Sbjct: 120 MLNNYEICQGKFIGVCVSLDNCRLFIGSIPQEKRKEEILEEMKKVTEGV--MDVIVYPSA 177
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV+Y ++ A +R+K+ F+L G+T V+WA P+ D +V
Sbjct: 178 TDKTKNRGFAFVMYESHRAAAMARRKLIPGPFQLWGHTIKVAWASPEKEVDEE--TMQKV 235
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K LYV+NL +TT + +K F R+ G V +V RD+ F+H+ R A+ A+
Sbjct: 236 KVLYVRNLMMSTTEETIKAEFNRYKPGVVERV------KKIRDYAFVHFFRRDYAIAAMS 289
Query: 339 DTEKYEIDGQVLEVALARP 357
IDG +EV LA+P
Sbjct: 290 VMNGRLIDGARIEVTLAKP 308
>sp|Q8TBY0|RBM46_HUMAN Probable RNA-binding protein 46 OS=Homo sapiens GN=RBM46 PE=2 SV=1
Length = 533
Score = 141 bits (356), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 149/265 (56%), Gaps = 16/265 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 119
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSA 177
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +V
Sbjct: 178 TDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRV 235
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMS 289
Query: 339 DTEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>sp|P86049|RBM46_MOUSE Probable RNA-binding protein 46 OS=Mus musculus GN=Rbm46 PE=4 SV=1
Length = 533
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 149/264 (56%), Gaps = 16/264 (6%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 165 LCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAP 223
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSAT 178
Query: 224 --SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVK 281
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +VK
Sbjct: 179 DKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRVK 236
Query: 282 ALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339
LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 237 VLYVRNLMISTTEETIKAEFSKFKPGAVERV------KKLRDYAFVHFFHREDAVAAMSV 290
Query: 340 TEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 291 MNGKCIDGASIEVTLAKPVNKENT 314
>sp|Q4R2Z0|RBM46_MACFA Probable RNA-binding protein 46 OS=Macaca fascicularis GN=RBM46
PE=2 SV=2
Length = 485
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 149/265 (56%), Gaps = 16/265 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
EVF+G +P+D E++L + E G+++E L+ + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 119
Query: 164 ELCSKDFK-GKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQA 222
L + + + GK I +S N RLFIG +PK ++E ++ V GV +++I P A
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGV--VDVIVYPSA 177
Query: 223 P--SRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQV 280
++NRGFAFV Y ++ A +R+K+ F+L G+T V WA+P+ D +V
Sbjct: 178 TDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE--TMQRV 235
Query: 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
K LYV+NL +TT + +K F + G V +V RD+ F+H+ R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMS 289
Query: 339 DTEKYEIDGQVLEVALARPQTNKRT 363
IDG +EV LA+P + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 92.0 bits (227), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 131/275 (47%), Gaps = 21/275 (7%)
Query: 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162
G+ +++G L SE L D+ PIG V + + +D + S G+A+V F E +AI
Sbjct: 37 GASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAI 96
Query: 163 DELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTI 214
++L KGK R S+ + L +I N+ + K + G + +
Sbjct: 97 EQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFG-NILSC 155
Query: 215 ELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA 274
++ D S RGF FV + N + A R + + + L N V A S D
Sbjct: 156 KVATDENGVS--RGFGFVHFENESDA---RDAIEAVDGML-MNDQEVYVALHVSKKDRQ- 208
Query: 275 AAASQVKA----LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAE 329
+ +VKA +YVKN+ + T+ ++ +ELF ++G++T V GK R FGF+++ +
Sbjct: 209 SKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFED 268
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
++A KA+ + + E GQ L V A+ + + E
Sbjct: 269 HAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQE 303
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 127/287 (44%), Gaps = 36/287 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID-- 163
++I L + L + G + + D ++G S+GF FV F ++ A+ AI+
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATD-ENGVSRGFGFVHFENESDARDAIEAV 186
Query: 164 --------------ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
+ KD + K TN +++ N+ + +++EF ++ G
Sbjct: 187 DGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTN--VYVKNIDQETSQEEFEELFGKYGK 244
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS- 268
+ + L KD + + RGF FV + ++A A + ++ FK G V A+ K
Sbjct: 245 -ITSAVLEKDSEG--KLRGFGFVNFEDHAAAAKAVDELNELEFK--GQKLYVGRAQKKYE 299
Query: 269 -----TPDHSAA-----AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG 318
+ AA A Q L+VKNL ++ ++LKE F G +T ++G
Sbjct: 300 RLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETG 359
Query: 319 K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
R FGF+ ++ A KAI + + + G+ L VA+A+ + +R +
Sbjct: 360 NSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKEVRRNQ 406
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +F+ L +E L++ P G + +++D ++G S+GF FV F + E A +A
Sbjct: 320 QGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGFVCFSTPEEATKA 378
Query: 162 IDELCSKDFKGKTIRCSMSE 181
I E + GK + ++++
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQ 398
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 126/275 (45%), Gaps = 24/275 (8%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G V + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK IR S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+AFV + AD + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYAFVHFETQEAADKAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT---PPGKSGKRDFGFIHYAE 329
A A + +Y+KN E + LKELF + G+ V P GKS + FGF+ Y +
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEK 240
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+++ EI G+++ V A+ + ++ E
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D++ SKG+AFV F ++E A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G VD
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
++++++DP +++GF FV Y + A+ + ++M ++ G
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEMNGK--EISGKIIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K + Q LY+KNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+ KE+ +L A + V+I ++ +E L++L G+ V +++D + G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKG 232
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTI-------------------------RCSMSE 181
F FV++ E A +A++E+ K+ GK I R S +
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241
N L+I N+ + +++ RK G +++D R++GF FV + + +
Sbjct: 293 GVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPE 344
Query: 242 YSRQKMTSANFKLDGNTPT-VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLK 298
+ + +T N ++ G+ P V+ A+ K + ++ LP N Q +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQ 402
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 135/280 (48%), Gaps = 20/280 (7%)
Query: 97 LALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKE 156
+A + +++G L D +E+ L +G V + + +D+ + S G+A+V F
Sbjct: 3 VAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLA 62
Query: 157 VAKRAIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVG 208
A++A+D + KGK+IR S+ + L FI N+ KS K + G
Sbjct: 63 DAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFG 122
Query: 209 PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS 268
+ + +++ D Q +G+AFV + N + AD + ++M K V K+
Sbjct: 123 KILSS-KVMSDDQGS---KGYAFVHFQNQSAADRAIEEMNGKLLK----GCKVFVGRFKN 174
Query: 269 TPDHSA---AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGF 324
D A + AS+ +Y+KN + ++LK++F ++G+ V SGK + FGF
Sbjct: 175 RKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGF 234
Query: 325 IHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ + +A KA+++ +I+GQ++ V A+ + ++ E
Sbjct: 235 VSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 274
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 118/277 (42%), Gaps = 34/277 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L + G++ ++ D D G SKG+AFV F+++ A RAI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEM 157
Query: 166 CSKDFKG---------------KTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
K KG +R SE N ++I N ++ + V G
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-VYIKNFGGDMDDERLKDVFSKYGKT 216
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK--- 267
+ +++++ D S+ GF FV + ++ A + ++M + ++G V A+ K
Sbjct: 217 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 271
Query: 268 --------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK 319
Q LY+KNL + ++L+ F G +++V +
Sbjct: 272 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 331
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FG I ++ A KA+ + + + L +ALA+
Sbjct: 332 KGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 368
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 89/197 (45%), Gaps = 32/197 (16%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
++ K++ +L + + V+I D +E L+D+ G+ V ++ D SG+SKG
Sbjct: 173 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 231
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRC--------------SMSETNNR------- 185
F FV+F S E AK+A++E+ +D G+ I M E R
Sbjct: 232 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 291
Query: 186 ---LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADY 242
L+I N+ + +++ R G +I +K Q +++GF + + + +
Sbjct: 292 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF---SSPED 344
Query: 243 SRQKMTSANFKLDGNTP 259
+ + MT N ++ G+ P
Sbjct: 345 ATKAMTEMNGRILGSKP 361
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 136/301 (45%), Gaps = 31/301 (10%)
Query: 75 VEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVG 134
++D+ K+ A+ SE + ++ + +++G L SE L D+ PIG V +
Sbjct: 17 IQDDQKQAATGSESQ--------SVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIR 68
Query: 135 LVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN--------NRL 186
+ +D + S G+A+V F E ++AI++L KG+ R S+ + +
Sbjct: 69 VCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNI 128
Query: 187 FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQK 246
FI N+ K G + + ++ D S +GF FV + A ++
Sbjct: 129 FIKNLHPDIDNKALYDTFSVFG-DILSSKIATDENGKS--KGFGFVHFEEEGAA---KEA 182
Query: 247 MTSAN-FKLDGN----TPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELF 301
+ + N L+G P +S E S + + A + LYVKN+ TT +Q +ELF
Sbjct: 183 IDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTN---LYVKNINSETTDEQFQELF 239
Query: 302 QRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTN 360
+ G + GK + FGF++Y + A+KA++ E++G+ L V A+ +
Sbjct: 240 AKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNE 299
Query: 361 K 361
+
Sbjct: 300 R 300
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 133/285 (46%), Gaps = 32/285 (11%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L D + L D G++ + D ++G+SKGF FV F + AK AID L
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 166 CSKDFKGKTIRCS-----------MSETN---NRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
G+ I + + ET L++ N+ T+++F+++ GP V
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 246
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ L KD A + +GF FV Y + A + + + + +L+G V A+ K+
Sbjct: 247 -SASLEKD--ADGKLKGFGFVNYEKHEDAVKAVEALNDS--ELNGEKLYVGRAQKKNERM 301
Query: 272 H-----------SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK- 319
H A Q L+VKNL ++ ++L+E F +G +T ++GK
Sbjct: 302 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS 361
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ FGF+ ++ A KAI + + + G+ L VA+A+ + +R++
Sbjct: 362 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 406
Score = 40.0 bits (92), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +F+ L +E L + P G + +++ ++G+SKGF FV F + E A +A
Sbjct: 320 QGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKA 378
Query: 162 IDELCSKDFKGKTIRCSMSE 181
I E + GK + ++++
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQ 398
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 120/273 (43%), Gaps = 13/273 (4%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 45 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 104
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KGK R S+ + L FI N+ + K G +
Sbjct: 105 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NIL 163
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + D K
Sbjct: 164 SCKVAQDEFGNSKGYGF---VHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 220
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
+ +Y+KNL + + ++ +++F++ GE+T + GK R FGF++Y+
Sbjct: 221 FEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHD 280
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA A+ + E+ GQ L V A+ + + E
Sbjct: 281 SAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEE 313
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 123/287 (42%), Gaps = 44/287 (15%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + V+I L ++ SEE+ R + E GE+ L +D++ G+S+GF
Sbjct: 214 KKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQE-GKSRGFG 272
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIEDV 207
FV + + + A+ A+DE+ K+ KG+ +L++G K E+E RK E
Sbjct: 273 FVNYSTHDSAQAAVDEMNDKEVKGQ-----------KLYVGRAQKKHEREEELRKQYE-- 319
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKM----------TSANFKLDGN 257
L K + N LY N D +K+ TSA D N
Sbjct: 320 -----AARLEKASKYQGVN------LYVKNLTDDIDDEKLREMFAPYGTITSAKVMRDTN 368
Query: 258 TPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS 317
+ + A + + + Q KE + +V GKS
Sbjct: 369 IERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDDQDKENKKSDKKVL------GKS 422
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ FGF+ ++ A KA+ + + I+G+ L VALA+ + +R++
Sbjct: 423 --KGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDVRRSQ 467
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LKELF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 125/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L++L G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 127/285 (44%), Gaps = 32/285 (11%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L D + L D G + + D ++G+SKGF +V F E A AID L
Sbjct: 125 IFIKNLHPDIDNKALYDTFSVFGNILSSKVATD-ETGKSKGFGYVHFEEDESASEAIDAL 183
Query: 166 CSKDFKGKTIRC--------------SMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
G+ I M ++I N+ T+KEF +++ G
Sbjct: 184 NGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFGK-T 242
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
D++ L + P+ N+GF FV + N+ A +++ + FK G V+ A+ K
Sbjct: 243 DSVVLERTPEG--ENKGFGFVNFVNHEDAVKCVEELNNTEFK--GQPLYVNRAQKKYERQ 298
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK- 319
A Q L++KNL ++ K+L+E F +G +T ++GK
Sbjct: 299 QELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTENGKS 358
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ FGF+ ++ A KAI + + + G+ L VA+A+ + +R++
Sbjct: 359 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 403
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 124/276 (44%), Gaps = 25/276 (9%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L SE L D+ PIG V + + +D + S G+A+V F + AK AI+
Sbjct: 35 ASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIE 94
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+L KGK R S+ + L FI N+ K G + + +
Sbjct: 95 KLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFG-NILSSK 153
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT----PTVSWAEPKSTPD 271
+ D S +GF +V + + A + + L+G P +S E +S +
Sbjct: 154 VATDETGKS--KGFGYVHFEEDESASEAIDALNG--MLLNGQEIYVGPHLSKKERESKFE 209
Query: 272 HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVV---TPPGKSGKRDFGFIHYA 328
A + V Y+KN+ TT K+ +EL + G+ VV TP G++ + FGF+++
Sbjct: 210 EMKANFTNV---YIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGEN--KGFGFVNFV 264
Query: 329 ERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A+K +++ E GQ L V A+ + ++ E
Sbjct: 265 NHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQE 300
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +FI L ++ L + P G + V ++G+SKGF FV F + E A +A
Sbjct: 317 QGINLFIKNLDDSIDDKKLEEEFAPYGTITSAK-VMTTENGKSKGFGFVCFSTPEEATKA 375
Query: 162 IDELCSKDFKGKTIRCSMSE 181
I E + GK + ++++
Sbjct: 376 ITEKNQQIVAGKPLYVAIAQ 395
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 126/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L DA+E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ + + GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LKELF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 125/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L++L G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 121/273 (44%), Gaps = 13/273 (4%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 46 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 105
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KGK R S+ + L FI N+ + K G +
Sbjct: 106 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 164
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + D K
Sbjct: 165 SCKVAQDEFGNSKGYGF---VHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 221
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
+ +Y+KN+ ++ T ++ +ELF++ GE+T + GK R FGF++++
Sbjct: 222 FEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHE 281
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA A+ + + EI Q L V A+ + + E
Sbjct: 282 SAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEE 314
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 131/294 (44%), Gaps = 49/294 (16%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + V+I + +D +EE+ R+L E GE+ L +D++ G+S+GF
Sbjct: 215 KKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GKSRGFG 273
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIEDV 207
FV F + E A+ A+DE+ K+ + +L++G K E+E RK E
Sbjct: 274 FVNFSTHESAQAAVDEMNEKEIR-----------TQKLYVGRAQKKHEREEELRKQYE-- 320
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKM----------TSANFKLDGN 257
L K + N LY N D +K+ TSA D N
Sbjct: 321 -----AARLEKASKYQGVN------LYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDTN 369
Query: 258 TPTVSWAEP-------KSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKV 310
E ++T ++ ++ KA + P ++ ++ ++ + + +
Sbjct: 370 IERTQTPESDKEKENKEATKENEKESSEAEKAEKTEEKPADSGDEKKEDKESKKADKKGL 429
Query: 311 VTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
GKS + FGF+ ++ A KA+ + + ++G+ L VALA+ + +R++
Sbjct: 430 ----GKS--KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 477
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 141/302 (46%), Gaps = 22/302 (7%)
Query: 76 EDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGL 135
E D ++S+ D E+ + + + + +++G L +E L ++ PIG+V + +
Sbjct: 39 ESSDATSSSVPADSAEEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRV 98
Query: 136 VKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN--------NRLF 187
+D S +S G+A+V + E ++AI+EL +G+ R S+ + +F
Sbjct: 99 CRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIF 158
Query: 188 IGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKM 247
I N+ + K G + ++++ D S+ F FV Y A + +
Sbjct: 159 IKNLHPAIDNKALHDTFSAFGK-ILSVKVATDDLGQSK--CFGFVHYETEEAAQAA---I 212
Query: 248 TSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKA----LYVKNLPENTTTKQLKELFQR 303
S N L N V + S D + ++KA +YVKN+ T K+ +ELF
Sbjct: 213 ESVNGMLL-NDREVYVGKHVSKKDRESKL-EEMKANYTNIYVKNIDLAYTEKEFEELFAP 270
Query: 304 HGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR 362
G++T + GK + FGF+++ E +A KA+++ EI+GQ + V A+ + +R
Sbjct: 271 FGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQ-KKRER 329
Query: 363 TE 364
TE
Sbjct: 330 TE 331
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 96/387 (24%), Positives = 162/387 (41%), Gaps = 80/387 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID-- 163
+FI L + L D G++ V + D D G+SK F FV + ++E A+ AI+
Sbjct: 157 IFIKNLHPAIDNKALHDTFSAFGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIESV 215
Query: 164 --------------ELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGP 209
+ KD + K + TN +++ N+ ++TEKEF ++ G
Sbjct: 216 NGMLLNDREVYVGKHVSKKDRESKLEEMKANYTN--IYVKNIDLAYTEKEFEELFAPFGK 273
Query: 210 GVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST 269
+ +I L KD A +++GF FV + + A + +++ +++G V A+ K
Sbjct: 274 -ITSIYLEKD--AEGKSKGFGFVNFEEHEAAAKAVEELNDK--EINGQKIYVGRAQKKR- 327
Query: 270 PDHSAAAASQVKA-------------LYVKNLPENTTTKQLKELFQRHGEVTK---VVTP 313
+ + Q +A L+VKNL E +++L+E F+ G +T +V
Sbjct: 328 -ERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDD 386
Query: 314 PGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGV 373
GKS + FGF+ ++ A KAI + + ++G+ L VALA+ + +R++ A
Sbjct: 387 AGKS--KGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQARN 444
Query: 374 HPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYG-RGQMPAGMHMVPMVLPDGR 432
A G G PM YG +G P P+GR
Sbjct: 445 QMRMQNAAAAGGLPGQ----------------FMPPMFYGQQGFFP----------PNGR 478
Query: 433 IGYVLQQPGVQMPLPPPRPRRVERGPG 459
P P P P+ + RG G
Sbjct: 479 ---------GNAPFPGPNPQMMMRGRG 496
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 3/152 (1%)
Query: 30 LDDDGEVGRDGNVKQNDEDEEYDAETSKEDQSPGANGSHINTEDAVEDEDKRTASISEDE 89
L+ D E G N E+ E A+ +E NG I A + ++ + E
Sbjct: 279 LEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYE 338
Query: 90 KEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAF 149
+ ++L G +F+ L + E L + +P G + ++ D D+G+SKGF F
Sbjct: 339 AVRLEKLSKY--QGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVD-DAGKSKGFGF 395
Query: 150 VAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181
V F + E A +AI E+ + GK + ++++
Sbjct: 396 VCFSTPEEATKAITEMNQRMVNGKPLYVALAQ 427
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 120/273 (43%), Gaps = 13/273 (4%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 108
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KGK R S+ + L FI N+ + K G +
Sbjct: 109 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NIL 167
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + D K
Sbjct: 168 SCKVAQDEFGNSKGYGF---VHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 224
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
+ +Y+KN+ + T ++ +++F++ GE+T + GK R FGF++++
Sbjct: 225 FEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHD 284
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA A+ + EI GQ L V A+ + + E
Sbjct: 285 SAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEE 317
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 131/330 (39%), Gaps = 77/330 (23%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + L D G + + +D + G SKG+ FV + + E A AI +
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 166 C------SKDFKGKTI----RCS----MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G I R S M ++I N+ + T++EFRK+ E G +
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGE-I 259
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ L +D + ++RGF FV + + A + +M K G V A+ K +
Sbjct: 260 TSATLSRDQEG--KSRGFGFVNFSTHDSAQAAVDEMNDKEIK--GQKLYVGRAQKKHERE 315
Query: 272 HSA-----------AAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
A+ Q LYVKNL ++ ++L+ELF G +T KV+ +G
Sbjct: 316 EELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTAG 375
Query: 319 K--------------------------------------------RDFGFIHYAERSSAL 334
+ + FGF+ ++ A
Sbjct: 376 ETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKKTEKKILGKSKGFGFVCFSSPDEAS 435
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + + ++G+ L VALA+ + +R++
Sbjct: 436 KAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 465
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 44/124 (35%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDS-------------------- 141
G +++ L D +E LR+L P G + +++D +
Sbjct: 334 QGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKE 393
Query: 142 ------------------------GESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177
G+SKGF FV F S + A +A+ E+ + GK +
Sbjct: 394 GEEKTEEKPKESEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYV 453
Query: 178 SMSE 181
++++
Sbjct: 454 ALAQ 457
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 120/273 (43%), Gaps = 13/273 (4%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 108
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KGK R S+ + L FI N+ + K G +
Sbjct: 109 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NIL 167
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + D K
Sbjct: 168 SCKVAQDEFGNSKGYGF---VHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 224
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
+ +Y+KN+ + T ++ +++F++ GE+T + GK R FGF++++
Sbjct: 225 FEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHD 284
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA A+ + EI GQ L V A+ + + E
Sbjct: 285 SAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEE 317
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 131/332 (39%), Gaps = 79/332 (23%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + L D G + + +D + G SKG+ FV + + E A AI +
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 166 C------SKDFKGKTI----RCS----MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G I R S M ++I N+ + T++EFRK+ E G +
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGE-I 259
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ L +D + ++RGF FV + + A + +M K G V A+ K +
Sbjct: 260 TSATLSRDQEG--KSRGFGFVNFSTHDSAQAAVDEMNDKEIK--GQKLYVGRAQKKHERE 315
Query: 272 HSA-----------AAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
A+ Q LYVKNL ++ ++L+ELF G +T KV+ +G
Sbjct: 316 EELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTTG 375
Query: 319 K----------------------------------------------RDFGFIHYAERSS 332
+ + FGF+ ++
Sbjct: 376 ETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEPKKTEKKILGKSKGFGFVCFSSPDE 435
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + + ++G+ L VALA+ + +R++
Sbjct: 436 ASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 467
Score = 32.7 bits (73), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 261 VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKR 320
V A P +TP +A+ +LYV L + T L ELF G+V + +R
Sbjct: 35 VESASPSTTP---SASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRR 91
Query: 321 DFG--FIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
G +++Y + +A++D I G+ + ++
Sbjct: 92 SLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQ 129
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ + + GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + +KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVE-----------DEDKRTASISEDEKEKHDQLLALPPHGSEV 106
E+ S G H T++A E ++ K + KE+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
K+ GK I
Sbjct: 253 GKELNGKQI 261
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N + ++ + + GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 136/314 (43%), Gaps = 30/314 (9%)
Query: 64 ANGSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDL 123
ANG+ INT D T + + + ++ + +++G L +E L +L
Sbjct: 17 ANGAQINTNVPAASGDAPTPTTAAQQAHQN---------SASLYVGELDPSVTEAMLFEL 67
Query: 124 CEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN 183
IG+V + + +D + S G+A+V + S E ++A++EL KGK R S+ +
Sbjct: 68 FSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRD 127
Query: 184 NRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYY 235
L FI N+ + K G + + ++ +D S +G+ FV Y
Sbjct: 128 PALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG-NILSCKVAQDELGNS--KGYGFVHYE 184
Query: 236 NNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKA----LYVKNLPEN 291
A+ + + + L+ V PK + ++KA +YVKN+ +
Sbjct: 185 TAEAANNAIKHVNG--MLLNEKKVFVGHHIPKK---ERMSKFEEMKANFTNIYVKNIDLD 239
Query: 292 TTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVL 350
T + +ELF++HG++T GK R FGF++Y +A A+ E GQ L
Sbjct: 240 VTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKL 299
Query: 351 EVALARPQTNKRTE 364
V A+ + + E
Sbjct: 300 YVGRAQKKHEREEE 313
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 96/400 (24%), Positives = 155/400 (38%), Gaps = 100/400 (25%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + L D G + + +D + G SKG+ FV + + E A AI +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 166 C------SKDFKGKTI----RCS----MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G I R S M +++ N+ T+++FR++ E G +
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHG-DI 255
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ + +D Q SR GF FV Y + A + + FK G V A+ K +
Sbjct: 256 TSASIARDDQGKSR--GFGFVNYIRHEAAAVAVDHLNDIEFK--GQKLYVGRAQKKHERE 311
Query: 272 H-------SAAAASQVK----ALYVKNLPENTTTKQLKELF------------------- 301
+A Q K LY+KNL ++ ++L+++F
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVILRDEEKK 371
Query: 302 ----------------------------QRHGEVTKV---VTPPGKS---GK-RDFGFIH 326
+++GE TK VT G+ GK + FGF+
Sbjct: 372 DEEEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAGDKVTIKGEKKILGKSKGFGFVC 431
Query: 327 YAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHAGYGSF 386
++ A KA+ + + I+G+ L VALA+ + + R + + + + F
Sbjct: 432 FSNPDEATKAVTEMNQKMIEGKPLYVALAQ-RKDVRKNQLEATIQARNQLRMQQQQQQQF 490
Query: 387 AGTAYGSVSTGLGVAAGAGLQQPMIY---GRGQM--PAGM 421
G ++ G QQPM+Y RGQM PAGM
Sbjct: 491 GGIPQMFIAPG---------QQPMMYPPGARGQMPFPAGM 521
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 19/174 (10%)
Query: 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164
++FIGGL + +++ LRD E GEV + +++D +G S+GF F+ F++ + ++E
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKN----PKCVNE 219
Query: 165 LCSKD--FKGKTIRCSMS------ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVD-TIE 215
+ SK+ GK I + E ++F+G VP TE+EFR G +D T+
Sbjct: 220 VMSKEHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLM 279
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST 269
+ KD P RGF FV Y N + + + M+ + G V A PK++
Sbjct: 280 MDKDTGRP---RGFGFVTYENESAVEAT---MSQPYITIHGKPVEVKRATPKAS 327
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+++F+GG+P D +EE+ R+ G V + L+ DKD+G +GF FV + ++ + +
Sbjct: 247 AKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMS 306
Query: 164 E 164
+
Sbjct: 307 Q 307
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 122/273 (44%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIDKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LKE F ++G V GK R FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ D +++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTE 275
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 122/289 (42%), Gaps = 58/289 (20%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAID++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKM 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKSWTE---------KEFRKV-IEDVGPGVD--- 212
M + ++F+G KS E KEF V I++ G +D
Sbjct: 159 NG-----------MLLNDRKVFVGRF-KSRKEREAELGARAKEFTNVYIKNFGEDMDDER 206
Query: 213 ------------TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260
+++++ D ++RGF FV + + A + M + L+G
Sbjct: 207 LKEWFGQYGAALSVKVMTDDHG--KSRGFGFVSFERHEDAQKAVDDMNGKD--LNGKAIF 262
Query: 261 VSWAEPK-----------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT- 308
V A+ K Q LYVKNL + ++L++ F G +T
Sbjct: 263 VGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITS 322
Query: 309 -KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
KV+ G+S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 323 AKVMMEGGRS--KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVEDE-DKRTASISEDEK----------EKHDQLLALPPHGSEV 106
E+ S G H T++A E DK + D K E+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L++ G V ++ D D G+S+GF FV+F E A++A+D++
Sbjct: 194 YIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMN 252
Query: 167 SKDFKGKTI 175
KD GK I
Sbjct: 253 GKDLNGKAI 261
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 121/270 (44%), Gaps = 14/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ ++IG L D +E L + P G + + + +D + S +A++ F+ A+RA+D
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ +S K G + + +
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D +RG+ FV + + A+ + Q M D + + A
Sbjct: 130 VVCDEHG---SRGYGFVHFETHEAANRAIQTMNGMLLN-DRKVFVGHFKSRRERELEYGA 185
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
+ +Y+KN E+ K+L+E+F G V SG+ R FGF++Y A
Sbjct: 186 KVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQ 245
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + E++G+++ V A+ + +++E
Sbjct: 246 KAVSEMNGKEVNGRMIYVGRAQKRIERQSE 275
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 117/279 (41%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + + L D G + +V D+ S+G+ FV F + E A RAI +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTM 158
Query: 166 CSK----------DFKGKTIR-----CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
FK + R + E N ++I N + +K R++ G
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTN-VYIKNFGEDMDDKRLREIFSAFGNT 217
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK-ST 269
+ ++ D R+RGF FV Y N+ A + +M +++G V A+ +
Sbjct: 218 LSVKVMMDDS---GRSRGFGFVNYGNHEEAQKAVSEMNGK--EVNGRMIYVGRAQKRIER 272
Query: 270 PDHSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
Q+K LYVKNL + +L++ F +G +T KV+T G S
Sbjct: 273 QSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 124/272 (45%), Gaps = 19/272 (6%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L + ++ L D +G V V + +D + S G+ +V F + + A RAI
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
EL GK IR S + +FI N+ +S K G + + +
Sbjct: 96 ELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFG-NIVSCK 154
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSA--NFKLDGNTPTVSWAEPKSTPDHS 273
+ D + +++G+ FV Y N A + +K+ N K P + E ST
Sbjct: 155 VAVD--SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDST---- 208
Query: 274 AAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGKRDFGFIHYAERSS 332
A ++ +YVKNL E+TT LK F +G++T VV G+ + FGF+++
Sbjct: 209 -ANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADD 267
Query: 333 ALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A +A++ ++ D + V A+ ++ + TE
Sbjct: 268 AARAVESLNGHKFDDKEWYVGRAQKKSERETE 299
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 94/364 (25%), Positives = 160/364 (43%), Gaps = 53/364 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + + L D G + + D SG+SKG+ FV + ++E A++AI++L
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKL 184
Query: 166 CSKDFKGKTI-------RCSMSETNNR-----LFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
K + R T N+ +++ N+ +S T+ + + + G + +
Sbjct: 185 NGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK-ITS 243
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAEPKSTPD- 271
++KD + +++GF FV + N AD + + + S N K D V A+ KS +
Sbjct: 244 AVVMKDGEG--KSKGFGFVNFEN---ADDAARAVESLNGHKFDDKEWYVGRAQKKSERET 298
Query: 272 ----------HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSGK 319
AA Q LYVKNL + + ++LKE+F G VT KV+ P + K
Sbjct: 299 ELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSK 358
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRT--EGVYSCA------- 370
GF+ +A A +A+ I+ + L VA+A+ + ++R + +S
Sbjct: 359 GS-GFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQP 417
Query: 371 -----AGVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGR--GQMPAGMHM 423
V+P G P G F G A ++ + G G QQ ++ G G P
Sbjct: 418 SVGPRMPVYPPGGPGIGQQMFYGQAPPAM---IPPQPGYGYQQQLVPGMRPGGGPVPSFF 474
Query: 424 VPMV 427
+PMV
Sbjct: 475 MPMV 478
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 76 EDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGL 135
E E + ++ KE D+ S +++ L S+E L+++ P G V +
Sbjct: 295 ERETELRVRYEQNLKEAADKF-----QSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKV 349
Query: 136 VKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181
++D + G SKG FVAF + E A A+ +L K + K + ++++
Sbjct: 350 MRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQ 394
Score = 39.3 bits (90), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 5/121 (4%)
Query: 250 ANFKLDGNTPTVSWAEPKSTPDHSA-AAASQV--KALYVKNLPENTTTKQLKELFQRHGE 306
A +L G TP S A S P S A A+Q +LYV +L N T QL + F + G
Sbjct: 2 AQVQLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGT 61
Query: 307 VTKVVTPPGKSGKRD--FGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
V V +R +G++++ A +AI++ + G+ + V + + R
Sbjct: 62 VVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRS 121
Query: 365 G 365
G
Sbjct: 122 G 122
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 119/270 (44%), Gaps = 14/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ ++IG L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFG-DILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D +RG+ FV + A+ + Q M D + + A
Sbjct: 130 VVCDEYG---SRGYGFVHFETQEAANRAIQTMNGMLLN-DRKVFVGHFKSRRERELEYGA 185
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
+ +Y+KN E+ K+LKE+F G V SG+ R FGF++Y A
Sbjct: 186 KVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQ 245
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + E++G+++ V A+ + ++ E
Sbjct: 246 KAVTEMNGKEVNGRMVYVGRAQKRIERQGE 275
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 124/280 (44%), Gaps = 40/280 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + L D G++ +V D+ S+G+ FV F ++E A RAI +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTM 158
Query: 166 CSK----------DFKGKTIR-----CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
FK + R + E N ++I N + +K +++ G
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTN-VYIKNFGEDMDDKRLKEIFSAFGNT 217
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPK-S 268
+ +++++ D R+RGF FV Y N+ + +++ +T N K ++G V A+ +
Sbjct: 218 L-SVKVMMDNSG--RSRGFGFVNYGNH---EEAQKAVTEMNGKEVNGRMVYVGRAQKRIE 271
Query: 269 TPDHSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEV--TKVVTPPGK 316
Q+K LYVKNL + +L++ F +G + TKV+T G
Sbjct: 272 RQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGH 331
Query: 317 SGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
S + FGF+ ++ A KA+ + + + L VALA+
Sbjct: 332 S--KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 120/270 (44%), Gaps = 14/270 (5%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ +S K G + + +
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA 275
++ D +RG+ FV + A+ + Q M D + + A
Sbjct: 130 VVCDEHG---SRGYGFVHFETQEAANRAIQTMNGMLLN-DRKVFVGHFKSRRERELEYGA 185
Query: 276 AASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSAL 334
+ +Y+KN E+ K+L+E+F G V +G+ R FGF++Y A
Sbjct: 186 KVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQ 245
Query: 335 KAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
KA+ + E++G+++ V A+ + ++ E
Sbjct: 246 KAVSEMNGKEVNGRMIYVGRAQKRIERQGE 275
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 118/279 (42%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + + L D G + +V D+ S+G+ FV F ++E A RAI +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTM 158
Query: 166 CSK----------DFKGKTIR-----CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPG 210
FK + R + E N ++I N + +K R++ G
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTN-VYIKNFGEDMDDKRLREIFSAFGNT 217
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK-ST 269
+ ++ D R+RGF FV Y N+ A + +M +++G V A+ +
Sbjct: 218 LSVKVMMDDT---GRSRGFGFVNYGNHEEAQKAVSEMNGK--EVNGRMIYVGRAQKRIER 272
Query: 270 PDHSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
Q+K LYVKNL + +L++ F +G +T KV+T G S
Sbjct: 273 QGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S G+A++ F+ A+RA+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ + KG+ IR S+ + +FI N+ S K G + + +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
+ D +RGF FV + + A +Q + + N L N V KS + A
Sbjct: 130 VACDEHG---SRGFGFVHFETHEAA---QQAINTMNGMLL-NDRKVFVGHFKSRREREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-KRDFGFIHYAERS 331
A A + +YVKNLP + + L++LF + G++ V SG R FGF+++ +
Sbjct: 183 LGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ E+ G++L A+ + ++ E
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 69 INTEDAVEDEDKRT-ASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPI 127
INT + + D++ + +E+ +L A + +++ LP D E+ L+DL
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQF 214
Query: 128 GEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175
G++ V +++D +SG S+ F FV F E A++A+ + K+ G+ +
Sbjct: 215 GKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 120/279 (43%), Gaps = 38/279 (13%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L D G + + D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ R +E R +++ N+P E+ + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFK-LDGNTPTVSWAEPK-ST 269
++++++D SR GF N + +++ + N K + G A+ +
Sbjct: 219 -SVKVMRDNSGHSRCFGFV-----NFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVER 272
Query: 270 PDHSAAAASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKS 317
+ Q+K LYVKNL ++ +L++ F +G +T KV+T G S
Sbjct: 273 QNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHS 332
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 --KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Score = 35.8 bits (81), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
E+ K D+L G +++ L ++ LR P G + ++ + G SKGF
Sbjct: 281 EQMKQDRLRRY--QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFG 336
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181
FV F S E A +A+ E+ + K + ++++
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 125/274 (45%), Gaps = 17/274 (6%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
+ + +++G L + +E L D+ P+G + + + +D + S G+A+V + E K+A
Sbjct: 48 NNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKA 107
Query: 162 IDELCSKDFKGKTIRCSMSETN--------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDT 213
I EL + G+ R SE + +FI N+ + K + G V +
Sbjct: 108 IQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGE-VLS 166
Query: 214 IELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAEPKS-TPD 271
++ D S RGF FV + + A + + + N ++G V+ PK
Sbjct: 167 CKVALDENGNS--RGFGFVHFKEESDA---KDAIEAVNGMLMNGLEVYVAMHVPKKDRIS 221
Query: 272 HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAER 330
A + +YVKN+ TT ++ ++LF ++GE+ GK + FGF+++ +
Sbjct: 222 KLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDH 281
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
++A KA+++ E Q L V A+ + + E
Sbjct: 282 NAAAKAVEELNGKEFKSQALYVGRAQKKYERAEE 315
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 141/346 (40%), Gaps = 51/346 (14%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L + L + GEV + D ++G S+GF FV F+ + AK AI+ +
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALD-ENGNSRGFGFVHFKEESDAKDAIEAV 198
Query: 166 CSKDFKGKTIRCSM-------------SETN-NRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
G + +M ++ N +++ N+ T++EF ++ G V
Sbjct: 199 NGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIV 258
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
+ L KD A + +GF FV + ++ A + +++ FK V A+ K
Sbjct: 259 -SAALEKD--AEGKPKGFGFVNFVDHNAAAKAVEELNGKEFK--SQALYVGRAQKKYERA 313
Query: 272 HSA-----------AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK- 319
A Q L++KNL ++ ++LKE F +G +T + G
Sbjct: 314 EELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNS 373
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAA-------- 371
+ FGF+ ++ A KA+ + + + G+ L VA+A+ + +R++ A
Sbjct: 374 KGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQIRFQQ 433
Query: 372 -----------GVHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGL 406
G+ +P YG A + + G+ GAG+
Sbjct: 434 QQQQQAAAAAAGMPGQYMPQMFYGVMAPRGFPGPNPGMNGPMGAGI 479
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +FI L +E L++ P G + +++D++ G SKGF FV F S E A +A
Sbjct: 332 QGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQE-GNSKGFGFVCFSSPEEATKA 390
Query: 162 IDELCSKDFKGKTIRCSMSE 181
+ E + GK + ++++
Sbjct: 391 MTEKNQQIVAGKPLYVAIAQ 410
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 128/273 (46%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L D +E L + P G + + + +D + S +A+V F+ + A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KGK +R S+ + L F+ N+ KS K + G + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG-NILSCN 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + + A+ + +KM L+G V + KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETHEAAERAIKKMNG--MLLNGR--KVFVGQFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN E+ ++LK+LF + G V +SGK + FGF+ +
Sbjct: 183 LGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 120/278 (43%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+F+ L K + + L D G + +V D++ SKG+ FV F + E A+RAI ++
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKM 158
Query: 166 CSKDFKGKTIRCSMSETNN--------------RLFIGNVPKSWTEKEFRKVIEDVGPGV 211
G+ + ++ ++I N + ++ + + GP +
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M +L+G V A+ K
Sbjct: 219 -SVKVMTDESG--KSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
QV LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 42/213 (19%)
Query: 58 EDQSPGANGSHINTEDAVEDEDKRTASI-----------SEDEKEKHDQLLALPPHGSEV 106
E+ S G H T +A E K+ + + KE+ +L A V
Sbjct: 134 ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I +D +E L+DL G V ++ D +SG+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI-------------------------RCSMSETNNRLFIGNVPKSWTEKEFR 201
K+ GK I R + + N L++ N+ ++ R
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN-LYVKNLDDGIDDERLR 311
Query: 202 KVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLY 234
K G TI K R++GF FV +
Sbjct: 312 KAFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 116/273 (42%), Gaps = 13/273 (4%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + +R
Sbjct: 39 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGER 98
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+DEL KGK R S+ + L FI N+ + K G +
Sbjct: 99 ALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 157
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + D K
Sbjct: 158 SCKVAQDEFGVSKGYGF---VHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 214
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
+ +Y+KN+ ++ ++LF++ GE+T GK R FGF++++
Sbjct: 215 FEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHE 274
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA A+++ E+ Q L V A+ + + E
Sbjct: 275 SAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEE 307
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 127/285 (44%), Gaps = 40/285 (14%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + ++I + + +E+ R L E GE+ L +D + G+S+GF
Sbjct: 208 KKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFG 266
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIEDV 207
FV F + E A+ A++E+ K+ + + +L++G K E+E RK E
Sbjct: 267 FVNFSTHESAQAAVEEMNDKEVRSQ-----------KLYVGRAQKKHEREEELRKQYEAA 315
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKM--------TSANFKLDGNTP 259
+ S+ +G LY N D K+ T + K+ +T
Sbjct: 316 -----------RMEKASKYQGVN--LYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTA 362
Query: 260 TVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK 319
V A P+S SA ++ A + ++ ++ ++ E P GKS
Sbjct: 363 PVETATPESETKESANKENEKAA----EGEKEPAAEEKEKEEKKEAEQKPEKKPLGKS-- 416
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ FGF+ ++ A KA+ + + ++G+ L VALA+ + +R++
Sbjct: 417 KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 461
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 120/275 (43%), Gaps = 17/275 (6%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 48 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 107
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KGK R S+ + L FI N+ + K G +
Sbjct: 108 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 166
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + D K
Sbjct: 167 SCKVAQDEFGNSKGYGF---VHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 223
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVT---PPGKSGKRDFGFIHYAE 329
+ +Y+KN+ + T ++ +++F++ GE+T P GKS R FGF++Y+
Sbjct: 224 FDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKS--RGFGFVNYST 281
Query: 330 RSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
SA A+ + E+ Q L V A+ + + E
Sbjct: 282 HESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEE 316
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 125/289 (43%), Gaps = 45/289 (15%)
Query: 87 EDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKG 146
+D + K D++ A + + ++I + D +EE+ R + E GE+ L +D + G+S+G
Sbjct: 218 KDRQSKFDEMKA---NFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPE-GKSRG 273
Query: 147 FAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIE 205
F FV + + E A+ A+DE+ K+ K +L++G K E+E RK E
Sbjct: 274 FGFVNYSTHESAQAAVDEMHDKEVK-----------TQKLYVGRAQKKHEREEELRKQYE 322
Query: 206 DVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKM----------TSANFKLD 255
L K + N LY N D +K+ TSA D
Sbjct: 323 -------AARLEKASKYQGVN------LYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD 369
Query: 256 GNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPG 315
+TP AE TPD S K K E ++ KE + + TK
Sbjct: 370 -STP----AERTETPD-SEKEKEVNKENEKKEDEEKAAEEKPKESDEEKKDETKKSDKKL 423
Query: 316 KSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ FGF+ ++ A KA+ + + ++G+ L VALA+ + +R++
Sbjct: 424 LGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 472
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 115/256 (44%), Gaps = 17/256 (6%)
Query: 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVA 158
P S +++G L + SE+ L ++ +G V + + +D ++ S +A+V + + A
Sbjct: 5 FTPISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADA 64
Query: 159 KRAIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPG 210
+RA+D L + +GK R S+ + L FI N+ K K G
Sbjct: 65 ERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFG-N 123
Query: 211 VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTP 270
+ + +++ D S +GF FV Y AD + K+ N V KS+
Sbjct: 124 ILSCKVVTDDGNSS--KGFGFVHYETQESADKAIAKVNGMMI----NGQKVFVGPFKSSK 177
Query: 271 DHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAE 329
+ + ++ KNL E+ QLKEL Q++GE+T + GK + FGF ++ E
Sbjct: 178 ERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANF-E 236
Query: 330 RSSALKAIKDTEKYEI 345
+ A K + + E +I
Sbjct: 237 SAEAAKNVVENENGKI 252
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 121/287 (42%), Gaps = 45/287 (15%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L K + L D G + +V D D SKGF FV + ++E A +AI ++
Sbjct: 100 VFIKNLDKGIDHKALYDTFSAFGNILSCKVVTD-DGNSSKGFGFVHYETQESADKAIAKV 158
Query: 166 CSKDFKGKTIRCSMSETNNRLFIGNVPKS----------WTEKEFRKVIEDVGPG----- 210
G+ ++F+G S +T F+ + EDVGP
Sbjct: 159 NGMMINGQ-----------KVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKEL 207
Query: 211 ------VDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSW- 263
+ I ++ D + S+ GFA N A+ ++ + + N K+ P +
Sbjct: 208 LQQYGEITNITIMADDKGKSKGFGFA-----NFESAEAAKNVVENENGKIFHGKPIYAGR 262
Query: 264 ----AEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK--VVTPPGKS 317
E ++ H+ Q LY+KN+ ++ +L+E+F + G +T V+ +
Sbjct: 263 AQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKAT 322
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+ FGF+ Y A +A+ + I + L VALA+ + +R +
Sbjct: 323 TSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALAQRKDIRRAQ 369
Score = 38.9 bits (89), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 39/80 (48%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G ++I + + LR++ G + ++KD + SKGF FV + + + A RA
Sbjct: 282 QGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRA 341
Query: 162 IDELCSKDFKGKTIRCSMSE 181
+ E+ + K + ++++
Sbjct: 342 VTEMNGRMIGTKPLYVALAQ 361
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163
+ +++G L +D +E L + P G + + + +D + S G+A+V F+ A+RA+D
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 164 ELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215
+ KG+ +R S+ + L FI N+ KS K G + + +
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSA- 274
++ D ++G+ FV + A+ + KM N V KS + A
Sbjct: 130 VVCDENG---SKGYGFVHFETQEAAERAIDKMNGMLL----NDRKVFVGRFKSRKEREAE 182
Query: 275 --AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A A + +Y+KN ++ ++LKE+F ++G V +GK + FGF+ +
Sbjct: 183 LGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHE 242
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + +++G+ + V A+ + ++TE
Sbjct: 243 DAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTE 275
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 125/278 (44%), Gaps = 36/278 (12%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
+FI L K + L D G + +V D++ SKG+ FV F ++E A+RAID++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKM 158
Query: 166 C------SKDFKG--KTIRCSMSETNNR------LFIGNVPKSWTEKEFRKVIEDVGPGV 211
K F G K+ + +E R ++I N ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPAL 218
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK---- 267
+++++ D +++GF FV + + A + +M + ++G + V A+ K
Sbjct: 219 -SVKVMTDDNG--KSKGFGFVSFERHEDAQKAVDEMNGKD--MNGKSMFVGRAQKKVERQ 273
Query: 268 -------STPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVT--KVVTPPGKSG 318
Q LYVKNL + ++L++ F G +T KV+ G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRS- 332
Query: 319 KRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356
+ FGF+ ++ A KA+ + + + L VALA+
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 12/129 (9%)
Query: 58 EDQSPGANGSHINTEDAVEDE-DKRTASISEDEK----------EKHDQLLALPPHGSEV 106
E+ S G H T++A E DK + D K E+ +L A + V
Sbjct: 134 ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 193
Query: 107 FIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166
+I D ++E L+++ G V ++ D D+G+SKGF FV+F E A++A+DE+
Sbjct: 194 YIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 167 SKDFKGKTI 175
KD GK++
Sbjct: 253 GKDMNGKSM 261
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 122/274 (44%), Gaps = 14/274 (5%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
PH + +++G L +E L +L IG+V + + +D + S G+A+V + + +R
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+++L KG+ R S+ + L FI N+ + K G +
Sbjct: 112 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 170
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ +D S+ GF ++Y A A + K + D K
Sbjct: 171 SCKVAQDEFGNSKGYGF---VHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSK 227
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGK-RDFGFIHYAER 330
+ +YVKN+ ++TT ++ ++LF++ GE+T + +SGK R FGF+++
Sbjct: 228 FEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSH 287
Query: 331 SSALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
+A A++ + GQ L V A+ + + E
Sbjct: 288 DNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEE 321
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 153/376 (40%), Gaps = 74/376 (19%)
Query: 89 EKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFA 148
+K++ + + + + V++ + +D +EE+ RDL E GE+ L +D +SG+S+GF
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFG 280
Query: 149 FVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSW-TEKEFRKVIEDV 207
FV F S + A A++ L KDFKG+ +L++G K E+E RK E
Sbjct: 281 FVNFTSHDNAAAAVEALNDKDFKGQ-----------KLYVGRAQKKHEREEELRKQYE-- 327
Query: 208 GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKM----------TSANFKLDGN 257
IE Q + LY N D +K+ TSA D
Sbjct: 328 ---AARIEKASKYQGVN--------LYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFA 376
Query: 258 TPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS 317
+ S +E ++ D + + +N K KE + P GKS
Sbjct: 377 PESTSDSEKEAKKDSKEPETKEEEP--KDEAGDNAENKDNKE--NKAESKKSEKKPLGKS 432
Query: 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSG 377
+ FGF+ ++ A KA+ + + + G+ L VALA+ + +R++ S A
Sbjct: 433 --KGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQLEASIQA------ 484
Query: 378 LPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMI-----YGRGQMPAGMHMVPMVLPDGR 432
+ AA AG+ QP + YG GQ +P+ R
Sbjct: 485 --------------RNTIRQQQAAAAAGMPQPFMQPAVFYGPGQQ--------NFIPNQR 522
Query: 433 IGYVLQQPGVQMPLPP 448
G QQPG+ +P P
Sbjct: 523 GGMPFQQPGMVIPGMP 538
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 147/309 (47%), Gaps = 44/309 (14%)
Query: 66 GSHINTEDAVEDEDKRTASISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCE 125
G+ + E A+ + +TA E++KE+ + L F+ +P + E+L+++ E
Sbjct: 299 GTEVKIEKAMAFDKNKTA---ENKKERDSRTL---------FVKNIPYSTTVEELQEIFE 346
Query: 126 PIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC------SM 179
++ + KD G +KG A+V F +++ A +A++E + +G++I S
Sbjct: 347 NAKDI-RIPTGKD---GSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVDFTGEKSQ 402
Query: 180 SETNNR--------LFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAF 231
+ N + L + N+ S TE R+V E I+ PQ R +GFAF
Sbjct: 403 NSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFEKATS-------IRIPQNQGRAKGFAF 455
Query: 232 VLYYNNACADYSRQKMTSAN-FKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPE 290
+ + + A+ ++ M S N +++G + + +++ ++Q K L+V+ L E
Sbjct: 456 IEF---SSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQSKTLFVRGLSE 512
Query: 291 NTTTKQLKELFQRHGEVT-KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQV 349
+TT + LKE F G V ++VT + FGF+ ++ A A + E EIDG
Sbjct: 513 DTTEETLKEAF--DGSVNARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNK 570
Query: 350 LEVALARPQ 358
+ + A+P+
Sbjct: 571 VTLDFAKPK 579
Score = 40.4 bits (93), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 65/317 (20%), Positives = 125/317 (39%), Gaps = 92/317 (29%)
Query: 84 SISEDEKEKHDQLLALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVG--LVKDKDS 141
+I E +K K D G +FIG L S ++ +L + + E F ++D
Sbjct: 217 TIPEAKKTKTD----TASEGLSIFIGNL---NSTKEFDELKDALREFFSKKNLTIQDIRI 269
Query: 142 GESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC--SMSETNNR------------LF 187
G SK F +V F S+E ++A+ +L K G ++ +M+ N+ LF
Sbjct: 270 GNSKKFGYVDFSSEEEVEKAL-KLTGKKILGTEVKIEKAMAFDKNKTAENKKERDSRTLF 328
Query: 188 IGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPS----RNRGFAFVLYYNNACADYS 243
+ N+P S T +E +++ E+ KD + P+ N+G A+V + N A+ +
Sbjct: 329 VKNIPYSTTVEELQEIFENA----------KDIRIPTGKDGSNKGIAYVEFSNEDEANKA 378
Query: 244 RQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALY------------------- 284
++ A +++G ++++
Sbjct: 379 LEEKQGA--EIEG------------------------RSIFVDFTGEKSQNSGNKKGPEG 412
Query: 285 ------VKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338
V NL + T L+E+F++ T + P + + F FI ++ A A+
Sbjct: 413 DSKVLVVNNLSYSATEDSLREVFEK---ATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMD 469
Query: 339 DTEKYEIDGQVLEVALA 355
EI+G+ + + +
Sbjct: 470 SCNNTEIEGRSIRLEFS 486
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 101/411 (24%), Positives = 159/411 (38%), Gaps = 79/411 (19%)
Query: 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165
VFI L + L D G++ + D + G +KG+ FV F S E A AI+ +
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHV 228
Query: 166 CSKDFKGKTIRC--------------SMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGV 211
K + ++ ++I N+ TE+EF + G +
Sbjct: 229 NGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGE-I 287
Query: 212 DTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271
++ L+KD + RGF FV Y N+ CA + ++ +K G V A+ K +
Sbjct: 288 TSLSLVKDQN--DKPRGFGFVNYANHECAQKAVDELNDKEYK--GKKLYVGRAQKKHERE 343
Query: 272 HSAAA-ASQVKA----------LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK- 319
Q+K L++KNL + ++LK F G +T + GK
Sbjct: 344 EELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKS 403
Query: 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAG------- 372
+ FGF+ Y A KA+ + + + G+ L VALA+ + +R++ A
Sbjct: 404 KGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQ 463
Query: 373 --VHPSGLPHAGYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGRGQMPA-------GMHM 423
+G+P YG +TG P+IYG G P GM M
Sbjct: 464 QVAAAAGIPAVQYG----------ATG-----------PLIYGPGGYPIPAAVNGRGMPM 502
Query: 424 VPMVLPDGRIGYVLQQPGVQMPLPPPRPRRVERGPGGRGASSGGSDGSSGR 474
VP G G + PG+ P P PG G ++ G + GR
Sbjct: 503 VP-----GHNGPMPMYPGMPTQFPAGGP-----APGYPGMNARGPVPAQGR 543
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 117/273 (42%), Gaps = 13/273 (4%)
Query: 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKR 160
P + +++G L +E L +L IG V + + +D + S G+A+V F + E ++
Sbjct: 77 PTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEK 136
Query: 161 AIDELCSKDFKGKTIRCSMSETNNRL--------FIGNVPKSWTEKEFRKVIEDVGPGVD 212
A+DEL KG+ R S+ + L FI N+ + K G +
Sbjct: 137 ALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFG-KIL 195
Query: 213 TIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDH 272
+ ++ D ++ GF +A A N K VS E +S +
Sbjct: 196 SCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEA 255
Query: 273 SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERS 331
A + V Y+KNL T ++ +LF + GE+T + ++ K R FGF++YA
Sbjct: 256 LKANFTNV---YIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHE 312
Query: 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKRTE 364
A KA+ + E G+ L V A+ + + E
Sbjct: 313 CAQKAVDELNDKEYKGKKLYVGRAQKKHEREEE 345
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRA 161
G +FI L + +E L+ G + ++ D + G+SKGF FV + + E A +A
Sbjct: 362 QGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKA 420
Query: 162 IDELCSKDFKGKTIRCSMSE 181
+ E+ + GK + ++++
Sbjct: 421 VTEMNQRMLAGKPLYVALAQ 440
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,232,005
Number of Sequences: 539616
Number of extensions: 10107964
Number of successful extensions: 66227
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 1071
Number of HSP's that attempted gapping in prelim test: 41871
Number of HSP's gapped (non-prelim): 16244
length of query: 479
length of database: 191,569,459
effective HSP length: 121
effective length of query: 358
effective length of database: 126,275,923
effective search space: 45206780434
effective search space used: 45206780434
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)