Query 011718
Match_columns 479
No_of_seqs 433 out of 3674
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 04:28:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011718.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011718hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0117 Heterogeneous nuclear 100.0 7.2E-57 1.6E-61 406.3 36.4 332 98-439 78-420 (506)
2 TIGR01648 hnRNP-R-Q heterogene 100.0 6.2E-46 1.3E-50 364.6 39.1 253 100-361 55-310 (578)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6E-45 1.3E-49 352.4 30.5 257 102-360 2-351 (352)
4 TIGR01628 PABP-1234 polyadenyl 100.0 8.9E-44 1.9E-48 363.6 34.0 252 105-361 2-367 (562)
5 KOG0145 RNA-binding protein EL 100.0 2.5E-40 5.4E-45 278.5 23.1 255 102-358 40-358 (360)
6 KOG0148 Apoptosis-promoting RN 100.0 2.6E-39 5.7E-44 274.2 22.5 228 102-362 5-242 (321)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.2E-37 7E-42 306.9 28.7 243 102-359 1-352 (481)
8 KOG0127 Nucleolar protein fibr 100.0 9.8E-37 2.1E-41 282.2 23.2 251 104-359 6-379 (678)
9 TIGR01622 SF-CC1 splicing fact 100.0 1E-35 2.2E-40 297.7 29.1 252 100-358 86-448 (457)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4.9E-35 1.1E-39 291.3 28.8 243 103-358 96-480 (481)
11 TIGR01659 sex-lethal sex-letha 100.0 7.3E-35 1.6E-39 273.4 26.1 173 99-362 103-279 (346)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 9.2E-35 2E-39 295.0 27.4 245 102-357 174-501 (509)
13 TIGR01645 half-pint poly-U bin 100.0 6.6E-34 1.4E-38 280.0 28.3 163 100-266 104-283 (612)
14 KOG0144 RNA-binding protein CU 100.0 1.8E-34 3.8E-39 260.1 19.6 256 102-360 33-506 (510)
15 KOG0123 Polyadenylate-binding 100.0 2.8E-30 6.1E-35 243.5 21.9 243 104-359 2-247 (369)
16 KOG0123 Polyadenylate-binding 100.0 2.7E-30 5.8E-35 243.7 19.9 253 102-362 75-353 (369)
17 KOG0124 Polypyrimidine tract-b 100.0 3.7E-28 8E-33 214.6 17.9 250 102-355 112-532 (544)
18 KOG0127 Nucleolar protein fibr 100.0 1.8E-27 4E-32 220.9 15.8 235 103-340 117-516 (678)
19 TIGR01645 half-pint poly-U bin 99.9 6.2E-26 1.3E-30 223.8 26.4 174 183-360 107-286 (612)
20 KOG0110 RNA-binding protein (R 99.9 4.9E-27 1.1E-31 225.4 18.1 250 101-359 383-694 (725)
21 KOG0147 Transcriptional coacti 99.9 2E-27 4.3E-32 222.1 12.0 250 100-357 176-527 (549)
22 KOG4212 RNA-binding protein hn 99.9 9E-26 1.9E-30 204.1 22.1 144 102-249 43-278 (608)
23 KOG0148 Apoptosis-promoting RN 99.9 1.4E-26 3.1E-31 196.9 15.1 157 103-269 62-240 (321)
24 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2E-24 4.3E-29 209.1 25.7 168 182-360 2-173 (352)
25 KOG4211 Splicing factor hnRNP- 99.9 4E-24 8.8E-29 197.4 25.9 250 100-360 7-360 (510)
26 TIGR01648 hnRNP-R-Q heterogene 99.9 6.3E-24 1.4E-28 209.6 27.8 194 101-306 136-367 (578)
27 TIGR01628 PABP-1234 polyadenyl 99.9 9.2E-24 2E-28 216.3 29.6 162 100-267 175-364 (562)
28 KOG0109 RNA-binding protein LA 99.9 2.1E-25 4.6E-30 191.8 13.6 152 105-363 4-155 (346)
29 KOG0144 RNA-binding protein CU 99.9 1.4E-25 3.1E-30 202.9 12.9 172 184-363 35-211 (510)
30 KOG0117 Heterogeneous nuclear 99.9 1.7E-23 3.6E-28 190.5 25.9 162 182-359 82-249 (506)
31 KOG0131 Splicing factor 3b, su 99.9 2.3E-25 5E-30 178.7 12.2 171 102-362 8-181 (203)
32 KOG4205 RNA-binding protein mu 99.9 3.3E-24 7.1E-29 194.7 20.1 177 102-365 5-183 (311)
33 TIGR01622 SF-CC1 splicing fact 99.9 8.7E-24 1.9E-28 211.7 19.6 173 181-358 87-266 (457)
34 KOG0145 RNA-binding protein EL 99.9 2.3E-23 5E-28 176.2 13.3 171 181-362 39-213 (360)
35 KOG0146 RNA-binding protein ET 99.9 6.7E-22 1.5E-26 168.0 12.7 262 100-362 16-369 (371)
36 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.2E-21 4.8E-26 197.2 18.9 169 180-358 172-375 (509)
37 KOG0110 RNA-binding protein (R 99.9 1.4E-21 3E-26 188.2 14.8 225 99-356 223-596 (725)
38 KOG0124 Polypyrimidine tract-b 99.9 5.5E-21 1.2E-25 169.4 12.6 173 183-359 113-291 (544)
39 KOG1190 Polypyrimidine tract-b 99.8 5.3E-20 1.1E-24 165.8 17.5 247 98-360 23-375 (492)
40 KOG4206 Spliceosomal protein s 99.8 4.8E-19 1E-23 148.8 17.8 209 101-356 7-220 (221)
41 KOG1190 Polypyrimidine tract-b 99.8 1.3E-17 2.8E-22 150.6 19.7 239 104-357 151-490 (492)
42 PLN03134 glycine-rich RNA-bind 99.8 4.3E-18 9.4E-23 139.9 14.3 81 280-360 34-116 (144)
43 KOG1548 Transcription elongati 99.8 7.9E-18 1.7E-22 149.0 15.6 205 99-359 130-353 (382)
44 KOG1365 RNA-binding protein Fu 99.7 4.3E-17 9.4E-22 145.8 15.8 254 100-359 57-363 (508)
45 KOG4211 Splicing factor hnRNP- 99.7 2.1E-16 4.5E-21 146.7 20.4 169 184-361 11-185 (510)
46 PLN03134 glycine-rich RNA-bind 99.7 1E-17 2.2E-22 137.7 10.3 84 100-183 31-114 (144)
47 KOG0105 Alternative splicing f 99.7 4.1E-17 8.8E-22 131.5 13.2 142 101-254 4-177 (241)
48 KOG0120 Splicing factor U2AF, 99.7 6.6E-17 1.4E-21 154.3 15.5 244 102-356 174-490 (500)
49 KOG0147 Transcriptional coacti 99.7 2.9E-17 6.2E-22 154.5 7.9 175 183-362 179-362 (549)
50 KOG1456 Heterogeneous nuclear 99.7 3.6E-15 7.7E-20 133.3 19.3 248 97-360 25-365 (494)
51 KOG1457 RNA binding protein (c 99.7 7.8E-16 1.7E-20 128.0 14.1 229 101-345 32-273 (284)
52 KOG1456 Heterogeneous nuclear 99.6 1E-13 2.2E-18 124.2 21.9 237 108-358 127-491 (494)
53 PF00076 RRM_1: RNA recognitio 99.6 1.5E-15 3.3E-20 109.9 7.7 70 106-176 1-70 (70)
54 KOG0105 Alternative splicing f 99.6 3.8E-14 8.2E-19 114.5 15.5 153 182-346 5-176 (241)
55 KOG0149 Predicted RNA-binding 99.6 1.2E-15 2.7E-20 128.5 7.0 78 103-181 12-89 (247)
56 KOG0121 Nuclear cap-binding pr 99.6 2.6E-15 5.6E-20 113.7 7.9 84 277-360 33-118 (153)
57 KOG0125 Ataxin 2-binding prote 99.6 1.6E-15 3.5E-20 133.5 7.9 83 279-361 95-177 (376)
58 KOG0122 Translation initiation 99.6 2.9E-15 6.3E-20 126.7 8.9 82 102-183 188-269 (270)
59 PF00076 RRM_1: RNA recognitio 99.6 5.6E-15 1.2E-19 106.8 8.4 69 283-351 1-70 (70)
60 KOG0106 Alternative splicing f 99.6 2.4E-15 5.3E-20 128.3 7.1 167 104-355 2-168 (216)
61 TIGR01659 sex-lethal sex-letha 99.6 3.3E-14 7.2E-19 134.1 15.1 80 279-358 106-187 (346)
62 KOG0121 Nuclear cap-binding pr 99.6 4.1E-15 8.9E-20 112.6 6.8 81 101-181 34-114 (153)
63 KOG4207 Predicted splicing fac 99.6 1.2E-14 2.7E-19 119.5 8.9 80 280-359 13-94 (256)
64 PF14259 RRM_6: RNA recognitio 99.6 1.5E-14 3.2E-19 104.4 8.2 70 106-176 1-70 (70)
65 KOG0126 Predicted RNA-binding 99.5 6.4E-16 1.4E-20 124.4 0.3 81 100-180 32-112 (219)
66 PLN03120 nucleic acid binding 99.5 2.8E-14 6.2E-19 125.1 9.6 76 103-182 4-79 (260)
67 PLN03120 nucleic acid binding 99.5 7.3E-14 1.6E-18 122.6 10.3 77 280-358 4-80 (260)
68 KOG0122 Translation initiation 99.5 4.7E-14 1E-18 119.5 8.5 80 279-358 188-269 (270)
69 PF14259 RRM_6: RNA recognitio 99.5 6.1E-14 1.3E-18 101.2 8.1 69 283-351 1-70 (70)
70 KOG0113 U1 small nuclear ribon 99.5 3.9E-14 8.5E-19 123.3 8.1 81 101-181 99-179 (335)
71 KOG0107 Alternative splicing f 99.5 4.1E-14 9E-19 113.6 7.2 77 101-182 8-84 (195)
72 KOG0107 Alternative splicing f 99.5 2E-13 4.4E-18 109.7 10.5 78 280-360 10-87 (195)
73 KOG0114 Predicted RNA-binding 99.5 1.1E-13 2.5E-18 100.7 8.2 81 99-182 14-94 (124)
74 KOG4212 RNA-binding protein hn 99.5 1E-12 2.2E-17 120.2 15.9 175 182-360 43-296 (608)
75 KOG0149 Predicted RNA-binding 99.5 1.1E-13 2.5E-18 116.8 9.0 77 280-357 12-90 (247)
76 COG0724 RNA-binding proteins ( 99.5 3.5E-13 7.5E-18 126.9 13.2 167 103-338 115-285 (306)
77 KOG0114 Predicted RNA-binding 99.5 2.5E-13 5.5E-18 98.9 8.8 78 280-358 18-95 (124)
78 PLN03213 repressor of silencin 99.5 1.2E-13 2.7E-18 127.9 8.9 78 102-183 9-88 (759)
79 KOG4207 Predicted splicing fac 99.5 6.7E-14 1.4E-18 115.2 6.1 83 99-181 9-91 (256)
80 PLN03121 nucleic acid binding 99.5 2.8E-13 6E-18 116.8 9.5 77 101-181 3-79 (243)
81 KOG0130 RNA-binding protein RB 99.5 1.1E-13 2.5E-18 105.7 5.9 83 99-181 68-150 (170)
82 KOG0125 Ataxin 2-binding prote 99.5 1.6E-13 3.4E-18 121.1 7.5 79 103-183 96-174 (376)
83 PLN03213 repressor of silencin 99.4 4.7E-13 1E-17 124.1 9.3 77 280-358 10-88 (759)
84 smart00362 RRM_2 RNA recogniti 99.4 1.1E-12 2.5E-17 95.0 8.4 72 105-178 1-72 (72)
85 KOG0132 RNA polymerase II C-te 99.4 1.9E-11 4.1E-16 119.8 18.6 79 280-362 421-499 (894)
86 PLN03121 nucleic acid binding 99.4 1.7E-12 3.7E-17 112.0 10.0 77 280-358 5-81 (243)
87 smart00362 RRM_2 RNA recogniti 99.4 2.7E-12 5.8E-17 93.0 9.5 72 282-353 1-72 (72)
88 smart00360 RRM RNA recognition 99.4 1.8E-12 3.8E-17 93.6 8.2 71 108-178 1-71 (71)
89 KOG0113 U1 small nuclear ribon 99.4 6.6E-12 1.4E-16 109.6 12.3 82 280-361 101-184 (335)
90 KOG0128 RNA-binding protein SA 99.4 1.5E-13 3.3E-18 135.9 2.1 231 102-361 570-818 (881)
91 KOG0111 Cyclophilin-type pepti 99.4 6.9E-13 1.5E-17 110.3 5.3 84 101-184 8-91 (298)
92 KOG0111 Cyclophilin-type pepti 99.4 7.3E-13 1.6E-17 110.1 5.1 84 279-362 9-94 (298)
93 KOG0130 RNA-binding protein RB 99.3 2.1E-12 4.5E-17 98.9 6.7 83 278-360 70-154 (170)
94 KOG1365 RNA-binding protein Fu 99.3 3.1E-12 6.7E-17 115.1 8.8 143 103-249 161-346 (508)
95 KOG0132 RNA polymerase II C-te 99.3 4.7E-11 1E-15 117.1 17.1 76 101-182 419-494 (894)
96 cd00590 RRM RRM (RNA recogniti 99.3 9.8E-12 2.1E-16 90.5 9.4 74 105-179 1-74 (74)
97 KOG0108 mRNA cleavage and poly 99.3 3.2E-12 7E-17 122.1 8.2 79 104-182 19-97 (435)
98 cd00590 RRM RRM (RNA recogniti 99.3 1.4E-11 3E-16 89.7 9.8 73 282-354 1-74 (74)
99 PF13893 RRM_5: RNA recognitio 99.3 1.1E-11 2.4E-16 84.7 8.3 56 297-355 1-56 (56)
100 KOG0126 Predicted RNA-binding 99.3 5.9E-13 1.3E-17 107.5 1.1 78 280-357 35-114 (219)
101 KOG0131 Splicing factor 3b, su 99.3 5.1E-12 1.1E-16 102.4 5.9 77 280-356 9-87 (203)
102 smart00360 RRM RNA recognition 99.3 1.8E-11 3.8E-16 88.3 8.4 69 285-353 1-71 (71)
103 KOG4307 RNA binding protein RB 99.3 2.6E-11 5.7E-16 117.1 11.7 166 184-355 312-511 (944)
104 smart00361 RRM_1 RNA recogniti 99.2 3E-11 6.5E-16 86.6 7.2 61 117-177 2-69 (70)
105 KOG4307 RNA binding protein RB 99.2 4.8E-10 1E-14 108.6 17.4 158 101-264 309-511 (944)
106 KOG0116 RasGAP SH3 binding pro 99.2 1.1E-10 2.5E-15 110.8 12.1 80 281-361 289-370 (419)
107 PF13893 RRM_5: RNA recognitio 99.2 3.2E-11 7E-16 82.4 6.1 56 120-180 1-56 (56)
108 KOG0109 RNA-binding protein LA 99.2 2.3E-11 5E-16 105.8 6.3 73 281-359 3-75 (346)
109 KOG4660 Protein Mei2, essentia 99.2 9E-11 1.9E-15 111.5 10.1 73 100-177 72-144 (549)
110 KOG0129 Predicted RNA-binding 99.2 3.4E-10 7.3E-15 106.8 13.2 171 98-339 254-432 (520)
111 KOG4210 Nuclear localization s 99.2 1.5E-10 3.3E-15 105.8 9.9 179 101-361 86-267 (285)
112 smart00361 RRM_1 RNA recogniti 99.2 1.3E-10 2.9E-15 83.2 7.4 60 294-353 2-70 (70)
113 KOG0108 mRNA cleavage and poly 99.2 1.8E-10 3.8E-15 110.3 10.3 82 281-362 19-102 (435)
114 KOG0415 Predicted peptidyl pro 99.1 4.4E-11 9.5E-16 106.7 5.2 88 98-185 234-321 (479)
115 COG0724 RNA-binding proteins ( 99.1 2.2E-10 4.8E-15 107.7 10.0 78 280-357 115-194 (306)
116 KOG0146 RNA-binding protein ET 99.1 7.1E-11 1.5E-15 101.4 5.8 87 97-183 279-365 (371)
117 KOG4454 RNA binding protein (R 99.1 2.2E-11 4.7E-16 101.6 2.1 137 100-248 6-146 (267)
118 KOG4206 Spliceosomal protein s 99.1 3.9E-10 8.4E-15 95.5 7.7 81 280-361 9-93 (221)
119 KOG4661 Hsp27-ERE-TATA-binding 99.1 3.3E-10 7.1E-15 107.2 7.8 84 99-182 401-484 (940)
120 KOG0112 Large RNA-binding prot 99.1 1.5E-10 3.2E-15 115.6 5.2 166 98-361 367-534 (975)
121 KOG0120 Splicing factor U2AF, 99.1 6.3E-10 1.4E-14 107.1 9.3 162 100-264 286-489 (500)
122 KOG0415 Predicted peptidyl pro 99.0 2.3E-10 5E-15 102.2 5.7 82 279-360 238-321 (479)
123 KOG4208 Nucleolar RNA-binding 99.0 1.1E-09 2.4E-14 91.1 7.9 83 100-182 46-129 (214)
124 KOG4661 Hsp27-ERE-TATA-binding 98.9 2.5E-09 5.3E-14 101.4 7.4 78 280-357 405-484 (940)
125 KOG0153 Predicted RNA-binding 98.9 6.1E-09 1.3E-13 93.4 8.5 75 279-357 227-302 (377)
126 KOG0153 Predicted RNA-binding 98.9 3.6E-09 7.9E-14 94.7 7.2 78 99-182 224-302 (377)
127 KOG4208 Nucleolar RNA-binding 98.9 5.6E-09 1.2E-13 87.0 7.3 79 280-358 49-130 (214)
128 KOG0128 RNA-binding protein SA 98.8 1.9E-10 4.2E-15 114.3 -2.6 134 101-248 665-798 (881)
129 KOG4849 mRNA cleavage factor I 98.8 8.7E-08 1.9E-12 85.8 13.6 75 280-354 80-158 (498)
130 KOG1457 RNA binding protein (c 98.8 5E-08 1.1E-12 82.0 9.8 84 280-363 34-123 (284)
131 KOG0533 RRM motif-containing p 98.7 4.3E-08 9.3E-13 86.3 8.4 81 101-182 81-161 (243)
132 KOG0533 RRM motif-containing p 98.7 4.7E-08 1E-12 86.0 8.3 82 280-361 83-165 (243)
133 KOG4205 RNA-binding protein mu 98.7 1.3E-08 2.8E-13 93.4 5.0 82 102-184 96-177 (311)
134 PF04059 RRM_2: RNA recognitio 98.7 2.1E-07 4.6E-12 69.7 9.3 78 104-181 2-85 (97)
135 KOG4676 Splicing factor, argin 98.7 4.5E-09 9.7E-14 95.4 0.4 207 104-352 8-220 (479)
136 KOG3152 TBP-binding protein, a 98.6 4.1E-08 8.9E-13 84.4 5.1 74 102-175 73-158 (278)
137 KOG0226 RNA-binding proteins [ 98.6 3.6E-08 7.7E-13 84.7 4.7 80 280-359 190-271 (290)
138 KOG1548 Transcription elongati 98.6 1.2E-07 2.5E-12 85.2 7.8 79 280-358 134-221 (382)
139 PF11608 Limkain-b1: Limkain b 98.6 2.2E-07 4.7E-12 65.8 7.4 71 104-184 3-78 (90)
140 KOG4454 RNA binding protein (R 98.6 1.8E-08 4E-13 84.3 2.4 134 181-340 7-145 (267)
141 KOG0116 RasGAP SH3 binding pro 98.6 7.5E-08 1.6E-12 91.9 6.5 78 102-180 287-364 (419)
142 KOG4209 Splicing factor RNPS1, 98.6 9.2E-08 2E-12 84.6 6.2 80 101-181 99-178 (231)
143 PF11608 Limkain-b1: Limkain b 98.6 4.2E-07 9.1E-12 64.4 7.6 70 281-358 3-77 (90)
144 KOG0106 Alternative splicing f 98.5 1.2E-07 2.7E-12 81.5 5.8 74 281-360 2-75 (216)
145 KOG0226 RNA-binding proteins [ 98.5 8.4E-08 1.8E-12 82.4 4.6 81 101-181 188-268 (290)
146 KOG2193 IGF-II mRNA-binding pr 98.5 2.5E-08 5.4E-13 91.5 1.1 158 184-360 2-159 (584)
147 KOG0151 Predicted splicing reg 98.5 2.4E-07 5.2E-12 90.7 7.4 82 100-181 171-255 (877)
148 KOG4849 mRNA cleavage factor I 98.5 6.7E-06 1.4E-10 74.0 15.6 78 102-179 79-158 (498)
149 PF04059 RRM_2: RNA recognitio 98.5 8E-07 1.7E-11 66.6 8.2 78 281-358 2-87 (97)
150 KOG4660 Protein Mei2, essentia 98.4 2.2E-07 4.7E-12 88.9 3.4 69 280-351 75-143 (549)
151 KOG1995 Conserved Zn-finger pr 98.4 1.1E-06 2.4E-11 79.9 7.7 84 277-360 63-156 (351)
152 KOG4209 Splicing factor RNPS1, 98.3 1.3E-06 2.7E-11 77.4 7.1 79 279-358 100-180 (231)
153 KOG1995 Conserved Zn-finger pr 98.3 6.4E-07 1.4E-11 81.4 4.8 83 102-184 65-155 (351)
154 KOG0151 Predicted splicing reg 98.3 1.6E-06 3.5E-11 85.1 7.2 83 277-359 171-258 (877)
155 PF08777 RRM_3: RNA binding mo 98.3 1.7E-06 3.8E-11 66.6 5.4 71 281-355 2-77 (105)
156 PF08777 RRM_3: RNA binding mo 98.1 6.1E-06 1.3E-10 63.6 6.3 60 103-168 1-60 (105)
157 COG5175 MOT2 Transcriptional r 97.9 1.6E-05 3.5E-10 71.3 5.9 89 102-190 113-211 (480)
158 KOG1855 Predicted RNA-binding 97.9 0.00027 5.8E-09 65.9 12.7 66 278-343 229-309 (484)
159 COG5175 MOT2 Transcriptional r 97.8 5.4E-05 1.2E-09 68.0 6.7 79 280-358 114-203 (480)
160 KOG4210 Nuclear localization s 97.8 1.8E-05 3.8E-10 72.8 3.4 81 102-183 183-264 (285)
161 KOG2193 IGF-II mRNA-binding pr 97.7 1.1E-05 2.4E-10 74.5 1.0 144 105-263 3-153 (584)
162 PF14605 Nup35_RRM_2: Nup53/35 97.7 8.8E-05 1.9E-09 49.2 4.8 52 104-162 2-53 (53)
163 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00016 3.4E-09 48.0 5.5 52 281-337 2-53 (53)
164 KOG2314 Translation initiation 97.6 0.0002 4.4E-09 68.9 8.1 76 280-355 58-141 (698)
165 KOG0115 RNA-binding protein p5 97.6 0.00017 3.8E-09 62.6 6.7 90 158-251 7-96 (275)
166 KOG2416 Acinus (induces apopto 97.6 0.00011 2.5E-09 71.0 6.0 78 99-182 440-521 (718)
167 KOG3152 TBP-binding protein, a 97.4 6.8E-05 1.5E-09 65.1 2.2 69 281-349 75-157 (278)
168 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00098 2.1E-08 50.5 8.2 75 280-356 6-90 (100)
169 KOG0115 RNA-binding protein p5 97.4 0.0011 2.3E-08 57.9 8.9 105 238-358 5-114 (275)
170 KOG1855 Predicted RNA-binding 97.4 0.00014 3E-09 67.8 3.5 66 102-167 230-308 (484)
171 KOG1924 RhoA GTPase effector D 97.3 0.0014 3E-08 65.9 9.9 15 153-167 207-221 (1102)
172 KOG2202 U2 snRNP splicing fact 97.3 9.8E-05 2.1E-09 64.3 1.7 62 119-181 84-146 (260)
173 PF08952 DUF1866: Domain of un 97.3 0.0015 3.3E-08 52.5 7.7 57 295-358 51-107 (146)
174 KOG0129 Predicted RNA-binding 97.3 0.001 2.2E-08 63.9 7.8 66 99-164 366-432 (520)
175 KOG2314 Translation initiation 97.2 0.00089 1.9E-08 64.7 6.6 78 101-179 56-140 (698)
176 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.001 2.2E-08 50.4 5.5 76 103-180 6-89 (100)
177 KOG1924 RhoA GTPase effector D 97.1 0.0026 5.6E-08 64.0 9.6 11 117-127 85-95 (1102)
178 KOG2202 U2 snRNP splicing fact 97.1 0.00027 5.8E-09 61.7 2.0 64 295-358 83-148 (260)
179 KOG1996 mRNA splicing factor [ 97.0 0.0018 3.9E-08 57.4 6.7 63 294-356 300-365 (378)
180 KOG3973 Uncharacterized conser 97.0 0.0068 1.5E-07 55.1 9.9 9 402-410 380-388 (465)
181 KOG4676 Splicing factor, argin 96.9 0.0014 3.1E-08 60.5 5.3 77 281-358 8-89 (479)
182 PF08952 DUF1866: Domain of un 96.8 0.0026 5.7E-08 51.2 5.3 78 96-182 20-106 (146)
183 KOG2318 Uncharacterized conser 96.7 0.0056 1.2E-07 59.7 7.7 76 98-173 169-296 (650)
184 KOG1996 mRNA splicing factor [ 96.6 0.0046 1E-07 54.9 5.9 63 117-179 300-363 (378)
185 KOG2416 Acinus (induces apopto 96.6 0.002 4.2E-08 62.8 3.7 80 277-360 441-524 (718)
186 KOG2236 Uncharacterized conser 96.5 0.21 4.6E-06 47.9 16.3 28 199-241 246-273 (483)
187 KOG3973 Uncharacterized conser 96.4 0.039 8.5E-07 50.4 10.7 11 188-198 154-164 (465)
188 KOG0112 Large RNA-binding prot 96.3 0.0015 3.4E-08 66.7 1.3 81 277-357 369-450 (975)
189 PF03467 Smg4_UPF3: Smg-4/UPF3 96.0 0.0059 1.3E-07 52.1 3.3 72 102-173 6-83 (176)
190 PF10309 DUF2414: Protein of u 96.0 0.034 7.3E-07 37.8 6.2 54 281-340 6-62 (62)
191 KOG1999 RNA polymerase II tran 95.9 0.029 6.3E-07 58.4 8.0 29 143-171 208-236 (1024)
192 KOG2591 c-Mpl binding protein, 95.9 0.46 9.9E-06 46.6 15.3 71 280-355 175-249 (684)
193 KOG2135 Proteins containing th 95.7 0.0072 1.6E-07 57.5 2.8 76 279-359 371-447 (526)
194 PF10309 DUF2414: Protein of u 95.6 0.055 1.2E-06 36.8 6.0 52 105-165 7-62 (62)
195 PF15023 DUF4523: Protein of u 95.4 0.076 1.6E-06 42.2 7.0 74 99-180 82-159 (166)
196 PF07576 BRAP2: BRCA1-associat 95.2 0.19 4.1E-06 39.0 8.7 75 281-355 14-92 (110)
197 PF08675 RNA_bind: RNA binding 95.2 0.087 1.9E-06 37.9 6.1 54 105-166 10-63 (87)
198 PF15023 DUF4523: Protein of u 95.0 0.084 1.8E-06 42.0 6.1 72 280-357 86-161 (166)
199 PF04847 Calcipressin: Calcipr 95.0 0.084 1.8E-06 45.2 6.7 63 293-359 8-72 (184)
200 PF07576 BRAP2: BRCA1-associat 94.9 0.29 6.3E-06 38.0 8.7 66 105-172 15-81 (110)
201 KOG2068 MOT2 transcription fac 94.8 0.013 2.8E-07 53.7 1.4 82 102-183 76-163 (327)
202 KOG2068 MOT2 transcription fac 94.8 0.01 2.2E-07 54.4 0.6 79 281-359 78-164 (327)
203 PF04931 DNA_pol_phi: DNA poly 94.8 0.027 6E-07 60.4 3.9 6 120-125 741-746 (784)
204 KOG4285 Mitotic phosphoprotein 94.7 0.16 3.4E-06 45.8 7.7 77 281-363 198-275 (350)
205 KOG2135 Proteins containing th 94.6 0.019 4.1E-07 54.7 1.9 76 102-184 371-447 (526)
206 PF03467 Smg4_UPF3: Smg-4/UPF3 94.6 0.088 1.9E-06 45.0 5.8 78 280-357 7-97 (176)
207 KOG2591 c-Mpl binding protein, 94.0 0.18 3.9E-06 49.3 7.1 99 155-261 147-246 (684)
208 PF04147 Nop14: Nop14-like fam 93.8 0.094 2E-06 56.4 5.5 13 116-128 427-439 (840)
209 PF03880 DbpA: DbpA RNA bindin 93.3 0.53 1.2E-05 33.7 7.1 59 290-355 11-74 (74)
210 KOG0804 Cytoplasmic Zn-finger 93.1 0.29 6.2E-06 46.8 6.7 71 100-172 71-142 (493)
211 PF10567 Nab6_mRNP_bdg: RNA-re 93.0 2.9 6.4E-05 37.9 12.5 159 183-343 15-214 (309)
212 PRK11634 ATP-dependent RNA hel 92.9 1.5 3.3E-05 45.8 12.5 63 289-358 496-563 (629)
213 PF08675 RNA_bind: RNA binding 92.7 0.38 8.3E-06 34.7 5.3 55 281-342 10-64 (87)
214 KOG0804 Cytoplasmic Zn-finger 92.4 0.28 6.1E-06 46.8 5.7 68 280-347 74-142 (493)
215 PF05285 SDA1: SDA1; InterPro 92.4 0.13 2.9E-06 48.6 3.7 8 115-122 190-197 (324)
216 KOG2253 U1 snRNP complex, subu 92.1 0.083 1.8E-06 52.8 2.0 72 277-355 37-108 (668)
217 PF04847 Calcipressin: Calcipr 92.1 0.22 4.7E-06 42.7 4.3 60 116-181 8-69 (184)
218 KOG4285 Mitotic phosphoprotein 92.1 0.46 9.9E-06 42.9 6.3 71 103-181 197-268 (350)
219 KOG4574 RNA-binding protein (c 91.7 0.1 2.2E-06 53.6 2.1 70 106-181 301-372 (1007)
220 KOG4574 RNA-binding protein (c 91.5 0.13 2.9E-06 52.8 2.6 76 282-361 300-377 (1007)
221 PF03880 DbpA: DbpA RNA bindin 90.4 1.1 2.4E-05 32.0 5.9 58 114-180 12-74 (74)
222 KOG2253 U1 snRNP complex, subu 90.0 0.2 4.3E-06 50.2 2.3 71 100-179 37-107 (668)
223 PF11767 SET_assoc: Histone ly 89.7 2.2 4.7E-05 29.6 6.6 55 291-352 11-65 (66)
224 KOG2236 Uncharacterized conser 89.7 8.9 0.00019 37.3 12.7 8 106-113 187-194 (483)
225 KOG4483 Uncharacterized conser 89.1 0.9 1.9E-05 42.7 5.6 55 103-164 391-446 (528)
226 KOG1999 RNA polymerase II tran 88.2 0.37 8.1E-06 50.6 2.9 16 288-303 447-462 (1024)
227 PF07292 NID: Nmi/IFP 35 domai 86.6 0.65 1.4E-05 34.2 2.6 57 148-204 1-73 (88)
228 KOG2038 CAATT-binding transcri 85.3 0.83 1.8E-05 46.9 3.4 18 107-124 959-976 (988)
229 COG5638 Uncharacterized conser 84.9 2.5 5.5E-05 39.9 6.1 40 100-139 143-187 (622)
230 KOG4019 Calcineurin-mediated s 84.4 1.1 2.3E-05 37.5 3.1 77 281-361 11-93 (193)
231 KOG2318 Uncharacterized conser 84.0 3.8 8.2E-05 40.8 7.1 75 280-354 174-304 (650)
232 PF11767 SET_assoc: Histone ly 83.5 4.9 0.00011 27.9 5.6 55 114-177 11-65 (66)
233 PF05285 SDA1: SDA1; InterPro 83.3 0.67 1.5E-05 43.9 1.8 7 195-201 231-237 (324)
234 KOG0526 Nucleosome-binding fac 82.8 0.43 9.4E-06 46.6 0.3 8 115-122 549-556 (615)
235 KOG2141 Protein involved in hi 82.6 1.1 2.4E-05 45.7 3.1 25 323-347 624-648 (822)
236 TIGR02542 B_forsyth_147 Bacter 82.1 6.9 0.00015 30.0 6.3 107 110-237 10-129 (145)
237 PF02724 CDC45: CDC45-like pro 81.8 0.94 2E-05 47.1 2.4 13 236-248 400-412 (622)
238 KOG2141 Protein involved in hi 81.6 1.4 3.1E-05 45.0 3.4 13 288-300 552-564 (822)
239 KOG4264 Nucleo-cytoplasmic pro 78.6 1.9 4E-05 42.2 3.0 17 148-164 212-228 (694)
240 COG5593 Nucleic-acid-binding p 76.2 1.7 3.6E-05 42.7 2.0 19 106-124 801-819 (821)
241 PF07292 NID: Nmi/IFP 35 domai 75.4 1.8 4E-05 31.9 1.6 71 230-301 1-73 (88)
242 COG4547 CobT Cobalamin biosynt 75.3 3.8 8.2E-05 39.7 4.0 11 169-179 425-435 (620)
243 PF02724 CDC45: CDC45-like pro 73.2 2.2 4.7E-05 44.5 2.1 15 234-248 395-409 (622)
244 COG4907 Predicted membrane pro 72.3 3.5 7.5E-05 39.9 3.0 7 297-303 491-497 (595)
245 PHA03169 hypothetical protein; 72.2 29 0.00062 32.8 8.7 14 228-241 366-379 (413)
246 KOG2891 Surface glycoprotein [ 72.2 1.9 4E-05 38.5 1.1 69 102-170 148-247 (445)
247 TIGR01651 CobT cobaltochelatas 72.1 4.8 0.0001 40.8 4.1 14 103-116 295-308 (600)
248 PF10567 Nab6_mRNP_bdg: RNA-re 71.6 5.8 0.00013 36.1 4.1 147 102-248 14-212 (309)
249 KOG2295 C2H2 Zn-finger protein 71.6 0.79 1.7E-05 45.1 -1.4 72 102-173 230-301 (648)
250 KOG2773 Apoptosis antagonizing 70.8 4.5 9.8E-05 39.1 3.4 9 289-297 390-398 (483)
251 KOG0262 RNA polymerase I, larg 70.1 9.2 0.0002 41.9 5.7 13 109-121 1447-1459(1640)
252 COG4547 CobT Cobalamin biosynt 69.6 5 0.00011 38.9 3.4 10 199-208 440-449 (620)
253 PF03468 XS: XS domain; Inter 69.5 2.4 5.2E-05 33.3 1.1 50 281-331 9-67 (116)
254 KOG4213 RNA-binding protein La 69.0 5.9 0.00013 33.2 3.3 56 104-164 112-169 (205)
255 PF09073 BUD22: BUD22; InterP 68.9 3.7 8E-05 40.8 2.6 6 157-162 322-327 (432)
256 PF07530 PRE_C2HC: Associated 68.1 6.6 0.00014 27.5 3.0 63 118-183 2-65 (68)
257 PF02714 DUF221: Domain of unk 67.9 11 0.00024 35.8 5.6 56 148-205 1-56 (325)
258 KOG4410 5-formyltetrahydrofola 67.6 13 0.00029 33.5 5.4 60 100-165 327-394 (396)
259 KOG2375 Protein interacting wi 66.1 32 0.0007 36.2 8.5 6 150-155 297-302 (756)
260 KOG0262 RNA polymerase I, larg 65.4 4.8 0.0001 43.9 2.6 14 295-308 1540-1553(1640)
261 PRK14548 50S ribosomal protein 65.0 22 0.00047 26.1 5.2 56 283-339 23-80 (84)
262 TIGR03636 L23_arch archaeal ri 64.5 24 0.00053 25.3 5.3 57 282-339 15-73 (77)
263 KOG4410 5-formyltetrahydrofola 62.2 10 0.00022 34.2 3.7 47 281-330 331-377 (396)
264 PF05918 API5: Apoptosis inhib 61.1 2.7 5.9E-05 42.5 0.0 14 150-163 234-247 (556)
265 PF05918 API5: Apoptosis inhib 61.0 2.7 6E-05 42.5 0.0 10 350-359 457-466 (556)
266 PF14111 DUF4283: Domain of un 61.0 21 0.00046 29.4 5.4 43 282-324 106-149 (153)
267 KOG4365 Uncharacterized conser 60.8 1.9 4.1E-05 41.2 -1.1 77 104-181 4-80 (572)
268 TIGR01651 CobT cobaltochelatas 59.6 7.3 0.00016 39.5 2.6 8 295-302 543-550 (600)
269 smart00596 PRE_C2HC PRE_C2HC d 59.4 12 0.00027 26.0 2.9 63 118-183 2-65 (69)
270 COG5178 PRP8 U5 snRNP spliceos 58.0 8.3 0.00018 41.9 2.8 19 431-451 14-32 (2365)
271 KOG2295 C2H2 Zn-finger protein 57.8 3.1 6.8E-05 41.1 -0.2 72 280-351 231-304 (648)
272 PRK14548 50S ribosomal protein 57.2 34 0.00074 25.1 5.1 57 106-165 23-81 (84)
273 PF15513 DUF4651: Domain of un 57.0 24 0.00053 24.0 3.9 21 295-315 9-29 (62)
274 PF07530 PRE_C2HC: Associated 56.8 37 0.0008 23.8 5.0 61 295-358 2-65 (68)
275 PF03468 XS: XS domain; Inter 56.6 13 0.00027 29.3 3.0 55 105-162 10-74 (116)
276 KOG1902 Putative signal transd 56.6 97 0.0021 29.1 8.9 15 195-209 99-113 (441)
277 KOG4019 Calcineurin-mediated s 56.5 8.9 0.00019 32.3 2.2 74 104-183 11-90 (193)
278 KOG1902 Putative signal transd 54.4 1.2E+02 0.0026 28.5 9.1 10 118-127 102-111 (441)
279 KOG1295 Nonsense-mediated deca 53.8 15 0.00033 34.9 3.5 69 102-170 6-77 (376)
280 PF12782 Innate_immun: Inverte 53.2 1.5E+02 0.0032 25.6 9.2 6 333-338 13-18 (311)
281 TIGR03636 L23_arch archaeal ri 52.2 49 0.0011 23.8 5.1 57 105-164 15-73 (77)
282 PHA03169 hypothetical protein; 51.9 32 0.00069 32.5 5.2 10 199-208 302-311 (413)
283 smart00596 PRE_C2HC PRE_C2HC d 51.6 40 0.00088 23.5 4.4 61 295-358 2-65 (69)
284 KOG4483 Uncharacterized conser 49.5 29 0.00062 33.1 4.6 55 280-339 391-446 (528)
285 KOG4008 rRNA processing protei 48.7 13 0.00028 32.7 2.1 36 98-133 35-70 (261)
286 KOG4213 RNA-binding protein La 48.3 32 0.00069 29.0 4.2 55 281-339 112-169 (205)
287 KOG1980 Uncharacterized conser 48.1 4.3 9.2E-05 41.1 -1.0 17 119-135 466-482 (754)
288 COG5193 LHP1 La protein, small 45.7 10 0.00023 36.1 1.2 62 102-163 173-244 (438)
289 TIGR00927 2A1904 K+-dependent 45.4 13 0.00028 40.0 1.9 11 104-114 905-915 (1096)
290 KOG4672 Uncharacterized conser 45.1 81 0.0018 30.4 6.8 17 115-131 47-63 (487)
291 KOG3130 Uncharacterized conser 43.6 15 0.00032 35.0 1.8 20 107-126 354-373 (514)
292 KOG1060 Vesicle coat complex A 43.4 30 0.00064 36.4 4.0 9 148-156 772-780 (968)
293 TIGR00927 2A1904 K+-dependent 43.0 15 0.00033 39.6 2.0 8 146-153 932-939 (1096)
294 PF03896 TRAP_alpha: Transloco 42.4 14 0.00031 34.1 1.5 17 281-297 192-208 (285)
295 KOG4365 Uncharacterized conser 42.3 4.6 9.9E-05 38.8 -1.7 77 281-358 4-82 (572)
296 PF11823 DUF3343: Protein of u 41.9 97 0.0021 21.8 5.5 24 146-169 2-25 (73)
297 PF00403 HMA: Heavy-metal-asso 40.7 1.1E+02 0.0024 20.4 6.4 54 282-339 1-58 (62)
298 COG1512 Beta-propeller domains 40.4 30 0.00065 31.8 3.2 31 174-204 102-133 (271)
299 KOG1295 Nonsense-mediated deca 40.2 37 0.00079 32.4 3.8 64 281-344 8-76 (376)
300 cd04889 ACT_PDH-BS-like C-term 39.2 1E+02 0.0023 19.9 5.1 43 294-337 12-55 (56)
301 KOG2192 PolyC-binding hnRNP-K 37.8 77 0.0017 28.5 5.2 20 447-466 282-301 (390)
302 KOG0338 ATP-dependent RNA heli 37.6 14 0.0003 36.7 0.7 19 184-202 283-301 (691)
303 PRK10629 EnvZ/OmpR regulon mod 37.4 1.7E+02 0.0037 23.4 6.7 69 282-356 37-109 (127)
304 KOG1676 K-homology type RNA bi 37.4 4.5E+02 0.0098 27.1 10.9 42 295-338 338-381 (600)
305 PF03276 Gag_spuma: Spumavirus 37.3 4.6E+02 0.01 26.7 13.1 10 342-351 427-436 (582)
306 KOG4264 Nucleo-cytoplasmic pro 36.9 24 0.00051 35.0 2.1 9 322-330 443-451 (694)
307 PF02714 DUF221: Domain of unk 36.5 38 0.00082 32.2 3.5 35 323-359 1-35 (325)
308 KOG2147 Nucleolar protein invo 35.7 50 0.0011 34.5 4.2 18 111-128 388-409 (823)
309 KOG0772 Uncharacterized conser 35.4 21 0.00046 35.3 1.5 20 97-116 173-192 (641)
310 KOG4008 rRNA processing protei 33.9 32 0.00069 30.4 2.2 32 280-311 40-71 (261)
311 PF14026 DUF4242: Protein of u 33.5 1.8E+02 0.0039 20.8 6.9 60 283-343 3-69 (77)
312 cd04908 ACT_Bt0572_1 N-termina 33.3 1.6E+02 0.0034 20.0 7.9 45 293-339 14-59 (66)
313 KOG3130 Uncharacterized conser 32.6 61 0.0013 31.1 3.9 7 148-154 370-376 (514)
314 KOG0338 ATP-dependent RNA heli 31.8 21 0.00046 35.5 0.9 15 148-162 255-269 (691)
315 PF03896 TRAP_alpha: Transloco 31.3 30 0.00066 32.0 1.8 6 105-110 86-91 (285)
316 COG5638 Uncharacterized conser 31.0 1.3E+02 0.0029 28.9 5.9 34 279-312 145-183 (622)
317 KOG2192 PolyC-binding hnRNP-K 31.0 3.6E+02 0.0077 24.5 8.1 15 334-348 185-199 (390)
318 PTZ00191 60S ribosomal protein 30.4 1.6E+02 0.0034 24.2 5.5 55 283-338 84-140 (145)
319 PF07423 DUF1510: Protein of u 28.4 50 0.0011 29.2 2.5 9 116-124 151-159 (217)
320 KOG0650 WD40 repeat nucleolar 27.9 86 0.0019 32.0 4.3 11 105-115 120-130 (733)
321 KOG4761 Proteasome formation i 27.1 4.7E+02 0.01 23.5 9.6 8 327-334 131-138 (266)
322 PF11823 DUF3343: Protein of u 26.9 74 0.0016 22.4 2.8 28 321-348 2-29 (73)
323 KOG2393 Transcription initiati 26.6 68 0.0015 32.2 3.3 9 344-352 538-546 (555)
324 PF08734 GYD: GYD domain; Int 26.0 2.8E+02 0.006 20.6 5.9 46 294-341 22-68 (91)
325 KOG0156 Cytochrome P450 CYP2 s 25.7 1E+02 0.0022 31.3 4.6 64 102-175 31-97 (489)
326 KOG2891 Surface glycoprotein [ 25.6 59 0.0013 29.3 2.5 34 281-314 150-195 (445)
327 PF05470 eIF-3c_N: Eukaryotic 25.5 48 0.001 34.4 2.2 12 329-340 515-526 (595)
328 KOG3915 Transcription regulato 25.5 61 0.0013 31.7 2.7 57 418-474 30-86 (641)
329 KOG0468 U5 snRNP-specific prot 25.2 1.9E+02 0.004 30.4 6.1 38 106-143 103-141 (971)
330 PF07423 DUF1510: Protein of u 24.8 66 0.0014 28.5 2.6 13 155-167 152-164 (217)
331 KOG1747 Protein tyrosine kinas 24.7 4.2E+02 0.0091 24.8 7.6 52 150-203 175-226 (342)
332 PTZ00191 60S ribosomal protein 24.5 1.9E+02 0.0041 23.8 4.9 54 106-162 84-139 (145)
333 PRK06958 single-stranded DNA-b 24.4 4.6E+02 0.01 22.6 7.7 7 296-302 65-71 (182)
334 PF08544 GHMP_kinases_C: GHMP 23.6 2.7E+02 0.0058 19.8 5.5 44 295-341 37-80 (85)
335 cd04904 ACT_AAAH ACT domain of 23.6 2.7E+02 0.0058 19.5 6.1 50 293-342 13-65 (74)
336 KOG3540 Beta amyloid precursor 23.5 55 0.0012 32.2 2.0 23 320-342 580-602 (615)
337 KOG0608 Warts/lats-like serine 23.5 5.7E+02 0.012 27.0 9.0 15 440-454 262-276 (1034)
338 PF05470 eIF-3c_N: Eukaryotic 23.3 56 0.0012 33.9 2.2 13 152-164 276-288 (595)
339 PF04026 SpoVG: SpoVG; InterP 23.1 1.7E+02 0.0037 21.5 4.1 26 129-154 2-27 (84)
340 PRK11230 glycolate oxidase sub 22.6 3.7E+02 0.0081 27.4 7.9 50 117-167 203-256 (499)
341 KOG0296 Angio-associated migra 22.3 36 0.00078 32.2 0.6 10 184-193 170-179 (399)
342 COG5193 LHP1 La protein, small 22.1 40 0.00086 32.4 0.8 58 281-338 175-244 (438)
343 PF11411 DNA_ligase_IV: DNA li 21.3 62 0.0013 19.3 1.2 16 113-128 19-34 (36)
344 KOG2199 Signal transducing ada 20.8 4.6E+02 0.0099 25.6 7.3 9 238-246 167-175 (462)
345 PRK12766 50S ribosomal protein 20.4 35 0.00076 30.3 0.1 14 340-353 215-228 (232)
346 cd04882 ACT_Bt0572_2 C-termina 20.3 2.7E+02 0.0058 18.3 5.6 45 295-339 14-59 (65)
347 cd04880 ACT_AAAH-PDT-like ACT 20.2 3.1E+02 0.0067 19.0 5.6 49 293-341 12-65 (75)
348 PF06682 DUF1183: Protein of u 20.2 7.5E+02 0.016 23.5 8.9 7 321-327 114-120 (318)
No 1
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=7.2e-57 Score=406.26 Aligned_cols=332 Identities=40% Similarity=0.669 Sum_probs=276.2
Q ss_pred CCCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCC-CCCeee
Q 011718 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF-KGKTIR 176 (479)
Q Consensus 98 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~-~g~~l~ 176 (479)
..++.+|.|||+.||.++.|++|.-||++.|+|-+++|+.++.+|.+||||||+|++++.|+.|++.||+..| .|+.|.
T Consensus 78 ~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 78 PPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999987 499999
Q ss_pred eeccCCCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCC
Q 011718 177 CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG 256 (479)
Q Consensus 177 v~~a~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 256 (479)
|..+..+++|||+|+|+++++++|++.|++.++.|..|.+...|....++||||||+|.++..|..|.+.|....+.+.+
T Consensus 158 vc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwg 237 (506)
T KOG0117|consen 158 VCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWG 237 (506)
T ss_pred EEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred CCceeeecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHH
Q 011718 257 NTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336 (479)
Q Consensus 257 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a 336 (479)
..+.|.|+.+....... ...+.+.|||+||+.++|++.|+.+|++||.|.+|+.++ -||||+|.+.++|.+|
T Consensus 238 n~~tVdWAep~~e~ded--~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r------DYaFVHf~eR~davkA 309 (506)
T KOG0117|consen 238 NAITVDWAEPEEEPDED--TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR------DYAFVHFAEREDAVKA 309 (506)
T ss_pred CcceeeccCcccCCChh--hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeeccc------ceeEEeecchHHHHHH
Confidence 99999999999877655 577789999999999999999999999999999999885 4899999999999999
Q ss_pred HHhcCCceecCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 011718 337 IKDTEKYEIDGQVLEVALARPQTNKRTEGVYSCAAGVHPSGLPHA--GYGSFAGTAYGSVSTGLGVAAGAGLQQPMIYGR 414 (479)
Q Consensus 337 ~~~~~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~g~~~~g~g~~~~~~~~~~~~~g~ 414 (479)
++.+|++.|+|..|.|.+|+|...++.......+++..+...+.+ ..+......++..++ ++....+..+|++|+.
T Consensus 310 m~~~ngkeldG~~iEvtLAKP~~k~k~~r~~~~~g~~~~~~~~~~~p~~~~~~~~~~g~~~~--g~~~~~y~~~P~~y~~ 387 (506)
T KOG0117|consen 310 MKETNGKELDGSPIEVTLAKPVDKKKKERKAMRQGGAYPTYYYFGPPVFYAIPPAPRGAGRG--GGSRAGYYSQPGMYGT 387 (506)
T ss_pred HHHhcCceecCceEEEEecCChhhhccchhhhhccccCCCccccCCcccCCCCCCCcCcccC--CCCccccccCCccccC
Confidence 999999999999999999999887665532222222212111100 000000111111111 1112344556777776
Q ss_pred CCCCC----CCCCCCCCCC---CCc-cccccCC
Q 011718 415 GQMPA----GMHMVPMVLP---DGR-IGYVLQQ 439 (479)
Q Consensus 415 ~~~~~----~~~~~p~~~p---~~~-~g~~~~~ 439 (479)
+.++. +|.|+|++++ .+. .+|+.++
T Consensus 388 ~~~~~~~~~~m~~~~~~l~~~~~~~~~g~~~~~ 420 (506)
T KOG0117|consen 388 GHAPGLKGYGMHMAPGGLEYIGYGRNWGYVAYQ 420 (506)
T ss_pred ccccccccCCcccccccccccccCCCcchhhhc
Confidence 66655 8889999887 444 4554444
No 2
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=6.2e-46 Score=364.61 Aligned_cols=253 Identities=35% Similarity=0.629 Sum_probs=226.5
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCC-CCeeeee
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFK-GKTIRCS 178 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~-g~~l~v~ 178 (479)
+...++|||+|||+++++++|+++|++||.|.+|+|+++ .+++++|||||+|.+.++|++||+.||+..|. ++.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 345789999999999999999999999999999999999 67999999999999999999999999998885 8999999
Q ss_pred ccCCCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCC
Q 011718 179 MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT 258 (479)
Q Consensus 179 ~a~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~ 258 (479)
++..+++|||+|||+.+++++|.+.|..++..+..+.++..+...+++++||||+|.+.++|..|++.|....+.+.++.
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 99999999999999999999999999999865666666555455678899999999999999999999887677889999
Q ss_pred ceeeecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcC--CCEEEEEccCCCCCCCceEEEEeCChHHHHHH
Q 011718 259 PTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336 (479)
Q Consensus 259 ~~v~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a 336 (479)
|.|.|+.+...... ......++|||+||++++|+++|+++|++| |.|++|.+++ +||||+|.+.++|.+|
T Consensus 214 I~VdwA~p~~~~d~--~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r------gfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 214 IAVDWAEPEEEVDE--DVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR------DYAFVHFEDREDAVKA 285 (578)
T ss_pred EEEEeecccccccc--cccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec------CeEEEEeCCHHHHHHH
Confidence 99999987654322 123345789999999999999999999999 9999998764 7999999999999999
Q ss_pred HHhcCCceecCeEEEEEecCCCCCC
Q 011718 337 IKDTEKYEIDGQVLEVALARPQTNK 361 (479)
Q Consensus 337 ~~~~~~~~~~g~~i~v~~a~~~~~~ 361 (479)
+..||+..|+|+.|+|.|+.++...
T Consensus 286 i~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 286 MDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHHhCCCEECCEEEEEEEccCCCcc
Confidence 9999999999999999999886543
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=6e-45 Score=352.42 Aligned_cols=257 Identities=24% Similarity=0.416 Sum_probs=224.0
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~ 181 (479)
+.++|||+|||.++|+++|+++|+.||+|.+|+|++++.+++++|||||+|.+.++|++||..|++..|.|+.|+|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred C------CceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccC
Q 011718 182 T------NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLD 255 (479)
Q Consensus 182 ~------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 255 (479)
+ .++|||+|||..+++++|+.+|..||. |..+.++.+. .++.+++||||+|.+.++|..|++.|++..+...
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~-i~~~~~~~~~-~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQ-IITSRILSDN-VTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCC-EEEEEEEecC-CCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 3 458999999999999999999999999 8889888873 4678999999999999999999999997654444
Q ss_pred CCCceeeecCCCCCCCch--------------------------------------------------------------
Q 011718 256 GNTPTVSWAEPKSTPDHS-------------------------------------------------------------- 273 (479)
Q Consensus 256 ~~~~~v~~~~~~~~~~~~-------------------------------------------------------------- 273 (479)
...+.+.|+.........
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQH 239 (352)
T ss_pred ceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccc
Confidence 466777776433200000
Q ss_pred -----------------------hhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeC
Q 011718 274 -----------------------AAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYA 328 (479)
Q Consensus 274 -----------------------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~ 328 (479)
......+.+|||+|||+.+++++|+++|++||.|.+|+|+++.. +. ||||||+|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~ 319 (352)
T TIGR01661 240 AAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMT 319 (352)
T ss_pred ccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEEC
Confidence 00001123699999999999999999999999999999999884 44 999999999
Q ss_pred ChHHHHHHHHhcCCceecCeEEEEEecCCCCC
Q 011718 329 ERSSALKAIKDTEKYEIDGQVLEVALARPQTN 360 (479)
Q Consensus 329 ~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~~ 360 (479)
+.++|.+||..|||..|+|+.|+|.|+..+..
T Consensus 320 ~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 320 NYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99999999999999999999999999988754
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=8.9e-44 Score=363.62 Aligned_cols=252 Identities=29% Similarity=0.508 Sum_probs=222.2
Q ss_pred eEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCC--
Q 011718 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSET-- 182 (479)
Q Consensus 105 ~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~-- 182 (479)
+|||+|||.++|+++|+++|++||.|.+|+|+++..|++++|||||+|.+.++|.+||..|++..|.|+.|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999977520
Q ss_pred --------------------------------------------------------------------------------
Q 011718 183 -------------------------------------------------------------------------------- 182 (479)
Q Consensus 183 -------------------------------------------------------------------------------- 182 (479)
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v 161 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYV 161 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEE
Confidence
Q ss_pred ----------------CceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHH
Q 011718 183 ----------------NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQK 246 (479)
Q Consensus 183 ----------------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 246 (479)
.++|||+||+..+++++|+++|..||. |..+.++.+ ..++++|||||.|.+.++|.+|+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~-i~~~~i~~~--~~g~~~G~afV~F~~~e~A~~Av~~ 238 (562)
T TIGR01628 162 GRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGE-ITSAAVMKD--GSGRSRGFAFVNFEKHEDAAKAVEE 238 (562)
T ss_pred eccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCC-EEEEEEEEC--CCCCcccEEEEEECCHHHHHHHHHH
Confidence 024889999999999999999999998 889998887 3588999999999999999999999
Q ss_pred hhcCccccC----CCCceeeecCCCCCCCch-----------hhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEE
Q 011718 247 MTSANFKLD----GNTPTVSWAEPKSTPDHS-----------AAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVV 311 (479)
Q Consensus 247 ~~~~~~~~~----~~~~~v~~~~~~~~~~~~-----------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~ 311 (479)
+++. .+. ++.+.|.++..+...... ........+|||+||++.+|+++|+++|++||.|.+|+
T Consensus 239 l~g~--~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~ 316 (562)
T TIGR01628 239 MNGK--KIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAK 316 (562)
T ss_pred hCCc--EecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEE
Confidence 9954 445 888888887665433110 01123457899999999999999999999999999999
Q ss_pred ccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCCCC
Q 011718 312 TPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNK 361 (479)
Q Consensus 312 ~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~~~ 361 (479)
|+.+..+. +|||||+|.+.++|.+|+..||+..|+|+.|.|.+|..+..+
T Consensus 317 i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 317 VMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred EEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHH
Confidence 99987666 999999999999999999999999999999999999987643
No 5
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.5e-40 Score=278.46 Aligned_cols=255 Identities=25% Similarity=0.414 Sum_probs=227.7
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~ 181 (479)
..+.|.|.-||..+|+++|+.||...|+|++|++++|+.+|.+.||+||.|.++++|++|+..|||..|..+.|+|.+++
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC------ceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccC
Q 011718 182 TN------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLD 255 (479)
Q Consensus 182 ~~------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 255 (479)
+. ..|||.+||+.++..+|.++|+.||. |..-+++.| ..++.+||.+||.|..+..|+.|++.|++..-.-.
T Consensus 120 PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGr-IItSRiL~d-qvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~ 197 (360)
T KOG0145|consen 120 PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGR-IITSRILVD-QVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGC 197 (360)
T ss_pred CChhhhcccceEEecCCccchHHHHHHHHHHhhh-hhhhhhhhh-cccceecceeEEEecchhHHHHHHHhccCCCCCCC
Confidence 64 68999999999999999999999999 777778777 57799999999999999999999999998766666
Q ss_pred CCCceeeecCCCCCCCchh--------------------------------------------------------hhhhc
Q 011718 256 GNTPTVSWAEPKSTPDHSA--------------------------------------------------------AAASQ 279 (479)
Q Consensus 256 ~~~~~v~~~~~~~~~~~~~--------------------------------------------------------~~~~~ 279 (479)
.-.|.|.++.......... .....
T Consensus 198 tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~ 277 (360)
T KOG0145|consen 198 TEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGG 277 (360)
T ss_pred CCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCC
Confidence 6778888876442111000 00011
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
.++|||.||.+++++.-|+++|.+||.|..|+++++-.+. |||+||++.+.++|..||..|||..+.+|.|.|+|...
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 4799999999999999999999999999999999999855 99999999999999999999999999999999999876
Q ss_pred C
Q 011718 358 Q 358 (479)
Q Consensus 358 ~ 358 (479)
+
T Consensus 358 k 358 (360)
T KOG0145|consen 358 K 358 (360)
T ss_pred C
Confidence 5
No 6
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-39 Score=274.18 Aligned_cols=228 Identities=20% Similarity=0.365 Sum_probs=191.4
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHH-HhcCCCCCCCeeeeecc
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID-ELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~-~l~~~~~~g~~l~v~~a 180 (479)
.-+||||+||..++|++-|..||++.|.|.+++|+.+.- + +..|.. ....+....+
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~-~---------------v~wa~~p~nQsk~t~~~------- 61 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL-K---------------VNWATAPGNQSKPTSNQ------- 61 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh-c---------------cccccCcccCCCCcccc-------
Confidence 457999999999999999999999999999999987621 0 000000 0011111111
Q ss_pred CCCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCce
Q 011718 181 ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260 (479)
Q Consensus 181 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 260 (479)
.-.+||+.|...++.+.|++.|.+||+ |.+++|++| ..+++++||+||.|.+.++|+.|+..|+ +..|..|.|+
T Consensus 62 --hfhvfvgdls~eI~~e~lr~aF~pFGe-vS~akvirD-~~T~KsKGYgFVSf~~k~dAEnAI~~Mn--GqWlG~R~IR 135 (321)
T KOG0148|consen 62 --HFHVFVGDLSPEIDNEKLREAFAPFGE-VSDAKVIRD-MNTGKSKGYGFVSFPNKEDAENAIQQMN--GQWLGRRTIR 135 (321)
T ss_pred --ceeEEehhcchhcchHHHHHHhccccc-cccceEeec-ccCCcccceeEEeccchHHHHHHHHHhC--Ceeeccceee
Confidence 345899999999999999999999999 999999999 5789999999999999999999999999 6689999999
Q ss_pred eeecCCCCCCCc---------hhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChH
Q 011718 261 VSWAEPKSTPDH---------SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERS 331 (479)
Q Consensus 261 v~~~~~~~~~~~---------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~ 331 (479)
-+|+..+..... -......+++|||+||+..+|+++|++.|+.||.|..|++.+++ ||+||.|.+.|
T Consensus 136 TNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q----GYaFVrF~tkE 211 (321)
T KOG0148|consen 136 TNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ----GYAFVRFETKE 211 (321)
T ss_pred ccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc----ceEEEEecchh
Confidence 999988753221 11234457899999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHhcCCceecCeEEEEEecCCCCCCC
Q 011718 332 SALKAIKDTEKYEIDGQVLEVALARPQTNKR 362 (479)
Q Consensus 332 ~a~~a~~~~~~~~~~g~~i~v~~a~~~~~~~ 362 (479)
+|.+||..+|+..|.|+.++|.|.+......
T Consensus 212 aAahAIv~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 212 AAAHAIVQMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred hHHHHHHHhcCceeCceEEEEeccccCCCCC
Confidence 9999999999999999999999998765543
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=3.2e-37 Score=306.93 Aligned_cols=243 Identities=22% Similarity=0.255 Sum_probs=205.2
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHh--cCCCCCCCeeeeec
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL--CSKDFKGKTIRCSM 179 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l--~~~~~~g~~l~v~~ 179 (479)
++++|||+|||+++|+++|+++|++||.|.+|+|+++ ++||||+|.+.++|++|++.+ ++..|.|+.|+|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4689999999999999999999999999999999853 579999999999999999864 67889999999998
Q ss_pred cCCC------------------ceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHH
Q 011718 180 SETN------------------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241 (479)
Q Consensus 180 a~~~------------------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~ 241 (479)
+..+ .+|+|.||++.++++.|+++|+.||. |..|.++++. .+++|||+|.+.++|.
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~-V~~v~i~~~~-----~~~~afVef~~~~~A~ 148 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGK-VLRIVTFTKN-----NVFQALVEFESVNSAQ 148 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCC-EEEEEEEecC-----CceEEEEEECCHHHHH
Confidence 7421 26899999999999999999999999 9999987752 2468999999999999
Q ss_pred HHHHHhhcCccccCCCCceeeecCCCCCC--------------------C---------chh------------------
Q 011718 242 YSRQKMTSANFKLDGNTPTVSWAEPKSTP--------------------D---------HSA------------------ 274 (479)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------~---------~~~------------------ 274 (479)
+|++.|++..+.-..+.+.|.|+.+.... . ...
T Consensus 149 ~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 228 (481)
T TIGR01649 149 HAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSH 228 (481)
T ss_pred HHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccC
Confidence 99999997665444556777666532100 0 000
Q ss_pred -----------------------------------------hhhhccceEEecCCCC-CCCHHHHHHHHhcCCCEEEEEc
Q 011718 275 -----------------------------------------AAASQVKALYVKNLPE-NTTTKQLKELFQRHGEVTKVVT 312 (479)
Q Consensus 275 -----------------------------------------~~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~v~~ 312 (479)
.....+++|||+||++ .+|+++|+++|+.||.|.+|+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki 308 (481)
T TIGR01649 229 GGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKF 308 (481)
T ss_pred CCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 0012457999999998 6999999999999999999999
Q ss_pred cCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCC
Q 011718 313 PPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQT 359 (479)
Q Consensus 313 ~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~ 359 (479)
+.++ +|||||+|.+.++|..||..||+..|.|+.|+|.+++...
T Consensus 309 ~~~~---~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 309 MKNK---KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred EeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 8864 4899999999999999999999999999999999987654
No 8
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=9.8e-37 Score=282.20 Aligned_cols=251 Identities=27% Similarity=0.475 Sum_probs=221.8
Q ss_pred CeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCC-
Q 011718 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSET- 182 (479)
Q Consensus 104 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~- 182 (479)
.||||++||+.++.++|.++|+.+|+|..|.++.+..++.++||+||+|.-.+++++|++.+++..|.|+.|+|.++..
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999988752
Q ss_pred -------------------------------CceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEE
Q 011718 183 -------------------------------NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAF 231 (479)
Q Consensus 183 -------------------------------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~af 231 (479)
+-+|+|+|||+.+...+|..+|+.||. |..|.|++. ..++-.||||
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~-V~Ei~IP~k--~dgklcGFaF 162 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGK-VVEIVIPRK--KDGKLCGFAF 162 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcce-EEEEEcccC--CCCCccceEE
Confidence 347999999999999999999999999 999999864 3455559999
Q ss_pred EEeCChhHHHHHHHHhhcCccccCCCCceeeecCCCCCCCchhh------------------------------------
Q 011718 232 VLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAA------------------------------------ 275 (479)
Q Consensus 232 v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------------------------------------ 275 (479)
|+|....+|..|++.++ ...+.||+|.|.||.++........
T Consensus 163 V~fk~~~dA~~Al~~~N--~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~e 240 (678)
T KOG0127|consen 163 VQFKEKKDAEKALEFFN--GNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSE 240 (678)
T ss_pred EEEeeHHHHHHHHHhcc--CceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccccc
Confidence 99999999999999999 6789999999999987632221000
Q ss_pred -----------------------------------------------hhhccceEEecCCCCCCCHHHHHHHHhcCCCEE
Q 011718 276 -----------------------------------------------AASQVKALYVKNLPENTTTKQLKELFQRHGEVT 308 (479)
Q Consensus 276 -----------------------------------------------~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~ 308 (479)
......+|||+|||+++|+++|.++|++||.|.
T Consensus 241 deEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ 320 (678)
T KOG0127|consen 241 DEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVK 320 (678)
T ss_pred ccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccce
Confidence 000026899999999999999999999999999
Q ss_pred EEEccCCCCCC--CceEEEEeCChHHHHHHHHhcC-----C-ceecCeEEEEEecCCCC
Q 011718 309 KVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTE-----K-YEIDGQVLEVALARPQT 359 (479)
Q Consensus 309 ~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~-----~-~~~~g~~i~v~~a~~~~ 359 (479)
.+.|+.++.+. +|.|||.|.+..+|..||.+.. + ..|+||.|.|.+|-.+.
T Consensus 321 ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 321 YAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred eEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchH
Confidence 99999888755 8999999999999999999872 3 68999999999997654
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=1e-35 Score=297.73 Aligned_cols=252 Identities=24% Similarity=0.399 Sum_probs=215.0
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||. |++..|.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3457899999999999999999999999999999999999999999999999999999999995 899999999999987
Q ss_pred cCC------------------CceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHH
Q 011718 180 SET------------------NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241 (479)
Q Consensus 180 a~~------------------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~ 241 (479)
+.. ..+|||+|||..+++++|+++|..||. |..|.++.++ .+++++|||||+|.+.++|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~-i~~v~~~~d~-~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGD-IEDVQLHRDP-ETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC-eEEEEEEEcC-CCCccceEEEEEECCHHHHH
Confidence 531 368999999999999999999999999 9999999884 45789999999999999999
Q ss_pred HHHHHhhcCccccCCCCceeeecCCCCCCC--------------------------------------------c-----
Q 011718 242 YSRQKMTSANFKLDGNTPTVSWAEPKSTPD--------------------------------------------H----- 272 (479)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------------------------------~----- 272 (479)
.|+..|++ ..+.++.|.|.|+....... .
T Consensus 243 ~A~~~l~g--~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T TIGR01622 243 EALEVMNG--FELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIA 320 (457)
T ss_pred HHHHhcCC--cEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhh
Confidence 99999994 77889999999953210000 0
Q ss_pred -----------h-----------------------hhhhhccceEEecCCCCCCC----------HHHHHHHHhcCCCEE
Q 011718 273 -----------S-----------------------AAAASQVKALYVKNLPENTT----------TKQLKELFQRHGEVT 308 (479)
Q Consensus 273 -----------~-----------------------~~~~~~~~~l~v~nl~~~~~----------~~~l~~~f~~~G~v~ 308 (479)
. ......+++|+|.||....+ .++|++.|++||.|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~ 400 (457)
T TIGR01622 321 LMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVV 400 (457)
T ss_pred hhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCee
Confidence 0 00112356889999954443 368999999999999
Q ss_pred EEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 309 KVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 309 ~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
.|.|..... .|++||+|.++++|.+|+..|||..|+|+.|.|.+....
T Consensus 401 ~v~v~~~~~--~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 401 HIYVDTKNS--AGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred EEEEeCCCC--ceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 999874332 489999999999999999999999999999999997643
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=4.9e-35 Score=291.30 Aligned_cols=243 Identities=17% Similarity=0.252 Sum_probs=204.9
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCC--Ceeeeecc
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKG--KTIRCSMS 180 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g--~~l~v~~a 180 (479)
-.+|||.||++.+|+++|+++|+.||.|.+|.|+++.. +++|||+|.+.++|.+|++.|||..|.+ ..|+|.++
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 34799999999999999999999999999999987542 4789999999999999999999999865 35555443
Q ss_pred C-------------------------------------------------------------------------------
Q 011718 181 E------------------------------------------------------------------------------- 181 (479)
Q Consensus 181 ~------------------------------------------------------------------------------- 181 (479)
+
T Consensus 172 k~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR01649 172 KPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRY 251 (481)
T ss_pred cCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCC
Confidence 2
Q ss_pred ----------------------CCceeeccCCCC-CcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChh
Q 011718 182 ----------------------TNNRLFIGNVPK-SWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNA 238 (479)
Q Consensus 182 ----------------------~~~~l~v~nl~~-~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~ 238 (479)
+.++|||+||++ .+++++|+++|+.||. |..|.++++ .++||||+|.+.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~-V~~vki~~~------~~g~afV~f~~~~ 324 (481)
T TIGR01649 252 RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGN-VERVKFMKN------KKETALIEMADPY 324 (481)
T ss_pred cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCC-eEEEEEEeC------CCCEEEEEECCHH
Confidence 124799999998 6999999999999999 999999886 2699999999999
Q ss_pred HHHHHHHHhhcCccccCCCCceeeecCCCCCCCch------------------------h------hhhhccceEEecCC
Q 011718 239 CADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHS------------------------A------AAASQVKALYVKNL 288 (479)
Q Consensus 239 ~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------------------------~------~~~~~~~~l~v~nl 288 (479)
+|..|+..|+ +..+.++.|.|.++......... . ....++.+|||+||
T Consensus 325 ~A~~Ai~~ln--g~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NL 402 (481)
T TIGR01649 325 QAQLALTHLN--GVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNI 402 (481)
T ss_pred HHHHHHHHhC--CCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecC
Confidence 9999999999 56778999999987543211000 0 00124578999999
Q ss_pred CCCCCHHHHHHHHhcCCC--EEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeE------EEEEecCCC
Q 011718 289 PENTTTKQLKELFQRHGE--VTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQV------LEVALARPQ 358 (479)
Q Consensus 289 ~~~~~~~~l~~~f~~~G~--v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~------i~v~~a~~~ 358 (479)
|+.+|+++|+++|+.||. |+.|++.....+++++|||+|.+.++|.+||..||++.|.++. |+|+|++++
T Consensus 403 p~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 403 PLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 999999999999999997 8889887666555789999999999999999999999999985 999999865
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=7.3e-35 Score=273.42 Aligned_cols=173 Identities=28% Similarity=0.466 Sum_probs=152.9
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.....++|||+|||+++|+++|+++|+.||+|++|+|+++..+++++|||||+|.+.++|++||+.|++..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccCCCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCC
Q 011718 179 MSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNT 258 (479)
Q Consensus 179 ~a~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~ 258 (479)
++.+...
T Consensus 183 ~a~p~~~------------------------------------------------------------------------- 189 (346)
T TIGR01659 183 YARPGGE------------------------------------------------------------------------- 189 (346)
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 7642100
Q ss_pred ceeeecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHH
Q 011718 259 PTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKA 336 (479)
Q Consensus 259 ~~v~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a 336 (479)
....++|||+|||+.+|+++|+++|++||.|+.|.|++++. ++ |+||||+|.+.++|++|
T Consensus 190 ------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~A 251 (346)
T TIGR01659 190 ------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEA 251 (346)
T ss_pred ------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHH
Confidence 00025799999999999999999999999999999998875 34 89999999999999999
Q ss_pred HHhcCCceecC--eEEEEEecCCCCCCC
Q 011718 337 IKDTEKYEIDG--QVLEVALARPQTNKR 362 (479)
Q Consensus 337 ~~~~~~~~~~g--~~i~v~~a~~~~~~~ 362 (479)
|+.||+..|.+ ++|+|.++.......
T Consensus 252 i~~lng~~~~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 252 ISALNNVIPEGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred HHHhCCCccCCCceeEEEEECCcccccc
Confidence 99999998876 789999998765443
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=9.2e-35 Score=295.03 Aligned_cols=245 Identities=23% Similarity=0.385 Sum_probs=202.0
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhccc------------CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPI------------GEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKD 169 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~------------G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~ 169 (479)
..++|||+|||+.+|+++|+++|..| +.|..|.+ .+.+|||||+|.+.++|..|| .|++..
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l~g~~ 246 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-ALDSII 246 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cCCCeE
Confidence 57899999999999999999999875 24444444 456899999999999999999 599999
Q ss_pred CCCCeeeeeccC-----------------------------------CCceeeccCCCCCcCHHHHHHHHHhhCCceeEE
Q 011718 170 FKGKTIRCSMSE-----------------------------------TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTI 214 (479)
Q Consensus 170 ~~g~~l~v~~a~-----------------------------------~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~ 214 (479)
|.|+.|+|.... ..++|||+|||..+++++|+++|..||. |..+
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~~ 325 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD-LKAF 325 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eeEE
Confidence 999999986421 1358999999999999999999999999 9999
Q ss_pred EeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCceeeecCCCCCCCch----------------h----
Q 011718 215 ELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHS----------------A---- 274 (479)
Q Consensus 215 ~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------------~---- 274 (479)
.++.++ .++.++|||||+|.+.+.|..|+..|+ +..+.++.|.|.++......... .
T Consensus 326 ~~~~~~-~~g~~~g~afv~f~~~~~a~~A~~~l~--g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (509)
T TIGR01642 326 NLIKDI-ATGLSKGYAFCEYKDPSVTDVAIAALN--GKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSIL 402 (509)
T ss_pred EEEecC-CCCCcCeEEEEEECCHHHHHHHHHHcC--CCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhc
Confidence 999884 578999999999999999999999998 56788999999887543211100 0
Q ss_pred -hhhhccceEEecCCCCCC----------CHHHHHHHHhcCCCEEEEEccCCCC----CC-CceEEEEeCChHHHHHHHH
Q 011718 275 -AAASQVKALYVKNLPENT----------TTKQLKELFQRHGEVTKVVTPPGKS----GK-RDFGFIHYAERSSALKAIK 338 (479)
Q Consensus 275 -~~~~~~~~l~v~nl~~~~----------~~~~l~~~f~~~G~v~~v~~~~~~~----~~-~g~~fV~f~~~~~a~~a~~ 338 (479)
.....+.+|+|.||...- ..++|+++|++||.|+.|.|++... +. +|+|||+|.+.++|.+||.
T Consensus 403 ~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~ 482 (509)
T TIGR01642 403 QIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAME 482 (509)
T ss_pred cccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHH
Confidence 001245789999996421 2367999999999999999987532 22 6899999999999999999
Q ss_pred hcCCceecCeEEEEEecCC
Q 011718 339 DTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 339 ~~~~~~~~g~~i~v~~a~~ 357 (479)
.|||..|+|+.|.|.|...
T Consensus 483 ~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 483 GMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HcCCCEECCeEEEEEEeCH
Confidence 9999999999999999754
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=6.6e-34 Score=280.00 Aligned_cols=163 Identities=23% Similarity=0.451 Sum_probs=149.6
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
....++|||+|||+++|+++|+++|++||.|.+|+|+.++.|++++|||||+|.+.++|++|++.||+..|.|+.|+|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cC-----------------CCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHH
Q 011718 180 SE-----------------TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADY 242 (479)
Q Consensus 180 a~-----------------~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ 242 (479)
.. ..++|||+||++.+++++|+++|+.||. |..+++.+++ .+++++|||||.|.+.++|..
T Consensus 184 p~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~-I~svrl~~D~-~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 184 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARAP-TGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred cccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCC-eeEEEEEecC-CCCCcCCeEEEEECCHHHHHH
Confidence 43 1268999999999999999999999999 9999999985 568899999999999999999
Q ss_pred HHHHhhcCccccCCCCceeeecCC
Q 011718 243 SRQKMTSANFKLDGNTPTVSWAEP 266 (479)
Q Consensus 243 a~~~~~~~~~~~~~~~~~v~~~~~ 266 (479)
|+..|+ .+.++|+.|+|.++..
T Consensus 262 AI~amN--g~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 262 AIASMN--LFDLGGQYLRVGKCVT 283 (612)
T ss_pred HHHHhC--CCeeCCeEEEEEecCC
Confidence 999999 5677888888877653
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.8e-34 Score=260.15 Aligned_cols=256 Identities=28% Similarity=0.502 Sum_probs=221.0
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCC-CCC--Ceeeee
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKD-FKG--KTIRCS 178 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~-~~g--~~l~v~ 178 (479)
..-+|||+-||..++|.+|+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+.+||+.. |-| ..|.|+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 34469999999999999999999999999999999999999999999999999999999999998765 555 577888
Q ss_pred ccCC-------CceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCc
Q 011718 179 MSET-------NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN 251 (479)
Q Consensus 179 ~a~~-------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 251 (479)
++.. .++|||+-|++.+++.+++.+|.+||. |++|.|++++ .+.+||++||.|.+.+.|..|++.|++..
T Consensus 113 ~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~-Ied~~ilrd~--~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 113 YADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGH-IEDCYILRDP--DGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred ccchhhhccccchhhhhhhccccccHHHHHHHHHhhCc-cchhhheecc--cccccceeEEEEehHHHHHHHHHhhccce
Confidence 8753 568999999999999999999999999 9999999984 58999999999999999999999999754
Q ss_pred cc-cCCCCceeeecCCCCCCCchhhh------------------------------------------------------
Q 011718 252 FK-LDGNTPTVSWAEPKSTPDHSAAA------------------------------------------------------ 276 (479)
Q Consensus 252 ~~-~~~~~~~v~~~~~~~~~~~~~~~------------------------------------------------------ 276 (479)
.. -....+.|+|+.++.........
T Consensus 190 tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l 269 (510)
T KOG0144|consen 190 TMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPL 269 (510)
T ss_pred eeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCc
Confidence 32 23457888999876111000000
Q ss_pred -----------------------------------------------------------h--------------------
Q 011718 277 -----------------------------------------------------------A-------------------- 277 (479)
Q Consensus 277 -----------------------------------------------------------~-------------------- 277 (479)
.
T Consensus 270 ~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~ 349 (510)
T KOG0144|consen 270 NATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAG 349 (510)
T ss_pred chhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccccc
Confidence 0
Q ss_pred ------------------------------------------------------------------------hccceEEe
Q 011718 278 ------------------------------------------------------------------------SQVKALYV 285 (479)
Q Consensus 278 ------------------------------------------------------------------------~~~~~l~v 285 (479)
.....|||
T Consensus 350 ~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfi 429 (510)
T KOG0144|consen 350 GMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFI 429 (510)
T ss_pred ccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceee
Confidence 00367999
Q ss_pred cCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCCC
Q 011718 286 KNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTN 360 (479)
Q Consensus 286 ~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~~ 360 (479)
.+||.+.-+.+|-..|..||.|.+..+..++.+. ++|+||.|++..+|..||..||+..|+.++++|.+.+.+..
T Consensus 430 yhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 430 YHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred eeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 9999999999999999999999998888888766 89999999999999999999999999999999999887654
No 15
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.8e-30 Score=243.54 Aligned_cols=243 Identities=27% Similarity=0.467 Sum_probs=218.9
Q ss_pred CeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCCC
Q 011718 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN 183 (479)
Q Consensus 104 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~~ 183 (479)
..|||+ +++|+..|.++|+++|+|++|+++++. | +.|||||.|.++++|.+||..+|...++|+.|+|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 899999999999999999999999998 6 9999999999999999999999999999999999998754
Q ss_pred -ceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCceee
Q 011718 184 -NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVS 262 (479)
Q Consensus 184 -~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 262 (479)
..|||.||++.++...|..+|+.||. |.+|.+..+.. + ++|| ||+|.+.+.|.+|+..++ +..+.++.+.|.
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~-ilS~kv~~~~~--g-~kg~-FV~f~~e~~a~~ai~~~n--g~ll~~kki~vg 148 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGN-ILSCKVATDEN--G-SKGY-FVQFESEESAKKAIEKLN--GMLLNGKKIYVG 148 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcC-eeEEEEEEcCC--C-ceee-EEEeCCHHHHHHHHHHhc--CcccCCCeeEEe
Confidence 45999999999999999999999999 99999999853 3 9999 999999999999999999 567788888888
Q ss_pred ecCCCCCCCch-hhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhc
Q 011718 263 WAEPKSTPDHS-AAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDT 340 (479)
Q Consensus 263 ~~~~~~~~~~~-~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~ 340 (479)
....+...... ......-+.++|.|++..+++..|..+|..+|.|..+.++.+..+. ++|+||.|.++++|..|+..|
T Consensus 149 ~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l 228 (369)
T KOG0123|consen 149 LFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETL 228 (369)
T ss_pred eccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhc
Confidence 77665443321 1134445789999999999999999999999999999999999887 999999999999999999999
Q ss_pred CCceecCeEEEEEecCCCC
Q 011718 341 EKYEIDGQVLEVALARPQT 359 (479)
Q Consensus 341 ~~~~~~g~~i~v~~a~~~~ 359 (479)
++..+.+..+.|..+..+.
T Consensus 229 ~~~~~~~~~~~V~~aqkk~ 247 (369)
T KOG0123|consen 229 NGKIFGDKELYVGRAQKKS 247 (369)
T ss_pred cCCcCCccceeecccccch
Confidence 9999999999999988743
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.7e-30 Score=243.66 Aligned_cols=253 Identities=28% Similarity=0.483 Sum_probs=220.0
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~ 181 (479)
..+.|||.||+.+++..+|.++|+.||.|++|++..+.. | ++|| ||+|.++++|++|++.+||..+.+++|.|....
T Consensus 75 d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 75 DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 334499999999999999999999999999999999976 5 9999 999999999999999999999999999997654
Q ss_pred C--------------CceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHh
Q 011718 182 T--------------NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKM 247 (479)
Q Consensus 182 ~--------------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~ 247 (479)
. -..+++.+++..++...|..+|..+|. |..+.++.+ ..+++++|+||.|.+.+.|..|+..|
T Consensus 152 ~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~-i~s~~v~~~--~~g~~~~~gfv~f~~~e~a~~av~~l 228 (369)
T KOG0123|consen 152 RKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGS-ITSVAVMRD--SIGKSKGFGFVNFENPEDAKKAVETL 228 (369)
T ss_pred chhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCc-ceEEEEeec--CCCCCCCccceeecChhHHHHHHHhc
Confidence 3 356899999999999999999999999 999999986 45779999999999999999999999
Q ss_pred hcCccccCCCCceeeecCCCCCCCc-----------hhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCC
Q 011718 248 TSANFKLDGNTPTVSWAEPKSTPDH-----------SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGK 316 (479)
Q Consensus 248 ~~~~~~~~~~~~~v~~~~~~~~~~~-----------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~ 316 (479)
++.. ..+..+.|..+..+..... ..........|||.||+..++.+.|+.+|+.||.|..++|+.+.
T Consensus 229 ~~~~--~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~ 306 (369)
T KOG0123|consen 229 NGKI--FGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE 306 (369)
T ss_pred cCCc--CCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc
Confidence 9543 4466666666655322111 11113346789999999999999999999999999999999998
Q ss_pred CCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCCCCC
Q 011718 317 SGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR 362 (479)
Q Consensus 317 ~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~~~~ 362 (479)
.++ +||+||.|.+.++|.+|+..+|+..+.++.|.|.++.....+.
T Consensus 307 ~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~ 353 (369)
T KOG0123|consen 307 NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRR 353 (369)
T ss_pred CCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccch
Confidence 888 9999999999999999999999999999999999999655543
No 17
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=3.7e-28 Score=214.63 Aligned_cols=250 Identities=20% Similarity=0.372 Sum_probs=208.5
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~ 181 (479)
--|+|||+.|.+.+.++.|+..|..||+|.+|.+..|..|++.+|||||+|.-++.|+.|++.||+..+.||.|+|....
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred -----------------CCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHH
Q 011718 182 -----------------TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSR 244 (479)
Q Consensus 182 -----------------~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 244 (479)
.-++|||..+.++.++++|+.+|+.||+ |..|.+.+.| ..+.++||+|++|.+..+...|+
T Consensus 192 NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~-I~~C~LAr~p-t~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARAP-TGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcc-eeeEEeeccC-CCCCccceeeEEeccccchHHHh
Confidence 3478999999999999999999999999 9999999985 56889999999999999999999
Q ss_pred HHhhcCccccCCCCceeeecCCCCCCCchh--------------------------------------------------
Q 011718 245 QKMTSANFKLDGNTPTVSWAEPKSTPDHSA-------------------------------------------------- 274 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------------------------------------------------- 274 (479)
..|+ -+.++|..++|..+......-..+
T Consensus 270 asMN--lFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~ 347 (544)
T KOG0124|consen 270 ASMN--LFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQ 347 (544)
T ss_pred hhcc--hhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccC
Confidence 9988 566677766665543220000000
Q ss_pred ---------------------------------------------------------------------h----------
Q 011718 275 ---------------------------------------------------------------------A---------- 275 (479)
Q Consensus 275 ---------------------------------------------------------------------~---------- 275 (479)
.
T Consensus 348 p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI 427 (544)
T KOG0124|consen 348 PLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSI 427 (544)
T ss_pred CCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccc
Confidence 0
Q ss_pred --------------hhhccceEEecCC--CCCCC---HHHHHHHHhcCCCEEEEEccCCCCCC------CceEEEEeCCh
Q 011718 276 --------------AASQVKALYVKNL--PENTT---TKQLKELFQRHGEVTKVVTPPGKSGK------RDFGFIHYAER 330 (479)
Q Consensus 276 --------------~~~~~~~l~v~nl--~~~~~---~~~l~~~f~~~G~v~~v~~~~~~~~~------~g~~fV~f~~~ 330 (479)
....++.|.++|+ |.+++ +.+|++-|.+||.|.+|.|...+.+. ----||+|...
T Consensus 428 ~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~ 507 (544)
T KOG0124|consen 428 SGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIA 507 (544)
T ss_pred cCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechh
Confidence 0000356778887 44554 36789999999999999998877643 12469999999
Q ss_pred HHHHHHHHhcCCceecCeEEEEEec
Q 011718 331 SSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 331 ~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
.++.+|+.+|+|++|.|+++....-
T Consensus 508 ~e~~rak~ALdGRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 508 SETHRAKQALDGRFFGGRKVVAEVY 532 (544)
T ss_pred hHHHHHHHhhccceecCceeehhhh
Confidence 9999999999999999999876543
No 18
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.8e-27 Score=220.94 Aligned_cols=235 Identities=24% Similarity=0.396 Sum_probs=192.9
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCC
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSET 182 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~ 182 (479)
..+|+|+||||.|...+|+.+|+.||.|..|.|.+... ++..|||||+|....+|..||+.+|+..|.||+|-|.||.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 66899999999999999999999999999999998777 55569999999999999999999999999999999999640
Q ss_pred --------------------------------------------------------------------------------
Q 011718 183 -------------------------------------------------------------------------------- 182 (479)
Q Consensus 183 -------------------------------------------------------------------------------- 182 (479)
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence
Q ss_pred ----------------CceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHH
Q 011718 183 ----------------NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQK 246 (479)
Q Consensus 183 ----------------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 246 (479)
..+|||+|||++++++.|...|++||+ |..+.++.++ .+++++|.|||.|.+..++..|+.+
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~-v~ya~iV~~k-~T~~skGtAFv~Fkt~~~~~~ci~~ 353 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGE-VKYAIIVKDK-DTGHSKGTAFVKFKTQIAAQNCIEA 353 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhcc-ceeEEEEecc-CCCCcccceEEEeccHHHHHHHHHh
Confidence 157999999999999999999999999 9999999984 7899999999999999999999988
Q ss_pred hh----cCccccCCCCceeeecCCCCCCCchh------------------------------------------------
Q 011718 247 MT----SANFKLDGNTPTVSWAEPKSTPDHSA------------------------------------------------ 274 (479)
Q Consensus 247 ~~----~~~~~~~~~~~~v~~~~~~~~~~~~~------------------------------------------------ 274 (479)
.. ...+.+.||.+.|..+..+.......
T Consensus 354 Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~ 433 (678)
T KOG0127|consen 354 ASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKR 433 (678)
T ss_pred cCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHH
Confidence 72 22377899999999887652211100
Q ss_pred ------hhhhccceEEecCCCCCCCHHHHHHHHhc----C-CCEE-EEEccCCC-----CCCCceEEEEeCChHHHHHHH
Q 011718 275 ------AAASQVKALYVKNLPENTTTKQLKELFQR----H-GEVT-KVVTPPGK-----SGKRDFGFIHYAERSSALKAI 337 (479)
Q Consensus 275 ------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~----~-G~v~-~v~~~~~~-----~~~~g~~fV~f~~~~~a~~a~ 337 (479)
......++|.|.|||..++...|..++.+ | +.|. .|+.+... +.+.||+||.|..++.|.+|+
T Consensus 434 k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkal 513 (678)
T KOG0127|consen 434 KKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKAL 513 (678)
T ss_pred HhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhh
Confidence 00011367899999999999999888754 2 2232 23333222 223799999999999999999
Q ss_pred Hhc
Q 011718 338 KDT 340 (479)
Q Consensus 338 ~~~ 340 (479)
..+
T Consensus 514 k~~ 516 (678)
T KOG0127|consen 514 KVL 516 (678)
T ss_pred hcc
Confidence 865
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=6.2e-26 Score=223.85 Aligned_cols=174 Identities=24% Similarity=0.469 Sum_probs=150.8
Q ss_pred CceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCceee
Q 011718 183 NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVS 262 (479)
Q Consensus 183 ~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 262 (479)
.++|||+||++.+++++|+++|..||. |..|.++.++ .+++++|||||+|.+.++|..|+..|+ +..+.++.|.|.
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~-I~sV~I~~D~-~TgkskGfAFVeF~s~e~A~~Ai~~ln--G~~i~GR~IkV~ 182 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWDP-ATGKHKGFAFVEYEVPEAAQLALEQMN--GQMLGGRNIKVG 182 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCC-EEEEEEeecC-CCCCcCCeEEEEeCcHHHHHHHHHhcC--CeEEecceeeec
Confidence 478999999999999999999999999 9999999984 568999999999999999999999998 567889999998
Q ss_pred ecCCCCCCCc----hhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHH
Q 011718 263 WAEPKSTPDH----SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKA 336 (479)
Q Consensus 263 ~~~~~~~~~~----~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a 336 (479)
+......... ........++|||+||+..+++++|+++|+.||.|.+|+|.++..+. ||||||+|.+.++|.+|
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHH
Confidence 6543321110 00112234789999999999999999999999999999999987643 89999999999999999
Q ss_pred HHhcCCceecCeEEEEEecCCCCC
Q 011718 337 IKDTEKYEIDGQVLEVALARPQTN 360 (479)
Q Consensus 337 ~~~~~~~~~~g~~i~v~~a~~~~~ 360 (479)
|..||+..|+|+.|+|.++.++..
T Consensus 263 I~amNg~elgGr~LrV~kAi~pP~ 286 (612)
T TIGR01645 263 IASMNLFDLGGQYLRVGKCVTPPD 286 (612)
T ss_pred HHHhCCCeeCCeEEEEEecCCCcc
Confidence 999999999999999999986543
No 20
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.95 E-value=4.9e-27 Score=225.43 Aligned_cols=250 Identities=22% Similarity=0.347 Sum_probs=207.9
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
...+.|+|+|||..+..++|..+|..||.|..|.+.+. |. .|+|.|.+..+|.+|+..|....+....+.+.|+
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~a 456 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWA 456 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cc---eeeeeecCccchHHHHHHhchhhhccCccccccC
Confidence 35578999999999999999999999999999955321 22 4999999999999999999988777777766664
Q ss_pred C--------------------------------------------------------CCceeeccCCCCCcCHHHHHHHH
Q 011718 181 E--------------------------------------------------------TNNRLFIGNVPKSWTEKEFRKVI 204 (479)
Q Consensus 181 ~--------------------------------------------------------~~~~l~v~nl~~~~~~~~l~~~f 204 (479)
. ..++|||.||++.++.+.|..+|
T Consensus 457 P~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F 536 (725)
T KOG0110|consen 457 PEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLF 536 (725)
T ss_pred hhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHH
Confidence 3 01349999999999999999999
Q ss_pred HhhCCceeEEEeeeCCC--CCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCceeeecCCCCCC--Cchhhhhhcc
Q 011718 205 EDVGPGVDTIELIKDPQ--APSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTP--DHSAAAASQV 280 (479)
Q Consensus 205 ~~~g~~i~~~~~~~~~~--~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~ 280 (479)
...|. |..+.|..-+. ..-.+.||+||+|.+.++|..|++.|+ +..++|+.|.+.++..+... ..........
T Consensus 537 ~k~G~-VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lq--gtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~ 613 (725)
T KOG0110|consen 537 SKQGT-VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQ--GTVLDGHKLELKISENKPASTVGKKKSKKKKG 613 (725)
T ss_pred HhcCe-EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhc--CceecCceEEEEeccCcccccccccccccccc
Confidence 99988 88887765432 234577999999999999999999998 67899999999998822211 1111122235
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCC-C-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~-~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
+.|+|+|||+..+..+|+.+|..||.|.+|+|+..... . +|||||+|-++.+|.+|+.+|....|.||+|.+.||...
T Consensus 614 tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 614 TKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred ceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccc
Confidence 79999999999999999999999999999999988332 2 899999999999999999999999999999999999875
Q ss_pred C
Q 011718 359 T 359 (479)
Q Consensus 359 ~ 359 (479)
.
T Consensus 694 ~ 694 (725)
T KOG0110|consen 694 N 694 (725)
T ss_pred h
Confidence 4
No 21
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.95 E-value=2e-27 Score=222.13 Aligned_cols=250 Identities=23% Similarity=0.403 Sum_probs=209.6
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
....++||+--|+..++.-+|.+||+.+|+|..|+|+.++.+++++|.|||+|.+.+++..|| .|.|+.+.|.+|.|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecc
Confidence 346789999999999999999999999999999999999999999999999999999999999 6899999999999987
Q ss_pred cCC--------------------CceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhH
Q 011718 180 SET--------------------NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239 (479)
Q Consensus 180 a~~--------------------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~ 239 (479)
... -..|||+||.+++++..|+.+|+.||. |+.|.+..| ..+|+++||+||+|.+.++
T Consensus 255 sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~-Ie~v~l~~d-~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGK-IENVQLTKD-SETGRSKGFGFITFVNKED 332 (549)
T ss_pred cHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCccc-ceeeeeccc-cccccccCcceEEEecHHH
Confidence 531 234899999999999999999999999 999999998 4579999999999999999
Q ss_pred HHHHHHHhhcCccccCCCCceeeecCCCCCCCch----------------------------------------------
Q 011718 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHS---------------------------------------------- 273 (479)
Q Consensus 240 a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------------------------------- 273 (479)
|.+|+..|++ +.+.|+.|.|.....+......
T Consensus 333 ar~a~e~lng--felAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~ 410 (549)
T KOG0147|consen 333 ARKALEQLNG--FELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALL 410 (549)
T ss_pred HHHHHHHhcc--ceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHH
Confidence 9999999995 8899999888755432111000
Q ss_pred -------------------hhhh-------hccceEEecCC--CCCCC--------HHHHHHHHhcCCCEEEEEccCCCC
Q 011718 274 -------------------AAAA-------SQVKALYVKNL--PENTT--------TKQLKELFQRHGEVTKVVTPPGKS 317 (479)
Q Consensus 274 -------------------~~~~-------~~~~~l~v~nl--~~~~~--------~~~l~~~f~~~G~v~~v~~~~~~~ 317 (479)
.... ..+.++.+.|+ |...| .++|.+-+.+||.|..|.+.+...
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~ 490 (549)
T KOG0147|consen 411 LLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA 490 (549)
T ss_pred hccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC
Confidence 0000 11335555665 21112 267888899999999999977664
Q ss_pred CCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 318 GKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 318 ~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
|+.||.|.+.+.|..|+.+|||.+|.|+.|++.|-.-
T Consensus 491 ---g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 491 ---GCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred ---ceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeeh
Confidence 7999999999999999999999999999999988653
No 22
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.95 E-value=9e-26 Score=204.11 Aligned_cols=144 Identities=27% Similarity=0.464 Sum_probs=129.5
Q ss_pred CCCeEEECCCCCCCCHHHHHHhh-cccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLC-EPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f-~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
..+.+||.|||+++.+++|++|| .+.|+|+.|.++.|.. |+++|||.|+|+++|.+++|++.||...|.||.|.|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 45569999999999999999999 5788999999999976 999999999999999999999999999999999999763
Q ss_pred C-------------------------------------------------------------------------------
Q 011718 181 E------------------------------------------------------------------------------- 181 (479)
Q Consensus 181 ~------------------------------------------------------------------------------- 181 (479)
.
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 2
Q ss_pred ------------CCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhc
Q 011718 182 ------------TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTS 249 (479)
Q Consensus 182 ------------~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 249 (479)
-..++||.||.+.+..+.|.+.|.-.|. ++.+.+..+. .+.+++|+.++|.++-.|-.|+..+..
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGk-v~~vdf~idK--eG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGK-VQSVDFSIDK--EGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhcccee-eeeeceeecc--ccccCCeeEEEecchHHHHHHHHhhcc
Confidence 0247899999999999999999999998 9999887763 468899999999999999999998885
No 23
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.4e-26 Score=196.93 Aligned_cols=157 Identities=30% Similarity=0.585 Sum_probs=147.7
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCC
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSET 182 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~ 182 (479)
...|||+.|...++-++|++.|.+||+|.+++|++|..|+++|||+||.|.++++|+.||..|||+.|.+|.|+..||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999853
Q ss_pred ----------------------CceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHH
Q 011718 183 ----------------------NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACA 240 (479)
Q Consensus 183 ----------------------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a 240 (479)
+++||++|++.-++++.|++.|..||+ |.+|+++++ +||+||.|.+.++|
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~-I~EVRvFk~-------qGYaFVrF~tkEaA 213 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP-IQEVRVFKD-------QGYAFVRFETKEAA 213 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc-ceEEEEecc-------cceEEEEecchhhH
Confidence 578999999999999999999999999 999999987 59999999999999
Q ss_pred HHHHHHhhcCccccCCCCceeeecCCCCC
Q 011718 241 DYSRQKMTSANFKLDGNTPTVSWAEPKST 269 (479)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~v~~~~~~~~ 269 (479)
..|+-.++ +..+.+..+++.|-+....
T Consensus 214 ahAIv~mN--ntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 214 AHAIVQMN--NTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred HHHHHHhc--CceeCceEEEEeccccCCC
Confidence 99999999 6788999999999776543
No 24
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=2e-24 Score=209.12 Aligned_cols=168 Identities=24% Similarity=0.486 Sum_probs=149.8
Q ss_pred CCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCcee
Q 011718 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTV 261 (479)
Q Consensus 182 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 261 (479)
++.+|||+|||..+++++|+++|+.||+ |..|.|+++ ..+++++|||||+|.+.++|..|+..|+ +..+.++.|.|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~-i~~v~i~~d-~~~g~s~g~afV~f~~~~~A~~Ai~~l~--g~~l~g~~i~v 77 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGE-IESCKLVRD-KVTGQSLGYGFVNYVRPEDAEKAVNSLN--GLRLQNKTIKV 77 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCC-EEEEEEEEc-CCCCccceEEEEEECcHHHHHHHHhhcc--cEEECCeeEEE
Confidence 4679999999999999999999999999 999999998 4568999999999999999999999998 57789999999
Q ss_pred eecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHh
Q 011718 262 SWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKD 339 (479)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~ 339 (479)
.|+.+.... ....+|||+|||..+++++|+.+|++||.|..+.++.+.. +. +|||||+|.+.++|..|+..
T Consensus 78 ~~a~~~~~~-------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~ 150 (352)
T TIGR01661 78 SYARPSSDS-------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKT 150 (352)
T ss_pred Eeecccccc-------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 998765432 2246899999999999999999999999999999988764 33 89999999999999999999
Q ss_pred cCCceecC--eEEEEEecCCCCC
Q 011718 340 TEKYEIDG--QVLEVALARPQTN 360 (479)
Q Consensus 340 ~~~~~~~g--~~i~v~~a~~~~~ 360 (479)
||+..+.| .+|.|.++..+..
T Consensus 151 l~g~~~~g~~~~i~v~~a~~~~~ 173 (352)
T TIGR01661 151 LNGTTPSGCTEPITVKFANNPSS 173 (352)
T ss_pred hCCCccCCCceeEEEEECCCCCc
Confidence 99998877 6789999876653
No 25
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.93 E-value=4e-24 Score=197.38 Aligned_cols=250 Identities=18% Similarity=0.239 Sum_probs=192.2
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
......|.+++|||.+|+++|.+||+.| .|.++.+.+. +|+..|-|||+|.+.+++++||++ +...+..|.|.|-.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEc
Confidence 4456679999999999999999999999 5888666554 599999999999999999999975 88899999999987
Q ss_pred cC-----------------CCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHH
Q 011718 180 SE-----------------TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADY 242 (479)
Q Consensus 180 a~-----------------~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ 242 (479)
+. ....|.|++||+.|++++|.++|+.+-.+-..+.++.+ ..+++.+.|||+|.+.+.|++
T Consensus 83 ~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d--~rgR~tGEAfVqF~sqe~ae~ 160 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD--QRGRPTGEAFVQFESQESAEI 160 (510)
T ss_pred cCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc--CCCCcccceEEEecCHHHHHH
Confidence 63 23568899999999999999999988762233555555 347799999999999999999
Q ss_pred HHHHhhcCccccCCCCceeeecCCC-------------------CC----CC----------------------------
Q 011718 243 SRQKMTSANFKLDGNTPTVSWAEPK-------------------ST----PD---------------------------- 271 (479)
Q Consensus 243 a~~~~~~~~~~~~~~~~~v~~~~~~-------------------~~----~~---------------------------- 271 (479)
|+.... ..+..+-|.|..+... .. ..
T Consensus 161 Al~rhr---e~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~ 237 (510)
T KOG4211|consen 161 ALGRHR---ENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFS 237 (510)
T ss_pred HHHHHH---HhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccc
Confidence 987764 2344444433322100 00 00
Q ss_pred -----------------------ch--h----------hhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCC
Q 011718 272 -----------------------HS--A----------AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGK 316 (479)
Q Consensus 272 -----------------------~~--~----------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~ 316 (479)
.. . ........++.++||+..+..+|..+|+..-. ..|.|....
T Consensus 238 ~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p-~~v~i~ig~ 316 (510)
T KOG4211|consen 238 RYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNP-YRVHIEIGP 316 (510)
T ss_pred cCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCc-eeEEEEeCC
Confidence 00 0 00000257889999999999999999998643 478888788
Q ss_pred CCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCCC
Q 011718 317 SGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTN 360 (479)
Q Consensus 317 ~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~~ 360 (479)
.++ .|-|+|+|.|.++|..|+.. ++..+..+.|.+.+......
T Consensus 317 dGr~TGEAdveF~t~edav~Amsk-d~anm~hrYVElFln~~~ga 360 (510)
T KOG4211|consen 317 DGRATGEADVEFATGEDAVGAMGK-DGANMGHRYVELFLNGAPGA 360 (510)
T ss_pred CCccCCcceeecccchhhHhhhcc-CCcccCcceeeecccCCccc
Confidence 888 89999999999999999985 77888889888887754433
No 26
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.93 E-value=6.3e-24 Score=209.56 Aligned_cols=194 Identities=21% Similarity=0.342 Sum_probs=158.6
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCc-eeEEEEee-cCCCCCceeEEEEEecCHHHHHHHHHHhcC--CCCCCCeee
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGE-VFEVGLVK-DKDSGESKGFAFVAFRSKEVAKRAIDELCS--KDFKGKTIR 176 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~-i~~v~i~~-~~~~g~~~g~afV~F~~~e~a~~Al~~l~~--~~~~g~~l~ 176 (479)
...++|||+|||.++|+++|.++|++++. |+.+.++. ...+++++|||||+|.+.++|..|+..|+. ..+.|+.|.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 35789999999999999999999999864 45554443 234567899999999999999999988764 357899999
Q ss_pred eeccCC-----------CceeeccCCCCCcCHHHHHHHHHhh--CCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHH
Q 011718 177 CSMSET-----------NNRLFIGNVPKSWTEKEFRKVIEDV--GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYS 243 (479)
Q Consensus 177 v~~a~~-----------~~~l~v~nl~~~~~~~~l~~~f~~~--g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a 243 (479)
|.|+.+ .++|||+||+..+++++|+++|+.| |. |..|.+++ +||||+|.+.++|.+|
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~-I~rV~~~r---------gfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGK-VERVKKIR---------DYAFVHFEDREDAVKA 285 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCc-eEEEEeec---------CeEEEEeCCHHHHHHH
Confidence 999864 3579999999999999999999999 88 88887653 5999999999999999
Q ss_pred HHHhhcCccccCCCCceeeecCCCCCCCc------------h---------hhhhhccceEEecCCCCCCCHHHHHHHHh
Q 011718 244 RQKMTSANFKLDGNTPTVSWAEPKSTPDH------------S---------AAAASQVKALYVKNLPENTTTKQLKELFQ 302 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------~---------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 302 (479)
+..|+ ...+.++.|.|.|+.+...... . ........++++.||+++.+.+-|+++|.
T Consensus 286 i~~ln--G~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~ 363 (578)
T TIGR01648 286 MDELN--GKELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPR 363 (578)
T ss_pred HHHhC--CCEECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccc
Confidence 99999 5678999999999987543210 0 01112357899999999999888888888
Q ss_pred cCCC
Q 011718 303 RHGE 306 (479)
Q Consensus 303 ~~G~ 306 (479)
.+|.
T Consensus 364 ~~g~ 367 (578)
T TIGR01648 364 MPGP 367 (578)
T ss_pred cCcc
Confidence 8764
No 27
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.93 E-value=9.2e-24 Score=216.32 Aligned_cols=162 Identities=27% Similarity=0.491 Sum_probs=147.2
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCC----CCee
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFK----GKTI 175 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~----g~~l 175 (479)
....++|||+|||.++|+++|+++|+.||.|.+|.++++. +++++|||||+|.+.++|.+|++.|++..|. |+.|
T Consensus 175 ~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l 253 (562)
T TIGR01628 175 LKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKL 253 (562)
T ss_pred ccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceee
Confidence 3455789999999999999999999999999999999985 4899999999999999999999999999999 9999
Q ss_pred eeeccCC------------------------CceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEE
Q 011718 176 RCSMSET------------------------NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAF 231 (479)
Q Consensus 176 ~v~~a~~------------------------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~af 231 (479)
.|.++.. ..+|||+||+..+++++|+++|+.||. |..+.++.+ .+++++||+|
T Consensus 254 ~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~-i~~~~i~~d--~~g~~~g~gf 330 (562)
T TIGR01628 254 YVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGE-ITSAKVMLD--EKGVSRGFGF 330 (562)
T ss_pred EeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCC-eEEEEEEEC--CCCCcCCeEE
Confidence 9987642 246999999999999999999999999 999999997 5689999999
Q ss_pred EEeCChhHHHHHHHHhhcCccccCCCCceeeecCCC
Q 011718 232 VLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPK 267 (479)
Q Consensus 232 v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~ 267 (479)
|.|.+.++|.+|+..|++ ..+.++.|.|.++..+
T Consensus 331 V~f~~~~~A~~A~~~~~g--~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 331 VCFSNPEEANRAVTEMHG--RMLGGKPLYVALAQRK 364 (562)
T ss_pred EEeCCHHHHHHHHHHhcC--CeeCCceeEEEeccCc
Confidence 999999999999999994 6778899998887654
No 28
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.93 E-value=2.1e-25 Score=191.77 Aligned_cols=152 Identities=29% Similarity=0.548 Sum_probs=139.4
Q ss_pred eEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCCCc
Q 011718 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNN 184 (479)
Q Consensus 105 ~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~~~ 184 (479)
.|||+|||..+++.+|+.||++||+|++|.|+++ |+||...++..|..||..||+-.|+|..|.|+.++.++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 6999999999999999999999999999999976 99999999999999999999999999999988765432
Q ss_pred eeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCceeeec
Q 011718 185 RLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWA 264 (479)
Q Consensus 185 ~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~ 264 (479)
+
T Consensus 76 k------------------------------------------------------------------------------- 76 (346)
T KOG0109|consen 76 K------------------------------------------------------------------------------- 76 (346)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCce
Q 011718 265 EPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYE 344 (479)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~ 344 (479)
.+.+|+|+||.+.++..+|+..|.+||.|..|.|++ +|+||+|.-.++|..|++.|++..
T Consensus 77 --------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk------dy~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 77 --------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK------DYAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred --------------CccccccCCCCccccCHHHhhhhcccCCceeeeeec------ceeEEEEeeccchHHHHhcccccc
Confidence 136899999999999999999999999999999987 789999999999999999999999
Q ss_pred ecCeEEEEEecCCCCCCCC
Q 011718 345 IDGQVLEVALARPQTNKRT 363 (479)
Q Consensus 345 ~~g~~i~v~~a~~~~~~~~ 363 (479)
|.|++++|.++.++-+...
T Consensus 137 ~~gk~m~vq~stsrlrtap 155 (346)
T KOG0109|consen 137 FQGKRMHVQLSTSRLRTAP 155 (346)
T ss_pred cccceeeeeeeccccccCC
Confidence 9999999999988765443
No 29
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.4e-25 Score=202.86 Aligned_cols=172 Identities=27% Similarity=0.463 Sum_probs=150.2
Q ss_pred ceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCcc-ccCCCCceee
Q 011718 184 NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANF-KLDGNTPTVS 262 (479)
Q Consensus 184 ~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~-~~~~~~~~v~ 262 (479)
-++||+-+|+.|++.+|+.+|++||. |.+|.|++| +.++.++|+|||.|.++++|.+|+.+|+.... .-....+.|.
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~-V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGN-VYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCc-eeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 47999999999999999999999999 999999999 57789999999999999999999999986443 2335677788
Q ss_pred ecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcC
Q 011718 263 WAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTE 341 (479)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~ 341 (479)
++....... ...++|||+-|+..+|+.+|+++|++||.|++|.|.++..+. ||||||+|.+.+.|..||+.||
T Consensus 113 ~Ad~E~er~------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~n 186 (510)
T KOG0144|consen 113 YADGERERI------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALN 186 (510)
T ss_pred ccchhhhcc------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhc
Confidence 877654432 224789999999999999999999999999999999999988 9999999999999999999999
Q ss_pred Cc-eecC--eEEEEEecCCCCCCCC
Q 011718 342 KY-EIDG--QVLEVALARPQTNKRT 363 (479)
Q Consensus 342 ~~-~~~g--~~i~v~~a~~~~~~~~ 363 (479)
+. ++.| .+|.|+||.++..+..
T Consensus 187 g~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 187 GTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred cceeeccCCCceEEEecccCCCchH
Confidence 85 5655 6899999998776543
No 30
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.7e-23 Score=190.50 Aligned_cols=162 Identities=23% Similarity=0.442 Sum_probs=141.9
Q ss_pred CCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCcee
Q 011718 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTV 261 (479)
Q Consensus 182 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 261 (479)
..+.|||+.||.++.+++|.-+|++.|+ |-.++||.|| .++.+||||||.|++.+.|..|++.|+...+. .|+.|.|
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~-I~elRLMmD~-~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igv 158 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGK-IYELRLMMDP-FSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGV 158 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccc-eeeEEEeecc-cCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEE
Confidence 3578999999999999999999999999 9999999995 67999999999999999999999999965443 5788887
Q ss_pred eecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCC-CEEEEEccCCCC--CC-CceEEEEeCChHHHHHHH
Q 011718 262 SWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHG-EVTKVVTPPGKS--GK-RDFGFIHYAERSSALKAI 337 (479)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~v~~~~~~~--~~-~g~~fV~f~~~~~a~~a~ 337 (479)
..+.. +++|||+|||...++++|.+.|++.+ .|++|.|..... ++ ||||||+|.++..|..|.
T Consensus 159 c~Sva-------------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aR 225 (506)
T KOG0117|consen 159 CVSVA-------------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMAR 225 (506)
T ss_pred EEeee-------------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHH
Confidence 76433 58999999999999999999999987 677777765554 33 999999999999999999
Q ss_pred HhcCC--ceecCeEEEEEecCCCC
Q 011718 338 KDTEK--YEIDGQVLEVALARPQT 359 (479)
Q Consensus 338 ~~~~~--~~~~g~~i~v~~a~~~~ 359 (479)
++|-. ..|.|+.|.|.||.+..
T Consensus 226 rKl~~g~~klwgn~~tVdWAep~~ 249 (506)
T KOG0117|consen 226 RKLMPGKIKLWGNAITVDWAEPEE 249 (506)
T ss_pred hhccCCceeecCCcceeeccCccc
Confidence 88763 57899999999999875
No 31
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=2.3e-25 Score=178.71 Aligned_cols=171 Identities=25% Similarity=0.372 Sum_probs=149.6
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~ 181 (479)
...||||+||+..+|++-|.++|-+.|+|++++|.+++.+...+|||||+|.++++|+-|++-||...|.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 45689999999999999999999999999999999999999999999999999999999999999889999999997764
Q ss_pred CCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCcee
Q 011718 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTV 261 (479)
Q Consensus 182 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 261 (479)
...+ +
T Consensus 88 ~~~~-----------------------------------------------------------------n---------- 92 (203)
T KOG0131|consen 88 AHQK-----------------------------------------------------------------N---------- 92 (203)
T ss_pred cccc-----------------------------------------------------------------c----------
Confidence 2100 0
Q ss_pred eecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEE-EEccCCCCC-C-CceEEEEeCChHHHHHHHH
Q 011718 262 SWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSG-K-RDFGFIHYAERSSALKAIK 338 (479)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-v~~~~~~~~-~-~g~~fV~f~~~~~a~~a~~ 338 (479)
..-+.+|||+||.+.+++..|.+.|+.||.+.. -.|+++..+ . ++||||.|.+.+.+.+|+.
T Consensus 93 ---------------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~ 157 (203)
T KOG0131|consen 93 ---------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIG 157 (203)
T ss_pred ---------------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHH
Confidence 000257999999999999999999999998775 466666663 3 8999999999999999999
Q ss_pred hcCCceecCeEEEEEecCCCCCCC
Q 011718 339 DTEKYEIDGQVLEVALARPQTNKR 362 (479)
Q Consensus 339 ~~~~~~~~g~~i~v~~a~~~~~~~ 362 (479)
.||+..++.++|.|.++..+..+.
T Consensus 158 s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 158 SMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred HhccchhcCCceEEEEEEecCCCc
Confidence 999999999999999998876543
No 32
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.93 E-value=3.3e-24 Score=194.72 Aligned_cols=177 Identities=27% Similarity=0.496 Sum_probs=151.9
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~ 181 (479)
+.++|||++|+|++|++.|+++|.+||.|..|.+++++.+++++||+||+|.+.+.+.++|.. ..+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 678999999999999999999999999999999999999999999999999999999999964 6677888888877665
Q ss_pred CCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCcee
Q 011718 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTV 261 (479)
Q Consensus 182 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 261 (479)
++..- ....+
T Consensus 84 ~r~~~----------------------------------~~~~~------------------------------------ 93 (311)
T KOG4205|consen 84 SREDQ----------------------------------TKVGR------------------------------------ 93 (311)
T ss_pred Ccccc----------------------------------ccccc------------------------------------
Confidence 43210 00000
Q ss_pred eecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHHHHh
Q 011718 262 SWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKD 339 (479)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~ 339 (479)
....++|||++||.++++++|++.|.+||.|..+.++.+.... ++|+||.|.+.+.+.+++.
T Consensus 94 ---------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~- 157 (311)
T KOG4205|consen 94 ---------------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL- 157 (311)
T ss_pred ---------------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-
Confidence 0024789999999999999999999999999999999988755 8999999999999999887
Q ss_pred cCCceecCeEEEEEecCCCCCCCCCC
Q 011718 340 TEKYEIDGQVLEVALARPQTNKRTEG 365 (479)
Q Consensus 340 ~~~~~~~g~~i~v~~a~~~~~~~~~~ 365 (479)
.+-+.|+++.|.|..|.++.......
T Consensus 158 ~~f~~~~gk~vevkrA~pk~~~~~~~ 183 (311)
T KOG4205|consen 158 QKFHDFNGKKVEVKRAIPKEVMQSTK 183 (311)
T ss_pred cceeeecCceeeEeeccchhhccccc
Confidence 58899999999999999998776553
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=8.7e-24 Score=211.67 Aligned_cols=173 Identities=22% Similarity=0.407 Sum_probs=147.3
Q ss_pred CCCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCce
Q 011718 181 ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260 (479)
Q Consensus 181 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 260 (479)
...++|||+|||..+++++|+++|..||. |..|.++.+ ..+++++|||||+|.+.++|.+|+. |+ +..+.++.|.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~-v~~v~i~~d-~~~~~skg~afVeF~~~e~A~~Al~-l~--g~~~~g~~i~ 161 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGK-VRDVQCIKD-RNSRRSKGVAYVEFYDVESVIKALA-LT--GQMLLGRPII 161 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEeec-CCCCCcceEEEEEECCHHHHHHHHH-hC--CCEECCeeeE
Confidence 34678999999999999999999999997 999999998 4678999999999999999999986 55 5667888888
Q ss_pred eeecCCCCCCCch-----hhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCC-C-CceEEEEeCChHHH
Q 011718 261 VSWAEPKSTPDHS-----AAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-K-RDFGFIHYAERSSA 333 (479)
Q Consensus 261 v~~~~~~~~~~~~-----~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~-~-~g~~fV~f~~~~~a 333 (479)
|.+.......... ........+|||+|||..+|+++|+++|++||.|..|.|..+..+ . +|||||+|.+.++|
T Consensus 162 v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 162 VQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred EeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 8776433221110 001122579999999999999999999999999999999988765 4 89999999999999
Q ss_pred HHHHHhcCCceecCeEEEEEecCCC
Q 011718 334 LKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 334 ~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
.+|+..|++..|.|+.|.|.++...
T Consensus 242 ~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 242 KEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHHhcCCcEECCEEEEEEEccCC
Confidence 9999999999999999999998743
No 34
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=2.3e-23 Score=176.21 Aligned_cols=171 Identities=26% Similarity=0.477 Sum_probs=154.1
Q ss_pred CCCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCce
Q 011718 181 ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260 (479)
Q Consensus 181 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 260 (479)
..+..|.|..||..+|.++|+.+|...|+ |++|.+++| +.++.+-||+||.|.++.+|++|+..|+ ++.+..+.|+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGe-iEScKLvRD-KitGqSLGYGFVNYv~p~DAe~AintlN--GLrLQ~KTIK 114 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTLN--GLRLQNKTIK 114 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccc-eeeeeeeec-cccccccccceeeecChHHHHHHHhhhc--ceeeccceEE
Confidence 45678999999999999999999999999 999999999 6889999999999999999999999999 7889999999
Q ss_pred eeecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHHHH
Q 011718 261 VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIK 338 (479)
Q Consensus 261 v~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~ 338 (479)
|.++.|.+.. .....|||.+||..+|..+|.++|++||.|..-+|..+..+. ||.+||.|+...+|..||.
T Consensus 115 VSyARPSs~~-------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk 187 (360)
T KOG0145|consen 115 VSYARPSSDS-------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIK 187 (360)
T ss_pred EEeccCChhh-------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHH
Confidence 9999987653 334689999999999999999999999998887777776644 9999999999999999999
Q ss_pred hcCCceecC--eEEEEEecCCCCCCC
Q 011718 339 DTEKYEIDG--QVLEVALARPQTNKR 362 (479)
Q Consensus 339 ~~~~~~~~g--~~i~v~~a~~~~~~~ 362 (479)
.|||+.--| .+|.|.||..+....
T Consensus 188 ~lNG~~P~g~tepItVKFannPsq~t 213 (360)
T KOG0145|consen 188 GLNGQKPSGCTEPITVKFANNPSQKT 213 (360)
T ss_pred hccCCCCCCCCCCeEEEecCCccccc
Confidence 999987766 589999998775443
No 35
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=6.7e-22 Score=168.05 Aligned_cols=262 Identities=23% Similarity=0.350 Sum_probs=164.5
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCC-CCC--Ceee
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKD-FKG--KTIR 176 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~-~~g--~~l~ 176 (479)
..+.++|||+-|...-.|++++.+|..||.|.+|.+.+... |.+||||||.|.+.-+|..||..||+.. +-| ..|.
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 33567899999999999999999999999999999999877 9999999999999999999999999874 444 5788
Q ss_pred eeccCCCce---------------------------------------ee----ccCCCCCcCH-HHHHH---HHHhhCC
Q 011718 177 CSMSETNNR---------------------------------------LF----IGNVPKSWTE-KEFRK---VIEDVGP 209 (479)
Q Consensus 177 v~~a~~~~~---------------------------------------l~----v~nl~~~~~~-~~l~~---~f~~~g~ 209 (479)
|+++...+. +. ...|.+-++. ....+ .+..-|-
T Consensus 95 VK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl 174 (371)
T KOG0146|consen 95 VKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGL 174 (371)
T ss_pred EEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccc
Confidence 888764211 00 0112221111 11111 1111110
Q ss_pred ---ceeEEEeeeCCCC------CCCC-----cce-EEEEeCChhHHHHHHHHhhcCccccCCCCc---------------
Q 011718 210 ---GVDTIELIKDPQA------PSRN-----RGF-AFVLYYNNACADYSRQKMTSANFKLDGNTP--------------- 259 (479)
Q Consensus 210 ---~i~~~~~~~~~~~------~~~~-----~g~-afv~f~~~~~a~~a~~~~~~~~~~~~~~~~--------------- 259 (479)
.|....-...|.. .+.. .+| +.+.+.+...+..++-...-..+......+
T Consensus 175 ~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~ 254 (371)
T KOG0146|consen 175 AAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYA 254 (371)
T ss_pred ccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHh
Confidence 0000000000000 0000 111 112222222222222111110110000000
Q ss_pred ----------eeeecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEe
Q 011718 260 ----------TVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHY 327 (479)
Q Consensus 260 ----------~v~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f 327 (479)
...+..+..........-...++|||..||..+.+.+|.+.|-.||.|++.+++.++.++ |+|+||.|
T Consensus 255 Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSf 334 (371)
T KOG0146|consen 255 AAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSF 334 (371)
T ss_pred hhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEec
Confidence 000000000000011112336899999999999999999999999999999888888766 99999999
Q ss_pred CChHHHHHHHHhcCCceecCeEEEEEecCCCCCCC
Q 011718 328 AERSSALKAIKDTEKYEIDGQVLEVALARPQTNKR 362 (479)
Q Consensus 328 ~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~~~~ 362 (479)
+|+.+|+.||..|||+.|+-++|+|.+.+++...+
T Consensus 335 DNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 335 DNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred CCchhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 99999999999999999999999999999987643
No 36
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.87 E-value=2.2e-21 Score=197.16 Aligned_cols=169 Identities=18% Similarity=0.310 Sum_probs=133.8
Q ss_pred cCCCceeeccCCCCCcCHHHHHHHHHhhC-----------CceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhh
Q 011718 180 SETNNRLFIGNVPKSWTEKEFRKVIEDVG-----------PGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMT 248 (479)
Q Consensus 180 a~~~~~l~v~nl~~~~~~~~l~~~f~~~g-----------~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~ 248 (479)
....++|||+|||+.+++++|..+|..+. ..|..+.+ .+.++||||+|.+.++|..|+ .|+
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-------~~~kg~afVeF~~~e~A~~Al-~l~ 243 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-------NKEKNFAFLEFRTVEEATFAM-ALD 243 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-------CCCCCEEEEEeCCHHHHhhhh-cCC
Confidence 34567999999999999999999999862 21333332 446799999999999999998 476
Q ss_pred cCccccCCCCceeeecCCCCCCC----------------------chhhhhhccceEEecCCCCCCCHHHHHHHHhcCCC
Q 011718 249 SANFKLDGNTPTVSWAEPKSTPD----------------------HSAAAASQVKALYVKNLPENTTTKQLKELFQRHGE 306 (479)
Q Consensus 249 ~~~~~~~~~~~~v~~~~~~~~~~----------------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~ 306 (479)
++.+.++.|.|.+........ .........++|||+|||+.+|+++|+++|+.||.
T Consensus 244 --g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~ 321 (509)
T TIGR01642 244 --SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD 321 (509)
T ss_pred --CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 566778888776443221000 00001223478999999999999999999999999
Q ss_pred EEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 307 VTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 307 v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
|..+.|+.+.. +. +|||||+|.+.++|..||..|++..|+|+.|.|.++...
T Consensus 322 i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 322 LKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred eeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 99999988764 33 899999999999999999999999999999999999754
No 37
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.87 E-value=1.4e-21 Score=188.23 Aligned_cols=225 Identities=26% Similarity=0.397 Sum_probs=178.5
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
+.....+|||+|||+.+|+++|+.+| |||.|...+.|.+|...++++.+.|+-|+|.
T Consensus 223 ~i~etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvl 279 (725)
T KOG0110|consen 223 DISETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVL 279 (725)
T ss_pred HHHhhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeeec
Confidence 34467789999999999999999998 7899999999999999999999999988876
Q ss_pred ccC-----------------------------------------------------------------------------
Q 011718 179 MSE----------------------------------------------------------------------------- 181 (479)
Q Consensus 179 ~a~----------------------------------------------------------------------------- 181 (479)
+..
T Consensus 280 p~~~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr 359 (725)
T KOG0110|consen 280 PSKEKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETR 359 (725)
T ss_pred CcchhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhh
Confidence 643
Q ss_pred ------------------------CCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCCh
Q 011718 182 ------------------------TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNN 237 (479)
Q Consensus 182 ------------------------~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~ 237 (479)
....++++|||..+..+.|..+|..||+ |..+.+. | .-.-++|.|.+.
T Consensus 360 ~~~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~-i~rvllp--~-----~G~~aiv~fl~p 431 (725)
T KOG0110|consen 360 VVQEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGE-IGRVLLP--P-----GGTGAIVEFLNP 431 (725)
T ss_pred hchhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccc-cceeecC--c-----ccceeeeeecCc
Confidence 1246889999999999999999999999 8888433 2 123489999999
Q ss_pred hHHHHHHHHhhcCccccCCCCceeeecCCCCCC-------------C-------------------chh-----------
Q 011718 238 ACADYSRQKMTSANFKLDGNTPTVSWAEPKSTP-------------D-------------------HSA----------- 274 (479)
Q Consensus 238 ~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~-------------------~~~----------- 274 (479)
.+|..|+..|.-. .+....+.+.|+...... . ...
T Consensus 432 ~eAr~Afrklays--r~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a 509 (725)
T KOG0110|consen 432 LEARKAFRKLAYS--RFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVA 509 (725)
T ss_pred cchHHHHHHhchh--hhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhh
Confidence 9999999998733 333334434443211000 0 000
Q ss_pred hhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-----CceEEEEeCChHHHHHHHHhcCCceecCeE
Q 011718 275 AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-----RDFGFIHYAERSSALKAIKDTEKYEIDGQV 349 (479)
Q Consensus 275 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~ 349 (479)
......++|||.||++.+|.+.|..+|...|.|..|.|...+... .|||||+|.+.++|+.|++.|+|+.|+|+.
T Consensus 510 ~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~ 589 (725)
T KOG0110|consen 510 EDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHK 589 (725)
T ss_pred hccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCce
Confidence 000112349999999999999999999999999999888776542 599999999999999999999999999999
Q ss_pred EEEEecC
Q 011718 350 LEVALAR 356 (479)
Q Consensus 350 i~v~~a~ 356 (479)
|.|+++.
T Consensus 590 l~lk~S~ 596 (725)
T KOG0110|consen 590 LELKISE 596 (725)
T ss_pred EEEEecc
Confidence 9999998
No 38
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=5.5e-21 Score=169.43 Aligned_cols=173 Identities=24% Similarity=0.466 Sum_probs=152.0
Q ss_pred CceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCceee
Q 011718 183 NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVS 262 (479)
Q Consensus 183 ~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 262 (479)
-++|||+.+.+.+.++.|+..|..||+ |.+|.+.+|| .++++++|+||+|.-.+.|..|+..|+ ...++||.|.|.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGP-IKSInMSWDp-~T~kHKgFAFVEYEvPEaAqLAlEqMN--g~mlGGRNiKVg 188 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWDP-ATGKHKGFAFVEYEVPEAAQLALEQMN--GQMLGGRNIKVG 188 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCC-cceeeccccc-ccccccceEEEEEeCcHHHHHHHHHhc--cccccCcccccc
Confidence 378999999999999999999999999 9999999996 789999999999999999999999999 678999999998
Q ss_pred ecCCCCCCCch----hhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHH
Q 011718 263 WAEPKSTPDHS----AAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKA 336 (479)
Q Consensus 263 ~~~~~~~~~~~----~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a 336 (479)
..........- ......-++|||..+.+++++++|+.+|+.||.|++|.+-+...++ |||+||+|.+..+...|
T Consensus 189 rPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eA 268 (544)
T KOG0124|consen 189 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 268 (544)
T ss_pred CCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHH
Confidence 65443322211 1122335799999999999999999999999999999999998866 99999999999999999
Q ss_pred HHhcCCceecCeEEEEEecCCCC
Q 011718 337 IKDTEKYEIDGQVLEVALARPQT 359 (479)
Q Consensus 337 ~~~~~~~~~~g~~i~v~~a~~~~ 359 (479)
|..||-+.|+|..|+|-.+-.+.
T Consensus 269 iasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 269 IASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred hhhcchhhcccceEecccccCCC
Confidence 99999999999999998776544
No 39
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.85 E-value=5.3e-20 Score=165.81 Aligned_cols=247 Identities=24% Similarity=0.297 Sum_probs=192.8
Q ss_pred CCCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCC--CCCCCee
Q 011718 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSK--DFKGKTI 175 (479)
Q Consensus 98 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~--~~~g~~l 175 (479)
....+++.|.++|||+++||.+|..++.+||.|+.+.+.+.++ .|||+|.+.++|...+...... .+.++.|
T Consensus 23 ~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~ 96 (492)
T KOG1190|consen 23 SMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPI 96 (492)
T ss_pred cccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcce
Confidence 3344788999999999999999999999999999999877533 7999999999998844332222 3556666
Q ss_pred eeeccC----------------------------------------------CCceeeccCCCCCcCHHHHHHHHHhhCC
Q 011718 176 RCSMSE----------------------------------------------TNNRLFIGNVPKSWTEKEFRKVIEDVGP 209 (479)
Q Consensus 176 ~v~~a~----------------------------------------------~~~~l~v~nl~~~~~~~~l~~~f~~~g~ 209 (479)
.|.++. +--+++|.++-+.++-+-|..+|++||.
T Consensus 97 yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~ 176 (492)
T KOG1190|consen 97 YIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF 176 (492)
T ss_pred eehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce
Confidence 665532 0125778899999999999999999999
Q ss_pred ceeEEEeeeCCCCCCCCcce-EEEEeCChhHHHHHHHHhhcCccccCCCCceeeecCCCC----------C--------C
Q 011718 210 GVDTIELIKDPQAPSRNRGF-AFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKS----------T--------P 270 (479)
Q Consensus 210 ~i~~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~----------~--------~ 270 (479)
|..|.-+. ++.+| |.|+|.+...|..|..+|.++++....+.+++.+++-.. . .
T Consensus 177 -VlKIiTF~------Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~ 249 (492)
T KOG1190|consen 177 -VLKIITFT------KNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPV 249 (492)
T ss_pred -eEEEEEEe------cccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCC
Confidence 66554332 23445 889999999999999999999988888888877765220 0 0
Q ss_pred C---------------------------ch---------hhhhh--ccceEEecCCC-CCCCHHHHHHHHhcCCCEEEEE
Q 011718 271 D---------------------------HS---------AAAAS--QVKALYVKNLP-ENTTTKQLKELFQRHGEVTKVV 311 (479)
Q Consensus 271 ~---------------------------~~---------~~~~~--~~~~l~v~nl~-~~~~~~~l~~~f~~~G~v~~v~ 311 (479)
. +. ..... .+..|.|.||. ..+|.+.|..+|.-||.|.+|.
T Consensus 250 gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVk 329 (492)
T KOG1190|consen 250 GDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVK 329 (492)
T ss_pred CccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEE
Confidence 0 00 00000 14678888886 4679999999999999999999
Q ss_pred ccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCCC
Q 011718 312 TPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTN 360 (479)
Q Consensus 312 ~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~~ 360 (479)
|...+. --|.|.|.+...|..|+..|+|+.|.|++|+|.+++-...
T Consensus 330 il~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 330 ILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNV 375 (492)
T ss_pred eeecCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccc
Confidence 998875 4799999999999999999999999999999999986544
No 40
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.83 E-value=4.8e-19 Score=148.82 Aligned_cols=209 Identities=18% Similarity=0.354 Sum_probs=149.4
Q ss_pred CCCCeEEECCCCCCCCHHHHHH----hhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeee
Q 011718 101 PHGSEVFIGGLPKDASEEDLRD----LCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIR 176 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~----~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~ 176 (479)
.+..||||.||+..+..++|+. ||++||.|..|..++. .+.+|.|||.|.+.+.|..|+..|+|..+.|+.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3445999999999999999998 9999999999988764 67899999999999999999999999999999999
Q ss_pred eeccCCCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCC
Q 011718 177 CSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG 256 (479)
Q Consensus 177 v~~a~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 256 (479)
|.+|..+..++..--+..+..+ .......+...+.. ....+..+. ++.
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~----------~k~~~~~~~~~~~~-~~~ng~~~~--------------~~~------- 131 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKE----------KKINGEILARIKQP-LDTNGHFYN--------------MNR------- 131 (221)
T ss_pred eecccCccchhhccCceecccc----------CccccccccccCCc-ccccccccc--------------ccc-------
Confidence 9999987765543211000000 00000000000000 000000000 000
Q ss_pred CCceeeecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHH
Q 011718 257 NTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKA 336 (479)
Q Consensus 257 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a 336 (479)
..+...+ ......++.+||+.|||..++.+.|..+|.+|.....|+++.... ++|||+|.+...|..|
T Consensus 132 ~~~p~p~---------~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~---~iAfve~~~d~~a~~a 199 (221)
T KOG4206|consen 132 MNLPPPF---------LAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRS---GIAFVEFLSDRQASAA 199 (221)
T ss_pred ccCCCCc---------cccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCC---ceeEEecchhhhhHHH
Confidence 0000000 011234468999999999999999999999999999999988663 7999999999999999
Q ss_pred HHhcCCceec-CeEEEEEecC
Q 011718 337 IKDTEKYEID-GQVLEVALAR 356 (479)
Q Consensus 337 ~~~~~~~~~~-g~~i~v~~a~ 356 (479)
...+.+..|- ...+.|.++.
T Consensus 200 ~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 200 QQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hhhhccceeccCceEEecccC
Confidence 9999988776 7888888764
No 41
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.79 E-value=1.3e-17 Score=150.57 Aligned_cols=239 Identities=18% Similarity=0.221 Sum_probs=190.9
Q ss_pred CeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCC--CeeeeeccC
Q 011718 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKG--KTIRCSMSE 181 (479)
Q Consensus 104 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g--~~l~v~~a~ 181 (479)
-+++|.|+-+-+|-+-|..+|++||.|..|.-... ...=.|+|+|.+.+.|..|...|+|..|.. ..|+|.+++
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 35789999999999999999999999988765432 223359999999999999999999987754 355665543
Q ss_pred -------------------------------------------------------------------C--CceeeccCCC
Q 011718 182 -------------------------------------------------------------------T--NNRLFIGNVP 192 (479)
Q Consensus 182 -------------------------------------------------------------------~--~~~l~v~nl~ 192 (479)
. +..|.|.||.
T Consensus 227 lt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln 306 (492)
T KOG1190|consen 227 LTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLN 306 (492)
T ss_pred cccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCc
Confidence 0 2456677775
Q ss_pred -CCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCceeeecCCCCCCC
Q 011718 193 -KSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD 271 (479)
Q Consensus 193 -~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 271 (479)
..+|.+.|..+|..||. |..|.|+... +--|.|++.+...|..|+..|. ++.+.++.|+|.+++......
T Consensus 307 ~~~VT~d~LftlFgvYGd-VqRVkil~nk------kd~ALIQmsd~~qAqLA~~hL~--g~~l~gk~lrvt~SKH~~vql 377 (492)
T KOG1190|consen 307 EEAVTPDVLFTLFGVYGD-VQRVKILYNK------KDNALIQMSDGQQAQLAMEHLE--GHKLYGKKLRVTLSKHTNVQL 377 (492)
T ss_pred hhccchhHHHHHHhhhcc-eEEEEeeecC------CcceeeeecchhHHHHHHHHhh--cceecCceEEEeeccCccccC
Confidence 45999999999999999 9999998862 2679999999999999999999 678889999999887653221
Q ss_pred chh----------------------------hhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceE
Q 011718 272 HSA----------------------------AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFG 323 (479)
Q Consensus 272 ~~~----------------------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~ 323 (479)
... ....++.+|++.|||.++++++|+.+|...|..++......+. +.+|
T Consensus 378 p~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd--~kma 455 (492)
T KOG1190|consen 378 PREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKD--RKMA 455 (492)
T ss_pred CCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCC--ccee
Confidence 110 1123457899999999999999999999998776554433322 3699
Q ss_pred EEEeCChHHHHHHHHhcCCceecC-eEEEEEecCC
Q 011718 324 FIHYAERSSALKAIKDTEKYEIDG-QVLEVALARP 357 (479)
Q Consensus 324 fV~f~~~~~a~~a~~~~~~~~~~g-~~i~v~~a~~ 357 (479)
++.+.+.++|..|+..+|++.++. ..|+|+|++.
T Consensus 456 l~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 456 LPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 999999999999999999999876 5899999875
No 42
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.78 E-value=4.3e-18 Score=139.88 Aligned_cols=81 Identities=22% Similarity=0.459 Sum_probs=75.2
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCC-C-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~-~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
+++|||+|||+.+|+++|+++|++||.|.+|.|+.+..+ + +|||||+|.+.++|++||..|+++.|+|+.|+|.++..
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~ 113 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAND 113 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCc
Confidence 578999999999999999999999999999999988753 3 89999999999999999999999999999999999987
Q ss_pred CCC
Q 011718 358 QTN 360 (479)
Q Consensus 358 ~~~ 360 (479)
+..
T Consensus 114 ~~~ 116 (144)
T PLN03134 114 RPS 116 (144)
T ss_pred CCC
Confidence 644
No 43
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.77 E-value=7.9e-18 Score=149.01 Aligned_cols=205 Identities=22% Similarity=0.345 Sum_probs=144.4
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCcee--------EEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCC
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVF--------EVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF 170 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~--------~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~ 170 (479)
.+..++.|||.|||.++|.+++.++|++||.|. .|+|.++.. |..+|-|++.|...+++..|++.|++..|
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccc
Confidence 456778899999999999999999999999874 589999977 99999999999999999999999999999
Q ss_pred CCCeeeeeccCCCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcC
Q 011718 171 KGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSA 250 (479)
Q Consensus 171 ~g~~l~v~~a~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 250 (479)
.|+.|+|..|+-. .-|. .. ..++.++-+ ....+ +..+
T Consensus 209 rg~~~rVerAkfq----------------------~Kge----~~------~~~k~k~k~-------~~~kk-~~k~--- 245 (382)
T KOG1548|consen 209 RGKKLRVERAKFQ----------------------MKGE----YD------ASKKEKGKC-------KDKKK-LKKQ--- 245 (382)
T ss_pred cCcEEEEehhhhh----------------------hccC----cC------ccccccccc-------ccHHH-HHHH---
Confidence 9999999988621 1111 00 000000000 00000 0111
Q ss_pred ccccCCCCceeeecCCCCCCCchhhhhhccceEEecCCCC----CCC-------HHHHHHHHhcCCCEEEEEccCCCCCC
Q 011718 251 NFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPE----NTT-------TKQLKELFQRHGEVTKVVTPPGKSGK 319 (479)
Q Consensus 251 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~v~nl~~----~~~-------~~~l~~~f~~~G~v~~v~~~~~~~~~ 319 (479)
...+.+-...- ..+. .....++|.|.||=. ..+ .++|++-+.+||.|.+|.|......
T Consensus 246 q~k~~dw~pd~--~~~s--------k~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPd- 314 (382)
T KOG1548|consen 246 QQKLLDWRPDR--DDPS--------KARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPD- 314 (382)
T ss_pred HHhhcccCCCc--cccc--------cccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCC-
Confidence 11111111110 0011 112247888888732 223 3667777999999999988754433
Q ss_pred CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCC
Q 011718 320 RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQT 359 (479)
Q Consensus 320 ~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~ 359 (479)
|.+-|.|.+.++|..||+.|+|..|+||.|..++...+.
T Consensus 315 -GvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 315 -GVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred -ceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 899999999999999999999999999999998876543
No 44
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.75 E-value=4.3e-17 Score=145.84 Aligned_cols=254 Identities=15% Similarity=0.194 Sum_probs=186.4
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
...+..|..++|||..++.+|..+|+..-...-.+.+.....|+..|+|.|.|.+.+.-+.|++. +.+.+.++.|.|..
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYk 135 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYK 135 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeec
Confidence 34556789999999999999999997653222222222223378889999999999999999986 88889999999987
Q ss_pred cCC----------------------CceeeccCCCCCcCHHHHHHHHHhhCC---ceeEEEeeeCCCCCCCCcceEEEEe
Q 011718 180 SET----------------------NNRLFIGNVPKSWTEKEFRKVIEDVGP---GVDTIELIKDPQAPSRNRGFAFVLY 234 (479)
Q Consensus 180 a~~----------------------~~~l~v~nl~~~~~~~~l~~~f~~~g~---~i~~~~~~~~~~~~~~~~g~afv~f 234 (479)
+.. .-.|.+++||++++..++..+|....+ ..+.+-.++ ...++..|-|||.|
T Consensus 136 a~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~--rpdgrpTGdAFvlf 213 (508)
T KOG1365|consen 136 ATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT--RPDGRPTGDAFVLF 213 (508)
T ss_pred cCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE--CCCCCcccceEEEe
Confidence 652 124677999999999999999975433 134444444 34699999999999
Q ss_pred CChhHHHHHHHHhhcCccccCCCCceeeecCC----------------------CCC--CCchhhhhhccceEEecCCCC
Q 011718 235 YNNACADYSRQKMTSANFKLDGNTPTVSWAEP----------------------KST--PDHSAAAASQVKALYVKNLPE 290 (479)
Q Consensus 235 ~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~----------------------~~~--~~~~~~~~~~~~~l~v~nl~~ 290 (479)
..++.|..|+..... .++.|.|.+..+.. ... +...........+|.+++||+
T Consensus 214 a~ee~aq~aL~khrq---~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy 290 (508)
T KOG1365|consen 214 ACEEDAQFALRKHRQ---NIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPY 290 (508)
T ss_pred cCHHHHHHHHHHHHH---HHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCCh
Confidence 999999998876542 12222221111110 000 000011122257899999999
Q ss_pred CCCHHHHHHHHhcCC-CEEE--EEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCC
Q 011718 291 NTTTKQLKELFQRHG-EVTK--VVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQT 359 (479)
Q Consensus 291 ~~~~~~l~~~f~~~G-~v~~--v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~ 359 (479)
..+.++|.+||..|- .|.. |.++.+..|+ .|-|||+|.+.+.|..|....+++....|.|.|.-+.-..
T Consensus 291 ~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ee 363 (508)
T KOG1365|consen 291 EATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEE 363 (508)
T ss_pred hhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHH
Confidence 999999999999886 3443 8888888888 8999999999999999999999888889999998876543
No 45
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.74 E-value=2.1e-16 Score=146.73 Aligned_cols=169 Identities=18% Similarity=0.227 Sum_probs=135.5
Q ss_pred ceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCceeee
Q 011718 184 NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSW 263 (479)
Q Consensus 184 ~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 263 (479)
..|.+++|||.+|+++|.++|+.+. |+++.+.+ .+++..|-|||+|.+.+++.+|++.-. ..+..+-|.|-.
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~--I~~~~~~r---~~Gr~sGeA~Ve~~seedv~~AlkkdR---~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG--IENLEIPR---RNGRPSGEAYVEFTSEEDVEKALKKDR---ESMGHRYIEVFT 82 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc--eeEEEEec---cCCCcCcceEEEeechHHHHHHHHhhH---HHhCCceEEEEc
Confidence 4577899999999999999999998 88866654 469999999999999999999988764 457788888877
Q ss_pred cCCCCCCCchh--hh--hhccceEEecCCCCCCCHHHHHHHHhcCCCEEE-EEccCCCCCC-CceEEEEeCChHHHHHHH
Q 011718 264 AEPKSTPDHSA--AA--ASQVKALYVKNLPENTTTKQLKELFQRHGEVTK-VVTPPGKSGK-RDFGFIHYAERSSALKAI 337 (479)
Q Consensus 264 ~~~~~~~~~~~--~~--~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-v~~~~~~~~~-~g~~fV~f~~~~~a~~a~ 337 (479)
+.......... .. ......|.+++||+.||+++|.+||+..-.|.. |.++.+..++ .|-|||+|++.+.|++||
T Consensus 83 ~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred cCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHH
Confidence 65443321110 01 123568999999999999999999998766655 6677777777 899999999999999999
Q ss_pred HhcCCceecCeEEEEEecCCCCCC
Q 011718 338 KDTEKYEIDGQVLEVALARPQTNK 361 (479)
Q Consensus 338 ~~~~~~~~~g~~i~v~~a~~~~~~ 361 (479)
.. |...|+.+.|.|..+.....+
T Consensus 163 ~r-hre~iGhRYIEvF~Ss~~e~~ 185 (510)
T KOG4211|consen 163 GR-HRENIGHRYIEVFRSSRAEVK 185 (510)
T ss_pred HH-HHHhhccceEEeehhHHHHHH
Confidence 95 778999999999888655433
No 46
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=1e-17 Score=137.67 Aligned_cols=84 Identities=31% Similarity=0.614 Sum_probs=79.4
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
...+++|||+|||+++|+++|+++|++||.|.+|.|+.+..|++++|||||+|.+.++|++||+.|++..|.|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 011718 180 SETN 183 (479)
Q Consensus 180 a~~~ 183 (479)
+..+
T Consensus 111 a~~~ 114 (144)
T PLN03134 111 ANDR 114 (144)
T ss_pred CCcC
Confidence 8754
No 47
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=4.1e-17 Score=131.49 Aligned_cols=142 Identities=23% Similarity=0.430 Sum_probs=125.5
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
...++|||+|||.++.+.+|.+||.+||.|..|.|... -....||||+|.+..+|+.||.--++-.+.|..|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45789999999999999999999999999999988543 235679999999999999999999999999999999997
Q ss_pred CC--------------------------------CceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcc
Q 011718 181 ET--------------------------------NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRG 228 (479)
Q Consensus 181 ~~--------------------------------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g 228 (479)
.. ...|.|.+||...+.++|+..+.+.|. |-...+.+| +
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGd-vCfadv~rD--------g 151 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGD-VCFADVQRD--------G 151 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCC-eeeeeeecc--------c
Confidence 52 357999999999999999999999998 888888887 5
Q ss_pred eEEEEeCChhHHHHHHHHhhcCcccc
Q 011718 229 FAFVLYYNNACADYSRQKMTSANFKL 254 (479)
Q Consensus 229 ~afv~f~~~~~a~~a~~~~~~~~~~~ 254 (479)
.+.|.|...++...|+..|....+..
T Consensus 152 ~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 152 VGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred ceeeeeeehhhHHHHHHhhccccccC
Confidence 89999999999999999998654443
No 48
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=6.6e-17 Score=154.33 Aligned_cols=244 Identities=20% Similarity=0.397 Sum_probs=185.9
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhccc-----------C-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPI-----------G-EVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKD 169 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~-----------G-~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~ 169 (479)
..+.++|+++|+.++++.+..+|..- | .|..|.|. ..+.+|||+|.+.+.|..|+. +++..
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n------~~~nfa~ie~~s~~~at~~~~-~~~~~ 246 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN------LEKNFAFIEFRSISEATEAMA-LDGII 246 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec------ccccceeEEecCCCchhhhhc-ccchh
Confidence 56779999999999999999888643 2 36666664 346699999999999999995 68888
Q ss_pred CCCCeeeeeccC-----------------------------CCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCC
Q 011718 170 FKGKTIRCSMSE-----------------------------TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDP 220 (479)
Q Consensus 170 ~~g~~l~v~~a~-----------------------------~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~ 220 (479)
+.|+.+++.... ...+++|++||...++.+++++...||+ +....++.+.
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~-lk~f~lv~d~ 325 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGP-LKAFRLVKDS 325 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhccc-chhheeeccc
Confidence 888777664421 1357999999999999999999999999 9999999984
Q ss_pred CCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCceeeecCCCCCCCch-----------------hhhhhccceE
Q 011718 221 QAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHS-----------------AAAASQVKAL 283 (479)
Q Consensus 221 ~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----------------~~~~~~~~~l 283 (479)
.++.+++|+|.+|.+......|+..|+ +..+.++.+.|..+......... ......+..|
T Consensus 326 -~~g~skg~af~ey~dpsvtd~A~agLn--Gm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl 402 (500)
T KOG0120|consen 326 -ATGNSKGFAFCEYCDPSVTDQAIAGLN--GMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVL 402 (500)
T ss_pred -ccccccceeeeeeeCCcchhhhhcccc--hhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhh
Confidence 558999999999999999999999998 44566666666665433211100 0011112344
Q ss_pred EecCCCC--CC-CH-------HHHHHHHhcCCCEEEEEccCC-CCC---C-CceEEEEeCChHHHHHHHHhcCCceecCe
Q 011718 284 YVKNLPE--NT-TT-------KQLKELFQRHGEVTKVVTPPG-KSG---K-RDFGFIHYAERSSALKAIKDTEKYEIDGQ 348 (479)
Q Consensus 284 ~v~nl~~--~~-~~-------~~l~~~f~~~G~v~~v~~~~~-~~~---~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~ 348 (479)
.+.|+=. .. .+ ++|+.-|++||.|..|.|++. ... . .|-.||+|.+.+++++|+..|+|..|+++
T Consensus 403 ~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR 482 (500)
T KOG0120|consen 403 CLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANR 482 (500)
T ss_pred hhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCc
Confidence 4444311 11 11 455666789999999999988 332 2 57899999999999999999999999999
Q ss_pred EEEEEecC
Q 011718 349 VLEVALAR 356 (479)
Q Consensus 349 ~i~v~~a~ 356 (479)
.|..+|-.
T Consensus 483 tVvtsYyd 490 (500)
T KOG0120|consen 483 TVVASYYD 490 (500)
T ss_pred EEEEEecC
Confidence 99988864
No 49
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.70 E-value=2.9e-17 Score=154.49 Aligned_cols=175 Identities=21% Similarity=0.448 Sum_probs=141.4
Q ss_pred CceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCceee
Q 011718 183 NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVS 262 (479)
Q Consensus 183 ~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 262 (479)
.+++|+--|.-.++..+|..+|+.+|. |..|+++.| ...++++|.+||+|.+.+....|+ .|. +..+.+-.|.|.
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gk-VrdVriI~D-r~s~rskgi~Yvef~D~~sVp~ai-aLs--Gqrllg~pv~vq 253 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGK-VRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAI-ALS--GQRLLGVPVIVQ 253 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcC-cceeEeecc-ccchhhcceeEEEEecccchhhHh-hhc--CCcccCceeEec
Confidence 467888888888899999999999999 999999999 677999999999999999988887 455 445666666666
Q ss_pred ecCCCCCCCchh-------hhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCC-CCC-CceEEEEeCChHHH
Q 011718 263 WAEPKSTPDHSA-------AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGK-SGK-RDFGFIHYAERSSA 333 (479)
Q Consensus 263 ~~~~~~~~~~~~-------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~-~~~-~g~~fV~f~~~~~a 333 (479)
............ ....+-..|||+||.+++++++|+.+|+.||.|..|.+..+. .|. +||+||+|.+.++|
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 543221111000 001112349999999999999999999999999999999997 455 99999999999999
Q ss_pred HHHHHhcCCceecCeEEEEEecCCCCCCC
Q 011718 334 LKAIKDTEKYEIDGQVLEVALARPQTNKR 362 (479)
Q Consensus 334 ~~a~~~~~~~~~~g~~i~v~~a~~~~~~~ 362 (479)
.+|+..|||..|.|+.|+|.....+....
T Consensus 334 r~a~e~lngfelAGr~ikV~~v~~r~~~~ 362 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVVTERVDTK 362 (549)
T ss_pred HHHHHHhccceecCceEEEEEeeeecccc
Confidence 99999999999999999998887665433
No 50
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.69 E-value=3.6e-15 Score=133.29 Aligned_cols=248 Identities=20% Similarity=0.199 Sum_probs=199.1
Q ss_pred cCCCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHh--cCCCCCCCe
Q 011718 97 LALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL--CSKDFKGKT 174 (479)
Q Consensus 97 ~~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l--~~~~~~g~~ 174 (479)
...+..+-.|.|++|-..+++.+|.+.++.||+|..|.++.. +..|.|+|.+.+.|+.|+... +...+.|+.
T Consensus 25 phk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~ 98 (494)
T KOG1456|consen 25 PHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQ 98 (494)
T ss_pred CCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCch
Confidence 345667788999999999999999999999999999888654 457999999999999998532 344566766
Q ss_pred eeeeccC-------------CCceee--ccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhH
Q 011718 175 IRCSMSE-------------TNNRLF--IGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNAC 239 (479)
Q Consensus 175 l~v~~a~-------------~~~~l~--v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~ 239 (479)
-.++++. +++.|. |-|--+.+|.+-|..+....|. |..|.|++. +---|.|+|.+.+.
T Consensus 99 Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~Gk-VlRIvIfkk------ngVQAmVEFdsv~~ 171 (494)
T KOG1456|consen 99 ALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGK-VLRIVIFKK------NGVQAMVEFDSVEV 171 (494)
T ss_pred hhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCc-eEEEEEEec------cceeeEEeechhHH
Confidence 5555552 233343 3454567999999999999999 999988863 34569999999999
Q ss_pred HHHHHHHhhcCccccCCCCceeeecCCCCCCC------------------------------------------------
Q 011718 240 ADYSRQKMTSANFKLDGNTPTVSWAEPKSTPD------------------------------------------------ 271 (479)
Q Consensus 240 a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------------------------------------------ 271 (479)
|.+|..+|++..+.....+++|.++++..-..
T Consensus 172 AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~ 251 (494)
T KOG1456|consen 172 AQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSG 251 (494)
T ss_pred HHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCC
Confidence 99999999999999999999999998751000
Q ss_pred ---------------------------chhhhhhccceEEecCCCCCC-CHHHHHHHHhcCCCEEEEEccCCCCCCCceE
Q 011718 272 ---------------------------HSAAAASQVKALYVKNLPENT-TTKQLKELFQRHGEVTKVVTPPGKSGKRDFG 323 (479)
Q Consensus 272 ---------------------------~~~~~~~~~~~l~v~nl~~~~-~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~ 323 (479)
..+....+...+.|.+|.... +-+.|..+|-.||.|.+|.+++.+. |.|
T Consensus 252 y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~---gta 328 (494)
T KOG1456|consen 252 YYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP---GTA 328 (494)
T ss_pred CcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc---cee
Confidence 000011124678999998754 6789999999999999999998775 689
Q ss_pred EEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCCC
Q 011718 324 FIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTN 360 (479)
Q Consensus 324 fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~~ 360 (479)
.|+..+..+.++|+..||+..+-|.+|.|.+++....
T Consensus 329 mVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v 365 (494)
T KOG1456|consen 329 MVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFV 365 (494)
T ss_pred EEEcCcHHHHHHHHHHhccCccccceEEEeecccccc
Confidence 9999999999999999999999999999999876543
No 51
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.68 E-value=7.8e-16 Score=128.00 Aligned_cols=229 Identities=18% Similarity=0.212 Sum_probs=129.4
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEee-cCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCC---CCeee
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVK-DKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFK---GKTIR 176 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~-~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~---g~~l~ 176 (479)
..-+||||.+||.++..-+|..||..|---+.+.|.. ++.....+.+|||+|.+...|..|+..|||..|. +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 3467999999999999999999998885444444432 2222335689999999999999999999999875 78999
Q ss_pred eeccCCCceeeccCCCCCc-CHHHHH---HHHHhh-CCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCc
Q 011718 177 CSMSETNNRLFIGNVPKSW-TEKEFR---KVIEDV-GPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSAN 251 (479)
Q Consensus 177 v~~a~~~~~l~v~nl~~~~-~~~~l~---~~f~~~-g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 251 (479)
|+.++.+.+.--......- ....|. .-+..+ ....+.+....+|.... ..+. ..|++.-. .
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~-~~~~-----------a~al~~~~--~ 177 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQ-EPGN-----------ADALKEND--T 177 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccC-Cccc-----------cccCCCcc--c
Confidence 9999876543322211100 000000 000000 00000000000100000 0000 00000000 0
Q ss_pred cccCCCCceeeecCCCCCC----CchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEe
Q 011718 252 FKLDGNTPTVSWAEPKSTP----DHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHY 327 (479)
Q Consensus 252 ~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f 327 (479)
.....-.....|+.+.... .........+.+|||-||..++|+++|+.+|+.|-....++|..... ...|||.|
T Consensus 178 t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g--~~vaf~~~ 255 (284)
T KOG1457|consen 178 TKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGG--MPVAFADF 255 (284)
T ss_pred cchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCC--cceEeecH
Confidence 0000000001111111000 00001123367999999999999999999999998777666644332 37899999
Q ss_pred CChHHHHHHHHhcCCcee
Q 011718 328 AERSSALKAIKDTEKYEI 345 (479)
Q Consensus 328 ~~~~~a~~a~~~~~~~~~ 345 (479)
++.+.|..|+..|.|..|
T Consensus 256 ~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 256 EEIEQATDAMNHLQGNLL 273 (284)
T ss_pred HHHHHHHHHHHHhhccee
Confidence 999999999999887655
No 52
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.63 E-value=1e-13 Score=124.16 Aligned_cols=237 Identities=21% Similarity=0.276 Sum_probs=183.7
Q ss_pred ECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCC--CCeeeeeccCC---
Q 011718 108 IGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFK--GKTIRCSMSET--- 182 (479)
Q Consensus 108 V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~--g~~l~v~~a~~--- 182 (479)
|-|--+.+|.+-|..++...|+|.+|.|++. +--.|.|+|.+.+.|++|...|||..|. -.+|+|++|++
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkk-----ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKK-----NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEec-----cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 4454567999999999999999999999864 2346999999999999999999998765 35777777652
Q ss_pred --------------------------------------------------------------------------------
Q 011718 183 -------------------------------------------------------------------------------- 182 (479)
Q Consensus 183 -------------------------------------------------------------------------------- 182 (479)
T Consensus 202 nV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p 281 (494)
T KOG1456|consen 202 NVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASP 281 (494)
T ss_pred eeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCC
Confidence
Q ss_pred -----CceeeccCCCC-CcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCC
Q 011718 183 -----NNRLFIGNVPK-SWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDG 256 (479)
Q Consensus 183 -----~~~l~v~nl~~-~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 256 (479)
.+.+.|.+|.. .+.-+.|.++|..||. |+.|..++.. .+.|.|++.+..+.+.|+..|+ +..+.|
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGN-V~rvkFmkTk------~gtamVemgd~~aver~v~hLn--n~~lfG 352 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGN-VERVKFMKTK------PGTAMVEMGDAYAVERAVTHLN--NIPLFG 352 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCc-eeeEEEeecc------cceeEEEcCcHHHHHHHHHHhc--cCcccc
Confidence 12345555653 4777899999999999 9999998752 4789999999999999999999 566678
Q ss_pred CCceeeecCCCCCC------------------------Cchh------hhhhccceEEecCCCCCCCHHHHHHHHhcCC-
Q 011718 257 NTPTVSWAEPKSTP------------------------DHSA------AAASQVKALYVKNLPENTTTKQLKELFQRHG- 305 (479)
Q Consensus 257 ~~~~v~~~~~~~~~------------------------~~~~------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G- 305 (479)
.+|.|..++..... -..+ ....++++|+.-|.|..+|++.|..+|...+
T Consensus 353 ~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v 432 (494)
T KOG1456|consen 353 GKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDV 432 (494)
T ss_pred ceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCC
Confidence 77777766543110 0011 1123367899999999999999999998765
Q ss_pred CEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCe------EEEEEecCCC
Q 011718 306 EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQ------VLEVALARPQ 358 (479)
Q Consensus 306 ~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~------~i~v~~a~~~ 358 (479)
..++|+|+..+.-+.--+.++|++.++|..||..+|...|.+. .|++.|+.++
T Consensus 433 ~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 433 PPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred CcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 4567788777754445789999999999999999998888763 5666666655
No 53
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.62 E-value=1.5e-15 Score=109.86 Aligned_cols=70 Identities=41% Similarity=0.825 Sum_probs=67.0
Q ss_pred EEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeee
Q 011718 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIR 176 (479)
Q Consensus 106 l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~ 176 (479)
|||+|||.++|+++|+++|++||.|..+.+..+ .++..+++|||+|.+.++|++|++.|++..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 5689999999999999999999999999999999885
No 54
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=3.8e-14 Score=114.51 Aligned_cols=153 Identities=19% Similarity=0.326 Sum_probs=127.6
Q ss_pred CCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCcee
Q 011718 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTV 261 (479)
Q Consensus 182 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 261 (479)
..++|||+|||..+-+.+|..+|.+||. |..|.|... .....||||+|.+..+|+.|+..-+ .+.+++..|.|
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~-i~~ieLK~r----~g~ppfafVeFEd~RDAeDAiygRd--GYdydg~rLRV 77 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGR-IREIELKNR----PGPPPFAFVEFEDPRDAEDAIYGRD--GYDYDGCRLRV 77 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcc-eEEEEeccC----CCCCCeeEEEecCccchhhhhhccc--ccccCcceEEE
Confidence 4578999999999999999999999999 999988654 3456899999999999999998877 78889999999
Q ss_pred eecCCCCCCCc-------------------hhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCce
Q 011718 262 SWAEPKSTPDH-------------------SAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDF 322 (479)
Q Consensus 262 ~~~~~~~~~~~-------------------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~ 322 (479)
.++........ .+.......+|.|.+||.+.+|++|+++..+.|.|....+.++. +
T Consensus 78 Efprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg-----~ 152 (241)
T KOG0105|consen 78 EFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG-----V 152 (241)
T ss_pred EeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc-----c
Confidence 99875421110 01112224689999999999999999999999999998887764 7
Q ss_pred EEEEeCChHHHHHHHHhcCCceec
Q 011718 323 GFIHYAERSSALKAIKDTEKYEID 346 (479)
Q Consensus 323 ~fV~f~~~~~a~~a~~~~~~~~~~ 346 (479)
+.|+|...++.+-|+..|+...+.
T Consensus 153 GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 153 GVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeeeeeehhhHHHHHHhhcccccc
Confidence 899999999999999999876554
No 55
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1.2e-15 Score=128.54 Aligned_cols=78 Identities=35% Similarity=0.676 Sum_probs=72.3
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccC
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~ 181 (479)
-++|||++|+|.++.+.|+++|++||+|+++.|+.|+.|+++|||+||+|++.++|.+|++. -+-.|.||+..|+.|.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 45799999999999999999999999999999999999999999999999999999999975 5668999999887764
No 56
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=2.6e-15 Score=113.69 Aligned_cols=84 Identities=23% Similarity=0.365 Sum_probs=77.3
Q ss_pred hhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEe
Q 011718 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVAL 354 (479)
Q Consensus 277 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 354 (479)
...+++|||+||++.+++++|.++|+++|.|..|.+-.++.++ -|||||+|.+.++|..|++.+++..|+.++|.|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 3346899999999999999999999999999999999888876 79999999999999999999999999999999999
Q ss_pred cCCCCC
Q 011718 355 ARPQTN 360 (479)
Q Consensus 355 a~~~~~ 360 (479)
..--..
T Consensus 113 D~GF~e 118 (153)
T KOG0121|consen 113 DAGFVE 118 (153)
T ss_pred cccchh
Confidence 876554
No 57
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=1.6e-15 Score=133.46 Aligned_cols=83 Identities=24% Similarity=0.396 Sum_probs=78.6
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
..++|+|.|||+.+.+-||+..|.+||.|.+|.|+.+..|+|||+||+|++.++|++|..+|||..|.||+|.|..|..+
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCC
Q 011718 359 TNK 361 (479)
Q Consensus 359 ~~~ 361 (479)
...
T Consensus 175 V~n 177 (376)
T KOG0125|consen 175 VHN 177 (376)
T ss_pred hcc
Confidence 543
No 58
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=2.9e-15 Score=126.67 Aligned_cols=82 Identities=37% Similarity=0.600 Sum_probs=79.5
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~ 181 (479)
+.++|.|.||+.++++++|++||.+||.|.+|.|.+++.||.++|||||.|.+.++|.+||..|||.-+..--|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 011718 182 TN 183 (479)
Q Consensus 182 ~~ 183 (479)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 74
No 59
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.59 E-value=5.6e-15 Score=106.82 Aligned_cols=69 Identities=28% Similarity=0.622 Sum_probs=65.0
Q ss_pred EEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEE
Q 011718 283 LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLE 351 (479)
Q Consensus 283 l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~ 351 (479)
|||+|||.++|+++|+++|++||.|..+.+..+..+. +++|||+|.+.++|.+|+..|++..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999875555 89999999999999999999999999999985
No 60
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=2.4e-15 Score=128.27 Aligned_cols=167 Identities=26% Similarity=0.437 Sum_probs=129.8
Q ss_pred CeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCCC
Q 011718 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN 183 (479)
Q Consensus 104 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~~ 183 (479)
..|||++||+.+.+.+|..||..||.|..|.+. .||+||+|.+..+|..|+..|++..|.+..+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 369999999999999999999999999999874 468899999999999999999999999988888777532
Q ss_pred ceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCceeee
Q 011718 184 NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSW 263 (479)
Q Consensus 184 ~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 263 (479)
..- .+.+.+ + .+.- |
T Consensus 74 ~~~------------------------------------~g~~~~-g-------------------------~r~~---~ 88 (216)
T KOG0106|consen 74 RRG------------------------------------RGRPRG-G-------------------------DRRS---D 88 (216)
T ss_pred ccc------------------------------------cCCCCC-C-------------------------Cccc---h
Confidence 110 001100 0 0000 0
Q ss_pred cCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCc
Q 011718 264 AEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKY 343 (479)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~ 343 (479)
.... .........|.|.||+..+.+.+|.++|.++|.+....+. ++++||+|.+.++|.+|+..|++.
T Consensus 89 ~~~~------~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~------~~~~~v~Fs~~~da~ra~~~l~~~ 156 (216)
T KOG0106|consen 89 SRRY------RPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR------RNFAFVEFSEQEDAKRALEKLDGK 156 (216)
T ss_pred hhcc------CCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh------ccccceeehhhhhhhhcchhccch
Confidence 0000 0012225789999999999999999999999999665552 378999999999999999999999
Q ss_pred eecCeEEEEEec
Q 011718 344 EIDGQVLEVALA 355 (479)
Q Consensus 344 ~~~g~~i~v~~a 355 (479)
.+.++.|.+...
T Consensus 157 ~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 157 KLNGRRISVEKN 168 (216)
T ss_pred hhcCceeeeccc
Confidence 999999999443
No 61
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.58 E-value=3.3e-14 Score=134.13 Aligned_cols=80 Identities=23% Similarity=0.393 Sum_probs=74.3
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCC-C-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~-~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|||+|||+++|+++|+++|+.||.|+.|+|+.+..+ + +|||||+|.+.++|.+||..|++..|.+++|+|.++.
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 4689999999999999999999999999999999988653 3 8999999999999999999999999999999999987
Q ss_pred CC
Q 011718 357 PQ 358 (479)
Q Consensus 357 ~~ 358 (479)
+.
T Consensus 186 p~ 187 (346)
T TIGR01659 186 PG 187 (346)
T ss_pred cc
Confidence 64
No 62
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=4.1e-15 Score=112.61 Aligned_cols=81 Identities=21% Similarity=0.379 Sum_probs=77.2
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
..++||||+||++.+||+.|.+||+++|+|..|.+-.++.+..+-|||||+|.+.++|..||+.+++..|..+.|+|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred C
Q 011718 181 E 181 (479)
Q Consensus 181 ~ 181 (479)
-
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 3
No 63
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.56 E-value=1.2e-14 Score=119.54 Aligned_cols=80 Identities=28% Similarity=0.504 Sum_probs=75.7
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
...|.|-||.+.|+.++|+.+|++||.|.+|.|+.+..++ +|||||.|....+|+.|+.+|+|..|+|+.|.|++|+-
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 4689999999999999999999999999999999999877 99999999999999999999999999999999999974
Q ss_pred CC
Q 011718 358 QT 359 (479)
Q Consensus 358 ~~ 359 (479)
..
T Consensus 93 gr 94 (256)
T KOG4207|consen 93 GR 94 (256)
T ss_pred CC
Confidence 43
No 64
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.56 E-value=1.5e-14 Score=104.41 Aligned_cols=70 Identities=49% Similarity=0.826 Sum_probs=64.9
Q ss_pred EEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeee
Q 011718 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIR 176 (479)
Q Consensus 106 l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~ 176 (479)
|||+|||+.+|+++|+++|+.||.|..|++..++. +..+++|||+|.+.++|.+|+..+++..|.|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 89999999999999999999999888999999874
No 65
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=6.4e-16 Score=124.42 Aligned_cols=81 Identities=32% Similarity=0.615 Sum_probs=77.3
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
-..+..|||+|||+++|+.+|...|++||.|++|.+++|+.||+++||||+.|.+..+...|+..|||..|.||.|+|.-
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred c
Q 011718 180 S 180 (479)
Q Consensus 180 a 180 (479)
.
T Consensus 112 v 112 (219)
T KOG0126|consen 112 V 112 (219)
T ss_pred c
Confidence 4
No 66
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=2.8e-14 Score=125.13 Aligned_cols=76 Identities=17% Similarity=0.307 Sum_probs=70.6
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCC
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSET 182 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~ 182 (479)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+.+.. .+|||||+|.+.++|+.||. |++..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998853 57999999999999999995 999999999999999763
No 67
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.52 E-value=7.3e-14 Score=122.56 Aligned_cols=77 Identities=18% Similarity=0.313 Sum_probs=71.3
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
.++|||+||++.+|+++|+++|+.||.|.+|.|+.++. .+|||||+|.+.++|..||. |++..|.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 47899999999999999999999999999999988764 36899999999999999996 9999999999999998754
No 68
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=4.7e-14 Score=119.45 Aligned_cols=80 Identities=30% Similarity=0.540 Sum_probs=76.3
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..++|.|.||+.++++.+|+++|.+||.|.+|.|.+++.+. ||||||+|.+.++|.+||..|||+-++.-.|.|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 35789999999999999999999999999999999999866 9999999999999999999999999999999999999
Q ss_pred CC
Q 011718 357 PQ 358 (479)
Q Consensus 357 ~~ 358 (479)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 69
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.51 E-value=6.1e-14 Score=101.21 Aligned_cols=69 Identities=36% Similarity=0.647 Sum_probs=63.3
Q ss_pred EEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEE
Q 011718 283 LYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLE 351 (479)
Q Consensus 283 l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~ 351 (479)
|||+|||+++++++|+++|+.||.|..|.+...+.+. +++|||+|.+.++|.+|+..+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999987756 89999999999999999999999999999885
No 70
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=3.9e-14 Score=123.29 Aligned_cols=81 Identities=28% Similarity=0.446 Sum_probs=77.4
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
.+=+||||.-|+++++|..|+..|+.||+|..|+||+++.||+++|||||+|.++.+...|.+..+|..|.|+.|.|...
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 36689999999999999999999999999999999999999999999999999999999999999999999999999775
Q ss_pred C
Q 011718 181 E 181 (479)
Q Consensus 181 ~ 181 (479)
.
T Consensus 179 R 179 (335)
T KOG0113|consen 179 R 179 (335)
T ss_pred c
Confidence 4
No 71
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=4.1e-14 Score=113.60 Aligned_cols=77 Identities=29% Similarity=0.456 Sum_probs=71.6
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
.-.++|||+||+..+|+.+|..+|..||+|.+|+|-++ ..|||||+|.+..+|..|+..|+|..|.|..|+|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 34789999999999999999999999999999999875 4699999999999999999999999999999999987
Q ss_pred CC
Q 011718 181 ET 182 (479)
Q Consensus 181 ~~ 182 (479)
..
T Consensus 83 ~G 84 (195)
T KOG0107|consen 83 TG 84 (195)
T ss_pred cC
Confidence 64
No 72
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=2e-13 Score=109.66 Aligned_cols=78 Identities=22% Similarity=0.399 Sum_probs=72.0
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQT 359 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~ 359 (479)
.++|||+||+..+++.+|..+|..||.|..|-|..... |||||+|+++.+|..|+..|+|..|+|..|+|.++.-..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP---GfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP---GFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC---CceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 47899999999999999999999999999988877553 799999999999999999999999999999999998665
Q ss_pred C
Q 011718 360 N 360 (479)
Q Consensus 360 ~ 360 (479)
.
T Consensus 87 r 87 (195)
T KOG0107|consen 87 R 87 (195)
T ss_pred c
Confidence 4
No 73
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=1.1e-13 Score=100.70 Aligned_cols=81 Identities=23% Similarity=0.367 Sum_probs=73.4
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.+..++.|||+|||+++|.+++.++|.+||.|..|+|-..+ ..+|.|||.|.+..+|++|+..|+|..+.++.|.|.
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 44567889999999999999999999999999999997654 468999999999999999999999999999999998
Q ss_pred ccCC
Q 011718 179 MSET 182 (479)
Q Consensus 179 ~a~~ 182 (479)
+-.+
T Consensus 91 yyq~ 94 (124)
T KOG0114|consen 91 YYQP 94 (124)
T ss_pred ecCH
Confidence 7553
No 74
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.49 E-value=1e-12 Score=120.17 Aligned_cols=175 Identities=22% Similarity=0.364 Sum_probs=144.8
Q ss_pred CCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCcee
Q 011718 182 TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTV 261 (479)
Q Consensus 182 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 261 (479)
..+.+||.|+|+++...+|+++|....-.|+.|.++.| ..+++++++.|+|++++.+.+|++.|+ .+.+.+|.|.|
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~ln--k~~~~GR~l~v 118 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKLN--KYEVNGRELVV 118 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHhh--hccccCceEEE
Confidence 34569999999999999999999876555999999997 579999999999999999999999999 77888888887
Q ss_pred eecCCCCCC---------------------------------------------Cch-----h-----------------
Q 011718 262 SWAEPKSTP---------------------------------------------DHS-----A----------------- 274 (479)
Q Consensus 262 ~~~~~~~~~---------------------------------------------~~~-----~----------------- 274 (479)
+-....... ... .
T Consensus 119 KEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfg 198 (608)
T KOG4212|consen 119 KEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFG 198 (608)
T ss_pred eccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhccc
Confidence 654431000 000 0
Q ss_pred -----------hhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCC
Q 011718 275 -----------AAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEK 342 (479)
Q Consensus 275 -----------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~ 342 (479)
.......++||.||.+.+....|++.|.-.|.|..|.+..++.+. +|||.++|..+-.|..||..+++
T Consensus 199 l~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 199 LSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred chhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhcc
Confidence 000113579999999999999999999999999999999999888 99999999999999999999998
Q ss_pred ceecCeEEEEEecCCCCC
Q 011718 343 YEIDGQVLEVALARPQTN 360 (479)
Q Consensus 343 ~~~~g~~i~v~~a~~~~~ 360 (479)
.-+..++..+.+..-..+
T Consensus 279 ~g~~~~~~~~Rl~~~~Dr 296 (608)
T KOG4212|consen 279 QGLFDRRMTVRLDRIPDR 296 (608)
T ss_pred CCCccccceeeccccccc
Confidence 778889999988665443
No 75
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=1.1e-13 Score=116.80 Aligned_cols=77 Identities=26% Similarity=0.469 Sum_probs=70.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
-++|||++|+|.++.+.|+++|++||.|+.+.|+.++.+. |||+||+|.+.++|.+|++.. +-.|+||+..|.+|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhhh
Confidence 3689999999999999999999999999999999998744 999999999999999999864 4589999999999875
No 76
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.48 E-value=3.5e-13 Score=126.89 Aligned_cols=167 Identities=34% Similarity=0.606 Sum_probs=120.6
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCC
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSET 182 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~ 182 (479)
.++|||+|||+.+|+++|.++|.+||.|..|.+..++.++.++|+|||.|.+.++|..|+..+++..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 68999999999999999999999999999999999988899999999999999999999999999999999999998653
Q ss_pred --CceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCce
Q 011718 183 --NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260 (479)
Q Consensus 183 --~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 260 (479)
..... .... .. ..... ..
T Consensus 195 ~~~~~~~------------------------------------~~~~--~~-------------~~~~~-~~-------- 214 (306)
T COG0724 195 ASQPRSE------------------------------------LSNN--LD-------------ASFAK-KL-------- 214 (306)
T ss_pred ccccccc------------------------------------cccc--cc-------------hhhhc-cc--------
Confidence 00000 0000 00 00000 00
Q ss_pred eeecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHHHH
Q 011718 261 VSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIK 338 (479)
Q Consensus 261 v~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~ 338 (479)
.............+++.+++..++...+..+|..+|.+..+.+....... ..+.++.+.....+...+.
T Consensus 215 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 215 ---------SRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred ---------cccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 00000012224689999999999999999999999999887777666543 2333344444444444333
No 77
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=2.5e-13 Score=98.90 Aligned_cols=78 Identities=27% Similarity=0.474 Sum_probs=72.7
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
++.|||+|||+.+|.+++.++|.+||.|..|+|-..+.+ +|.|||.|++..+|.+|+..|+|..+.++.|.|-+-++.
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T-rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET-RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc-CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 578999999999999999999999999999999887755 589999999999999999999999999999999987764
No 78
>PLN03213 repressor of silencing 3; Provisional
Probab=99.47 E-value=1.2e-13 Score=127.92 Aligned_cols=78 Identities=23% Similarity=0.492 Sum_probs=71.9
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCH--HHHHHHHHHhcCCCCCCCeeeeec
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSK--EVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~--e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
...+|||+||++.+|+++|+.+|..||.|.+|.|+ +.|| ||||||+|.+. .++.+||..|||..|.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 34689999999999999999999999999999999 4566 99999999987 789999999999999999999999
Q ss_pred cCCC
Q 011718 180 SETN 183 (479)
Q Consensus 180 a~~~ 183 (479)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9853
No 79
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.47 E-value=6.7e-14 Score=115.25 Aligned_cols=83 Identities=29% Similarity=0.435 Sum_probs=78.3
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
+...-.+|.|-||-+.+|.++|+.+|++||.|.+|.|.+++.|+.++|||||.|....+|+.|+++|+|.+|.|+.|+|.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 33455789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccC
Q 011718 179 MSE 181 (479)
Q Consensus 179 ~a~ 181 (479)
+|.
T Consensus 89 ~ar 91 (256)
T KOG4207|consen 89 MAR 91 (256)
T ss_pred hhh
Confidence 875
No 80
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.46 E-value=2.8e-13 Score=116.80 Aligned_cols=77 Identities=21% Similarity=0.322 Sum_probs=70.8
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
+.+.+|||+||++.+|+++|++||+.||.|.+|.|+++ +..+++|||+|.++++|..|+ .|+|..|.++.|.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 35679999999999999999999999999999999988 455689999999999999999 68999999999999886
Q ss_pred C
Q 011718 181 E 181 (479)
Q Consensus 181 ~ 181 (479)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 5
No 81
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=1.1e-13 Score=105.74 Aligned_cols=83 Identities=28% Similarity=0.472 Sum_probs=78.6
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
....+-.|||.++...+|+++|.+.|..||+|.+|.+-.++.||..+|||+|+|.+.+.|++|+..||+..|.|..|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 34467789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 011718 179 MSE 181 (479)
Q Consensus 179 ~a~ 181 (479)
||-
T Consensus 148 w~F 150 (170)
T KOG0130|consen 148 WCF 150 (170)
T ss_pred EEE
Confidence 973
No 82
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=1.6e-13 Score=121.08 Aligned_cols=79 Identities=27% Similarity=0.466 Sum_probs=73.7
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCC
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSET 182 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~ 182 (479)
-++|+|.|||+...+.||+.+|.+||.|.+|.|+-+.. -+|||+||+|.+.++|++|..+|||..+.||+|.|+.+..
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER--GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER--GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC--CCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 45799999999999999999999999999999999864 5899999999999999999999999999999999998865
Q ss_pred C
Q 011718 183 N 183 (479)
Q Consensus 183 ~ 183 (479)
+
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 3
No 83
>PLN03213 repressor of silencing 3; Provisional
Probab=99.43 E-value=4.7e-13 Score=124.12 Aligned_cols=77 Identities=23% Similarity=0.281 Sum_probs=71.2
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCCh--HHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAER--SSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~--~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
..+|||+||++.+++++|+.+|+.||.|.+|.|++... ||||||+|.+. .++.+||..|||..+.|+.|+|..|++
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 46899999999999999999999999999999995443 89999999987 789999999999999999999999987
Q ss_pred C
Q 011718 358 Q 358 (479)
Q Consensus 358 ~ 358 (479)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 4
No 84
>smart00362 RRM_2 RNA recognition motif.
Probab=99.41 E-value=1.1e-12 Score=94.99 Aligned_cols=72 Identities=43% Similarity=0.767 Sum_probs=67.1
Q ss_pred eEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 105 ~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
+|+|+|||..++.++|+++|.+||.|..+.+..+. +.++++|||+|.+.++|++|+..+++..+.|+.|+|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 6788999999999999999999999999999998763
No 85
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.40 E-value=1.9e-11 Score=119.80 Aligned_cols=79 Identities=25% Similarity=0.493 Sum_probs=73.9
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQT 359 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~ 359 (479)
++||||+.|+..+++.+|.++|+.||.|.+|.++..+ ++|||......+|.+|+.+|+++.+.++.|+|.||..+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R----~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR----GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC----ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 5799999999999999999999999999999998776 899999999999999999999999999999999998776
Q ss_pred CCC
Q 011718 360 NKR 362 (479)
Q Consensus 360 ~~~ 362 (479)
.+.
T Consensus 497 ~ks 499 (894)
T KOG0132|consen 497 PKS 499 (894)
T ss_pred cch
Confidence 443
No 86
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.40 E-value=1.7e-12 Score=112.00 Aligned_cols=77 Identities=14% Similarity=0.104 Sum_probs=70.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
..+|||+||++.+|+++|++||+.||.|.+|+|+++... ++||||+|.+.++|..|+. |+|..|.++.|.|..+...
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et-~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEY-ACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQY 81 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCc-ceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCccc
Confidence 579999999999999999999999999999999988532 5899999999999999996 9999999999999887643
No 87
>smart00362 RRM_2 RNA recognition motif.
Probab=99.39 E-value=2.7e-12 Score=93.00 Aligned_cols=72 Identities=32% Similarity=0.589 Sum_probs=66.1
Q ss_pred eEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEE
Q 011718 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVA 353 (479)
Q Consensus 282 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 353 (479)
+|+|.|||..++.++|+++|.+||.|..+.+.......+++|||+|.+.++|.+|+..+++..|.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999999999999999988772228999999999999999999999999999999873
No 88
>smart00360 RRM RNA recognition motif.
Probab=99.39 E-value=1.8e-12 Score=93.63 Aligned_cols=71 Identities=45% Similarity=0.834 Sum_probs=66.9
Q ss_pred ECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 108 IGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 108 V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
|+|||..+++++|+++|++||.|..|.+..++.++.++++|||+|.+.++|.+|+..+++..+.|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988788999999999999999999999999999999998873
No 89
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=6.6e-12 Score=109.60 Aligned_cols=82 Identities=28% Similarity=0.472 Sum_probs=76.0
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCC-C-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-K-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~-~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
-+||||.-|++.+++..|+..|+.||.|+.|+|+.+..+ + +|||||+|++..+...|.+..+|..|+|+.|.|.+-..
T Consensus 101 y~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERg 180 (335)
T KOG0113|consen 101 YKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERG 180 (335)
T ss_pred cceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEeccc
Confidence 479999999999999999999999999999999999764 4 99999999999999999999999999999999999876
Q ss_pred CCCC
Q 011718 358 QTNK 361 (479)
Q Consensus 358 ~~~~ 361 (479)
...+
T Consensus 181 RTvk 184 (335)
T KOG0113|consen 181 RTVK 184 (335)
T ss_pred cccc
Confidence 6543
No 90
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.5e-13 Score=135.85 Aligned_cols=231 Identities=16% Similarity=0.199 Sum_probs=191.1
Q ss_pred CCCeEEECCCCCCCCHH-HHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 102 HGSEVFIGGLPKDASEE-DLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~-~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
..+.+.+.|+-+..... .++..|..+|.|..|++......-....+.++.+....+++.|.. ..+..+.++.+.|..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCC
Confidence 44567778887776555 567889999999999987733323333489999999999999985 4788899998888877
Q ss_pred CCC----------------ceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHH
Q 011718 181 ETN----------------NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSR 244 (479)
Q Consensus 181 ~~~----------------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 244 (479)
.+. .++|+.||+..+.+.+|...|..++. +..+++... ...++.+|+||+.|.....+.+|+
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~-~e~vqi~~h-~n~~~~rG~~Y~~F~~~~~~~aaV 726 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGT-IEVVQIVIH-KNEKRFRGKAYVEFLKPEHAGAAV 726 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccch-hhhHHHHHH-hhccccccceeeEeecCCchhhhh
Confidence 642 46899999999999999999999987 777666522 456889999999999999999888
Q ss_pred HHhhcCccccCCCCceeeecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceE
Q 011718 245 QKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFG 323 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~ 323 (479)
......-+. ...|+|.|+|+..|.+.|+.+|.++|.+.+++++..+.++ +|.|
T Consensus 727 ~f~d~~~~g--------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a 780 (881)
T KOG0128|consen 727 AFRDSCFFG--------------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKA 780 (881)
T ss_pred hhhhhhhhh--------------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccce
Confidence 766532111 3579999999999999999999999999999999999988 9999
Q ss_pred EEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCCCC
Q 011718 324 FIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTNK 361 (479)
Q Consensus 324 fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~~~ 361 (479)
||.|.+..+|.+++...+...++-+.+.|....+...+
T Consensus 781 ~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~K 818 (881)
T KOG0128|consen 781 RVDYNTEADASRKVASVDVAGKRENNGEVQVSNPERDK 818 (881)
T ss_pred eccCCCcchhhhhcccchhhhhhhcCccccccCCcccc
Confidence 99999999999999999988898899999998875443
No 91
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=6.9e-13 Score=110.26 Aligned_cols=84 Identities=27% Similarity=0.561 Sum_probs=80.1
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
...++|||++|..++|+.-|...|-+||.|..|.+..+-.+.+.|||+||+|...++|..||..||...|.||.|+|+++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCc
Q 011718 181 ETNN 184 (479)
Q Consensus 181 ~~~~ 184 (479)
++.+
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 8753
No 92
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=7.3e-13 Score=110.11 Aligned_cols=84 Identities=31% Similarity=0.558 Sum_probs=77.7
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
+.++|||++|...+++.-|...|-.||.|+.|.++.+.... ||||||+|.-.++|.+||..||...|.||.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 35799999999999999999999999999999999987644 9999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 011718 357 PQTNKR 362 (479)
Q Consensus 357 ~~~~~~ 362 (479)
|...+.
T Consensus 89 P~kike 94 (298)
T KOG0111|consen 89 PEKIKE 94 (298)
T ss_pred CccccC
Confidence 876543
No 93
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=2.1e-12 Score=98.93 Aligned_cols=83 Identities=17% Similarity=0.269 Sum_probs=76.9
Q ss_pred hccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 278 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
.....|||.++...+|+++|.+.|..||.|+.|.|-.++.+. ||||+|+|++.++|++|+..+|+..|-|..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 346899999999999999999999999999999999988766 999999999999999999999999999999999999
Q ss_pred CCCCC
Q 011718 356 RPQTN 360 (479)
Q Consensus 356 ~~~~~ 360 (479)
-.+..
T Consensus 150 Fv~gp 154 (170)
T KOG0130|consen 150 FVKGP 154 (170)
T ss_pred EecCC
Confidence 76543
No 94
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.35 E-value=3.1e-12 Score=115.11 Aligned_cols=143 Identities=24% Similarity=0.304 Sum_probs=115.4
Q ss_pred CCeEEECCCCCCCCHHHHHHhhccc----CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPI----GEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~----G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
.-.|.+++||+++|+.++.+||.+- |-++.|.+++..+ |+..|-|||.|..+++|+.||.+ |...|.-|.|.+-
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 4468899999999999999999632 2456777777665 99999999999999999999965 5555555555443
Q ss_pred cc-------------------------------------CCCceeeccCCCCCcCHHHHHHHHHhhCCceeE--EEeeeC
Q 011718 179 MS-------------------------------------ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDT--IELIKD 219 (479)
Q Consensus 179 ~a-------------------------------------~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~--~~~~~~ 219 (479)
.+ +.+.+|.+++||+..+.++|..+|..|...|.. +.+..+
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN 318 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc
Confidence 32 246789999999999999999999999876655 666654
Q ss_pred CCCCCCCcceEEEEeCChhHHHHHHHHhhc
Q 011718 220 PQAPSRNRGFAFVLYYNNACADYSRQKMTS 249 (479)
Q Consensus 220 ~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 249 (479)
..|+..|-|||+|.+.+.|..|....+.
T Consensus 319 --~qGrPSGeAFIqm~nae~a~aaaqk~hk 346 (508)
T KOG1365|consen 319 --GQGRPSGEAFIQMRNAERARAAAQKCHK 346 (508)
T ss_pred --CCCCcChhhhhhhhhhHHHHHHHHHHHH
Confidence 5699999999999999999988887763
No 95
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.34 E-value=4.7e-11 Score=117.10 Aligned_cols=76 Identities=28% Similarity=0.543 Sum_probs=71.1
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
..++||||+.|+..+++.+|+.+|+.||.|.+|.++. +++||||.+....+|.+||.+|++..+.++.|+|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 3789999999999999999999999999999999965 4789999999999999999999999999999999998
Q ss_pred CC
Q 011718 181 ET 182 (479)
Q Consensus 181 ~~ 182 (479)
..
T Consensus 493 ~g 494 (894)
T KOG0132|consen 493 VG 494 (894)
T ss_pred cc
Confidence 53
No 96
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.33 E-value=9.8e-12 Score=90.54 Aligned_cols=74 Identities=45% Similarity=0.816 Sum_probs=68.6
Q ss_pred eEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 105 ~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
+|+|+|||..+++++|+++|..||.|..+.+..+..+ ..+++|||+|.+.++|..|+..+++..+.+++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988663 7789999999999999999999999999999998863
No 97
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.33 E-value=3.2e-12 Score=122.08 Aligned_cols=79 Identities=37% Similarity=0.719 Sum_probs=77.4
Q ss_pred CeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCC
Q 011718 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSET 182 (479)
Q Consensus 104 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~ 182 (479)
+.|||+|||+++++++|..+|+..|.|.+++++.|+.||+.+||||++|.+.+.|.+|++.||+..+.|++|+|.++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999864
No 98
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.32 E-value=1.4e-11 Score=89.73 Aligned_cols=73 Identities=33% Similarity=0.596 Sum_probs=68.1
Q ss_pred eEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEe
Q 011718 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVAL 354 (479)
Q Consensus 282 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 354 (479)
+|+|+|||..+++++|+++|+.||.|..+.+.....+. +++|||+|.+.++|..|+..+++..++|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999877655 79999999999999999999999999999999874
No 99
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.32 E-value=1.1e-11 Score=84.68 Aligned_cols=56 Identities=36% Similarity=0.560 Sum_probs=51.6
Q ss_pred HHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 297 LKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 297 l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
|+++|++||.|.+|.+.... +++|||+|.+.++|.+|+..||+..++|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999998876 479999999999999999999999999999999986
No 100
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=5.9e-13 Score=107.51 Aligned_cols=78 Identities=21% Similarity=0.386 Sum_probs=72.9
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
+.-|||+|||+.+|+.+|..+|++||.|+.|.|++++.+. +||||+.|++..+...|+..|||..|.||.|+|.....
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 4679999999999999999999999999999999999855 99999999999999999999999999999999976644
No 101
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.28 E-value=5.1e-12 Score=102.40 Aligned_cols=77 Identities=29% Similarity=0.418 Sum_probs=73.9
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
..+|||+||+..++++.|+++|-+.|.|+.++|++++-+. +|||||+|.+.++|.-|++-||...|.|++|+|..+.
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 5799999999999999999999999999999999999766 8999999999999999999999999999999999998
No 102
>smart00360 RRM RNA recognition motif.
Probab=99.28 E-value=1.8e-11 Score=88.31 Aligned_cols=69 Identities=35% Similarity=0.623 Sum_probs=63.3
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEE
Q 011718 285 VKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVA 353 (479)
Q Consensus 285 v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 353 (479)
|+|||..+++++|+.+|++||.|..+.+..... +. +++|||+|.+.++|..|+..+++..++|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 679999999999999999999999999988765 33 8999999999999999999999999999999873
No 103
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.28 E-value=2.6e-11 Score=117.14 Aligned_cols=166 Identities=13% Similarity=0.054 Sum_probs=118.4
Q ss_pred ceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCceeee
Q 011718 184 NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSW 263 (479)
Q Consensus 184 ~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 263 (479)
+.+.+.+++++.+..+++++|...- +..+.|..+ .......|-++|.|...+.+.+|++.-. ...-.|.+.+..
T Consensus 312 ~y~~~~gm~fn~~~nd~rkfF~g~~--~~~~~l~~~-~v~~~~tG~~~v~f~~~~~~q~A~~rn~---~~~~~R~~q~~P 385 (944)
T KOG4307|consen 312 YYNNYKGMEFNNDFNDGRKFFPGRN--AQSTDLSEN-RVAPPQTGRKTVMFTPQAPFQNAFTRNP---SDDVNRPFQTGP 385 (944)
T ss_pred heeeecccccccccchhhhhcCccc--ccccchhhh-hcCCCcCCceEEEecCcchHHHHHhcCc---hhhhhcceeecC
Confidence 3455678888999999999988654 566666655 2334447899999999999999976543 112223222222
Q ss_pred cCCCC-----------------------------C---CCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEE-E
Q 011718 264 AEPKS-----------------------------T---PDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTK-V 310 (479)
Q Consensus 264 ~~~~~-----------------------------~---~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-v 310 (479)
+.... . ..........+.+|||..||..++..++.++|...-.|++ |
T Consensus 386 ~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I 465 (944)
T KOG4307|consen 386 PGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFI 465 (944)
T ss_pred CCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhhee
Confidence 21110 0 0000111222578999999999999999999998777776 8
Q ss_pred EccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 311 VTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 311 ~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
.|.+...++ ++.|||.|..++++.+|+..-+.+.++.+.|+|.-.
T Consensus 466 ~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 466 ELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred EeccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 888888777 899999999999999998877888888899999654
No 104
>smart00361 RRM_1 RNA recognition motif.
Probab=99.23 E-value=3e-11 Score=86.57 Aligned_cols=61 Identities=28% Similarity=0.483 Sum_probs=55.5
Q ss_pred HHHHHHhhc----ccCceeEEE-EeecCCC--CCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeee
Q 011718 117 EEDLRDLCE----PIGEVFEVG-LVKDKDS--GESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177 (479)
Q Consensus 117 e~~l~~~f~----~~G~i~~v~-i~~~~~~--g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v 177 (479)
+++|+++|+ +||.|.+|. |+.++.+ +.++|+|||+|.+.++|.+|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999996 7777766 899999999999999999999999999999999976
No 105
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.23 E-value=4.8e-10 Score=108.59 Aligned_cols=158 Identities=14% Similarity=0.065 Sum_probs=120.2
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
.+.+.|-+.++++.....++++||... .|..+.|..+...+...|-++|.|....++.+|++. |...+..|.+.|..+
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPP 386 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCC
Confidence 467788899999999999999999765 455666666655455589999999999999999975 777777888877664
Q ss_pred C---------------------------------------------CCceeeccCCCCCcCHHHHHHHHHhhCCceeEEE
Q 011718 181 E---------------------------------------------TNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIE 215 (479)
Q Consensus 181 ~---------------------------------------------~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~ 215 (479)
. ....|||..||..++...+.+.|.....++..|.
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeE
Confidence 3 1247999999999999999999999887344465
Q ss_pred eeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCceeeec
Q 011718 216 LIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWA 264 (479)
Q Consensus 216 ~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~ 264 (479)
|.. ..+++.++.|||.|...+++..|...-. .+.+..+.|+|.-.
T Consensus 467 lt~--~P~~~~~~~afv~F~~~~a~~~a~~~~~--k~y~G~r~irv~si 511 (944)
T KOG4307|consen 467 LTR--LPTDLLRPAAFVAFIHPTAPLTASSVKT--KFYPGHRIIRVDSI 511 (944)
T ss_pred ecc--CCcccccchhhheeccccccchhhhccc--ccccCceEEEeech
Confidence 555 4568888999999999777666654433 44455555555433
No 106
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.21 E-value=1.1e-10 Score=110.84 Aligned_cols=80 Identities=30% Similarity=0.529 Sum_probs=68.8
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCC-CCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGK-SGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~-~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
.+|||.|||.+++..+|+++|.+||.|+...|.... .++ .+||||+|.+.++++.||.+ +...|++++|.|...++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 459999999999999999999999999987776544 222 48999999999999999996 688999999999998876
Q ss_pred CCC
Q 011718 359 TNK 361 (479)
Q Consensus 359 ~~~ 361 (479)
...
T Consensus 368 ~~g 370 (419)
T KOG0116|consen 368 FRG 370 (419)
T ss_pred ccc
Confidence 554
No 107
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.21 E-value=3.2e-11 Score=82.37 Aligned_cols=56 Identities=39% Similarity=0.690 Sum_probs=50.6
Q ss_pred HHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 120 LRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 120 l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
|+++|++||.|.+|.+.+.. +++|||+|.+.++|.+|+..||+..|.|++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997653 589999999999999999999999999999999875
No 108
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.20 E-value=2.3e-11 Score=105.79 Aligned_cols=73 Identities=26% Similarity=0.592 Sum_probs=69.5
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCC
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQT 359 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~ 359 (479)
.+|||+|||..+++.+|+.+|++||+|..|.|++ .||||+.++...|..||+.||+.+|+|..|.|..++.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec------ccceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 4799999999999999999999999999999987 689999999999999999999999999999999998873
No 109
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.19 E-value=9e-11 Score=111.53 Aligned_cols=73 Identities=25% Similarity=0.423 Sum_probs=65.8
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeee
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v 177 (479)
.-..++|+|-|||..+++++|+.+|+.||+|..|+..+ ..++.+||+|.+..+|++|++.|++..+.|++|..
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 34678999999999999999999999999999976644 45789999999999999999999999999998883
No 110
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=3.4e-10 Score=106.77 Aligned_cols=171 Identities=20% Similarity=0.305 Sum_probs=113.5
Q ss_pred CCCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCC--CCcee---EEEEEecCHHHHHHHHHHhcCCCCCC
Q 011718 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDS--GESKG---FAFVAFRSKEVAKRAIDELCSKDFKG 172 (479)
Q Consensus 98 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~--g~~~g---~afV~F~~~e~a~~Al~~l~~~~~~g 172 (479)
..+.-++.|||++||++++++.|...|..||.+.-=+-.+.... -..+| |+|+.|.++.++..-|.+..- ....
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~ 332 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGN 332 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccc
Confidence 34556889999999999999999999999998753332221111 12456 999999999999988876322 1122
Q ss_pred CeeeeeccCCCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCcc
Q 011718 173 KTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANF 252 (479)
Q Consensus 173 ~~l~v~~a~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~ 252 (479)
-.|.|....-+.+ .|. |.-..+ .| --||.+
T Consensus 333 ~yf~vss~~~k~k-~VQ---------------------IrPW~l-aD---------s~fv~d------------------ 362 (520)
T KOG0129|consen 333 YYFKVSSPTIKDK-EVQ---------------------IRPWVL-AD---------SDFVLD------------------ 362 (520)
T ss_pred eEEEEecCccccc-cee---------------------EEeeEe-cc---------chhhhc------------------
Confidence 2222222211110 000 000000 00 001100
Q ss_pred ccCCCCceeeecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHh-cCCCEEEEEccCCCCCC--CceEEEEeCC
Q 011718 253 KLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQ-RHGEVTKVVTPPGKSGK--RDFGFIHYAE 329 (479)
Q Consensus 253 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~v~~v~~~~~~~~~--~g~~fV~f~~ 329 (479)
......+.+||||++||--++.++|..+|. -||.|..+-|..|..-+ +|-|-|+|.+
T Consensus 363 --------------------~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsn 422 (520)
T KOG0129|consen 363 --------------------HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSN 422 (520)
T ss_pred --------------------cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecc
Confidence 001122358999999999999999999999 69999999999996544 8999999999
Q ss_pred hHHHHHHHHh
Q 011718 330 RSSALKAIKD 339 (479)
Q Consensus 330 ~~~a~~a~~~ 339 (479)
..+-.+||.+
T Consensus 423 qqsYi~AIsa 432 (520)
T KOG0129|consen 423 QQAYIKAISA 432 (520)
T ss_pred cHHHHHHHhh
Confidence 9999999985
No 111
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.16 E-value=1.5e-10 Score=105.82 Aligned_cols=179 Identities=22% Similarity=0.313 Sum_probs=136.5
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
...+++|++++.+.+.+.++..++..+|.+..+.+.....+..++++++|.|...+.+..||.......+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 35789999999999999999999999998888888887777899999999999999999999753323444444432221
Q ss_pred CCCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCce
Q 011718 181 ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260 (479)
Q Consensus 181 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 260 (479)
.... ..+.+ ....
T Consensus 166 ~~~~------------------------------~~~~n-------------------------------------~~~~ 178 (285)
T KOG4210|consen 166 TRRG------------------------------LRPKN-------------------------------------KLSR 178 (285)
T ss_pred cccc------------------------------ccccc-------------------------------------hhcc
Confidence 1000 00000 0000
Q ss_pred eeecCCCCCCCchhhhhhccceE-EecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHHH
Q 011718 261 VSWAEPKSTPDHSAAAASQVKAL-YVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAI 337 (479)
Q Consensus 261 v~~~~~~~~~~~~~~~~~~~~~l-~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~ 337 (479)
. ......++ +|.+|++.++.++|+.+|..+|.|..++++....+. +|||||.|.+...+..++
T Consensus 179 ~--------------~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 179 L--------------SSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred c--------------ccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 0 00112344 499999999999999999999999999999988765 899999999999999999
Q ss_pred HhcCCceecCeEEEEEecCCCCCC
Q 011718 338 KDTEKYEIDGQVLEVALARPQTNK 361 (479)
Q Consensus 338 ~~~~~~~~~g~~i~v~~a~~~~~~ 361 (479)
.. ....+.++++.|....+....
T Consensus 245 ~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 245 ND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred hc-ccCcccCcccccccCCCCccc
Confidence 87 788999999999998877543
No 112
>smart00361 RRM_1 RNA recognition motif.
Probab=99.16 E-value=1.3e-10 Score=83.20 Aligned_cols=60 Identities=22% Similarity=0.317 Sum_probs=50.9
Q ss_pred HHHHHHHHh----cCCCEEEEE-ccCCCC---CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEE
Q 011718 294 TKQLKELFQ----RHGEVTKVV-TPPGKS---GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVA 353 (479)
Q Consensus 294 ~~~l~~~f~----~~G~v~~v~-~~~~~~---~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 353 (479)
+++|+++|+ +||.|.+|. |..++. +. +|||||+|.+.++|.+|+..|||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 567888888 999999985 444332 33 8999999999999999999999999999999873
No 113
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.15 E-value=1.8e-10 Score=110.29 Aligned_cols=82 Identities=24% Similarity=0.438 Sum_probs=76.8
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
+.|||+|||++++++.|..+|+..|.|..++++.|+.+. |||||++|.+.++|.+|++.||+..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 789999999999999999999999999999999999754 999999999999999999999999999999999999876
Q ss_pred CCCC
Q 011718 359 TNKR 362 (479)
Q Consensus 359 ~~~~ 362 (479)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 6543
No 114
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=4.4e-11 Score=106.71 Aligned_cols=88 Identities=20% Similarity=0.423 Sum_probs=81.9
Q ss_pred CCCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeee
Q 011718 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177 (479)
Q Consensus 98 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v 177 (479)
...++...|||-.|.+-+|.++|.-+|+.||+|.+|.|+++..||.+.-||||+|.+.+++.+|.-+|++.+|..+.|+|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCce
Q 011718 178 SMSETNNR 185 (479)
Q Consensus 178 ~~a~~~~~ 185 (479)
.++.+-.+
T Consensus 314 DFSQSVsk 321 (479)
T KOG0415|consen 314 DFSQSVSK 321 (479)
T ss_pred ehhhhhhh
Confidence 99875443
No 115
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.13 E-value=2.2e-10 Score=107.71 Aligned_cols=78 Identities=37% Similarity=0.650 Sum_probs=73.2
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCC-CCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGK-SGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~-~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
..+|||+|||+.+|+++|+++|.+||.|..|.+..++ .+. +|||||+|.+.++|..|+..+++..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 4899999999999999999999999999999999986 344 99999999999999999999999999999999999764
No 116
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=7.1e-11 Score=101.38 Aligned_cols=87 Identities=23% Similarity=0.436 Sum_probs=81.6
Q ss_pred cCCCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeee
Q 011718 97 LALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIR 176 (479)
Q Consensus 97 ~~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~ 176 (479)
...-+++|.|||..||.+..+.+|...|-.||.|++.++..|+.|..+|.|+||.|.++.+|+.||..|||..|.=++|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCC
Q 011718 177 CSMSETN 183 (479)
Q Consensus 177 v~~a~~~ 183 (479)
|...+++
T Consensus 359 VQLKRPk 365 (371)
T KOG0146|consen 359 VQLKRPK 365 (371)
T ss_pred hhhcCcc
Confidence 9876654
No 117
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=2.2e-11 Score=101.56 Aligned_cols=137 Identities=24% Similarity=0.390 Sum_probs=113.9
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
++..+||||.||-..++++-|.++|-+.|+|..|.|..++. +..+ ||||.|.++-++..|+..+||..|.++.|.|.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 44567999999999999999999999999999999988876 5555 999999999999999999999999999998755
Q ss_pred cCCCceeeccC----CCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhh
Q 011718 180 SETNNRLFIGN----VPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMT 248 (479)
Q Consensus 180 a~~~~~l~v~n----l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~ 248 (479)
+.++ |...++.+.+..+|+..++ +..+++..+ ..++++.++|+.+-...+.-.++....
T Consensus 84 -------r~G~shapld~r~~~ei~~~v~s~a~p-~~~~R~~~~--~d~rnrn~~~~~~qr~~~~P~~~~~y~ 146 (267)
T KOG4454|consen 84 -------RCGNSHAPLDERVTEEILYEVFSQAGP-IEGVRIPTD--NDGRNRNFGFVTYQRLCAVPFALDLYQ 146 (267)
T ss_pred -------ccCCCcchhhhhcchhhheeeecccCC-CCCcccccc--ccCCccCccchhhhhhhcCcHHhhhhc
Confidence 3344 6667888888899999998 888888776 348899999988765555555554443
No 118
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.07 E-value=3.9e-10 Score=95.53 Aligned_cols=81 Identities=21% Similarity=0.420 Sum_probs=72.4
Q ss_pred cceEEecCCCCCCCHHHHHH----HHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 280 VKALYVKNLPENTTTKQLKE----LFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~----~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
+.+|||.||+..+..++|+. +|++||.|.+|...+... .||-|||.|.+.+.|..|+.+|+|..+.|++++|.||
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~K-mRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPK-MRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCC-ccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 45999999999999999888 999999999998876442 1799999999999999999999999999999999999
Q ss_pred CCCCCC
Q 011718 356 RPQTNK 361 (479)
Q Consensus 356 ~~~~~~ 361 (479)
..+..-
T Consensus 88 ~s~sdi 93 (221)
T KOG4206|consen 88 KSDSDI 93 (221)
T ss_pred cCccch
Confidence 887653
No 119
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.07 E-value=3.3e-10 Score=107.23 Aligned_cols=84 Identities=20% Similarity=0.438 Sum_probs=78.4
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
....++.|||.+|...+...+|+.||++||.|+-.+|+.+..+.-.+.|+||++.+.++|.+||..|+.+.|+|+-|.|.
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 34578899999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred ccCC
Q 011718 179 MSET 182 (479)
Q Consensus 179 ~a~~ 182 (479)
.++.
T Consensus 481 kaKN 484 (940)
T KOG4661|consen 481 KAKN 484 (940)
T ss_pred eccc
Confidence 8763
No 120
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=1.5e-10 Score=115.63 Aligned_cols=166 Identities=21% Similarity=0.301 Sum_probs=135.3
Q ss_pred CCCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeee
Q 011718 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177 (479)
Q Consensus 98 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v 177 (479)
.+...+++||++||+..+++.+|+..|..+|.|.+|.|-.... +.-.-|+||.|.+...+-+|+..+.+..|..-.+++
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 4456889999999999999999999999999999999876644 556679999999999998888777665543332222
Q ss_pred eccCCCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCC
Q 011718 178 SMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGN 257 (479)
Q Consensus 178 ~~a~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~ 257 (479)
.+...
T Consensus 446 glG~~--------------------------------------------------------------------------- 450 (975)
T KOG0112|consen 446 GLGQP--------------------------------------------------------------------------- 450 (975)
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 11100
Q ss_pred CceeeecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHH
Q 011718 258 TPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337 (479)
Q Consensus 258 ~~~v~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~ 337 (479)
+ ...++.++|++|..|+....|...|..||.|..|.+.... -||+|.|.+...|+.|+
T Consensus 451 ---------k---------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq----~yayi~yes~~~aq~a~ 508 (975)
T KOG0112|consen 451 ---------K---------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ----PYAYIQYESPPAAQAAT 508 (975)
T ss_pred ---------c---------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC----cceeeecccCccchhhH
Confidence 0 1114789999999999999999999999999999887766 69999999999999999
Q ss_pred HhcCCceecC--eEEEEEecCCCCCC
Q 011718 338 KDTEKYEIDG--QVLEVALARPQTNK 361 (479)
Q Consensus 338 ~~~~~~~~~g--~~i~v~~a~~~~~~ 361 (479)
..|.+..|++ +.|.|.|+.+....
T Consensus 509 ~~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 509 HDMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred HHHhcCcCCCCCcccccccccCCCCC
Confidence 9999999987 78999999877543
No 121
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.05 E-value=6.3e-10 Score=107.06 Aligned_cols=162 Identities=25% Similarity=0.451 Sum_probs=124.4
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
+-....|||++||..+++.++++++..||++....++.+..+|.++||||.+|.+.-....|+..|||+.+.+++|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 33556799999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCC------------------------------ceeeccCCC--CC-cCH-------HHHHHHHHhhCCceeEEEeeeC
Q 011718 180 SETN------------------------------NRLFIGNVP--KS-WTE-------KEFRKVIEDVGPGVDTIELIKD 219 (479)
Q Consensus 180 a~~~------------------------------~~l~v~nl~--~~-~~~-------~~l~~~f~~~g~~i~~~~~~~~ 219 (479)
+-.. ..|++.|+= .+ ..+ ++++.-+.+||. |..|.+.+.
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~-v~~v~ipr~ 444 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGA-VRSVEIPRP 444 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCc-eeEEecCCC
Confidence 6431 111122210 00 111 333344567787 888877665
Q ss_pred -C-CCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCceeeec
Q 011718 220 -P-QAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWA 264 (479)
Q Consensus 220 -~-~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~ 264 (479)
. .......|.-||+|.+.+++..|...|.+. +..++.+...+.
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~Gr--KF~nRtVvtsYy 489 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGR--KFANRTVVASYY 489 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCc--eeCCcEEEEEec
Confidence 1 223445677899999999999999999954 556666665554
No 122
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.3e-10 Score=102.17 Aligned_cols=82 Identities=20% Similarity=0.345 Sum_probs=76.4
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
+.+.|||..|.+-+|+++|.-+|+.||.|..|.++++..+. -.||||+|++.+++.+|.-+|++..|+.++|+|.|++
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 35789999999999999999999999999999999999765 6899999999999999999999999999999999998
Q ss_pred CCCC
Q 011718 357 PQTN 360 (479)
Q Consensus 357 ~~~~ 360 (479)
+...
T Consensus 318 SVsk 321 (479)
T KOG0415|consen 318 SVSK 321 (479)
T ss_pred hhhh
Confidence 7654
No 123
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.01 E-value=1.1e-09 Score=91.10 Aligned_cols=83 Identities=27% Similarity=0.450 Sum_probs=75.5
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhccc-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPI-GEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~-G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
......++|..||.-+-+..|..+|.+| |.|..+++.+++.||.++|||||+|.+++.|.-|.+.||+-+|.++-|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3456679999999999999999999998 789999999999999999999999999999999999999999999999887
Q ss_pred ccCC
Q 011718 179 MSET 182 (479)
Q Consensus 179 ~a~~ 182 (479)
.-.+
T Consensus 126 vmpp 129 (214)
T KOG4208|consen 126 VMPP 129 (214)
T ss_pred EeCc
Confidence 6544
No 124
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.92 E-value=2.5e-09 Score=101.43 Aligned_cols=78 Identities=26% Similarity=0.456 Sum_probs=71.9
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
.++|||.+|...+...+|+.||++||+|+-..++.+.... ++|+||++.+.++|.+||..||...|.|+.|.|..++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 5789999999999999999999999999988888776544 89999999999999999999999999999999998864
No 125
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=6.1e-09 Score=93.35 Aligned_cols=75 Identities=27% Similarity=0.514 Sum_probs=68.6
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcC-CceecCeEEEEEecCC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTE-KYEIDGQVLEVALARP 357 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~-~~~~~g~~i~v~~a~~ 357 (479)
..++|||++|-..+++.+|+++|.+||.|..|++.... ++|||+|.+.++|+.|..++- ...|+|++|+|.|..+
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~----~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK----GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc----ccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 35799999999999999999999999999999998877 799999999999999887754 5679999999999988
No 126
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=3.6e-09 Score=94.74 Aligned_cols=78 Identities=26% Similarity=0.436 Sum_probs=68.7
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHh-cCCCCCCCeeee
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL-CSKDFKGKTIRC 177 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l-~~~~~~g~~l~v 177 (479)
.+...++|||++|-..+++.+|+++|-+||.|.+|.++.. +++|||+|.+.++|+.|..++ +...|.|++|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 3446789999999999999999999999999999999765 459999999999999999765 444589999999
Q ss_pred eccCC
Q 011718 178 SMSET 182 (479)
Q Consensus 178 ~~a~~ 182 (479)
.|..+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99887
No 127
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.88 E-value=5.6e-09 Score=86.99 Aligned_cols=79 Identities=20% Similarity=0.436 Sum_probs=71.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcC-CCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRH-GEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~-G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
...++|..||..+.+..|..+|.+| |.|..+++-+++. |+ ||||||+|++.+.|.-|.+.||++.|.++.|.|.+-.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 3579999999999999999999998 7888899967765 44 9999999999999999999999999999999999987
Q ss_pred CC
Q 011718 357 PQ 358 (479)
Q Consensus 357 ~~ 358 (479)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 76
No 128
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=1.9e-10 Score=114.29 Aligned_cols=134 Identities=26% Similarity=0.313 Sum_probs=115.7
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
...+++||+||+..+.+.+|...|..+|.|..+.+....+.++.+|+|||.|...+++.+|+..... .+.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~-~~~g-------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDS-CFFG-------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhh-hhhh--------
Confidence 3557899999999999999999999999888888776667799999999999999999999976444 4444
Q ss_pred CCCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhh
Q 011718 181 ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMT 248 (479)
Q Consensus 181 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~ 248 (479)
+..|+|.|+|+..|.+.|+.++..+|. +...+++.. ..++.+|.++|.|.+..++.++.....
T Consensus 736 --K~~v~i~g~pf~gt~e~~k~l~~~~gn-~~~~~~vt~--r~gkpkg~a~v~y~~ea~~s~~~~s~d 798 (881)
T KOG0128|consen 736 --KISVAISGPPFQGTKEELKSLASKTGN-VTSLRLVTV--RAGKPKGKARVDYNTEADASRKVASVD 798 (881)
T ss_pred --hhhhheeCCCCCCchHHHHhhccccCC-ccccchhhh--hccccccceeccCCCcchhhhhcccch
Confidence 567899999999999999999999998 777776664 568999999999999999988776665
No 129
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.83 E-value=8.7e-08 Score=85.78 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=62.3
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCC--CEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEe
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHG--EVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVAL 354 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 354 (479)
..++||+||-|++|+++|.+.+...| .+.+++++.++. +. ||||+|...+..+.++.++.|..+.|.|..-.|.-
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 35799999999999999999988777 556677766664 34 99999999999999999999999999997655543
No 130
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.78 E-value=5e-08 Score=82.02 Aligned_cols=84 Identities=23% Similarity=0.463 Sum_probs=70.8
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCC-C--CceEEEEeCChHHHHHHHHhcCCceec---CeEEEEE
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG-K--RDFGFIHYAERSSALKAIKDTEKYEID---GQVLEVA 353 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~-~--~g~~fV~f~~~~~a~~a~~~~~~~~~~---g~~i~v~ 353 (479)
.++|||.+||.++-.-+|..+|..|-....+.|.....+ . +-+|||+|.+..+|..|+.+|||..|+ +..|+|.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 589999999999999999999999977776665544432 2 689999999999999999999999887 6889999
Q ss_pred ecCCCCCCCC
Q 011718 354 LARPQTNKRT 363 (479)
Q Consensus 354 ~a~~~~~~~~ 363 (479)
+|+....+..
T Consensus 114 lAKSNtK~kr 123 (284)
T KOG1457|consen 114 LAKSNTKRKR 123 (284)
T ss_pred ehhcCccccc
Confidence 9987665543
No 131
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.73 E-value=4.3e-08 Score=86.27 Aligned_cols=81 Identities=25% Similarity=0.447 Sum_probs=73.0
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
....+|+|.|||+.++.++|++||..||.+..+.+-.++. |++.|+|-|.|...++|.+|++.+++..|.|+.|.+...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 3447899999999999999999999999888888777765 999999999999999999999999999999999988776
Q ss_pred CC
Q 011718 181 ET 182 (479)
Q Consensus 181 ~~ 182 (479)
..
T Consensus 160 ~~ 161 (243)
T KOG0533|consen 160 SS 161 (243)
T ss_pred cC
Confidence 54
No 132
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.72 E-value=4.7e-08 Score=86.03 Aligned_cols=82 Identities=23% Similarity=0.423 Sum_probs=76.5
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
..+|+|.|||+.|++++|+++|..||.++.+-+-.++.+. .|.|-|.|...++|.+|++.+++..++|+.+++.+..+.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 3689999999999999999999999999999999999988 899999999999999999999999999999999988776
Q ss_pred CCC
Q 011718 359 TNK 361 (479)
Q Consensus 359 ~~~ 361 (479)
...
T Consensus 163 ~~~ 165 (243)
T KOG0533|consen 163 SQS 165 (243)
T ss_pred ccc
Confidence 543
No 133
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.72 E-value=1.3e-08 Score=93.35 Aligned_cols=82 Identities=32% Similarity=0.613 Sum_probs=75.9
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~ 181 (479)
....|||++||.++++.+|+++|.+||.|..+.++.+..+.+.++|+||.|.+.+++++++. ..-+.|.++.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 46689999999999999999999999999999999999999999999999999999999996 47888999999999987
Q ss_pred CCc
Q 011718 182 TNN 184 (479)
Q Consensus 182 ~~~ 184 (479)
++.
T Consensus 175 pk~ 177 (311)
T KOG4205|consen 175 PKE 177 (311)
T ss_pred chh
Confidence 653
No 134
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.67 E-value=2.1e-07 Score=69.71 Aligned_cols=78 Identities=24% Similarity=0.288 Sum_probs=65.1
Q ss_pred CeEEECCCCCCCCHHHHHHhhcc--cCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCC----CCeeee
Q 011718 104 SEVFIGGLPKDASEEDLRDLCEP--IGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFK----GKTIRC 177 (479)
Q Consensus 104 ~~l~V~nLp~~~te~~l~~~f~~--~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~----g~~l~v 177 (479)
+||.|+|||...|.+.|.+++.. .|...-+.+..|..++.+.|||||.|.+.+.|.+..+.++|..|. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999988743 255666778888888999999999999999999999999998885 345555
Q ss_pred eccC
Q 011718 178 SMSE 181 (479)
Q Consensus 178 ~~a~ 181 (479)
.+|+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 5553
No 135
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.67 E-value=4.5e-09 Score=95.37 Aligned_cols=207 Identities=15% Similarity=0.216 Sum_probs=127.7
Q ss_pred CeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCC---CCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDS---GESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 104 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~---g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
..|.|.||.+.+|.+.+..||.-.|.|..++|+.+... ......|||.|.+...+..|- .|.+++|-++.|.|.+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 37999999999999999999999999999999885431 234568999999999998887 57888888888877654
Q ss_pred CCCceeeccCCCCCcCHHHHHHHHHhhCCceeEE-EeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCcc-ccCCCC
Q 011718 181 ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTI-ELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANF-KLDGNT 258 (479)
Q Consensus 181 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~-~~~~~~ 258 (479)
... +..... +|..++. -..+ .++. .-| |.|.+. .+ .++...
T Consensus 87 ~~~-----------~~p~r~--af~~l~~-~navprll~-------pdg---~Lp~~~-------------~lt~~nh~p 129 (479)
T KOG4676|consen 87 GDE-----------VIPDRF--AFVELAD-QNAVPRLLP-------PDG---VLPGDR-------------PLTKINHSP 129 (479)
T ss_pred CCC-----------CCccHH--HHHhcCc-ccccccccC-------CCC---ccCCCC-------------ccccccCCc
Confidence 321 111111 3333332 1111 0000 000 101000 00 011111
Q ss_pred ceeeecCCCCCC-CchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHH
Q 011718 259 PTVSWAEPKSTP-DHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337 (479)
Q Consensus 259 ~~v~~~~~~~~~-~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~ 337 (479)
..+-.. |...+ ........-..+|+|++|+..+...++.+.|..+|.|...++..... .-+|.|.|....+...|+
T Consensus 130 ~ailkt-P~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~--s~~c~~sf~~qts~~hal 206 (479)
T KOG4676|consen 130 NAILKT-PELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSR--SSSCSHSFRKQTSSKHAL 206 (479)
T ss_pred cceecC-CCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCC--CcchhhhHhhhhhHHHHH
Confidence 111111 11111 01111122247899999999999999999999999998776654332 357889999988888988
Q ss_pred HhcCCceecCeEEEE
Q 011718 338 KDTEKYEIDGQVLEV 352 (479)
Q Consensus 338 ~~~~~~~~~g~~i~v 352 (479)
. ++|..+.-....+
T Consensus 207 r-~~gre~k~qhsr~ 220 (479)
T KOG4676|consen 207 R-SHGRERKRQHSRR 220 (479)
T ss_pred H-hcchhhhhhhhhh
Confidence 8 4665555333333
No 136
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.63 E-value=4.1e-08 Score=84.45 Aligned_cols=74 Identities=31% Similarity=0.396 Sum_probs=63.5
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCC--------CCce----eEEEEEecCHHHHHHHHHHhcCCC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDS--------GESK----GFAFVAFRSKEVAKRAIDELCSKD 169 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~--------g~~~----g~afV~F~~~e~a~~Al~~l~~~~ 169 (479)
..-.|||++||+.+...-|+++|+.||.|-+|.|.+...+ |.++ .-+||+|.+...|+++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3457999999999999999999999999999998877655 2222 248899999999999999999999
Q ss_pred CCCCee
Q 011718 170 FKGKTI 175 (479)
Q Consensus 170 ~~g~~l 175 (479)
|.|++-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 999754
No 137
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.63 E-value=3.6e-08 Score=84.67 Aligned_cols=80 Identities=10% Similarity=0.256 Sum_probs=71.9
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
..+||.+.|...++++.|-..|.+|-.....++++++.+. +||+||.|.+..++..|+..|++..++.+.|++....-
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhH
Confidence 3689999999999999999999999988888888888644 99999999999999999999999999999999876654
Q ss_pred CC
Q 011718 358 QT 359 (479)
Q Consensus 358 ~~ 359 (479)
+.
T Consensus 270 ke 271 (290)
T KOG0226|consen 270 KE 271 (290)
T ss_pred Hh
Confidence 43
No 138
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.61 E-value=1.2e-07 Score=85.21 Aligned_cols=79 Identities=29% Similarity=0.386 Sum_probs=73.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEE--------EEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEE
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVT--------KVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVL 350 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--------~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i 350 (479)
++.|||.|||.++|.+++.++|++||.|. .|.|.++..|. ||=|.+.|--.+++..|+..|++..|.|+.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 56799999999999999999999999887 58899999988 9999999999999999999999999999999
Q ss_pred EEEecCCC
Q 011718 351 EVALARPQ 358 (479)
Q Consensus 351 ~v~~a~~~ 358 (479)
+|..|+-.
T Consensus 214 rVerAkfq 221 (382)
T KOG1548|consen 214 RVERAKFQ 221 (382)
T ss_pred EEehhhhh
Confidence 99998643
No 139
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.61 E-value=2.2e-07 Score=65.81 Aligned_cols=71 Identities=28% Similarity=0.501 Sum_probs=48.7
Q ss_pred CeEEECCCCCCCCHHHHH----HhhcccC-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeee
Q 011718 104 SEVFIGGLPKDASEEDLR----DLCEPIG-EVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCS 178 (479)
Q Consensus 104 ~~l~V~nLp~~~te~~l~----~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~ 178 (479)
+.|+|.|||.+.+...|+ .|+..|| .|..|. .+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999998877754 5666776 666652 3579999999999999999999999999999999
Q ss_pred ccCCCc
Q 011718 179 MSETNN 184 (479)
Q Consensus 179 ~a~~~~ 184 (479)
+....+
T Consensus 73 ~~~~~r 78 (90)
T PF11608_consen 73 FSPKNR 78 (90)
T ss_dssp SS--S-
T ss_pred EcCCcc
Confidence 886443
No 140
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.61 E-value=1.8e-08 Score=84.34 Aligned_cols=134 Identities=23% Similarity=0.396 Sum_probs=108.5
Q ss_pred CCCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCce
Q 011718 181 ETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPT 260 (479)
Q Consensus 181 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 260 (479)
...++|||.|+...++++.|.++|-+.|+ |..+.|..+. .+..+ ||||.|.++.....|++.++ +..+.+..+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGP-V~kv~ip~~~--d~~~k-Fa~v~f~~E~sv~~a~~L~n--g~~l~~~e~q 80 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGP-VYKVGIPSGQ--DQEQK-FAYVFFPNENSVQLAGQLEN--GDDLEEDEEQ 80 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCc-eEEEeCCCCc--cCCCc-eeeeecccccchhhhhhhcc--cchhccchhh
Confidence 44689999999999999999999999999 8888887752 34445 99999999999999999998 4555555555
Q ss_pred eeecCCCCCCCchhhhhhccceEEecC----CCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHH
Q 011718 261 VSWAEPKSTPDHSAAAASQVKALYVKN----LPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALK 335 (479)
Q Consensus 261 v~~~~~~~~~~~~~~~~~~~~~l~v~n----l~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~ 335 (479)
+ +++.++ |...++.+.+...|+.-+.+..+++..+.+++ +.++||.+-...+.-.
T Consensus 81 ~--------------------~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~ 140 (267)
T KOG4454|consen 81 R--------------------TLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPF 140 (267)
T ss_pred c--------------------ccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcH
Confidence 4 455566 66788999999999999999999999999877 8899998866555555
Q ss_pred HHHhc
Q 011718 336 AIKDT 340 (479)
Q Consensus 336 a~~~~ 340 (479)
++...
T Consensus 141 ~~~~y 145 (267)
T KOG4454|consen 141 ALDLY 145 (267)
T ss_pred Hhhhh
Confidence 55543
No 141
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.60 E-value=7.5e-08 Score=91.87 Aligned_cols=78 Identities=23% Similarity=0.493 Sum_probs=66.5
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
...+|||+|||.+++..+|+++|+.||.|....|......++...||||+|.+.++++.||.+ +...|.+++|.|+.-
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 445699999999999999999999999999988877543244458999999999999999976 677889999988653
No 142
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.58 E-value=9.2e-08 Score=84.60 Aligned_cols=80 Identities=26% Similarity=0.400 Sum_probs=74.5
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
...+.|||+|+.+.+|.++|..+|+.||.|..|.|.+++.++.+++||||+|.+.+.+..|+. |++..|.++.+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 456789999999999999999999999999999999999999999999999999999999997 8999999999998765
Q ss_pred C
Q 011718 181 E 181 (479)
Q Consensus 181 ~ 181 (479)
.
T Consensus 178 r 178 (231)
T KOG4209|consen 178 R 178 (231)
T ss_pred e
Confidence 4
No 143
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.55 E-value=4.2e-07 Score=64.37 Aligned_cols=70 Identities=26% Similarity=0.402 Sum_probs=48.8
Q ss_pred ceEEecCCCCCCCHHH----HHHHHhcCC-CEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 281 KALYVKNLPENTTTKQ----LKELFQRHG-EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~----l~~~f~~~G-~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
..|+|.|||.+.+... |++++..|| .|..|.= +.|+|.|.+.+.|.+|.+.|+|..+.|.+|.|++.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~~--------~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVSG--------GTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--T--------T-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEeC--------CEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 4699999999888755 566677886 7777731 67999999999999999999999999999999998
Q ss_pred CCC
Q 011718 356 RPQ 358 (479)
Q Consensus 356 ~~~ 358 (479)
...
T Consensus 75 ~~~ 77 (90)
T PF11608_consen 75 PKN 77 (90)
T ss_dssp --S
T ss_pred CCc
Confidence 543
No 144
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.55 E-value=1.2e-07 Score=81.46 Aligned_cols=74 Identities=23% Similarity=0.454 Sum_probs=67.9
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCCC
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQTN 360 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~~ 360 (479)
..+||++||+.+.+.+|..||..||.|..|.+.. +|+||+|.+..+|..|+..+|+..|.+..+.|.++.....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec------ccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 4699999999999999999999999999998866 8999999999999999999999999998888888886543
No 145
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.54 E-value=8.4e-08 Score=82.44 Aligned_cols=81 Identities=26% Similarity=0.439 Sum_probs=75.4
Q ss_pred CCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 101 PHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 101 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
....+||.+.|-.+++.+-|...|++|-.....++++++.|++++||+||.|.+..++..|++.|+|+.++.+.|.+..+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 35678999999999999999999999998899999999999999999999999999999999999999999999987665
Q ss_pred C
Q 011718 181 E 181 (479)
Q Consensus 181 ~ 181 (479)
.
T Consensus 268 ~ 268 (290)
T KOG0226|consen 268 E 268 (290)
T ss_pred h
Confidence 3
No 146
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.52 E-value=2.5e-08 Score=91.47 Aligned_cols=158 Identities=22% Similarity=0.334 Sum_probs=126.6
Q ss_pred ceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCCCceeee
Q 011718 184 NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGNTPTVSW 263 (479)
Q Consensus 184 ~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 263 (479)
+.+|++||.+..+..+|..+|....-....-.+++ .+|+||.+.+...+.+|+..+++ ...+.|..+.+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k--------~gyafvd~pdq~wa~kaie~~sg-k~elqGkr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK--------SGYAFVDCPDQQWANKAIETLSG-KVELQGKRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee--------cceeeccCCchhhhhhhHHhhch-hhhhcCceeeccc
Confidence 46899999999999999999987643233333333 48999999999999999999986 5677888888877
Q ss_pred cCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCc
Q 011718 264 AEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKY 343 (479)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~ 343 (479)
..++.. .++.+-|.|+|...-|+.|..++.+||.|..|.......- .-..-|+|.+.+.++.||..++++
T Consensus 73 sv~kkq---------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e-tavvnvty~~~~~~~~ai~kl~g~ 142 (584)
T KOG2193|consen 73 SVPKKQ---------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE-TAVVNVTYSAQQQHRQAIHKLNGP 142 (584)
T ss_pred hhhHHH---------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH-HHHHHHHHHHHHHHHHHHHhhcch
Confidence 655532 3467999999999999999999999999998876443321 234457889999999999999999
Q ss_pred eecCeEEEEEecCCCCC
Q 011718 344 EIDGQVLEVALARPQTN 360 (479)
Q Consensus 344 ~~~g~~i~v~~a~~~~~ 360 (479)
.+....++|.|--....
T Consensus 143 Q~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 143 QLENQHLKVGYIPDEQN 159 (584)
T ss_pred HhhhhhhhcccCchhhh
Confidence 99999999988755443
No 147
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.51 E-value=2.4e-07 Score=90.67 Aligned_cols=82 Identities=20% Similarity=0.307 Sum_probs=73.9
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCC---CCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeee
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKD---SGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIR 176 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~---~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~ 176 (479)
.+-.+.|||+||++.++++.|...|..||+|..|+|+..+. ..+.+-|+||.|.+..+|++|++.|++..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 55678899999999999999999999999999999986543 345677999999999999999999999999999999
Q ss_pred eeccC
Q 011718 177 CSMSE 181 (479)
Q Consensus 177 v~~a~ 181 (479)
+.|++
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 99984
No 148
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.50 E-value=6.7e-06 Score=73.97 Aligned_cols=78 Identities=19% Similarity=0.383 Sum_probs=68.8
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccC--ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIG--EVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
..-++||+||-|.+|.++|.+.+...| .|.+++++.++..|.+||||+|...+..++++.++.|-.+.|+|+.-.|..
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 455799999999999999999988777 688999999999999999999999999999999998888888887665543
No 149
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.49 E-value=8e-07 Score=66.64 Aligned_cols=78 Identities=21% Similarity=0.375 Sum_probs=67.7
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcC--CCEEEEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceec----CeEEEE
Q 011718 281 KALYVKNLPENTTTKQLKELFQRH--GEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEID----GQVLEV 352 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~--G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~----g~~i~v 352 (479)
+||-|+|||...|.++|.+++..+ |....+.|+.+-.++ .|||||-|.+++.|.+-...++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999998663 677788888887655 899999999999999999999998776 478899
Q ss_pred EecCCC
Q 011718 353 ALARPQ 358 (479)
Q Consensus 353 ~~a~~~ 358 (479)
.+|+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 988754
No 150
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.37 E-value=2.2e-07 Score=88.92 Aligned_cols=69 Identities=28% Similarity=0.485 Sum_probs=64.1
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEE
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLE 351 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~ 351 (479)
..+|+|-|||..++.++|+.+|+.||+|..|+..+.+ ++++||+|.+..+|++|+++|++..|.|+.|+
T Consensus 75 ~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~---~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 75 QGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK---RGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc---CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 5789999999999999999999999999997776655 47999999999999999999999999999998
No 151
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.37 E-value=1.1e-06 Score=79.86 Aligned_cols=84 Identities=19% Similarity=0.292 Sum_probs=74.4
Q ss_pred hhccceEEecCCCCCCCHHHHHHHHhcCCCEE--------EEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceec
Q 011718 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVT--------KVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEID 346 (479)
Q Consensus 277 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--------~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~ 346 (479)
.....+|||.+||..++.++|.++|.++|.|. .|.|.+++.+. |+-|.|+|.+...|+.||..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34467899999999999999999999999887 35666676654 899999999999999999999999999
Q ss_pred CeEEEEEecCCCCC
Q 011718 347 GQVLEVALARPQTN 360 (479)
Q Consensus 347 g~~i~v~~a~~~~~ 360 (479)
+..|+|.+|..+..
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999999987764
No 152
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.34 E-value=1.3e-06 Score=77.45 Aligned_cols=79 Identities=23% Similarity=0.399 Sum_probs=73.2
Q ss_pred ccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 279 QVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 279 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
....+||+|+.+.+|.++|..+|+.||.|..|.|..++... |+|+||+|.+.+.+..|+. |++..|.++.|.|.+.+
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 35789999999999999999999999999999999998753 9999999999999999999 99999999999999887
Q ss_pred CC
Q 011718 357 PQ 358 (479)
Q Consensus 357 ~~ 358 (479)
-.
T Consensus 179 ~~ 180 (231)
T KOG4209|consen 179 TN 180 (231)
T ss_pred ee
Confidence 65
No 153
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.32 E-value=6.4e-07 Score=81.41 Aligned_cols=83 Identities=31% Similarity=0.512 Sum_probs=76.1
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCcee--------EEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVF--------EVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGK 173 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~--------~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~ 173 (479)
...+|||.+||..+++++|.++|.+||.|. .|+|.+++.|++.|+-|.|.|.+...|+.|+..+++..+.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 455899999999999999999999999874 578999999999999999999999999999999999999999
Q ss_pred eeeeeccCCCc
Q 011718 174 TIRCSMSETNN 184 (479)
Q Consensus 174 ~l~v~~a~~~~ 184 (479)
+|+|..+....
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99998887554
No 154
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.29 E-value=1.6e-06 Score=85.07 Aligned_cols=83 Identities=22% Similarity=0.349 Sum_probs=73.8
Q ss_pred hhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC----CC-CceEEEEeCChHHHHHHHHhcCCceecCeEEE
Q 011718 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS----GK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLE 351 (479)
Q Consensus 277 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~----~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~ 351 (479)
...++.|||+||++.++++.|...|..||.|..|+|+.-+. .+ +.++||-|-+..+|.+|+..|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 44568999999999999999999999999999999876553 22 78999999999999999999999999999999
Q ss_pred EEecCCCC
Q 011718 352 VALARPQT 359 (479)
Q Consensus 352 v~~a~~~~ 359 (479)
+-|++...
T Consensus 251 ~gWgk~V~ 258 (877)
T KOG0151|consen 251 LGWGKAVP 258 (877)
T ss_pred eccccccc
Confidence 99986654
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.26 E-value=1.7e-06 Score=66.63 Aligned_cols=71 Identities=25% Similarity=0.416 Sum_probs=46.1
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCC-----ceecCeEEEEEec
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEK-----YEIDGQVLEVALA 355 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~-----~~~~g~~i~v~~a 355 (479)
..|+|.+++..++.++|+++|++||.|..|.+.... ..|||.|.+.+.|+.|+..+.- ..|.+..+.+.+-
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~----~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD----TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC----CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 468999999999999999999999999999998877 5799999999999999987653 3566666666553
No 156
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.15 E-value=6.1e-06 Score=63.61 Aligned_cols=60 Identities=27% Similarity=0.462 Sum_probs=39.9
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCC
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSK 168 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~ 168 (479)
++.|.|.+++..++.++|+++|+.||.|..|.+.+.. ..|||.|.+.+.|+.|+..+.-.
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhc
Confidence 3679999999999999999999999999999886542 37999999999999999887644
No 157
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.94 E-value=1.6e-05 Score=71.26 Aligned_cols=89 Identities=19% Similarity=0.421 Sum_probs=65.9
Q ss_pred CCCeEEECCCCCCCCHHH----H--HHhhcccCceeEEEEeecCCC-CCceeE--EEEEecCHHHHHHHHHHhcCCCCCC
Q 011718 102 HGSEVFIGGLPKDASEED----L--RDLCEPIGEVFEVGLVKDKDS-GESKGF--AFVAFRSKEVAKRAIDELCSKDFKG 172 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~----l--~~~f~~~G~i~~v~i~~~~~~-g~~~g~--afV~F~~~e~a~~Al~~l~~~~~~g 172 (479)
...-|||-+||+.+..++ | .++|.+||.|..|.|-+.-.+ ....+. .||+|.+.++|.+||...+|..+.|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 344689999999877666 3 379999999988876554211 111222 4999999999999999999999999
Q ss_pred CeeeeeccCCC-ceeeccC
Q 011718 173 KTIRCSMSETN-NRLFIGN 190 (479)
Q Consensus 173 ~~l~v~~a~~~-~~l~v~n 190 (479)
|.|+..+...+ ++-|++|
T Consensus 193 r~lkatYGTTKYCtsYLRn 211 (480)
T COG5175 193 RVLKATYGTTKYCTSYLRN 211 (480)
T ss_pred ceEeeecCchHHHHHHHcC
Confidence 99999886643 3344444
No 158
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.87 E-value=0.00027 Score=65.91 Aligned_cols=66 Identities=18% Similarity=0.308 Sum_probs=55.4
Q ss_pred hccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCC---CC---C---------CCceEEEEeCChHHHHHHHHhcCC
Q 011718 278 SQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPG---KS---G---------KRDFGFIHYAERSSALKAIKDTEK 342 (479)
Q Consensus 278 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~---~~---~---------~~g~~fV~f~~~~~a~~a~~~~~~ 342 (479)
.++++|.+.|||.+-.-+.|.++|..||.|+.|+|..- .. + .+-+|||+|...+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 45789999999999999999999999999999998654 11 1 134799999999999999998864
Q ss_pred c
Q 011718 343 Y 343 (479)
Q Consensus 343 ~ 343 (479)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 159
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.79 E-value=5.4e-05 Score=67.97 Aligned_cols=79 Identities=22% Similarity=0.455 Sum_probs=64.6
Q ss_pred cceEEecCCCCCCCHHHH------HHHHhcCCCEEEEEccCCCC--CC-Cce--EEEEeCChHHHHHHHHhcCCceecCe
Q 011718 280 VKALYVKNLPENTTTKQL------KELFQRHGEVTKVVTPPGKS--GK-RDF--GFIHYAERSSALKAIKDTEKYEIDGQ 348 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l------~~~f~~~G~v~~v~~~~~~~--~~-~g~--~fV~f~~~~~a~~a~~~~~~~~~~g~ 348 (479)
.+-+||-+|++.+-.+++ .++|.+||.|.+|.+-+... .+ .+. .||+|.+.++|.+||...+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 356899999998866652 57899999999998876542 11 233 49999999999999999999999999
Q ss_pred EEEEEecCCC
Q 011718 349 VLEVALARPQ 358 (479)
Q Consensus 349 ~i~v~~a~~~ 358 (479)
.|+..+...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999987654
No 160
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.77 E-value=1.8e-05 Score=72.78 Aligned_cols=81 Identities=30% Similarity=0.553 Sum_probs=73.5
Q ss_pred CCCeEE-ECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 102 HGSEVF-IGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 102 ~~~~l~-V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
...++| |.+|++.++.++|+.+|..+|.|..+++..++.++..+++|||.|.....+..++.. +...+.++.+++...
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 344455 999999999999999999999999999999999999999999999999999999976 788899999999887
Q ss_pred CCC
Q 011718 181 ETN 183 (479)
Q Consensus 181 ~~~ 183 (479)
...
T Consensus 262 ~~~ 264 (285)
T KOG4210|consen 262 EPR 264 (285)
T ss_pred CCC
Confidence 654
No 161
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.71 E-value=1.1e-05 Score=74.52 Aligned_cols=144 Identities=22% Similarity=0.339 Sum_probs=107.5
Q ss_pred eEEECCCCCCCCHHHHHHhhcccCc-eeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCC-CCCCeeeeeccCC
Q 011718 105 EVFIGGLPKDASEEDLRDLCEPIGE-VFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKD-FKGKTIRCSMSET 182 (479)
Q Consensus 105 ~l~V~nLp~~~te~~l~~~f~~~G~-i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~-~~g~~l~v~~a~~ 182 (479)
.||++||...++..+|..+|...-. ...-.++ ..|||||.+.+..-|.+|++.++++. +.|+++.|..+.+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 5899999999999999999965411 1111111 35899999999999999999999875 8899999988765
Q ss_pred C----ceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeee-CCCCCCCCcceEEEEeCChhHHHHHHHHhhcCccccCCC
Q 011718 183 N----NRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIK-DPQAPSRNRGFAFVLYYNNACADYSRQKMTSANFKLDGN 257 (479)
Q Consensus 183 ~----~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~-~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~ 257 (479)
+ +++-|.|+|+....+-|..++..||. ++.|.... ++ ..-.--|+|.+.+.+..++..+++. .+...
T Consensus 76 kkqrsrk~Qirnippql~wevld~Ll~qyg~-ve~~eqvnt~~-----etavvnvty~~~~~~~~ai~kl~g~--Q~en~ 147 (584)
T KOG2193|consen 76 KKQRSRKIQIRNIPPQLQWEVLDSLLAQYGT-VENCEQVNTDS-----ETAVVNVTYSAQQQHRQAIHKLNGP--QLENQ 147 (584)
T ss_pred HHHHhhhhhHhcCCHHHHHHHHHHHHhccCC-HhHhhhhccch-----HHHHHHHHHHHHHHHHHHHHhhcch--Hhhhh
Confidence 3 57999999999999999999999998 77775532 22 1122346777788888888888843 33334
Q ss_pred Cceeee
Q 011718 258 TPTVSW 263 (479)
Q Consensus 258 ~~~v~~ 263 (479)
.+.+.+
T Consensus 148 ~~k~~Y 153 (584)
T KOG2193|consen 148 HLKVGY 153 (584)
T ss_pred hhhccc
Confidence 444443
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.68 E-value=8.8e-05 Score=49.20 Aligned_cols=52 Identities=23% Similarity=0.532 Sum_probs=43.0
Q ss_pred CeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH
Q 011718 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162 (479)
Q Consensus 104 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al 162 (479)
+.|-|.+.+.+..+. |..+|..||.|..+.+- ....+.||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 578999999887754 55588899999998874 23458999999999999986
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.64 E-value=0.00016 Score=47.99 Aligned_cols=52 Identities=23% Similarity=0.500 Sum_probs=42.3
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHH
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~ 337 (479)
+.|-|.+.+.+.. +.|..+|..||.|..+.+.... .+.+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~----~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPEST----NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCC----cEEEEEECCHHHHHhhC
Confidence 4578888886655 4455689999999999998433 68999999999999985
No 164
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.0002 Score=68.92 Aligned_cols=76 Identities=24% Similarity=0.381 Sum_probs=62.8
Q ss_pred cceEEecCCCCCCC------HHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecC-eEEE
Q 011718 280 VKALYVKNLPENTT------TKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDG-QVLE 351 (479)
Q Consensus 280 ~~~l~v~nl~~~~~------~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g-~~i~ 351 (479)
.+.|+|.|+|---. ..-|..+|+++|+|+.+.++.+..+. +||.|++|.+..+|+.|++.|||+.|+- ++..
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 36899999985322 24567789999999999999888877 9999999999999999999999998864 6666
Q ss_pred EEec
Q 011718 352 VALA 355 (479)
Q Consensus 352 v~~a 355 (479)
|..-
T Consensus 138 v~~f 141 (698)
T KOG2314|consen 138 VRLF 141 (698)
T ss_pred eehh
Confidence 6543
No 165
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.60 E-value=0.00017 Score=62.62 Aligned_cols=90 Identities=16% Similarity=0.225 Sum_probs=78.7
Q ss_pred HHHHHHHhcCCCCCCCeeeeeccCCCceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCCh
Q 011718 158 AKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNN 237 (479)
Q Consensus 158 a~~Al~~l~~~~~~g~~l~v~~a~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~ 237 (479)
|..|...|.+....++.|+|.++.. ..|+|.||+..++.+.|.+.|+.||+ |+...++.| ..++..+-++|.|...
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~~-a~l~V~nl~~~~sndll~~~f~~fg~-~e~av~~vD--~r~k~t~eg~v~~~~k 82 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAMH-AELYVVNLMQGASNDLLEQAFRRFGP-IERAVAKVD--DRGKPTREGIVEFAKK 82 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeecc-ceEEEEecchhhhhHHHHHhhhhcCc-cchheeeec--ccccccccchhhhhcc
Confidence 5566667899999999999999998 99999999999999999999999999 877777665 3478888999999999
Q ss_pred hHHHHHHHHhhcCc
Q 011718 238 ACADYSRQKMTSAN 251 (479)
Q Consensus 238 ~~a~~a~~~~~~~~ 251 (479)
..+..|+..+....
T Consensus 83 ~~a~~a~rr~~~~g 96 (275)
T KOG0115|consen 83 PNARKAARRCREGG 96 (275)
T ss_pred hhHHHHHHHhccCc
Confidence 99999998885433
No 166
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.59 E-value=0.00011 Score=71.04 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=65.1
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhc-ccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCC---CCCe
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCE-PIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF---KGKT 174 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~---~g~~ 174 (479)
....+..|+|.||=--+|.-.|+.|+. .+|.|+..+| .+-+..|||.|.+.++|...+.+|||..| +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm------DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM------DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH------HHhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 445678899999999999999999997 6677777765 23356899999999999999999999987 4688
Q ss_pred eeeeccCC
Q 011718 175 IRCSMSET 182 (479)
Q Consensus 175 l~v~~a~~ 182 (479)
|.+.+...
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 88888764
No 167
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.45 E-value=6.8e-05 Score=65.06 Aligned_cols=69 Identities=20% Similarity=0.425 Sum_probs=60.0
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCC----------C--C--ceEEEEeCChHHHHHHHHhcCCceec
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG----------K--R--DFGFIHYAERSSALKAIKDTEKYEID 346 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~----------~--~--g~~fV~f~~~~~a~~a~~~~~~~~~~ 346 (479)
-.||+++||+.+....|+++|+.||.|-+|.|.+.... + . --|+|+|.+...|.++...||+..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 57999999999999999999999999999999765432 1 1 13799999999999999999999999
Q ss_pred CeE
Q 011718 347 GQV 349 (479)
Q Consensus 347 g~~ 349 (479)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 863
No 168
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.44 E-value=0.00098 Score=50.52 Aligned_cols=75 Identities=16% Similarity=0.207 Sum_probs=51.2
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEE-ccCC-------CC-CCCceEEEEeCChHHHHHHHHhcCCceecCe-E
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVV-TPPG-------KS-GKRDFGFIHYAERSSALKAIKDTEKYEIDGQ-V 349 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~-~~~~-------~~-~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~-~ 349 (479)
..-|.|-+.|.. ....|.+.|++||.|.+.. +.+. .. ....+..|+|.++.+|.+||. .||..|+|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 356888999987 5567778899999998775 1111 00 113689999999999999998 599999885 4
Q ss_pred EEEEecC
Q 011718 350 LEVALAR 356 (479)
Q Consensus 350 i~v~~a~ 356 (479)
+-|.++.
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5566663
No 169
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.40 E-value=0.0011 Score=57.89 Aligned_cols=105 Identities=22% Similarity=0.358 Sum_probs=81.8
Q ss_pred hHHHHHHHHhhcCccccCCCCceeeecCCCCCCCchhhhhhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCC
Q 011718 238 ACADYSRQKMTSANFKLDGNTPTVSWAEPKSTPDHSAAAASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKS 317 (479)
Q Consensus 238 ~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~ 317 (479)
.-|..|...|. .....++.+.|.|+.. ..|+|.||...++-+.|...|+.||.|....+..+..
T Consensus 5 t~ae~ak~eLd--~~~~~~~~lr~rfa~~--------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r 68 (275)
T KOG0115|consen 5 TLAEIAKRELD--GRFPKGRSLRVRFAMH--------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR 68 (275)
T ss_pred cHHHHHHHhcC--CCCCCCCceEEEeecc--------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc
Confidence 34566666676 5567789999998766 3699999999999999999999999999877777766
Q ss_pred CC-CceEEEEeCChHHHHHHHHhcCC----ceecCeEEEEEecCCC
Q 011718 318 GK-RDFGFIHYAERSSALKAIKDTEK----YEIDGQVLEVALARPQ 358 (479)
Q Consensus 318 ~~-~g~~fV~f~~~~~a~~a~~~~~~----~~~~g~~i~v~~a~~~ 358 (479)
++ .+-++|.|...-.|.+|+..+.- .+..++++-|......
T Consensus 69 ~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~eq~ 114 (275)
T KOG0115|consen 69 GKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPMEQP 114 (275)
T ss_pred ccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhhcc
Confidence 66 77899999999999999998752 2444566655554433
No 170
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.38 E-value=0.00014 Score=67.76 Aligned_cols=66 Identities=23% Similarity=0.339 Sum_probs=56.4
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeec---CCCC--C--------ceeEEEEEecCHHHHHHHHHHhcC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKD---KDSG--E--------SKGFAFVAFRSKEVAKRAIDELCS 167 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~---~~~g--~--------~~g~afV~F~~~e~a~~Al~~l~~ 167 (479)
.+++|.+-|||.+-.-+-|.++|..||.|..|+|++. +.+. . .+-+|+|+|...+.|.+|.+.|+.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 7899999999999888999999999999999999987 3322 1 245799999999999999987654
No 171
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.33 E-value=0.0014 Score=65.94 Aligned_cols=15 Identities=7% Similarity=0.200 Sum_probs=7.6
Q ss_pred cCHHHHHHHHHHhcC
Q 011718 153 RSKEVAKRAIDELCS 167 (479)
Q Consensus 153 ~~~e~a~~Al~~l~~ 167 (479)
.+...+.+|++++-+
T Consensus 207 k~~~eiIrClka~mN 221 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAFMN 221 (1102)
T ss_pred HHHHHHHHHHHHHhc
Confidence 344455566655433
No 172
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.32 E-value=9.8e-05 Score=64.31 Aligned_cols=62 Identities=27% Similarity=0.445 Sum_probs=52.4
Q ss_pred HHHHhhc-ccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccC
Q 011718 119 DLRDLCE-PIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181 (479)
Q Consensus 119 ~l~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~ 181 (479)
+|...|+ +||.|++++|+.+.. -...|-+||.|...++|.+|+..||+..+.|++|...++.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3434444 999999998887754 5678999999999999999999999999999999887764
No 173
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.26 E-value=0.0015 Score=52.52 Aligned_cols=57 Identities=25% Similarity=0.436 Sum_probs=46.6
Q ss_pred HHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 295 KQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 295 ~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
.+|.+.|..||.|.-|++..+. -+|+|.+-++|.+|+. +++..|+|+.|+|++..+.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~~------mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGDT------MWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETTC------EEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeCCe------EEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 4677788999999988887744 7999999999999998 8999999999999998764
No 174
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.001 Score=63.88 Aligned_cols=66 Identities=30% Similarity=0.436 Sum_probs=60.6
Q ss_pred CCCCCCeEEECCCCCCCCHHHHHHhhc-ccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHH
Q 011718 99 LPPHGSEVFIGGLPKDASEEDLRDLCE-PIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~te~~l~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~ 164 (479)
...+.+||||++||--+|.++|..+|. -||-|..|-|=.|+.-+.++|-|-|+|.+..+-.+||.+
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 345788999999999999999999998 899999999999977799999999999999999999975
No 175
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.00089 Score=64.69 Aligned_cols=78 Identities=27% Similarity=0.412 Sum_probs=62.5
Q ss_pred CCCCeEEECCCCCC--CCHHH----HHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCC-CC
Q 011718 101 PHGSEVFIGGLPKD--ASEED----LRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFK-GK 173 (479)
Q Consensus 101 ~~~~~l~V~nLp~~--~te~~----l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~-g~ 173 (479)
.-...|+|-|+|.- ...+. |..+|+++|+|+.+.+..+.. |..+||.|++|.+..+|+.|++.|||..|. ..
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 45568999999953 23333 457899999999999888877 559999999999999999999999998764 55
Q ss_pred eeeeec
Q 011718 174 TIRCSM 179 (479)
Q Consensus 174 ~l~v~~ 179 (479)
++.|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 666644
No 176
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.16 E-value=0.001 Score=50.43 Aligned_cols=76 Identities=14% Similarity=0.221 Sum_probs=50.7
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccCceeEEEEe-ecC------CCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCee
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLV-KDK------DSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~-~~~------~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l 175 (479)
.+.|.|-+.|.. ....|.++|++||.|.+..-+ ++. ..........|+|.++.+|.+||.. ||..|.|..|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 457999999988 446788999999999877510 000 0012344889999999999999975 9999998765
Q ss_pred e-eecc
Q 011718 176 R-CSMS 180 (479)
Q Consensus 176 ~-v~~a 180 (479)
- |.++
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 4 4444
No 177
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.14 E-value=0.0026 Score=64.04 Aligned_cols=11 Identities=18% Similarity=0.398 Sum_probs=4.4
Q ss_pred HHHHHHhhccc
Q 011718 117 EEDLRDLCEPI 127 (479)
Q Consensus 117 e~~l~~~f~~~ 127 (479)
..++-++|...
T Consensus 85 ~~e~~~~F~~~ 95 (1102)
T KOG1924|consen 85 SNEVLELFELM 95 (1102)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 178
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.09 E-value=0.00027 Score=61.70 Aligned_cols=64 Identities=11% Similarity=0.189 Sum_probs=53.1
Q ss_pred HHHHHHHh-cCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 295 KQLKELFQ-RHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 295 ~~l~~~f~-~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
++|...|+ +||.|..+.+-.+..-. +|-++|.|...++|.+|+..||+..++|++|.+.+..-.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 44444555 89999998776655544 789999999999999999999999999999999987544
No 179
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.04 E-value=0.0018 Score=57.41 Aligned_cols=63 Identities=22% Similarity=0.243 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCCEEEEEccCCCCCC---CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 294 TKQLKELFQRHGEVTKVVTPPGKSGK---RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 294 ~~~l~~~f~~~G~v~~v~~~~~~~~~---~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
+++++.-+.+||.|..|.|.....-. ---.||+|...++|.+|+-.|||..|+|+.+...|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 36678889999999998887665422 2247999999999999999999999999999887754
No 180
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=96.98 E-value=0.0068 Score=55.13 Aligned_cols=9 Identities=56% Similarity=0.970 Sum_probs=4.1
Q ss_pred CCCCCCCCC
Q 011718 402 AGAGLQQPM 410 (479)
Q Consensus 402 ~~~~~~~~~ 410 (479)
++.+|++|.
T Consensus 380 GGggyqqp~ 388 (465)
T KOG3973|consen 380 GGGGYQQPQ 388 (465)
T ss_pred CCCCCcCch
Confidence 344444444
No 181
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.94 E-value=0.0014 Score=60.46 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=63.4
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-----CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-----RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
..|.|.||.+++|.++++.+|...|.|..+.|+...... ...|||.|.+...+..|.. |.++.|=++.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 479999999999999999999999999999998754322 4689999999999988887 6777777777777655
Q ss_pred CCC
Q 011718 356 RPQ 358 (479)
Q Consensus 356 ~~~ 358 (479)
...
T Consensus 87 ~~~ 89 (479)
T KOG4676|consen 87 GDE 89 (479)
T ss_pred CCC
Confidence 433
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.80 E-value=0.0026 Score=51.19 Aligned_cols=78 Identities=22% Similarity=0.324 Sum_probs=53.1
Q ss_pred ccCCCCCCCeEEECCCCC------CCCH---HHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhc
Q 011718 96 LLALPPHGSEVFIGGLPK------DASE---EDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166 (479)
Q Consensus 96 ~~~~~~~~~~l~V~nLp~------~~te---~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~ 166 (479)
....-++..||.|.=+.. ...+ .+|.+.|..||.|.-|+++.+ .-||+|.+-++|.+|+. ++
T Consensus 20 i~~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~d 90 (146)
T PF08952_consen 20 ISSQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LD 90 (146)
T ss_dssp S-----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GC
T ss_pred HHhcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cC
Confidence 444556677777776661 1222 256678899999998888754 47999999999999995 79
Q ss_pred CCCCCCCeeeeeccCC
Q 011718 167 SKDFKGKTIRCSMSET 182 (479)
Q Consensus 167 ~~~~~g~~l~v~~a~~ 182 (479)
|..+.|+.|+|....+
T Consensus 91 g~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 91 GIQVNGRTLKIRLKTP 106 (146)
T ss_dssp CSEETTEEEEEEE---
T ss_pred CcEECCEEEEEEeCCc
Confidence 9999999999987543
No 183
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.0056 Score=59.65 Aligned_cols=76 Identities=21% Similarity=0.248 Sum_probs=59.7
Q ss_pred CCCCCCCeEEECCCCCC-CCHHHHHHhhccc----CceeEEEEeecCC----------CCC-------------------
Q 011718 98 ALPPHGSEVFIGGLPKD-ASEEDLRDLCEPI----GEVFEVGLVKDKD----------SGE------------------- 143 (479)
Q Consensus 98 ~~~~~~~~l~V~nLp~~-~te~~l~~~f~~~----G~i~~v~i~~~~~----------~g~------------------- 143 (479)
.....+++|-|-||.|+ +...+|.-+|+.| |.|.+|.|+.... +|.
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 34556789999999997 8999999988776 5899999876542 111
Q ss_pred ------------------ceeEEEEEecCHHHHHHHHHHhcCCCCCCC
Q 011718 144 ------------------SKGFAFVAFRSKEVAKRAIDELCSKDFKGK 173 (479)
Q Consensus 144 ------------------~~g~afV~F~~~e~a~~Al~~l~~~~~~g~ 173 (479)
.-=||.|+|.+.+.|....+..+|..+...
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 012799999999999999999999887644
No 184
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.61 E-value=0.0046 Score=54.89 Aligned_cols=63 Identities=25% Similarity=0.395 Sum_probs=51.4
Q ss_pred HHHHHHhhcccCceeEEEEeecCCCCC-ceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 117 EEDLRDLCEPIGEVFEVGLVKDKDSGE-SKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 117 e~~l~~~f~~~G~i~~v~i~~~~~~g~-~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
++++++-+.+||.|.+|.|...+..-. -.--.||+|...++|.+|+-.|||..|.||.++..+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 456788999999999999887754221 123489999999999999999999999999987654
No 185
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.58 E-value=0.002 Score=62.83 Aligned_cols=80 Identities=21% Similarity=0.242 Sum_probs=63.7
Q ss_pred hhccceEEecCCCCCCCHHHHHHHHhc-CCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCcee---cCeEEEE
Q 011718 277 ASQVKALYVKNLPENTTTKQLKELFQR-HGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEI---DGQVLEV 352 (479)
Q Consensus 277 ~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~---~g~~i~v 352 (479)
...++.|||.||-.-+|.-.|+.++.+ +|.|... ..++- |..|||.|.+.++|...+.+|||..+ +.+.|.+
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDkI--KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDKI--KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHHh--hcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 444689999999999999999999985 5566655 22221 35799999999999999999999755 5688999
Q ss_pred EecCCCCC
Q 011718 353 ALARPQTN 360 (479)
Q Consensus 353 ~~a~~~~~ 360 (479)
.|+.....
T Consensus 517 df~~~del 524 (718)
T KOG2416|consen 517 DFVRADEL 524 (718)
T ss_pred eecchhHH
Confidence 99876543
No 186
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.21 Score=47.88 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=17.3
Q ss_pred HHHHHHHhhCCceeEEEeeeCCCCCCCCcceEEEEeCChhHHH
Q 011718 199 EFRKVIEDVGPGVDTIELIKDPQAPSRNRGFAFVLYYNNACAD 241 (479)
Q Consensus 199 ~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~afv~f~~~~~a~ 241 (479)
.|-.+|..||+ |. ..|-.|.|.+.+.+.
T Consensus 246 ~lG~I~EiFGp-V~--------------~P~YvvRFnS~~e~~ 273 (483)
T KOG2236|consen 246 ALGQIFEIFGP-VK--------------NPYYVVRFNSEEEIS 273 (483)
T ss_pred cchhhhhhhcc-cC--------------CceEEEecCchhhhh
Confidence 45567777886 21 236677777666554
No 187
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=96.44 E-value=0.039 Score=50.36 Aligned_cols=11 Identities=18% Similarity=0.151 Sum_probs=4.8
Q ss_pred ccCCCCCcCHH
Q 011718 188 IGNVPKSWTEK 198 (479)
Q Consensus 188 v~nl~~~~~~~ 198 (479)
+...|.+++.-
T Consensus 154 ~~k~p~Nin~~ 164 (465)
T KOG3973|consen 154 FPKQPGNINEW 164 (465)
T ss_pred CCCCCCCchHH
Confidence 33444444443
No 188
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.30 E-value=0.0015 Score=66.68 Aligned_cols=81 Identities=16% Similarity=0.270 Sum_probs=69.0
Q ss_pred hhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC-CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK-RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 277 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
...+.+||++||+..+++.+|+..|..||.|..|.|..-.-+. ..|+||.|.+...+-.|...+.+..|..-.+++.+.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 3446899999999999999999999999999999998775544 679999999999999999999888777666666666
Q ss_pred CC
Q 011718 356 RP 357 (479)
Q Consensus 356 ~~ 357 (479)
.+
T Consensus 449 ~~ 450 (975)
T KOG0112|consen 449 QP 450 (975)
T ss_pred cc
Confidence 54
No 189
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.03 E-value=0.0059 Score=52.10 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=46.5
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcc-cCce---eEEEEeecCC-C-CCceeEEEEEecCHHHHHHHHHHhcCCCCCCC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEP-IGEV---FEVGLVKDKD-S-GESKGFAFVAFRSKEVAKRAIDELCSKDFKGK 173 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~-~G~i---~~v~i~~~~~-~-g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~ 173 (479)
....|.|++||+.+|++++.+.++. ++.. ..+.-..... . .....-|||.|.+.+++...+..++|..|.+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 4568999999999999999998877 6654 3333122211 1 12234699999999999999999998776544
No 190
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.01 E-value=0.034 Score=37.81 Aligned_cols=54 Identities=11% Similarity=0.169 Sum_probs=44.1
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcC---CCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhc
Q 011718 281 KALYVKNLPENTTTKQLKELFQRH---GEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDT 340 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~---G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~ 340 (479)
..|+|.++. .++.++|+.+|..| ....+|.-+.+. -|=|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHHcC
Confidence 579999986 58889999999998 134566666665 5899999999999999864
No 191
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=95.90 E-value=0.029 Score=58.40 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=24.2
Q ss_pred CceeEEEEEecCHHHHHHHHHHhcCCCCC
Q 011718 143 ESKGFAFVAFRSKEVAKRAIDELCSKDFK 171 (479)
Q Consensus 143 ~~~g~afV~F~~~e~a~~Al~~l~~~~~~ 171 (479)
.-+||-||+=....+++.||+-+-+....
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhheec
Confidence 46899999999999999999877665444
No 192
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.86 E-value=0.46 Score=46.64 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=58.7
Q ss_pred cceEEecCCCCCCCHHHHHHHHhc--CCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCC--ceecCeEEEEEec
Q 011718 280 VKALYVKNLPENTTTKQLKELFQR--HGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEK--YEIDGQVLEVALA 355 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~--~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~--~~~~g~~i~v~~a 355 (479)
.+.|.|+-||..+-.++|+.||+. |-.+++|.+-.+. -.||+|++..||+.|.+.|.. ++|-|+.|..++.
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-----nWyITfesd~DAQqAykylreevk~fqgKpImARIK 249 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-----NWYITFESDTDAQQAYKYLREEVKTFQGKPIMARIK 249 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-----ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhhh
Confidence 467889999999999999999975 7788888886655 379999999999999998873 4688887766553
No 193
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.73 E-value=0.0072 Score=57.46 Aligned_cols=76 Identities=14% Similarity=0.244 Sum_probs=63.7
Q ss_pred ccceEEecCCCCCC-CHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCC
Q 011718 279 QVKALYVKNLPENT-TTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARP 357 (479)
Q Consensus 279 ~~~~l~v~nl~~~~-~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~ 357 (479)
..+.|-+.-+|+.. |.++|...|.+||.|..|.+.... -.|.|+|.+..+|-.|.. .++..|+++.|+|.|.++
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~----~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS----LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch----hhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 34566677777766 668999999999999999987764 369999999999988886 689999999999999988
Q ss_pred CC
Q 011718 358 QT 359 (479)
Q Consensus 358 ~~ 359 (479)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 43
No 194
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.63 E-value=0.055 Score=36.79 Aligned_cols=52 Identities=29% Similarity=0.493 Sum_probs=41.6
Q ss_pred eEEECCCCCCCCHHHHHHhhccc----CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHh
Q 011718 105 EVFIGGLPKDASEEDLRDLCEPI----GEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165 (479)
Q Consensus 105 ~l~V~nLp~~~te~~l~~~f~~~----G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l 165 (479)
.|+|+++. +++.++|+.+|..| + ...|.-+-|. .|=|.|.+.+.|.+||.+|
T Consensus 7 avhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 69999995 47888999999988 4 4456665553 4889999999999999754
No 195
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.42 E-value=0.076 Score=42.24 Aligned_cols=74 Identities=22% Similarity=0.270 Sum_probs=55.4
Q ss_pred CCCCCCeEEECCCCCCC----CHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCe
Q 011718 99 LPPHGSEVFIGGLPKDA----SEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKT 174 (479)
Q Consensus 99 ~~~~~~~l~V~nLp~~~----te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~ 174 (479)
..++-.||.|+=|...+ +...|...++.||+|.+|.++- +-.|.|.|.+..+|-+|+.+++. ...|..
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 34566788887776654 2333556679999999998863 33699999999999999998765 667777
Q ss_pred eeeecc
Q 011718 175 IRCSMS 180 (479)
Q Consensus 175 l~v~~a 180 (479)
+.+.|-
T Consensus 154 ~qCsWq 159 (166)
T PF15023_consen 154 FQCSWQ 159 (166)
T ss_pred EEeecc
Confidence 777664
No 196
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.23 E-value=0.19 Score=38.99 Aligned_cols=75 Identities=11% Similarity=0.079 Sum_probs=56.6
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCC-CEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecC---eEEEEEec
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHG-EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDG---QVLEVALA 355 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g---~~i~v~~a 355 (479)
..+.+...|+.++.+.|..+.+.+- .|..++|+++....+-.+.+.|.+.++|..-...+||+.++. ..++|-|-
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ChvvfV 92 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVFV 92 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEEE
Confidence 3455555666667777876666654 677899998877667789999999999999999999988775 34555444
No 197
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.19 E-value=0.087 Score=37.87 Aligned_cols=54 Identities=30% Similarity=0.494 Sum_probs=40.0
Q ss_pred eEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhc
Q 011718 105 EVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC 166 (479)
Q Consensus 105 ~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~ 166 (479)
.||--..|......||.++|+.||.|.--.| -+ ..|||...+.+.|..|+..+.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~VsWi-~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIYVSWI-ND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEEEEEE-CT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEEEEEE-cC-------CcEEEEeecHHHHHHHHHHhc
Confidence 3555559999999999999999998854444 32 369999999999999998775
No 198
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.00 E-value=0.084 Score=42.00 Aligned_cols=72 Identities=15% Similarity=0.236 Sum_probs=53.9
Q ss_pred cceEEecCCCCCC----CHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 280 VKALYVKNLPENT----TTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 280 ~~~l~v~nl~~~~----~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
-.+|.|+=|..++ +...|...++.||.|.+|.+.-. ..|.|.|.+..+|-+|+.+++. ..-|..+.++|-
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-----qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-----QSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-----ceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 3577776555544 33445556788999999987532 4799999999999999999876 566788888875
Q ss_pred CC
Q 011718 356 RP 357 (479)
Q Consensus 356 ~~ 357 (479)
.+
T Consensus 160 qr 161 (166)
T PF15023_consen 160 QR 161 (166)
T ss_pred cc
Confidence 43
No 199
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.00 E-value=0.084 Score=45.22 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=46.1
Q ss_pred CHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcC--CceecCeEEEEEecCCCC
Q 011718 293 TTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTE--KYEIDGQVLEVALARPQT 359 (479)
Q Consensus 293 ~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~--~~~~~g~~i~v~~a~~~~ 359 (479)
....|+.+|..|+.+..+...+.- +-..|.|.+.++|.+|...|+ +..+.|..|+|-|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF----rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF----RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT----TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC----CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 347899999999977777666544 358999999999999999999 899999999999995543
No 200
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.86 E-value=0.29 Score=37.97 Aligned_cols=66 Identities=17% Similarity=0.290 Sum_probs=48.9
Q ss_pred eEEECCCCCCCCHHHHHHhhcccC-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCC
Q 011718 105 EVFIGGLPKDASEEDLRDLCEPIG-EVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKG 172 (479)
Q Consensus 105 ~l~V~nLp~~~te~~l~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g 172 (479)
.+.+...|+.++-++|..+.+.+- .|..++|+++.. .++=.+.+.|.+.+.|+.....+||+.++.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 445555555566677776666654 577888888732 356679999999999999999999987754
No 201
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.80 E-value=0.013 Score=53.65 Aligned_cols=82 Identities=22% Similarity=0.379 Sum_probs=62.5
Q ss_pred CCCeEEECCCCCCCCHHHHH---HhhcccCceeEEEEeecCC--CC-CceeEEEEEecCHHHHHHHHHHhcCCCCCCCee
Q 011718 102 HGSEVFIGGLPKDASEEDLR---DLCEPIGEVFEVGLVKDKD--SG-ESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~---~~f~~~G~i~~v~i~~~~~--~g-~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l 175 (479)
...-+||-+|+..+..+.+. ++|.+||.|..|.+.++.. ++ ...-.+||+|...++|..||...++..+.|+.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 34567899999886555443 5899999999998887652 11 112248999999999999999999999999998
Q ss_pred eeeccCCC
Q 011718 176 RCSMSETN 183 (479)
Q Consensus 176 ~v~~a~~~ 183 (479)
+..+...+
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 77666543
No 202
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.77 E-value=0.01 Score=54.38 Aligned_cols=79 Identities=25% Similarity=0.434 Sum_probs=63.6
Q ss_pred ceEEecCCCCCCCHHHH---HHHHhcCCCEEEEEccCCCC--CC---CceEEEEeCChHHHHHHHHhcCCceecCeEEEE
Q 011718 281 KALYVKNLPENTTTKQL---KELFQRHGEVTKVVTPPGKS--GK---RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEV 352 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l---~~~f~~~G~v~~v~~~~~~~--~~---~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v 352 (479)
+-+||-+|+..+..+.+ ...|.+||.|.+|.+..+.. .. ..-++|+|...++|..||...++..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 56788889887755544 34689999999999988662 11 345899999999999999999999999999888
Q ss_pred EecCCCC
Q 011718 353 ALARPQT 359 (479)
Q Consensus 353 ~~a~~~~ 359 (479)
.+...+-
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 8887653
No 203
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=94.75 E-value=0.027 Score=60.36 Aligned_cols=6 Identities=17% Similarity=0.351 Sum_probs=2.9
Q ss_pred HHHhhc
Q 011718 120 LRDLCE 125 (479)
Q Consensus 120 l~~~f~ 125 (479)
|.++|+
T Consensus 741 La~~Fk 746 (784)
T PF04931_consen 741 LAAIFK 746 (784)
T ss_pred HHHHHH
Confidence 444554
No 204
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.69 E-value=0.16 Score=45.79 Aligned_cols=77 Identities=30% Similarity=0.436 Sum_probs=59.0
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCe-EEEEEecCCCC
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQ-VLEVALARPQT 359 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~-~i~v~~a~~~~ 359 (479)
.=|.|-++|..- -..|..+|++||.|++...... + .+-+|.|.+.-+|++||.+ +++.|+|- .|=|..+..+.
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~n--g--NwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSN--G--NWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecCCC--C--ceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCHH
Confidence 346677777643 3567889999999999887733 2 6899999999999999984 99999884 56777777766
Q ss_pred CCCC
Q 011718 360 NKRT 363 (479)
Q Consensus 360 ~~~~ 363 (479)
....
T Consensus 272 vi~~ 275 (350)
T KOG4285|consen 272 VING 275 (350)
T ss_pred Hhcc
Confidence 5443
No 205
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.57 E-value=0.019 Score=54.73 Aligned_cols=76 Identities=16% Similarity=0.151 Sum_probs=62.4
Q ss_pred CCCeEEECCCCCCC-CHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 102 HGSEVFIGGLPKDA-SEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 102 ~~~~l~V~nLp~~~-te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
..+.|-|.-.|+.+ |..+|..+|.+||.|..|.+-.. .-.|.|+|.+..+|-.|.. .++..|+++.|+|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 56677777777764 77889999999999999987433 3469999999999988874 5899999999999998
Q ss_pred CCCc
Q 011718 181 ETNN 184 (479)
Q Consensus 181 ~~~~ 184 (479)
++..
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 7654
No 206
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.56 E-value=0.088 Score=44.96 Aligned_cols=78 Identities=12% Similarity=0.033 Sum_probs=50.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHhc-CCCE---EEEE--ccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceecC----
Q 011718 280 VKALYVKNLPENTTTKQLKELFQR-HGEV---TKVV--TPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEIDG---- 347 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~-~G~v---~~v~--~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~g---- 347 (479)
..+|.|++||+.+|++++.+.++. ++.. ..+. ........ -.-|||.|.+.+++..-+..++|+.|-+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 468999999999999999986666 5544 2332 21111111 3469999999999999999999976643
Q ss_pred -eEEEEEecCC
Q 011718 348 -QVLEVALARP 357 (479)
Q Consensus 348 -~~i~v~~a~~ 357 (479)
....|.+|--
T Consensus 87 ~~~~~VE~Apy 97 (176)
T PF03467_consen 87 EYPAVVEFAPY 97 (176)
T ss_dssp EEEEEEEE-SS
T ss_pred CcceeEEEcch
Confidence 3566777654
No 207
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.02 E-value=0.18 Score=49.31 Aligned_cols=99 Identities=8% Similarity=0.122 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhcCCCCCCCeeeeeccCCCceeeccCCCCCcCHHHHHHHHHhh-CCceeEEEeeeCCCCCCCCcceEEEE
Q 011718 155 KEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIEDV-GPGVDTIELIKDPQAPSRNRGFAFVL 233 (479)
Q Consensus 155 ~e~a~~Al~~l~~~~~~g~~l~v~~a~~~~~l~v~nl~~~~~~~~l~~~f~~~-g~~i~~~~~~~~~~~~~~~~g~afv~ 233 (479)
.+-...+|...-+..+..+-++|.....++.|+|+-||..+-.+.++.+|+.- .+.+.+|..-.+ .-.||+
T Consensus 147 vdLI~Evlresp~VqvDekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--------~nWyIT 218 (684)
T KOG2591|consen 147 VDLIVEVLRESPNVQVDEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--------DNWYIT 218 (684)
T ss_pred hHHHHHHHhcCCCceeccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--------CceEEE
Confidence 33445566665666788899999999999999999999999999999999862 233666665543 347999
Q ss_pred eCChhHHHHHHHHhhcCccccCCCCcee
Q 011718 234 YYNNACADYSRQKMTSANFKLDGNTPTV 261 (479)
Q Consensus 234 f~~~~~a~~a~~~~~~~~~~~~~~~~~v 261 (479)
|.+..+|..|.+.|......+.++.|..
T Consensus 219 fesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 219 FESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 9999999999999886555566665543
No 208
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=93.80 E-value=0.094 Score=56.44 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=10.1
Q ss_pred CHHHHHHhhcccC
Q 011718 116 SEEDLRDLCEPIG 128 (479)
Q Consensus 116 te~~l~~~f~~~G 128 (479)
|-++|.+++..+-
T Consensus 427 s~eel~~lL~~~~ 439 (840)
T PF04147_consen 427 SHEELLELLDGYS 439 (840)
T ss_pred CHHHHHHHHhcCC
Confidence 6688999888764
No 209
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.32 E-value=0.53 Score=33.68 Aligned_cols=59 Identities=17% Similarity=0.298 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHhcCC-----CEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 290 ENTTTKQLKELFQRHG-----EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 290 ~~~~~~~l~~~f~~~G-----~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
..++..+|..++...+ .|-.|.|.. .|+||+-.. +.|..++..|++..+.|+.|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4667788888887654 566888866 578998854 5789999999999999999999875
No 210
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.11 E-value=0.29 Score=46.78 Aligned_cols=71 Identities=18% Similarity=0.364 Sum_probs=59.7
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccC-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCC
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIG-EVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKG 172 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g 172 (479)
+..++.|+|-.+|..+|-.||..|+..|- .|..++|+++.. .++=.++|.|++.++|......+||+.|+.
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 33488999999999999999999987654 689999999632 345568999999999999999999998764
No 211
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.02 E-value=2.9 Score=37.93 Aligned_cols=159 Identities=13% Similarity=0.222 Sum_probs=100.2
Q ss_pred CceeeccCCCCCcCHHHHHHHHHhhCCceeEEEeeeCCC------CCCCCcceEEEEeCChhHHHH----HHHHhhcCcc
Q 011718 183 NNRLFIGNVPKSWTEKEFRKVIEDVGPGVDTIELIKDPQ------APSRNRGFAFVLYYNNACADY----SRQKMTSANF 252 (479)
Q Consensus 183 ~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~------~~~~~~g~afv~f~~~~~a~~----a~~~~~~~~~ 252 (479)
.+.|.+.|+...++-..+...|-+||+ |+.|.++.+.. ..-+...-..+.|-+.+.+.. .++.+..-..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~p-IESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGP-IESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCc-eeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999999999999999 99999988631 112234557788888887754 4555665555
Q ss_pred ccCCCCceeeecCCCC---------CCCc----------hhhhhhccceEEecCCCCCC-CHHHHHHHH---hcCC----
Q 011718 253 KLDGNTPTVSWAEPKS---------TPDH----------SAAAASQVKALYVKNLPENT-TTKQLKELF---QRHG---- 305 (479)
Q Consensus 253 ~~~~~~~~v~~~~~~~---------~~~~----------~~~~~~~~~~l~v~nl~~~~-~~~~l~~~f---~~~G---- 305 (479)
.+....+.+.+..-.- .... .......++.|.|.=- ..+ +++-|.+.+ ..-+
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~RY 172 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKRY 172 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCceE
Confidence 6777777777654210 0000 0001112455666533 233 333333322 2212
Q ss_pred CEEEEEccCCCCCC----CceEEEEeCChHHHHHHHHhcCCc
Q 011718 306 EVTKVVTPPGKSGK----RDFGFIHYAERSSALKAIKDTEKY 343 (479)
Q Consensus 306 ~v~~v~~~~~~~~~----~g~~fV~f~~~~~a~~a~~~~~~~ 343 (479)
.|.+|.|+...... +.||.++|-+...|...+..+..+
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 46677777654422 689999999999999999887743
No 212
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=92.92 E-value=1.5 Score=45.80 Aligned_cols=63 Identities=6% Similarity=0.147 Sum_probs=46.3
Q ss_pred CCCCCHHHHHHHHhcCCCE-----EEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 289 PENTTTKQLKELFQRHGEV-----TKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 289 ~~~~~~~~l~~~f~~~G~v-----~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
-..++...|-.++..-+.| -.|.|.. .|.||+-. ...|...+..|++..+.|+.|.|..+...
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~------~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLFA------SHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQLLGDA 563 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEeC------CceEEEcC-hhhHHHHHHHhccccccCCceEEEECCCC
Confidence 3467777777777665543 3566654 57899884 45688889999999999999999988533
No 213
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=92.72 E-value=0.38 Score=34.68 Aligned_cols=55 Identities=16% Similarity=0.288 Sum_probs=40.0
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCC
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEK 342 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~ 342 (479)
...+|. .|..+-..+|.++|+.||.|.--=| .+ .-|||...+.+.|..|+..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~d-----TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-ND-----TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEE-CT-----TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-cC-----CcEEEEeecHHHHHHHHHHhcc
Confidence 345555 8999999999999999998763333 22 3699999999999999988763
No 214
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.44 E-value=0.28 Score=46.82 Aligned_cols=68 Identities=10% Similarity=0.162 Sum_probs=60.5
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCC-CEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecC
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHG-EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDG 347 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g 347 (479)
+..|+|-.+|..+|-.+|..|+..|- .|..|+|+++....+=.+.|.|.+.++|..-...+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 57899999999999999999998765 788999999776667779999999999999999999988875
No 215
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=92.37 E-value=0.13 Score=48.60 Aligned_cols=8 Identities=25% Similarity=0.418 Sum_probs=4.6
Q ss_pred CCHHHHHH
Q 011718 115 ASEEDLRD 122 (479)
Q Consensus 115 ~te~~l~~ 122 (479)
+|.++++.
T Consensus 190 LT~eDF~k 197 (324)
T PF05285_consen 190 LTPEDFAK 197 (324)
T ss_pred CCHHHHHH
Confidence 56666553
No 216
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.14 E-value=0.083 Score=52.82 Aligned_cols=72 Identities=19% Similarity=0.279 Sum_probs=63.4
Q ss_pred hhccceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEec
Q 011718 277 ASQVKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALA 355 (479)
Q Consensus 277 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a 355 (479)
.....++||+||...+..+-++.++..||.|..+.... |+|..|..+..+..|+..++...+++..+.+...
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 34457999999999999999999999999998876654 8999999999999999999999999988877664
No 217
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.11 E-value=0.22 Score=42.70 Aligned_cols=60 Identities=25% Similarity=0.305 Sum_probs=45.1
Q ss_pred CHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhc--CCCCCCCeeeeeccC
Q 011718 116 SEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELC--SKDFKGKTIRCSMSE 181 (479)
Q Consensus 116 te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~--~~~~~g~~l~v~~a~ 181 (479)
....|+++|..|+.+....+++. -+-..|.|.+.+.|.+|...|+ +..+.|..|+|.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 34779999999999888877754 3358999999999999999998 888999999998874
No 218
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.05 E-value=0.46 Score=42.94 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=53.8
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCee-eeeccC
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI-RCSMSE 181 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l-~v~~a~ 181 (479)
...|-|-++|+..+ .-|..+|++||.|++...- .+-.+-+|.|.+.-+|.+||.+ ++++|.|..+ -|..|.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecC
Confidence 56788888887644 3477899999999776542 3345899999999999999976 9998888644 444443
No 219
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.72 E-value=0.1 Score=53.58 Aligned_cols=70 Identities=27% Similarity=0.377 Sum_probs=58.4
Q ss_pred EEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCC--CCCeeeeeccC
Q 011718 106 VFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDF--KGKTIRCSMSE 181 (479)
Q Consensus 106 l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~--~g~~l~v~~a~ 181 (479)
..+.|.+...|-..|..+|++||.|.+++..++.+ .|.|.|.+.+.|..|+.+|+|+.+ .|-+.+|.+++
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 34455556667778899999999999999988765 799999999999999999999874 57778887776
No 220
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.47 E-value=0.13 Score=52.76 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=63.8
Q ss_pred eEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCce--ecCeEEEEEecCCCC
Q 011718 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYE--IDGQVLEVALARPQT 359 (479)
Q Consensus 282 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~--~~g~~i~v~~a~~~~ 359 (479)
+.++.|.+-..+-..|..+|++||.|.++...++- ..|.|.|.+.+.|..|+.+++|+. +.|-+.+|.+|+.-.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 34455666677888999999999999999988777 579999999999999999999975 458889999998765
Q ss_pred CC
Q 011718 360 NK 361 (479)
Q Consensus 360 ~~ 361 (479)
.-
T Consensus 376 ~~ 377 (1007)
T KOG4574|consen 376 MY 377 (1007)
T ss_pred cc
Confidence 43
No 221
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.37 E-value=1.1 Score=32.02 Aligned_cols=58 Identities=21% Similarity=0.401 Sum_probs=35.3
Q ss_pred CCCHHHHHHhhcccC-----ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeecc
Q 011718 114 DASEEDLRDLCEPIG-----EVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMS 180 (479)
Q Consensus 114 ~~te~~l~~~f~~~G-----~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a 180 (479)
.++..+|..++...+ .|-.|.|..+ |+||+-... .|..++..|++..+.|++|+|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 477888888876553 4667777543 789988776 688899999999999999999764
No 222
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=90.01 E-value=0.2 Score=50.24 Aligned_cols=71 Identities=21% Similarity=0.205 Sum_probs=62.1
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeec
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSM 179 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~ 179 (479)
.++..+|||+||...+..+-++.++..||-|.+++... |+|..|........|+..++...+.+..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34677899999999999999999999999988876643 899999999999999998888888888877765
No 223
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=89.67 E-value=2.2 Score=29.62 Aligned_cols=55 Identities=7% Similarity=0.158 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEE
Q 011718 291 NTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEV 352 (479)
Q Consensus 291 ~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v 352 (479)
.++-++|+..+.+|.- .+|. .++. | -||.|.+..+|.++....++..+....|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~--~d~t---G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIR--DDRT---G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEE--ecCC---E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5688999999999853 2333 3442 3 499999999999999999998887776654
No 224
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.66 E-value=8.9 Score=37.25 Aligned_cols=8 Identities=25% Similarity=0.546 Sum_probs=3.6
Q ss_pred EEECCCCC
Q 011718 106 VFIGGLPK 113 (479)
Q Consensus 106 l~V~nLp~ 113 (479)
+.+.-||.
T Consensus 187 ~ll~elPp 194 (483)
T KOG2236|consen 187 HLLDELPP 194 (483)
T ss_pred hhhhcCCC
Confidence 34444544
No 225
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.11 E-value=0.9 Score=42.71 Aligned_cols=55 Identities=25% Similarity=0.294 Sum_probs=43.8
Q ss_pred CCeEEECCCCCCCCHHHHHHhhcccCc-eeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHH
Q 011718 103 GSEVFIGGLPKDASEEDLRDLCEPIGE-VFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164 (479)
Q Consensus 103 ~~~l~V~nLp~~~te~~l~~~f~~~G~-i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~ 164 (479)
...|-|.++|.....++|..+|..|+. =..|+.+-+. .||-.|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 447899999999888899999998873 3455555443 599999999999999953
No 226
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=88.20 E-value=0.37 Score=50.61 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=11.2
Q ss_pred CCCCCCHHHHHHHHhc
Q 011718 288 LPENTTTKQLKELFQR 303 (479)
Q Consensus 288 l~~~~~~~~l~~~f~~ 303 (479)
.|..+...+|+.+|+.
T Consensus 447 ~pl~~~~~eLrKyF~~ 462 (1024)
T KOG1999|consen 447 GPLEVPASELRKYFEP 462 (1024)
T ss_pred CccccchHhhhhhccC
Confidence 4566677788888854
No 227
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=86.62 E-value=0.65 Score=34.24 Aligned_cols=57 Identities=18% Similarity=0.368 Sum_probs=41.0
Q ss_pred EEEEecCHHHHHHHHHHhcC-CCCCCCeeee---------------eccCCCceeeccCCCCCcCHHHHHHHH
Q 011718 148 AFVAFRSKEVAKRAIDELCS-KDFKGKTIRC---------------SMSETNNRLFIGNVPKSWTEKEFRKVI 204 (479)
Q Consensus 148 afV~F~~~e~a~~Al~~l~~-~~~~g~~l~v---------------~~a~~~~~l~v~nl~~~~~~~~l~~~f 204 (479)
|+|+|....-|++.++.-.- ..+.+.++.| ....++++|.|.+||...+++.|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 68999999999999964211 1244444444 334467899999999999999887653
No 228
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=85.27 E-value=0.83 Score=46.91 Aligned_cols=18 Identities=28% Similarity=0.198 Sum_probs=8.5
Q ss_pred EECCCCCCCCHHHHHHhh
Q 011718 107 FIGGLPKDASEEDLRDLC 124 (479)
Q Consensus 107 ~V~nLp~~~te~~l~~~f 124 (479)
-++.+|--++.++-..++
T Consensus 959 ~~~d~pvFAsaeey~hll 976 (988)
T KOG2038|consen 959 GLNDSPVFASAEEYAHLL 976 (988)
T ss_pred ccccchhhhhHHHHHHHh
Confidence 345555444444444443
No 229
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=84.86 E-value=2.5 Score=39.93 Aligned_cols=40 Identities=13% Similarity=0.196 Sum_probs=32.3
Q ss_pred CCCCCeEEECCCCCC-CCHHHHHHhhccc----CceeEEEEeecC
Q 011718 100 PPHGSEVFIGGLPKD-ASEEDLRDLCEPI----GEVFEVGLVKDK 139 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~-~te~~l~~~f~~~----G~i~~v~i~~~~ 139 (479)
..+..+|-|-||.|+ +...+|..+|+.| |.|..|.|++..
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypse 187 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSE 187 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhh
Confidence 456778999999997 8888999888766 578889987754
No 230
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=84.36 E-value=1.1 Score=37.54 Aligned_cols=77 Identities=16% Similarity=0.184 Sum_probs=57.0
Q ss_pred ceEEecCCCCCCCH-----HHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCe-EEEEEe
Q 011718 281 KALYVKNLPENTTT-----KQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQ-VLEVAL 354 (479)
Q Consensus 281 ~~l~v~nl~~~~~~-----~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~-~i~v~~ 354 (479)
..+.+.+|+..+.. .....+|.+|-...-..+.+.. ++.-|-|.+.+.|..|..+++...|.|+ .|++-+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf----rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF----RRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh----ceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 45777777765522 3345566766666555555544 5678889999999999999999999998 999999
Q ss_pred cCCCCCC
Q 011718 355 ARPQTNK 361 (479)
Q Consensus 355 a~~~~~~ 361 (479)
+.+....
T Consensus 87 aQ~~~~~ 93 (193)
T KOG4019|consen 87 AQPGHPE 93 (193)
T ss_pred ccCCCcc
Confidence 9876543
No 231
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.00 E-value=3.8 Score=40.81 Aligned_cols=75 Identities=20% Similarity=0.334 Sum_probs=57.6
Q ss_pred cceEEecCCCCC-CCHHHHHHHHhcC----CCEEEEEccCCCCC------------------------------------
Q 011718 280 VKALYVKNLPEN-TTTKQLKELFQRH----GEVTKVVTPPGKSG------------------------------------ 318 (479)
Q Consensus 280 ~~~l~v~nl~~~-~~~~~l~~~f~~~----G~v~~v~~~~~~~~------------------------------------ 318 (479)
+++|-|.||.|. +...+|.-+|+.| |.|.+|.|....-|
T Consensus 174 T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~~ 253 (650)
T KOG2318|consen 174 TKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEEDV 253 (650)
T ss_pred cceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhhH
Confidence 689999999995 4778999999876 58888876432111
Q ss_pred -----------C-C-ceEEEEeCChHHHHHHHHhcCCceecCe--EEEEEe
Q 011718 319 -----------K-R-DFGFIHYAERSSALKAIKDTEKYEIDGQ--VLEVAL 354 (479)
Q Consensus 319 -----------~-~-g~~fV~f~~~~~a~~a~~~~~~~~~~g~--~i~v~~ 354 (479)
+ + =||.|+|.+.+.|......++|..+... .|.++|
T Consensus 254 ~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 254 DREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred HHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1 1 2799999999999999999999988764 444444
No 232
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=83.49 E-value=4.9 Score=27.89 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=41.8
Q ss_pred CCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeee
Q 011718 114 DASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRC 177 (479)
Q Consensus 114 ~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v 177 (479)
.++-.+|+..+..|. ... |..++ .| =||.|.+..+|++|....++..+....|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~--I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDR--IRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cce--EEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 467889999999996 233 33332 23 489999999999999999988877766643
No 233
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=83.30 E-value=0.67 Score=43.94 Aligned_cols=7 Identities=0% Similarity=0.055 Sum_probs=2.6
Q ss_pred cCHHHHH
Q 011718 195 WTEKEFR 201 (479)
Q Consensus 195 ~~~~~l~ 201 (479)
++..+|.
T Consensus 231 v~~~dIe 237 (324)
T PF05285_consen 231 VDPSDIE 237 (324)
T ss_pred CCHHHHH
Confidence 3333333
No 234
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=82.78 E-value=0.43 Score=46.63 Aligned_cols=8 Identities=38% Similarity=0.721 Sum_probs=3.6
Q ss_pred CCHHHHHH
Q 011718 115 ASEEDLRD 122 (479)
Q Consensus 115 ~te~~l~~ 122 (479)
++.+.|++
T Consensus 549 ~~r~~ik~ 556 (615)
T KOG0526|consen 549 ASRESIKE 556 (615)
T ss_pred hhhhhHhh
Confidence 34444443
No 235
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=82.65 E-value=1.1 Score=45.69 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=12.5
Q ss_pred EEEEeCChHHHHHHHHhcCCceecC
Q 011718 323 GFIHYAERSSALKAIKDTEKYEIDG 347 (479)
Q Consensus 323 ~fV~f~~~~~a~~a~~~~~~~~~~g 347 (479)
-||.-.+.++-..|.+.+-...+.|
T Consensus 624 IFcsImsaeDyiDAFEklLkL~LK~ 648 (822)
T KOG2141|consen 624 IFCSIMSAEDYIDAFEKLLKLSLKG 648 (822)
T ss_pred heeeeecchHHHHHHHHHHhccCCC
Confidence 3555555555555555544444444
No 236
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=82.11 E-value=6.9 Score=30.02 Aligned_cols=107 Identities=21% Similarity=0.279 Sum_probs=64.7
Q ss_pred CCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCC--CCCCeeeeeccCCCceee
Q 011718 110 GLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKD--FKGKTIRCSMSETNNRLF 187 (479)
Q Consensus 110 nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~--~~g~~l~v~~a~~~~~l~ 187 (479)
=||+-+. .|.++|+.-|+|.+|..+..- . -..|+-.++|.. +.|+ |+|........++
T Consensus 10 VlPPYTn--KLSDYfeSPGKI~svItvtqy-------------p----dndal~~~~G~lE~vDg~-i~IGs~q~~~sV~ 69 (145)
T TIGR02542 10 VLPPYTN--KLSDYFESPGKIQSVITVTQY-------------P----DNDALLYVHGTLEQVDGN-IRIGSGQTPASVR 69 (145)
T ss_pred ecCCccc--hhhHHhcCCCceEEEEEEecc-------------C----CchhhheeeeehhhccCc-EEEccCCCcccEE
Confidence 3676654 489999999999998765431 1 123333455543 3444 6666666555666
Q ss_pred ccC---------CCCCcCHHHHHHHHHhhCC--ceeEEEeeeCCCCCCCCcceEEEEeCCh
Q 011718 188 IGN---------VPKSWTEKEFRKVIEDVGP--GVDTIELIKDPQAPSRNRGFAFVLYYNN 237 (479)
Q Consensus 188 v~n---------l~~~~~~~~l~~~f~~~g~--~i~~~~~~~~~~~~~~~~g~afv~f~~~ 237 (479)
|.+ -|...|..+++++|+.--. .|..-.+.+| ..+.-+-..||..|...
T Consensus 70 i~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rd-GLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 70 IQGTPSGNNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRD-GLPEGSYRICFRLFNAT 129 (145)
T ss_pred EecCCCCCceecCceeeeHHHHHHHHhhhhhhccccHHHHhhc-CCCCCceEEEEEEeccc
Confidence 544 3456899999999986311 1444445555 23344456688877654
No 237
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=81.83 E-value=0.94 Score=47.12 Aligned_cols=13 Identities=8% Similarity=0.092 Sum_probs=6.4
Q ss_pred ChhHHHHHHHHhh
Q 011718 236 NNACADYSRQKMT 248 (479)
Q Consensus 236 ~~~~a~~a~~~~~ 248 (479)
+..++..|+.++-
T Consensus 400 SA~D~v~al~ALL 412 (622)
T PF02724_consen 400 SASDVVYALTALL 412 (622)
T ss_pred eHHHHHHHHHHHh
Confidence 3445555555543
No 238
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=81.60 E-value=1.4 Score=44.95 Aligned_cols=13 Identities=31% Similarity=0.363 Sum_probs=6.6
Q ss_pred CCCCCCHHHHHHH
Q 011718 288 LPENTTTKQLKEL 300 (479)
Q Consensus 288 l~~~~~~~~l~~~ 300 (479)
+|-.+|.++|..+
T Consensus 552 ~~l~vTledll~a 564 (822)
T KOG2141|consen 552 LPLSVTLEDLLHA 564 (822)
T ss_pred ccccccHHHhhCh
Confidence 3444555555544
No 239
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=78.57 E-value=1.9 Score=42.21 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=8.8
Q ss_pred EEEEecCHHHHHHHHHH
Q 011718 148 AFVAFRSKEVAKRAIDE 164 (479)
Q Consensus 148 afV~F~~~e~a~~Al~~ 164 (479)
-.=.|...+.|-+..+.
T Consensus 212 ~HDrF~e~eQaPKSr~e 228 (694)
T KOG4264|consen 212 KHDRFDEKEQAPKSRKE 228 (694)
T ss_pred ccccchhhhcCchHHHH
Confidence 33456666655554443
No 240
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=76.23 E-value=1.7 Score=42.74 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=12.9
Q ss_pred EEECCCCCCCCHHHHHHhh
Q 011718 106 VFIGGLPKDASEEDLRDLC 124 (479)
Q Consensus 106 l~V~nLp~~~te~~l~~~f 124 (479)
-.|..||--++.++-..++
T Consensus 801 ~~lk~lpvfa~ad~ya~~l 819 (821)
T COG5593 801 NMLKSLPVFASADDYAQYL 819 (821)
T ss_pred HHHhcCCcccchHHHHHHh
Confidence 4567788777777665554
No 241
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=75.38 E-value=1.8 Score=31.90 Aligned_cols=71 Identities=11% Similarity=0.174 Sum_probs=42.3
Q ss_pred EEEEeCChhHHHHHHHHhhcCccccCCCCceeeecCCCCC--CCchhhhhhccceEEecCCCCCCCHHHHHHHH
Q 011718 230 AFVLYYNNACADYSRQKMTSANFKLDGNTPTVSWAEPKST--PDHSAAAASQVKALYVKNLPENTTTKQLKELF 301 (479)
Q Consensus 230 afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f 301 (479)
|+|+|....-|...++.-. ....+....+.|....-... ..-........++|.|.|||...+++.|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~-~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKK-HPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCE-EEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 5788988887776655432 24445555555443322111 11111122335789999999999999998754
No 242
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=75.25 E-value=3.8 Score=39.68 Aligned_cols=11 Identities=18% Similarity=0.558 Sum_probs=6.0
Q ss_pred CCCCCeeeeec
Q 011718 169 DFKGKTIRCSM 179 (479)
Q Consensus 169 ~~~g~~l~v~~ 179 (479)
.+.||+|.|..
T Consensus 425 SMrGRpItvAa 435 (620)
T COG4547 425 SMRGRPITVAA 435 (620)
T ss_pred CcCCcceehhH
Confidence 34566666543
No 243
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=73.21 E-value=2.2 Score=44.52 Aligned_cols=15 Identities=20% Similarity=0.144 Sum_probs=8.2
Q ss_pred eCChhHHHHHHHHhh
Q 011718 234 YYNNACADYSRQKMT 248 (479)
Q Consensus 234 f~~~~~a~~a~~~~~ 248 (479)
|...-+|..++.++.
T Consensus 395 y~~~lSA~D~v~al~ 409 (622)
T PF02724_consen 395 YRGKLSASDVVYALT 409 (622)
T ss_pred CCCceeHHHHHHHHH
Confidence 345555555555555
No 244
>COG4907 Predicted membrane protein [Function unknown]
Probab=72.26 E-value=3.5 Score=39.87 Aligned_cols=7 Identities=14% Similarity=0.477 Sum_probs=2.7
Q ss_pred HHHHHhc
Q 011718 297 LKELFQR 303 (479)
Q Consensus 297 l~~~f~~ 303 (479)
.+++++.
T Consensus 491 FKnfLsd 497 (595)
T COG4907 491 FKNFLSD 497 (595)
T ss_pred HHHHHHh
Confidence 3333333
No 245
>PHA03169 hypothetical protein; Provisional
Probab=72.23 E-value=29 Score=32.84 Aligned_cols=14 Identities=0% Similarity=0.306 Sum_probs=7.1
Q ss_pred ceEEEEeCChhHHH
Q 011718 228 GFAFVLYYNNACAD 241 (479)
Q Consensus 228 g~afv~f~~~~~a~ 241 (479)
.|++..|+......
T Consensus 366 ~y~ItVyCqsk~Ta 379 (413)
T PHA03169 366 AYCITVFCQSRGTA 379 (413)
T ss_pred eeEEEEEecCcccH
Confidence 46655565444333
No 246
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=72.19 E-value=1.9 Score=38.52 Aligned_cols=69 Identities=29% Similarity=0.485 Sum_probs=46.5
Q ss_pred CCCeEEECCCCCC------------CCHHHHHHhhcccCceeEEEEee-cC----CCCCc-----eeE---------EEE
Q 011718 102 HGSEVFIGGLPKD------------ASEEDLRDLCEPIGEVFEVGLVK-DK----DSGES-----KGF---------AFV 150 (479)
Q Consensus 102 ~~~~l~V~nLp~~------------~te~~l~~~f~~~G~i~~v~i~~-~~----~~g~~-----~g~---------afV 150 (479)
...||++.+||-. -+++-|+..|..||.|..|.|.. ++ -+++. +|| |||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3458999999843 26778999999999998877543 21 12333 233 457
Q ss_pred EecCHHHHHHHHHHhcCCCC
Q 011718 151 AFRSKEVAKRAIDELCSKDF 170 (479)
Q Consensus 151 ~F~~~e~a~~Al~~l~~~~~ 170 (479)
+|..-..-..|+..|.|..|
T Consensus 228 qfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHhHHHHHHHHhcchH
Confidence 77777777777777777654
No 247
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=72.15 E-value=4.8 Score=40.79 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=7.4
Q ss_pred CCeEEECCCCCCCC
Q 011718 103 GSEVFIGGLPKDAS 116 (479)
Q Consensus 103 ~~~l~V~nLp~~~t 116 (479)
..+||-.-....+.
T Consensus 295 ~Y~vfTt~fDe~i~ 308 (600)
T TIGR01651 295 DYKVFTTAFDETVD 308 (600)
T ss_pred cceecchhhhhhcc
Confidence 55566655554443
No 248
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=71.61 E-value=5.8 Score=36.09 Aligned_cols=147 Identities=12% Similarity=0.177 Sum_probs=88.7
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCC-------CCCceeEEEEEecCHHHHHHHH----HHhc--CC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKD-------SGESKGFAFVAFRSKEVAKRAI----DELC--SK 168 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~-------~g~~~g~afV~F~~~e~a~~Al----~~l~--~~ 168 (479)
..|.|.+.||..+++--.+...|.+||+|++|.++.+.. .........+.|-+.+.+.... +.|+ .+
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999998761 1234567899999998875443 2222 12
Q ss_pred CCCCCeeeeeccC--------------------------------CCceeeccCCCCCcCHHHHHHHHH---hhC---Cc
Q 011718 169 DFKGKTIRCSMSE--------------------------------TNNRLFIGNVPKSWTEKEFRKVIE---DVG---PG 210 (479)
Q Consensus 169 ~~~g~~l~v~~a~--------------------------------~~~~l~v~nl~~~~~~~~l~~~f~---~~g---~~ 210 (479)
.|.-..|.+.+.. ..+.|.|.=-..-.+++.+.+.+. .-+ -.
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhccCCCceEE
Confidence 3555555554432 112222222111112222222221 111 13
Q ss_pred eeEEEeeeCC-CCCCCCcceEEEEeCChhHHHHHHHHhh
Q 011718 211 VDTIELIKDP-QAPSRNRGFAFVLYYNNACADYSRQKMT 248 (479)
Q Consensus 211 i~~~~~~~~~-~~~~~~~g~afv~f~~~~~a~~a~~~~~ 248 (479)
++.|.++... ....-++.|+.+.|-+-..|...+..+.
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 5666665432 1223356788888888888877777765
No 249
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=71.60 E-value=0.79 Score=45.06 Aligned_cols=72 Identities=14% Similarity=0.221 Sum_probs=55.9
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGK 173 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~ 173 (479)
..|+|||+|+++.++-.+|..+|+.+--+..+.+.....-.....+.||+|+---..+-|+.+||+.-+...
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 467899999999999999999999886666665544433345567899999988888888888888766543
No 250
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.79 E-value=4.5 Score=39.11 Aligned_cols=9 Identities=22% Similarity=0.342 Sum_probs=3.9
Q ss_pred CCCCCHHHH
Q 011718 289 PENTTTKQL 297 (479)
Q Consensus 289 ~~~~~~~~l 297 (479)
|.-+.++++
T Consensus 390 peifDD~DF 398 (483)
T KOG2773|consen 390 PEIFDDSDF 398 (483)
T ss_pred ccccCcHHH
Confidence 444444433
No 251
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=70.11 E-value=9.2 Score=41.95 Aligned_cols=13 Identities=31% Similarity=0.365 Sum_probs=5.8
Q ss_pred CCCCCCCCHHHHH
Q 011718 109 GGLPKDASEEDLR 121 (479)
Q Consensus 109 ~nLp~~~te~~l~ 121 (479)
-.||.....-+|.
T Consensus 1447 ~~lp~~~~k~~ms 1459 (1640)
T KOG0262|consen 1447 LKLPLDKEKLDMS 1459 (1640)
T ss_pred EEecCCCcchHHH
Confidence 3455554443433
No 252
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=69.60 E-value=5 Score=38.86 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=4.6
Q ss_pred HHHHHHHhhC
Q 011718 199 EFRKVIEDVG 208 (479)
Q Consensus 199 ~l~~~f~~~g 208 (479)
-|...+..||
T Consensus 440 ilArtLeRcg 449 (620)
T COG4547 440 ILARTLERCG 449 (620)
T ss_pred HHHHHHHHcC
Confidence 3344444554
No 253
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=69.50 E-value=2.4 Score=33.34 Aligned_cols=50 Identities=16% Similarity=0.306 Sum_probs=27.5
Q ss_pred ceEEecCCCCC---------CCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChH
Q 011718 281 KALYVKNLPEN---------TTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERS 331 (479)
Q Consensus 281 ~~l~v~nl~~~---------~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~ 331 (479)
.++.|.|++.. .+.+.|++.|+.|..++ |+...+..+.+|++.|.|.+.-
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDW 67 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCCh
Confidence 35667777543 34588999999998765 4455555566799999998643
No 254
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=68.97 E-value=5.9 Score=33.16 Aligned_cols=56 Identities=25% Similarity=0.283 Sum_probs=40.0
Q ss_pred CeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCC--CceeEEEEEecCHHHHHHHHHH
Q 011718 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSG--ESKGFAFVAFRSKEVAKRAIDE 164 (479)
Q Consensus 104 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g--~~~g~afV~F~~~e~a~~Al~~ 164 (479)
+++|.. +.+...++|.++-+ |.+..|.+.+... + ..+|..||+|.+.+.|.++++.
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~-k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGN-KAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCC-CCCCCCCceEEEeecHHHHHhhhhh
Confidence 456666 44444455555555 7888888766544 3 5789999999999999998865
No 255
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=68.89 E-value=3.7 Score=40.79 Aligned_cols=6 Identities=67% Similarity=0.789 Sum_probs=3.0
Q ss_pred HHHHHH
Q 011718 157 VAKRAI 162 (479)
Q Consensus 157 ~a~~Al 162 (479)
-|.++|
T Consensus 322 rAR~~i 327 (432)
T PF09073_consen 322 RARRAI 327 (432)
T ss_pred HHHHHH
Confidence 355554
No 256
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=68.14 E-value=6.6 Score=27.48 Aligned_cols=63 Identities=14% Similarity=0.259 Sum_probs=46.9
Q ss_pred HHHHHhhcccC-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCCC
Q 011718 118 EDLRDLCEPIG-EVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN 183 (479)
Q Consensus 118 ~~l~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~~ 183 (479)
++|++-|...| +|..|.-+..+.++.....-||++....+.+.++ +=..|.+..|.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCCC
Confidence 46777887777 7888887777766777788999998887655554 335678888988877654
No 257
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=67.87 E-value=11 Score=35.84 Aligned_cols=56 Identities=29% Similarity=0.383 Sum_probs=45.4
Q ss_pred EEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCCCceeeccCCCCCcCHHHHHHHHH
Q 011718 148 AFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKVIE 205 (479)
Q Consensus 148 afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~~~~l~v~nl~~~~~~~~l~~~f~ 205 (479)
|||+|.+..+|..|++.+... ..+.++|..|.....|+=.||........++.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCCcccccccccCCChHHHHHHHHHH
Confidence 799999999999999864433 34677999999999999999988777777776544
No 258
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=67.61 E-value=13 Score=33.49 Aligned_cols=60 Identities=13% Similarity=0.250 Sum_probs=41.5
Q ss_pred CCCCCeEEECCCCCCCCHHHHHHhhcccCce-eEEEEeecCCCCCceeEEEEEecCH-------HHHHHHHHHh
Q 011718 100 PPHGSEVFIGGLPKDASEEDLRDLCEPIGEV-FEVGLVKDKDSGESKGFAFVAFRSK-------EVAKRAIDEL 165 (479)
Q Consensus 100 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i-~~v~i~~~~~~g~~~g~afV~F~~~-------e~a~~Al~~l 165 (479)
....+-|+|+|||-++.-.+|+..+.+.+-+ .++.. .-..|-||+.|-+. .++.+++..+
T Consensus 327 a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~~~~~~~~~~~~~~~s~ 394 (396)
T KOG4410|consen 327 AGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRKGVPSTQDDMDKVLKSL 394 (396)
T ss_pred CccccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCccCCCCCchHHHHHhccC
Confidence 3445669999999999999999988876632 23322 23467899999764 4455555443
No 259
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=66.10 E-value=32 Score=36.16 Aligned_cols=6 Identities=33% Similarity=0.683 Sum_probs=2.2
Q ss_pred EEecCH
Q 011718 150 VAFRSK 155 (479)
Q Consensus 150 V~F~~~ 155 (479)
+.|.+.
T Consensus 297 ~r~~~~ 302 (756)
T KOG2375|consen 297 VRFENE 302 (756)
T ss_pred hhhhhh
Confidence 333333
No 260
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=65.37 E-value=4.8 Score=43.94 Aligned_cols=14 Identities=14% Similarity=0.358 Sum_probs=7.1
Q ss_pred HHHHHHHhcCCCEE
Q 011718 295 KQLKELFQRHGEVT 308 (479)
Q Consensus 295 ~~l~~~f~~~G~v~ 308 (479)
.+|..+|..||.-+
T Consensus 1540 ~Ev~~VF~vYGIsV 1553 (1640)
T KOG0262|consen 1540 NEVNNVFKVYGISV 1553 (1640)
T ss_pred HHHHHhhhheeeee
Confidence 34555555555433
No 261
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=65.00 E-value=22 Score=26.09 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=40.9
Q ss_pred EEecCCCCCCCHHHHHHHHhc-CC-CEEEEEccCCCCCCCceEEEEeCChHHHHHHHHh
Q 011718 283 LYVKNLPENTTTKQLKELFQR-HG-EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339 (479)
Q Consensus 283 l~v~nl~~~~~~~~l~~~f~~-~G-~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~ 339 (479)
-|+--++...+..+|+..++. |+ .|.+|....-..+- .-|||+|..-..|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~-KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE-KKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc-EEEEEEeCCCCcHHHHHHh
Confidence 444555678899999999988 66 77777766555332 3599999988888877654
No 262
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=64.49 E-value=24 Score=25.34 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=41.0
Q ss_pred eEEecCCCCCCCHHHHHHHHhc-CC-CEEEEEccCCCCCCCceEEEEeCChHHHHHHHHh
Q 011718 282 ALYVKNLPENTTTKQLKELFQR-HG-EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339 (479)
Q Consensus 282 ~l~v~nl~~~~~~~~l~~~f~~-~G-~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~ 339 (479)
.-|+-.++...+..+|+..++. |+ .|.+|....-..+- .-|||++..-..|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~-KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGE-KKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc-eEEEEEECCCCcHHHHHHh
Confidence 3566667788999999999988 66 67777665544322 3599999888877776554
No 263
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=62.21 E-value=10 Score=34.20 Aligned_cols=47 Identities=19% Similarity=0.315 Sum_probs=34.5
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCCh
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAER 330 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~ 330 (479)
.-|+|+||+.++...+|+..+.+.+.+- +.....+..+-||++|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~p---m~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTP---MSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCc---eeEeeecCCcceeEecCCc
Confidence 5699999999999999999998866432 1112233346799999764
No 264
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=61.10 E-value=2.7 Score=42.53 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=5.8
Q ss_pred EEecCHHHHHHHHH
Q 011718 150 VAFRSKEVAKRAID 163 (479)
Q Consensus 150 V~F~~~e~a~~Al~ 163 (479)
+.+.+.+...+.+.
T Consensus 234 f~~sD~e~Idrli~ 247 (556)
T PF05918_consen 234 FDPSDPESIDRLIS 247 (556)
T ss_dssp --SSSHHHHHHHHH
T ss_pred CCCcCHHHHHHHHH
Confidence 34445555544443
No 265
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=61.02 E-value=2.7 Score=42.52 Aligned_cols=10 Identities=0% Similarity=0.229 Sum_probs=1.6
Q ss_pred EEEEecCCCC
Q 011718 350 LEVALARPQT 359 (479)
Q Consensus 350 i~v~~a~~~~ 359 (479)
|.++|.....
T Consensus 457 itlSWk~~~~ 466 (556)
T PF05918_consen 457 ITLSWKEAKK 466 (556)
T ss_dssp ---TTS----
T ss_pred cceeeeeccc
Confidence 5555544443
No 266
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=60.98 E-value=21 Score=29.40 Aligned_cols=43 Identities=23% Similarity=0.221 Sum_probs=32.0
Q ss_pred eEEecCCCCCC-CHHHHHHHHhcCCCEEEEEccCCCCCCCceEE
Q 011718 282 ALYVKNLPENT-TTKQLKELFQRHGEVTKVVTPPGKSGKRDFGF 324 (479)
Q Consensus 282 ~l~v~nl~~~~-~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~f 324 (479)
=|.|.|||... +++.|+.+.+.+|.+..+...........|+=
T Consensus 106 WVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~~~~~~~~R 149 (153)
T PF14111_consen 106 WVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLKRTRLDFAR 149 (153)
T ss_pred hhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCCcccccEEE
Confidence 36778999874 77889999999999999987765543333443
No 267
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.75 E-value=1.9 Score=41.20 Aligned_cols=77 Identities=6% Similarity=-0.136 Sum_probs=62.4
Q ss_pred CeEEECCCCCCCCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccC
Q 011718 104 SEVFIGGLPKDASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSE 181 (479)
Q Consensus 104 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~ 181 (479)
...|+..||...++.++.-+|..||.|..+.+.+..+.+...-.+||.-.+. .+..||..+.-+.+++..++|..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcCc
Confidence 3567889999999999999999999999988888777677788899887654 4677777666677888888887765
No 268
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=59.59 E-value=7.3 Score=39.55 Aligned_cols=8 Identities=13% Similarity=0.630 Sum_probs=3.5
Q ss_pred HHHHHHHh
Q 011718 295 KQLKELFQ 302 (479)
Q Consensus 295 ~~l~~~f~ 302 (479)
.+|+.+..
T Consensus 543 ~hLr~vi~ 550 (600)
T TIGR01651 543 RHLRAVIE 550 (600)
T ss_pred HHHHHHHH
Confidence 44444443
No 269
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=59.36 E-value=12 Score=25.98 Aligned_cols=63 Identities=14% Similarity=0.228 Sum_probs=46.4
Q ss_pred HHHHHhhcccC-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCeeeeeccCCC
Q 011718 118 EDLRDLCEPIG-EVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETN 183 (479)
Q Consensus 118 ~~l~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~~ 183 (479)
..|++-|...| ++..|.-+..+.+......-||+.....+.... |+=+.|.++++.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~I---l~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEI---LNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcce---EeehhhCCeeEEEecCccc
Confidence 35788888888 788888888877777777888888877655542 3445688889988876543
No 270
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=57.95 E-value=8.3 Score=41.86 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=8.6
Q ss_pred CccccccCCCCCCCCCCCCCC
Q 011718 431 GRIGYVLQQPGVQMPLPPPRP 451 (479)
Q Consensus 431 ~~~g~~~~~~~~~~~~p~~~~ 451 (479)
+++||-| |.+|||||||.-
T Consensus 14 pppg~ep--ps~pppPppPg~ 32 (2365)
T COG5178 14 PPPGFEP--PSQPPPPPPPGV 32 (2365)
T ss_pred cCCCCCC--CCCCCCccCCCc
Confidence 3344533 334555555543
No 271
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=57.82 E-value=3.1 Score=41.10 Aligned_cols=72 Identities=11% Similarity=0.133 Sum_probs=54.7
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceecCeEEE
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEIDGQVLE 351 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~ 351 (479)
.++|||.|++++++-.+|..+|+.+-.+.++.+.....-+ ..+.+|+|.---....|+.+||++.+....+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~s 304 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFLS 304 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccccc
Confidence 4789999999999999999999998777777766554333 45789999876666777777777666554433
No 272
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=57.22 E-value=34 Score=25.07 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=42.3
Q ss_pred EEECCCCCCCCHHHHHHhhcc-cC-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHh
Q 011718 106 VFIGGLPKDASEEDLRDLCEP-IG-EVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDEL 165 (479)
Q Consensus 106 l~V~nLp~~~te~~l~~~f~~-~G-~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l 165 (479)
-|+--.+..++..+|++.++. || .|.+|+.+..+ ....-|||.|.....|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHhh
Confidence 555567788999999998876 55 67777766654 23446999999999888876543
No 273
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=56.99 E-value=24 Score=23.97 Aligned_cols=21 Identities=19% Similarity=0.523 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCCEEEEEccCC
Q 011718 295 KQLKELFQRHGEVTKVVTPPG 315 (479)
Q Consensus 295 ~~l~~~f~~~G~v~~v~~~~~ 315 (479)
.+||++|+..|.|.-+.+..-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHhcCcEEEEEEccc
Confidence 689999999999987666443
No 274
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=56.79 E-value=37 Score=23.75 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=42.9
Q ss_pred HHHHHHHhcCC-CEEEEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 295 KQLKELFQRHG-EVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 295 ~~l~~~f~~~G-~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
++|.+-|...| .|..|.-+..+.++ -...||+++...+...+ ++=..|++..|+|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 46778888888 78888777776443 56788888776653333 3334788999999877654
No 275
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=56.60 E-value=13 Score=29.31 Aligned_cols=55 Identities=27% Similarity=0.348 Sum_probs=30.2
Q ss_pred eEEECCCCCC---------CCHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHH-HHHHH
Q 011718 105 EVFIGGLPKD---------ASEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEV-AKRAI 162 (479)
Q Consensus 105 ~l~V~nLp~~---------~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~-a~~Al 162 (479)
++.|-|++.. ++.+.|++.|+.|.++ +|+.+.+.. -.+|++.|.|.+.-. -..|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCChHHHHHHH
Confidence 4667777644 3567899999999876 466666643 568999999976543 34444
No 276
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=56.58 E-value=97 Score=29.07 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=8.9
Q ss_pred cCHHHHHHHHHhhCC
Q 011718 195 WTEKEFRKVIEDVGP 209 (479)
Q Consensus 195 ~~~~~l~~~f~~~g~ 209 (479)
.++..|...|...+.
T Consensus 99 sNE~kLn~AF~~s~~ 113 (441)
T KOG1902|consen 99 SNEKKLNLAFRSSRS 113 (441)
T ss_pred ccHHHHHHHHhhcCc
Confidence 345666667776444
No 277
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=56.54 E-value=8.9 Score=32.28 Aligned_cols=74 Identities=19% Similarity=0.259 Sum_probs=51.2
Q ss_pred CeEEECCCCCCC-CH----HHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCC-eeee
Q 011718 104 SEVFIGGLPKDA-SE----EDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGK-TIRC 177 (479)
Q Consensus 104 ~~l~V~nLp~~~-te----~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~-~l~v 177 (479)
.+|++.+|+..+ +. .....+|.+|-+.....+++ +.+..-|.|.+++.|..|...++...|.|+ .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 357777777553 22 22345666665544444433 345678999999999999999999999998 8877
Q ss_pred eccCCC
Q 011718 178 SMSETN 183 (479)
Q Consensus 178 ~~a~~~ 183 (479)
.++...
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 777654
No 278
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=54.38 E-value=1.2e+02 Score=28.50 Aligned_cols=10 Identities=10% Similarity=-0.031 Sum_probs=4.0
Q ss_pred HHHHHhhccc
Q 011718 118 EDLRDLCEPI 127 (479)
Q Consensus 118 ~~l~~~f~~~ 127 (479)
..|...|..-
T Consensus 102 ~kLn~AF~~s 111 (441)
T KOG1902|consen 102 KKLNLAFRSS 111 (441)
T ss_pred HHHHHHHhhc
Confidence 3344444433
No 279
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=53.76 E-value=15 Score=34.88 Aligned_cols=69 Identities=22% Similarity=0.242 Sum_probs=47.3
Q ss_pred CCCeEEECCCCCCCCHHHHHHhhcccCc-eeEEEEeecCCC--CCceeEEEEEecCHHHHHHHHHHhcCCCC
Q 011718 102 HGSEVFIGGLPKDASEEDLRDLCEPIGE-VFEVGLVKDKDS--GESKGFAFVAFRSKEVAKRAIDELCSKDF 170 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~~l~~~f~~~G~-i~~v~i~~~~~~--g~~~g~afV~F~~~e~a~~Al~~l~~~~~ 170 (479)
..+.|.|++||+.+|+.+|.+....|-. |....+.+...+ ....+.|||.|...++.......++|.++
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 3457999999999999999887777642 333333321110 12256799999999997777777666543
No 280
>PF12782 Innate_immun: Invertebrate innate immunity transcript family
Probab=53.17 E-value=1.5e+02 Score=25.58 Aligned_cols=6 Identities=50% Similarity=0.313 Sum_probs=2.3
Q ss_pred HHHHHH
Q 011718 333 ALKAIK 338 (479)
Q Consensus 333 a~~a~~ 338 (479)
|..||.
T Consensus 13 aalais 18 (311)
T PF12782_consen 13 AALAIS 18 (311)
T ss_pred HHHHHH
Confidence 333443
No 281
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=52.21 E-value=49 Score=23.82 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=41.8
Q ss_pred eEEECCCCCCCCHHHHHHhhcc-cC-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHH
Q 011718 105 EVFIGGLPKDASEEDLRDLCEP-IG-EVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDE 164 (479)
Q Consensus 105 ~l~V~nLp~~~te~~l~~~f~~-~G-~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~ 164 (479)
.-|+-.++..++..+|+..++. |+ .|..|+.+.-+ ....-|||++.....|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHh
Confidence 3566678889999999998876 55 57777765543 2334699999998888876654
No 282
>PHA03169 hypothetical protein; Provisional
Probab=51.85 E-value=32 Score=32.54 Aligned_cols=10 Identities=20% Similarity=0.189 Sum_probs=5.1
Q ss_pred HHHHHHHhhC
Q 011718 199 EFRKVIEDVG 208 (479)
Q Consensus 199 ~l~~~f~~~g 208 (479)
-...+|.++-
T Consensus 302 ~r~~Ffr~~l 311 (413)
T PHA03169 302 ARRRFFRQVL 311 (413)
T ss_pred HHHHHHHHhc
Confidence 3445566553
No 283
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=51.56 E-value=40 Score=23.53 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=42.4
Q ss_pred HHHHHHHhcCC-CEEEEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 295 KQLKELFQRHG-EVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 295 ~~l~~~f~~~G-~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
+.|.+.|..+| .|..|.-+..+.++ -..-||+.....+-.. -++=..|++++|.|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 46788889988 78888888777654 4577888766543333 24445788999888766543
No 284
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.51 E-value=29 Score=33.14 Aligned_cols=55 Identities=13% Similarity=0.177 Sum_probs=43.2
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEE-EEEccCCCCCCCceEEEEeCChHHHHHHHHh
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVT-KVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~-~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~ 339 (479)
...|-|.++|...-.++|..+|+.|+.-- +|..+.+ ..||-.|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-----thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-----THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-----ceeEEeecchHHHHHHhhc
Confidence 36789999999998899999999997422 3333333 3799999999999999973
No 285
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=48.73 E-value=13 Score=32.73 Aligned_cols=36 Identities=22% Similarity=0.381 Sum_probs=30.3
Q ss_pred CCCCCCCeEEECCCCCCCCHHHHHHhhcccCceeEE
Q 011718 98 ALPPHGSEVFIGGLPKDASEEDLRDLCEPIGEVFEV 133 (479)
Q Consensus 98 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~v 133 (479)
+......+||+-|||..+|++-|..+.+++|-+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 455677899999999999999999999999855433
No 286
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=48.34 E-value=32 Score=28.99 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=37.9
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCC--C-CceEEEEeCChHHHHHHHHh
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSG--K-RDFGFIHYAERSSALKAIKD 339 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~--~-~g~~fV~f~~~~~a~~a~~~ 339 (479)
+++|.. +.....++|.++-+ |.+..|.+.+...+ . +|-.||+|.+.+.|.+.+..
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 456655 32333344444444 78888888776665 3 89999999999999987764
No 287
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.14 E-value=4.3 Score=41.06 Aligned_cols=17 Identities=6% Similarity=0.012 Sum_probs=10.6
Q ss_pred HHHHhhcccCceeEEEE
Q 011718 119 DLRDLCEPIGEVFEVGL 135 (479)
Q Consensus 119 ~l~~~f~~~G~i~~v~i 135 (479)
..++-|++|--+.+.+-
T Consensus 466 ~ArerfqkYRGLksl~T 482 (754)
T KOG1980|consen 466 SARERFQKYRGLKSLRT 482 (754)
T ss_pred HHHHHHHHhcccccccc
Confidence 35677777765655543
No 288
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=45.69 E-value=10 Score=36.07 Aligned_cols=62 Identities=21% Similarity=0.250 Sum_probs=50.4
Q ss_pred CCCeEEECCCCCCCCHH--------HHHHhhcc--cCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHH
Q 011718 102 HGSEVFIGGLPKDASEE--------DLRDLCEP--IGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAID 163 (479)
Q Consensus 102 ~~~~l~V~nLp~~~te~--------~l~~~f~~--~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~ 163 (479)
..+.+|+.+.....+.+ ++...|.. .+++..|+..++.....++|..|++|+..+.+++++.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 44668888887665444 89999988 6788889988887667889999999999999998873
No 289
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=45.40 E-value=13 Score=40.04 Aligned_cols=11 Identities=18% Similarity=0.250 Sum_probs=7.2
Q ss_pred CeEEECCCCCC
Q 011718 104 SEVFIGGLPKD 114 (479)
Q Consensus 104 ~~l~V~nLp~~ 114 (479)
+.+||-.+|..
T Consensus 905 ~~~wvl~~Pi~ 915 (1096)
T TIGR00927 905 QAIYLFLLPIV 915 (1096)
T ss_pred eeEeEEecchh
Confidence 45777777754
No 290
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=45.13 E-value=81 Score=30.40 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=9.8
Q ss_pred CCHHHHHHhhcccCcee
Q 011718 115 ASEEDLRDLCEPIGEVF 131 (479)
Q Consensus 115 ~te~~l~~~f~~~G~i~ 131 (479)
.+.++|...+.+.+.+.
T Consensus 47 KDp~qi~~~m~kldem~ 63 (487)
T KOG4672|consen 47 KDPDQITSKMEKLDEME 63 (487)
T ss_pred CCHHHHHHHHHhhcccc
Confidence 45566666666665443
No 291
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.59 E-value=15 Score=34.99 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=10.1
Q ss_pred EECCCCCCCCHHHHHHhhcc
Q 011718 107 FIGGLPKDASEEDLRDLCEP 126 (479)
Q Consensus 107 ~V~nLp~~~te~~l~~~f~~ 126 (479)
|---||.--|..+|...|-.
T Consensus 354 fAq~lp~i~~p~d~y~~F~~ 373 (514)
T KOG3130|consen 354 FAQELPTIRTPADIYRAFVD 373 (514)
T ss_pred ccccCCccCCcchhhhhhee
Confidence 34455554455555554443
No 292
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.41 E-value=30 Score=36.41 Aligned_cols=9 Identities=22% Similarity=0.228 Sum_probs=4.4
Q ss_pred EEEEecCHH
Q 011718 148 AFVAFRSKE 156 (479)
Q Consensus 148 afV~F~~~e 156 (479)
.+|.+.+.+
T Consensus 772 ~~i~~~~~e 780 (968)
T KOG1060|consen 772 THIEEKSIE 780 (968)
T ss_pred ccCcchhHh
Confidence 445555444
No 293
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=42.97 E-value=15 Score=39.56 Aligned_cols=8 Identities=25% Similarity=0.509 Sum_probs=3.7
Q ss_pred eEEEEEec
Q 011718 146 GFAFVAFR 153 (479)
Q Consensus 146 g~afV~F~ 153 (479)
.+-.|.|-
T Consensus 932 k~y~ltFi 939 (1096)
T TIGR00927 932 KFFVITFL 939 (1096)
T ss_pred ceeeehHH
Confidence 34445554
No 294
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=42.44 E-value=14 Score=34.14 Aligned_cols=17 Identities=0% Similarity=0.030 Sum_probs=8.2
Q ss_pred ceEEecCCCCCCCHHHH
Q 011718 281 KALYVKNLPENTTTKQL 297 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l 297 (479)
.+|-|--.+..++-+.|
T Consensus 192 ~TV~IvE~~~~~D~e~i 208 (285)
T PF03896_consen 192 GTVTIVEPESGFDPETI 208 (285)
T ss_pred ceEEEeecCCCcChhhh
Confidence 44555444444554444
No 295
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.29 E-value=4.6 Score=38.76 Aligned_cols=77 Identities=10% Similarity=0.013 Sum_probs=60.5
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCC--CceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGK--RDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQ 358 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~--~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~ 358 (479)
.+.|+..||..+++.++.-+|..||.|..+.+.+-.++. +-++||+-.+ .+|..+|..+.-..+.+..++|.++...
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 456788899999999999999999999999887776655 5678888754 4566777666666788888888887543
No 296
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=41.90 E-value=97 Score=21.80 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=19.5
Q ss_pred eEEEEEecCHHHHHHHHHHhcCCC
Q 011718 146 GFAFVAFRSKEVAKRAIDELCSKD 169 (479)
Q Consensus 146 g~afV~F~~~e~a~~Al~~l~~~~ 169 (479)
.+.+|.|.+..+|-+|-+.|...-
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~g 25 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNG 25 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCC
Confidence 368999999999999988776543
No 297
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=40.66 E-value=1.1e+02 Score=20.40 Aligned_cols=54 Identities=13% Similarity=0.170 Sum_probs=41.3
Q ss_pred eEEecCCCCCCCHHHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCCh----HHHHHHHHh
Q 011718 282 ALYVKNLPENTTTKQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAER----SSALKAIKD 339 (479)
Q Consensus 282 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~----~~a~~a~~~ 339 (479)
+|.|.||.-.--...|...+...-.|..+.+.... +.+-|.|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~----~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET----KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT----TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC----CEEEEEEecCCCCHHHHHHHHHH
Confidence 46788888777788999999999889988886665 5788998744 555566654
No 298
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=40.36 E-value=30 Score=31.77 Aligned_cols=31 Identities=16% Similarity=0.339 Sum_probs=13.4
Q ss_pred eeeeeccCCCceeecc-CCCCCcCHHHHHHHH
Q 011718 174 TIRCSMSETNNRLFIG-NVPKSWTEKEFRKVI 204 (479)
Q Consensus 174 ~l~v~~a~~~~~l~v~-nl~~~~~~~~l~~~f 204 (479)
-|.|.+...+..+.|+ +|-..+++....++.
T Consensus 102 LLlVa~~dr~~rIevGyGLEg~ltD~~a~~iI 133 (271)
T COG1512 102 LLLVAMNDRRVRIEVGYGLEGVLTDAQAGRII 133 (271)
T ss_pred EEEEEcCCCeEEEEEecCcccccChHHHHHHH
Confidence 3444444433333333 344445555444443
No 299
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=40.15 E-value=37 Score=32.43 Aligned_cols=64 Identities=16% Similarity=0.175 Sum_probs=44.8
Q ss_pred ceEEecCCCCCCCHHHHHHHHhcCC-CEEEEEccCCCCCC----CceEEEEeCChHHHHHHHHhcCCce
Q 011718 281 KALYVKNLPENTTTKQLKELFQRHG-EVTKVVTPPGKSGK----RDFGFIHYAERSSALKAIKDTEKYE 344 (479)
Q Consensus 281 ~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~v~~~~~~~~~----~g~~fV~f~~~~~a~~a~~~~~~~~ 344 (479)
..|.|.+||...+.+.|.+....|- .|....+.....+. .+.|+|-|.+.++...-...++|+.
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~i 76 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYI 76 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceE
Confidence 5789999999999999888777654 23333333222111 4679999999999777777677653
No 300
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=39.22 E-value=1e+02 Score=19.94 Aligned_cols=43 Identities=9% Similarity=0.265 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCC-CEEEEEccCCCCCCCceEEEEeCChHHHHHHH
Q 011718 294 TKQLKELFQRHG-EVTKVVTPPGKSGKRDFGFIHYAERSSALKAI 337 (479)
Q Consensus 294 ~~~l~~~f~~~G-~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~ 337 (479)
-..|..+|.+.| .|..+.+.... +.+....+.+.+.+.|.+++
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETR-GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEECCHHHHHHHh
Confidence 356667788877 78777766554 33567788888888777765
No 301
>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only]
Probab=37.79 E-value=77 Score=28.49 Aligned_cols=20 Identities=15% Similarity=-0.004 Sum_probs=10.0
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 011718 447 PPPRPRRVERGPGGRGASSG 466 (479)
Q Consensus 447 p~~~~~~~~~~~gg~gg~~~ 466 (479)
.-.+.++-+.++.+|..+-.
T Consensus 282 SewqmaYePQgGs~ydysyA 301 (390)
T KOG2192|consen 282 SEWQMAYEPQGGSGYDYSYA 301 (390)
T ss_pred cccccccCCCCCCCCCcccc
Confidence 33455555555555555433
No 302
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=37.57 E-value=14 Score=36.71 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=12.1
Q ss_pred ceeeccCCCCCcCHHHHHH
Q 011718 184 NRLFIGNVPKSWTEKEFRK 202 (479)
Q Consensus 184 ~~l~v~nl~~~~~~~~l~~ 202 (479)
..|.|++|+-...+..|+.
T Consensus 283 ~~L~vGGL~lk~QE~~LRs 301 (691)
T KOG0338|consen 283 VGLAVGGLDLKAQEAVLRS 301 (691)
T ss_pred eeeeecCccHHHHHHHHhh
Confidence 4667777776666655554
No 303
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=37.38 E-value=1.7e+02 Score=23.41 Aligned_cols=69 Identities=9% Similarity=0.141 Sum_probs=47.2
Q ss_pred eEEecCCCCC---CCHHHHHHHHhcCC-CEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCceecCeEEEEEecC
Q 011718 282 ALYVKNLPEN---TTTKQLKELFQRHG-EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKYEIDGQVLEVALAR 356 (479)
Q Consensus 282 ~l~v~nl~~~---~~~~~l~~~f~~~G-~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~ 356 (479)
.|.|+..... .+-..+.+++..-| .++++.... +...|.|.+.++-.+|...|....-++..|.+.++.
T Consensus 37 avQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~------~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 37 TLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEN------DSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred eEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeC------CEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 3555544222 45678888888877 566766644 358999999999888888877654455566666554
No 304
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]
Probab=37.37 E-value=4.5e+02 Score=27.08 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCCEEEEEccCC-CCCC-CceEEEEeCChHHHHHHHH
Q 011718 295 KQLKELFQRHGEVTKVVTPPG-KSGK-RDFGFIHYAERSSALKAIK 338 (479)
Q Consensus 295 ~~l~~~f~~~G~v~~v~~~~~-~~~~-~g~~fV~f~~~~~a~~a~~ 338 (479)
+.|+.+-.+-|. +|.|.++ .++. +---||-.-+......|..
T Consensus 338 EtIK~in~qSGA--~~el~r~~p~~~~~ektf~IrG~~~QIdhAk~ 381 (600)
T KOG1676|consen 338 ETIKQINQQSGA--RCELSRQPPNGNPKEKTFVIRGDKRQIDHAKQ 381 (600)
T ss_pred cchhhhcccCCc--cccccCCCCCCCccceEEEEecCcccchHHHH
Confidence 445555544332 3445555 3333 3335666655544444443
No 305
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=37.27 E-value=4.6e+02 Score=26.67 Aligned_cols=10 Identities=20% Similarity=0.341 Sum_probs=7.1
Q ss_pred CceecCeEEE
Q 011718 342 KYEIDGQVLE 351 (479)
Q Consensus 342 ~~~~~g~~i~ 351 (479)
|....|+.|.
T Consensus 427 GLn~~Gqsir 436 (582)
T PF03276_consen 427 GLNARGQSIR 436 (582)
T ss_pred Cccccccccc
Confidence 5566688887
No 306
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=36.90 E-value=24 Score=34.98 Aligned_cols=9 Identities=22% Similarity=0.169 Sum_probs=5.4
Q ss_pred eEEEEeCCh
Q 011718 322 FGFIHYAER 330 (479)
Q Consensus 322 ~~fV~f~~~ 330 (479)
-|.+.+.+.
T Consensus 443 ~ap~~~s~~ 451 (694)
T KOG4264|consen 443 RAPSHQSDR 451 (694)
T ss_pred ccccccccc
Confidence 466776543
No 307
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=36.49 E-value=38 Score=32.19 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=26.6
Q ss_pred EEEEeCChHHHHHHHHhcCCceecCeEEEEEecCCCC
Q 011718 323 GFIHYAERSSALKAIKDTEKYEIDGQVLEVALARPQT 359 (479)
Q Consensus 323 ~fV~f~~~~~a~~a~~~~~~~~~~g~~i~v~~a~~~~ 359 (479)
|||+|++..+|..|++.+..+ ..+.+.|..|-.+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCCcc
Confidence 799999999999999965543 33556777776654
No 308
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=35.67 E-value=50 Score=34.48 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=12.5
Q ss_pred CCCC----CCHHHHHHhhcccC
Q 011718 111 LPKD----ASEEDLRDLCEPIG 128 (479)
Q Consensus 111 Lp~~----~te~~l~~~f~~~G 128 (479)
||+. .|-++|..+++.+-
T Consensus 388 lpfti~~Pk~yeef~~Ll~k~s 409 (823)
T KOG2147|consen 388 LPFTIECPKNYEEFLALLEKLS 409 (823)
T ss_pred CCeeecCCcCHHHHHHHHHccC
Confidence 6654 36778888887764
No 309
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=35.37 E-value=21 Score=35.30 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=13.8
Q ss_pred cCCCCCCCeEEECCCCCCCC
Q 011718 97 LALPPHGSEVFIGGLPKDAS 116 (479)
Q Consensus 97 ~~~~~~~~~l~V~nLp~~~t 116 (479)
....+.+.+++-+.|.+.+.
T Consensus 173 l~~Dp~GaR~~sGs~Dy~v~ 192 (641)
T KOG0772|consen 173 LAVDPSGARFVSGSLDYTVK 192 (641)
T ss_pred eeecCCCceeeeccccceEE
Confidence 34456777888888887753
No 310
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=33.88 E-value=32 Score=30.39 Aligned_cols=32 Identities=25% Similarity=0.489 Sum_probs=28.0
Q ss_pred cceEEecCCCCCCCHHHHHHHHhcCCCEEEEE
Q 011718 280 VKALYVKNLPENTTTKQLKELFQRHGEVTKVV 311 (479)
Q Consensus 280 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~ 311 (479)
..+||+-|||..+|++.|..+.+++|.+..+.
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 47899999999999999999999998666544
No 311
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=33.50 E-value=1.8e+02 Score=20.84 Aligned_cols=60 Identities=8% Similarity=0.122 Sum_probs=39.5
Q ss_pred EEecCCCCCCCHHHHHHHHh-------cCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcCCc
Q 011718 283 LYVKNLPENTTTKQLKELFQ-------RHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTEKY 343 (479)
Q Consensus 283 l~v~nl~~~~~~~~l~~~f~-------~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~~~ 343 (479)
|...+||..+|.++|..+.. .+..|..++........+-||+..=.|.+...++.+. .|.
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~-aG~ 69 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARR-AGL 69 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHH-cCC
Confidence 55678898899999877653 4446666655554443356777776787777777664 354
No 312
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=33.30 E-value=1.6e+02 Score=20.02 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=30.6
Q ss_pred CHHHHHHHHhcCC-CEEEEEccCCCCCCCceEEEEeCChHHHHHHHHh
Q 011718 293 TTKQLKELFQRHG-EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339 (479)
Q Consensus 293 ~~~~l~~~f~~~G-~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~ 339 (479)
.-.+|-.+|.+.| .|.++.+..... +++.-+.+.+.+.|.+++..
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~--~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE--FGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC--CCEEEEEECCHHHHHHHHHH
Confidence 4467888888887 788887655432 35556667777677777764
No 313
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.58 E-value=61 Score=31.06 Aligned_cols=7 Identities=43% Similarity=0.548 Sum_probs=3.5
Q ss_pred EEEEecC
Q 011718 148 AFVAFRS 154 (479)
Q Consensus 148 afV~F~~ 154 (479)
+|+.+.+
T Consensus 370 ~F~~~vn 376 (514)
T KOG3130|consen 370 AFVDVVN 376 (514)
T ss_pred hheeccc
Confidence 4555544
No 314
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=31.80 E-value=21 Score=35.51 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=8.7
Q ss_pred EEEEecCHHHHHHHH
Q 011718 148 AFVAFRSKEVAKRAI 162 (479)
Q Consensus 148 afV~F~~~e~a~~Al 162 (479)
.+|...+.+-|..+.
T Consensus 255 VLVL~PTRELaiQv~ 269 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVH 269 (691)
T ss_pred EEEEeccHHHHHHHH
Confidence 456666666655544
No 315
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=31.33 E-value=30 Score=32.02 Aligned_cols=6 Identities=17% Similarity=0.047 Sum_probs=3.5
Q ss_pred eEEECC
Q 011718 105 EVFIGG 110 (479)
Q Consensus 105 ~l~V~n 110 (479)
.+|..+
T Consensus 86 ~~F~~~ 91 (285)
T PF03896_consen 86 ILFPKP 91 (285)
T ss_pred EEeccc
Confidence 566655
No 316
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=31.05 E-value=1.3e+02 Score=28.88 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=26.2
Q ss_pred ccceEEecCCCCC-CCHHHHHHHHhcC----CCEEEEEc
Q 011718 279 QVKALYVKNLPEN-TTTKQLKELFQRH----GEVTKVVT 312 (479)
Q Consensus 279 ~~~~l~v~nl~~~-~~~~~l~~~f~~~----G~v~~v~~ 312 (479)
.+++|-|-||.|. +...+|..+|+.| |.|..|.|
T Consensus 145 ~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~i 183 (622)
T COG5638 145 PTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKI 183 (622)
T ss_pred cccceeEeecccccchHHHHHHHHHhhCCCCCccceeEe
Confidence 3578999999985 5668899998876 46776665
No 317
>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only]
Probab=30.95 E-value=3.6e+02 Score=24.47 Aligned_cols=15 Identities=13% Similarity=0.091 Sum_probs=6.8
Q ss_pred HHHHHhcCCceecCe
Q 011718 334 LKAIKDTEKYEIDGQ 348 (479)
Q Consensus 334 ~~a~~~~~~~~~~g~ 348 (479)
+..+..+....|.|.
T Consensus 185 ~~il~~i~e~pikgs 199 (390)
T KOG2192|consen 185 KIILDLISESPIKGS 199 (390)
T ss_pred HHHHHHhhcCCcCCc
Confidence 334444444455553
No 318
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=30.41 E-value=1.6e+02 Score=24.19 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=37.3
Q ss_pred EEecCCCCCCCHHHHHHHHhc-CC-CEEEEEccCCCCCCCceEEEEeCChHHHHHHHH
Q 011718 283 LYVKNLPENTTTKQLKELFQR-HG-EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIK 338 (479)
Q Consensus 283 l~v~nl~~~~~~~~l~~~f~~-~G-~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~ 338 (479)
-|+--+....+..+|+..++. |+ .|..|....-..+. .-|||++....+|.....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~-KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGL-KKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCc-eEEEEEECCCCcHHHHHH
Confidence 444455668899999999987 65 67777665554433 249999977666554433
No 319
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=28.40 E-value=50 Score=29.21 Aligned_cols=9 Identities=0% Similarity=-0.049 Sum_probs=3.4
Q ss_pred CHHHHHHhh
Q 011718 116 SEEDLRDLC 124 (479)
Q Consensus 116 te~~l~~~f 124 (479)
.+.++++.|
T Consensus 151 DW~Em~~Ai 159 (217)
T PF07423_consen 151 DWNEMLKAI 159 (217)
T ss_pred CHHHHHHHH
Confidence 333333333
No 320
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=27.95 E-value=86 Score=31.95 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=7.2
Q ss_pred eEEECCCCCCC
Q 011718 105 EVFIGGLPKDA 115 (479)
Q Consensus 105 ~l~V~nLp~~~ 115 (479)
.=.|+|||...
T Consensus 120 rntvgnipl~w 130 (733)
T KOG0650|consen 120 RNTVGNIPLKW 130 (733)
T ss_pred hcccCCccccc
Confidence 44578888654
No 321
>KOG4761 consensus Proteasome formation inhibitor PI31 [Posttranslational modification, protein turnover, chaperones]
Probab=27.08 E-value=4.7e+02 Score=23.54 Aligned_cols=8 Identities=0% Similarity=0.194 Sum_probs=3.4
Q ss_pred eCChHHHH
Q 011718 327 YAERSSAL 334 (479)
Q Consensus 327 f~~~~~a~ 334 (479)
|.+.+...
T Consensus 131 ~kn~dklv 138 (266)
T KOG4761|consen 131 FKNLDKLV 138 (266)
T ss_pred ccCHHHHH
Confidence 44444333
No 322
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=26.87 E-value=74 Score=22.43 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=22.2
Q ss_pred ceEEEEeCChHHHHHHHHhcCCceecCe
Q 011718 321 DFGFIHYAERSSALKAIKDTEKYEIDGQ 348 (479)
Q Consensus 321 g~~fV~f~~~~~a~~a~~~~~~~~~~g~ 348 (479)
.+.+|.|.|..+|.+|-+.|....+..+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 4689999999999999998876555443
No 323
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=26.58 E-value=68 Score=32.16 Aligned_cols=9 Identities=22% Similarity=0.220 Sum_probs=4.4
Q ss_pred eecCeEEEE
Q 011718 344 EIDGQVLEV 352 (479)
Q Consensus 344 ~~~g~~i~v 352 (479)
.|.|+.+.+
T Consensus 538 ~i~gK~~~~ 546 (555)
T KOG2393|consen 538 AIVGKLCVK 546 (555)
T ss_pred cccceEEEE
Confidence 355554443
No 324
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=25.97 E-value=2.8e+02 Score=20.60 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCC-CEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcC
Q 011718 294 TKQLKELFQRHG-EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTE 341 (479)
Q Consensus 294 ~~~l~~~f~~~G-~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~ 341 (479)
.+.++++++++| +++++.+...... -...+++.+.+.|.++...+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD--~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYD--FVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCC--EEEEEEcCCHHHHHHHHHHHH
Confidence 366788888876 8888888766643 578888999998887776554
No 325
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.74 E-value=1e+02 Score=31.29 Aligned_cols=64 Identities=23% Similarity=0.283 Sum_probs=49.1
Q ss_pred CCCeEEECCCCCCC---CHHHHHHhhcccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCCCCCCee
Q 011718 102 HGSEVFIGGLPKDA---SEEDLRDLCEPIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCSKDFKGKTI 175 (479)
Q Consensus 102 ~~~~l~V~nLp~~~---te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~~~~~g~~l 175 (479)
+..-=+|+||+.-. .-..|.++-++||+|..+++-.. -.|..++.+.|+.|+.. ++..+.+|..
T Consensus 31 P~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 31 PPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred CCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 44556889998543 34566777789999999888322 36888999999999976 8888988886
No 326
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=25.62 E-value=59 Score=29.33 Aligned_cols=34 Identities=21% Similarity=0.478 Sum_probs=26.6
Q ss_pred ceEEecCCCCC------------CCHHHHHHHHhcCCCEEEEEccC
Q 011718 281 KALYVKNLPEN------------TTTKQLKELFQRHGEVTKVVTPP 314 (479)
Q Consensus 281 ~~l~v~nl~~~------------~~~~~l~~~f~~~G~v~~v~~~~ 314 (479)
.+||+.+||.. -++..|+..|..||.|..|.|+.
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 56777777742 25678999999999999988763
No 327
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=25.49 E-value=48 Score=34.43 Aligned_cols=12 Identities=8% Similarity=0.055 Sum_probs=6.9
Q ss_pred ChHHHHHHHHhc
Q 011718 329 ERSSALKAIKDT 340 (479)
Q Consensus 329 ~~~~a~~a~~~~ 340 (479)
...+|..+|..|
T Consensus 515 ~I~eah~~L~el 526 (595)
T PF05470_consen 515 LIKEAHQCLSEL 526 (595)
T ss_pred CHHHHHHHHHHH
Confidence 455666666554
No 328
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=25.48 E-value=61 Score=31.70 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 011718 418 PAGMHMVPMVLPDGRIGYVLQQPGVQMPLPPPRPRRVERGPGGRGASSGGSDGSSGR 474 (479)
Q Consensus 418 ~~~~~~~p~~~p~~~~g~~~~~~~~~~~~p~~~~~~~~~~~gg~gg~~~~~~~~~~~ 474 (479)
+.+...+|.+..+......+-............-+.+++|++..+|+...+++|++.
T Consensus 30 ~a~~~~~~a~~~~~~~~~~~~a~aaaaaa~~~~~~~g~~g~~s~~g~~s~~~gg~~~ 86 (641)
T KOG3915|consen 30 PAPSIGPPASSGPTLFRPEPIASAAAAAATVTSTGGGGGGGGSGGGGGSSGNGGGGG 86 (641)
T ss_pred CCCCCCCccccCccccCcchhHHHHHhhhheecccCCCCCCCCCCCccccCCCCCCC
No 329
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=25.20 E-value=1.9e+02 Score=30.40 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=21.8
Q ss_pred EEECCCCCCC-CHHHHHHhhcccCceeEEEEeecCCCCC
Q 011718 106 VFIGGLPKDA-SEEDLRDLCEPIGEVFEVGLVKDKDSGE 143 (479)
Q Consensus 106 l~V~nLp~~~-te~~l~~~f~~~G~i~~v~i~~~~~~g~ 143 (479)
+..+++|..+ ..+-|..+...--.|.+|-++-....|+
T Consensus 103 ~~~~~~p~T~y~~~yl~~l~~~p~~irnV~l~GhLhhGK 141 (971)
T KOG0468|consen 103 IHERDVPETVYDLEYLAGLMDNPERIRNVGLVGHLHHGK 141 (971)
T ss_pred hhhcccchhhhhHHHHHHhccCcceEEEEEEeeccccCh
Confidence 4567788753 4444555554433566777766655554
No 330
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=24.84 E-value=66 Score=28.48 Aligned_cols=13 Identities=15% Similarity=-0.041 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhcC
Q 011718 155 KEVAKRAIDELCS 167 (479)
Q Consensus 155 ~e~a~~Al~~l~~ 167 (479)
-....+||...-+
T Consensus 152 W~Em~~Ais~atg 164 (217)
T PF07423_consen 152 WNEMLKAISYATG 164 (217)
T ss_pred HHHHHHHHHHhhC
Confidence 4456666665433
No 331
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=24.74 E-value=4.2e+02 Score=24.76 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=30.2
Q ss_pred EEecCHHHHHHHHHHhcCCCCCCCeeeeeccCCCceeeccCCCCCcCHHHHHHH
Q 011718 150 VAFRSKEVAKRAIDELCSKDFKGKTIRCSMSETNNRLFIGNVPKSWTEKEFRKV 203 (479)
Q Consensus 150 V~F~~~e~a~~Al~~l~~~~~~g~~l~v~~a~~~~~l~v~nl~~~~~~~~l~~~ 203 (479)
|.|.-...|.+||..|....+ ..|.......+-+|.+.+-...+...+|...
T Consensus 175 va~pi~~~a~kAl~~L~~~~~--n~vql~ID~~nE~I~l~~t~~~~e~sdL~s~ 226 (342)
T KOG1747|consen 175 VAFPIDRNAEKALQDLKSSKL--NYVQLSIDLENETIQLSQTDTCTEPSDLPSR 226 (342)
T ss_pred eeecccHHHHHHHHHHHhhcc--ceEEEEeccccceeeeeccCCCCChHHhhhh
Confidence 667778888999988877663 3333333334445555554444444444443
No 332
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=24.52 E-value=1.9e+02 Score=23.75 Aligned_cols=54 Identities=13% Similarity=0.147 Sum_probs=36.6
Q ss_pred EEECCCCCCCCHHHHHHhhcc-cC-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH
Q 011718 106 VFIGGLPKDASEEDLRDLCEP-IG-EVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAI 162 (479)
Q Consensus 106 l~V~nLp~~~te~~l~~~f~~-~G-~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al 162 (479)
-|+--+...++..+|++.++. |+ .|..|..+..+. ..--|||.+....+|....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~---g~KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD---GLKKAYIRLSPDVDALDVA 139 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC---CceEEEEEECCCCcHHHHH
Confidence 455556778899999988876 55 566666655433 2235999998877665444
No 333
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=24.39 E-value=4.6e+02 Score=22.56 Aligned_cols=7 Identities=14% Similarity=0.282 Sum_probs=2.7
Q ss_pred HHHHHHh
Q 011718 296 QLKELFQ 302 (479)
Q Consensus 296 ~l~~~f~ 302 (479)
.|.+++.
T Consensus 65 ~v~~~Lk 71 (182)
T PRK06958 65 IVGEYLK 71 (182)
T ss_pred HHHHHhC
Confidence 3333333
No 334
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=23.62 E-value=2.7e+02 Score=19.75 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCCEEEEEccCCCCCCCceEEEEeCChHHHHHHHHhcC
Q 011718 295 KQLKELFQRHGEVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKDTE 341 (479)
Q Consensus 295 ~~l~~~f~~~G~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~~~ 341 (479)
..|.+.+.++| +..+.+.-...| ++.|+-|.+.+.+.++++.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G--~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGG--PTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSS--SEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCC--CeEEEEECCHHHHHHHHHHHH
Confidence 56777788888 444444433222 688888889998888887764
No 335
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=23.61 E-value=2.7e+02 Score=19.55 Aligned_cols=50 Identities=16% Similarity=0.292 Sum_probs=33.2
Q ss_pred CHHHHHHHHhcCC-CEEEEEccCCCCCC-CceEEEEeC-ChHHHHHHHHhcCC
Q 011718 293 TTKQLKELFQRHG-EVTKVVTPPGKSGK-RDFGFIHYA-ERSSALKAIKDTEK 342 (479)
Q Consensus 293 ~~~~l~~~f~~~G-~v~~v~~~~~~~~~-~g~~fV~f~-~~~~a~~a~~~~~~ 342 (479)
.--++...|+.+| .+.+|.-.+.+... .=+-||+|. ......+|+..|..
T Consensus 13 ~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 3466778888887 77888776665544 335678887 44455667776653
No 336
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=23.49 E-value=55 Score=32.23 Aligned_cols=23 Identities=4% Similarity=-0.152 Sum_probs=11.2
Q ss_pred CceEEEEeCChHHHHHHHHhcCC
Q 011718 320 RDFGFIHYAERSSALKAIKDTEK 342 (479)
Q Consensus 320 ~g~~fV~f~~~~~a~~a~~~~~~ 342 (479)
+|+.=|..-|+++-..+...-||
T Consensus 580 ~GvvEVD~~TpEErhl~~mQ~~G 602 (615)
T KOG3540|consen 580 SGVVEVDMLTPEERHLAKMQVNG 602 (615)
T ss_pred eeeEEEeecCHHHHHHHHHHhcC
Confidence 44444444566655554444443
No 337
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=23.49 E-value=5.7e+02 Score=27.02 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=6.5
Q ss_pred CCCCCCCCCCCCCCC
Q 011718 440 PGVQMPLPPPRPRRV 454 (479)
Q Consensus 440 ~~~~~~~p~~~~~~~ 454 (479)
|..+.+.|++++.+.
T Consensus 262 ps~qspt~~q~s~y~ 276 (1034)
T KOG0608|consen 262 PSRQSPTPPQQSAYD 276 (1034)
T ss_pred cccCCCCCCCccccc
Confidence 333444444444433
No 338
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=23.29 E-value=56 Score=33.94 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=5.8
Q ss_pred ecCHHHHHHHHHH
Q 011718 152 FRSKEVAKRAIDE 164 (479)
Q Consensus 152 F~~~e~a~~Al~~ 164 (479)
|...+.-.+|+..
T Consensus 276 ~M~~~~W~~~~~~ 288 (595)
T PF05470_consen 276 YMPIEQWKKCLNN 288 (595)
T ss_pred CcCHHHHHHHHHH
Confidence 3444444444443
No 339
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=23.11 E-value=1.7e+02 Score=21.46 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=21.3
Q ss_pred ceeEEEEeecCCCCCceeEEEEEecC
Q 011718 129 EVFEVGLVKDKDSGESKGFAFVAFRS 154 (479)
Q Consensus 129 ~i~~v~i~~~~~~g~~~g~afV~F~~ 154 (479)
.|++|+|.+-...++.+++|=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47788888876668999999999976
No 340
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=22.58 E-value=3.7e+02 Score=27.42 Aligned_cols=50 Identities=24% Similarity=0.186 Sum_probs=36.9
Q ss_pred HHHHHHhhc----ccCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcC
Q 011718 117 EEDLRDLCE----PIGEVFEVGLVKDKDSGESKGFAFVAFRSKEVAKRAIDELCS 167 (479)
Q Consensus 117 e~~l~~~f~----~~G~i~~v~i~~~~~~g~~~g~afV~F~~~e~a~~Al~~l~~ 167 (479)
--+|..+|. .+|-|+++.+...+. ...+...++.|.+.++|..|+..+..
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~~ 256 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGDIIA 256 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHHHHh
Confidence 346777764 578888888776654 34456788999999999999987643
No 341
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=22.25 E-value=36 Score=32.23 Aligned_cols=10 Identities=10% Similarity=0.521 Sum_probs=4.4
Q ss_pred ceeeccCCCC
Q 011718 184 NRLFIGNVPK 193 (479)
Q Consensus 184 ~~l~v~nl~~ 193 (479)
..||+=++|.
T Consensus 170 GsvWmw~ip~ 179 (399)
T KOG0296|consen 170 GSVWMWQIPS 179 (399)
T ss_pred CcEEEEECCC
Confidence 3444444443
No 342
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=22.10 E-value=40 Score=32.38 Aligned_cols=58 Identities=12% Similarity=0.183 Sum_probs=44.2
Q ss_pred ceEEecCCCCCCC--------HHHHHHHHhc--CCCEEEEEccCCCC-CC-CceEEEEeCChHHHHHHHH
Q 011718 281 KALYVKNLPENTT--------TKQLKELFQR--HGEVTKVVTPPGKS-GK-RDFGFIHYAERSSALKAIK 338 (479)
Q Consensus 281 ~~l~v~nl~~~~~--------~~~l~~~f~~--~G~v~~v~~~~~~~-~~-~g~~fV~f~~~~~a~~a~~ 338 (479)
+.+|+.+.....+ .+++...|.. ++.+..|.+.++.. .. +|..|++|.+.+.|++.+.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4566666655443 3589999998 67888888888773 33 8899999999999999884
No 343
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=21.25 E-value=62 Score=19.33 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=10.3
Q ss_pred CCCCHHHHHHhhcccC
Q 011718 113 KDASEEDLRDLCEPIG 128 (479)
Q Consensus 113 ~~~te~~l~~~f~~~G 128 (479)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3578999999998764
No 344
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=20.77 E-value=4.6e+02 Score=25.58 Aligned_cols=9 Identities=0% Similarity=-0.296 Sum_probs=4.0
Q ss_pred hHHHHHHHH
Q 011718 238 ACADYSRQK 246 (479)
Q Consensus 238 ~~a~~a~~~ 246 (479)
++..+|+..
T Consensus 167 EdiaKAi~l 175 (462)
T KOG2199|consen 167 EDIAKAIEL 175 (462)
T ss_pred HHHHHHHHh
Confidence 344445443
No 345
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=20.45 E-value=35 Score=30.29 Aligned_cols=14 Identities=14% Similarity=0.109 Sum_probs=6.0
Q ss_pred cCCceecCeEEEEE
Q 011718 340 TEKYEIDGQVLEVA 353 (479)
Q Consensus 340 ~~~~~~~g~~i~v~ 353 (479)
|.-..+|...+.|.
T Consensus 215 l~ikV~N~~~~~~~ 228 (232)
T PRK12766 215 QGIRVLNPTYVEVE 228 (232)
T ss_pred hCCcccCCCceEEe
Confidence 33334444444443
No 346
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.28 E-value=2.7e+02 Score=18.34 Aligned_cols=45 Identities=9% Similarity=0.277 Sum_probs=27.0
Q ss_pred HHHHHHHhcCC-CEEEEEccCCCCCCCceEEEEeCChHHHHHHHHh
Q 011718 295 KQLKELFQRHG-EVTKVVTPPGKSGKRDFGFIHYAERSSALKAIKD 339 (479)
Q Consensus 295 ~~l~~~f~~~G-~v~~v~~~~~~~~~~g~~fV~f~~~~~a~~a~~~ 339 (479)
.+|-.+|.++| .|..+..............++.++.+.+.++++.
T Consensus 14 ~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~~ 59 (65)
T cd04882 14 HEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQE 59 (65)
T ss_pred HHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHHH
Confidence 56777888886 6766655443321123455566677777777664
No 347
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=20.25 E-value=3.1e+02 Score=19.04 Aligned_cols=49 Identities=16% Similarity=0.356 Sum_probs=31.8
Q ss_pred CHHHHHHHHhcCC-CEEEEEccCCCCCC-CceEEEEeCC---hHHHHHHHHhcC
Q 011718 293 TTKQLKELFQRHG-EVTKVVTPPGKSGK-RDFGFIHYAE---RSSALKAIKDTE 341 (479)
Q Consensus 293 ~~~~l~~~f~~~G-~v~~v~~~~~~~~~-~g~~fV~f~~---~~~a~~a~~~~~ 341 (479)
.-..+.+.|+.+| .|..|.-.+.+... .-..||++.. ......++..|.
T Consensus 12 ~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~ 65 (75)
T cd04880 12 ALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELK 65 (75)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHH
Confidence 3567888899887 77777555444323 3467888874 455566666654
No 348
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=20.22 E-value=7.5e+02 Score=23.48 Aligned_cols=7 Identities=14% Similarity=0.055 Sum_probs=2.8
Q ss_pred ceEEEEe
Q 011718 321 DFGFIHY 327 (479)
Q Consensus 321 g~~fV~f 327 (479)
|-|=|+|
T Consensus 114 GSCgleY 120 (318)
T PF06682_consen 114 GSCGLEY 120 (318)
T ss_pred CccceEE
Confidence 3344444
Done!